BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003018
         (856 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225425392|ref|XP_002276961.1| PREDICTED: histidine kinase 3 [Vitis vinifera]
 gi|297738469|emb|CBI27670.3| unnamed protein product [Vitis vinifera]
          Length = 1039

 Score = 1376 bits (3561), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/854 (79%), Positives = 747/854 (87%), Gaps = 8/854 (0%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFAQDTVS 61
            +RVL SERE+FEKQQGWTIKRMDT E  PVH+D       EPSP++EEYAPVIFAQDTVS
Sbjct: 186  VRVLHSEREQFEKQQGWTIKRMDTPEQTPVHEDNHASENLEPSPVQEEYAPVIFAQDTVS 245

Query: 62   HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
            HVISLDMLSGKEDRENVLRARASGK VLTAPFRL KTN LGVILTFAVYK +L SNATPN
Sbjct: 246  HVISLDMLSGKEDRENVLRARASGKAVLTAPFRLFKTNSLGVILTFAVYKSDLLSNATPN 305

Query: 122  ERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLW 181
            ERI+AT GYLGG+F IESLVEKLL QLASKQTI VNVYD T+  HPISMYGSNVSDDGL 
Sbjct: 306  ERIQATHGYLGGVFHIESLVEKLLQQLASKQTILVNVYDTTDTDHPISMYGSNVSDDGLQ 365

Query: 182  LVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
             VS LNFGDPFRKHEMRCRFKQKAPWP LAI+TS GILVIA LVGHIF ATVNRIAKVEE
Sbjct: 366  HVSALNFGDPFRKHEMRCRFKQKAPWPWLAITTSTGILVIALLVGHIFHATVNRIAKVEE 425

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            DY  MM LKK+AEAADVAKSQFLATVSHEIRTPMNGVLGML ML+DT+LDVTQQDYVRTA
Sbjct: 426  DYRDMMMLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLIDTDLDVTQQDYVRTA 485

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
            QASGKALVSLINEVLDQAK+ESGKLELE + F+L+AILDDVLSLFSGKSQ+KGVELAVYI
Sbjct: 486  QASGKALVSLINEVLDQAKIESGKLELEELQFDLQAILDDVLSLFSGKSQEKGVELAVYI 545

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
            SDRVP+ LIGDPGRFRQIITNLMGNSIKFTEKGHIFVT++LVEE++DSIEVETE SSSKN
Sbjct: 546  SDRVPKMLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTIHLVEELMDSIEVETE-SSSKN 604

Query: 422  TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 481
            TLSG PVADR  SW+GF+TFNQ+G TSPF SSS+DLI+LIVSVEDTG GIP EAQSR+FT
Sbjct: 605  TLSGLPVADRRCSWEGFRTFNQEGLTSPFSSSSSDLIHLIVSVEDTGVGIPEEAQSRVFT 664

Query: 482  PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 541
            PFMQVGPSISR HGGTGIGLSISK LVG M GEIGFVS PN+GSTFTFTAVF  G S SN
Sbjct: 665  PFMQVGPSISRIHGGTGIGLSISKCLVGLMNGEIGFVSRPNVGSTFTFTAVFSGGCSKSN 724

Query: 542  EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
            E+  Q  NNQ N+VSSEFQGM ALVVDP P+RAKVSRYHIQRLGI+VEV SD  Q  S I
Sbjct: 725  EYKCQPTNNQSNAVSSEFQGMAALVVDPNPVRAKVSRYHIQRLGIRVEVTSDLNQVFSSI 784

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
            +SG+  INM+LVEQ+VW+KD+++S LF N L+KL      KLFLLANSISS+R + +  G
Sbjct: 785  SSGNTAINMVLVEQDVWDKDSNLSALFGNKLKKLDLEVPPKLFLLANSISSTRNSAAISG 844

Query: 662  VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 721
            V  P+VIMKPLR+SMLAASLQRA+GVGNKG  +N E PS+SLR+LL GRKIL+VDDNNVN
Sbjct: 845  VYNPTVIMKPLRASMLAASLQRALGVGNKGVCQNGEHPSLSLRNLLRGRKILVVDDNNVN 904

Query: 722  LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
            L+VAA  LK+YGA VVC + GK A  LL PPH FDACFMDIQMPEMDGFEAT IIREME 
Sbjct: 905  LRVAAGALKKYGADVVCADSGKSAIPLLKPPHDFDACFMDIQMPEMDGFEATGIIREMER 964

Query: 782  NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
            N N+RI+ GEVS+EAY N+SN+H+PILAMTADVIQAT+EECLR GMDGYVSKPFEAEQLY
Sbjct: 965  NVNSRIQHGEVSVEAYANISNWHLPILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLY 1024

Query: 842  REVSRFFPPIPDRS 855
            REVSRFF P P+++
Sbjct: 1025 REVSRFFQPPPEQN 1038


>gi|190148357|gb|ACE63261.1| histidine kinase 3 [Betula pendula]
          Length = 1053

 Score = 1359 bits (3518), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 672/847 (79%), Positives = 735/847 (86%), Gaps = 8/847 (0%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFAQDTVS 61
            +RVL SERE+FEKQQGWTIKRMDT E NPVH+D       EPSPI+EEYAPVIFAQDT+S
Sbjct: 186  VRVLHSEREQFEKQQGWTIKRMDTLEQNPVHEDDYAPEALEPSPIQEEYAPVIFAQDTIS 245

Query: 62   HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
            HV+SLDMLSGKEDRENVL AR SGKGVLTAPF+LLKTNRLGVILTFAVYK +LPSNATPN
Sbjct: 246  HVVSLDMLSGKEDRENVLLARESGKGVLTAPFKLLKTNRLGVILTFAVYKTDLPSNATPN 305

Query: 122  ERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLW 181
            ERI+ATDGYLGG+FDIESLVEKLL QLASKQTI VNVYD TN SHPISMYGSNVSDDGL 
Sbjct: 306  ERIQATDGYLGGVFDIESLVEKLLQQLASKQTILVNVYDTTNHSHPISMYGSNVSDDGLQ 365

Query: 182  LVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
              S LNFGDPFRKHEM CRFKQK PWP LAI+TSIGILVIA LVG+IF ATVNRIAKVE+
Sbjct: 366  HGSALNFGDPFRKHEMHCRFKQKPPWPWLAITTSIGILVIALLVGYIFHATVNRIAKVED 425

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            D   M ELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT+LDVTQQDYVRTA
Sbjct: 426  DCQKMTELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTDLDVTQQDYVRTA 485

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
            Q SGKALVSLINEVLDQAK+ESG+LELEAV F+LRAILDDVLSLFSGKS   GVELAVYI
Sbjct: 486  QDSGKALVSLINEVLDQAKIESGRLELEAVQFDLRAILDDVLSLFSGKSPGNGVELAVYI 545

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
            SD+VPE LIGD GRFRQIITNLMGNSIKFTEKGHIFVTV+LVEEV+ SIEVETE SSS N
Sbjct: 546  SDQVPEMLIGDAGRFRQIITNLMGNSIKFTEKGHIFVTVHLVEEVIGSIEVETE-SSSNN 604

Query: 422  TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 481
            TLSG+PVADR  SW GF+TF+Q+GST P  SSS+DLINLIVSVEDTG GIP EAQSR+FT
Sbjct: 605  TLSGFPVADRKSSWDGFRTFSQEGSTCPLSSSSSDLINLIVSVEDTGVGIPREAQSRVFT 664

Query: 482  PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 541
            PFMQVGPSISRTHGGTGIGLSISK LVG MKGEIGFVSIPN GSTFTFTAVF N SS  N
Sbjct: 665  PFMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSIPNTGSTFTFTAVFTNASSHPN 724

Query: 542  EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
            E+ S Q+NNQ  S SSEFQGM ALVVDPRP+RAKVSRYHIQRLGI+VE+V D  Q  + I
Sbjct: 725  EYKSLQINNQSKSTSSEFQGMTALVVDPRPVRAKVSRYHIQRLGIRVELVPDLNQGFANI 784

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
            +SG+  I+M+LVEQEVW++D+ ++ LF+N  +K       KLFLLAN I SS+   +T  
Sbjct: 785  SSGNTAIDMVLVEQEVWDRDSGIAVLFINKFKKSYSRIPPKLFLLANPIGSSKTRAATSD 844

Query: 662  VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 721
               P VIMKPLR+SML+ASLQRAMGVGNKGN RN ELP  SLR+LLLGRKILIVDDNNVN
Sbjct: 845  DYTPPVIMKPLRASMLSASLQRAMGVGNKGNPRNGELPGSSLRNLLLGRKILIVDDNNVN 904

Query: 722  LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
            L+VAA  LK+YGA VVC E GKKA  LL PPH FDACFMDIQMPE+DGFEAT+ IR+MEH
Sbjct: 905  LRVAAGALKKYGADVVCAESGKKAISLLKPPHHFDACFMDIQMPEIDGFEATRRIRDMEH 964

Query: 782  NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
            N NN I+RGEVS+E  + +SN+HVPILAMTADVIQAT+EE ++ GMDGYVSKPFEA+QLY
Sbjct: 965  NINNSIQRGEVSVEGPQTISNWHVPILAMTADVIQATHEESIKCGMDGYVSKPFEAQQLY 1024

Query: 842  REVSRFF 848
            REVSRFF
Sbjct: 1025 REVSRFF 1031


>gi|255547688|ref|XP_002514901.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
 gi|223545952|gb|EEF47455.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
          Length = 1005

 Score = 1350 bits (3494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/849 (77%), Positives = 735/849 (86%), Gaps = 14/849 (1%)

Query: 9   IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFAQDTVS 61
           +RVL SERE+FE+QQGWTIK+MDT E NPVHKD       EPSPI+EEYAPVIFAQDT+S
Sbjct: 158 VRVLHSEREQFERQQGWTIKKMDTLEQNPVHKDDYIPELLEPSPIQEEYAPVIFAQDTIS 217

Query: 62  HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
           HV+S+DMLSGKEDRENVLRAR SG GVLTAPFRLLKTNRLGVILTFAVYKR+LPSNATPN
Sbjct: 218 HVVSIDMLSGKEDRENVLRARESGTGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPN 277

Query: 122 ERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLW 181
           ERI+ATDGYLGG+FDIESLVEKLL QLASKQTI V+VYD TN SHPISMYGSNVSD+GL 
Sbjct: 278 ERIQATDGYLGGVFDIESLVEKLLQQLASKQTILVDVYDTTNESHPISMYGSNVSDNGLQ 337

Query: 182 LVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
            VS LNFGDP RKHEM CRFKQKAPWP LAI+TSIG+LVI  L+GHIF ATVNRIAKVE+
Sbjct: 338 HVSALNFGDPHRKHEMHCRFKQKAPWPWLAITTSIGVLVIVLLIGHIFHATVNRIAKVED 397

Query: 242 DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
           DYH MMELKK+AEAAD+AKSQFLATVSHEIRTPMNGVLGML MLMDT LDVTQQDYVRTA
Sbjct: 398 DYHEMMELKKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLHMLMDTNLDVTQQDYVRTA 457

Query: 302 QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
           QASGKALVSLINEVLDQAK+ESGKLELE V FNLRAILDDVL LFS K+Q KGVELAVYI
Sbjct: 458 QASGKALVSLINEVLDQAKIESGKLELENVQFNLRAILDDVLPLFSEKAQVKGVELAVYI 517

Query: 362 SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
           SD VPE LIGDPGRFRQII NLMGNSIKFT +GH+FVTV+LVEEV+DSI+VET  SSS+N
Sbjct: 518 SDSVPELLIGDPGRFRQIIINLMGNSIKFTHQGHVFVTVHLVEEVIDSIDVETG-SSSRN 576

Query: 422 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 481
           T+SG+PVADR  SW GF+TF+Q+GS      SS D INLIVSVEDTG+GIPLEAQ RIF 
Sbjct: 577 TVSGFPVADRRRSWAGFRTFSQEGSNRALLPSS-DHINLIVSVEDTGEGIPLEAQPRIFI 635

Query: 482 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 541
           PFMQVGPS SR +GGTGIGLSISK LVG M GEIGFVSIP IG+TFTFTAVF NG S +N
Sbjct: 636 PFMQVGPSTSRKYGGTGIGLSISKCLVGLMNGEIGFVSIPRIGTTFTFTAVFANGCSNTN 695

Query: 542 EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
           E NSQ++++Q N+++SEF+GM AL+VD RP+RAKVSRYH+QRLG+ VEVVSD  Q LS I
Sbjct: 696 ECNSQKISSQSNTITSEFRGMTALIVDSRPVRAKVSRYHVQRLGMHVEVVSDLNQALSSI 755

Query: 602 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
            SG+ +IN++L+EQEVW+KD+S+S LFVNN RK+  G   KLFLLANSI+SSRAN     
Sbjct: 756 NSGNILINVVLIEQEVWDKDSSISALFVNNTRKIDHGVSPKLFLLANSINSSRANAVASA 815

Query: 662 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 721
           V  PSVIMKPLR+SMLAASLQRAMGVGNKGN  N EL +     LLLGRKILIVDDN+VN
Sbjct: 816 VYTPSVIMKPLRASMLAASLQRAMGVGNKGNAHNGELSN-----LLLGRKILIVDDNSVN 870

Query: 722 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
           LKVAA  LK+YGA VVC+E G+KA +LL PPHQFDACFMDIQMPEMDGFEAT+ IR+ EH
Sbjct: 871 LKVAAGALKKYGADVVCIESGEKAIKLLTPPHQFDACFMDIQMPEMDGFEATRRIRDREH 930

Query: 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
           NF N I+ G+ ++  YEN+ N+HVPILAMTADVIQAT+EEC + GMDGYVSKPFEAEQLY
Sbjct: 931 NFKNSIQSGDKTVGGYENLPNWHVPILAMTADVIQATHEECSKCGMDGYVSKPFEAEQLY 990

Query: 842 REVSRFFPP 850
           REVS FF P
Sbjct: 991 REVSSFFQP 999


>gi|190148361|gb|ACE63263.1| histidine kinase 3B [Populus trichocarpa]
          Length = 1019

 Score = 1311 bits (3393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/851 (76%), Positives = 729/851 (85%), Gaps = 32/851 (3%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFAQDTVS 61
            +RV+ SERE+FE QQGWTIKRMDTFE +PV KD       EPSPI+EEYAPVIFAQDTV+
Sbjct: 186  VRVMHSEREQFENQQGWTIKRMDTFEQSPVQKDDNVAKALEPSPIQEEYAPVIFAQDTVA 245

Query: 62   HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
            HV+SLDMLSG EDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYK +LPSNA PN
Sbjct: 246  HVVSLDMLSGTEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKTDLPSNAMPN 305

Query: 122  ERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLW 181
            ERI+ATDGYLGGIFDIESLVEKLL QLASKQTI VNVYDITN SHPISMYGSNVSDDGL 
Sbjct: 306  ERIQATDGYLGGIFDIESLVEKLLQQLASKQTILVNVYDITNQSHPISMYGSNVSDDGLE 365

Query: 182  LVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
             VS LNFGDPFRKHEMRCRFKQK PWP LAI+TSIGILVIA L+G+IF AT+NRIAKVE+
Sbjct: 366  HVSALNFGDPFRKHEMRCRFKQKPPWPWLAITTSIGILVIALLIGYIFHATMNRIAKVED 425

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            DY+ MMELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQQDYVRTA
Sbjct: 426  DYNEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELDATQQDYVRTA 485

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
            Q SGKALVSLINEVLDQAK+ESGK+ELEA+ F+LRAI+D+VL+LFSGK+ +KGVELAVY+
Sbjct: 486  QDSGKALVSLINEVLDQAKIESGKIELEAMQFDLRAIMDEVLALFSGKAHEKGVELAVYV 545

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
            SD VPE LIGDPGRFRQIITNLMGNSIKFT+KGHIF+TV+LVEEV+DSI+VETE SSS+N
Sbjct: 546  SDGVPEILIGDPGRFRQIITNLMGNSIKFTKKGHIFLTVHLVEEVMDSIDVETE-SSSRN 604

Query: 422  TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 481
            TLSG PVADRC SW GFKTFN +GS+     SS+DLINLIVSVEDTG+GIPLEAQ R+FT
Sbjct: 605  TLSGLPVADRCRSWVGFKTFNPEGSSHTLSPSSSDLINLIVSVEDTGEGIPLEAQPRVFT 664

Query: 482  PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 541
            PFMQV PSISR +GGTGIGLSISK LVG M G+IGFVSIP+IGSTFTFTAVF NG S SN
Sbjct: 665  PFMQVDPSISRKYGGTGIGLSISKCLVGLMNGDIGFVSIPDIGSTFTFTAVFSNGCSNSN 724

Query: 542  EH--NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS 599
            +     Q++  Q N++SS+FQGM ALVVDP+P+RAKVSRY IQRLGI VE+V D  Q LS
Sbjct: 725  DSKLQKQRLKTQTNTMSSKFQGMTALVVDPKPVRAKVSRYQIQRLGIHVELVLDLNQGLS 784

Query: 600  QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTST 659
             I++ +K++NM+ +EQEVW+KD+S+S LFVN L+K+  G  +KLFLL NS+ SSR NT+T
Sbjct: 785  SISNENKVVNMVFIEQEVWDKDSSISALFVNKLQKIVSGVSTKLFLLGNSL-SSRTNTAT 843

Query: 660  DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 719
             GV  PSVI KPL++SMLAASLQRAMG GNKGN  N E PS+SLR LL+GRK+LIVDDN 
Sbjct: 844  SGVYTPSVITKPLKASMLAASLQRAMG-GNKGNPCNGEHPSLSLRKLLVGRKMLIVDDNK 902

Query: 720  VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
            VNL VAAA LK+YGA VVC + G+KA +LL PPH+FDACFMDIQMPEMDGFEAT+ IR+M
Sbjct: 903  VNLMVAAAALKKYGADVVCADSGQKAIKLLKPPHKFDACFMDIQMPEMDGFEATRRIRDM 962

Query: 780  EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
            E                    SN+H+PILAMTADVIQATYEEC R GMDGYVSKPFEAEQ
Sbjct: 963  E--------------------SNWHIPILAMTADVIQATYEECQRCGMDGYVSKPFEAEQ 1002

Query: 840  LYREVSRFFPP 850
            LY EVSRF  P
Sbjct: 1003 LYHEVSRFLQP 1013


>gi|224075549|ref|XP_002304678.1| histidine kinase cytokinin receptor [Populus trichocarpa]
 gi|222842110|gb|EEE79657.1| histidine kinase cytokinin receptor [Populus trichocarpa]
          Length = 1029

 Score = 1303 bits (3373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/861 (75%), Positives = 729/861 (84%), Gaps = 42/861 (4%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFAQDTVS 61
            +RV+ SERE+FE QQGWTIKRMDTFE +PV KD       EPSPI+EEYAPVIFAQDTV+
Sbjct: 186  VRVMHSEREQFENQQGWTIKRMDTFEQSPVQKDDNVAKALEPSPIQEEYAPVIFAQDTVA 245

Query: 62   HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
            HV+SLDMLSG EDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYK +LPSNA PN
Sbjct: 246  HVVSLDMLSGTEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKTDLPSNAMPN 305

Query: 122  ERIEATDG----------YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMY 171
            ERI+ATDG          YLGGIFDIESLVEKLL QLASKQTI VNVYDITN SHPISMY
Sbjct: 306  ERIQATDGSSDLLMTPIRYLGGIFDIESLVEKLLQQLASKQTILVNVYDITNQSHPISMY 365

Query: 172  GSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQA 231
            GSNVSDDGL  VS LNFGDPFRKHEMRCRFKQK PWP LAI+TSIGILVIA L+G+IF A
Sbjct: 366  GSNVSDDGLEHVSALNFGDPFRKHEMRCRFKQKPPWPWLAITTSIGILVIALLIGYIFHA 425

Query: 232  TVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 291
            T+NRIAKVE+DY+ MMELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD
Sbjct: 426  TMNRIAKVEDDYNEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELD 485

Query: 292  VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 351
             TQQDYVRTAQ SGKALVSLINEVLDQAK+ESGK+ELEA+ F+LRAI+D+VL+LFSGK+ 
Sbjct: 486  ATQQDYVRTAQDSGKALVSLINEVLDQAKIESGKIELEAMQFDLRAIMDEVLALFSGKAH 545

Query: 352  DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 411
            +KGVELAVY+SD VPE LIGDPGRFRQIITNLMGNSIKFT+KGHIF+TV+LVEEV+DSI+
Sbjct: 546  EKGVELAVYVSDGVPEILIGDPGRFRQIITNLMGNSIKFTKKGHIFLTVHLVEEVMDSID 605

Query: 412  VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 471
            VETE SSS+NTLSG PVADRC SW GFKTFN +GS+     SS+DLINLIVSVEDTG+GI
Sbjct: 606  VETE-SSSRNTLSGLPVADRCRSWVGFKTFNPEGSSHTLSPSSSDLINLIVSVEDTGEGI 664

Query: 472  PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 531
            PLEAQ R+FTPFMQV PSISR +GGTGIGLSISK LVG M G+IGFVSIP+IGSTFTFTA
Sbjct: 665  PLEAQPRVFTPFMQVDPSISRKYGGTGIGLSISKCLVGLMNGDIGFVSIPDIGSTFTFTA 724

Query: 532  VFGNGSSTSNEH--NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 589
            VF NG S SN+     Q++  Q N++SS+FQGM ALVVDP+P+RAKVSRY IQRLGI VE
Sbjct: 725  VFSNGCSNSNDSKLQKQRLKTQTNTMSSKFQGMTALVVDPKPVRAKVSRYQIQRLGIHVE 784

Query: 590  VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 649
            +V D  Q LS I++ +K++NM+ +EQEVW+KD+S+S LFVN L+K+  G  +KLFLL NS
Sbjct: 785  LVLDLNQGLSSISNENKVVNMVFIEQEVWDKDSSISALFVNKLQKIVSGVSTKLFLLGNS 844

Query: 650  ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG 709
            + SSR NT+T GV  PSVI KPL++SMLAASLQRAMG GNKGN  N E PS+SLR LL+G
Sbjct: 845  L-SSRTNTATSGVYTPSVITKPLKASMLAASLQRAMG-GNKGNPCNGEHPSLSLRKLLVG 902

Query: 710  RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
            RK+LIVDDN VNL VAAA LK+YGA VVC + G+KA +LL PPH+FDACFMDIQMPEMDG
Sbjct: 903  RKMLIVDDNKVNLMVAAAALKKYGADVVCADSGQKAIKLLKPPHKFDACFMDIQMPEMDG 962

Query: 770  FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
            FEAT+ IR+ME                    SN+H+PILAMTADVIQATYEEC R GMDG
Sbjct: 963  FEATRRIRDME--------------------SNWHIPILAMTADVIQATYEECQRCGMDG 1002

Query: 830  YVSKPFEAEQLYREVSRFFPP 850
            YVSKPFEAEQLY EVSRF  P
Sbjct: 1003 YVSKPFEAEQLYHEVSRFLQP 1023


>gi|356512385|ref|XP_003524900.1| PREDICTED: histidine kinase 3-like [Glycine max]
          Length = 1030

 Score = 1298 bits (3360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/847 (75%), Positives = 723/847 (85%), Gaps = 15/847 (1%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFAQDTVS 61
            +RVL SERE+FEKQQGWTIKRMDT E NPVHKD       EPSP++EEYAPVIFAQDT++
Sbjct: 189  VRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPVQEEYAPVIFAQDTIA 248

Query: 62   HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
            HVIS+++LSGKEDRENVLRAR SGKGVLTAPFRLLKTNRLGVILTFAVYKR+LPSNATPN
Sbjct: 249  HVISVNVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPN 308

Query: 122  ERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLW 181
            ERI+ATDGYLGG+FD+ESLVEKLL QLASKQ++ VNVYD TN +HPI+MYGSN S D  +
Sbjct: 309  ERIQATDGYLGGVFDVESLVEKLLQQLASKQSVIVNVYDTTNHTHPIAMYGSNESGDVFF 368

Query: 182  LVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
             VSTLNFGDPFRKHEM CRFKQK PWP +AI+TSIGILVIA LVGHIF ATVNRIA+VE+
Sbjct: 369  HVSTLNFGDPFRKHEMHCRFKQKPPWPWVAITTSIGILVIALLVGHIFHATVNRIAEVED 428

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            DY   MELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LDVTQQ+YVRTA
Sbjct: 429  DYRKEMELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTA 488

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
            Q SGKALVSLINEVLDQAK+E GKLELEAV F++RAILDDVLSLFS KSQ KGVELAVY+
Sbjct: 489  QESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVELAVYV 548

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
            SD VPE LIGDPGRFRQIITNLMGNSIKFT+KGHIFVT++LVEEVV SIEV+ E S+S+N
Sbjct: 549  SDHVPELLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVRSIEVDKE-SNSEN 607

Query: 422  TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 481
            TLSG PVAD   SW+GFK F+Q+G    F S S+DL+NLIVSVEDTG+GIPLE+Q  I+T
Sbjct: 608  TLSGSPVADSRRSWEGFKAFSQEGPLGSFSSPSSDLVNLIVSVEDTGEGIPLESQPLIYT 667

Query: 482  PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 541
            PFMQVGPSISR HGGTGIGLSISK LVG M GEIGFVSIP  GSTFTFTAVF NG  +SN
Sbjct: 668  PFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKTGSTFTFTAVFTNGHCSSN 727

Query: 542  EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
            E   QQ+NNQP+S SSEF+GM AL++DPR +RAKVSRYHIQRLGI VE+VSD  Q LS I
Sbjct: 728  ECKVQQINNQPHSASSEFEGMTALIIDPRSVRAKVSRYHIQRLGIHVEMVSDLKQGLSTI 787

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
            ++G+ IINM+L+EQEVW++D  +S+ FVNN R++  G   KLF+L NS SS +A+ +  G
Sbjct: 788  SNGNIIINMVLIEQEVWDRDLGLSSHFVNNTRRIDQGVPPKLFILVNSSSSFKASVNL-G 846

Query: 662  VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 721
            V  P VI KPLR+SMLAASLQRAMGV NKG     EL S+SLRHLL GRKILIVDDN+VN
Sbjct: 847  VHNPIVITKPLRASMLAASLQRAMGVQNKGAPHR-ELQSLSLRHLLRGRKILIVDDNSVN 905

Query: 722  LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
              VAA  LK+YGA VVCV  GK A   L PPHQFDACFMDIQMPEMDGFEATK +REME 
Sbjct: 906  RAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFEATKRVREMED 965

Query: 782  NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
            + N      EVS++ +EN++N+HVPILAMTADVI AT+EECL+ GMDGYVSKPFEAEQLY
Sbjct: 966  SVNR-----EVSMDDFENITNWHVPILAMTADVIHATHEECLKWGMDGYVSKPFEAEQLY 1020

Query: 842  REVSRFF 848
            REVSRFF
Sbjct: 1021 REVSRFF 1027


>gi|356525172|ref|XP_003531201.1| PREDICTED: histidine kinase 3-like [Glycine max]
          Length = 1030

 Score = 1291 bits (3341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/847 (75%), Positives = 720/847 (85%), Gaps = 15/847 (1%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFAQDTVS 61
            +RVL SERE+FEKQQGWTIKRMDT E NPVHKD       EPSP++EEYAPVIFAQDT++
Sbjct: 189  VRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPVQEEYAPVIFAQDTIA 248

Query: 62   HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
            HVIS+++LSGKEDRENVLRAR SGKGVLTAPFRLLKTNRLGVILTFAVYKR+LPSN TPN
Sbjct: 249  HVISVNVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNTTPN 308

Query: 122  ERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLW 181
            ERI+ATDGYLGG+FD+ESLVEKLL QLASKQT+ V+VYD TN +HPI+MYGSN S D  +
Sbjct: 309  ERIQATDGYLGGVFDVESLVEKLLQQLASKQTVIVHVYDTTNRTHPIAMYGSNESGDFFY 368

Query: 182  LVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
             VSTLNFGDPFRKHEM CRFKQK PWP +AI+TSIGILVIA LVG+IF ATVNRIAKVE+
Sbjct: 369  HVSTLNFGDPFRKHEMHCRFKQKPPWPWVAITTSIGILVIALLVGYIFHATVNRIAKVED 428

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            DY  MMELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LDVTQQ+YVRTA
Sbjct: 429  DYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTA 488

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
            Q SGKALVSLINEVLDQAK+E GKLELEAV F++RAILDDVLSLFS KSQ K VELAVY+
Sbjct: 489  QESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKRVELAVYV 548

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
            SD VPE LIGDPGRFRQIITNLMGNSIKFT+KGHIFVT++LVEEVV SIEV+ E S+S+N
Sbjct: 549  SDHVPELLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVRSIEVDKE-SNSEN 607

Query: 422  TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 481
            TLSG PVAD   SW+GFK F+Q+G    F S S DL+NLIVSVEDTG+GIPLE+Q  IFT
Sbjct: 608  TLSGSPVADSRRSWEGFKAFSQEGPLGSFSSPSNDLVNLIVSVEDTGEGIPLESQPLIFT 667

Query: 482  PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 541
            PFMQVG SISR HGGTGIGLSISK LVG M GEIGFVSIP IGSTFTFTAVF NG  +S+
Sbjct: 668  PFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKIGSTFTFTAVFTNGHRSSS 727

Query: 542  EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
            E   QQ+NNQP S SSEF+GM AL++DPR +RA+VS YHIQRLGI VE+VSD  Q LS I
Sbjct: 728  ECKIQQINNQPQSASSEFEGMTALIIDPRSVRAEVSGYHIQRLGIHVEMVSDLKQGLSTI 787

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
            ++G+ ++NM+L+EQEVW++D  +S+ FVNN R++  G   KLF+L NS SS +A+ +  G
Sbjct: 788  SNGNVVVNMVLIEQEVWDRDLGLSSHFVNNTRRIDHGVPPKLFILVNSSSSFKASVNL-G 846

Query: 662  VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 721
            V  P+VI KPLR+SMLAASLQRAMGV NKG     EL S+SLRHLL GRKILIVDDN VN
Sbjct: 847  VHNPTVITKPLRASMLAASLQRAMGVQNKGAPHR-ELQSLSLRHLLRGRKILIVDDNGVN 905

Query: 722  LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
              VAA  LK+YGA VVCV  GK A   L PPHQFDACFMDIQMPEMDGFEATK IREME 
Sbjct: 906  RAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFEATKRIREMED 965

Query: 782  NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
            + N      EVS++ +EN++N+HVPILAMTADVIQAT+EECLR GMDGYVSKPFEAEQLY
Sbjct: 966  SVNR-----EVSMDDFENITNWHVPILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLY 1020

Query: 842  REVSRFF 848
            REVSRFF
Sbjct: 1021 REVSRFF 1027


>gi|224053503|ref|XP_002297846.1| histidine kinase cytokinin receptor [Populus trichocarpa]
 gi|190148359|gb|ACE63262.1| histidine kinase 3A [Populus trichocarpa]
 gi|222845104|gb|EEE82651.1| histidine kinase cytokinin receptor [Populus trichocarpa]
          Length = 1020

 Score = 1272 bits (3292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/851 (75%), Positives = 711/851 (83%), Gaps = 31/851 (3%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFAQDTVS 61
            +RVL SERE+FEKQQGWTIKRMD+FE NPVHKD       EPSPI+EEYAPVIFAQDTV+
Sbjct: 186  VRVLHSEREQFEKQQGWTIKRMDSFEQNPVHKDDNAPKALEPSPIQEEYAPVIFAQDTVA 245

Query: 62   HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
            HV+SLDMLSG EDRENVLRARASGKGVLTAPFRLLKT RLGVILTFAVYK +LPSNATPN
Sbjct: 246  HVVSLDMLSGTEDRENVLRARASGKGVLTAPFRLLKTKRLGVILTFAVYKTDLPSNATPN 305

Query: 122  ERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLW 181
            ERI+ATDGYLGGIFDIESLVEKLL QLASKQTI VNVYD TN S PISMYGSNVSDDGL 
Sbjct: 306  ERIQATDGYLGGIFDIESLVEKLLQQLASKQTILVNVYDTTNQSCPISMYGSNVSDDGLE 365

Query: 182  LVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
             VS LN  DPFRKHEMRCRFKQK PWP LAI+TSIGILVIA L+G+IF AT+NRIAKVE+
Sbjct: 366  HVSALNLEDPFRKHEMRCRFKQKPPWPWLAITTSIGILVIALLIGYIFHATMNRIAKVED 425

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            D H MMEL K+AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD  QQDYVRTA
Sbjct: 426  DCHKMMELTKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDANQQDYVRTA 485

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
            Q SGKALVSLINEVLDQAK+ESGK+ELE + F+LRAI+DDVL+LFSGK+ +KG+ELAVY+
Sbjct: 486  QDSGKALVSLINEVLDQAKIESGKIELEEMQFDLRAIMDDVLALFSGKAHEKGIELAVYV 545

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
            SD VPE LIGDPGRFRQIITNLMGNSIKFT+KGHIF+TV+ VEEV+DSI+VETE SSS N
Sbjct: 546  SDGVPEMLIGDPGRFRQIITNLMGNSIKFTKKGHIFLTVHPVEEVMDSIDVETE-SSSLN 604

Query: 422  TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 481
            TLSG PVADR  S  GFK F+++GS+     SS+DL+NLIVSVEDTG+GIPLEAQ R+FT
Sbjct: 605  TLSGLPVADRRRSCAGFKIFSREGSSHTLSPSSSDLVNLIVSVEDTGEGIPLEAQPRVFT 664

Query: 482  PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 541
            PFMQV PSISR +GGTGIGLSISK LVG M GEIGF SIP+ GSTFTFTAVF NG S SN
Sbjct: 665  PFMQVDPSISRKYGGTGIGLSISKCLVGLMNGEIGFASIPDTGSTFTFTAVFRNGCSNSN 724

Query: 542  E--HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS 599
            +     Q++ NQ N+  SEFQ M ALVVDP+P+RA VSRY IQRLGI VE+VSD  Q LS
Sbjct: 725  DSKQQKQRIKNQCNTTPSEFQDMTALVVDPKPVRANVSRYQIQRLGIHVELVSDLNQGLS 784

Query: 600  QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTST 659
             I++ ++I  MI VEQEVWEKD+S+S  FVNNL+K+  G  SKLFLL NS+SSSR NT+T
Sbjct: 785  IISNENRIFKMIFVEQEVWEKDSSISAHFVNNLQKIERGVSSKLFLLGNSLSSSRTNTAT 844

Query: 660  DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 719
             G    SVI KPL++SMLAASLQRAMG GNKGN RN E PS+SL + L+GRKILIVDDN 
Sbjct: 845  SGAYTLSVITKPLKASMLAASLQRAMG-GNKGNPRNGEHPSLSLCNHLVGRKILIVDDNK 903

Query: 720  VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
            VNL VAAA LK+YGA V+C + GK A +LL PPHQFDACFMDIQMPEMDGFEAT+ IR+M
Sbjct: 904  VNLIVAAAALKKYGAEVICADSGKMAIKLLKPPHQFDACFMDIQMPEMDGFEATRRIRDM 963

Query: 780  EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
            E                    SN H+PILAMTADVIQATYEEC R GMDGYVSKPFEAEQ
Sbjct: 964  E--------------------SNGHIPILAMTADVIQATYEECQRCGMDGYVSKPFEAEQ 1003

Query: 840  LYREVSRFFPP 850
            LY+EVSRF  P
Sbjct: 1004 LYQEVSRFLQP 1014


>gi|357462961|ref|XP_003601762.1| Histidine kinase [Medicago truncatula]
 gi|355490810|gb|AES72013.1| Histidine kinase [Medicago truncatula]
          Length = 1047

 Score = 1243 bits (3215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/868 (71%), Positives = 715/868 (82%), Gaps = 41/868 (4%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFAQDTVS 61
            +RVL+SERE+FEKQQGW+IKRMDT E NPVH+D       EPSPI EEYAPVIFAQDT+S
Sbjct: 190  VRVLQSEREQFEKQQGWSIKRMDTMEQNPVHEDDYVPDELEPSPIHEEYAPVIFAQDTIS 249

Query: 62   HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
            HVIS+D+LSGKEDRENVLRAR SGKGVLTAPFRLLKTNRLGVILTFAVYKR+LPSNATPN
Sbjct: 250  HVISIDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPN 309

Query: 122  ERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLW 181
            ERI+ATDGYLGG+F+IESLVEKLL QLASKQT+ VNVYD TN +H I MYGS+VS D  +
Sbjct: 310  ERIQATDGYLGGVFEIESLVEKLLQQLASKQTVLVNVYDTTNQTHSIPMYGSDVSGDEFY 369

Query: 182  LVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
             VS LNFGDPFRKHEM CRFKQK P+P LA  TSIGILVIA LVGHIF ATV+RIAKVE+
Sbjct: 370  HVSFLNFGDPFRKHEMHCRFKQKPPFPRLATGTSIGILVIALLVGHIFHATVSRIAKVED 429

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            DY  MM LKK+AEAADVAKSQFLATVSHEIRTPMNGVLGM++MLMDT+LDVTQQ+YVRTA
Sbjct: 430  DYQEMMVLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMNMLMDTDLDVTQQEYVRTA 489

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE----- 356
            Q SGKALVS+INEVLDQAK+ESGK+ELEAV F++R+I+DDVLSLFS KSQ KGVE     
Sbjct: 490  QGSGKALVSIINEVLDQAKIESGKIELEAVLFDIRSIMDDVLSLFSEKSQGKGVEALRVW 549

Query: 357  --------LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 408
                    LAVY+SD+VP+ LIGDPGRFRQIITNLMGNSIKFT+KGHIFVT++LVEEV  
Sbjct: 550  FYSFLGAKLAVYVSDQVPQQLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVFH 609

Query: 409  SIEVETELSS--SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSA-DLINLIVSVE 465
            SIEVE E +S  +++TLSG+PVAD   SW+GF+ F+ +G    F S+S+ DLI+LIVSVE
Sbjct: 610  SIEVERESTSKDAEHTLSGFPVADGRRSWEGFRAFSHEGPLGSFSSTSSNDLISLIVSVE 669

Query: 466  DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 525
            DTG GIPLE+Q  IFTPFMQVGPSISR HGGTGIGLSISK LVG M GEIGFVS P IGS
Sbjct: 670  DTGDGIPLESQPMIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSEPKIGS 729

Query: 526  TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
            TFTFTAVF N    SNE  +QQ+NNQP+  +SEF GM ALV+DPRP+RA+VSRYHIQRLG
Sbjct: 730  TFTFTAVFTNACPNSNELKTQQINNQPHPATSEFNGMAALVIDPRPVRAEVSRYHIQRLG 789

Query: 586  IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL-----GCGFQ 640
            ++VE+VSD  Q LS +  G   +NMIL+EQEVW++D+S+S+ FVNN+RK+     G G  
Sbjct: 790  VRVEIVSDLKQGLSTVTDGDASVNMILIEQEVWDRDSSISSHFVNNIRKVVEIDKGKGIP 849

Query: 641  SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 700
             KLF+L NS SS RA ++   +  P+V+ KPLR+SMLAASLQRAMGVGNKGN RN E   
Sbjct: 850  PKLFILVNSSSSFRAGSTASCLHNPTVVTKPLRASMLAASLQRAMGVGNKGNPRNGEHQG 909

Query: 701  MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
            +SL+HLL GRKILIVDDN+VN  VAA  LK+YGA VVCV  G +A  +L PPHQFDACFM
Sbjct: 910  LSLKHLLSGRKILIVDDNSVNRTVAAGALKKYGAGVVCVSSGIEAITMLRPPHQFDACFM 969

Query: 761  DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
            DIQMPEMDGFEAT+ IRE+E++  +R        E +      H+PILAMTADV+QAT++
Sbjct: 970  DIQMPEMDGFEATRRIREIENSVKDR--------ELF-----VHLPILAMTADVMQATHQ 1016

Query: 821  ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            EC + GMDGYVSKPFEAEQLYREVS+FF
Sbjct: 1017 ECSKCGMDGYVSKPFEAEQLYREVSKFF 1044


>gi|449445544|ref|XP_004140532.1| PREDICTED: histidine kinase 3-like [Cucumis sativus]
 gi|449518188|ref|XP_004166125.1| PREDICTED: histidine kinase 3-like [Cucumis sativus]
          Length = 1010

 Score = 1243 bits (3215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/848 (74%), Positives = 718/848 (84%), Gaps = 10/848 (1%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFAQDTVS 61
            +RVL S+RE FEKQQGWTIKRMD  E +PVH+D       EPSP ++EYAPVIFAQDT+S
Sbjct: 157  VRVLHSDRERFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTIS 216

Query: 62   HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
            HV+SLDMLSG EDR NVLRARASGKGVLTAPF+L+KTNRLGVILTFAVYKR+LPSNATPN
Sbjct: 217  HVVSLDMLSGVEDRNNVLRARASGKGVLTAPFKLIKTNRLGVILTFAVYKRDLPSNATPN 276

Query: 122  ERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLW 181
            ERI+ATDGYLGG+FDIESLVEKLL QLAS QTI VNVYD TN SHPISMYG +VS+DGL 
Sbjct: 277  ERIQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSEDGLQ 336

Query: 182  LVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
             VS LNFGDP RKHEMRCRFKQK PWP LA++TSIGIL+IA L+G+IF AT+NRIAKVE+
Sbjct: 337  HVSPLNFGDPDRKHEMRCRFKQKQPWPWLAMTTSIGILIIALLLGYIFHATLNRIAKVED 396

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            DYH MM LKK+AE AD+AKSQFLATVSHEIRTPMNGVLGML +LMDT+LDVTQQDYV+TA
Sbjct: 397  DYHEMMVLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTA 456

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
            Q SGKALVSLINEVLDQAK+ESGKLELEA+ FNLRA LDD+LSLFSGKSQ+KG+ELAVY+
Sbjct: 457  QDSGKALVSLINEVLDQAKIESGKLELEAIPFNLRADLDDILSLFSGKSQEKGLELAVYV 516

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
            SD VPETL+GDPGRFRQIITNL+GNSIKFTEKGHIFVTV LV+EV++SI++E E SS  +
Sbjct: 517  SDSVPETLVGDPGRFRQIITNLVGNSIKFTEKGHIFVTVNLVKEVIESIDLEIE-SSKNS 575

Query: 422  TLSGYPVADRCHSWKGFKTFNQDGSTSP-FKSSSADLINLIVSVEDTGQGIPLEAQSRIF 480
            TLSGYPVA+R  SW GF+TF+Q+GST+  F +S  DLINL+VSVEDTG GIPLEAQSRIF
Sbjct: 576  TLSGYPVANRRLSWAGFRTFSQEGSTACHFMTSPPDLINLMVSVEDTGVGIPLEAQSRIF 635

Query: 481  TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTS 540
            TPFMQV PSISRTHGGTGIGLSISK LVG MKGEIGFVS+P IGSTFTFTAVF N S++S
Sbjct: 636  TPFMQVRPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSVPKIGSTFTFTAVFTNCSNSS 695

Query: 541  NEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQ 600
              +N+QQ+ N   S +SEF+GM+ALVVD +PIRAKVSRYHIQRL I VEV+SD  QCLS 
Sbjct: 696  EYNNTQQIKNTSISATSEFKGMRALVVDHQPIRAKVSRYHIQRLAINVEVLSDLNQCLST 755

Query: 601  IASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 660
                   +NMI VEQ++W+++ S S  F+ NLR        KLFLL +SISSS+A+T+  
Sbjct: 756  TTISGSTVNMIFVEQKLWDQNVSTSDHFIKNLRN-SYAVPPKLFLLTSSISSSKASTTVS 814

Query: 661  GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
             V  P+VI+KPLR+ MLAASL R M VG KGN RN ELP +SLR+LLLGRKIL++DDN V
Sbjct: 815  DVFTPTVILKPLRAGMLAASLHRVMNVGIKGNPRNGELPVLSLRNLLLGRKILVIDDNKV 874

Query: 721  NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
            N  VAA  L+RYGA VVC   G+ A +LL PPH FDACFMDIQMPEMDGFEAT+ IRE+E
Sbjct: 875  NRIVAAGALQRYGADVVCENSGRDAIQLLTPPHHFDACFMDIQMPEMDGFEATRRIREIE 934

Query: 781  HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
            H  N+ I+ GE+S EAYEN   + VPILAMTADVIQAT+EECLR GMDGYVSKPFE E+L
Sbjct: 935  HRINDGIQVGELSKEAYENTCYWRVPILAMTADVIQATHEECLRCGMDGYVSKPFEVERL 994

Query: 841  YREVSRFF 848
            YREVS+FF
Sbjct: 995  YREVSQFF 1002


>gi|116109353|gb|ABJ74169.1| histidine kinase 1 [Medicago sativa]
          Length = 1027

 Score = 1236 bits (3197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/855 (72%), Positives = 711/855 (83%), Gaps = 28/855 (3%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFAQDTVS 61
            +RVL+SERE+FEKQQGW+IKRMDT E NPVH+D       EP PI EEYAPVIFAQDT+S
Sbjct: 183  VRVLQSEREQFEKQQGWSIKRMDTMEQNPVHEDDYVPDELEPPPIHEEYAPVIFAQDTIS 242

Query: 62   HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
            HVIS+D+LSGKEDRENVLRAR SGKGVLTAPFRLLKTNRLGVILTFAVYKR+LPSNATPN
Sbjct: 243  HVISIDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPN 302

Query: 122  ERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLW 181
            ERI+ATDGYLGG+F+IESLVEKLL QLASKQT+ VNVYD TN +HPI MYGS+VS D  +
Sbjct: 303  ERIQATDGYLGGVFEIESLVEKLLQQLASKQTVLVNVYDTTNQTHPIPMYGSDVSGDEFY 362

Query: 182  LVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
             VS LNFGDPFRKHEM CRFKQK P+P LA  TSIGILVI  LVGHI  ATV+RIAKVE 
Sbjct: 363  HVSFLNFGDPFRKHEMHCRFKQKPPFPRLATGTSIGILVITLLVGHICHATVSRIAKVES 422

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            DY  MM LKK+AEAADVAKSQFLATVSHEIRTPMNGVLGM++MLMDT+LDVTQQ+YVRTA
Sbjct: 423  DYQEMMVLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMNMLMDTDLDVTQQEYVRTA 482

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
            Q SGKALVS+INEVLDQAK+ESGK+ELEAV F++RAI+DDVLSLFS KSQ KGVELAVY+
Sbjct: 483  QGSGKALVSIINEVLDQAKIESGKIELEAVLFDIRAIMDDVLSLFSEKSQGKGVELAVYV 542

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS--S 419
            SD+VP+ LIGDPGRFRQIITNLMGNSIKFT+KGHIFVT++LVEEV  SIEVE E +S  +
Sbjct: 543  SDQVPQQLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVFHSIEVERESTSKDA 602

Query: 420  KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSA-DLINLIVSVEDTGQGIPLEAQSR 478
            ++TLSG+PVAD   SW+GF+ F+ +G    F S+S+ DLI+LIVSVEDTG GIPLE+Q  
Sbjct: 603  EHTLSGFPVADGRRSWEGFRAFSHEGPLGSFSSTSSNDLISLIVSVEDTGDGIPLESQPM 662

Query: 479  IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS 538
            IFTPFMQVGPSISR HGGTGIGLSISK LVG M GEIGFVS P IGSTFTFTAVF N   
Sbjct: 663  IFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSEPKIGSTFTFTAVFTNACP 722

Query: 539  TSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 598
             SNE  +QQ+NNQP+  +SEF GM ALV+DPRP+RA+VSRYH QRLG++VE+VSD  Q L
Sbjct: 723  NSNELQTQQINNQPHPATSEFNGMAALVIDPRPVRAEVSRYHRQRLGVRVEIVSDLKQGL 782

Query: 599  SQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL-----GCGFQSKLFLLANSISSS 653
            S +  G   INM+L+EQEVWE+D+S+S+ FVNN+RK+     G     KLF+L NS SS 
Sbjct: 783  STVTDGDASINMVLIEQEVWERDSSISSHFVNNIRKIVEVDKGKEIPPKLFILVNSSSSF 842

Query: 654  RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 713
            RA+++   +  P+V+ KPLR+SMLAASLQRAMGVGNKGN RN E   +SL+HLL GRKIL
Sbjct: 843  RASSTASCLHNPTVVTKPLRASMLAASLQRAMGVGNKGNPRNGEHQGLSLKHLLSGRKIL 902

Query: 714  IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
            IVDDN+VN  VAA  LK+YGA VVCV  G +A  +L PPHQFDACFMDIQMPEMDGFEAT
Sbjct: 903  IVDDNSVNRTVAAGALKKYGAGVVCVSSGIEAITMLRPPHQFDACFMDIQMPEMDGFEAT 962

Query: 774  KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
            + IRE+E+N  +R        E +      H+PILAMTADV+QAT++EC + GMDGYVSK
Sbjct: 963  RRIREIENNVKDR--------ELF-----VHLPILAMTADVMQATHQECSKCGMDGYVSK 1009

Query: 834  PFEAEQLYREVSRFF 848
            PFEAEQLYREVS+FF
Sbjct: 1010 PFEAEQLYREVSKFF 1024


>gi|116109372|gb|ABJ74170.1| histidine kinase 1 [Lupinus albus]
          Length = 1043

 Score = 1233 bits (3190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/859 (72%), Positives = 706/859 (82%), Gaps = 31/859 (3%)

Query: 14   SEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFAQDTVSHVISL 66
            SERE+FEKQQGWTIKRMDT E   VHKD       EPS I+EEYAPVIFAQDT+SHVIS+
Sbjct: 189  SEREQFEKQQGWTIKRMDTVEEKQVHKDDYDPEKLEPSHIQEEYAPVIFAQDTLSHVISV 248

Query: 67   DMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEA 126
            D LSGK DRENV+RAR SGKGVLTAPFRLLKTNRLGVILTFAVY R+LPSNATPNERI+A
Sbjct: 249  DTLSGKGDRENVVRARESGKGVLTAPFRLLKTNRLGVILTFAVYSRDLPSNATPNERIQA 308

Query: 127  TDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTL 186
            T+GYLGG+FD+ESLVEKLL QLASKQT+ VNVYDITN +H I MY SNV  D  + VSTL
Sbjct: 309  TNGYLGGVFDVESLVEKLLQQLASKQTVIVNVYDITNHTHHIPMYSSNVLGDTFYHVSTL 368

Query: 187  NFGDPFRKHEMRCR-----------------FKQKAPWPLLAISTSIGILVIASLVGHIF 229
            NFGDPFRKHEM CR                 FKQK P P L+I+TSIGILVIA LVGHIF
Sbjct: 369  NFGDPFRKHEMYCRKSNAAKGACIFILLQNRFKQKPPRPWLSITTSIGILVIALLVGHIF 428

Query: 230  QATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE 289
             ATVNRIAKVE+D   M ELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+
Sbjct: 429  YATVNRIAKVEDDCREMRELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTD 488

Query: 290  LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGK 349
            LDVTQQ++VRTAQ SGKAL+SLINEVLDQAK+E+GKLELEAV F+LRAILDDVLSLFS K
Sbjct: 489  LDVTQQEFVRTAQVSGKALMSLINEVLDQAKIEAGKLELEAVLFDLRAILDDVLSLFSEK 548

Query: 350  SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 409
            SQ+KGVEL VY+SD+VPE LIGDPGRFRQI TNLMGNSIKFT+KGH+FVTV+LVEEVV S
Sbjct: 549  SQEKGVELGVYVSDQVPELLIGDPGRFRQITTNLMGNSIKFTDKGHVFVTVHLVEEVVYS 608

Query: 410  IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469
             +V+ E S+S+NTLSG+PVAD   SW+GFK F+Q+G    F SSS DLINLIVSVEDTG+
Sbjct: 609  TKVDKE-STSENTLSGFPVADSRRSWEGFKAFSQEGPLGSFSSSSGDLINLIVSVEDTGE 667

Query: 470  GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 529
            GIPLEAQ  IFTPFMQVGPSISR HGGTGIGLSISK LV  M GEIGFVSIP IGSTFTF
Sbjct: 668  GIPLEAQPHIFTPFMQVGPSISRKHGGTGIGLSISKCLVHLMSGEIGFVSIPKIGSTFTF 727

Query: 530  TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 589
            TA+F NG  +SNE  +QQ+ NQP+  SSEF+GM A+++D RP+RAKVSRYHIQRLGI VE
Sbjct: 728  TAIFTNGLPSSNECKTQQIINQPHPASSEFKGMTAMIIDHRPVRAKVSRYHIQRLGIHVE 787

Query: 590  VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 649
            +VSD  Q LS +A+ + +INMIL+EQEVW++D+ +S+ FV+N+ K+      K+F+L  S
Sbjct: 788  MVSDLNQGLSNVANANIVINMILIEQEVWDRDSGMSSHFVDNICKIVHVVPPKMFILVKS 847

Query: 650  ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG 709
             + SRA+     V  P+VI KPLR+SMLAASLQR+MG  NKG  RN +LPS+SLRHLL G
Sbjct: 848  -TRSRASAVISSVHDPTVITKPLRASMLAASLQRSMGFQNKGTHRNSDLPSLSLRHLLRG 906

Query: 710  RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
            R+ILIVDDN+VN  VAAA LK+YGA VVCV  GK+A   L PPHQFDACFMDIQMPE+DG
Sbjct: 907  RRILIVDDNSVNRMVAAAALKKYGAEVVCVSSGKEAISSLKPPHQFDACFMDIQMPEIDG 966

Query: 770  FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
            FEAT+ IR+ME + N+     E+S+   +NVSN+HVPIL MTADVIQAT E CLR GMDG
Sbjct: 967  FEATRTIRDMELSVNS-----EMSVYDIDNVSNWHVPILTMTADVIQATQEACLRCGMDG 1021

Query: 830  YVSKPFEAEQLYREVSRFF 848
            YVSKPFEAEQLY EVSRFF
Sbjct: 1022 YVSKPFEAEQLYIEVSRFF 1040


>gi|297845680|ref|XP_002890721.1| hypothetical protein ARALYDRAFT_472928 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297336563|gb|EFH66980.1| hypothetical protein ARALYDRAFT_472928 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1039

 Score = 1223 bits (3165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/847 (73%), Positives = 694/847 (81%), Gaps = 16/847 (1%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFAQDTVS 61
            +RVL SEREEFE+QQGWTI++M + E NPVHKD       EPSP++EEYAPVIFAQDTVS
Sbjct: 194  MRVLHSEREEFERQQGWTIRKMYSLEQNPVHKDDYDLEALEPSPVQEEYAPVIFAQDTVS 253

Query: 62   HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
            HV+SLDMLSGKEDRENVLRAR+SGKGVLTAPF L+KTNRLGVILTFAVYKR+LPSNATP 
Sbjct: 254  HVVSLDMLSGKEDRENVLRARSSGKGVLTAPFPLIKTNRLGVILTFAVYKRDLPSNATPK 313

Query: 122  ERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLW 181
            ERIEAT+GYLGG+FDIESLVE LL QLASKQTI VNVYD TN S PISMYGSNVS DGL 
Sbjct: 314  ERIEATNGYLGGVFDIESLVENLLQQLASKQTILVNVYDTTNHSQPISMYGSNVSADGLE 373

Query: 182  LVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
             VS L FGDPFRKHEMRCRFKQK PWP+L++ TS GILVIA LV HI  ATV+RI KVEE
Sbjct: 374  RVSPLIFGDPFRKHEMRCRFKQKPPWPVLSMVTSFGILVIALLVAHIIHATVSRIHKVEE 433

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            D   M +LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELDVTQQDYVRTA
Sbjct: 434  DCDKMKQLKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELDVTQQDYVRTA 493

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
            QASGKALVSLINEVLDQAK+ESGKLELE V F+LR ILDDVLSLFS KSQ KGVELAVYI
Sbjct: 494  QASGKALVSLINEVLDQAKIESGKLELEEVRFDLRGILDDVLSLFSSKSQQKGVELAVYI 553

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
            SDRVP+ LIGDPGRFRQI+TNLMGNSIKFTEKGHIFVTV+LVEE+ +SI+ ET  SS ++
Sbjct: 554  SDRVPDMLIGDPGRFRQILTNLMGNSIKFTEKGHIFVTVHLVEELFESIDGETA-SSPES 612

Query: 422  TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 481
            TLSG PVADR  SW+ FK F+ +  +  F+ S  D INLIVSVEDTG GIPLEAQSRIFT
Sbjct: 613  TLSGLPVADRQRSWENFKAFSNEHRS--FEPSPLD-INLIVSVEDTGVGIPLEAQSRIFT 669

Query: 482  PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 541
            PFMQVGPSISRTHGGTGIGLSISK LVG MKGEIGF S P +GSTFTFTAVF NG  T+ 
Sbjct: 670  PFMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFSSTPKVGSTFTFTAVFSNGMQTTE 729

Query: 542  EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
              N  Q NNQP  + SEF+GMKA+VVD RP RAKVS YH QRLGI+VEVV    Q L  +
Sbjct: 730  RKNDPQNNNQP--IFSEFRGMKAVVVDHRPARAKVSWYHFQRLGIRVEVVPRVEQALRYL 787

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
              G+  +NMIL+EQE+W K+  V   F+  L+K       KL LLANS+ SS +     G
Sbjct: 788  KIGTTTVNMILIEQEIWNKEAEV---FIKKLQKDPLFLSPKLILLANSVESSISEALCTG 844

Query: 662  VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 721
            +  P VI+KPLR+SMLAA+LQR +G+G +   ++   P++ LR+LLLGRKILIVDDNNVN
Sbjct: 845  IDPPIVIVKPLRASMLAATLQRGLGIGIREPPQHKGPPALILRNLLLGRKILIVDDNNVN 904

Query: 722  LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
            L+VAA  LK+YGA VVC E G KA  LL PPH+FDACFMDIQMPEMDGFEAT+ IR+ME 
Sbjct: 905  LRVAAGALKKYGADVVCAESGIKAISLLKPPHEFDACFMDIQMPEMDGFEATRRIRDMEE 964

Query: 782  NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
              N RI+ GE  I    N +++H+P+LAMTADVIQAT+EECL+ GMDGYVSKPFEAEQLY
Sbjct: 965  EMNKRIKNGEALIVENGNKTSWHLPVLAMTADVIQATHEECLKCGMDGYVSKPFEAEQLY 1024

Query: 842  REVSRFF 848
            REVSRFF
Sbjct: 1025 REVSRFF 1031


>gi|18396292|ref|NP_564276.1| histidine kinase 3 [Arabidopsis thaliana]
 gi|75168994|sp|Q9C5U1.1|AHK3_ARATH RecName: Full=Histidine kinase 3; AltName: Full=Arabidopsis histidine
            kinase 3; Short=AtHK3; AltName: Full=Protein AUTHENTIC
            HIS-KINASE 3; AltName: Full=Protein ORESARA 12
 gi|13537198|dbj|BAB40775.1| histidine kinase [Arabidopsis thaliana]
 gi|332192685|gb|AEE30806.1| histidine kinase 3 [Arabidopsis thaliana]
          Length = 1036

 Score = 1211 bits (3134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 615/847 (72%), Positives = 692/847 (81%), Gaps = 18/847 (2%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFAQDTVS 61
            +RVL SEREEFE+QQGWTI++M + E NPVHKD       EPSP++EEYAPVIFAQDTVS
Sbjct: 193  MRVLHSEREEFERQQGWTIRKMYSLEQNPVHKDDYDLEALEPSPVQEEYAPVIFAQDTVS 252

Query: 62   HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
            HV+SLDMLSGKEDRENVLRAR+SGKGVLTAPF L+KTNRLGVILTFAVYKR+LPSNATP 
Sbjct: 253  HVVSLDMLSGKEDRENVLRARSSGKGVLTAPFPLIKTNRLGVILTFAVYKRDLPSNATPK 312

Query: 122  ERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLW 181
            ERIEAT+GYLGG+FDIESLVE LL QLASKQTI VNVYDITN S PISMYG+NVS DGL 
Sbjct: 313  ERIEATNGYLGGVFDIESLVENLLQQLASKQTILVNVYDITNHSQPISMYGTNVSADGLE 372

Query: 182  LVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
             VS L FGDP RKHEMRCRFKQK PWP+L++ TS GILVIA LV HI  ATV+RI KVEE
Sbjct: 373  RVSPLIFGDPLRKHEMRCRFKQKPPWPVLSMVTSFGILVIALLVAHIIHATVSRIHKVEE 432

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            D   M +LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELDVTQQDYVRTA
Sbjct: 433  DCDKMKQLKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELDVTQQDYVRTA 492

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
            QASGKALVSLINEVLDQAK+ESGKLELE V F+LR ILDDVLSLFS KSQ KGVELAVYI
Sbjct: 493  QASGKALVSLINEVLDQAKIESGKLELEEVRFDLRGILDDVLSLFSSKSQQKGVELAVYI 552

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
            SDRVP+ LIGDPGRFRQI+TNLMGNSIKFTEKGHIFVTV+LV+E+ +SI+ ET  SS ++
Sbjct: 553  SDRVPDMLIGDPGRFRQILTNLMGNSIKFTEKGHIFVTVHLVDELFESIDGETA-SSPES 611

Query: 422  TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 481
            TLSG PVADR  SW+ FK F+ +G  S F+ S  D INLIVSVEDTG GIP+EAQSRIFT
Sbjct: 612  TLSGLPVADRQRSWENFKAFSSNGHRS-FEPSPPD-INLIVSVEDTGVGIPVEAQSRIFT 669

Query: 482  PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 541
            PFMQVGPSISRTHGGTGIGLSISK LVG MKGEIGF S P +GSTFTFTAVF NG   + 
Sbjct: 670  PFMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFSSTPKVGSTFTFTAVFSNGMQPAE 729

Query: 542  EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
              N    NNQP  + SEF+GMKA+VVD RP RAKVS YH QRLGI+VEVV    Q L  +
Sbjct: 730  RKND---NNQP--IFSEFRGMKAVVVDHRPARAKVSWYHFQRLGIRVEVVPRVEQALHYL 784

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
              G+  +NMIL+EQE+W ++      F+  L+K       KL LLANS+ SS +     G
Sbjct: 785  KIGTTTVNMILIEQEIWNREADD---FIKKLQKDPLFLSPKLILLANSVESSISEALCTG 841

Query: 662  VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 721
            +  P VI+KPLR+SMLAA+LQR +G+G +   ++   P++ LR+LLLGRKILIVDDNNVN
Sbjct: 842  IDPPIVIVKPLRASMLAATLQRGLGIGIREPPQHKGPPALILRNLLLGRKILIVDDNNVN 901

Query: 722  LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
            L+VAA  LK+YGA VVC E G KA  LL PPH+FDACFMDIQMPEMDGFEAT+ IR+ME 
Sbjct: 902  LRVAAGALKKYGADVVCAESGIKAISLLKPPHEFDACFMDIQMPEMDGFEATRRIRDMEE 961

Query: 782  NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
              N RI+ GE  I    N +++H+P+LAMTADVIQAT+EECL+ GMDGYVSKPFEAEQLY
Sbjct: 962  EMNKRIKNGEALIVENGNKTSWHLPVLAMTADVIQATHEECLKCGMDGYVSKPFEAEQLY 1021

Query: 842  REVSRFF 848
            REVSRFF
Sbjct: 1022 REVSRFF 1028


>gi|9802528|gb|AAF99730.1|AC004557_9 F17L21.11 [Arabidopsis thaliana]
          Length = 1092

 Score = 1157 bits (2994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/861 (69%), Positives = 674/861 (78%), Gaps = 50/861 (5%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFAQDTVS 61
            +RVL SEREEFE+QQGWTI++M + E NPVHKD       EPSP++EEYAPVIFAQDTVS
Sbjct: 193  MRVLHSEREEFERQQGWTIRKMYSLEQNPVHKDDYDLEALEPSPVQEEYAPVIFAQDTVS 252

Query: 62   HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
            HV+SLDMLSGKEDRENVLRAR+SGKGVLTAPF L+KTNRLGVILTFAVYKR+LPSNATP 
Sbjct: 253  HVVSLDMLSGKEDRENVLRARSSGKGVLTAPFPLIKTNRLGVILTFAVYKRDLPSNATPK 312

Query: 122  ERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLW 181
            ERIEAT+GYLGG+FDIESLVE LL QLASKQTI VNVYDITN S PISMYG+NVS DGL 
Sbjct: 313  ERIEATNGYLGGVFDIESLVENLLQQLASKQTILVNVYDITNHSQPISMYGTNVSADGLE 372

Query: 182  LVSTLNFGDPFRKHEMRCR--------------------------------FKQKAPWPL 209
             VS L FGDP RKHEMRCR                                FKQK PWP+
Sbjct: 373  RVSPLIFGDPLRKHEMRCRYLQLAHTYVCNFFLFARIQVLTFCCELLPLCRFKQKPPWPV 432

Query: 210  LAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSH 269
            L++ TS GILVIA LV HI  ATV+RI KVEED   M +LKKKAEAADVAKSQFLATVSH
Sbjct: 433  LSMVTSFGILVIALLVAHIIHATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATVSH 492

Query: 270  EIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 329
            EIRTPMNGVLGML MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK+ESGKLELE
Sbjct: 493  EIRTPMNGVLGMLHMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELE 552

Query: 330  AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK 389
             V F+LR ILDDVLSLFS KSQ KGVELAVYISDRVP+ LIGDPGRFRQI+TNLMGNSIK
Sbjct: 553  EVRFDLRGILDDVLSLFSSKSQQKGVELAVYISDRVPDMLIGDPGRFRQILTNLMGNSIK 612

Query: 390  FTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 449
            FTEKGHIFVTV+LV+E+ +SI+ ET  SS ++TLSG PVADR  SW+ FK F+ +G  S 
Sbjct: 613  FTEKGHIFVTVHLVDELFESIDGETA-SSPESTLSGLPVADRQRSWENFKAFSSNGHRS- 670

Query: 450  FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVG 509
            F+ S  D INLIVSVEDTG GIP+EAQSRIFTPFMQVGPSISRTHGGTGIGLSISK LVG
Sbjct: 671  FEPSPPD-INLIVSVEDTGVGIPVEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKCLVG 729

Query: 510  RMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 569
             MKGEIGF S P +GSTFTFTAVF NG   +   N    NNQP  + SEF+GMKA+VVD 
Sbjct: 730  LMKGEIGFSSTPKVGSTFTFTAVFSNGMQPAERKND---NNQP--IFSEFRGMKAVVVDH 784

Query: 570  RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFV 629
            RP RAKVS YH QRLGI+VEVV    Q L  +  G+  +NMIL+EQE+W ++      F+
Sbjct: 785  RPARAKVSWYHFQRLGIRVEVVPRVEQALHYLKIGTTTVNMILIEQEIWNREADD---FI 841

Query: 630  NNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN 689
              L+K       KL LLANS+ SS +     G+  P VI+KPLR+SMLAA+LQR +G+G 
Sbjct: 842  KKLQKDPLFLSPKLILLANSVESSISEALCTGIDPPIVIVKPLRASMLAATLQRGLGIGI 901

Query: 690  KGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 749
            +   ++   P++ LR+LLLGRKILIVDDNNVNL+VAA  LK+YGA VVC E G KA  LL
Sbjct: 902  REPPQHKGPPALILRNLLLGRKILIVDDNNVNLRVAAGALKKYGADVVCAESGIKAISLL 961

Query: 750  MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 809
             PPH+FDACFMDIQMPEMDGFEAT+ IR+ME   N RI+ GE  I    N +++H+P+LA
Sbjct: 962  KPPHEFDACFMDIQMPEMDGFEATRRIRDMEEEMNKRIKNGEALIVENGNKTSWHLPVLA 1021

Query: 810  MTADVIQATYEECLRSGMDGY 830
            MTADVIQAT+EECL+ GMDGY
Sbjct: 1022 MTADVIQATHEECLKCGMDGY 1042


>gi|89892466|gb|ABD79028.1| histidine kinase SHK278 [Striga asiatica]
          Length = 1002

 Score = 1089 bits (2817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/850 (68%), Positives = 653/850 (76%), Gaps = 54/850 (6%)

Query: 9   IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFAQDTVS 61
           +RVL SERE+FE QQGWTIKRMD  E NPVH D       EPS ++EEYAPVIFAQ+TV+
Sbjct: 186 VRVLHSEREQFEAQQGWTIKRMDKIEKNPVHDDKYNQADLEPSLVQEEYAPVIFAQETVA 245

Query: 62  HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
           HVIS+DMLSGKEDRENVLRAR SGKGVLTAPFRLLKTNRLGVILTFAVYKRELP +A  +
Sbjct: 246 HVISVDMLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRELPPDAKLS 305

Query: 122 ERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLW 181
           +RI+ T G   G        E  LHQLASKQTI VNVYD+TN + PISMYGSN S DGL 
Sbjct: 306 DRIQETAGVACG--------ENSLHQLASKQTILVNVYDMTNSTDPISMYGSNPSSDGLH 357

Query: 182 LVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
            VS+LNFGDPFRKHEM CRFKQK PWPL AI TS+GILVI  LV  I  ATVNRIAKVE+
Sbjct: 358 RVSSLNFGDPFRKHEMHCRFKQKQPWPLAAIFTSVGILVIDMLVAQIIYATVNRIAKVED 417

Query: 242 DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
           DYH MMELK++AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT LD TQQDYVRTA
Sbjct: 418 DYHQMMELKRRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTRLDETQQDYVRTA 477

Query: 302 QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
           + SGKALVSLINEVLDQAK+ESGKLELEAVSF+LRAILDDVLSLFSGKSQDK VELAVY+
Sbjct: 478 RESGKALVSLINEVLDQAKIESGKLELEAVSFDLRAILDDVLSLFSGKSQDKKVELAVYV 537

Query: 362 SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
           S +VP TLIGDPGRFRQI+TNL+GNSIKFT+KGHIFVTVYLVEEV   +E E E  SS  
Sbjct: 538 SSKVPSTLIGDPGRFRQIVTNLVGNSIKFTDKGHIFVTVYLVEEV---METEAETGSS-- 592

Query: 422 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 481
            LSG PV DR  SW  F+ F+QD +T P   SS D +N++VSVEDTGQGIP+EAQSR+F 
Sbjct: 593 -LSGLPVVDRRRSWSRFRVFSQDNNT-PLAGSSPDQVNVMVSVEDTGQGIPVEAQSRVFN 650

Query: 482 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 541
           PFMQVGPSI+RTHGGTGIGLSISK LV  MKGEIG  S P +GSTFTFTAVF        
Sbjct: 651 PFMQVGPSITRTHGGTGIGLSISKCLVQLMKGEIGLASTPQVGSTFTFTAVF-------T 703

Query: 542 EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
               QQ   QPN  SSEF G +AL+VD  P+RAKVSRYHIQRLGIQVEVV +    L + 
Sbjct: 704 AEQQQQQQQQPN--SSEFHGTRALLVDSNPVRAKVSRYHIQRLGIQVEVVPEVGPGLKK- 760

Query: 602 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG-FQSKLFLLANSISSSRANTSTD 660
               K + ++ VE+E+WE+          N+ +LG G +Q K+ +L+NS           
Sbjct: 761 ----KPVQIVFVEEEMWER----------NVEELGKGSWQPKILILSNS-----PGIGPP 801

Query: 661 GVSIPSVIMKPLRSSMLAASLQRAMG--VGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
            V   +V++KPLR SM+ A+LQRAMG   GN+G          SL  LL GR+IL+VDDN
Sbjct: 802 PVPAVAVVVKPLRVSMVGATLQRAMGGLRGNRGTQDLLHKKLSSLSGLLQGRRILVVDDN 861

Query: 719 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
            VNL+VAA  LK+YGA VV  ERGK+A  LL PPH F ACFMDIQMPEMDGFEAT+ IR+
Sbjct: 862 RVNLRVAAGCLKKYGADVVHAERGKEAISLLTPPHLFHACFMDIQMPEMDGFEATRRIRD 921

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
           +E   N  I  G +S+E+Y NVSN+HVPILAMTADVIQAT EEC + GMDGYVSKPFEA+
Sbjct: 922 IESGINKGIEDGRLSLESYGNVSNWHVPILAMTADVIQATSEECSKCGMDGYVSKPFEAD 981

Query: 839 QLYREVSRFF 848
           QLYREVSRFF
Sbjct: 982 QLYREVSRFF 991


>gi|444737612|emb|CCL97997.1| histidine kinase 2, putative, expressed [Musa balbisiana]
          Length = 999

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/823 (66%), Positives = 653/823 (79%), Gaps = 24/823 (2%)

Query: 9   IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIE--EEYAPVIFAQDTVSHVISL 66
           ++VLRSERE+FEKQQ W IKRMD+ E  P  ++E + +E  +EYAPVIFAQDT  HVIS 
Sbjct: 170 VKVLRSEREQFEKQQRWKIKRMDSTEQPPA-REEDADLENRDEYAPVIFAQDTYKHVISF 228

Query: 67  DMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEA 126
           DML+GKEDREN+LRAR SGKGVLTAPFRLLK+ RLGVILT+AVYK EL S ATP ERI+A
Sbjct: 229 DMLTGKEDRENILRARESGKGVLTAPFRLLKSRRLGVILTYAVYKSELTSKATPAERIQA 288

Query: 127 TDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTL 186
             GYLGGIFD+E+LV+KLLHQLA K ++ VNVYD TN   PI MYGSN+++ GL+ +STL
Sbjct: 289 AIGYLGGIFDVEALVDKLLHQLACKHSMMVNVYDKTNPDEPIIMYGSNMTNVGLYHISTL 348

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGM 246
           NFGDP RKHEM CRFKQK+P P LAI+TSIG LVIA LVG+IF ATV+RIAKVE+DY  M
Sbjct: 349 NFGDPIRKHEMHCRFKQKSPLPWLAITTSIGTLVIALLVGYIFHATVSRIAKVEDDYRQM 408

Query: 247 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGK 306
           MELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD+TQ+DYVRTAQASGK
Sbjct: 409 MELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDITQEDYVRTAQASGK 468

Query: 307 ALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVP 366
           ALVSLINEVLDQAK+ESGKLELEAV F+LRA+LDD+LSLF GK+Q+KG+ELAVY+SD+VP
Sbjct: 469 ALVSLINEVLDQAKIESGKLELEAVPFDLRAVLDDILSLFYGKAQEKGLELAVYVSDQVP 528

Query: 367 ETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGY 426
           + L+GD GR RQIITNLMGNSIKFTE+GHI++TV++ EEV++S++ E E+ S+ +TL G+
Sbjct: 529 DVLVGDHGRIRQIITNLMGNSIKFTERGHIYLTVHIFEEVLNSLDKEIEVHST-DTLCGF 587

Query: 427 PVADRCHSWKGFKTFNQD--GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
           PVA+R  SW+ FK F  +   S     S+S++ INLI+SVEDTG GIPLEAQSR+FTPFM
Sbjct: 588 PVANRRRSWESFKNFKLELPASDPSLLSTSSNHINLIISVEDTGVGIPLEAQSRVFTPFM 647

Query: 485 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
           QVGPSISR HGGTGIGLSISK LVG MKGEIGFVS P IGSTFTFT V     + SNE+ 
Sbjct: 648 QVGPSISRIHGGTGIGLSISKCLVGLMKGEIGFVSQPQIGSTFTFTVVLTRACTNSNEYK 707

Query: 545 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
                      SSEF GM ALVVD RP RAKV++YH+QRLG+   +  D  Q LS++ SG
Sbjct: 708 -----------SSEFHGMIALVVDHRPARAKVTKYHLQRLGVNAILEIDPNQVLSRLTSG 756

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ---SKLFLLANSISSSRANTSTDG 661
           +  INM+LVE+E W KD+S+    ++ L+    G Q    K+ LLAN  SS   NTS+  
Sbjct: 757 TSTINMVLVEKETWSKDSSIWPFIISKLK----GNQLDIPKILLLANPTSSVNNNTSSSM 812

Query: 662 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 721
             I ++I KPLR+SML  SL+RAMG G+  + RN  LP +SLR LL  ++IL+VDDN VN
Sbjct: 813 EYISTIITKPLRASMLQVSLRRAMGCGDGEHSRNGRLPQLSLRGLLHEKQILVVDDNIVN 872

Query: 722 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
           L+VA   LK+YGA V C E GKKA  +L PPH+FDACFMDIQMPEMDGFEATK IREME 
Sbjct: 873 LRVAYGALKKYGAEVTCAESGKKAIGMLKPPHKFDACFMDIQMPEMDGFEATKRIREMEA 932

Query: 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 824
           + N +I   EV +E  ENV ++HVPILAMTADVIQAT+EECLR
Sbjct: 933 DINKQIECREVPVETSENVLHWHVPILAMTADVIQATHEECLR 975


>gi|413951477|gb|AFW84126.1| putative histidine kinase family protein [Zea mays]
          Length = 1007

 Score = 1061 bits (2744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/849 (63%), Positives = 652/849 (76%), Gaps = 24/849 (2%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFE-----HNPVHKDEPSPIE--EEYAPVIFAQDTVS 61
            +RV  +ERE+FE+QQGW+IK+M + +       P + ++    E  EEYAPVIFAQD   
Sbjct: 167  VRVTHAEREQFERQQGWSIKKMYSSKTKKQSQGPGNAEDAEVREPAEEYAPVIFAQDAYK 226

Query: 62   HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
            HVIS D+LSG +DR+NVLRAR SGKGVLTAPF+LL  NRLGVI T+AVYK ELP NA P 
Sbjct: 227  HVISFDLLSGADDRDNVLRARESGKGVLTAPFKLL-NNRLGVISTYAVYKYELPPNARPQ 285

Query: 122  ERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLW 181
            ERI+A  GYLGGIFDIE+LV+KLLHQLA KQ+I VNVYD TN    ISMYGSN +  G+ 
Sbjct: 286  ERIQAAIGYLGGIFDIEALVDKLLHQLAGKQSIMVNVYDTTN-DRRISMYGSNDTGSGMC 344

Query: 182  LVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
             VSTLNFGDP RKHEM CRF Q  PWP +AI+TSIG LVIA L+G+I  AT  RIA+VE+
Sbjct: 345  QVSTLNFGDPSRKHEMHCRFIQSPPWPWMAITTSIGTLVIALLIGYIIYATAKRIARVED 404

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            D+  M  LKK+AE AD+AKSQFLATVSHEIRTPMNGVLGML MLMDT+LD TQQDYVRTA
Sbjct: 405  DFQEMSVLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTA 464

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
            QASGKALVSLINEVLDQAK+ESGKLELEAV F+LR + DD+LSLF GK+Q+KG+ELAV++
Sbjct: 465  QASGKALVSLINEVLDQAKIESGKLELEAVPFDLRTVCDDILSLFCGKAQEKGLELAVFV 524

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
            SD+VP+ LIGDPGR RQIITNL+GNSIKFTEKGHI++TV++VEE+++ +EVET  + S N
Sbjct: 525  SDQVPQALIGDPGRIRQIITNLVGNSIKFTEKGHIYLTVHVVEEIMNCLEVETG-TQSAN 583

Query: 422  TLSGYPVADRCHSWKGFKTFNQDGSTS--PFKSSSADLINLIVSVEDTGQGIPLEAQSRI 479
            TLSGYPVA+R  SW+ F+ F+++ ++S  PF   ++D I+LI+SVEDTG GIP +AQSR+
Sbjct: 584  TLSGYPVANRKRSWENFRVFSRELNSSEMPFAPIASDSISLIISVEDTGVGIPFDAQSRV 643

Query: 480  FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSST 539
            FTPFMQVGPSI+R HGGTGIGLSISK LVG M+GEIGF S P +GSTFTFTAV     S+
Sbjct: 644  FTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGEIGFASKPQVGSTFTFTAVLTRAHSS 703

Query: 540  SNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS 599
             NE+            SSEF+G+ ALVVD RP+RAKV+RYH+QRLG+Q E+ +D  Q +S
Sbjct: 704  RNENK-----------SSEFKGINALVVDHRPVRAKVTRYHLQRLGVQTELTTDLDQYIS 752

Query: 600  QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTST 659
            +I  GS+I  ++L+++E W K++    L V  LR       +KLFLL N  S++++N+  
Sbjct: 753  KINCGSQIAKLVLIDKETWLKESHSMPLLVTKLRNKDQPDSTKLFLLENPKSTAKSNSHI 812

Query: 660  DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 719
                  +VIMKPLR+SML  SL RA+G  +K + RN  L + +L  LL  ++IL+VDDN 
Sbjct: 813  FREFNLNVIMKPLRASMLQVSLHRALGGIDKLHCRNGVLGNSTLGSLLHKKRILVVDDNI 872

Query: 720  VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
            VNLKVAA  LK+YGA V C + GKKA   L PPH FDACFMDIQMPEMDGFEATK IR M
Sbjct: 873  VNLKVAAGALKKYGAEVTCADSGKKAITQLKPPHSFDACFMDIQMPEMDGFEATKRIRVM 932

Query: 780  EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
            E + N +I RGE   E    +  +  PILAMTADVIQAT+E+CL+S MDGYVSKPFE EQ
Sbjct: 933  ERDLNEQIERGEAPPEC-AGLRQWRTPILAMTADVIQATHEQCLKSEMDGYVSKPFEGEQ 991

Query: 840  LYREVSRFF 848
            LYREV+RFF
Sbjct: 992  LYREVARFF 1000


>gi|222619783|gb|EEE55915.1| hypothetical protein OsJ_04593 [Oryza sativa Japonica Group]
          Length = 1001

 Score = 1060 bits (2742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/852 (62%), Positives = 649/852 (76%), Gaps = 28/852 (3%)

Query: 9   IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIE----------EEYAPVIFAQD 58
           +RV   ERE+FE+QQGW IK+M +  +       P P E          EEYAPVIFAQD
Sbjct: 159 VRVTHGEREQFERQQGWAIKKMYSSSNKKQSSPGPGPGEAAVAEIREPAEEYAPVIFAQD 218

Query: 59  TVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNA 118
              HVIS DMLSG EDR+N+LRAR SGKGVLTAPF+LL  NRLGVILT+ VYK ELP+ A
Sbjct: 219 AYKHVISFDMLSGNEDRDNILRARKSGKGVLTAPFKLL-NNRLGVILTYTVYKYELPAYA 277

Query: 119 TPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDD 178
            P+ERI+A  GYLGGIFDI++LVEKLL QLAS+++I VNVYD TN S PISMYG + +  
Sbjct: 278 RPHERIQAAIGYLGGIFDIQALVEKLLKQLASQESIMVNVYDTTNES-PISMYGDD-TGS 335

Query: 179 GLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAK 238
           G+  VS LNFGDP RKHEM CRF++K PWP LAI++S G LVIA L GHIFQATV+RIAK
Sbjct: 336 GMCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAITSSFGTLVIALLTGHIFQATVHRIAK 395

Query: 239 VEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 298
           VE+D+H M ELKK+AE ADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD TQQDYV
Sbjct: 396 VEDDFHKMSELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYV 455

Query: 299 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 358
           RTAQASGKALVSLINEVLDQAK+ESGKLELE V F+LR + DD+LSLF GK+Q+KG+ELA
Sbjct: 456 RTAQASGKALVSLINEVLDQAKIESGKLELETVPFDLRTVCDDILSLFCGKAQEKGLELA 515

Query: 359 VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 418
           VY+SD+VP+ LIGDPGR RQIITNL+GNSIKFTE+GHI++TV++VEEV+  +EVET + +
Sbjct: 516 VYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERGHIYLTVHVVEEVMSCLEVETGIQN 575

Query: 419 SKNTLSGYPVADRCHSWKGFKTFNQD--GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476
           + NTLSGYPVA+R  SW+  + FN++   S   F   ++D I+L++SVEDTG GIP EAQ
Sbjct: 576 T-NTLSGYPVANRRCSWESIRLFNRELHSSEKSFAPIASDSISLVISVEDTGVGIPFEAQ 634

Query: 477 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536
           SR+FTPFMQVGPSI+R HGGTGIGLSISK LVG MKGEIGF S P++GSTFTFTAV    
Sbjct: 635 SRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRA 694

Query: 537 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
               N+             SSEF+G+ ALVVD RP+RAKV++YH+QRLG++ E+ ++  Q
Sbjct: 695 HCKGNDIK-----------SSEFKGINALVVDHRPVRAKVTKYHLQRLGVKTELTAELNQ 743

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
            +S++ SGS    ++L+++E W K++  + L VN LR        KLFLL +S SS +  
Sbjct: 744 FISKLNSGSLTAKLVLIDKETWLKESHCTPLLVNKLRNNDKPDSPKLFLLGSSASSPKGG 803

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
           + T      +VIMKPLR+SML  SL+RA+G  +K + RN  + + +L  LL  ++I++VD
Sbjct: 804 SDTSREHNLNVIMKPLRASMLQVSLRRALGGVDKVHCRNGVVGNSTLGSLLHKKQIIVVD 863

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
           DN VNLKVAA  LK+YGA V C + GKKA  LL PPH FDACFMDIQMPEMDGFEAT+ I
Sbjct: 864 DNIVNLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRI 923

Query: 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
           R ME + N RI RGE   E   ++  +  PILAMTADVIQAT+EECL+S MDGYVSKPFE
Sbjct: 924 RVMERDLNERIERGEAPPEC-ASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFE 982

Query: 837 AEQLYREVSRFF 848
            EQLY EV+RFF
Sbjct: 983 GEQLYSEVARFF 994


>gi|125528916|gb|EAY77030.1| hypothetical protein OsI_04985 [Oryza sativa Indica Group]
          Length = 1023

 Score = 1060 bits (2742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/852 (62%), Positives = 649/852 (76%), Gaps = 28/852 (3%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIE----------EEYAPVIFAQD 58
            +RV   ERE+FE+QQGW IK+M +  +       P P +          EEYAPVIFAQD
Sbjct: 181  VRVTHGEREQFERQQGWAIKKMYSSSNKKQSSPGPGPGDAAVAEIREPAEEYAPVIFAQD 240

Query: 59   TVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNA 118
               HVIS DMLSG EDR+N+LRAR SGKGVLTAPF+LL  NRLGVILT+ VYK ELP+ A
Sbjct: 241  AYKHVISFDMLSGNEDRDNILRARKSGKGVLTAPFKLL-NNRLGVILTYTVYKYELPAYA 299

Query: 119  TPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDD 178
             P+ERI+A  GYLGGIFDI++LVEKLL QLAS+++I VNVYD TN S PISMYG + +  
Sbjct: 300  RPHERIQAAIGYLGGIFDIQALVEKLLKQLASQESIMVNVYDTTNES-PISMYGDD-TGS 357

Query: 179  GLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAK 238
            G+  VS LNFGDP RKHEM CRF++K PWP LAI++S G LVIA L GHIFQATV+RIAK
Sbjct: 358  GMCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAITSSFGTLVIALLTGHIFQATVHRIAK 417

Query: 239  VEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 298
            VE+D+H M ELKK+AE ADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD TQQDYV
Sbjct: 418  VEDDFHKMSELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYV 477

Query: 299  RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 358
            RTAQASGKALVSLINEVLDQAK+ESGKLELE V F+LR + DD+LSLF GK+Q+KG+ELA
Sbjct: 478  RTAQASGKALVSLINEVLDQAKIESGKLELETVPFDLRTVCDDILSLFCGKAQEKGLELA 537

Query: 359  VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 418
            VY+SD+VP+ LIGDPGR RQIITNL+GNSIKFTE+GHI++TV++VEEV+  +EVET + +
Sbjct: 538  VYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERGHIYLTVHVVEEVMSCLEVETGIQN 597

Query: 419  SKNTLSGYPVADRCHSWKGFKTFNQD--GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476
            + NTLSGYPVA+R  SW+  + FN++   S   F   ++D I+L++SVEDTG GIP EAQ
Sbjct: 598  T-NTLSGYPVANRRRSWESIRLFNRELHSSEKSFAPIASDSISLVISVEDTGVGIPFEAQ 656

Query: 477  SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536
            SR+FTPFMQVGPSI+R HGGTGIGLSISK LVG MKGEIGF S P++GSTFTFTAV    
Sbjct: 657  SRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRA 716

Query: 537  SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
                N+             SSEF+G+ ALVVD RP+RAKV++YH+QRLG++ E+ ++  Q
Sbjct: 717  HCKGNDIK-----------SSEFKGINALVVDHRPVRAKVTKYHLQRLGVKTELTAELNQ 765

Query: 597  CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
             +S++ SGS    ++L+++E W K++  + L VN LR        KLFLL +S SS +  
Sbjct: 766  FISKLNSGSLTAKLVLIDKETWLKESHCTPLLVNKLRNNDKPDSPKLFLLGSSASSPKGG 825

Query: 657  TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
            + T      +VIMKPLR+SML  SL+RA+G  +K + RN  + + +L  LL  ++I++VD
Sbjct: 826  SDTSREHNLNVIMKPLRASMLQVSLRRALGGVDKVHCRNGVVGNSTLGSLLHKKQIIVVD 885

Query: 717  DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
            DN VNLKVAA  LK+YGA V C + GKKA  LL PPH FDACFMDIQMPEMDGFEAT+ I
Sbjct: 886  DNIVNLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRI 945

Query: 777  REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
            R ME + N RI RGE   E   ++  +  PILAMTADVIQAT+EECL+S MDGYVSKPFE
Sbjct: 946  RVMERDLNERIERGEAPPEC-ASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFE 1004

Query: 837  AEQLYREVSRFF 848
             EQLY EV+RFF
Sbjct: 1005 GEQLYSEVARFF 1016


>gi|118790678|tpd|FAA00248.1| TPA: histidine kinase [Oryza sativa Japonica Group]
          Length = 1023

 Score = 1059 bits (2738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/852 (62%), Positives = 649/852 (76%), Gaps = 28/852 (3%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIE----------EEYAPVIFAQD 58
            +RV   ERE+FE+QQGW IK+M +  +       P P +          EEYAPVIFAQD
Sbjct: 181  VRVTHGEREQFERQQGWAIKKMYSSSNKKQSSPGPGPGDAAVAEIREPAEEYAPVIFAQD 240

Query: 59   TVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNA 118
               HVIS DMLSG EDR+N+LRAR SGKGVLTAPF+LL  NRLGVILT+ VYK ELP+ A
Sbjct: 241  AYKHVISFDMLSGNEDRDNILRARKSGKGVLTAPFKLL-NNRLGVILTYTVYKYELPAYA 299

Query: 119  TPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDD 178
             P+ERI+A  GYLGGIFDI++LVEKLL QLAS+++I VNVYD TN S PISMYG + +  
Sbjct: 300  RPHERIQAAIGYLGGIFDIQALVEKLLKQLASQESIMVNVYDTTNES-PISMYGDD-TGS 357

Query: 179  GLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAK 238
            G+  VS LNFGDP RKHEM CRF++K PWP LAI++S G LVIA L GHIFQATV+RIAK
Sbjct: 358  GMCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAITSSFGTLVIALLTGHIFQATVHRIAK 417

Query: 239  VEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 298
            VE+D+H M ELKK+AE ADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD TQQDYV
Sbjct: 418  VEDDFHKMSELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYV 477

Query: 299  RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 358
            RTAQASGKALVSLINEVLDQAK+ESGKLELE V F+LR + DD+LSLF GK+Q+KG+ELA
Sbjct: 478  RTAQASGKALVSLINEVLDQAKIESGKLELETVPFDLRTVCDDILSLFCGKAQEKGLELA 537

Query: 359  VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 418
            VY+SD+VP+ LIGDPGR RQIITNL+GNSIKFTE+GHI++TV++VEEV+  +EVET + +
Sbjct: 538  VYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERGHIYLTVHVVEEVMSCLEVETGIQN 597

Query: 419  SKNTLSGYPVADRCHSWKGFKTFNQD--GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476
            + NTLSGYPVA+R  SW+  + FN++   S   F   ++D I+L++SVEDTG GIP EAQ
Sbjct: 598  T-NTLSGYPVANRRCSWESIRLFNRELHSSEKSFAPIASDSISLVISVEDTGVGIPFEAQ 656

Query: 477  SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536
            SR+FTPFMQVGPSI+R HGGTGIGLSISK LVG MKGEIGF S P++GSTFTFTAV    
Sbjct: 657  SRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRA 716

Query: 537  SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
                N+             SSEF+G+ ALVVD RP+RAKV++YH+QRLG++ E+ ++  Q
Sbjct: 717  HCKGNDIK-----------SSEFKGINALVVDHRPVRAKVTKYHLQRLGVKTELTAELNQ 765

Query: 597  CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
             +S++ SGS    ++L+++E W K++  + L VN LR        KLFLL +S SS +  
Sbjct: 766  FISKLNSGSLTAKLVLIDKETWLKESHCTPLLVNKLRNNDKPDSPKLFLLGSSASSPKGG 825

Query: 657  TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
            + T      +VIMKPLR+SML  SL+RA+G  +K + RN  + + +L  LL  ++I++VD
Sbjct: 826  SDTSREHNLNVIMKPLRASMLQVSLRRALGGVDKVHCRNGVVGNSTLGSLLHKKQIIVVD 885

Query: 717  DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
            DN VNLKVAA  LK+YGA V C + GKKA  LL PPH FDACFMDIQMPEMDGFEAT+ I
Sbjct: 886  DNIVNLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRI 945

Query: 777  REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
            R ME + N RI RGE   E   ++  +  PILAMTADVIQAT+EECL+S MDGYVSKPFE
Sbjct: 946  RVMERDLNERIERGEAPPEC-ASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFE 1004

Query: 837  AEQLYREVSRFF 848
             EQLY EV+RFF
Sbjct: 1005 GEQLYSEVARFF 1016


>gi|57900198|dbj|BAD88305.1| putative histidine kinase 2 [Oryza sativa Japonica Group]
 gi|57900221|dbj|BAD88327.1| putative histidine kinase 2 [Oryza sativa Japonica Group]
          Length = 866

 Score = 1059 bits (2738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/852 (62%), Positives = 649/852 (76%), Gaps = 28/852 (3%)

Query: 9   IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIE----------EEYAPVIFAQD 58
           +RV   ERE+FE+QQGW IK+M +  +       P P +          EEYAPVIFAQD
Sbjct: 24  VRVTHGEREQFERQQGWAIKKMYSSSNKKQSSPGPGPGDAAVAEIREPAEEYAPVIFAQD 83

Query: 59  TVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNA 118
              HVIS DMLSG EDR+N+LRAR SGKGVLTAPF+LL  NRLGVILT+ VYK ELP+ A
Sbjct: 84  AYKHVISFDMLSGNEDRDNILRARKSGKGVLTAPFKLL-NNRLGVILTYTVYKYELPAYA 142

Query: 119 TPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDD 178
            P+ERI+A  GYLGGIFDI++LVEKLL QLAS+++I VNVYD TN S PISMYG + +  
Sbjct: 143 RPHERIQAAIGYLGGIFDIQALVEKLLKQLASQESIMVNVYDTTNES-PISMYGDD-TGS 200

Query: 179 GLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAK 238
           G+  VS LNFGDP RKHEM CRF++K PWP LAI++S G LVIA L GHIFQATV+RIAK
Sbjct: 201 GMCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAITSSFGTLVIALLTGHIFQATVHRIAK 260

Query: 239 VEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 298
           VE+D+H M ELKK+AE ADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD TQQDYV
Sbjct: 261 VEDDFHKMSELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYV 320

Query: 299 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 358
           RTAQASGKALVSLINEVLDQAK+ESGKLELE V F+LR + DD+LSLF GK+Q+KG+ELA
Sbjct: 321 RTAQASGKALVSLINEVLDQAKIESGKLELETVPFDLRTVCDDILSLFCGKAQEKGLELA 380

Query: 359 VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 418
           VY+SD+VP+ LIGDPGR RQIITNL+GNSIKFTE+GHI++TV++VEEV+  +EVET + +
Sbjct: 381 VYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERGHIYLTVHVVEEVMSCLEVETGIQN 440

Query: 419 SKNTLSGYPVADRCHSWKGFKTFNQD--GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476
           + NTLSGYPVA+R  SW+  + FN++   S   F   ++D I+L++SVEDTG GIP EAQ
Sbjct: 441 T-NTLSGYPVANRRCSWESIRLFNRELHSSEKSFAPIASDSISLVISVEDTGVGIPFEAQ 499

Query: 477 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536
           SR+FTPFMQVGPSI+R HGGTGIGLSISK LVG MKGEIGF S P++GSTFTFTAV    
Sbjct: 500 SRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRA 559

Query: 537 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
               N+             SSEF+G+ ALVVD RP+RAKV++YH+QRLG++ E+ ++  Q
Sbjct: 560 HCKGNDIK-----------SSEFKGINALVVDHRPVRAKVTKYHLQRLGVKTELTAELNQ 608

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
            +S++ SGS    ++L+++E W K++  + L VN LR        KLFLL +S SS +  
Sbjct: 609 FISKLNSGSLTAKLVLIDKETWLKESHCTPLLVNKLRNNDKPDSPKLFLLGSSASSPKGG 668

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
           + T      +VIMKPLR+SML  SL+RA+G  +K + RN  + + +L  LL  ++I++VD
Sbjct: 669 SDTSREHNLNVIMKPLRASMLQVSLRRALGGVDKVHCRNGVVGNSTLGSLLHKKQIIVVD 728

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
           DN VNLKVAA  LK+YGA V C + GKKA  LL PPH FDACFMDIQMPEMDGFEAT+ I
Sbjct: 729 DNIVNLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRI 788

Query: 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
           R ME + N RI RGE   E   ++  +  PILAMTADVIQAT+EECL+S MDGYVSKPFE
Sbjct: 789 RVMERDLNERIERGEAPPEC-ASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFE 847

Query: 837 AEQLYREVSRFF 848
            EQLY EV+RFF
Sbjct: 848 GEQLYSEVARFF 859


>gi|82466315|gb|ABB76249.1| hybrid type histidine kinase isoform a [Oryza sativa Indica Group]
          Length = 1023

 Score = 1058 bits (2736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/852 (62%), Positives = 649/852 (76%), Gaps = 28/852 (3%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIE----------EEYAPVIFAQD 58
            +RV   E+E+FE+QQGW IK+M +  +       P P +          EEYAPVIFAQD
Sbjct: 181  VRVTHGEQEQFERQQGWAIKKMYSSSNKKQSSPGPGPGDAAVAEIREPAEEYAPVIFAQD 240

Query: 59   TVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNA 118
               HVIS DMLSG EDR+N+LRAR SGKGVLTAPF+LL  NRLGVILT+ VYK ELP+ A
Sbjct: 241  AYKHVISFDMLSGNEDRDNILRARKSGKGVLTAPFKLL-NNRLGVILTYTVYKYELPAYA 299

Query: 119  TPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDD 178
             P+ERI+A  GYLGGIFDI++LVEKLL QLAS+++I VNVYD TN S PISMYG + +  
Sbjct: 300  RPHERIQAAIGYLGGIFDIQALVEKLLKQLASQESIMVNVYDTTNES-PISMYGDD-TGS 357

Query: 179  GLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAK 238
            G+  VS LNFGDP RKHEM CRF++K PWP LAI++S G LVIA L GHIFQATV+RIAK
Sbjct: 358  GMCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAITSSFGTLVIALLTGHIFQATVHRIAK 417

Query: 239  VEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 298
            VE+D+H M ELKK+AE ADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD TQQDYV
Sbjct: 418  VEDDFHKMSELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYV 477

Query: 299  RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 358
            RTAQASGKALVSLINEVLDQAK+ESGKLELE V F+LR + DD+LSLF GK+Q+KG+ELA
Sbjct: 478  RTAQASGKALVSLINEVLDQAKIESGKLELETVPFDLRTVCDDILSLFCGKAQEKGLELA 537

Query: 359  VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 418
            VY+SD+VP+ LIGDPGR RQIITNL+GNSIKFTE+GHI++TV++VEEV+  +EVET + +
Sbjct: 538  VYVSDQVPQILIGDPGRVRQIITNLIGNSIKFTERGHIYLTVHVVEEVMSCLEVETGIQN 597

Query: 419  SKNTLSGYPVADRCHSWKGFKTFNQD--GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476
            + NTLSGYPVA+R  SW+  + FN++   S   F   ++D I+L++SVEDTG GIP EAQ
Sbjct: 598  T-NTLSGYPVANRRRSWESIRLFNRELHSSEKSFAPIASDSISLVISVEDTGVGIPFEAQ 656

Query: 477  SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536
            SR+FTPFMQVGPSI+R HGGTGIGLSISK LVG MKGEIGF S P++GSTFTFTAV    
Sbjct: 657  SRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRA 716

Query: 537  SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
                N+             SSEF+G+ ALVVD RP+RAKV++YH+QRLG++ E+ ++  Q
Sbjct: 717  HCKGNDIK-----------SSEFKGINALVVDHRPVRAKVTKYHLQRLGVKTELTAELNQ 765

Query: 597  CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
             +S++ SGS    ++L+++E W K++  + L VN LR        KLFLL +S SS +  
Sbjct: 766  FISKLNSGSLTAKLVLIDKETWLKESHCTPLLVNKLRNNDKPDSPKLFLLGSSASSPKGG 825

Query: 657  TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
            + T      +VIMKPLR+SML  SL+RA+G  +K + RN  + + +L  LL  ++I++VD
Sbjct: 826  SDTSREHNLNVIMKPLRASMLQVSLRRALGGVDKVHCRNGVVGNSTLGSLLHKKQIIVVD 885

Query: 717  DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
            DN VNLKVAA  LK+YGA V C + GKKA  LL PPH FDACFMDIQMPEMDGFEAT+ I
Sbjct: 886  DNIVNLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRI 945

Query: 777  REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
            R ME + N RI RGE   E   ++  +  PILAMTADVIQAT+EECL+S MDGYVSKPFE
Sbjct: 946  RVMERDLNERIERGEAPPEC-ASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFE 1004

Query: 837  AEQLYREVSRFF 848
             EQLY EV+RFF
Sbjct: 1005 GEQLYSEVARFF 1016


>gi|162461092|ref|NP_001104866.1| histidine kinase2 [Zea mays]
 gi|38347686|dbj|BAD01584.1| histidine kinase 2 [Zea mays]
          Length = 1007

 Score = 1054 bits (2725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/849 (62%), Positives = 650/849 (76%), Gaps = 24/849 (2%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFE-----HNPVHKDEPSPIE--EEYAPVIFAQDTVS 61
            +RV  +ERE+FE+QQGW+IK+M + +       P + ++    E  EEYAPVIFAQD   
Sbjct: 167  VRVTHAEREQFERQQGWSIKKMYSSKTKNQSQGPGNAEDAEVREPAEEYAPVIFAQDAYK 226

Query: 62   HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
            HVIS D+LSG +DR+NVLRAR SGKGVLTAPF+LL  NRLGVI T+AVYK ELP+NA P 
Sbjct: 227  HVISFDLLSGADDRDNVLRARESGKGVLTAPFKLL-NNRLGVIFTYAVYKYELPANARPQ 285

Query: 122  ERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLW 181
            ERI+A  GYLGGIFDIE+LV+KLLHQLA KQ+I VNVYD TN   PISMYGSN +  G+ 
Sbjct: 286  ERIQAAIGYLGGIFDIEALVDKLLHQLAGKQSIMVNVYDTTN-ERPISMYGSNDTGSGMC 344

Query: 182  LVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
             VSTLNFGDP RKH M CRF Q  PWP +AI+TSIG LVIA L+G+I  AT  RIA+VE+
Sbjct: 345  QVSTLNFGDPSRKHVMHCRFIQSPPWPWMAITTSIGTLVIALLIGYIVHATAKRIARVED 404

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            D+  M  LKK+AE AD+AKSQFLATVSHEIRTPMNGVLGML MLMDT+LD TQQDYVRTA
Sbjct: 405  DFQEMSLLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTA 464

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
            QASGK LVSLINEVLDQAK+ESGKLELE V F+LR + DD+LSLF GK+Q+KG+ELAV++
Sbjct: 465  QASGKTLVSLINEVLDQAKIESGKLELEVVPFDLRTVCDDILSLFCGKAQEKGLELAVFV 524

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
            SD+VP+TLIGDPGR RQIITNL+GNSIKFTEKGHI++TV++VEE++  +EVET +  + N
Sbjct: 525  SDQVPQTLIGDPGRIRQIITNLVGNSIKFTEKGHIYLTVHVVEEIMHCLEVETGIQYT-N 583

Query: 422  TLSGYPVADRCHSWKGFKTFNQDGSTS--PFKSSSADLINLIVSVEDTGQGIPLEAQSRI 479
            TLSGYPVA+R  SW+ F+ F+++ ++S  PF   ++D I+L++SVEDTG GIP +AQSR+
Sbjct: 584  TLSGYPVANRKRSWENFRLFSRELNSSEMPFAPIASDSISLMISVEDTGAGIPFDAQSRV 643

Query: 480  FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSST 539
            FTPFMQVGPSI+R HGGTGIGLSISK LVG MKGEIGF S P +GSTFTFTAV     S+
Sbjct: 644  FTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPQVGSTFTFTAVLTRVHSS 703

Query: 540  SNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS 599
             NE+            SSEF+ + ALVVD RP+RAKV++YH+QRLG+Q E+ +D  Q +S
Sbjct: 704  RNENK-----------SSEFKEINALVVDHRPVRAKVTKYHLQRLGVQTELTTDLDQYIS 752

Query: 600  QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTST 659
            +   GS+I  ++L+++E W K++    L V  LR       +KLFLL N  SS ++N+  
Sbjct: 753  KNNCGSQIAKLVLIDKETWLKESHSMPLLVTKLRNKDQPDSTKLFLLENPKSSVKSNSHI 812

Query: 660  DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 719
                  +VIMKPLR+SML  SLQRA+G  +K + RN  + + +L  LL  ++I++VDDN 
Sbjct: 813  FREYNLNVIMKPLRASMLQVSLQRALGGIDKLHCRNGVVGNSTLGSLLHKKRIIVVDDNI 872

Query: 720  VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
            VNLKVAA  LK+YGA V C + GK+A  LL PPH FDACFMDIQMPEMDGFEATK IR M
Sbjct: 873  VNLKVAAGALKKYGAEVTCADSGKEAITLLKPPHNFDACFMDIQMPEMDGFEATKRIRVM 932

Query: 780  EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
            E + N +I RGE   E    V  +  PILAMTADVIQAT+E+CL+S MDGYVSKPFE EQ
Sbjct: 933  ERDLNEQIERGEAPPECV-GVRQWRTPILAMTADVIQATHEQCLKSEMDGYVSKPFEGEQ 991

Query: 840  LYREVSRFF 848
            LYREV+RFF
Sbjct: 992  LYREVARFF 1000


>gi|414878942|tpg|DAA56073.1| TPA: putative histidine kinase family protein [Zea mays]
          Length = 1007

 Score = 1052 bits (2720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/849 (62%), Positives = 649/849 (76%), Gaps = 24/849 (2%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFE-----HNPVHKDEPSPIE--EEYAPVIFAQDTVS 61
            +RV  +ERE+FE+QQGW+IK+M + +       P + ++    E  EEYAPVIFAQD   
Sbjct: 167  VRVTHAEREQFERQQGWSIKKMYSSKTKNQSQGPGNAEDAEVREPAEEYAPVIFAQDAYK 226

Query: 62   HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPN 121
            HVIS D+LSG +DR+NVLRAR SGKGVLTAPF+LL  NRLGVI T+AVYK ELP+NA P 
Sbjct: 227  HVISFDLLSGADDRDNVLRARESGKGVLTAPFKLL-NNRLGVIFTYAVYKYELPANARPQ 285

Query: 122  ERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLW 181
            ERI+A  GYLGGIFDIE+LV+KLLHQLA KQ+I VNVYD TN   PISMYGSN +  G+ 
Sbjct: 286  ERIQAAIGYLGGIFDIEALVDKLLHQLAGKQSIMVNVYDTTN-ERPISMYGSNDTGSGMC 344

Query: 182  LVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
             VSTLNFGDP RKH M CRF Q  PWP +AI+TSIG LVIA L+G+I  AT  RIA+VE+
Sbjct: 345  QVSTLNFGDPSRKHVMHCRFIQSPPWPWMAITTSIGTLVIALLIGYIVHATAKRIARVED 404

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            D+  M  LKK+AE AD+AKSQFLATVSHEIRTPMNGVLGML MLMDT+LD TQQDYVRTA
Sbjct: 405  DFQEMSLLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTA 464

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
            QASGK LVSLINEVLDQAK+ESGKLELE V F+LR + DD+LSLF GK+Q+KG+ELAV++
Sbjct: 465  QASGKTLVSLINEVLDQAKIESGKLELEVVPFDLRTVCDDILSLFCGKAQEKGLELAVFV 524

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
            SD+VP+TLIGDPGR RQIITNL+GNSIKFTEKGHI++TV++VEE++  +EVET  +   N
Sbjct: 525  SDQVPQTLIGDPGRIRQIITNLVGNSIKFTEKGHIYLTVHVVEEIMHCLEVETG-TQYTN 583

Query: 422  TLSGYPVADRCHSWKGFKTFNQDGSTS--PFKSSSADLINLIVSVEDTGQGIPLEAQSRI 479
            TLSGYPVA+R  SW+ F+ F+++ ++S  PF   ++D I+L++SVEDTG GIP +AQSR+
Sbjct: 584  TLSGYPVANRKRSWENFRLFSRELNSSEMPFAPIASDSISLMISVEDTGAGIPFDAQSRV 643

Query: 480  FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSST 539
            FTPFMQVGPSI+R HGGTGIGLSISK LVG MKGEIGF S P +GSTFTFTAV     S+
Sbjct: 644  FTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFSSKPQVGSTFTFTAVLTRVHSS 703

Query: 540  SNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS 599
             NE+            SSEF+ + ALVVD RP+RAKV++YH+QRLG+Q E+ +D  Q +S
Sbjct: 704  RNENK-----------SSEFKEINALVVDHRPVRAKVTKYHLQRLGVQTELTTDLDQYIS 752

Query: 600  QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTST 659
            +   GS+I  ++L+++E W K++    L V  LR       +KLFLL N  SS ++N+  
Sbjct: 753  KNNCGSQIAKLVLIDKETWLKESHSMPLLVTKLRNKDQPDSTKLFLLENPKSSVKSNSHI 812

Query: 660  DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 719
                  +VIMKPLR+SML  SLQRA+G  +K + RN  + + +L  LL  ++I++VDDN 
Sbjct: 813  FREYNLNVIMKPLRASMLQVSLQRALGGIDKLHCRNGVVGNSTLGSLLHKKRIIVVDDNI 872

Query: 720  VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
            VNLKVAA  LK+YGA V C + GK+A  LL PPH FDACFMDIQMPEMDGFEATK IR M
Sbjct: 873  VNLKVAAGALKKYGAEVTCADSGKEAITLLKPPHNFDACFMDIQMPEMDGFEATKRIRVM 932

Query: 780  EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
            E + N +I RGE   E    V  +  PILAMTADVIQAT+E+CL+S MDGYVSKPFE EQ
Sbjct: 933  ERDLNEQIERGEAPPECV-GVRQWRTPILAMTADVIQATHEQCLKSEMDGYVSKPFEGEQ 991

Query: 840  LYREVSRFF 848
            LYREV+RFF
Sbjct: 992  LYREVARFF 1000


>gi|198387188|gb|ACH87040.1| hybrid type histidine kinase isoform b [Oryza sativa Indica Group]
          Length = 865

 Score = 1050 bits (2714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/852 (62%), Positives = 648/852 (76%), Gaps = 29/852 (3%)

Query: 9   IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIE----------EEYAPVIFAQD 58
           +RV   ERE FE+QQGWTIK+M +  +       P P +          EEYAPVIFAQD
Sbjct: 24  VRVTHGEREHFERQQGWTIKKMYSSSNKKQSSSGPGPGDAAVAEIREPAEEYAPVIFAQD 83

Query: 59  TVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNA 118
              HVIS DMLSG EDR+N+L +R SGKGVLTAPF+LL  NRLGVI T+ VYK ELP+NA
Sbjct: 84  AYKHVISFDMLSGNEDRKNILYSRKSGKGVLTAPFKLL-NNRLGVISTYTVYKSELPANA 142

Query: 119 TPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDD 178
            P+ERI+A  GYLGGIFDI++LVEKLL QLAS+++I VNVYD TN  +PISMYG + +  
Sbjct: 143 RPHERIQAAIGYLGGIFDIQALVEKLLKQLASQESIMVNVYDTTN-ENPISMYGDD-TGS 200

Query: 179 GLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAK 238
           G+  VS LNFGDP RKHEM CRF++K PWP LAI++S G LVIA L GHIFQATV+RIAK
Sbjct: 201 GMCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAITSSFGTLVIALLTGHIFQATVHRIAK 260

Query: 239 VEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 298
           VE+D+H M ELKK+AE ADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD TQQDYV
Sbjct: 261 VEDDFHKMSELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYV 320

Query: 299 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 358
           RTAQASGKALVSLINEVLDQAK+ESGKLELE V F+LR + DD+LSLF GK+Q+KG+ELA
Sbjct: 321 RTAQASGKALVSLINEVLDQAKIESGKLELETVPFDLRTVCDDILSLFCGKAQEKGLELA 380

Query: 359 VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 418
           VY+SD+VP+ LIGDPGR RQIITNL+GNSIKFTE+GHI++TV++VEEV+  +EVET + +
Sbjct: 381 VYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERGHIYLTVHVVEEVMSCLEVETGIQN 440

Query: 419 SKNTLSGYPVADRCHSWKGFKTFNQD--GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476
           + NTLSGYPVA+R  SW+  + FN++   S   F   ++D I+L++SVEDTG GIP EAQ
Sbjct: 441 T-NTLSGYPVANRRCSWESIRLFNRELHSSEKSFAPIASDSISLVISVEDTGVGIPFEAQ 499

Query: 477 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536
           SR+FTPFMQVGPSI+R HGGTGIGLSISK LVG MKGEIGF S P++GSTFTFTAV    
Sbjct: 500 SRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRA 559

Query: 537 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
               N+             SSEF+G+ ALVVD RP+RAKV++YH+QRLG++ E+ ++  Q
Sbjct: 560 HCKGNDIK-----------SSEFKGINALVVDHRPVRAKVTKYHLQRLGVKTELTAELNQ 608

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
            +S++ SGS    ++L+++E W K++  + L VN LR        KLFLL +S SS +  
Sbjct: 609 FISKLNSGSLTAKLVLIDKETWLKESHCTPLLVNKLRNNDKPDSPKLFLLGSSASSPKGG 668

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
           + T      +VIMKPLR+SML  SL+RA+G  +K + RN  + + +L  LL  ++I++VD
Sbjct: 669 SDTSREHNLNVIMKPLRASMLQVSLRRALGGVDKVHCRNGVVGNSTLGSLLHKKQIIVVD 728

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
           DN VNLKVA A LK+YGA V C + GKKA  LL PPH FDACFMDIQMPEMDGFEAT+ I
Sbjct: 729 DNIVNLKVAGA-LKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRI 787

Query: 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
           R ME + N RI RGE   E   ++  +  PILAMTADVIQAT+EECL+S MDGYVSKPFE
Sbjct: 788 RVMERDLNERIERGEAPPEC-ASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFE 846

Query: 837 AEQLYREVSRFF 848
            EQLY EV+RFF
Sbjct: 847 GEQLYSEVARFF 858


>gi|326487932|dbj|BAJ89805.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1019

 Score = 1024 bits (2648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/846 (61%), Positives = 639/846 (75%), Gaps = 19/846 (2%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD----EPSPIEEEYAPVIFAQDTVSHVI 64
            +RV  +ER++FE+QQGW+IK+M +   +    D    E     +EYAPVIFAQD   +VI
Sbjct: 180  VRVTHAERDQFERQQGWSIKKMYSSPSSQGPGDAAVAEIRGPADEYAPVIFAQDAYKNVI 239

Query: 65   SLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERI 124
            S DMLSG +DREN++RAR SGKGVLTAPF+LL   RLGVILT++VYK E P+NA P ERI
Sbjct: 240  SFDMLSGADDRENIIRARESGKGVLTAPFQLL-NGRLGVILTYSVYKSEPPANARPQERI 298

Query: 125  EATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVS 184
            +A  GYLGGIFDIE+LV+KLLHQLA KQ+I VNVYD T    PISMYGSN +  G++  S
Sbjct: 299  QAAVGYLGGIFDIEALVDKLLHQLAGKQSIMVNVYDTTTKEKPISMYGSNDTGGGMYHNS 358

Query: 185  TLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYH 244
            TLN GDP R+HEM CRF QK P P LAI++S+GI VI  L+G+I  ATV+RIAKVE+D  
Sbjct: 359  TLNSGDPSRRHEMHCRFMQKPPLPWLAITSSLGIYVIFLLIGYIIYATVHRIAKVEDDLQ 418

Query: 245  GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
             M +LKK+AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD TQQDYVRTAQAS
Sbjct: 419  IMKDLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQAS 478

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
            GKALVSLINEVLDQAK+ESGKLEL+AV  ++R + DD+LSLF GK+Q+KG+ELAVY+SD+
Sbjct: 479  GKALVSLINEVLDQAKIESGKLELDAVPLDVRLVCDDILSLFCGKAQEKGLELAVYVSDQ 538

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            VP+TLIGDP R RQIITNLMGNSIKFTE+GHI++TV++VEEV+ S++VETE+ ++ NTLS
Sbjct: 539  VPQTLIGDPNRMRQIITNLMGNSIKFTERGHIYLTVHVVEEVMCSLDVETEIQNTYNTLS 598

Query: 425  GYPVADRCHSWKGFKTFNQDGSTS--PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 482
            G  VA R  SW+ F+ FN D  +S  PF     + I LI+SVEDTG GIPLEAQSRIFTP
Sbjct: 599  GCEVAKRRLSWQSFRLFNMDLHSSELPFAPIMPETIRLIISVEDTGVGIPLEAQSRIFTP 658

Query: 483  FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNE 542
            FMQVGPSI+RTHGGTGIGLSISK LV  MKGEIGFVS  ++GSTF+FTAV       +N 
Sbjct: 659  FMQVGPSIARTHGGTGIGLSISKCLVHLMKGEIGFVSKHHVGSTFSFTAVLSRARPNAN- 717

Query: 543  HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA 602
                 +N  P      F+G+ ALVVD RP+RA V++YH+QRLG++ E+ +D  Q + ++ 
Sbjct: 718  -----VNKSPG-----FKGVSALVVDHRPVRANVTKYHLQRLGVKTELTNDVSQVIPKMN 767

Query: 603  SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
              S +  ++LV++E W K++      ++ LR        K+FLL N  +S +++++    
Sbjct: 768  CASLVTRLVLVDKETWLKESHSMPQLLSKLRSKDQSDPPKVFLLENPTNSIKSSSNISRE 827

Query: 663  SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
               +VIMKPLR+SML ASL+R +G  +K +++N  + + +L  LL  RKI++VDDN VNL
Sbjct: 828  HNLNVIMKPLRASMLEASLRRVLGGVDKAHVKNGLVGNSALGSLLHKRKIIVVDDNAVNL 887

Query: 723  KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
            KVAA  LK+YGA V+C + GKKA  LL PPH FDACFMDIQMPEMDGFEATK IR ME  
Sbjct: 888  KVAAGALKKYGAEVICADSGKKAIALLKPPHSFDACFMDIQMPEMDGFEATKRIRMMERE 947

Query: 783  FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
             N R+ RGE   E   NV  +  PILAMTADVIQATYE CL+  MDGYVSKPFE EQLYR
Sbjct: 948  LNERVERGEAPPEC-ANVRRWRTPILAMTADVIQATYEHCLKCEMDGYVSKPFEGEQLYR 1006

Query: 843  EVSRFF 848
            EV+RFF
Sbjct: 1007 EVTRFF 1012


>gi|357126560|ref|XP_003564955.1| PREDICTED: histidine kinase 3-like [Brachypodium distachyon]
          Length = 1019

 Score = 1023 bits (2644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/852 (61%), Positives = 640/852 (75%), Gaps = 30/852 (3%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEH---NPVHKD-------EPSPIEEEYAPVIFAQD 58
            +RV   ER++FE+QQGW+IK+M + +     P   D       EP+   EEYAPVIFAQD
Sbjct: 179  VRVTHGERDQFERQQGWSIKKMYSSKKKSPGPGPGDAATAEIREPA---EEYAPVIFAQD 235

Query: 59   TVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNA 118
               HV+S DMLSG +DREN+LRAR SGKGVLTAPF+LL  NRLGVI T+ VYK E P+ A
Sbjct: 236  AYKHVLSFDMLSGDDDRENILRARESGKGVLTAPFKLL-NNRLGVISTYTVYKSEFPAYA 294

Query: 119  TPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDD 178
             P ERI+A  GYLGGIFDIE+LV+KLLHQLA KQ+I VNVYD TN   PISMYGSN +  
Sbjct: 295  RPQERIQAAIGYLGGIFDIEALVDKLLHQLAGKQSIMVNVYDTTN-EKPISMYGSNDTGG 353

Query: 179  GLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAK 238
            G++  STLNFGDP R+HEM CRF QK P P LAI++S+G LVIA L G+IF ATV+RIAK
Sbjct: 354  GMYHNSTLNFGDPSRRHEMHCRFMQKPPLPWLAITSSLGTLVIALLTGYIFHATVHRIAK 413

Query: 239  VEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 298
            VE+DY  MMELKK+AEAAD+AKSQFLATVSHEIRTPMNGVLGML MLMDT+LD TQQD+V
Sbjct: 414  VEDDYQNMMELKKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDFV 473

Query: 299  RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 358
            RTAQASGKALVSLINEVLDQAK+ESGKLELEAV F+LR + DD+LSLF GK+Q+KG+ELA
Sbjct: 474  RTAQASGKALVSLINEVLDQAKIESGKLELEAVPFDLRIVCDDILSLFCGKAQEKGLELA 533

Query: 359  VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 418
            VY+SD+VP+TLIGDPGR RQIITNLM NSIKFTE+GHI++TV++VEEV+  +EV+T  + 
Sbjct: 534  VYVSDQVPQTLIGDPGRMRQIITNLMSNSIKFTERGHIYLTVHVVEEVMGCLEVKTG-TH 592

Query: 419  SKNTLSGYPVADRCHSWKGFKTFNQDGSTS--PFKSSSADLINLIVSVEDTGQGIPLEAQ 476
              NTLSGYPVA+R  SW+ F+ F+ D  +S  PF   + D I LI+SVEDTG GIP EAQ
Sbjct: 593  YTNTLSGYPVANRRRSWESFRLFDMDLHSSEMPFTPVTPDTIRLIISVEDTGAGIPFEAQ 652

Query: 477  SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536
             RIFTP+MQVGPSI+R HGGTGIGLSISK LV  MKGEIGFVS P++GSTF+FTAV    
Sbjct: 653  YRIFTPYMQVGPSIARIHGGTGIGLSISKCLVHLMKGEIGFVSKPHVGSTFSFTAVLTRA 712

Query: 537  SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
             S  N      +N      SS F+G+ ALVVD RP+RAKV++YH+QRLG+Q E+ +D  Q
Sbjct: 713  QSNGN------LNK-----SSGFKGINALVVDHRPVRAKVAKYHLQRLGVQTELTTDVNQ 761

Query: 597  CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
             + ++  G     ++LV++E W K++      V+ LR        K FLL N  SS +++
Sbjct: 762  IIPKLNCGPLAAKLVLVDKETWLKESHSMPHLVSKLRNKDQADPPKFFLLENPTSSIKSS 821

Query: 657  TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
            +        +VI KPLR+SML  SL++A+G  +K + +N  + + +L  LL  ++I++VD
Sbjct: 822  SHISSEHNLNVIKKPLRASMLQVSLRQALGGVDKVHCKNGVVGNSTLGSLLHKKQIIVVD 881

Query: 717  DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
            DN VNLKVAA  LK+YGA V C + GKKA   L PPH FDACFMDIQMPEMDGF+ATK I
Sbjct: 882  DNAVNLKVAAGALKKYGAVVTCADSGKKAIAYLSPPHIFDACFMDIQMPEMDGFQATKEI 941

Query: 777  REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
            R+ME   N +I  G+V  E   NV  +  PILAMTADVIQATYEECL+  MDGYVSKPFE
Sbjct: 942  RKMESKLNEKIESGDVPPECV-NVRRWRTPILAMTADVIQATYEECLKCEMDGYVSKPFE 1000

Query: 837  AEQLYREVSRFF 848
             EQLYREV+RFF
Sbjct: 1001 GEQLYREVTRFF 1012


>gi|147789780|emb|CAN76309.1| hypothetical protein VITISV_028333 [Vitis vinifera]
          Length = 1400

 Score =  996 bits (2575), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/868 (59%), Positives = 636/868 (73%), Gaps = 39/868 (4%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-----EPSPIEEEYAPVIFAQDTVSHV 63
            ++VL SERE FE + GWTIK+M+T +   V        +PSPI++EYAPVIF+Q+TVSH+
Sbjct: 452  LKVLHSEREHFENEHGWTIKKMETEDQTLVQDCILENLDPSPIQDEYAPVIFSQETVSHI 511

Query: 64   ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
            +S+DM+SGKEDREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY  +LP +ATP +R
Sbjct: 512  VSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNADLPPDATPEQR 571

Query: 124  IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV 183
            IEAT GYLG  +D+ SLV+KLLHQLASKQTI VNVYD TN S PI+MYG+NV+D GL  +
Sbjct: 572  IEATVGYLGASYDVPSLVKKLLHQLASKQTIVVNVYDTTNASAPINMYGTNVTDTGLLRI 631

Query: 184  STLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDY 243
            S L+FGDP RKHEM CRFKQK P P  AI+ S+G+LVI  LVGHIF A +NRIAKVE DY
Sbjct: 632  SNLDFGDPARKHEMHCRFKQKPPPPWTAITASVGVLVITLLVGHIFHAAINRIAKVEGDY 691

Query: 244  HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
              MMELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMD+ LD  QQDY  TA A
Sbjct: 692  RQMMELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDSGLDANQQDYAETAHA 751

Query: 304  SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 363
            SGK L+SLINEVLDQAK+ESG+LELEAV F+LRA LD+VLSLFSGKS +KG+ELAVYISD
Sbjct: 752  SGKDLISLINEVLDQAKIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISD 811

Query: 364  RVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL------ 416
            +VPE +IGDPGRFRQIITNL+GNSIKFT +KGHIFV+V+L +EVV   ++  E+      
Sbjct: 812  QVPEFVIGDPGRFRQIITNLVGNSIKFTHDKGHIFVSVHLADEVVGPPDLRDEVLRQSLN 871

Query: 417  ------SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
                  ++S NTLSG+PV +R  SW+ FK       T   + +S  +I L+V+VEDTG G
Sbjct: 872  IVHDSSNNSYNTLSGFPVVNRWKSWEKFKKLX---CTDSMEETS--IIKLLVTVEDTGVG 926

Query: 471  IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
            IP EAQSRIF PFMQ   S SRT+GGTGIGLSISK LV  M GEIGF S P  GSTF+FT
Sbjct: 927  IPSEAQSRIFMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFESEPGTGSTFSFT 986

Query: 531  AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 590
              F  G ++    +++Q  + P    SEFQG++ALVVD R IRA+V+RYH+QRLGI V+ 
Sbjct: 987  VAFTKGETSL--LDTKQQPHDP--AGSEFQGLRALVVDCRSIRAEVTRYHLQRLGISVDK 1042

Query: 591  VSDQLQCLSQIA-----SGSKIINMILVEQEVWEKDTS-VSTLFVNNLRKLGC----GFQ 640
                +   S ++     S S  + M+LV++EVW+K+   V    +  LR  G       +
Sbjct: 1043 TFSLISACSYLSNNSDPSASTSVAMVLVDKEVWDKEAGLVFHHMLKELRPNGTVEVQEKR 1102

Query: 641  SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 700
             K+FLL  S+SS+  N       + +V+MKPLR S+L +  Q   G+G +      +   
Sbjct: 1103 PKIFLLDTSLSSAERNELKSAGFVDNVLMKPLRLSVLISCFQEVFGIGKRKQANRGK--P 1160

Query: 701  MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
            ++L +LL  ++IL+VDDN VN +VA   LK+YGA V CV+ GK A  +L PPH FDACFM
Sbjct: 1161 LTLGNLLREKRILVVDDNAVNRRVAEFALKKYGAIVTCVDSGKAALLMLKPPHNFDACFM 1220

Query: 761  DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
            D+QMPEMDGF+AT+ IR ME   N RI+ GEVSIE + NV+ +H PILAMTADVIQA  E
Sbjct: 1221 DLQMPEMDGFKATQEIRRMESKVNERIKSGEVSIEMFANVAYWHTPILAMTADVIQANNE 1280

Query: 821  ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            EC++ GMDGYV+KPFE +QLY  V+ FF
Sbjct: 1281 ECMKCGMDGYVAKPFEEDQLYSAVAHFF 1308


>gi|359485817|ref|XP_002269977.2| PREDICTED: histidine kinase 2-like [Vitis vinifera]
          Length = 1272

 Score =  996 bits (2574), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/868 (59%), Positives = 636/868 (73%), Gaps = 39/868 (4%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-----EPSPIEEEYAPVIFAQDTVSHV 63
            ++VL SERE FEK+ GWTIK+M+T +   V        +PSPI++EYAPVIF+Q+TVSH+
Sbjct: 413  LKVLHSEREHFEKEHGWTIKKMETEDQTLVQDCILENLDPSPIQDEYAPVIFSQETVSHI 472

Query: 64   ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
            +S+DM+SGKEDREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY  +LP +ATP +R
Sbjct: 473  VSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNADLPPDATPEQR 532

Query: 124  IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV 183
            IEAT GYLG  +D+ SLV+KLLHQLASKQTI VNVYD TN S PI+MYG+NV+D GL  +
Sbjct: 533  IEATVGYLGASYDVPSLVKKLLHQLASKQTIVVNVYDTTNASAPINMYGTNVTDTGLLRI 592

Query: 184  STLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDY 243
            S L+FGDP RKHEM CRFKQK P P  AI+ S+G+LVI  LVGHIF A +NRIAKVE DY
Sbjct: 593  SNLDFGDPARKHEMHCRFKQKPPPPWTAITASVGVLVITLLVGHIFHAAINRIAKVEGDY 652

Query: 244  HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
              MMELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMD+ LD  QQDY  TA A
Sbjct: 653  RQMMELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDSGLDANQQDYAETAHA 712

Query: 304  SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 363
            SGK L+SLINEVLDQAK+ESG+LELEAV F+LRA LD+VLSLFSGKS +KG+ELAVYISD
Sbjct: 713  SGKDLISLINEVLDQAKIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISD 772

Query: 364  RVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL------ 416
            +VPE +IGDPGRFRQIITNL+GNSIKFT +KGHIFV+V+L +EVV   ++  E+      
Sbjct: 773  QVPEFVIGDPGRFRQIITNLVGNSIKFTHDKGHIFVSVHLADEVVGPPDLRDEVLRQSLN 832

Query: 417  ------SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
                  ++S NTLSG+PV +R  SW+ FK  +    T   + +S  +I L+V+VEDTG G
Sbjct: 833  IVHDSSNNSYNTLSGFPVVNRWKSWEKFKKLS---CTDSMEETS--IIKLLVTVEDTGVG 887

Query: 471  IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
            IP EAQSRIF PFMQ   S SRT+GGTGIGLSISK LV  M GEIGF S P  GSTF+FT
Sbjct: 888  IPSEAQSRIFMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFESEPGTGSTFSFT 947

Query: 531  AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 590
              F  G ++    +++Q  + P    SEFQ ++ALVVD R IRA+V+RYH+QRLGI V+ 
Sbjct: 948  VAFTKGETSL--LDTKQQPHDP--AGSEFQELRALVVDCRSIRAEVTRYHLQRLGISVDK 1003

Query: 591  VSDQLQCLSQIA-----SGSKIINMILVEQEVWEKDTS-VSTLFVNNLRKLGC----GFQ 640
                +   S ++     S S  + M+LV++EVW+K+   V    +  LR  G       +
Sbjct: 1004 TFSLISACSYLSNNSDPSASTSVAMVLVDKEVWDKEAGLVFHHMLKELRPNGTVEVQEKR 1063

Query: 641  SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 700
             K+FLL  S+SS+  N       + +V+MKPLR S+L +  Q   G+G +      +   
Sbjct: 1064 PKIFLLDTSLSSAERNELKSAGFVDNVLMKPLRLSVLISCFQEVFGIGKRKQANRGK--P 1121

Query: 701  MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
            ++L +LL  ++IL+VDDN VN +VA   LK+YGA V CV+ GK A  +L PPH FDACFM
Sbjct: 1122 LTLGNLLREKRILVVDDNAVNRRVAEFALKKYGAIVTCVDSGKAALLMLKPPHNFDACFM 1181

Query: 761  DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
            D+QMPEMDGF AT+ IR ME   N RI+ GEVSIE + NV+ +H PILAMTADVIQA  E
Sbjct: 1182 DLQMPEMDGFRATQEIRRMESKVNERIKSGEVSIEMFANVAYWHTPILAMTADVIQANNE 1241

Query: 821  ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            EC++ GMDGYV+KPFE +QLY  V+ FF
Sbjct: 1242 ECMKCGMDGYVAKPFEEDQLYSAVAHFF 1269


>gi|255581802|ref|XP_002531702.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
 gi|223528678|gb|EEF30693.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
          Length = 922

 Score =  972 bits (2512), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/868 (57%), Positives = 623/868 (71%), Gaps = 39/868 (4%)

Query: 9   IRVLRSEREEFEKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHV 63
           ++VL SERE+FEK+ GWTI++M+T +   V      K +P+PI++EYAPVIF+Q+TV+H+
Sbjct: 63  LKVLHSEREQFEKKHGWTIRKMETEDQTLVQDCIPEKLDPAPIQDEYAPVIFSQETVAHI 122

Query: 64  ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
           +S+DM+SGKEDREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY  +LP NATP ER
Sbjct: 123 VSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNADLPLNATPEER 182

Query: 124 IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV 183
           IEAT GYLG  +D+ SLVEKLLHQLASKQTI VNVYD TN S PI MYG++  D GL  +
Sbjct: 183 IEATVGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPILMYGTDYVDTGLLHI 242

Query: 184 STLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDY 243
           S L+FGDP R+HEM C FKQK   P  AI+ S+G+LVI  LVGHIF A ++RIAKVEEDY
Sbjct: 243 SNLDFGDPMRRHEMHCSFKQKPTLPWTAINASVGVLVITLLVGHIFYAAISRIAKVEEDY 302

Query: 244 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
             MM LK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD  Q D+ +TA A
Sbjct: 303 REMMMLKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDANQMDFAQTAHA 362

Query: 304 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 363
           SGK L+SLINEVLDQAK+ESG+LELEAVSF+LR++LD++LSLFSGKS +KG+ELA+Y+S 
Sbjct: 363 SGKDLISLINEVLDQAKIESGRLELEAVSFDLRSVLDNILSLFSGKSNEKGIELAIYVSS 422

Query: 364 RVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL------ 416
           +VPE +IGDPGRFRQIITNL+GNS+KFT +KGHIFV+V+L +EV  ++ V   +      
Sbjct: 423 QVPEVVIGDPGRFRQIITNLVGNSVKFTRDKGHIFVSVHLADEVRSTLNVRDAVLKQGLN 482

Query: 417 ------SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
                 +   NTLSG PV DR  SW  FK  N   +        +++I L+V+VEDTG G
Sbjct: 483 LVQDMQNEIDNTLSGCPVVDRWKSWANFKRLNSKDTM-----EESEMIRLLVTVEDTGVG 537

Query: 471 IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
           IPL+A SRIF+PFMQ   S SRT+GGTGIGLSISK LV  M GEIGFVS P  GSTF+FT
Sbjct: 538 IPLDAHSRIFSPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGTGSTFSFT 597

Query: 531 AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 590
           A F  G   S +   Q  +  P  +  E QG +ALV+D R IRA+V+RYH+QRLGI  ++
Sbjct: 598 ASFRKGDLRSLDTKWQPYD--PTGL--ELQGWRALVIDKRSIRAEVTRYHLQRLGITADM 653

Query: 591 VSDQLQCLSQIASGSKI-----INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ----- 640
            S      S  + G          ++L++++ W  +T  +   +    K   G +     
Sbjct: 654 ASSLKSACSYQSGGRHTSAPADFGLVLIDKDAWHNETGFAFRQLLKESKQNGGTEMIIDL 713

Query: 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 700
            K+FLLA +I+            + ++IMKPLR S+L +  Q A+G G K  + N   PS
Sbjct: 714 PKIFLLATTINPEERRELLSAGLVDNIIMKPLRLSVLFSCFQEAIGSGKKSQV-NRRKPS 772

Query: 701 MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
            +L++LL  ++IL+VDDN VN +VA   LK+YGA V CVE GK+A ELL PPH FDACFM
Sbjct: 773 -TLQNLLREKRILVVDDNKVNRRVAEGALKKYGAIVTCVESGKEALELLKPPHTFDACFM 831

Query: 761 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
           D  MPE+DGFEAT+ IR  E  FN +I  GEVS+E + NV+ +H PILAMTADVIQAT E
Sbjct: 832 DRHMPELDGFEATRQIRARERQFNEQIASGEVSMEMFGNVAYWHTPILAMTADVIQATNE 891

Query: 821 ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           EC + GMD +VSKPFE EQLY  V+ FF
Sbjct: 892 ECRKCGMDDFVSKPFEEEQLYNAVAPFF 919


>gi|296085009|emb|CBI28424.3| unnamed protein product [Vitis vinifera]
          Length = 1203

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/856 (58%), Positives = 614/856 (71%), Gaps = 57/856 (6%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-----EPSPIEEEYAPVIFAQDTVSHV 63
            ++VL SERE FEK+ GWTIK+M+T +   V        +PSPI++EYAPVIF+Q+TVSH+
Sbjct: 386  LKVLHSEREHFEKEHGWTIKKMETEDQTLVQDCILENLDPSPIQDEYAPVIFSQETVSHI 445

Query: 64   ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
            +S+DM+SGKEDREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY  +LP +ATP +R
Sbjct: 446  VSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNADLPPDATPEQR 505

Query: 124  IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV 183
            IEAT GYLG  +D+ SLV+KLLHQLASKQTI VNVYD TN S PI+MYG+NV+D GL  +
Sbjct: 506  IEATVGYLGASYDVPSLVKKLLHQLASKQTIVVNVYDTTNASAPINMYGTNVTDTGLLRI 565

Query: 184  STLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDY 243
            S L+FGDP RKHEM CRFKQK P P  AI+ S+G+LVI  LVGHIF A +NRIAKVE DY
Sbjct: 566  SNLDFGDPARKHEMHCRFKQKPPPPWTAITASVGVLVITLLVGHIFHAAINRIAKVEGDY 625

Query: 244  HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
              MMELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMD+ LD  QQDY  TA A
Sbjct: 626  RQMMELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDSGLDANQQDYAETAHA 685

Query: 304  SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 363
            SGK L+SLINEVLDQAK+ESG+LELEAV F+LRA LD+VLSLFSGKS +KG+ELAVYISD
Sbjct: 686  SGKDLISLINEVLDQAKIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISD 745

Query: 364  RVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETELSSSKNT 422
            +VPE +IGDPGRFRQIITNL+GNSIKFT +KGHIFV+V+L +EV                
Sbjct: 746  QVPEFVIGDPGRFRQIITNLVGNSIKFTHDKGHIFVSVHLADEV---------------- 789

Query: 423  LSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 482
                              F +   T   + +S  +I L+V+VEDTG GIP EAQSRIF P
Sbjct: 790  -----------------KFKKLSCTDSMEETS--IIKLLVTVEDTGVGIPSEAQSRIFMP 830

Query: 483  FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNE 542
            FMQ   S SRT+GGTGIGLSISK LV  M GEIGF S P  GSTF+FT  F  G ++   
Sbjct: 831  FMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFESEPGTGSTFSFTVAFTKGETSL-- 888

Query: 543  HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA 602
             +++Q  + P    SEFQ ++ALVVD R IRA+V+RYH+QRLGI V+     +   S ++
Sbjct: 889  LDTKQQPHDP--AGSEFQELRALVVDCRSIRAEVTRYHLQRLGISVDKTFSLISACSYLS 946

Query: 603  -----SGSKIINMILVEQEVWEKDTS-VSTLFVNNLRKLGC----GFQSKLFLLANSISS 652
                 S S  + M+LV++EVW+K+   V    +  LR  G       + K+FLL  S+SS
Sbjct: 947  NNSDPSASTSVAMVLVDKEVWDKEAGLVFHHMLKELRPNGTVEVQEKRPKIFLLDTSLSS 1006

Query: 653  SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKI 712
            +  N       + +V+MKPLR S+L +  Q   G+G +      +   ++L +LL  ++I
Sbjct: 1007 AERNELKSAGFVDNVLMKPLRLSVLISCFQEVFGIGKRKQANRGK--PLTLGNLLREKRI 1064

Query: 713  LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEA 772
            L+VDDN VN +VA   LK+YGA V CV+ GK A  +L PPH FDACFMD+QMPEMDGF A
Sbjct: 1065 LVVDDNAVNRRVAEFALKKYGAIVTCVDSGKAALLMLKPPHNFDACFMDLQMPEMDGFRA 1124

Query: 773  TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832
            T+ IR ME   N RI+ GEVSIE + NV+ +H PILAMTADVIQA  EEC++ GMDGYV+
Sbjct: 1125 TQEIRRMESKVNERIKSGEVSIEMFANVAYWHTPILAMTADVIQANNEECMKCGMDGYVA 1184

Query: 833  KPFEAEQLYREVSRFF 848
            KPFE +QLY  V+ FF
Sbjct: 1185 KPFEEDQLYSAVAHFF 1200


>gi|224131798|ref|XP_002321181.1| histidine kinase cytokinin receptor [Populus trichocarpa]
 gi|222861954|gb|EEE99496.1| histidine kinase cytokinin receptor [Populus trichocarpa]
          Length = 1234

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/870 (57%), Positives = 635/870 (72%), Gaps = 43/870 (4%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHV 63
            ++V   ER++FE+Q GWTIK+M T +   V      K +P+PI++EYAPVIF+Q+TVSH+
Sbjct: 378  LKVPHLERKQFEEQHGWTIKKMGTEDQTLVQDCIPDKLDPAPIQDEYAPVIFSQETVSHI 437

Query: 64   ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
            +S+DM+SGKEDREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY  +LP +ATP +R
Sbjct: 438  VSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLP-DATPEQR 496

Query: 124  IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV 183
            I+AT GYLG  +D+ SLVEKLLHQL+SKQTI VNVYD TN + PI MYG++V+D GL  V
Sbjct: 497  IDATVGYLGASYDVPSLVEKLLHQLSSKQTIVVNVYDTTNATAPILMYGTDVTDTGLLHV 556

Query: 184  STLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDY 243
            S+L+FGDP RKHEM CRFK K P P  AI+ S+G+LVI  LVGHIF A +NRIAKVEEDY
Sbjct: 557  SSLDFGDPLRKHEMHCRFKHKPPLPWPAINASVGLLVITLLVGHIFHAAINRIAKVEEDY 616

Query: 244  HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
              MMELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLM+T+LDV Q DY  TA  
Sbjct: 617  REMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMETDLDVNQMDYANTAHT 676

Query: 304  SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE-LAVYIS 362
            SGK L++LINEVLDQAK+ESG+LELEAV F+LR++LD+VLSLFSGKS +KG+E LAVY+S
Sbjct: 677  SGKDLIALINEVLDQAKIESGRLELEAVPFDLRSVLDNVLSLFSGKSNEKGIEKLAVYVS 736

Query: 363  DRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL----- 416
            DR+PE +IGDPGRFRQIITNL+GNSIKFT +KGH+FV+V+L +EV   ++    +     
Sbjct: 737  DRLPEVVIGDPGRFRQIITNLVGNSIKFTRDKGHVFVSVHLADEVRSPLDARDAVLKQGL 796

Query: 417  -----SSSK--NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469
                 +SSK  ++LSG+PV +R  SW+ FK      S+        ++I L+V+VEDTG 
Sbjct: 797  ELVQDTSSKVYDSLSGFPVVNRWKSWEKFKK-----SSCIDSRDEPEMIRLLVTVEDTGV 851

Query: 470  GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 529
            GIP +AQ  IFTPFMQ   S SR +GGTGIGLSISK LV  M GEIGFVS   IGSTF+F
Sbjct: 852  GIPEDAQGNIFTPFMQADSSTSRKYGGTGIGLSISKCLVDLMGGEIGFVSECGIGSTFSF 911

Query: 530  TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 589
               F  G STS +   Q  +  P  +  E +G +ALV+D R +RA+V++YH+QRLGI  +
Sbjct: 912  IVSFRKGESTSLDTKWQPYD--PAVL--EVRGGRALVIDERSVRAEVTKYHLQRLGITAD 967

Query: 590  VVSDQLQCLSQIASGSKI-----INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ---- 640
            V        + ++SG        + ++L++++ W+K++ ++   +  + K   G      
Sbjct: 968  VAPSLKSACAYLSSGYCTSIPADLPIVLIDKDAWDKESGIAFHHLLKMPKKNDGTDIQVD 1027

Query: 641  -SKLFLLANSISSS-RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 698
             SK+FLLA +ISS  R    T G+ + +V++KPLR S+L A  Q A G G K  +   + 
Sbjct: 1028 LSKIFLLATTISSDERLELKTSGL-VDNVLVKPLRLSVLIACFQEAFGSGKKSEVNRKKP 1086

Query: 699  PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
            P  +L++LL G++IL+VDDN VN +VA   LK++GA V CVE GK A E L PPH FDAC
Sbjct: 1087 P--ALQNLLRGKQILVVDDNLVNRRVAEGALKKHGAIVTCVESGKAALEKLKPPHSFDAC 1144

Query: 759  FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
            FMD QMPEMDGFEAT+ IR ME  FN +I  G+ S+E   NV+ +H PILAMTADVIQAT
Sbjct: 1145 FMDFQMPEMDGFEATRQIRSMESQFNEKIASGKASMELPGNVAYWHTPILAMTADVIQAT 1204

Query: 819  YEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             EECL+ GMDGYVSKPFE E+LY  V+RFF
Sbjct: 1205 NEECLKCGMDGYVSKPFEDEKLYNAVTRFF 1234


>gi|190148355|gb|ACE63260.1| histidine kinase 2 [Betula pendula]
          Length = 1260

 Score =  946 bits (2444), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/870 (57%), Positives = 623/870 (71%), Gaps = 50/870 (5%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-----EPSPIEEEYAPVIFAQDTVSHV 63
            ++V  S RE+FE+Q GWTIK+M+T +   V +      +P+PI++EYAPVIF+Q+TVSH+
Sbjct: 408  LKVPHSMREQFERQHGWTIKKMETEDQTLVQECIPENLDPAPIQDEYAPVIFSQETVSHI 467

Query: 64   ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
            +S+DM+SGKEDR+N+LRARA+GKGVLT+PF+LLK+N LGV+LTFAVY  +LP +ATP +R
Sbjct: 468  VSIDMMSGKEDRDNILRARATGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPEKR 527

Query: 124  IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV 183
            IEAT GYLG  +D+ SLVEKLLHQLASKQ I VNVYD T+ S PI+MYG++V+D GL   
Sbjct: 528  IEATVGYLGASYDVPSLVEKLLHQLASKQMIVVNVYDTTDASSPINMYGTDVTDTGLLHT 587

Query: 184  STLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDY 243
            S L+FGDP RKHEM CRFKQK P P  AI+ S+G+LVI  LVGHIF A ++RIAKVE+DY
Sbjct: 588  SNLDFGDPLRKHEMHCRFKQKPPLPWTAINASVGLLVITLLVGHIFYAAISRIAKVEDDY 647

Query: 244  HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
              MMELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD  QQDY  TA A
Sbjct: 648  RKMMELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAIQQDYAETAHA 707

Query: 304  SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 363
            SGK L+SLINEVLD+AK+ESG+LELEAV F+LRA+LD+V SL SGKS D  +ELAVY+S+
Sbjct: 708  SGKDLISLINEVLDRAKIESGRLELEAVPFDLRAVLDNVSSLLSGKSYDIRMELAVYVSN 767

Query: 364  RVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETE-----LS 417
            RVPE +IGDPGRFRQIITNL+GNSIKFT + GHI ++V+L +EV    ++  E     LS
Sbjct: 768  RVPEVIIGDPGRFRQIITNLVGNSIKFTRDTGHILISVHLADEVNGGPDMMDEVMRQGLS 827

Query: 418  S-------SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
            S       + NTLSG+ V DR  SW+ FK      S         ++I L+V+VEDTG G
Sbjct: 828  SVHEMSDKTYNTLSGFRVVDRWKSWEHFKKLGCRNSM-----EEPEMIKLLVTVEDTGVG 882

Query: 471  IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
            IPLEAQSRIFTPFMQ   S SRT+GGTGIGLSI K LV  M GEIGFVS P +GSTF+FT
Sbjct: 883  IPLEAQSRIFTPFMQADSSTSRTYGGTGIGLSICKCLVDLMGGEIGFVSEPGVGSTFSFT 942

Query: 531  AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 590
             +F     T+ +   QQ   +P    SE +G++ALV+D R IRA+V+RYH+QRLGI  ++
Sbjct: 943  GLFRKVEVTTPDTKCQQY--EP--ALSELRGLRALVIDKRIIRAEVTRYHLQRLGISSDI 998

Query: 591  VSDQLQCLSQIASG-----SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS---- 641
                    S ++S      S   +M+L++++VW+K+TS+S  F  +L+  G   ++    
Sbjct: 999  TFSLKSACSYLSSACDTSVSAKFSMVLIDKDVWDKETSLS--FHLSLKDHGQNSRTEIPI 1056

Query: 642  ---KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 698
               K+FLLA SI             + +V++KPLR  +L A LQ A+G   K N +    
Sbjct: 1057 NLPKIFLLATSIGQDEHTELKSAGVVDNVLIKPLRLGVLGACLQEALG-RRKVNRKK--- 1112

Query: 699  PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
             S +L  LL  ++IL+VDDN VN +VA   LK+YGA V CVE GK A  +L PPH FDAC
Sbjct: 1113 -SSTLGSLLREKRILVVDDNAVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDAC 1171

Query: 759  FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
            FMD+QMPEMDGFEAT+ IR +E   N  +     S E + NV+ +H PILAMTADVI ++
Sbjct: 1172 FMDLQMPEMDGFEATRRIRSLESEANEEV----ASREMFGNVAYWHTPILAMTADVIHSS 1227

Query: 819  YEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             EEC++ GMD YVSKPFE  QLY  V+RFF
Sbjct: 1228 NEECMKCGMDDYVSKPFEEGQLYSAVARFF 1257


>gi|356553458|ref|XP_003545073.1| PREDICTED: histidine kinase 2-like [Glycine max]
          Length = 1225

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/870 (55%), Positives = 625/870 (71%), Gaps = 50/870 (5%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD------EPSPIEEEYAPVIFAQDTVSH 62
            ++VL S+R  FEKQ GWTIK+M+T E+  + +D      +P+PI++EYAPVIFAQ+TVSH
Sbjct: 372  LKVLHSDRMHFEKQHGWTIKKMET-ENEALVQDCIPENLDPAPIQDEYAPVIFAQETVSH 430

Query: 63   VISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNE 122
            ++S+DM+SGKEDREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY   LP +AT  +
Sbjct: 431  IVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPLDATLEQ 490

Query: 123  RIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL 182
            RIEAT GYLG  +D+ SLV+KLLHQLASKQTI VNVYD TN S PI+MYG++V+D GL  
Sbjct: 491  RIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMYGTDVADTGLLY 550

Query: 183  VSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEED 242
            +S+L+FGDP RKHEM C FKQ+ P P  AI+ S+G+ VI  L+GHIF A +NRIAKVE+D
Sbjct: 551  ISSLDFGDPLRKHEMHCSFKQRPPLPWTAINASVGVFVITLLLGHIFYAAINRIAKVEDD 610

Query: 243  YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQ 302
            Y  M ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD  Q D  +TA 
Sbjct: 611  YRQMRELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDENQMDCAQTAH 670

Query: 303  ASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 362
             SGK L+S+I+EVLDQAK+E+GKLELEAV+F+ RAILD++LSLFS KS +KG+ELAVY S
Sbjct: 671  KSGKDLISVISEVLDQAKIEAGKLELEAVAFDPRAILDEILSLFSEKSNEKGIELAVYAS 730

Query: 363  DRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL----- 416
            ++VP+ +IGDP RFRQIITNL+GNS+KFT +KGH+FV+V+L  EV + + +   +     
Sbjct: 731  NQVPKVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSVHLANEVKNPLHIMDAVLREGL 790

Query: 417  -------SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469
                   + + +TLSG+PV +R  SW  FK  +  G   P      ++I L+V VEDTG 
Sbjct: 791  NLNQDISNRTYDTLSGFPVCNRWKSWANFKQLS--GINEP------EIIQLLVIVEDTGI 842

Query: 470  GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 529
            GIP +AQSRIFTPFMQ   S SRT+GGTGIGLSISK LV  M GEIGFVS P IGSTF+F
Sbjct: 843  GIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSF 902

Query: 530  TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 589
            T  F  G STS   ++ Q NN      SEFQG++ LVVD R IRA+V+RYH+QRLG+ V+
Sbjct: 903  TGTFRKGESTS--LDAMQQNNH---FGSEFQGLRTLVVDSRKIRAEVTRYHLQRLGMSVD 957

Query: 590  V---VSDQLQCLSQIA--SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS--- 641
            V   ++    CLS +   S S  + MIL++++ W+K+  +  L+    R+   G +    
Sbjct: 958  VTYSLNSACSCLSNVCNKSMSTQLAMILIDKDAWDKECHI--LYTIKKRRQN-GIKGDPM 1014

Query: 642  ---KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 698
               K+FLLA  +SS+  +       I  ++MKPL  S L    + ++G  NK   R    
Sbjct: 1015 NLPKIFLLATHLSSNEQDGLKSVGIIDDILMKPLWLSSLIQCYRVSLGTENKRVNRK--- 1071

Query: 699  PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
                L +LL+ ++IL+VDDN VN +VA   L++YGA V  VE G+ A ++L  PH FDAC
Sbjct: 1072 KVSKLGNLLIDKQILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAALKMLKLPHNFDAC 1131

Query: 759  FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
            FMD+QMPEMDGFEAT+ IR +E   N +I  G+ S E + ++S +H+PILAMTAD  Q++
Sbjct: 1132 FMDLQMPEMDGFEATRQIRCLESEVNEKIACGQASAEMFGSISYWHIPILAMTADSTQSS 1191

Query: 819  YEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             EEC++ GMD YVSKPFE E+LY  ++RFF
Sbjct: 1192 NEECIKCGMDDYVSKPFEEEKLYMAMARFF 1221


>gi|297805122|ref|XP_002870445.1| hypothetical protein ARALYDRAFT_493633 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297316281|gb|EFH46704.1| hypothetical protein ARALYDRAFT_493633 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1176

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/862 (56%), Positives = 619/862 (71%), Gaps = 39/862 (4%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD------EPSPIEEEYAPVIFAQDTVSH 62
            ++V  SERE+FEK+ GWTIK+M+T E   V +D      +P+PI+ EYAPVIFAQ+TVSH
Sbjct: 333  LKVPHSEREKFEKEHGWTIKKMET-EDQTVVQDCVPENFDPAPIQAEYAPVIFAQETVSH 391

Query: 63   VISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNE 122
            ++S+DM+SG+EDREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY   LP +AT  +
Sbjct: 392  IVSVDMMSGEEDRENILRARASGKGVLTSPFKLLKSNNLGVVLTFAVYDTSLPPDATEEQ 451

Query: 123  RIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL 182
            R+ AT GYLG  +D+ SLVEKLLHQLASKQTI V+VYD TN S  I MYGS + D     
Sbjct: 452  RVGATIGYLGASYDMPSLVEKLLHQLASKQTIAVDVYDTTNTSGLIKMYGSEIGDISEQH 511

Query: 183  VSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEED 242
            +S+L+FGDP R HEM CRFK K P P  AI+TSI +LVI  LVG+IF   +NRIA VEED
Sbjct: 512  ISSLDFGDPSRNHEMHCRFKHKLPIPWTAITTSILVLVITFLVGYIFNEAINRIATVEED 571

Query: 243  YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQ 302
               M ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD  Q DY +TA 
Sbjct: 572  CQKMRELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAH 631

Query: 303  ASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 362
             SGK L SLINEVLDQAK+ESG+LELE V F++R ILD+V SL SGK+ +KG+ELAVY+S
Sbjct: 632  GSGKDLTSLINEVLDQAKIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVS 691

Query: 363  DRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL----- 416
             +VP+ ++GDP RFRQIITNL+GNSIKFT E+GHIF++V+L  EV + + +E  +     
Sbjct: 692  SQVPDVVVGDPSRFRQIITNLVGNSIKFTQERGHIFISVHLAAEVREPLNIEDAVLKQRL 751

Query: 417  ----SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 472
                S S  T+SG+P  +   SWK FKT          ++ ++D I L+V+VEDTG GIP
Sbjct: 752  ALGCSESGETVSGFPAVNAWGSWKNFKT------CYSTENHNSDKIKLLVTVEDTGVGIP 805

Query: 473  LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532
            ++AQ RIFTPFMQ   S SRT+GGTGIGLSISK LV  M+GE+GFVS P IGSTF+FT V
Sbjct: 806  VDAQGRIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTVV 865

Query: 533  FGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 592
            FG   + ++    ++     +    EF+G++ALV+D R IRA+V+ YH+QRLGI  ++VS
Sbjct: 866  FGKAQTNTSITKLERF----DLAIQEFKGLRALVIDNRNIRAEVTSYHLQRLGISADIVS 921

Query: 593  D-QLQCLSQIASGSKIINMILVEQEVW-EKDTSV-STLFVNNLRKLGCGFQSKLFLLANS 649
              ++ C S   S  + + M+L++++ W +KD SV   LF  +  K+      K+ LLA S
Sbjct: 922  SLRMACTS--VSKLENLAMVLIDKDAWNKKDFSVLDELFTRS--KVTFTRVPKIILLATS 977

Query: 650  IS-SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL 708
             + + R+   + G+ I  V++KPLR S+L   LQ  +  G K   R       +L HLL 
Sbjct: 978  ATLTERSEMKSSGL-IDEVVIKPLRMSVLICCLQETLVNGKK---RQPNRKRRNLGHLLR 1033

Query: 709  GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768
             ++IL+VDDN VN +VA   LK+YGA V CVE GK A  +L PPH FDACFMD+QMPEMD
Sbjct: 1034 EKQILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMD 1093

Query: 769  GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
            GFEAT+ +R++E   N +I  GEVS E +   S++HVPILAMTADVIQAT+EEC++ GMD
Sbjct: 1094 GFEATRRVRDLEREINKKIASGEVSAEMFCKFSSWHVPILAMTADVIQATHEECMKCGMD 1153

Query: 829  GYVSKPFEAEQLYREVSRFFPP 850
            GYVSKPFE E LY  V+RFF P
Sbjct: 1154 GYVSKPFEEEVLYTAVARFFEP 1175


>gi|18421494|ref|NP_568532.1| histidine kinase 2 [Arabidopsis thaliana]
 gi|75168995|sp|Q9C5U2.1|AHK2_ARATH RecName: Full=Histidine kinase 2; AltName: Full=Arabidopsis histidine
            kinase 2; Short=AtHK2; AltName: Full=Protein AUTHENTIC
            HIS-KINASE 2
 gi|13537196|dbj|BAB40774.1| histidine kinase [Arabidopsis thaliana]
 gi|332006631|gb|AED94014.1| histidine kinase 2 [Arabidopsis thaliana]
          Length = 1176

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/861 (55%), Positives = 615/861 (71%), Gaps = 36/861 (4%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD------EPSPIEEEYAPVIFAQDTVSH 62
            ++V  SERE+FEK+ GW IK+M+T E   V +D      +P+PI++EYAPVIFAQ+TVSH
Sbjct: 332  LKVPHSEREKFEKEHGWAIKKMET-EDQTVVQDCVPENFDPAPIQDEYAPVIFAQETVSH 390

Query: 63   VISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNE 122
            ++S+DM+SG+EDREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY   LP +AT  +
Sbjct: 391  IVSVDMMSGEEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYDTSLPPDATEEQ 450

Query: 123  RIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL 182
            R+EAT GYLG  +D+ SLVEKLLHQLASKQTI V+VYD TN S  I MYGS + D     
Sbjct: 451  RVEATIGYLGASYDMPSLVEKLLHQLASKQTIAVDVYDTTNTSGLIKMYGSEIGDISEQH 510

Query: 183  VSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEED 242
            +S+L+FGDP R HEM CRFK K P P  AI+ SI +LVI  LVG+I    +NRIA VEED
Sbjct: 511  ISSLDFGDPSRNHEMHCRFKHKLPIPWTAITPSILVLVITFLVGYILYEAINRIATVEED 570

Query: 243  YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQ 302
               M ELK +AEAAD+AKSQFLATVSHEIRTPMNGVLGML MLMDT+LD  Q DY +TA 
Sbjct: 571  CQKMRELKARAEAADIAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAH 630

Query: 303  ASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 362
             SGK L SLINEVLDQAK+ESG+LELE V F++R ILD+V SL SGK+ +KG+ELAVY+S
Sbjct: 631  GSGKDLTSLINEVLDQAKIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVS 690

Query: 363  DRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL----- 416
             +VP+ ++GDP RFRQIITNL+GNSIKFT E+GHIF++V+L +EV + + +E  +     
Sbjct: 691  SQVPDVVVGDPSRFRQIITNLVGNSIKFTQERGHIFISVHLADEVKEPLTIEDAVLKQRL 750

Query: 417  ----SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 472
                S S  T+SG+P  +   SWK FKT          +S ++D I L+V+VEDTG GIP
Sbjct: 751  ALGCSESGETVSGFPAVNAWGSWKNFKT------CYSTESQNSDQIKLLVTVEDTGVGIP 804

Query: 473  LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532
            ++AQ RIFTPFMQ   S SRT+GGTGIGLSISK LV  M+GE+GFVS P IGSTF+FT V
Sbjct: 805  VDAQGRIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTGV 864

Query: 533  FGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 592
            FG   + ++    ++     +    EF G++ALV+D R IRA+V+RY ++RLGI  ++VS
Sbjct: 865  FGKAETNTSITKLERF----DLAIQEFTGLRALVIDNRNIRAEVTRYELRRLGISADIVS 920

Query: 593  DQLQCLSQIASGSKIINMILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
                  +   S  + + MIL++++ W K+  + +  LF  +  K+      K+FLLA S 
Sbjct: 921  SLRMACTCCISKLENLAMILIDKDAWNKEEFSVLDELFTRS--KVTFTRVPKIFLLATSA 978

Query: 651  S-SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG 709
            + + R+   + G+ I  V++KPLR S+L   LQ  +  G K   R       +L HLL  
Sbjct: 979  TLTERSEMKSTGL-IDEVVIKPLRMSVLICCLQETLVNGKK---RQPNRQRRNLGHLLRE 1034

Query: 710  RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
            ++IL+VDDN VN +VA   LK+YGA V CVE GK A  +L PPH FDACFMD+QMPEMDG
Sbjct: 1035 KQILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDG 1094

Query: 770  FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
            FEAT+ +RE+E   N +I  GEVS E +   S++HVPILAMTADVIQAT+EEC++ GMDG
Sbjct: 1095 FEATRRVRELEREINKKIASGEVSAEMFCKFSSWHVPILAMTADVIQATHEECMKCGMDG 1154

Query: 830  YVSKPFEAEQLYREVSRFFPP 850
            YVSKPFE E LY  V+RFF P
Sbjct: 1155 YVSKPFEEEVLYTAVARFFEP 1175


>gi|22353121|gb|AAM14700.1| cytokinin receptor [Catharanthus roseus]
          Length = 1041

 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/871 (55%), Positives = 613/871 (70%), Gaps = 47/871 (5%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD------EPSPIEEEYAPVIFAQDTVSH 62
            +RVL SERE+FEKQQGW I++MDT E   + +D      EP+P++ EYAPVIFAQ TVSH
Sbjct: 184  LRVLHSEREKFEKQQGWIIRKMDT-EVQTLGQDLVPEKLEPAPVQTEYAPVIFAQKTVSH 242

Query: 63   VISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNE 122
            ++S+DM+SGKEDREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY  +LP  AT  +
Sbjct: 243  IVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPEATREQ 302

Query: 123  RIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL 182
            RI AT GYLG  +D+ SLVEKLLHQLASKQTI VNVYD T+ S PI MYG   +D GL  
Sbjct: 303  RINATVGYLGASYDVPSLVEKLLHQLASKQTIAVNVYDTTDKSAPIKMYGDAANDTGLPR 362

Query: 183  VSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEED 242
            +S L+FGDP RKHEM CRFKQK P P  AI  S+G+LVI  L+GHIF A +NRIAKVE D
Sbjct: 363  ISQLDFGDPSRKHEMHCRFKQKPPPPWTAIIASVGVLVITLLLGHIFHAAINRIAKVERD 422

Query: 243  YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQ 302
            Y  MM LK +AEAAD+AKSQFLATVSHEIRTPM GVLGML MLM T LDV Q DY  TA 
Sbjct: 423  YREMMALKHRAEAADIAKSQFLATVSHEIRTPMVGVLGMLQMLMGTNLDVKQLDYAETAH 482

Query: 303  ASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 362
            ASGK L+SLINEVLDQAK+ESG+LELEAV F+LRA LD V+SL SGKS +K +ELAVY+S
Sbjct: 483  ASGKDLISLINEVLDQAKIESGRLELEAVPFDLRADLDKVVSLLSGKSHEKDIELAVYVS 542

Query: 363  DRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL----- 416
            D+VPE +IGDPGRFRQIITNL+GNSIKFT +KGHIFV+V+L +EV   ++++ E+     
Sbjct: 543  DQVPEVVIGDPGRFRQIITNLVGNSIKFTKDKGHIFVSVHLADEVKSPLDIKDEVLKQSL 602

Query: 417  -------SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469
                   ++S NTLSG+PV DR  SW+ FK      S  P +S     I L+V+VEDTG 
Sbjct: 603  TLIQDRSTASFNTLSGFPVVDRWRSWEKFKNL----SGMPEESKK---IKLLVTVEDTGD 655

Query: 470  GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 529
            GI  +AQ RIFTPF+Q   S SR +GGTGIGLSISK LV  + GEIGFVS P  GSTF+F
Sbjct: 656  GIVYDAQDRIFTPFVQADSSTSRKYGGTGIGLSISKRLVDLVGGEIGFVSEPGTGSTFSF 715

Query: 530  TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 589
            TA F    + +     +Q     +   SEF+G+KALVVD + IRA+V+RY ++RL + V+
Sbjct: 716  TAAFTKAETITGITKWEQY----DLAVSEFRGLKALVVDEKSIRAEVTRYQLKRLEVSVD 771

Query: 590  VVSDQLQCLSQI-----ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL-------GC 637
            + S      S +     +S S+ ++M+L++++ W  D  +   +V  L+K          
Sbjct: 772  IASTVEAAYSHLSADVNSSASERVSMVLIDEDSW--DNEIMARYVGCLKKSDQTASRPSM 829

Query: 638  GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 697
            G   K+FLLAN  S S          + +V+ KPLR S+L + LQ ++G G    +    
Sbjct: 830  GMNPKIFLLANPKSFSDCIELKSTGLVDNVLTKPLRLSILISCLQESIGFGRTRQVTR-S 888

Query: 698  LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 757
             PS ++ +LL G+++L+VDDN VN KVA   L++YGA V C   G+ A + L PPH FDA
Sbjct: 889  NPS-TIGNLLKGKRMLVVDDNPVNRKVAELALRKYGAVVTCEASGEAALQRLKPPHDFDA 947

Query: 758  CFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQA 817
            CFMD+QMPEMDGFEAT+ IR +E  +N  ++ GE+  +   + + +H PILAMTAD+IQA
Sbjct: 948  CFMDLQMPEMDGFEATQKIRHLEREYNENVKSGEIGTDKSTDEAYWHTPILAMTADLIQA 1007

Query: 818  TYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            T E+C + GMDGYVSKPF+ EQLY  V+ FF
Sbjct: 1008 TNEKCRKCGMDGYVSKPFDDEQLYSAVAPFF 1038


>gi|356499485|ref|XP_003518570.1| PREDICTED: histidine kinase 2-like [Glycine max]
          Length = 1282

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/867 (55%), Positives = 619/867 (71%), Gaps = 47/867 (5%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHV 63
            ++VL S+R  FEKQ GWTIK+M+T     V      K +P+PI++EYAPVIFAQ+TVSH+
Sbjct: 432  LKVLHSDRMHFEKQHGWTIKKMETENEALVQDCIPEKLDPAPIQDEYAPVIFAQETVSHI 491

Query: 64   ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
            +S+DM+SGKED EN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY   LP +ATP +R
Sbjct: 492  VSIDMMSGKEDHENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPLDATPEQR 551

Query: 124  IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV 183
             EAT GYLG  +D+ SLV+KLLHQLASKQTI VNVYD TN S PI+MYG++V+D GL  +
Sbjct: 552  TEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMYGTDVADTGLLHI 611

Query: 184  STLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDY 243
            S+L+FGDP RKHEM CRFKQ+ P P  AI+ S+G+ VI  L+GHIF A +NRIAKVE DY
Sbjct: 612  SSLDFGDPLRKHEMHCRFKQRPPLPWTAINASVGVFVITLLLGHIFYAAINRIAKVEADY 671

Query: 244  HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
              M ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD  Q D  +TA  
Sbjct: 672  RQMRELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDENQMDCAQTAHK 731

Query: 304  SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 363
            SGK L+S+I+EVLDQAK+E+GKLELEAV+F+ RAILD+VLSLFS KS +KG+ELAVY S+
Sbjct: 732  SGKDLISVISEVLDQAKIEAGKLELEAVAFDPRAILDEVLSLFSEKSNEKGIELAVYASN 791

Query: 364  RVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL------ 416
            +VP+ +IGDP RFRQIITNL+GNS+KFT +KGH+FV+V+L  EV + + +   +      
Sbjct: 792  QVPKVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSVHLASEVKNPLHIMDAVLREGLN 851

Query: 417  ------SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
                  + + +TLSG+PV +R  SW  F   +  G+  P      ++I L+V VEDTG G
Sbjct: 852  LSQDITNRTYDTLSGFPVCNRWKSWANFTKLS--GTNEP------EIIQLLVIVEDTGIG 903

Query: 471  IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
            IP +AQSRIFTPFMQ   S SRT+GGTGIGLSIS+ LV  M GEIGFVS P IGSTF+FT
Sbjct: 904  IPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISRCLVDLMGGEIGFVSEPGIGSTFSFT 963

Query: 531  AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 590
              F  G STS +   Q      N   SEFQ ++ LVVD R IRA+V++YH+QRLG+ V+V
Sbjct: 964  GTFRKGESTSLDAMRQN-----NHFGSEFQELRTLVVDRRKIRAEVTKYHLQRLGMSVDV 1018

Query: 591  ---VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS------ 641
               ++    CLS + + S ++ MIL++++ W+K+  +  L+    R+   G +       
Sbjct: 1019 TYSLNSACSCLSNVCNMS-MLAMILIDKDAWDKEYHI--LYTIKKRRQN-GIKGDPLNLP 1074

Query: 642  KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 701
            K+FLLA  +SS+  +       I  ++MKPL  S L    + ++G  NK   R       
Sbjct: 1075 KIFLLATHLSSNEQDELKSVGVIDDILMKPLWFSSLIQCYRESLGTENKRVNRK---KVS 1131

Query: 702  SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761
             L +LL+ ++IL+VDDN VN +VA   L++YGA V  VE G+ A ++L  PH FDACFMD
Sbjct: 1132 KLGNLLIDKQILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAALKMLELPHNFDACFMD 1191

Query: 762  IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 821
            +QMPEMDGFEAT+ IR +E   N +I  G+ S E + N+S +H+PILAMTAD  Q++ EE
Sbjct: 1192 LQMPEMDGFEATRKIRCLESEVNEKIACGQASAEMFGNISYWHIPILAMTADSTQSSNEE 1251

Query: 822  CLRSGMDGYVSKPFEAEQLYREVSRFF 848
            C++ GM+ YVSKPFE EQLY  ++RFF
Sbjct: 1252 CIKCGMNDYVSKPFEEEQLYMAMARFF 1278


>gi|449444494|ref|XP_004140009.1| PREDICTED: histidine kinase 2-like [Cucumis sativus]
          Length = 1240

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/868 (56%), Positives = 614/868 (70%), Gaps = 41/868 (4%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-----EPSPIEEEYAPVIFAQDTVSHV 63
            ++V  SERE FE   GWTIK+M+T +   V        EP+PI +EYAPVIF+Q+TV+H+
Sbjct: 383  LKVNHSEREHFEVMHGWTIKKMETEDQTLVQDCNPENLEPAPIRDEYAPVIFSQETVAHI 442

Query: 64   ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
            +S+DM+SGKEDREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY  +LP +ATP +R
Sbjct: 443  VSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYSTDLPLDATPEQR 502

Query: 124  IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV 183
            IEAT GYLG  +DI SLVEKLLHQLASKQTI VNVYD TN S PI+MYGS+ +D GL  +
Sbjct: 503  IEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNESAPINMYGSDFTDTGLLHI 562

Query: 184  STLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDY 243
            S L+FGDP R+HEM CRFK K P P  AI++S+G+L+I  LVGHIF A ++RIAKVE DY
Sbjct: 563  SKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSVGVLIITLLVGHIFHAAISRIAKVENDY 622

Query: 244  HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
            H MM+LK  AEAADVAKSQFLATVSHEIRTPMNGVLGML +LMDT LD  Q D+ +TA  
Sbjct: 623  HKMMDLKSLAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDSKQLDFAQTAHE 682

Query: 304  SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 363
            SGK L+SLIN+VLDQAK+ESG LELE+V F+LR I+D V+S FS KS +KG+ELAVY+SD
Sbjct: 683  SGKDLISLINKVLDQAKIESGSLELESVPFDLRDIVDKVVSPFSLKSNEKGIELAVYVSD 742

Query: 364  RVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEV---VDSIEVETELSS- 418
             VPE +IGD GRFRQIIT+L+GNS+KFT  KGHI V+V+L +EV   VD +++  +  S 
Sbjct: 743  LVPEVVIGDHGRFRQIITHLVGNSLKFTHNKGHILVSVHLADEVRATVDFMDIVLKQGSY 802

Query: 419  --------SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
                    S  T SG PV DR  SW+ FK F   G T   + S   +I ++V+VEDTG G
Sbjct: 803  IVGDTSNNSCTTFSGLPVVDRWKSWEDFKKF---GRTDVVEESK--MIRILVTVEDTGVG 857

Query: 471  IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
            IP  AQSRIFTPFMQ   S SRT+GGTGIGLSISK LV  M GEIGFVS P IGSTF+FT
Sbjct: 858  IPQNAQSRIFTPFMQADSSTSRTYGGTGIGLSISKRLVDLMDGEIGFVSEPGIGSTFSFT 917

Query: 531  AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 590
              F  G ++  +    Q +        EFQG++AL++D   IRA+V+RYH+QRLGI V++
Sbjct: 918  VSFQKGETSILDTRQPQYDVGVR----EFQGLRALIIDNSCIRAEVTRYHLQRLGISVDI 973

Query: 591  V---SDQLQCLSQIAS--GSKIINMILVEQEVWEKDTSVS--TLFVNNLRKLGCGFQ--- 640
                    Q LS  +    S  + MIL+++++W+K   +    LF  ++ + G   Q   
Sbjct: 974  TLSAQSAYQYLSNTSHTRASTQLAMILIDRDIWDKKMGLKFHHLFKEHVDRSGTDVQMNG 1033

Query: 641  SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 700
             KLF+LA   SS+  N       + +V+ KPL+   L +  + A G+  +  +   + PS
Sbjct: 1034 PKLFVLATPKSSNEHNELKSSGHVNNVLSKPLQLDALVSCFREAFGIEKRNQVI-IKKPS 1092

Query: 701  MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
             +LR+LL  + IL+VDDN VN++VA   LK+YGA V CV+ GK A  LL PPH FDACFM
Sbjct: 1093 -TLRNLLKEKHILVVDDNAVNIRVAEGALKKYGAIVTCVKCGKDAVALLNPPHNFDACFM 1151

Query: 761  DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
            D+QMPEMDG+EAT+ +R +E   N +I  GEVSIE   N  ++H PI AMTAD+IQ   E
Sbjct: 1152 DLQMPEMDGYEATRQVRAVECGVNAKITSGEVSIE--NNKIHWHTPIFAMTADLIQDMNE 1209

Query: 821  ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            ECL+ GMDGYV+KPFE EQLY  V+RFF
Sbjct: 1210 ECLKCGMDGYVAKPFEEEQLYSAVARFF 1237


>gi|9758650|dbj|BAB09274.1| histidine kinase-like protein [Arabidopsis thaliana]
          Length = 1173

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/860 (55%), Positives = 613/860 (71%), Gaps = 37/860 (4%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD------EPSPIEEEYAPVIFAQDTVSH 62
            ++V  SERE+FEK+ GW IK+M+T E   V +D      +P+PI++EYAPVIFAQ+TVSH
Sbjct: 332  LKVPHSEREKFEKEHGWAIKKMET-EDQTVVQDCVPENFDPAPIQDEYAPVIFAQETVSH 390

Query: 63   VISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNE 122
            ++S+DM+SG+EDREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY   LP +AT  +
Sbjct: 391  IVSVDMMSGEEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYDTSLPPDATEEQ 450

Query: 123  RIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL 182
            R+EAT GYLG  +D+ SLVEKLLHQLASKQTI V+VYD TN S  I MYGS + D     
Sbjct: 451  RVEATIGYLGASYDMPSLVEKLLHQLASKQTIAVDVYDTTNTSGLIKMYGSEIGDISEQH 510

Query: 183  VSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEED 242
            +S+L+FGDP R HEM CRFK K P P  AI+ SI +LVI  LVG+I    +NRIA VEED
Sbjct: 511  ISSLDFGDPSRNHEMHCRFKHKLPIPWTAITPSILVLVITFLVGYILYEAINRIATVEED 570

Query: 243  YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQ 302
               M ELK +AEAAD+AKSQFLATVSHEIRTPMNGVLGML MLMDT+LD  Q DY +TA 
Sbjct: 571  CQKMRELKARAEAADIAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAH 630

Query: 303  ASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 362
             SGK L SLINEVLDQAK+ESG+LELE V F++R ILD+V SL SGK+ +KG+ELAVY+S
Sbjct: 631  GSGKDLTSLINEVLDQAKIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVS 690

Query: 363  DRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL------ 416
             +VP+ ++GDP RFRQIITNL+GNSIK  E+GHIF++V+L +EV + + +E  +      
Sbjct: 691  SQVPDVVVGDPSRFRQIITNLVGNSIK--ERGHIFISVHLADEVKEPLTIEDAVLKQRLA 748

Query: 417  ---SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 473
               S S  T+SG+P  +   SWK FKT          +S ++D I L+V+VEDTG GIP+
Sbjct: 749  LGCSESGETVSGFPAVNAWGSWKNFKTCYST------ESQNSDQIKLLVTVEDTGVGIPV 802

Query: 474  EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533
            +AQ RIFTPFMQ   S SRT+GGTGIGLSISK LV  M+GE+GFVS P IGSTF+FT VF
Sbjct: 803  DAQGRIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTGVF 862

Query: 534  GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 593
            G   + ++    ++     +    EF G++ALV+D R IRA+V+RY ++RLGI  ++VS 
Sbjct: 863  GKAETNTSITKLERF----DLAIQEFTGLRALVIDNRNIRAEVTRYELRRLGISADIVSS 918

Query: 594  QLQCLSQIASGSKIINMILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQSKLFLLANSIS 651
                 +   S  + + MIL++++ W K+  + +  LF  +  K+      K+FLLA S +
Sbjct: 919  LRMACTCCISKLENLAMILIDKDAWNKEEFSVLDELFTRS--KVTFTRVPKIFLLATSAT 976

Query: 652  -SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
             + R+   + G+ I  V++KPLR S+L   LQ  +  G K   R       +L HLL  +
Sbjct: 977  LTERSEMKSTGL-IDEVVIKPLRMSVLICCLQETLVNGKK---RQPNRQRRNLGHLLREK 1032

Query: 711  KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            +IL+VDDN VN +VA   LK+YGA V CVE GK A  +L PPH FDACFMD+QMPEMDGF
Sbjct: 1033 QILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDGF 1092

Query: 771  EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            EAT+ +RE+E   N +I  GEVS E +   S++HVPILAMTADVIQAT+EEC++ GMDGY
Sbjct: 1093 EATRRVRELEREINKKIASGEVSAEMFCKFSSWHVPILAMTADVIQATHEECMKCGMDGY 1152

Query: 831  VSKPFEAEQLYREVSRFFPP 850
            VSKPFE E LY  V+RFF P
Sbjct: 1153 VSKPFEEEVLYTAVARFFEP 1172


>gi|449505124|ref|XP_004162383.1| PREDICTED: histidine kinase 2-like [Cucumis sativus]
          Length = 1240

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/868 (56%), Positives = 614/868 (70%), Gaps = 41/868 (4%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-----EPSPIEEEYAPVIFAQDTVSHV 63
            ++V  SERE FE   GWTIK+M+T +   V        EP+PI +EYAPVIF+Q+TV+H+
Sbjct: 383  LKVNHSEREHFEVMHGWTIKKMETEDQTLVQDCNPENLEPAPIRDEYAPVIFSQETVAHI 442

Query: 64   ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
            +S+DM+SGKEDREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY  +LP +ATP +R
Sbjct: 443  VSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYSTDLPLDATPEQR 502

Query: 124  IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV 183
            IEAT GYLG  +DI SLVEKLLHQLASKQTI VNVYD TN S PI+MYGS+ +D GL  +
Sbjct: 503  IEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNESAPINMYGSDFTDTGLLHI 562

Query: 184  STLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDY 243
            S L+FGDP R+HEM CRFK K P P  AI++S+G+L+I  LVGHIF A ++RIAKVE DY
Sbjct: 563  SKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSVGVLIITLLVGHIFHAAISRIAKVENDY 622

Query: 244  HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
            H MM+LK  AEAADVAKSQFLATVSHEIRTPMNGVLGML +LMDT LD  Q D+ +TA  
Sbjct: 623  HKMMDLKSLAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDSKQLDFAQTAHE 682

Query: 304  SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 363
            SGK L+SLIN+VLDQAK+ESG LELE+V F+LR I+D V+S FS KS +KG+ELAVY+SD
Sbjct: 683  SGKDLISLINKVLDQAKIESGSLELESVPFDLRDIVDKVVSPFSLKSNEKGIELAVYVSD 742

Query: 364  RVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEV---VDSIEVETELSS- 418
             VPE +IGD GRFRQIIT+L+GNS+KFT  KGHI V+V+L +EV   VD +++  +  S 
Sbjct: 743  LVPEVVIGDHGRFRQIITHLVGNSLKFTHNKGHILVSVHLADEVRGTVDFMDIVLKQGSY 802

Query: 419  --------SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
                    S  T SG PV DR  SW+ FK F   G T   + S   +I ++V+VEDTG G
Sbjct: 803  IVGDTSNNSCTTFSGLPVVDRWKSWEDFKKF---GRTDVVEESK--MIRILVTVEDTGVG 857

Query: 471  IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
            IP  AQSRIFTPFMQ   S SRT+GGTGIGLSISK LV  M GEIGFVS P IGSTF+FT
Sbjct: 858  IPQNAQSRIFTPFMQADSSTSRTYGGTGIGLSISKRLVDLMDGEIGFVSEPGIGSTFSFT 917

Query: 531  AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 590
              F  G ++  +    Q +        EFQG++AL++D   IRA+V+RYH+QRLGI V++
Sbjct: 918  VSFQKGETSILDTRQPQYDVGVR----EFQGLRALIIDNSCIRAEVTRYHLQRLGISVDI 973

Query: 591  V---SDQLQCLSQIAS--GSKIINMILVEQEVWEKDTSVS--TLFVNNLRKLGCGFQ--- 640
                    Q LS  +    S  + MIL+++++W+K   +    LF  ++ + G   Q   
Sbjct: 974  TLSAQSAYQYLSNTSHTRASTQLAMILIDRDIWDKKMGLKFHHLFKEHVDRSGTDVQMNG 1033

Query: 641  SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 700
             KLF+LA   SS+  N       + +V+ KPL+   L +  + A G+  +  +   + PS
Sbjct: 1034 PKLFVLATPKSSNEHNELKSSGHVNNVLSKPLQLDALVSCFREAFGIEKRNQVI-IKKPS 1092

Query: 701  MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
             +LR+LL  + IL+VDDN VN++VA   LK+YGA V CV+ GK A  LL PPH FDACFM
Sbjct: 1093 -TLRNLLKEKHILVVDDNAVNIRVAEGALKKYGAIVTCVKCGKDAVALLNPPHNFDACFM 1151

Query: 761  DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
            D+QMPEMDG+EAT+ +R +E   N +I  GEVSIE   N  ++H PI AMTAD+IQ   E
Sbjct: 1152 DLQMPEMDGYEATRQVRAVECGVNAKITSGEVSIE--NNKIHWHTPIFAMTADLIQDMNE 1209

Query: 821  ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            ECL+ GMDGYV+KPFE EQLY  V+RFF
Sbjct: 1210 ECLKCGMDGYVAKPFEEEQLYSAVARFF 1237


>gi|357495343|ref|XP_003617960.1| Histidine kinase cytokinin receptor [Medicago truncatula]
 gi|355519295|gb|AET00919.1| Histidine kinase cytokinin receptor [Medicago truncatula]
          Length = 1269

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/870 (55%), Positives = 623/870 (71%), Gaps = 49/870 (5%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-----EPSPIEEEYAPVIFAQDTVSHV 63
            ++VL S+R  FEKQ GWTIK+M+T     V +      +P+PI++EYAPV+FAQ+TVSH+
Sbjct: 362  LKVLHSDRMHFEKQHGWTIKKMETENEALVQECIPENLDPAPIQDEYAPVVFAQETVSHI 421

Query: 64   ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
            +S+DM+SGKEDREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY  +LP +ATP +R
Sbjct: 422  VSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNYLGVVLTFAVYDSKLPPDATPEQR 481

Query: 124  IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV 183
            IEAT GYLG  +D+ SLV+KLLHQLAS+QTI VNVYD TN S PI+MYG++V D GL  +
Sbjct: 482  IEATVGYLGASYDVPSLVDKLLHQLASQQTIAVNVYDTTNASDPITMYGTDVLDTGLLHI 541

Query: 184  STLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDY 243
            S L+FGDP RKHEM CRFK   P+P  A   S+G+ VI  L+G+IF A +NRIAKVE+DY
Sbjct: 542  SGLDFGDPLRKHEMHCRFKHTPPFPWTAFWASVGVFVITFLLGYIFYAAINRIAKVEDDY 601

Query: 244  HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
              M ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD  Q D+ +TA  
Sbjct: 602  CQMRELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDDNQMDFAQTAHT 661

Query: 304  SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 363
            SGK L+S+I+EVL QAK+E+GKLELEAV+F+  AILD+VLSLFS KS +KG+EL+VY S+
Sbjct: 662  SGKDLISVISEVLYQAKIEAGKLELEAVAFHPHAILDEVLSLFSEKSDEKGIELSVYASN 721

Query: 364  RVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETEL------ 416
            +VPE +IGDP RFRQIITNL+GNS+KF   KGH+FV+++L  EV + + +   +      
Sbjct: 722  QVPEVVIGDPKRFRQIITNLVGNSLKFIHNKGHVFVSIHLANEVKNPLHIMDAVLRECLN 781

Query: 417  ------SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
                    + NTLSG+PV +R  SW+ F+  N         +  ++ I L+V+VEDTG G
Sbjct: 782  LNQDMSERTCNTLSGFPVGNRWKSWEKFQKLNL--------AHESETIQLLVTVEDTGIG 833

Query: 471  IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
            IP +AQSRIFTPFMQ   S SRT+GGTGIGLSISK LV  M GEIGFVS P IGSTF+FT
Sbjct: 834  IPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPEIGSTFSFT 893

Query: 531  AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 590
              F  G + S +   Q+  N P  ++SEFQG++ALV+D R IRA+V+RYH+QRLG+ V+V
Sbjct: 894  GNFRKGETESVDEKWQK--NNP--LASEFQGLRALVIDRRKIRAEVTRYHLQRLGMSVDV 949

Query: 591  VSD-QLQC--LSQIASGSKI--INMILVEQEVWEKDTSVSTLFV------NNLRKLGCGF 639
             S  Q  C  LS   + S +  + MIL++++ W+K++S+  L+       N ++     F
Sbjct: 950  NSSLQSACFSLSDTCNSSMLTQLAMILIDKDSWDKESSI--LYAIKKQGQNGVKGDSLNF 1007

Query: 640  QSKLFLLANSIS-SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 698
              K+FLLA  +S + R    + G+ I  V+MKPL  S+L    + ++G G K   R    
Sbjct: 1008 -PKIFLLATHLSPNERKELKSVGI-IDDVLMKPLWQSVLIRYYRESLGTGRKQIDRK--- 1062

Query: 699  PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
                L +LL+ ++IL+VDDN VN KVA   L++YGA V CV+ GK A ++L PPH FDAC
Sbjct: 1063 KVSQLENLLIHKRILVVDDNAVNRKVAEGVLRKYGAVVTCVDGGKAALKVLKPPHNFDAC 1122

Query: 759  FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
            FMD+QMPEMDGFE T+ IR ME+  N +I  GE   E + N+S +H+PILAMTADV QA+
Sbjct: 1123 FMDLQMPEMDGFEVTRRIRYMENEVNEKIACGEELAEMFGNISYWHIPILAMTADVTQAS 1182

Query: 819  YEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             EEC + GMD +VSKPFE EQLY  V+  F
Sbjct: 1183 NEECKKCGMDDFVSKPFEEEQLYTAVACVF 1212


>gi|302121695|gb|ADK92861.1| histidine kinase 1 [Hypericum perforatum]
          Length = 1199

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/863 (55%), Positives = 612/863 (70%), Gaps = 38/863 (4%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-----EPSPIEEEYAPVIFAQDTVSHV 63
            ++VL SERE+FEKQQGWTIK+M++ +   V        +P+P+++EYAPVI  Q+TVSH+
Sbjct: 349  VKVLHSEREQFEKQQGWTIKKMESEDQTLVQDCSPENLDPAPLQDEYAPVILTQETVSHI 408

Query: 64   ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
            +S+DM+SGK+DREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY  ELP +ATP ++
Sbjct: 409  VSIDMMSGKDDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTELPLDATPEQK 468

Query: 124  IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV 183
            IEA  GYLG  +D+ SLVEKLL QLASKQTI VNVYD TN S+ I MYGS+V D  L  V
Sbjct: 469  IEACVGYLGASYDVPSLVEKLLQQLASKQTIVVNVYDTTNASNAILMYGSDVIDTDLVHV 528

Query: 184  STLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDY 243
            S L+FGDP R+HEMRC FKQKA  P  AI+ S  + +I  LVG+IF A + RI +VE + 
Sbjct: 529  SNLDFGDPSRRHEMRCWFKQKASLPWTAINASAAVFIITVLVGYIFHAAIKRIVEVEAEC 588

Query: 244  HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
            H M++L  +AEAADVAKS+FLATVSHEIRTPMNGVLGML MLMDTELD +Q+DY +TA A
Sbjct: 589  HEMLKLTVRAEAADVAKSKFLATVSHEIRTPMNGVLGMLQMLMDTELDTSQEDYAKTAHA 648

Query: 304  SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE-LAVYIS 362
            SG+ L+SLI +VLDQAK+ESG+LELEAV F+L ++LD VLS+FSG+S +KG+E LAVY S
Sbjct: 649  SGRELISLIGDVLDQAKIESGRLELEAVPFDLHSVLDSVLSMFSGRSSEKGIEKLAVYAS 708

Query: 363  DRVPETLIGDPGRFRQIITNLMGNSIKFTEK--GHIFVTVYLVEEVV------------D 408
            + V E +IGDP RFRQII NL+GNSIKFT    GHIFVTV+LVEEV              
Sbjct: 709  NCVSEIVIGDPERFRQIIQNLVGNSIKFTRDNGGHIFVTVHLVEEVTGQLDTKDAVLVNG 768

Query: 409  SIEVETELSSS-KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 467
            S+ V+ + S+S   TLSGYPV +R  SW+ FK  N     +  K S  D++ ++V+VEDT
Sbjct: 769  SVPVDRDPSNSVCETLSGYPVVNRWKSWENFKKNN----INSMKES--DVVRVLVTVEDT 822

Query: 468  GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
            G GI  +AQSRIFTPF+Q   S SRT+GGTGIGLSISK LV  M GEIGFVS  NIGSTF
Sbjct: 823  GVGISPDAQSRIFTPFVQGDSSTSRTYGGTGIGLSISKCLVELMDGEIGFVSEANIGSTF 882

Query: 528  TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 587
            +FT     G S +    S   +  P+ +  EFQG ++L+VD R IRA+V++YH++RLG+ 
Sbjct: 883  SFTVSLKRGESRTLGTKSPLRD--PSLL--EFQGQRSLIVDNRRIRAEVTKYHLRRLGVH 938

Query: 588  VEVVSD-QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ-SKLFL 645
             ++V D +  C  +  +    + ++L++ EVW+K+   +   V N  K   G +  K+FL
Sbjct: 939  ADIVPDLKSACTYRYPAN---LALVLIDTEVWDKEAGSAFRSVINASKPNGGAEIPKVFL 995

Query: 646  LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH 705
            LAN   S           +  +++KPLRSS+LAA+ Q  +G G K  +   + PS +L +
Sbjct: 996  LANFTGSEERVELKSARLVDDIVIKPLRSSVLAAAFQETVGSGRKNQVHK-KTPS-ALGN 1053

Query: 706  LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 765
            L+ G++IL+VDDN VN +VA   LK+YGA V C   G +A ++L PPH+FDACFMD  MP
Sbjct: 1054 LVRGKQILVVDDNMVNRRVAEGALKKYGAIVTCANNGSEAVKMLEPPHRFDACFMDRHMP 1113

Query: 766  EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 825
            EMDG EAT+ IR ME   N RI  GEV +  + NV+ +H PILAMTADVIQ   EECLR 
Sbjct: 1114 EMDGLEATQRIRSMEELVNGRIASGEVPMVMFGNVAYWHTPILAMTADVIQGANEECLRC 1173

Query: 826  GMDGYVSKPFEAEQLYREVSRFF 848
            GMD +VSKPFE  QLY  ++RFF
Sbjct: 1174 GMDDFVSKPFEEAQLYNALARFF 1196


>gi|255573224|ref|XP_002527541.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
 gi|223533091|gb|EEF34850.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
          Length = 1011

 Score =  905 bits (2338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/877 (54%), Positives = 614/877 (70%), Gaps = 46/877 (5%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            RV+ SEREEFE Q GWTIK M+          EPSP+ +EYAPVIF+Q+TVS++ SLDM+
Sbjct: 147  RVVNSEREEFESQHGWTIKTMEK---------EPSPLRDEYAPVIFSQETVSYIESLDMM 197

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN+L ARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP N T ++RIEA+ G
Sbjct: 198  SGEEDRENILNARATGKAVLTSPFRLLNSHHLGVVLTFPVYKSKLPPNPTVSQRIEASAG 257

Query: 130  YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 187
            YLGG FD+ESLVE LL QLA  Q I VNVYD+TN S P+ MYG    D  + LV  S L+
Sbjct: 258  YLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNASDPLIMYGVQNQDGDMSLVHESKLD 317

Query: 188  FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
            FGDPFRKH+M CR+ +KAP    A++T+    VI  LVG+I     N I KVE+D+H M 
Sbjct: 318  FGDPFRKHQMICRYHEKAPTSWTALTTAFLFSVIGLLVGYILYGAANHIVKVEDDFHEMQ 377

Query: 248  ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+L  TQ+DY +TAQA GKA
Sbjct: 378  ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQACGKA 437

Query: 308  LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
            L++LINEVLD+AK+E+GKLELEAV F+LR+ILDDVLSLFS KS+ KG+ELAV++SD+VPE
Sbjct: 438  LIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGIELAVFVSDKVPE 497

Query: 368  TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV-------VDSI------EVET 414
             ++GDPGRFRQIITNL+GNS+KFTE+GHIFV V+L E          DS       +V  
Sbjct: 498  IVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLDENAKATAFAKADSCLNGGSSDVIV 557

Query: 415  ELSSSKNTLSGYPVADRCHSWKGFK------TFNQDGSTSPFKSSSA-DLINLIVSVEDT 467
              S    TLSG+  AD  + W+ FK       F  +GS +   ++ A + + L+VSVEDT
Sbjct: 558  SDSCQFKTLSGFEAADDRNGWEAFKHLVADEDFQSNGSLNVLTTNDACENVTLVVSVEDT 617

Query: 468  GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
            G GIPL AQ R+F PFMQ   S SR +GGTGIGLSISK LV  M G I FVS P +GSTF
Sbjct: 618  GIGIPLHAQDRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGHISFVSRPQVGSTF 677

Query: 528  TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 587
            +FTA FG      N+ N  +  N  + + S F+G+KA+VVD +P+RA V+ YH++RLGI 
Sbjct: 678  SFTAAFGR--CKKNKFNKMEKRNSED-LPSSFRGLKAIVVDGKPVRAAVTTYHLKRLGIL 734

Query: 588  VEVVSD-QLQCLSQIASG----SKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCGFQ- 640
             EV S  ++   +   +G    S   ++ILVE++ W   +   S++++   ++ G  F+ 
Sbjct: 735  AEVASSLKVAAFTCAKNGSLKSSAQPDIILVEKDSWISGEDGGSSVWLLERKQNGHVFKL 794

Query: 641  SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 700
             K+ LLA +ISS   N +       +VIMKPLR+SM+ A LQ+ MG+G K   +  ++P+
Sbjct: 795  PKMILLATNISSDEFNKAKAAGFADTVIMKPLRASMVGACLQQVMGMG-KTRPQGKDVPN 853

Query: 701  MS--LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
             S  L+ LL G+KIL+VDDN VN +VAA  LK++GA V C + GK A +LL  PH FDAC
Sbjct: 854  GSSFLQSLLYGKKILVVDDNMVNRRVAAGALKKFGANVECADSGKAALKLLQLPHSFDAC 913

Query: 759  FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
            FMDIQMPEMDGFEAT+ IR+ME   N +I    ++         +HVPILAMTADVI AT
Sbjct: 914  FMDIQMPEMDGFEATRRIRQMESQANEQINGQSMAEGGAARKGEWHVPILAMTADVIHAT 973

Query: 819  YEECLRSGMDGYVSKPFEAEQLYREVSRFF--PPIPD 853
            Y+ECL+SGMDGYVSKPFE E LY+ V++FF   PI D
Sbjct: 974  YDECLKSGMDGYVSKPFEEENLYQAVAKFFKAKPISD 1010


>gi|218184380|gb|EEC66807.1| hypothetical protein OsI_33219 [Oryza sativa Indica Group]
          Length = 942

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/874 (54%), Positives = 623/874 (71%), Gaps = 54/874 (6%)

Query: 9   IRVLRSEREEFEKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHV 63
           ++VL SERE FE++ GW IK+M+T + + VH     K +PSP+++EYAPVIF+Q+TV H+
Sbjct: 80  LKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYAPVIFSQETVKHI 139

Query: 64  ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
           IS+DM+SGKEDR+N+LR+RA+GKG LTAPF LLK+N LGV+LTF VYK +LP +ATP ER
Sbjct: 140 ISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLGVVLTFTVYKYDLPPDATPEER 199

Query: 124 IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNV--SDDGLW 181
           IEAT GYLG  FD+ SLVE+LL QLASKQ I V +YDITN ++P  MY S+V  SDD   
Sbjct: 200 IEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDITNHTYPTKMYDSDVIASDD--L 257

Query: 182 LVSTLNFGDPFRKHEMRCRFKQKA--PWPLLAISTSIGILVIASLVGHIFQATVNRIAKV 239
            +S ++FGDP RKH M CRFK     PW  + IS+++ I+V+  LVG+I  AT+N + + 
Sbjct: 258 HISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIVL--LVGYIIYATLNSLEEA 315

Query: 240 EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 299
           E++Y  M +LK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQ+D+V 
Sbjct: 316 EDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQRDFVV 375

Query: 300 TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 359
           TAQ SGK+L++LINEVLD AK+ESGK+ELEAV F++R ILD+V+SLFS KS  KG+ELAV
Sbjct: 376 TAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAV 435

Query: 360 YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS-- 417
            +SD+VP+ LIGDP RFRQIITNL+GNS+KFTE+GHIF+ V+L+EEV   +E   + S  
Sbjct: 436 LVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPE 495

Query: 418 ------SSK-----NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 466
                 +SK     NTLSG  VA+   + + F+ F          S + D +NL+V+VED
Sbjct: 496 NIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKD-------SSDAIDSVNLLVTVED 548

Query: 467 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
           TG GI  +AQ+RIFTPFMQ   S SRT+GGTGIGLSI+K LV  M GEIGFVS P + ST
Sbjct: 549 TGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGVSST 608

Query: 527 FTFTAVFGNGSSTSNEHNSQQMNNQ-PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
           F+FTA+F       N  +   +    P     +FQGM+ALVVD R  RA+V+ YH++RLG
Sbjct: 609 FSFTAIF-----KENRKDPGDIKRYCPEPTPPDFQGMRALVVDGRCTRAEVTMYHLRRLG 663

Query: 586 IQVEVVSDQLQCLSQI-----ASGSKIINMILVEQEVWEKDTSVSTL-FVNNLRKLGC-- 637
           IQ ++ +     LS +     +S    +NM+LV++E W +D+ ++    + +LR  G   
Sbjct: 664 IQCDLAATSESALSALLESCNSSVKSSLNMVLVDKEAWGEDSGLAFFRCLIDLRLKGTLK 723

Query: 638 GFQS--KLFLLANSISSSRANT-STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 694
            +Q+  K FLLA SI+ + ++     G S  + I KPLR S +AA L +A+GVG  G  R
Sbjct: 724 SWQTMPKFFLLAGSITPADSDCLRLAGYS--NSIRKPLRLSTVAACLSKALGVGLTG--R 779

Query: 695 NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
                S+ LR +L G+ IL+VDDN VN  VAA  LK+YGA V CV+ GK+A   L PPH+
Sbjct: 780 RSRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHK 839

Query: 755 FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
           FDACFMD+QMPEMDGFEAT+++R +E   N+ I+ GEVS E Y N +++HVPILAMTADV
Sbjct: 840 FDACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHWHVPILAMTADV 899

Query: 815 IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           IQAT+E C+  GMDGYV+KPFE +QLY  V+ F 
Sbjct: 900 IQATFEGCMECGMDGYVAKPFEEQQLYSAVAHFL 933


>gi|110331743|dbj|BAE97709.1| cytokinin receptor histidine kinase [Oryza sativa Japonica Group]
 gi|222612690|gb|EEE50822.1| hypothetical protein OsJ_31230 [Oryza sativa Japonica Group]
          Length = 942

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/874 (54%), Positives = 623/874 (71%), Gaps = 54/874 (6%)

Query: 9   IRVLRSEREEFEKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHV 63
           ++VL SERE FE++ GW IK+M+T + + VH     K +PSP+++EYAPVIF+Q+TV H+
Sbjct: 80  LKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYAPVIFSQETVKHI 139

Query: 64  ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
           IS+DM+SGKEDR+N+LR+RA+GKG LTAPF LLK+N LGV+LTF VYK +LP +ATP ER
Sbjct: 140 ISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLGVVLTFTVYKYDLPPDATPEER 199

Query: 124 IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNV--SDDGLW 181
           IEAT GYLG  FD+ SLVE+LL QLASKQ I V +YDITN ++P  MY S+V  SDD   
Sbjct: 200 IEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDITNHTYPTKMYDSDVIASDD--L 257

Query: 182 LVSTLNFGDPFRKHEMRCRFKQKA--PWPLLAISTSIGILVIASLVGHIFQATVNRIAKV 239
            +S ++FGDP RKH M CRFK     PW  + IS+++ I+V+  LVG+I  AT+N + + 
Sbjct: 258 HISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIVL--LVGYIIYATLNSLEEA 315

Query: 240 EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 299
           E++Y  M +LK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQ+D+V 
Sbjct: 316 EDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQRDFVV 375

Query: 300 TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 359
           TAQ SGK+L++LINEVLD AK+ESGK+ELEAV F++R ILD+V+SLFS KS  KG+ELAV
Sbjct: 376 TAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAV 435

Query: 360 YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS-- 417
            +SD+VP+ LIGDP RFRQIITNL+GNS+KFTE+GHIF+ V+L+EEV   +E   + S  
Sbjct: 436 LVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPE 495

Query: 418 ------SSK-----NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 466
                 +SK     NTLSG  VA+   + + F+ F          S + D +NL+V+VED
Sbjct: 496 NIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKD-------SSDAIDSVNLLVTVED 548

Query: 467 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
           TG GI  +AQ+RIFTPFMQ   S SRT+GGTGIGLSI+K LV  M GEIGFVS P + ST
Sbjct: 549 TGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGVSST 608

Query: 527 FTFTAVFGNGSSTSNEHNSQQMNNQ-PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
           F+FTA+F       N  +   +    P     +FQGM+ALVVD R  RA+V+ YH++RLG
Sbjct: 609 FSFTAIF-----KENRKDPGDIKRYCPEPTPPDFQGMRALVVDGRCARAEVTMYHLRRLG 663

Query: 586 IQVEVVSDQLQCLSQI-----ASGSKIINMILVEQEVWEKDTSVSTL-FVNNLRKLGC-- 637
           IQ ++ +     LS +     +S    +NM+LV++E W +D+ ++    + +LR  G   
Sbjct: 664 IQCDLAATSESALSALLESCNSSVKSSLNMVLVDKEAWGEDSGLAFFRCLIDLRLKGTLK 723

Query: 638 GFQS--KLFLLANSISSSRANT-STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 694
            +Q+  K FLLA SI+ + ++     G S  + I KPLR S +AA L +A+GVG  G  R
Sbjct: 724 SWQTMPKFFLLAGSITPADSDCLRLAGYS--NSIRKPLRLSTVAACLSKALGVGLTG--R 779

Query: 695 NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
                S+ LR +L G+ IL+VDDN VN  VAA  LK+YGA V CV+ GK+A   L PPH+
Sbjct: 780 RSRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHK 839

Query: 755 FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
           FDACFMD+QMPEMDGFEAT+++R +E   N+ I+ GEVS E Y N +++HVPILAMTADV
Sbjct: 840 FDACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHWHVPILAMTADV 899

Query: 815 IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           IQAT+E C+  GMDGYV+KPFE +QLY  V+ F 
Sbjct: 900 IQATFEGCMECGMDGYVAKPFEEQQLYSAVAHFL 933


>gi|118790684|tpd|FAA00249.1| TPA: histidine kinase [Oryza sativa Japonica Group]
          Length = 1187

 Score =  901 bits (2329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/874 (54%), Positives = 623/874 (71%), Gaps = 54/874 (6%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHV 63
            ++VL SERE FE++ GW IK+M+T + + VH     K +PSP+++EYAPVIF+Q+TV H+
Sbjct: 325  LKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYAPVIFSQETVKHI 384

Query: 64   ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
            IS+DM+SGKEDR+N+LR+RA+GKG LTAPF LLK+N LGV+LTF VYK +LP +ATP ER
Sbjct: 385  ISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLGVVLTFTVYKYDLPPDATPEER 444

Query: 124  IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNV--SDDGLW 181
            IEAT GYLG  FD+ SLVE+LL QLASKQ I V +YDITN ++P  MY S+V  SDD   
Sbjct: 445  IEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDITNHTYPTKMYDSDVIASDD--L 502

Query: 182  LVSTLNFGDPFRKHEMRCRFKQKA--PWPLLAISTSIGILVIASLVGHIFQATVNRIAKV 239
             +S ++FGDP RKH M CRFK     PW  + IS+++ I+V+  LVG+I  AT+N + + 
Sbjct: 503  HISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIVL--LVGYIIYATLNSLEEA 560

Query: 240  EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 299
            E++Y  M +LK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQ+D+V 
Sbjct: 561  EDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQRDFVV 620

Query: 300  TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 359
            TAQ SGK+L++LINEVLD AK+ESGK+ELEAV F++R ILD+V+SLFS KS  KG+ELAV
Sbjct: 621  TAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAV 680

Query: 360  YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS-- 417
             +SD+VP+ LIGDP RFRQIITNL+GNS+KFTE+GHIF+ V+L+EEV   +E   + S  
Sbjct: 681  LVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPE 740

Query: 418  ------SSK-----NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 466
                  +SK     NTLSG  VA+   + + F+ F          S + D +NL+V+VED
Sbjct: 741  NIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKD-------SSDAIDSVNLLVTVED 793

Query: 467  TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
            TG GI  +AQ+RIFTPFMQ   S SRT+GGTGIGLSI+K LV  M GEIGFVS P + ST
Sbjct: 794  TGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGVSST 853

Query: 527  FTFTAVFGNGSSTSNEHNSQQMNNQ-PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
            F+FTA+F       N  +   +    P     +FQGM+ALVVD R  RA+V+ YH++RLG
Sbjct: 854  FSFTAIF-----KENRKDPGDIKRYCPEPTPPDFQGMRALVVDGRCARAEVTMYHLRRLG 908

Query: 586  IQVEVVSDQLQCLSQI-----ASGSKIINMILVEQEVWEKDTSVSTL-FVNNLRKLGC-- 637
            IQ ++ +     LS +     +S    +NM+LV++E W +D+ ++    + +LR  G   
Sbjct: 909  IQCDLAATSESALSALLESCNSSVKSSLNMVLVDKEAWGEDSGLAFFRCLIDLRLKGTLK 968

Query: 638  GFQS--KLFLLANSISSSRANT-STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 694
             +Q+  K FLLA SI+ + ++     G S  + I KPLR S +AA L +A+GVG  G  R
Sbjct: 969  SWQTMPKFFLLAGSITPADSDCLRLAGYS--NSIRKPLRLSTVAACLSKALGVGLTG--R 1024

Query: 695  NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
                 S+ LR +L G+ IL+VDDN VN  VAA  LK+YGA V CV+ GK+A   L PPH+
Sbjct: 1025 RSRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHK 1084

Query: 755  FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
            FDACFMD+QMPEMDGFEAT+++R +E   N+ I+ GEVS E Y N +++HVPILAMTADV
Sbjct: 1085 FDACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHWHVPILAMTADV 1144

Query: 815  IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            IQAT+E C+  GMDGYV+KPFE +QLY  V+ F 
Sbjct: 1145 IQATFEGCMECGMDGYVAKPFEEQQLYSAVAHFL 1178


>gi|190148363|gb|ACE63264.1| cytokinin receptor 1A [Populus trichocarpa]
          Length = 1006

 Score =  901 bits (2328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/872 (55%), Positives = 619/872 (70%), Gaps = 46/872 (5%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV+ SER EFE+Q GWTIK M+          EPSPI +EYAPVIF+Q+TVS++ SLDM+
Sbjct: 140 RVIDSERHEFERQHGWTIKTMER---------EPSPIRDEYAPVIFSQETVSYIESLDMM 190

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP + T  +RIEAT G
Sbjct: 191 SGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPSPTVAQRIEATAG 250

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 187
           YLGG FDIESLVE LL QLA  Q I VNVYDITN S  + MYG    D  L L+  S L+
Sbjct: 251 YLGGAFDIESLVENLLGQLAGNQAILVNVYDITNSSDLLIMYGHQNLDGDLSLLHESKLD 310

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKH M CR+ +KAP    A+ST+    VI  LVG+I       I KVE+D+H M 
Sbjct: 311 FGDPFRKHLMTCRYHEKAPTSWTALSTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQ 370

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML +L+DT+L  TQ+DY +TAQ  GKA
Sbjct: 371 ELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLALLLDTDLSSTQRDYAQTAQVCGKA 430

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LINEVLD+AK+E+GKLELEAV F++R+ILDDVLSLFS KS++KG+ELAV++SD+VPE
Sbjct: 431 LIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGIELAVFVSDKVPE 490

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE--EVVDSIEVETELSSSKN---- 421
            ++GDPGRFRQIITNL+GNS+KFTE+GHIFV V+L E  + +   +V+T L+   N    
Sbjct: 491 IVVGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLYENAKAITDTKVDTCLNGGSNESVL 550

Query: 422 --------TLSGYPVADRCHSWKGFKTFNQ-----DGSTSPFKSSSA-DLINLIVSVEDT 467
                   TLSG   AD  +SW  FK F+      D S +   ++ A + + L+V VEDT
Sbjct: 551 TSGSQKFKTLSGCEAADDQNSWDVFKHFSDEDFRFDASINVMTNNEASEDVGLMVCVEDT 610

Query: 468 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
           G GIPL+AQ R+F PF+Q   S SR +GGTGIGLSISK LV  M G+I F+S P +GSTF
Sbjct: 611 GIGIPLKAQGRVFMPFVQADSSTSRQYGGTGIGLSISKCLVELMGGQINFISRPEVGSTF 670

Query: 528 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 587
           +FTAVF  G+   N  N+ +  N    + S F+G+KALVVD  P+RA V+RYH++RLGI 
Sbjct: 671 SFTAVF--GTCKKNTFNNMEKRN-AEELPSGFRGLKALVVDGNPVRATVTRYHLKRLGIL 727

Query: 588 VEVVSD-QLQCL-----SQIASGSKI-INMILVEQEVW-EKDTSVSTLFVNNLRKLGCGF 639
            EVVS  +L  +       + SG KI  ++ILVE++ W   +  VS+++  + ++ G  F
Sbjct: 728 AEVVSSLKLAAIGCGKNGSLTSGGKIHPDIILVEKDSWISGEDGVSSVWQLDSKQNGHAF 787

Query: 640 Q-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 698
           +  K+ LLA +I++S  + +       +VI+KPLRSSM+AA L + +G+G K + +   +
Sbjct: 788 KLPKMILLATNITNSEFDIAKGAGFADTVILKPLRSSMVAACLLQVLGMGKKRS-QGKGM 846

Query: 699 PSMS--LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 756
           P+ S  L+ LL G++IL+VDDN VN +VAA  LK++GA   C E GK+A +LL PPH +D
Sbjct: 847 PNGSSFLQSLLCGKRILVVDDNRVNRRVAAGALKKFGADAECAESGKEALKLLQPPHTYD 906

Query: 757 ACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 816
           ACFMDIQMPEMDGFEAT+ IR+ME   N ++    +  E       +H+PILAMTADVI 
Sbjct: 907 ACFMDIQMPEMDGFEATRRIRQMESQANEQMNGESMVEEGTARKVQWHIPILAMTADVIH 966

Query: 817 ATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           AT++ECL+SGMDGYVSKPFE E LY+ V+RFF
Sbjct: 967 ATHDECLKSGMDGYVSKPFEEENLYQAVARFF 998


>gi|449450139|ref|XP_004142821.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
 gi|449523071|ref|XP_004168548.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
          Length = 985

 Score =  898 bits (2320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/870 (54%), Positives = 604/870 (69%), Gaps = 53/870 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV+ SER+ FEKQ GW IK M         K EPSPI +EYAPVIF+Q+TVS++ SLDM+
Sbjct: 135 RVIHSERDIFEKQHGWMIKTM---------KREPSPIRDEYAPVIFSQETVSYIESLDMM 185

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT+PFRLL ++ LGV+LTF VYK +LPS  T  +RIEAT G
Sbjct: 186 SGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSKPTEEDRIEATAG 245

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 187
           Y+GG FD+ESLVE LL QLA  Q I VNVYD+TN S P+ MYG    D  L L+  S+L+
Sbjct: 246 YVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDGDLSLLHESSLD 305

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKH M CR++Q+AP    A++T+    VI  LVG+I       I KVE+D+H M 
Sbjct: 306 FGDPFRKHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHILKVEDDFHAMQ 365

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            LK +AEAAD+AKSQFLATVSHEIRTPMNG+LGML +L+DT+L  TQ+DY +TAQA GKA
Sbjct: 366 ILKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKA 425

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LINEVLD+AK+E+GKLELEAV F++R+ILDDVLSLFS KS+ KG+ELAV++SD+VPE
Sbjct: 426 LIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPE 485

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE--TELSSSK----- 420
            +IGDPGRFRQIITNL+GNS+KFTE+GHIFV V+L E    SI+ +    +S S      
Sbjct: 486 IVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAEHSKGSIDSKYVNGISDSDLFISG 545

Query: 421 ----NTLSGYPVADRCHSWKGFK--------TFNQDGSTSPFKSSSADLINLIVSVEDTG 468
                TLSG   AD  + W  FK          N   ++    +     + L+VSVEDTG
Sbjct: 546 GRDFQTLSGCEAADDQNGWDNFKHIIADEDFQLNATPNSMVVANEGCGHVTLMVSVEDTG 605

Query: 469 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 528
            GI L AQ+R+F PFMQ   S SR +GGTGIGLSISK LV  M G+I F+S P IGSTF+
Sbjct: 606 IGILLHAQNRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFS 665

Query: 529 FTAVFGNGSSTSNEHNSQQMNNQPNS--VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
           FTAVFG       + NS     +PNS  +   F+GMKA++VD + +RA V+RYH++RLGI
Sbjct: 666 FTAVFGKC-----KKNSINDLKKPNSEELPPSFRGMKAIIVDRKHVRASVTRYHLKRLGI 720

Query: 587 QVEVVS--DQLQCLSQ-----IASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639
           +VEV S  +    LS+     I   + + +MILVE++    D    T+   NL+  G  F
Sbjct: 721 KVEVTSSVNMAASLSRENGSTIPGNAILPDMILVEKDTLNSDEECGTIHQLNLKLNGNSF 780

Query: 640 Q-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 698
           +  KL LLA +I+++  + +       +VIMKPLR+SM+AA LQ+ +GV N+   R    
Sbjct: 781 KLPKLILLATNITTAELDKAKAVGFADTVIMKPLRASMVAACLQQVLGVKNQRRGRGVPN 840

Query: 699 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
            S  L+ LL G++ILIVDDN VN +VAA  LK++GA V C + GK A +LL  PH FDAC
Sbjct: 841 GSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQLPHNFDAC 900

Query: 759 FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
           FMDIQMPEMDGFEAT++IR ME+  N          E+Y     +H+PILAMTADVI AT
Sbjct: 901 FMDIQMPEMDGFEATRLIRMMENKENEG--------ESYAGEGKWHMPILAMTADVIHAT 952

Query: 819 YEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           Y+ECL+ GMDGYVSKPFE E LY+EV++FF
Sbjct: 953 YDECLKCGMDGYVSKPFEEENLYKEVAKFF 982


>gi|224101927|ref|XP_002312478.1| histidine kinase cytokinin receptor [Populus trichocarpa]
 gi|222852298|gb|EEE89845.1| histidine kinase cytokinin receptor [Populus trichocarpa]
          Length = 1007

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/873 (54%), Positives = 618/873 (70%), Gaps = 47/873 (5%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV+ SER EFE+Q GWTIK M+          EPSPI +EYAPVIF+Q+TVS++ SLDM+
Sbjct: 140 RVIDSERHEFERQHGWTIKTMER---------EPSPIRDEYAPVIFSQETVSYIESLDMM 190

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP + T  +RIEAT G
Sbjct: 191 SGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPSPTVAQRIEATAG 250

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 187
           YLGG FDIESLVE LL QLA  Q I VNVYDITN S  + MYG    D  L L+  S L+
Sbjct: 251 YLGGAFDIESLVENLLGQLAGNQAILVNVYDITNSSDLLIMYGHQNLDGDLSLLHESKLD 310

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKH M CR+ +KAP    A+ST+    VI  LVG+I       I KVE+D+H M 
Sbjct: 311 FGDPFRKHLMTCRYHEKAPTSWTALSTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQ 370

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML +L+DT+L  TQ+DY +TAQ  GKA
Sbjct: 371 ELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLALLLDTDLSSTQRDYAQTAQVCGKA 430

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LINEVLD+AK+E+GKLELEAV F++R+ILDDVLSLFS KS++KG+ELAV++SD+VPE
Sbjct: 431 LIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGIELAVFVSDKVPE 490

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE--EVVDSIEVETELSSSKN---- 421
            ++GDPGRFRQIITNL+GNS+KFTE+GHIFV V+L E  + +   +V+T L+   N    
Sbjct: 491 IVVGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLYENAKAITDTKVDTCLNGGSNESVL 550

Query: 422 --------TLSGYPVADRCHSWKGFKTFNQ-----DGSTSPFKSSSA-DLINLIVSVEDT 467
                   TLSG   AD  +SW  FK F+      D S +   ++ A + + L+V VEDT
Sbjct: 551 TSGSQKFKTLSGCEAADDQNSWDVFKHFSDEDFRFDASINVMTNNEASEDVGLMVCVEDT 610

Query: 468 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
           G GIPL+AQ R+F PF+Q   S SR +GGTGIGLSISK LV  M G+I F+S P +GSTF
Sbjct: 611 GIGIPLKAQGRVFMPFVQADSSTSRQYGGTGIGLSISKCLVELMGGQINFISRPEVGSTF 670

Query: 528 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 587
           +FTAVF  G+   N  N+ +  N    + S F+G+KALVVD  P+RA V+RYH++RLGI 
Sbjct: 671 SFTAVF--GTCKKNTFNNMEKRN-AEELPSGFRGLKALVVDGNPVRATVTRYHLKRLGIL 727

Query: 588 VEVVSD-QLQCL-----SQIASGSKII--NMILVEQEVW-EKDTSVSTLFVNNLRKLGCG 638
            EVVS  +L  +       + SG   I  ++ILVE++ W   +  VS+++  + ++ G  
Sbjct: 728 AEVVSSLKLAAIGCGKNGSLTSGRGKIHPDIILVEKDSWISGEDGVSSVWQLDSKQNGHA 787

Query: 639 FQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 697
           F+  K+ LLA +I++S  + +       +VI+KPLRSSM+AA L + +G+G K + +   
Sbjct: 788 FKLPKMILLATNITNSEFDIAKGAGFADTVILKPLRSSMVAACLLQVLGMGKKRS-QGKG 846

Query: 698 LPSMS--LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF 755
           +P+ S  L+ LL G++IL+VDDN VN +VAA  LK++GA   C E GK+A +LL PPH +
Sbjct: 847 MPNGSSFLQSLLCGKRILVVDDNRVNRRVAAGALKKFGADAECAESGKEALKLLQPPHTY 906

Query: 756 DACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815
           DACFMDIQMPEMDGFEAT+ IR+ME   N ++    +  E       +H+PILAMTADVI
Sbjct: 907 DACFMDIQMPEMDGFEATRRIRQMESQANEQMNGESMVEEGTARKVQWHIPILAMTADVI 966

Query: 816 QATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            AT++ECL+SGMDGYVSKPFE E LY+ V+RFF
Sbjct: 967 HATHDECLKSGMDGYVSKPFEEENLYQAVARFF 999


>gi|359473065|ref|XP_002285117.2| PREDICTED: histidine kinase 4-like [Vitis vinifera]
          Length = 1003

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/880 (54%), Positives = 606/880 (68%), Gaps = 54/880 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV  SERE FEKQ GWTIK M         K E SPI +EYAPVIF+Q+TVS++ SLDM+
Sbjct: 137 RVAYSERERFEKQHGWTIKTM---------KREASPIRDEYAPVIFSQETVSYIESLDMM 187

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP N T  +RIEAT G
Sbjct: 188 SGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTVEQRIEATAG 247

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 187
           YLGG FD+ESLVE LL QLA  Q I VNVYD+TN S P+ MYG    D  + L+  S L+
Sbjct: 248 YLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGRQYQDVDMSLLHESKLD 307

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKH+M CR+ QK P    +++T+    VI  LVG+I       I KVE+D+H M 
Sbjct: 308 FGDPFRKHQMICRYHQKEPTSWTSLTTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQ 367

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+L  TQ+DY +TAQA GKA
Sbjct: 368 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQACGKA 427

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LINEVLD+AK+E+GKLELEAV FNLR+ILDDVLSLFS KS+ KG+ELAV++SD+VPE
Sbjct: 428 LITLINEVLDRAKIEAGKLELEAVPFNLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPE 487

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS---------- 417
            +IGDPGRFRQIITNL+GNS+KFTE+GHIFV V+L E     ++ + E            
Sbjct: 488 MVIGDPGRFRQIITNLVGNSVKFTERGHIFVQVHLAEHTKALMDAKAETCLNGGSDEGLV 547

Query: 418 ----SSKNTLSGYPVADRCHSWKGFK--TFNQD-----GSTSPFKSSSADLINLIVSVED 466
               S   TLSG   AD  +SW  FK   F++D      +     S +++ + L+VSVED
Sbjct: 548 SNGGSQFRTLSGCEAADDQNSWDRFKHLIFDEDLRSDASNIMTVTSEASEKVTLMVSVED 607

Query: 467 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
           TG GIPL AQ R+FTPFMQ   S SR +GGTGIGLSISK LV  M G+I F+S P IGST
Sbjct: 608 TGIGIPLRAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIKFISRPQIGST 667

Query: 527 FTFTAVFG----NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 582
           F+FTA FG    N  S   + NS       + +   F+G+KA+VVD RP+RA V++YH++
Sbjct: 668 FSFTADFGRCKKNALSDLKKSNS-------DDLPIGFRGLKAIVVDGRPVRAIVTKYHLK 720

Query: 583 RLGIQVEVVSDQLQCLS------QIASGS-KIINMILVEQEVW--EKDTSVSTLFVNNLR 633
           RLGI VEV +   + ++       + SGS    +MILVE++ W  E+D  ++   ++  +
Sbjct: 721 RLGILVEVANSIKKAVAITGKNGSLTSGSGNQPDMILVEKDSWISEEDADLNLRLLDWKQ 780

Query: 634 KLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI 693
                   K+ LLA +ISS+  + +       +VIMKPLR+SM+AA LQ+ +G+G K   
Sbjct: 781 NRHTLKLPKMILLATNISSAEFDKAKAAGFADTVIMKPLRASMVAACLQQVLGLGKKRQQ 840

Query: 694 -RNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 752
            ++    S  L+ LL G+KIL+VDDN VN +VAA  LK++GA V C E GK A +LL  P
Sbjct: 841 GKDMLNGSAFLQSLLCGKKILVVDDNKVNRRVAAGALKKFGADVECAESGKAALQLLQLP 900

Query: 753 HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA 812
           H FDACFMDIQMPEMDGFEAT+ IR +E   N ++  G  + E       +HVPILAMTA
Sbjct: 901 HNFDACFMDIQMPEMDGFEATRRIRLIESKANEQM-NGGCTPEGAATKGEWHVPILAMTA 959

Query: 813 DVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
           DVI ATY++CL+ GMDGYVSKPFE E LY+ V++FF   P
Sbjct: 960 DVIHATYDKCLKCGMDGYVSKPFEEENLYQAVAKFFKSKP 999


>gi|162461250|ref|NP_001104867.1| histidine kinase3 [Zea mays]
 gi|38347688|dbj|BAD01585.1| histidine kinase 3 [Zea mays]
          Length = 1201

 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/874 (53%), Positives = 608/874 (69%), Gaps = 53/874 (6%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHV 63
            ++VL +ER++FE+Q GW IK+M+  + + VH     K EPSP+++EYAPVIF+Q+TV H+
Sbjct: 341  LKVLHNERQQFEEQHGWKIKKMEDGDQSLVHDYNLEKLEPSPVQDEYAPVIFSQETVKHI 400

Query: 64   ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
            IS+DM+SGKED +N+LR+R++GKG LT+PF+LLK+N LGV+LTF VYK +LP NATP ER
Sbjct: 401  ISVDMMSGKEDHDNILRSRSTGKGALTSPFKLLKSNHLGVVLTFTVYKYDLPPNATPQER 460

Query: 124  IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV 183
            I AT GYLG  FD+ SLV+KLL QLASK+ I VN+YD TN + PI MYGS+ +  G   +
Sbjct: 461  IHATLGYLGASFDVPSLVDKLLEQLASKRKIVVNLYDTTNHTSPIEMYGSDFTPSGDLHI 520

Query: 184  STLNFGDPFRKHEMRCRFKQKA--PWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
            S+++FGDP RKHEM CRFK +   PW  + IST++ I+V+  LVGHI  AT+N + K E 
Sbjct: 521  SSIDFGDPTRKHEMHCRFKHEPSLPWSAIIISTAVAIIVL--LVGHIIYATLNSLEKAEH 578

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            DY  M ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQQD+V TA
Sbjct: 579  DYRVMRELKGQAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQQDFVVTA 638

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
            Q SGK L++LINEVLD AK+ESG++ELEAV F++R ILD+V+SLF  KSQ KG+ELAV +
Sbjct: 639  QESGKVLINLINEVLDLAKIESGRIELEAVPFDVRDILDNVISLFYEKSQAKGIELAVLV 698

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS------------ 409
            SD+VP+ LIGDP RFRQIITNL+GNS+KFTE+GHIFV V+LV+E+               
Sbjct: 699  SDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFVQVHLVKELSRKGNNFCDVSAHNR 758

Query: 410  -IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSA--DLINLIVSVED 466
             I  +++ S   NTLSG  VAD   SW+  + F        FK+S+   D I L V VED
Sbjct: 759  EILYDSDNSMLWNTLSGLEVAD---SWRSLENFTM------FKNSNGETDTIRLAVRVED 809

Query: 467  TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
            TG GI  +AQ RIFTPFMQ   S SRT+GGTGIGLSI+K LV  M GEIGF S   +GST
Sbjct: 810  TGIGITKDAQMRIFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSGVGST 869

Query: 527  FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
            F+FTA+F        +   ++  ++P  +  +FQGM+AL++D R  RA+V+ YH++RLGI
Sbjct: 870  FSFTAIFKENRGCPGD--MKRYYSEPTPL--DFQGMRALIIDGRSARAEVTMYHLRRLGI 925

Query: 587  QVEVVSD------QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL--FVNNLRKLGCG 638
            Q  +V+           +    S     +M+LV+ E W K + ++    FV+   K    
Sbjct: 926  QCSLVATSESESASSALMKACTSSKNNPDMVLVDTEAWGKGSGLAFYHRFVDCQLKGAHK 985

Query: 639  FQS---KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG-NKGNIR 694
            F     K  LL +SIS   ++           I KPLR S + A L++ +GVG  +   R
Sbjct: 986  FSQPMPKTILLGSSISPVESDY-LRLTGFGDCIRKPLRLSTIVACLRKTLGVGVTRQQSR 1044

Query: 695  NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
            +    S+ L+ +L G++IL+VDDN VN KVAA  LK+YG+ V CV+ G  A ++L PPH 
Sbjct: 1045 D---QSLVLQSVLTGKQILVVDDNAVNRKVAAGSLKKYGSTVTCVDSGSDAIDMLKPPHT 1101

Query: 755  FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
            FDACFMD+QMPEMDGFEAT++IR +E   N+ I  GE+S   Y N +++HVPILAMTADV
Sbjct: 1102 FDACFMDVQMPEMDGFEATRLIRSIEKKINDMIMMGEISANNYGNKAHWHVPILAMTADV 1161

Query: 815  IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            IQAT+E+C++ GMDGYVSKPFE +QLY  V+ F 
Sbjct: 1162 IQATFEKCMQCGMDGYVSKPFEEQQLYSAVAHFL 1195


>gi|38347753|dbj|BAD01586.1| histidine kinase 3 [Zea mays]
          Length = 1049

 Score =  888 bits (2295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/874 (53%), Positives = 608/874 (69%), Gaps = 53/874 (6%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHV 63
            ++VL +ER++FE+Q GW IK+M+  + + VH     K EPSP+++EYAPVIF+Q+TV H+
Sbjct: 189  LKVLHNERQQFEEQHGWKIKKMEDGDQSLVHDYNLEKLEPSPVQDEYAPVIFSQETVKHI 248

Query: 64   ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
            IS+DM+SGKED +N+LR+R++GKG LT+PF+LLK+N LGV+LTF VYK +LP NATP ER
Sbjct: 249  ISVDMMSGKEDHDNILRSRSTGKGALTSPFKLLKSNHLGVVLTFTVYKYDLPPNATPQER 308

Query: 124  IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV 183
            I AT GYLG  FD+ SLV+KLL QLASK+ I VN+YD TN + PI MYGS+ +  G   +
Sbjct: 309  IHATLGYLGASFDVPSLVDKLLEQLASKRKIVVNLYDTTNHTSPIEMYGSDFTPSGDLHI 368

Query: 184  STLNFGDPFRKHEMRCRFKQKA--PWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
            S+++FGDP RKHEM CRFK +   PW  + IST++ I+V+  LVGHI  AT+N + K E 
Sbjct: 369  SSIDFGDPTRKHEMHCRFKHEPSLPWSAIIISTAVAIIVL--LVGHIIYATLNSLEKAEH 426

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            DY  M ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQQD+V TA
Sbjct: 427  DYRVMRELKGQAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQQDFVVTA 486

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
            Q SGK L++LINEVLD AK+ESG++ELEAV F++R ILD+V+SLF  KSQ KG+ELAV +
Sbjct: 487  QESGKVLINLINEVLDLAKIESGRIELEAVPFDVRDILDNVISLFYEKSQAKGIELAVLV 546

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS------------ 409
            SD+VP+ LIGDP RFRQIITNL+GNS+KFTE+GHIFV V+LV+E+               
Sbjct: 547  SDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFVQVHLVKELSRKGNNFCDVSAHNR 606

Query: 410  -IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSA--DLINLIVSVED 466
             I  +++ S   NTLSG  VAD   SW+  + F        FK+S+   D I L V VED
Sbjct: 607  EILYDSDNSMLWNTLSGLEVAD---SWRSLENFTM------FKNSNGETDTIRLAVRVED 657

Query: 467  TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
            TG GI  +AQ RIFTPFMQ   S SRT+GGTGIGLSI+K LV  M GEIGF S   +GST
Sbjct: 658  TGIGITKDAQMRIFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSGVGST 717

Query: 527  FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
            F+FTA+F        +   ++  ++P  +  +FQGM+AL++D R  RA+V+ YH++RLGI
Sbjct: 718  FSFTAIFKENRGCPGD--MKRYYSEPTPL--DFQGMRALIIDGRSARAEVTMYHLRRLGI 773

Query: 587  QVEVVSD------QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL--FVNNLRKLGCG 638
            Q  +V+           +    S     +M+LV+ E W K + ++    FV+   K    
Sbjct: 774  QCSLVATSESESASSALMKACTSSKNNPDMVLVDTEAWGKGSGLAFYHRFVDCQLKGAHK 833

Query: 639  FQS---KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG-NKGNIR 694
            F     K  LL +SIS   ++           I KPLR S + A L++ +GVG  +   R
Sbjct: 834  FSQPMPKTILLGSSISPVESDY-LRLTGFGDCIRKPLRLSTIVACLRKTLGVGVTRQQSR 892

Query: 695  NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
            +    S+ L+ +L G++IL+VDDN VN KVAA  LK+YG+ V CV+ G  A ++L PPH 
Sbjct: 893  D---QSLVLQSVLTGKQILVVDDNAVNRKVAAGSLKKYGSTVTCVDSGSDAIDMLKPPHT 949

Query: 755  FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
            FDACFMD+QMPEMDGFEAT++IR +E   N+ I  GE+S   Y N +++HVPILAMTADV
Sbjct: 950  FDACFMDVQMPEMDGFEATRLIRSIEKKINDMIMMGEISANNYGNKAHWHVPILAMTADV 1009

Query: 815  IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            IQAT+E+C++ GMDGYVSKPFE +QLY  V+ F 
Sbjct: 1010 IQATFEKCMQCGMDGYVSKPFEEQQLYSAVAHFL 1043


>gi|224108221|ref|XP_002314765.1| histidine kinase cytokinin receptor [Populus trichocarpa]
 gi|190148365|gb|ACE63265.1| cytokinin receptor 1B [Populus trichocarpa]
 gi|222863805|gb|EEF00936.1| histidine kinase cytokinin receptor [Populus trichocarpa]
          Length = 1006

 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/875 (54%), Positives = 619/875 (70%), Gaps = 52/875 (5%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV+ SER EFE+Q GWTIK M+          EPSPI +EYAPVIF+Q+TVS++ SLDM+
Sbjct: 140 RVVNSERLEFERQHGWTIKTMER---------EPSPIRDEYAPVIFSQETVSYIESLDMM 190

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARASGK VLT PFRLL ++ LGV+LTF VYK +LP + T  +RIEAT G
Sbjct: 191 SGEEDRENILRARASGKAVLTGPFRLLGSHHLGVVLTFPVYKSKLPPSPTVAQRIEATAG 250

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 187
           YLGG FD+ESLVE LL QLA  Q I VNVYDITN S  + MYG    D  + L+  S L+
Sbjct: 251 YLGGAFDVESLVENLLGQLAGNQAILVNVYDITNSSDLLIMYGHQNQDGDMSLLHESKLD 310

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFR+H M CR+ +KAP    A++T+    VI  LVG+I       I KVE+D+H M 
Sbjct: 311 FGDPFRRHLMTCRYHEKAPTSWTALTTTFLFFVIGLLVGYILYEAAIHIVKVEDDFHEMQ 370

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           +LK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+L  TQ+DY +TAQ  GKA
Sbjct: 371 DLKVQAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQVCGKA 430

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LINEVLD+AK+E+GKLELEAV F++R+I+DDVLSLFS KS++KG+ELAV++SD+VPE
Sbjct: 431 LIALINEVLDRAKIEAGKLELEAVPFHIRSIVDDVLSLFSEKSRNKGIELAVFVSDKVPE 490

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE------------ 415
            ++GDPGRFRQIITNL+GNS+KFTE+GH FV V+L E    + + + +            
Sbjct: 491 IVVGDPGRFRQIITNLVGNSVKFTERGHTFVKVHLYEHAKATTDTKADTCLIGGSNESVL 550

Query: 416 LSSSK--NTLSGYPVADRCHSWKGFK-----TFNQDGSTSPFKSSSA-DLINLIVSVEDT 467
           +S S+   TLSG   AD  +SW  FK      F  D S +   S+ A + I L+V VEDT
Sbjct: 551 ISGSQKFKTLSGCEAADDQNSWDVFKHLSDEDFRFDASINVMTSNEASENITLMVCVEDT 610

Query: 468 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
           G GIPL+AQSR+F PF+Q   S SR +GGTGIGLSISK LV  M G+I F+S P +GSTF
Sbjct: 611 GIGIPLKAQSRVFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGQISFISRPEVGSTF 670

Query: 528 TFTAVFGNGSSTSNEHNSQQMNNQ-PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
           +FTAVF    ST  ++   +M  +    + S F+G+KALVVD +P+RA V+RYH++RLGI
Sbjct: 671 SFTAVF----STCKKNAFTKMEKRNAEDLPSGFRGLKALVVDGKPVRAAVTRYHLKRLGI 726

Query: 587 QVEVVSDQLQCLS-------QIASGSKII-NMILVEQEVW-EKDTSVSTLFVNNLRKLGC 637
             EVVS+ L+  +        + SGSKI  +MILVE++ W   +  VS ++  + ++ G 
Sbjct: 727 LAEVVSN-LKVAAGSCGKNGSLTSGSKIQPDMILVEKDTWISGEDGVSNVWKLDWKQNGH 785

Query: 638 GFQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW 696
            F+  K+ LLA +I++S  + +       +VIMKPLR+SM+AA L + +G+G K + +  
Sbjct: 786 AFKFPKMILLATNITNSEFDKAKAAGFADTVIMKPLRASMVAACLLQVLGMGKKRS-QGK 844

Query: 697 ELPSMS--LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
            +P+ S  L+ LL G+KIL+VDDN VN +VAA  LK++GA V C + GK+A +LL  PH 
Sbjct: 845 CMPNGSSFLQSLLCGKKILVVDDNRVNRRVAAGALKKFGADVECADSGKEALKLLQLPHT 904

Query: 755 FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIE-AYENVSNFHVPILAMTAD 813
           FDACFMDIQMPEMDGFEAT+ IR+ME   N ++  GE  +E        +H+PILAMTAD
Sbjct: 905 FDACFMDIQMPEMDGFEATRRIRQMESQANEQM-NGESMVEGGTARKGQWHIPILAMTAD 963

Query: 814 VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           VI AT++ECL+ GMDGYVSKPFE E LY+ V+RFF
Sbjct: 964 VIHATHDECLKCGMDGYVSKPFEEENLYQAVARFF 998


>gi|413934338|gb|AFW68889.1| putative histidine kinase family protein [Zea mays]
          Length = 1201

 Score =  884 bits (2285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/874 (53%), Positives = 608/874 (69%), Gaps = 53/874 (6%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHV 63
            ++VL +ER++FE+Q GW IK+M+  + + VH     K EPSP+++EYAPVIF+Q+TV H+
Sbjct: 341  LKVLHNERQQFEEQHGWKIKKMEDGDQSLVHDYNLEKLEPSPVQDEYAPVIFSQETVKHI 400

Query: 64   ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
            IS+DM+SGKED +N+LR+ ++GKG LT+PF+LLK+N LGV+LTF VYK +LP NATP ER
Sbjct: 401  ISVDMMSGKEDHDNILRSWSTGKGALTSPFKLLKSNHLGVVLTFTVYKYDLPPNATPQER 460

Query: 124  IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV 183
            I AT GYLG  FD+ SLV+KLL QLASK+ I VN+YD TN + PI MYGS+ +  G   +
Sbjct: 461  IHATLGYLGASFDVPSLVDKLLEQLASKRKIVVNLYDTTNHTSPIEMYGSDFTPSGDLHI 520

Query: 184  STLNFGDPFRKHEMRCRFKQKA--PWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEE 241
            S+++FGDP RKHEM CRFK +   PW  + IST++ I+V+  LVGHI  AT+N + K E 
Sbjct: 521  SSIDFGDPTRKHEMHCRFKHEPSLPWSAIIISTAVAIIVL--LVGHIIYATLNSLEKAEH 578

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            DY  M ELK +AEAAD+AKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQQD+V TA
Sbjct: 579  DYRVMRELKGQAEAADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQQDFVVTA 638

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
            Q SGK L++LINEVLD AK+ESG++ELEAV F++R ILD+V+SLF  KSQ KG+ELAV +
Sbjct: 639  QESGKVLINLINEVLDLAKIESGRIELEAVPFDVRDILDNVISLFYDKSQAKGIELAVLV 698

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV-------VD------ 408
            SD+VP+ LIGDP RFRQIITNL+GNS+KFTE+GHIFV V+LV+E+        D      
Sbjct: 699  SDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFVQVHLVKELNRKGNNFCDVSAHNR 758

Query: 409  SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSA--DLINLIVSVED 466
             I  +++ S   NTLSG  VAD   SW+  + F        FK+S+   D I L V VED
Sbjct: 759  EILYDSDNSMLWNTLSGLEVAD---SWRSLENFTM------FKNSNGETDTIRLAVRVED 809

Query: 467  TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
            TG GI  +AQ RIFTPFMQ   S SRT+GGTGIGLSI+K LV  M GEIGF S   +GST
Sbjct: 810  TGIGITKDAQMRIFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSGVGST 869

Query: 527  FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
            F+FTA+F        +   ++  ++P  +  +FQGM+AL++D R  RA+V+ YH++RLGI
Sbjct: 870  FSFTAIFKENRGCPGD--MKRYYSEPTPL--DFQGMRALIIDGRSARAEVTMYHLRRLGI 925

Query: 587  QVEVVSD------QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL--FVNNLRKLGCG 638
            Q  +V+           +    S     +M+LV+ E W K + ++    FV+   K    
Sbjct: 926  QCSLVATSESESASSALMKACTSSKNNPDMVLVDTEAWGKGSGLAFYHRFVDCQLKGAHK 985

Query: 639  FQS---KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG-NKGNIR 694
            F     K  LL +SIS   ++           I KPLR S + A L++ +GVG  +   R
Sbjct: 986  FSQPMPKTILLGSSISPVESDY-LRLTGFGDCIRKPLRLSTIVACLRKTLGVGVTRQQSR 1044

Query: 695  NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
            +    S+ L+ +L G++IL+VDDN VN KVAA  LK+YG+ V CV+ G  A ++L PPH 
Sbjct: 1045 D---QSLVLQSVLTGKQILVVDDNAVNRKVAAGSLKKYGSKVTCVDSGSDAIDMLKPPHT 1101

Query: 755  FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
            FDACFMD+QMPEMDGFEAT++IR +E   N+ I  GE+S   Y N +++HVPILAMTADV
Sbjct: 1102 FDACFMDVQMPEMDGFEATRLIRSIEKKINDMIMMGEISANNYGNKAHWHVPILAMTADV 1161

Query: 815  IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            IQAT+E+C++ GMDGYVSKPFE +QLY  V+ F 
Sbjct: 1162 IQATFEKCMQCGMDGYVSKPFEEQQLYFAVAHFL 1195


>gi|449445312|ref|XP_004140417.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
          Length = 1004

 Score =  879 bits (2272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/879 (53%), Positives = 610/879 (69%), Gaps = 48/879 (5%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            RV+  ERE+FEKQ GWTIK M+          EPSPI++EYAPVIF+Q+TVS++ SLDM+
Sbjct: 138  RVVHFEREKFEKQHGWTIKTMER---------EPSPIKDEYAPVIFSQETVSYIESLDMM 188

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN+LR+R +GK VLT+PFRLL ++ LGV+LT  VYK +LP N T +ER  AT G
Sbjct: 189  SGEEDRENILRSRETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPLNPTMDERTRATAG 248

Query: 130  YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 187
            YLGG FD+ESLVE LL QLA  Q I VNVYD+TN S P+ MYG    D  + L   S L+
Sbjct: 249  YLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNYSDPLVMYGHQYEDGDMSLSHESKLD 308

Query: 188  FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
            FGDPFRKH+M CR+ QKAP    A++T+    VI  LVG+I       I KVE+D+H M 
Sbjct: 309  FGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQ 368

Query: 248  ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            ELK +AEAAD+AKSQFLATVSHEIRTPMNG+LGML +L+DTEL  TQ+DY +TAQA GKA
Sbjct: 369  ELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKA 428

Query: 308  LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
            L++LINEVLD+AK+E+GKLELEAV F+LR ILDDVLSLFS KS+ KGVELAV++SD+VPE
Sbjct: 429  LIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPE 488

Query: 368  TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN------ 421
             ++GDPGRFRQ+ITNL+GNS+KFTE GHIFV V L E+ + S  +++E   + N      
Sbjct: 489  IVMGDPGRFRQVITNLVGNSVKFTEHGHIFVKVQLAEQSMVSTNIKSETHVNGNSEDGAS 548

Query: 422  -------TLSGYPVADRCHSWKGFK-----TFNQDGSTSPFKSSS-ADLINLIVSVEDTG 468
                   TLSG+  AD  +SW  FK      F  +GS++   ++  +D++ +++SVEDTG
Sbjct: 549  HNKHQFETLSGFEAADNQNSWDTFKHLANEEFQPNGSSNLMATNEISDIVTVMISVEDTG 608

Query: 469  QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 528
             GIPL AQ R+F  FMQ   S SR +GGTGIGL ISK LV  M G+I FVS P +GSTF+
Sbjct: 609  IGIPLSAQGRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQINFVSKPQVGSTFS 668

Query: 529  FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 588
            FTAVFG     +   N ++ N +   + S F+G+KA+VVD +P+RA V++YH++RLGI V
Sbjct: 669  FTAVFGRCEKKATV-NIKKSNLE--ELPSAFRGLKAVVVDGKPVRAAVTKYHLKRLGILV 725

Query: 589  EVVSD-----QLQCLSQIASGSKII--NMILVEQEVW---EKDTSVSTLFVNNLRKLGCG 638
            EV S       L   +     S I+  ++IL+E++++   E+  S + L   + ++ G  
Sbjct: 726  EVASSVKMAAALWGKNGSVRSSNILQPDVILLEKDIFISNEECGSSNLLHQLDWKQNGHT 785

Query: 639  FQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI-RNW 696
             +  KL LLA  +S+   + + +     ++IMKPLR+SM+ A LQ+ +G G K  + ++ 
Sbjct: 786  LKLPKLILLATCMSTVEFDKAKEMGFSDTLIMKPLRASMIGACLQQVLGSGKKRQLGKDM 845

Query: 697  ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 756
               S  L+ LL G+KIL+VDDN VN +VAA  LK++GA V CVE GK A  LL  PH FD
Sbjct: 846  ANGSNFLKGLLCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGKAALALLQLPHSFD 905

Query: 757  ACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 816
            ACFMDIQMPEMDGFEAT+ IR ME   N  + R E + +       +HVPILAMTADVI 
Sbjct: 906  ACFMDIQMPEMDGFEATRRIRMMESKENEVLIR-ESNGKENARKDEWHVPILAMTADVIH 964

Query: 817  ATYEECLRSGMDGYVSKPFEAEQLYREVSRFF--PPIPD 853
            ATY+ECL+ GMDGYVSKPFE E LY+ V++FF   PI D
Sbjct: 965  ATYDECLKCGMDGYVSKPFEEENLYQAVAKFFNTKPITD 1003


>gi|13359155|dbj|BAB33310.1| cytokinin receptor CRE1a [Arabidopsis thaliana]
          Length = 1057

 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/872 (54%), Positives = 598/872 (68%), Gaps = 54/872 (6%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            +V+  ERE FE+Q  W IK MD        + EPSP+ +EYAPVIF+QD+VS++ SLDM+
Sbjct: 206  KVVNFEREMFERQHNWVIKTMD--------RGEPSPVRDEYAPVIFSQDSVSYLESLDMM 257

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN+LRAR +GK VLT+PFRLL+T+ LGV+LTF VYK  LP N T  ERI AT G
Sbjct: 258  SGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAG 317

Query: 130  YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSN--VSDDGLWLVSTLN 187
            YLGG FD+ESLVE LL QLA  Q I V+VYDITN S P+ MYG+    +D  L   S L+
Sbjct: 318  YLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLD 377

Query: 188  FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
            FGDPFRKH+M CR+ QKAP PL  ++T      I  LVG+I       I KVE+D+H M 
Sbjct: 378  FGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQ 437

Query: 248  ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML ML+DTEL  TQ+DY +TAQ  GKA
Sbjct: 438  ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKA 497

Query: 308  LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
            L++LINEVLD+AK+E+GKLELE+V F++R+ILDDVLSLFS +S++KG+ELAV++SD+VPE
Sbjct: 498  LIALINEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVPE 557

Query: 368  TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS---------- 417
             + GD GRFRQII NL+GNS+KFTEKGHIFV V+L E+  D  E +  L+          
Sbjct: 558  IVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVV 617

Query: 418  ---SSKNTLSGYPVADRCHSWKGFKTF-NQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 473
               SS NTLSGY  AD  +SW  FK   +++ S S F  SS   + L+VS+EDTG GIPL
Sbjct: 618  SKQSSYNTLSGYEAADGRNSWDSFKHLVSEEQSLSEFDISSN--VRLMVSIEDTGIGIPL 675

Query: 474  EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533
             AQ R+F PFMQ   S SR +GGTGIGLSISK LV  M+G+I F+S P+IGSTF FTAV 
Sbjct: 676  VAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWFTAVL 735

Query: 534  GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 593
                  S  ++ ++ N +   + S F+GMKA+VVD +P+RA V+RYH++RLGI V+VV+ 
Sbjct: 736  EKCDKCSAINHMKKPNVE--HLPSTFKGMKAIVVDAKPVRAAVTRYHMKRLGINVDVVTS 793

Query: 594  QLQCLSQIAS----GSKI-----INMILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQS- 641
                +   A+    GS +     ++MILVE++ W   +D       +N+        +S 
Sbjct: 794  LKTAVVAAAAFERNGSPLPTKPQLDMILVEKDSWISTEDNDSEIRLLNSRTNGNVHHKSP 853

Query: 642  KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 701
            KL L A +I++S  + +       +VIMKPLR+SM+ A LQ+ + +              
Sbjct: 854  KLALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPA 913

Query: 702  SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761
            +L+ LL G+KIL+VDDN VN +VAA  LK++GA VVC E G+ A  LL  PH FDACFMD
Sbjct: 914  TLKSLLTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMD 973

Query: 762  IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS-NFHVPILAMTADVIQATYE 820
            IQMP+MDGFEAT+ IR ME              EA E  +  +H+PILAMTADVI ATYE
Sbjct: 974  IQMPQMDGFEATRQIRMMEK-------------EAKEKTNLEWHLPILAMTADVIHATYE 1020

Query: 821  ECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
            ECL+SGMDGYVSKPFE E LY+ V++ F P P
Sbjct: 1021 ECLKSGMDGYVSKPFEEENLYKSVAKSFKPNP 1052


>gi|13359157|dbj|BAB33311.1| cytokinin receptor CRE1b [Arabidopsis thaliana]
          Length = 1080

 Score =  877 bits (2266), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/872 (54%), Positives = 598/872 (68%), Gaps = 54/872 (6%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            +V+  ERE FE+Q  W IK MD        + EPSP+ +EYAPVIF+QD+VS++ SLDM+
Sbjct: 229  KVVNFEREMFERQHNWVIKTMD--------RGEPSPVRDEYAPVIFSQDSVSYLESLDMM 280

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN+LRAR +GK VLT+PFRLL+T+ LGV+LTF VYK  LP N T  ERI AT G
Sbjct: 281  SGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAG 340

Query: 130  YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSN--VSDDGLWLVSTLN 187
            YLGG FD+ESLVE LL QLA  Q I V+VYDITN S P+ MYG+    +D  L   S L+
Sbjct: 341  YLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLD 400

Query: 188  FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
            FGDPFRKH+M CR+ QKAP PL  ++T      I  LVG+I       I KVE+D+H M 
Sbjct: 401  FGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQ 460

Query: 248  ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML ML+DTEL  TQ+DY +TAQ  GKA
Sbjct: 461  ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKA 520

Query: 308  LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
            L++LINEVLD+AK+E+GKLELE+V F++R+ILDDVLSLFS +S++KG+ELAV++SD+VPE
Sbjct: 521  LIALINEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVPE 580

Query: 368  TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS---------- 417
             + GD GRFRQII NL+GNS+KFTEKGHIFV V+L E+  D  E +  L+          
Sbjct: 581  IVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVV 640

Query: 418  ---SSKNTLSGYPVADRCHSWKGFKTF-NQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 473
               SS NTLSGY  AD  +SW  FK   +++ S S F  SS   + L+VS+EDTG GIPL
Sbjct: 641  SKQSSYNTLSGYEAADGRNSWDSFKHLVSEEQSLSEFDISSN--VRLMVSIEDTGIGIPL 698

Query: 474  EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533
             AQ R+F PFMQ   S SR +GGTGIGLSISK LV  M+G+I F+S P+IGSTF FTAV 
Sbjct: 699  VAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWFTAVL 758

Query: 534  GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 593
                  S  ++ ++ N +   + S F+GMKA+VVD +P+RA V+RYH++RLGI V+VV+ 
Sbjct: 759  EKCDKCSAINHMKKPNVE--HLPSTFKGMKAIVVDAKPVRAAVTRYHMKRLGINVDVVTS 816

Query: 594  QLQCLSQIAS----GSKI-----INMILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQS- 641
                +   A+    GS +     ++MILVE++ W   +D       +N+        +S 
Sbjct: 817  LKTAVVAAAAFERNGSPLPTKPQLDMILVEKDSWISTEDNDSEIRLLNSRTNGNVHHKSP 876

Query: 642  KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 701
            KL L A +I++S  + +       +VIMKPLR+SM+ A LQ+ + +              
Sbjct: 877  KLALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPA 936

Query: 702  SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761
            +L+ LL G+KIL+VDDN VN +VAA  LK++GA VVC E G+ A  LL  PH FDACFMD
Sbjct: 937  TLKSLLTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMD 996

Query: 762  IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS-NFHVPILAMTADVIQATYE 820
            IQMP+MDGFEAT+ IR ME              EA E  +  +H+PILAMTADVI ATYE
Sbjct: 997  IQMPQMDGFEATRQIRMMEK-------------EAKEKTNLEWHLPILAMTADVIHATYE 1043

Query: 821  ECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
            ECL+SGMDGYVSKPFE E LY+ V++ F P P
Sbjct: 1044 ECLKSGMDGYVSKPFEEENLYKSVAKSFKPNP 1075


>gi|370988691|dbj|BAL43559.1| cytokinin receptor histidine protein kinase [Petunia x hybrida]
          Length = 985

 Score =  877 bits (2265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/862 (53%), Positives = 605/862 (70%), Gaps = 35/862 (4%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RVL SEREEFE++ GWTI+ M+          EPSPI +EY+PVIF+Q+TVS++ SLDM+
Sbjct: 136 RVLNSEREEFEREHGWTIRTMER---------EPSPIRDEYSPVIFSQETVSYIESLDMM 186

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARASGK VLT PFRLL ++ LGV+LTF VYK +LP N T  ER+EAT G
Sbjct: 187 SGEEDRENILRARASGKAVLTNPFRLLGSHHLGVVLTFPVYKSKLPPNPTEQERVEATAG 246

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSN--VSDDGLWLVSTLN 187
           YLGG FD+ESLVE LL QLA+   I VNVYD+TN S  + MYG      D  L  VS L+
Sbjct: 247 YLGGAFDVESLVESLLGQLAANHPIIVNVYDVTNSSDSLIMYGHQNPKGDASLKHVSKLD 306

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKHEM CR+   AP    A++T+I I  I  L+G+    + + I KVE+D+H M 
Sbjct: 307 FGDPFRKHEMICRYLHDAPISRGAVTTAIFIFTIFVLIGYTGYKSASHINKVEDDFHKMQ 366

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+L  TQ+DY +TAQA GK+
Sbjct: 367 ELKVQAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLRSTQRDYAQTAQACGKS 426

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LINEVLD+AK+E+GKLELEAV F+LR+ILDDVLSLFS +S+ KGVELAV++SD+VP 
Sbjct: 427 LITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSDESRRKGVELAVFVSDKVPG 486

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS----SSKNTL 423
            ++GDPGRFRQ+ITNL+GNS+KFTE+GHIFV V+L E+  D ++  T L+    S   TL
Sbjct: 487 IVMGDPGRFRQVITNLVGNSVKFTEQGHIFVQVHLAEQTKDGVKNNTCLTGESESVYETL 546

Query: 424 SGYPVADRCHSWKGFK-TFNQDG--STSPFKSSSADL---INLIVSVEDTGQGIPLEAQS 477
           SGY  A   ++W   K T   +G    S  K ++ DL   + ++VSVEDTG GIP++AQ 
Sbjct: 547 SGYETAASQNTWDSLKHTIADNGLYYKSATKEANDDLSQNVTVMVSVEDTGIGIPIQAQD 606

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           R+FTPFMQ   S SR +GGTGIGLSISK LV  M G+IGF+S P IGSTF+FT    N  
Sbjct: 607 RVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIGFISRPQIGSTFSFTL---NLL 663

Query: 538 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
                  S    +  + + + F+G+ A++VD +P+RA V+ YH++RLGI+ EV     + 
Sbjct: 664 RCEKYAVSDLKKSHSDDLPTSFKGLNAIIVDGKPVRAAVTGYHLKRLGIRAEVAGSIKKA 723

Query: 598 LS------QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ-SKLFLLANSI 650
            +       + S  + ++MILVE+E+W  +     L + +++  G  ++  K+ LLA ++
Sbjct: 724 AAALGRNGSVVSNDRKLDMILVEKELWLSEDVDLNLHLPDIKPNGHVYKIPKMILLATNL 783

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
           ++S  +     V   +VIMKPLR+SM+AA L++ +G+GNK   ++      SLR LL G+
Sbjct: 784 TNSE-DEKAKAVGF-AVIMKPLRASMMAACLKQLIGIGNKREGKDM-CNGSSLRGLLCGK 840

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
           KIL+VDDN VN +VAA  LK++GA V C + GK A  LL  PH FDACFMDIQMPEMDGF
Sbjct: 841 KILVVDDNLVNRRVAAGALKKFGADVECADSGKAALSLLQIPHNFDACFMDIQMPEMDGF 900

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
           EAT+ IR++E   N ++  G ++ +       +H+PILAMTADVI AT E+CL+ GMDGY
Sbjct: 901 EATRRIRDLERVANEQL-NGGLNSDGATKWRKWHMPILAMTADVIHATLEKCLKCGMDGY 959

Query: 831 VSKPFEAEQLYREVSRFFPPIP 852
           VSKPFE E LY+ VS+FF   P
Sbjct: 960 VSKPFEEENLYQAVSKFFESKP 981


>gi|215878091|gb|ACJ63457.1| putative histidine kinase [Brassica rapa subsp. pekinensis]
          Length = 1070

 Score =  875 bits (2262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/879 (53%), Positives = 602/879 (68%), Gaps = 62/879 (7%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            +V+ +ERE FE Q  W IK MDT         EPSP+ +EYAPVIF+QD+VS++ SLDM+
Sbjct: 217  KVVNAEREMFESQHNWVIKTMDT--------GEPSPVRDEYAPVIFSQDSVSYLESLDMM 268

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN+LRAR +GK VLT+PFRLL ++ LGV+LTF VYK  LP N T  ERI AT G
Sbjct: 269  SGEEDRENILRARETGKAVLTSPFRLLASHHLGVVLTFPVYKASLPKNPTVQERIAATAG 328

Query: 130  YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSN--VSDDGLWLVSTLN 187
            YLGG FD+ESLVE LL QLA  Q I V+VYDITN S P+ MYG+     D  L+  S L+
Sbjct: 329  YLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEGDTSLYHESKLD 388

Query: 188  FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
            FGDPFRKH+M CR+ QKAP PL  ++T      I  LVG+I       I KVE+D+H M 
Sbjct: 389  FGDPFRKHKMICRYLQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAVHIVKVEDDFHEMQ 448

Query: 248  ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML ML+DTEL  TQ+DY +TAQ  GKA
Sbjct: 449  ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKA 508

Query: 308  LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
            L++LINEVLD+AK+E+GKLELE+V F++R+ILDDVLSLFS +S++KG+ELAV++SD+VPE
Sbjct: 509  LIALINEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVPE 568

Query: 368  TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS---------- 417
             + GD GRFRQII NL+GNS+KFTEKGHIFV V+L E+  D  E +  L+          
Sbjct: 569  IVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQSKDGAESKPALNGGVASEDITA 628

Query: 418  ----SSKNTLSGYPVADRCHSWKGFKTF---NQDGSTSPFKSSSADLINLIVSVEDTGQG 470
                SS NTLSGY  AD  +SW  FK      +  ++S F++SS   + L+VS+EDTG G
Sbjct: 629  ASKPSSYNTLSGYEAADGRNSWDSFKHLLSSEELLTSSEFEASSN--VRLMVSIEDTGIG 686

Query: 471  IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
            IPL AQ R+F PFMQ   S SRT+GGTGIGLSISK LV  M+G+I FVS P +GSTF FT
Sbjct: 687  IPLTAQGRVFMPFMQADSSTSRTYGGTGIGLSISKCLVELMRGQISFVSRPRVGSTFWFT 746

Query: 531  AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 590
            AVF      S +  +  + N P+S    F+GM+A+VVD +P+RA V+RYH++RLGI V+V
Sbjct: 747  AVFERCDKCSLKKPT--VENLPSS----FRGMRAIVVDAKPVRAAVTRYHMKRLGISVDV 800

Query: 591  VSDQLQCLSQ--------IASGSKIINMILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQ 640
            ++     +S         + SG+  ++MILVE++ W   +D       +N+        +
Sbjct: 801  MTSLRTAVSTASGRNGSPLPSGTTKLDMILVEKDSWISTEDIDAEIRQMNSRTNGNVRHK 860

Query: 641  S-KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP 699
            + KL L A +I++S  + +       +VIMKPLR+SM+ A LQ+ + +  K   ++ E  
Sbjct: 861  TPKLALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLEL-RKARQQHPEGS 919

Query: 700  S-MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
            S  +L+ LL G+KIL++DDN VN +VAA  LK++GA VVC E G+ A  LL  PH FDAC
Sbjct: 920  SPATLKSLLTGKKILVIDDNMVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHSFDAC 979

Query: 759  FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS-NFHVPILAMTADVIQA 817
            FMDIQMP+MDGFEAT+ IR ME              EA E     +H+PILAMTADVI A
Sbjct: 980  FMDIQMPQMDGFEATRQIRMMEK-------------EAKEKTKLEWHLPILAMTADVIHA 1026

Query: 818  TYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIPDRSP 856
            TYEECL+SGMDGYVSKPFE E LY+ V++ F   P   P
Sbjct: 1027 TYEECLKSGMDGYVSKPFEEENLYKSVAKSFKANPISDP 1065


>gi|18379305|ref|NP_565277.1| histidine kinase 4 [Arabidopsis thaliana]
 gi|42570645|ref|NP_973396.1| histidine kinase 4 [Arabidopsis thaliana]
 gi|11595487|emb|CAC18521.1| putative histidine kinase receptor [Arabidopsis thaliana]
 gi|11595489|emb|CAC18522.1| putative histidine kinase receptor [Arabidopsis thaliana]
 gi|11595491|emb|CAC18523.1| putative histidine kinase receptor [Arabidopsis thaliana]
 gi|20198055|gb|AAD21777.2| putative histidine kinase [Arabidopsis thaliana]
 gi|82569501|gb|ABB83393.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-SSRE-GFP]
 gi|82569506|gb|ABB83397.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-TR-SSRE-GFP]
 gi|330250412|gb|AEC05506.1| histidine kinase 4 [Arabidopsis thaliana]
 gi|330250413|gb|AEC05507.1| histidine kinase 4 [Arabidopsis thaliana]
          Length = 1057

 Score =  874 bits (2257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/871 (53%), Positives = 599/871 (68%), Gaps = 52/871 (5%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            +V+  ERE FE+Q  W IK MD        + EPSP+ +EYAPVIF+QD+VS++ SLDM+
Sbjct: 206  KVVNFEREMFERQHNWVIKTMD--------RGEPSPVRDEYAPVIFSQDSVSYLESLDMM 257

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN+LRAR +GK VLT+PFRLL+T+ LGV+LTF VYK  LP N T  ERI AT G
Sbjct: 258  SGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAG 317

Query: 130  YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSN--VSDDGLWLVSTLN 187
            YLGG FD+ESLVE LL QLA  Q I V+VYDITN S P+ MYG+    +D  L   S L+
Sbjct: 318  YLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLD 377

Query: 188  FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
            FGDPFRKH+M CR+ QKAP PL  ++T      I  LVG+I       I KVE+D+H M 
Sbjct: 378  FGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQ 437

Query: 248  ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML ML+DTEL  TQ+DY +TAQ  GKA
Sbjct: 438  ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKA 497

Query: 308  LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
            L++LINEVLD+AK+E+GKLELE+V F++R+ILDDVLSLFS +S++K +ELAV++SD+VPE
Sbjct: 498  LIALINEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKSIELAVFVSDKVPE 557

Query: 368  TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS---------- 417
             + GD GRFRQII NL+GNS+KFTEKGHIFV V+L E+  D  E +  L+          
Sbjct: 558  IVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVV 617

Query: 418  ---SSKNTLSGYPVADRCHSWKGFKTF-NQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 473
               SS NTLSGY  AD  +SW  FK   +++ S S F  SS   + L+VS+EDTG GIPL
Sbjct: 618  SKQSSYNTLSGYEAADGRNSWDSFKHLVSEEQSLSEFDISSN--VRLMVSIEDTGIGIPL 675

Query: 474  EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533
             AQ R+F PFMQ   S SR +GGTGIGLSISK LV  M+G+I F+S P+IGSTF FTAV 
Sbjct: 676  VAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWFTAVL 735

Query: 534  GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 593
                  S  ++ ++ N +   + S F+GMKA+VVD +P+RA V+RYH++RLGI V+VV+ 
Sbjct: 736  EKCDKCSAINHMKKPNVE--HLPSTFKGMKAIVVDAKPVRAAVTRYHMKRLGINVDVVTS 793

Query: 594  QLQCLSQIAS----GSKI-----INMILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQS- 641
                +   A+    GS +     ++MILVE++ W   +D       +N+        +S 
Sbjct: 794  LKTAVVAAAAFERNGSPLPTKPQLDMILVEKDSWISTEDNDSEIRLLNSRTNGNVHHKSP 853

Query: 642  KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 701
            KL L A +I++S  + +       +VIMKPLR+SM+ A LQ+ + +              
Sbjct: 854  KLALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPA 913

Query: 702  SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761
            +L+ LL G+KIL+VDDN VN +VAA  LK++GA VVC E G+ A  LL  PH FDACFMD
Sbjct: 914  TLKSLLTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMD 973

Query: 762  IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 821
            IQMP+MDGFEAT+ IR ME     +  + + ++E       +H+PILAMTADVI ATYEE
Sbjct: 974  IQMPQMDGFEATRQIRMME-----KETKEKTNLE-------WHLPILAMTADVIHATYEE 1021

Query: 822  CLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
            CL+SGMDGYVSKPFE E LY+ V++ F P P
Sbjct: 1022 CLKSGMDGYVSKPFEEENLYKSVAKSFKPNP 1052


>gi|30677959|ref|NP_849925.1| histidine kinase 4 [Arabidopsis thaliana]
 gi|75168993|sp|Q9C5U0.1|AHK4_ARATH RecName: Full=Histidine kinase 4; AltName: Full=Arabidopsis histidine
            kinase 4; Short=AtHK4; AltName: Full=Cytokinin receptor
            CYTOKININ RESPONSE 1; Short=AtCRE1; Short=Cytokinin
            receptor CRE1; AltName: Full=Phosphoprotein phosphatase
            AHK4; AltName: Full=Protein AUTHENTIC HIS-KINASE 4;
            AltName: Full=Protein ROOT AS IN WOL 1; AltName:
            Full=Protein WOODEN LEG
 gi|13537200|dbj|BAB40776.1| histidine kinase [Arabidopsis thaliana]
 gi|330250411|gb|AEC05505.1| histidine kinase 4 [Arabidopsis thaliana]
          Length = 1080

 Score =  874 bits (2257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/871 (53%), Positives = 599/871 (68%), Gaps = 52/871 (5%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            +V+  ERE FE+Q  W IK MD        + EPSP+ +EYAPVIF+QD+VS++ SLDM+
Sbjct: 229  KVVNFEREMFERQHNWVIKTMD--------RGEPSPVRDEYAPVIFSQDSVSYLESLDMM 280

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN+LRAR +GK VLT+PFRLL+T+ LGV+LTF VYK  LP N T  ERI AT G
Sbjct: 281  SGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAG 340

Query: 130  YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSN--VSDDGLWLVSTLN 187
            YLGG FD+ESLVE LL QLA  Q I V+VYDITN S P+ MYG+    +D  L   S L+
Sbjct: 341  YLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLD 400

Query: 188  FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
            FGDPFRKH+M CR+ QKAP PL  ++T      I  LVG+I       I KVE+D+H M 
Sbjct: 401  FGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQ 460

Query: 248  ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML ML+DTEL  TQ+DY +TAQ  GKA
Sbjct: 461  ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKA 520

Query: 308  LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
            L++LINEVLD+AK+E+GKLELE+V F++R+ILDDVLSLFS +S++K +ELAV++SD+VPE
Sbjct: 521  LIALINEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKSIELAVFVSDKVPE 580

Query: 368  TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS---------- 417
             + GD GRFRQII NL+GNS+KFTEKGHIFV V+L E+  D  E +  L+          
Sbjct: 581  IVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVV 640

Query: 418  ---SSKNTLSGYPVADRCHSWKGFKTF-NQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 473
               SS NTLSGY  AD  +SW  FK   +++ S S F  SS   + L+VS+EDTG GIPL
Sbjct: 641  SKQSSYNTLSGYEAADGRNSWDSFKHLVSEEQSLSEFDISSN--VRLMVSIEDTGIGIPL 698

Query: 474  EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533
             AQ R+F PFMQ   S SR +GGTGIGLSISK LV  M+G+I F+S P+IGSTF FTAV 
Sbjct: 699  VAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWFTAVL 758

Query: 534  GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 593
                  S  ++ ++ N +   + S F+GMKA+VVD +P+RA V+RYH++RLGI V+VV+ 
Sbjct: 759  EKCDKCSAINHMKKPNVE--HLPSTFKGMKAIVVDAKPVRAAVTRYHMKRLGINVDVVTS 816

Query: 594  QLQCLSQIAS----GSKI-----INMILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQS- 641
                +   A+    GS +     ++MILVE++ W   +D       +N+        +S 
Sbjct: 817  LKTAVVAAAAFERNGSPLPTKPQLDMILVEKDSWISTEDNDSEIRLLNSRTNGNVHHKSP 876

Query: 642  KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 701
            KL L A +I++S  + +       +VIMKPLR+SM+ A LQ+ + +              
Sbjct: 877  KLALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPA 936

Query: 702  SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761
            +L+ LL G+KIL+VDDN VN +VAA  LK++GA VVC E G+ A  LL  PH FDACFMD
Sbjct: 937  TLKSLLTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMD 996

Query: 762  IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 821
            IQMP+MDGFEAT+ IR ME     +  + + ++E       +H+PILAMTADVI ATYEE
Sbjct: 997  IQMPQMDGFEATRQIRMME-----KETKEKTNLE-------WHLPILAMTADVIHATYEE 1044

Query: 822  CLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
            CL+SGMDGYVSKPFE E LY+ V++ F P P
Sbjct: 1045 CLKSGMDGYVSKPFEEENLYKSVAKSFKPNP 1075


>gi|88319749|emb|CAF31355.1| putative histidine kinase [Cucurbita maxima]
          Length = 981

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/870 (54%), Positives = 595/870 (68%), Gaps = 57/870 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV+ SER+ FEKQ GW I+ M+          EPSP  +EYAPVIF+Q+TVS++ SLDM+
Sbjct: 135 RVIHSERDIFEKQHGWMIRTMEK---------EPSPDRDEYAPVIFSQETVSYIESLDMM 185

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT PFRLL ++ LGV+LTF VYK +LPS  T  ERIEAT G
Sbjct: 186 SGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKFKLPSIPTEEERIEATAG 245

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 187
           Y+GG FD+ESLVE LL QLA  Q I VNVYD+TN S  + MYG    D  L L   S+L+
Sbjct: 246 YVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDLLVMYGHQYQDGDLSLSHESSLD 305

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKH M CR++Q+AP    A++T+    VI  LVG+I       I KVE+D+H M 
Sbjct: 306 FGDPFRKHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQ 365

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            LK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+L  TQ+DY +TAQA GKA
Sbjct: 366 VLKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKA 425

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LINEVLD+AK+E+GKLELEAV F++R+ILDDVLSLFS KS+ KG+ELAV++SD+VPE
Sbjct: 426 LIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPE 485

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE--TELSSSK----- 420
            +IGDPGRFRQIITNL+GNS+KFTE+GHIFV V+L E    S++ E    +S S      
Sbjct: 486 IVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAENSKVSMDSEYVNGISDSGLFVLD 545

Query: 421 ----NTLSGYPVADRCHSWKGFKTF--------NQDGSTSPFKSSSADLINLIVSVEDTG 468
                TLSG   AD  +SW  FK          N   + S   +   D + L+VSVEDTG
Sbjct: 546 GREFQTLSGREAADDQNSWDNFKHLIADDNFQSNAASNNSAVTNKGCDHVTLMVSVEDTG 605

Query: 469 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 528
            GI L AQ+R+FTPFMQ   S SR +GGTGIGLSISK LV  M G+I F+S P IGSTF+
Sbjct: 606 IGILLHAQNRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFS 665

Query: 529 FTAVFGNGSSTSNEHNSQQMNNQPNS--VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
           FTAVFG       + NS     +PNS  +   F+GMKA+VVD + +RA V+RYH++RLGI
Sbjct: 666 FTAVFGKC-----KKNSMNDMKKPNSEELPPSFRGMKAIVVDSKHVRASVTRYHLKRLGI 720

Query: 587 QVEVVS--DQLQCL-----SQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639
            VEV +  +    L     S +   + + +MILVE+++   D     +   N +  G   
Sbjct: 721 IVEVTNSINMAASLFRENGSTLPRNTILPDMILVEKDILNSDEECGIIHHLNWKPNGSSV 780

Query: 640 Q-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 698
           +  KL LLA +I+++  + +       +VIMKPLR++M+AA LQ+ +GV N+        
Sbjct: 781 KFPKLILLATNIATAELDKARAAGFADTVIMKPLRATMVAACLQQVLGVKNQRRPNG--- 837

Query: 699 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
            S  L+ LL G++ILIVDDN VN +VAA  LK++GA V C + GK A +LL  PH FDAC
Sbjct: 838 -SAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKSALKLLQLPHNFDAC 896

Query: 759 FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
           FMDIQMPEMDGFEAT+ IR ME   N   + G  + E         +PILAMTADVI AT
Sbjct: 897 FMDIQMPEMDGFEATRRIRTMEVEAN---KGGLSATEGKRP-----IPILAMTADVIHAT 948

Query: 819 YEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           YEECL+ GM+GYVSKPFE E LY+EV+RFF
Sbjct: 949 YEECLKCGMNGYVSKPFEEENLYKEVARFF 978


>gi|297817796|ref|XP_002876781.1| cytokinin receptor CRE1b [Arabidopsis lyrata subsp. lyrata]
 gi|297322619|gb|EFH53040.1| cytokinin receptor CRE1b [Arabidopsis lyrata subsp. lyrata]
          Length = 1060

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/876 (53%), Positives = 601/876 (68%), Gaps = 63/876 (7%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            +V+  ERE FE+Q  W IK MD        + EPSP+ +EYAPVIF+QD++S++ SLDM+
Sbjct: 210  KVVNFEREMFERQHNWVIKTMD--------RGEPSPVRDEYAPVIFSQDSLSYLESLDMM 261

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN+LRAR +GK VLT+PFRLL+T+ LGV+LTF VYK  LP N T  ERI AT G
Sbjct: 262  SGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVQERIAATAG 321

Query: 130  YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSN--VSDDGLWLVSTLN 187
            YLGG FD+ESLVE LL QLA  Q I V+VYDITN S P+ MYG+     D  L   S L+
Sbjct: 322  YLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEGDTSLSHESKLD 381

Query: 188  FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
            FGDPFRKH+M CR+ QKAP PL  ++T      I  LVG+I       I KVE+D+H M 
Sbjct: 382  FGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQ 441

Query: 248  ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML ML+DTEL  TQ+DY +TAQ  GKA
Sbjct: 442  ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKA 501

Query: 308  LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
            L++LINEVLD+AK+E+GKLELE+V F++R+ILDDVLSLFS +S++KG+ELAV++SD+VPE
Sbjct: 502  LIALINEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVPE 561

Query: 368  TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS---------- 417
             + GD GRFRQII NL+GNS+KFTE+GHIFV V+LVE+  D  E +T L+          
Sbjct: 562  IVKGDSGRFRQIIINLVGNSVKFTERGHIFVKVHLVEQSKDEAEPKTALNGVSEEMIVVS 621

Query: 418  --SSKNTLSGYPVADRCHSWKGFKTF-NQDGSTSPFKSSSADLINLIVSVEDTGQGIPLE 474
              SS NTLSGY  AD  +SW  FK   +++ S S F  SS   + L+VS+EDTG GIPL 
Sbjct: 622  KPSSYNTLSGYEAADGRNSWDSFKHLVSEEQSLSEFDISSN--VRLMVSIEDTGIGIPLA 679

Query: 475  AQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534
            AQ R+  PFMQ   S SR +GGTGIGLSISK LV  M+G+I F+S P+IGSTF FTAV  
Sbjct: 680  AQGRVLMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQIHFISRPHIGSTFWFTAVLE 739

Query: 535  NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 594
                 S  ++ ++ N +   + S F+GM+A+VVD +P+RA V++YH++RLGI V+VV+  
Sbjct: 740  KCDKCSAINHLKKPNVE--HLPSTFKGMRAIVVDAKPVRAAVTKYHMKRLGINVDVVTSL 797

Query: 595  LQCLSQIAS----GSKI-----INMILVEQEVWEKDTSVSTLFVNN-LRKLGCGFQS--- 641
               +   A+    GS +     ++MILVE++ W     +ST  +++ +R L   F     
Sbjct: 798  KTAVVAAAAFGRNGSPLPTKPQLDMILVEKDSW-----ISTEDIDSEIRVLNSRFNGNVH 852

Query: 642  ----KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 697
                KL L A +I++S  + +       +VIMKPLR+SM+ A LQ+ + +          
Sbjct: 853  LKSPKLALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEG 912

Query: 698  LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 757
                +L+ LL  +KIL+VDDN VN +VAA  LK++GA VVC E G+ A  LL  PH FDA
Sbjct: 913  SSPATLKSLLTEKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHNFDA 972

Query: 758  CFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS-NFHVPILAMTADVIQ 816
            CFMDIQMP+MDGFEAT+ IR ME             IEA E  +  +H+PILAMTADVI 
Sbjct: 973  CFMDIQMPQMDGFEATRQIRMME-------------IEAKEKTNLEWHLPILAMTADVIH 1019

Query: 817  ATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
            ATYEECL+SGMDGYVSKPFE E LY+ V++ F P P
Sbjct: 1020 ATYEECLKSGMDGYVSKPFEEENLYKSVAKSFKPNP 1055


>gi|118790708|tpd|FAA00251.1| TPA: histidine kinase [Oryza sativa Japonica Group]
          Length = 970

 Score =  868 bits (2244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/871 (52%), Positives = 596/871 (68%), Gaps = 55/871 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           R+   ERE FE QQGW +K M         K + +P ++EYAPVIF+QDTVS++  +DM+
Sbjct: 113 RIFHHEREMFENQQGWIMKTM---------KRQAAPPQDEYAPVIFSQDTVSYLARIDMM 163

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT PFRLL +N LGV+LTFAVY+  L ++A+  ER+EAT G
Sbjct: 164 SGEEDRENILRARATGKAVLTNPFRLLGSNHLGVVLTFAVYRPGLAADASVEERVEATAG 223

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDG---LWLVSTL 186
           YLGG FD+ESLVE LL +LA  Q I VNVYD+TN S P++MYG   S DG   L+ VSTL
Sbjct: 224 YLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASEPMAMYGPQ-SPDGKVSLFHVSTL 282

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGM 246
           +FGDPFR HEMRCR++QK P P  AI+  +G  VI  LVG+I  A  +R  KV ED   M
Sbjct: 283 DFGDPFRAHEMRCRYRQKPPLPWSAITNPLGTFVIWMLVGYIICAAWSRYDKVSEDCRKM 342

Query: 247 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGK 306
            ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+ T+L +TQ+DY +TAQ  G+
Sbjct: 343 EELKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLSMTQKDYAQTAQMCGR 402

Query: 307 ALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVP 366
           AL++LIN+VLD+AK+E+GKLELEAV F+LR+++DDV+SLFS KS++K +ELAV++ D VP
Sbjct: 403 ALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVP 462

Query: 367 ETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-------EVVDSI------EVE 413
           + +IGDP R+RQI+TNL+GN++KFTE+GH+FV V L E       +V++        +VE
Sbjct: 463 KVVIGDPWRYRQILTNLVGNAVKFTERGHVFVRVCLAENSKVEANQVLNGTMNGKDGKVE 522

Query: 414 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDG-------STSPFKSSSADLINLIVSVED 466
           T  + + NTLSG+  AD  ++W  FK    D               +  D + L++S+ED
Sbjct: 523 TTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQNDCDCVTLMISIED 582

Query: 467 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
           TG GIPL AQ R+FTPFMQ   S SR +GGTGIGLSISK L   M G+I F S P +GST
Sbjct: 583 TGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSRPFVGST 642

Query: 527 FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
           FTF+AV       ++  + + ++    ++ + F+GMKA++VD RP+R  V+RYH+ RLGI
Sbjct: 643 FTFSAVLKRSCKDTSSDSKRSLS---EALPTAFKGMKAILVDGRPVRGAVTRYHLNRLGI 699

Query: 587 QVEVVSDQLQCLSQIASGSKI------INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640
            V+VV++    L  +A  + +      ++M+ +E ++W  +T +  L +N L +L    Q
Sbjct: 700 VVKVVNNLSMGLQTLAGQNGVKESREKLSMLFIESDIWRPETDI--LLLNRLHELKNNGQ 757

Query: 641 ----SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW 696
                KL LL     +S A+    G +   V+ KP+R+S +A+ LQ+ + V       N 
Sbjct: 758 VHELPKLVLLV----TSEADKDRYGSAFDIVMYKPIRASTIASCLQQLLKVVMPERKDNQ 813

Query: 697 ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 756
             PS  LR LL+G+ ILIVDDN VNL+VAAA LK+YGA V CVE GK A  LL  PH FD
Sbjct: 814 NRPSF-LRSLLIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVESGKDAVSLLQQPHCFD 872

Query: 757 ACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 816
           ACFMD+QMPEMDGFEAT+ IR+ME   N    R  + +         H+P+LAMTADVIQ
Sbjct: 873 ACFMDVQMPEMDGFEATRQIRQMEVKANE--ERKALDLMEGSTFVESHLPVLAMTADVIQ 930

Query: 817 ATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
           ATYEEC++SGMDGYVSKPF+ EQLY+ VSR 
Sbjct: 931 ATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 961


>gi|356499590|ref|XP_003518621.1| PREDICTED: histidine kinase 4-like [Glycine max]
          Length = 988

 Score =  867 bits (2239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/869 (52%), Positives = 596/869 (68%), Gaps = 57/869 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV+ SERE FEK+ GW IK M+          + S + +EYAPVIFAQ TVS++ S+DM+
Sbjct: 139 RVVNSERERFEKEHGWVIKTMER---------KSSLVRDEYAPVIFAQQTVSYLESIDMM 189

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP   T  ERIEAT G
Sbjct: 190 SGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPQKPTVEERIEATAG 249

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 187
           Y+GG FD+ESLV+ LL QL   Q I VNVYD+TN ++P+ MYG+   +  + L   S L+
Sbjct: 250 YVGGSFDVESLVKNLLGQLDGNQAILVNVYDVTNYTNPLIMYGNQYQEGDMSLAHESKLD 309

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDP+RKH+M CR+ QKAP   +A++T+    VI  LVG+I  +  N I KVE+D+H M 
Sbjct: 310 FGDPYRKHQMICRYHQKAPTNWIALTTAFLFFVILFLVGYILYSAGNHIVKVEDDFHEMQ 369

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DTEL  TQ+DY +TAQA GKA
Sbjct: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKA 429

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LINEVLD+AK+E+GKLELEAV F+LR+I+DDVLSLFS KS+ KG+ELAV++SD+VP+
Sbjct: 430 LITLINEVLDRAKIEAGKLELEAVPFDLRSIIDDVLSLFSEKSRHKGLELAVFVSDKVPD 489

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI--EVETELSSSKN---- 421
            ++GDPGRFRQIITNL+GNS+KFTE+GHIFV V+L +     +  + ET L+   +    
Sbjct: 490 IVMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLADNRKSMMNGKHETFLNGESDEVFY 549

Query: 422 --------TLSGYPVADRCHSWKGF------KTFNQDGSTSPFKSS-SADLINLIVSVED 466
                   TLSG   AD  +SW  F      K +  D S     +  S++ + L V VED
Sbjct: 550 ISGDYHFKTLSGCEAADERNSWDNFKHLIADKEYGLDSSRETMAACESSEQVTLRVCVED 609

Query: 467 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
           TG GIP  AQ RIF PF+Q   S SR +GGTGIGLSISK LV  M G+I F+S P +GST
Sbjct: 610 TGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGST 669

Query: 527 FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
           F+FTAV G    +S     + + + P    S F+GMK +VVD +P+RA V+RYH++RLGI
Sbjct: 670 FSFTAVCGAFKKSSVTDKKENLEDLP----SNFRGMKVIVVDGKPVRASVTRYHLKRLGI 725

Query: 587 QVEVVSDQLQCLS------QIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCGF 639
            V+V +   + ++       + SG    ++I+VE++ W   +  +  ++  N R      
Sbjct: 726 LVKVANSISKAVALCGKTGSLTSGMFQPDIIMVEKDTWISGEDGIFNIWKQNGRMFK--- 782

Query: 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP 699
             K+ LLA +I S+  + +       +VIMKPLR+SM+AA LQ+ +G+G +  +   ++P
Sbjct: 783 MPKMILLATNIISAEFDKAKATGFTDTVIMKPLRASMVAACLQQVLGMGKRRQLGK-DMP 841

Query: 700 SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 759
           +  L  LL G+KIL+VDDN VN +VAA  LK++GA V C E GK A E+L  PH FDACF
Sbjct: 842 NGFLHSLLYGKKILVVDDNGVNRRVAAGALKKFGADVKCAESGKAALEMLQLPHNFDACF 901

Query: 760 MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
           MDIQMPEMDGFEAT  IR ME   N  +  G          + +HVPILAMTADVI ATY
Sbjct: 902 MDIQMPEMDGFEATSRIRMMESKANEEMNNG----------NEWHVPILAMTADVIHATY 951

Query: 820 EECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           ++C++ GMDGYVSKPFE E LY+EV++FF
Sbjct: 952 DKCMKCGMDGYVSKPFEEENLYQEVAKFF 980


>gi|242038337|ref|XP_002466563.1| hypothetical protein SORBIDRAFT_01g010070 [Sorghum bicolor]
 gi|241920417|gb|EER93561.1| hypothetical protein SORBIDRAFT_01g010070 [Sorghum bicolor]
          Length = 996

 Score =  865 bits (2234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/872 (53%), Positives = 602/872 (69%), Gaps = 52/872 (5%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV  ++RE FE+QQGW IK M         K EPSP+++EYAPV+++Q+TVS++  LDM+
Sbjct: 142 RVEHADREGFERQQGWIIKTM---------KHEPSPVQDEYAPVVYSQETVSYIEGLDMM 192

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LR+RASGK VLT PFRL+ +N LGV+LTF VY  +LP +A   ER+ AT G
Sbjct: 193 SGEEDRENILRSRASGKAVLTRPFRLM-SNHLGVVLTFPVYHVDLPPDAKEEERVAATAG 251

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNV--SDDGLWLVSTLN 187
           YLGG FD+ESLVE LL QLA  Q + VNVYD+TN S P+ MYGS V       W +  L+
Sbjct: 252 YLGGSFDVESLVENLLRQLAGNQELVVNVYDVTNSSDPLVMYGSEVPLGIPSPWHICMLD 311

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKH M CR++ K P P  AIST  G+ VI  LVG+I  A  +R   V+ED   M 
Sbjct: 312 FGDPFRKHHMVCRYRNKPPLPWSAISTPSGVFVICMLVGYIVFAAWSRYDNVKEDCRKME 371

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+DT+L  TQ+D+ +TAQ  GKA
Sbjct: 372 ELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKA 431

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L+SLINEVLD+AK+E+GKL+LE+V F+LR+ILDDV++LFS KS++KG+ELAVY+S+RVPE
Sbjct: 432 LISLINEVLDRAKIEAGKLDLESVPFDLRSILDDVIALFSSKSREKGIELAVYVSERVPE 491

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE------------ 415
            L+GDPGRFRQIITNL+GNSIKFTE+GHIFV V+L +    + E E E            
Sbjct: 492 ILLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATESEVEPVANGMNGHKDE 551

Query: 416 -----LSSSKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469
                   S NTLSG+  AD  +SW+ FK   + + +  P++S S D + L+VSVEDTG 
Sbjct: 552 KTAVATGVSLNTLSGFEAADSRNSWENFKLLLSYEKNEMPYESVS-DKVTLVVSVEDTGI 610

Query: 470 GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 529
           GIPL+AQ+++FTPFMQ   S SRT+GGTGIGLSIS+ LV  M G+I FVS P +GSTFTF
Sbjct: 611 GIPLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISQCLVELMGGQINFVSRPQVGSTFTF 670

Query: 530 TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 589
           TAV       S   +S+ +   P  + S F+G+ AL+VD RP+RA V++YH+QRLGI  +
Sbjct: 671 TAVLQR-CDRSAIGDSKPVMLHP--LPSSFKGLSALLVDTRPVRATVTKYHLQRLGIACD 727

Query: 590 VVSDQLQCLSQIA--SGSKIIN-----MILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQ 640
           VV+     L  ++  +GS + +     M+L+E + W  + D S+ +  +   +       
Sbjct: 728 VVATIDLALGVLSGRNGSSLTSTKQPCMLLIESDSWGFKIDVSLRSRLLEMKQDGHTNLL 787

Query: 641 SKLFLLANSISSS-RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP 699
            K+ LLA + SS  +A+ + D     SVI KPL++S LAA L + +G+    N R     
Sbjct: 788 PKIILLAAAESSKLKAHYAVD-----SVITKPLKASALAACLFQTLGITQSSNERRDN-- 840

Query: 700 SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 759
           S SL  LLLG+ IL+VDDN VNL+VAA  LK++GA V CVE GK A  LL  P++F  C 
Sbjct: 841 SGSLHGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALLQVPYKFHLCL 900

Query: 760 MDIQMPEMDGFEATKIIREMEHNFNNR-IRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
           MDIQMPEMDGFEAT+ IR ME   N + +   +   +     + +H+P+LAMTADVIQAT
Sbjct: 901 MDIQMPEMDGFEATQQIRTMEAKANEQAVACDDSETDGATRAAKWHLPVLAMTADVIQAT 960

Query: 819 YEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
           +EEC + GMDGYV+KPFE +QL++ + +F  P
Sbjct: 961 HEECTKYGMDGYVTKPFEEKQLFQALQKFLDP 992


>gi|190148353|gb|ACE63259.1| cytokinin receptor 1 [Betula pendula]
          Length = 1004

 Score =  865 bits (2234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/875 (52%), Positives = 588/875 (67%), Gaps = 45/875 (5%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            RV+ SERE FE+Q GW IK M+          EPSP+ + YAPVIF Q++VS++ SLDM+
Sbjct: 139  RVVNSERESFERQHGWIIKTMER---------EPSPVRDVYAPVIFTQESVSYIESLDMM 189

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN+LRA A+GK VLT+PFRLL ++ LGV+LTF VYK +L S+    E IEAT G
Sbjct: 190  SGEEDRENILRATATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLSSSPAMQELIEATAG 249

Query: 130  YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 187
            Y+GG FD+ESLVE LL QLA  Q I VNVYD+TN S P+ MYG    D  L L   S L+
Sbjct: 250  YVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLIMYGHQYQDSDLSLFHESKLD 309

Query: 188  FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
            FGDPFR+H+M CR+ QKAP    A++T+    VI  LVG+I       I KVE+D+H M 
Sbjct: 310  FGDPFRRHQMICRYHQKAPMSWTALTTAFLFFVIGLLVGYILYGAGIHIVKVEDDFHEME 369

Query: 248  ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DTEL  TQ+DY +TAQ  GKA
Sbjct: 370  ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQICGKA 429

Query: 308  LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
            L++LINEVLD+AK+++GKLELEAV F LR+ILDDVLSLFS KS+ KG+ELAV++SD+VPE
Sbjct: 430  LIALINEVLDRAKIDAGKLELEAVPFVLRSILDDVLSLFSEKSRHKGIELAVFVSDKVPE 489

Query: 368  TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE------------ 415
             ++GDPGRFRQI+TNL+GNS+KFTE+GHIFV V+L E  +  +  + E            
Sbjct: 490  IVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAEHTMAMVNAKAETCLNGGSDRSLF 549

Query: 416  LSSSK--NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKS-------SSADLINLIVSVED 466
            LS  +   TLSG  VAD  +SW  FK    D       S        +++ + L+V VED
Sbjct: 550  LSGGREFKTLSGCEVADERNSWDIFKHLVADEELRSEASRNMMNTNEASEHVTLMVCVED 609

Query: 467  TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
            TG GIPL AQ R+F PFMQ   S SR +GGTGIGLSISK LV  M G+I F+S P +GST
Sbjct: 610  TGIGIPLCAQDRVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMGGQINFISRPQVGST 669

Query: 527  FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
            F+FTAVFG     +     + ++     + S F+G+KALVVD +P+RA V+RYH++RLGI
Sbjct: 670  FSFTAVFGRCKKNAFSDVKKPIS---EDLPSGFRGLKALVVDEKPVRAAVTRYHLKRLGI 726

Query: 587  QVEVVSDQLQCLSQIASGSKII------NMILVEQEVW-EKDTSVSTLFVNNLRKLGCGF 639
             VEV S     ++       +       +++LVE++ W   +      ++ + ++ G  F
Sbjct: 727  LVEVASSFKIAVAMTGKKGSLTLRKFQPDLVLVEKDSWMSAEEGGLNGWLLDWKQNGHIF 786

Query: 640  Q-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 698
            Q  K+ LLA +I  +  + +       +VIMKPLR+SM+AA LQ+ +G+G K       L
Sbjct: 787  QLPKMILLATNIDKAEFDKAKAAGFADTVIMKPLRASMVAACLQQVLGIGKKRQQEKDML 846

Query: 699  PSMS-LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 757
               S L+ LL G+KIL+VDDN VN +VA   LK++GA V C E GK A  LL  PH FDA
Sbjct: 847  NGSSFLQSLLCGKKILVVDDNRVNRRVAEGALKKFGADVECAESGKAALALLQLPHNFDA 906

Query: 758  CFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQA 817
            CFMDIQMPEMDGFEAT+ IR ME   N +I  G    E       +HVPILAMTADVI A
Sbjct: 907  CFMDIQMPEMDGFEATRQIRVMESKENEQINGGATD-EGAIRKREWHVPILAMTADVIHA 965

Query: 818  TYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
            TY+ECL+ GMDGYVSKPFE E LY+ V++FF   P
Sbjct: 966  TYDECLKCGMDGYVSKPFEEENLYQAVAKFFKSNP 1000


>gi|162459625|ref|NP_001104859.1| histidine kinase 1 [Zea mays]
 gi|12060392|dbj|BAB20583.1| histidine kinase 1 [Zea mays]
          Length = 974

 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/869 (51%), Positives = 599/869 (68%), Gaps = 51/869 (5%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV   ERE FE QQGW +  M         + EP+P + EYAPVIF+QDTVS++  +DM+
Sbjct: 117 RVFHHEREMFESQQGWVMNTM---------QREPAPPQVEYAPVIFSQDTVSYLARIDMM 167

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+ RAR +GK VLT PFRLL +N LGV+LTFAVY+ +LP++A+  +R+EAT G
Sbjct: 168 SGEEDRENIFRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIG 227

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL--VSTLN 187
           YLGG FD+ESLVE LL +LA  Q I VNVYD+TN S  + +YG +  D+ +    VS L+
Sbjct: 228 YLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLD 287

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKHEMRCR++QK P P  AI+  +G  VI  L+G+   A  +R  KV ED   M 
Sbjct: 288 FGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKME 347

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAADVAKSQFLAT SHEIRTPMNGVLGMLDML+ T+L +TQ+DY +TAQ  G+A
Sbjct: 348 ELKTQAEAADVAKSQFLATASHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRA 407

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LIN+VLD+AK+E+GKLELEAV F+LR+++DDV+SLFS KS++K +ELAV++ D VP+
Sbjct: 408 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPK 467

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-------EVVDSI------EVET 414
            +IGDP RFRQI+TNL+GN++KFTE+GH+FV V L E       +V+          VE+
Sbjct: 468 VVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVES 527

Query: 415 ELSSSKNTLSGYPVADRCHSWKGFK-------TFNQDGSTSPFKSSSADLINLIVSVEDT 467
             + + NTLSG+  ADR +SW+ FK       +   D  +     S +D + L +S+EDT
Sbjct: 528 TANGAFNTLSGFEAADRRNSWQYFKLLLSDKESLLDDLESENSNQSDSDRVTLAISIEDT 587

Query: 468 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
           G GIPL+AQ R+FTPFMQ   S SR +GGTGIGLSISK L   M G+I F S P++GSTF
Sbjct: 588 GVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTF 647

Query: 528 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 587
           TF+A   +     +  +S+ +     ++ + F+GMKA++VD RP+R+ V+RYH++RLGI 
Sbjct: 648 TFSATLKHSHKDISGDSSRSLT---EALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGIL 704

Query: 588 VEVVSDQLQCLSQI-----ASGSK-IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641
           ++VV++    +        A+GS+   +++ +E + W  +T V  L  N+LR+   G  S
Sbjct: 705 LQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLL--NHLREQKNGQLS 762

Query: 642 ---KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 698
              K+ LL     +S A+    G     V+ KP+R+S +A+S+Q+ + V       N   
Sbjct: 763 DGHKVVLLV----TSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNR 818

Query: 699 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
           PS  LR LL+G+ IL+VDDN VNL+VAAA LK+YGA V CVE GK A  LL PPH+FDAC
Sbjct: 819 PSF-LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDAC 877

Query: 759 FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
           FMD+QMPEMDGFEAT  IR+ME   N   +    SIE     + +H+P+LAMTADVIQAT
Sbjct: 878 FMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEG-STTAEYHLPVLAMTADVIQAT 936

Query: 819 YEECLRSGMDGYVSKPFEAEQLYREVSRF 847
           YEEC++SGMDGYVSKPF+ EQLY+ VSR 
Sbjct: 937 YEECIKSGMDGYVSKPFDEEQLYQAVSRL 965


>gi|224029415|gb|ACN33783.1| unknown [Zea mays]
 gi|413938768|gb|AFW73319.1| putative histidine kinase family protein [Zea mays]
          Length = 974

 Score =  862 bits (2226), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/871 (52%), Positives = 600/871 (68%), Gaps = 55/871 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV   ERE FE QQGW +  M         + EP+P + EYAPVIF+QDTVS++  +DM+
Sbjct: 117 RVFHHEREMFESQQGWVMNTM---------QREPAPPQVEYAPVIFSQDTVSYLARIDMM 167

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+ RAR +GK VLT PFRLL +N LGV+LTFAVY+ +LP++A+  +R+EAT G
Sbjct: 168 SGEEDRENIFRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIG 227

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL--VSTLN 187
           YLGG FD+ESLVE LL +LA  Q I VNVYD+TN S  + +YG +  D+ +    VS L+
Sbjct: 228 YLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLD 287

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKHEMRCR++QK P P  AI+  +G  VI  L+G+   A  +R  KV ED   M 
Sbjct: 288 FGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKME 347

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+ T+L +TQ+DY +TAQ  G+A
Sbjct: 348 ELKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRA 407

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LIN+VLD+AK+E+GKLELEAV F+LR+++DDV+SLFS KS++K +ELAV++ D VP+
Sbjct: 408 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPK 467

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-------EVVDSI------EVET 414
            +IGDP RFRQI+TNL+GN++KFTE+GH+FV V L E       +V+          VE+
Sbjct: 468 VVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNVEANQVLHGAMNGKGGRVES 527

Query: 415 ELSSSKNTLSGYPVADRCHSWKGFKTFNQD---------GSTSPFKSSSADLINLIVSVE 465
             + + NTLSG+  ADR +SW+ FK    D         G  S    S ++ + L +S+E
Sbjct: 528 TTNGAFNTLSGFEAADRRNSWQYFKLLLSDKESLLDDLEGENS--NQSDSNHVTLAISIE 585

Query: 466 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 525
           DTG GIPL+AQ R+FTPFMQ   S SR +GGTGIGLSISK L   M G+I F S P++GS
Sbjct: 586 DTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGS 645

Query: 526 TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
           TFTF+A   +     +  +S+ +     ++ + F+GMKA++VD RP+R+ V+RYH++RLG
Sbjct: 646 TFTFSATLKHSYKDISVDSSRSLT---EALPTAFKGMKAILVDGRPVRSAVTRYHLKRLG 702

Query: 586 IQVEVVSDQLQCLSQI-----ASGSK-IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639
           I ++VV++    +        A+GS+   +++ +E + W  +T V  L  N+LR+   G 
Sbjct: 703 ILLQVVNNMNAVVKAFPGQNGATGSREKASILFIESDFWRPETDVQLL--NHLREQKNGQ 760

Query: 640 QS---KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW 696
            S   K+ LL     +S A+    G     V+ KP+R+S +A+S+Q+ + V       N 
Sbjct: 761 LSDGHKVVLLV----TSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQ 816

Query: 697 ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 756
             PS  LR LL+G+ IL+VDDN VNL+VAAA LK+YGA V CVE GK A  LL PPH+FD
Sbjct: 817 NRPSF-LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFD 875

Query: 757 ACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 816
           ACFMD+QMPEMDGFEAT  IR+ME   N   +    SIE     + +H+P+LAMTADVIQ
Sbjct: 876 ACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEG-STTAEYHLPVLAMTADVIQ 934

Query: 817 ATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
           ATYEEC++SGMDGYVSKPF+ EQLY+ VSR 
Sbjct: 935 ATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 965


>gi|357138197|ref|XP_003570684.1| PREDICTED: histidine kinase 4-like [Brachypodium distachyon]
          Length = 970

 Score =  862 bits (2226), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/870 (51%), Positives = 598/870 (68%), Gaps = 53/870 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           R+   E+E FE+Q GW +K M+          E +P+++EYAPVIF+QDTVS++  +DM 
Sbjct: 114 RIFPHEKETFERQHGWNMKTMN---------QEAAPLQDEYAPVIFSQDTVSYLARMDMY 164

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT PFRLL +N LGV+LTFAVY+ +L ++A+  ER+EAT G
Sbjct: 165 SGEEDRENILRARATGKPVLTNPFRLLGSNHLGVVLTFAVYRPDLAADASVEERVEATAG 224

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDD--GLWLVSTLN 187
           YLGG FD+ESLVE LL +LA  Q I VNVYD+TN S P++MYG    D   GL  VS L+
Sbjct: 225 YLGGAFDVESLVENLLSKLAGNQDILVNVYDVTNSSEPMAMYGPQSPDGKVGLLHVSMLD 284

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFR+HEMRCR++QK P P  AI+  +G  VI  LVG+I  A  +R  KV ED   M 
Sbjct: 285 FGDPFRRHEMRCRYRQKPPMPWSAITNPLGAFVIWMLVGYIICAAWSRYDKVTEDCRKME 344

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+ T+L +TQ+D+ +TAQ  G+A
Sbjct: 345 ELKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDFAQTAQMCGRA 404

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LIN+VLD+AK+E+G+LELEAV F+LR+++DDV+SLFS KS++K +ELAV++ D VP+
Sbjct: 405 LITLINDVLDRAKIEAGRLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPK 464

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-------EVVDSI------EVET 414
            ++GDP RFRQI+TNL+GN++KFT++GH+FV V L E       +V++        +VE+
Sbjct: 465 LVVGDPWRFRQILTNLVGNAVKFTDRGHVFVRVCLAENSNVEANQVLNVTLNGKDGKVES 524

Query: 415 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST-------SPFKSSSADLINLIVSVEDT 467
             + + NTLSG+  AD  +SW+ FK    D  +            + +D + L++S+EDT
Sbjct: 525 TANGALNTLSGFQAADERNSWEYFKLLLSDKESLSNELEGEKSNQNDSDHVTLMISIEDT 584

Query: 468 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
           G GIPL AQ R+FTPFMQ   S SR +GGTGIGLSISK L G M G+I F S P+IGSTF
Sbjct: 585 GVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAGLMGGQISFTSRPSIGSTF 644

Query: 528 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 587
           TF+AV       ++  + + ++    ++ + F GMKA++VD R +R+ V+RYH+ RLGI 
Sbjct: 645 TFSAVVKRSCKDTSSDSKRSLS---ETLPTAFSGMKAILVDGRAVRSAVTRYHLNRLGII 701

Query: 588 VEVVSDQ---LQCLS---QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ- 640
           V+VV++    +Q  S     A   +  +++ +E + W  +T +  L  N L K     Q 
Sbjct: 702 VQVVNNMSVGIQAFSGQNGAAEPREKPSILFIENDTWRPETDIQLL--NRLHKPRMNGQV 759

Query: 641 ---SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 697
               KL LL     +S A+   +G     V+ KP+R+S +A+ LQ+ + V       N  
Sbjct: 760 HELPKLILL----DTSEADKDKNGSIFNVVMCKPIRASTIASCLQQLLKVEIPERKENQN 815

Query: 698 LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 757
            PS  LR LL+G+ IL+VDDN VNL+VAAA LK+YGA V CVE GK A  LL PPH FDA
Sbjct: 816 RPSF-LRSLLVGKNILVVDDNKVNLRVAAAALKKYGAKVHCVESGKDAISLLQPPHHFDA 874

Query: 758 CFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQA 817
           CFMD+QMPEMDGFEAT+ IREME   N   ++   S E    V  +H P+LAMTADVIQA
Sbjct: 875 CFMDVQMPEMDGFEATRQIREMEKKANEE-QKKLTSTEGSTFVE-WHSPVLAMTADVIQA 932

Query: 818 TYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
           TYE+C++SGMDGYVSKPF+ EQLY+ VSR 
Sbjct: 933 TYEKCMKSGMDGYVSKPFDEEQLYQAVSRL 962


>gi|113911568|gb|ABI48270.1| histidine kinase 2 [Lotus japonicus]
          Length = 996

 Score =  862 bits (2226), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/872 (53%), Positives = 605/872 (69%), Gaps = 48/872 (5%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV+ SERE FEKQ GW IK M+          E S + +EYAPVIFAQ+TVS++ SLDM+
Sbjct: 132 RVINSERERFEKQHGWVIKTMER---------ESSQVRDEYAPVIFAQETVSYLESLDMM 182

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+ED+EN+LRARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP   T  ERIEAT G
Sbjct: 183 SGEEDQENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTLEERIEATAG 242

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYG--SNVSDDGLWLVSTLN 187
           Y+GG FD+ESLVE LL QLA  Q I VNVYDITN S+P++MYG  S  +D  L   S L+
Sbjct: 243 YVGGSFDVESLVENLLGQLAGNQAILVNVYDITNCSNPLTMYGNHSEEADMSLSYESKLD 302

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDP+R H+M CR+ QK P   +A++T++   VI  LVG+I     N I KVE+D+H M 
Sbjct: 303 FGDPYRIHQMICRYHQKEPTNWVALTTAVLFFVILILVGYILYEAGNHIVKVEDDFHEMQ 362

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           +LK +AEAADVAKSQFLATVSHEIRTPMNG+LGM+ +L+DTEL  TQ+DY +TAQA GKA
Sbjct: 363 DLKVRAEAADVAKSQFLATVSHEIRTPMNGILGMMALLLDTELSSTQRDYAQTAQACGKA 422

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LINEVLD+AK+E+GKLELEAV F+LR+ILDDVLSLFS KS+ K +ELAV++SD+VP+
Sbjct: 423 LITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKSLELAVFVSDKVPD 482

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV--VDSIEVETELSSSKN---- 421
            L+GDPGRFRQIITNL+GNS+KFTE+GHIFV V+L + +  V + + ET L+   +    
Sbjct: 483 ILMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLEDNINPVMNGKHETILNGESDEVFH 542

Query: 422 --------TLSGYPVADRCHSWKGFKTF--NQD-----GSTSPFKSSSADLINLIVSVED 466
                   TLSG    D  +SW+ FK    N++      S     S S++ + L V VED
Sbjct: 543 LSGDCHFKTLSGCEAVDEQNSWENFKHLIANEERYFDCSSKMAATSESSEQVKLRVCVED 602

Query: 467 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
           TG GIP  AQ  IF PF+Q   S SR +GGTGIGLSISK LV  M G+I F S P +GST
Sbjct: 603 TGTGIPFSAQDTIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFTSRPQVGST 662

Query: 527 FTFTAVFGNGSSTS-NEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
           F+FTA FG     S ++     + + P+S    F+G+K +VVD +P+RA V+RY ++RLG
Sbjct: 663 FSFTAAFGMFKKNSVSDMKKLNLEDLPSS----FRGLKVIVVDGKPVRAAVTRYLLKRLG 718

Query: 586 IQVEVVSDQLQCLS------QIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCG 638
           I V+V +   Q ++       + SG    ++I+VE++ W   +     ++  + ++ G  
Sbjct: 719 ILVKVANSISQAVALCGKNGSLTSGMFQPDIIMVEKDTWISGEHGGFNIWKLDFKQNGHV 778

Query: 639 FQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 697
           F+  K+ LLA +I ++  + +       +VIMKPLRSSM+AA LQ+ +G+G K  +    
Sbjct: 779 FKMPKMILLATNIKNTEFDQAKATGFTDTVIMKPLRSSMVAACLQQVLGIGKKRQLGQDM 838

Query: 698 LPSMS-LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 756
           L   S L+ LL G+KIL+VDDN VN +VAA  LK++GA V CVE GK A E+L  PH FD
Sbjct: 839 LNGSSFLQSLLYGKKILVVDDNVVNRRVAAGALKKFGADVKCVESGKAALEMLQLPHCFD 898

Query: 757 ACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 816
           ACFMDIQMPEMDGFEAT  IR ME   N ++  GE+  E     S +HVPILAMTADVI 
Sbjct: 899 ACFMDIQMPEMDGFEATSKIRMMERKANEQV-NGELG-EGNTRKSEWHVPILAMTADVIH 956

Query: 817 ATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           ATY++CL+ GMDGYVSKPFE ++LY+EV++FF
Sbjct: 957 ATYDKCLKCGMDGYVSKPFEEQKLYQEVAKFF 988


>gi|302768761|ref|XP_002967800.1| cytokinin receptor [Selaginella moellendorffii]
 gi|300164538|gb|EFJ31147.1| cytokinin receptor [Selaginella moellendorffii]
          Length = 965

 Score =  860 bits (2223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/884 (51%), Positives = 590/884 (66%), Gaps = 77/884 (8%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           +V   +R  FE++ GW+IK M +      + DE       YAP + +Q+T++H+ S+DM+
Sbjct: 114 KVEHWQRRAFEEEMGWSIKEMRSNAPRAQNLDE-------YAPTVLSQNTLAHLASVDMM 166

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LR+RASGKG LT+PFRLL+++ LGV+LTF VYK +LP +ATP +RI+AT G
Sbjct: 167 SGEEDRENILRSRASGKGALTSPFRLLESDHLGVVLTFTVYKTDLPDDATPAQRIQATAG 226

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFG 189
           Y+GG FD ESLVE LL QL+  QTI VNV D+TN S+P+ MYG N+ D     V  L FG
Sbjct: 227 YVGGAFDFESLVENLLRQLSESQTIIVNVNDVTNKSNPLVMYGPNIPDGNEIEVCQLEFG 286

Query: 190 DPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMEL 249
           DPFRKHEMRCRF ++A     AI+T+ GI+VI  LV  IF A  NRIAKVEEDY  M +L
Sbjct: 287 DPFRKHEMRCRFNKEASVVWTAITTTFGIVVIVLLVAQIFYAAGNRIAKVEEDYRKMEDL 346

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K +AE+ADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQ+DY  TA  SGK L+
Sbjct: 347 KVRAESADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDSTQRDYAHTALESGKQLI 406

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            LINEVLDQAK+ESG++ELE V F LR ILDD+L+LFS +++DKG+ELA Y+S+RVP+ +
Sbjct: 407 KLINEVLDQAKIESGRMELETVPFKLRTILDDILTLFSAENKDKGIELAAYVSERVPDVV 466

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS----------- 418
           +GDP R  QI+TNL+GNSIKFT++GHIFV+V+L E+V  ++  + E  S           
Sbjct: 467 LGDPVRLHQIVTNLVGNSIKFTDRGHIFVSVHLEEDVKAAMSAQCEACSKQVTETQDHSD 526

Query: 419 ---------SKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDTG 468
                    S +TLSG   ADR ++W+ FK    Q+ S         D + L+ SVEDTG
Sbjct: 527 KLNTVDAAGSCSTLSGLEAADRRNNWETFKLILKQEKSRLTTHKQPVDTVKLVFSVEDTG 586

Query: 469 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 528
            GIP+ AQ R+F+PFMQ   S SR +GGTGIGLSISK LV  MKGEIGFVS   +G+TF 
Sbjct: 587 VGIPVHAQERVFSPFMQADSSTSRNYGGTGIGLSISKCLVELMKGEIGFVSSLGVGTTFW 646

Query: 529 FTAVFGNG------SSTSNEHNSQQMNNQPNS-VSSEFQGMKALVVDPRPIRAKVSRYHI 581
           FT  F  G      ++ S E + QQ     ++ ++++  G+KALVVD RP+R++V+RYH+
Sbjct: 647 FTVNFKVGDLEALEAAHSAECSKQQRAAHSSTPLTTQLSGLKALVVDGRPVRSEVTRYHL 706

Query: 582 QRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641
           +RLGIQV+V SD    L+     SK ++MIL++++ W   T +S  + + +++ G     
Sbjct: 707 RRLGIQVDVASDVSSALAH--QRSKNLDMILIDKDAWGSSTGLS--YPSKIKEAGPTLAP 762

Query: 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRN------ 695
           KL LLA      +A  +  G S  +VI KPLR+S +A  L++A+G+  K   R       
Sbjct: 763 KLVLLAFDDDEHKAKAA--GFS-DNVIKKPLRASYIANHLEKALGLDLKRRTRESSTPTS 819

Query: 696 -----------WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 744
                          S +L  LL G+ IL+VDDN VN +VAA  L++YGA V CVE G+ 
Sbjct: 820 SSSDTSASINSGSGSSNNLHSLLTGKWILVVDDNKVNRRVAAGALQKYGARVECVESGRL 879

Query: 745 ATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH 804
           A E L PPH+FDACFMDIQMPEMDGFEAT+ IR                   +E     H
Sbjct: 880 AIEKLEPPHKFDACFMDIQMPEMDGFEATRRIR------------------CFEKRGGSH 921

Query: 805 VPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           VPILAMTADVIQATY+EC R GMD YVSKPFE +QLYR V++FF
Sbjct: 922 VPILAMTADVIQATYDECRRCGMDDYVSKPFEEKQLYRAVAKFF 965


>gi|242066054|ref|XP_002454316.1| hypothetical protein SORBIDRAFT_04g028550 [Sorghum bicolor]
 gi|241934147|gb|EES07292.1| hypothetical protein SORBIDRAFT_04g028550 [Sorghum bicolor]
          Length = 973

 Score =  859 bits (2220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/870 (51%), Positives = 602/870 (69%), Gaps = 54/870 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV   ERE FE QQGW +  M         + EP+P  +EYAPVIF+QDTVS++  +DM+
Sbjct: 117 RVFHHEREMFESQQGWIMNTM---------QREPAPPRDEYAPVIFSQDTVSYLARIDMM 167

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+ED+EN+LRAR +GK VLT PFRLL +N LGV+LTFAVY+ +LP++A+  +R+EAT G
Sbjct: 168 SGEEDQENILRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIG 227

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL-VSTLNF 188
           YLGG FD+ESLVE LL +LA  Q I VNVYD+TN S P+++YG ++ D+ + L VS L+F
Sbjct: 228 YLGGGFDVESLVENLLSKLAGNQDIVVNVYDVTNASEPMALYGPSILDEQVPLHVSMLDF 287

Query: 189 GDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMME 248
           GDPFR+HEMRCR++QK P P   I+  +G+ VI  L+G+   A  +R  KV ED   M E
Sbjct: 288 GDPFRRHEMRCRYRQKPPIPWSTITNPLGLFVIWMLLGYSIAAAYSRYDKVTEDCRKMEE 347

Query: 249 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 308
           LK +AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+ T+L +TQ+DY +TAQ  G+AL
Sbjct: 348 LKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRAL 407

Query: 309 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 368
           ++LIN+VLD+AK+E+GKLELEAV F+LR+++DDV+SLFS KS++K +ELAV++ D VP+ 
Sbjct: 408 ITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPKV 467

Query: 369 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-------EVVDSI------EVETE 415
           ++GDP RFRQI+TNL+GN++KFTE+GH+FV V L E       +V+         +VE+ 
Sbjct: 468 VLGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGTMNGKDGKVEST 527

Query: 416 LSSSKNTLSGYPVADRCHSWKGFKTF---------NQDGSTSPFKSSSADLINLIVSVED 466
            + + NTLSG+  ADR +SW+ FK           + +G  S    S +D + L +S+ED
Sbjct: 528 TNGAFNTLSGFEAADRRNSWQYFKLLLSNKESLLDDLEGENSNL--SDSDHVTLAISIED 585

Query: 467 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
           TG GIPL+AQ R+FTPFMQ   S SR +GGTGIGLSISK L   M G+I F S P +GST
Sbjct: 586 TGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSRPFVGST 645

Query: 527 FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
           FTF+A         +  +S+ ++    ++ + F+GMKA+++D RP+R+ V++YH++RLGI
Sbjct: 646 FTFSATLKRSYKDISVDSSRSLS---EALPTAFKGMKAILIDGRPVRSAVTKYHLKRLGI 702

Query: 587 QVEVVSDQLQCLSQIA--SGSKI----INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640
            V+VV++    +      +G+ +      M+ +E + W  +T V  L  N+LR+   G  
Sbjct: 703 IVQVVNNMSTVVKAFPGQNGATVSREKATMLFIESDFWRPETDVQLL--NHLREHKNGLL 760

Query: 641 S---KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 697
           S   K+ LL     +S A+    G     V+ KP+R+S +A+S+Q+ + V       N  
Sbjct: 761 SDAPKVVLLV----TSEADKDNYGSIFDIVMCKPIRASTIASSIQQLLKVEMPKRKENQN 816

Query: 698 LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 757
            PS  LR LL+G+ IL+VDDN VNL+VAAA LK+YGA V CVE GK A  LL PPH F A
Sbjct: 817 RPSF-LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHSFHA 875

Query: 758 CFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQA 817
           CFMD+QMPEMDGFEAT+ IR+ME   N   R+ ++S+        + +P+LAMTADVIQA
Sbjct: 876 CFMDVQMPEMDGFEATRQIRQMEMKANEE-RKNKLSLTEASTFVEYRLPVLAMTADVIQA 934

Query: 818 TYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
           TYEEC++SGMDGYVSKPF+ EQL + VSR 
Sbjct: 935 TYEECIKSGMDGYVSKPFDEEQLCQVVSRL 964


>gi|218191539|gb|EEC73966.1| hypothetical protein OsI_08865 [Oryza sativa Indica Group]
          Length = 985

 Score =  858 bits (2218), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/886 (51%), Positives = 596/886 (67%), Gaps = 70/886 (7%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           R+   ERE FE QQGW +K M         K + +P ++EYAPVIF+QDTVS++  +DM+
Sbjct: 113 RIFHHEREMFENQQGWIMKTM---------KRQAAPPQDEYAPVIFSQDTVSYLARIDMM 163

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT PFRLL +N LGV+LTFAVY+  L ++A+  ER+EAT G
Sbjct: 164 SGEEDRENILRARATGKAVLTNPFRLLGSNHLGVVLTFAVYRPGLAADASVEERVEATAG 223

Query: 130 ---------------YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSN 174
                          YLGG FD+ESLVE LL +LA  Q I VNVYD+TN S P++MYG  
Sbjct: 224 CLVVVVSSNQIPTNRYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASEPMAMYGPQ 283

Query: 175 VSDDG---LWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQA 231
            S DG   L+ VSTL+FGDPFR HEMRCR++QK P P  AI+  +G  VI  LVG+I  A
Sbjct: 284 -SPDGKVSLFHVSTLDFGDPFRAHEMRCRYRQKPPLPWSAITNPLGTFVIWMLVGYIICA 342

Query: 232 TVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 291
             +R  KV ED   M ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+ T+L 
Sbjct: 343 AWSRYDKVSEDCRKMEELKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLS 402

Query: 292 VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 351
           +TQ+DY +TAQ  G+AL++LIN+VLD+AK+E+GKLELEAV F+LR+++DDV+SLFS KS+
Sbjct: 403 MTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSR 462

Query: 352 DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE------- 404
           +K +ELAV++ D VP+ +IGDP R+RQI+TNL+GN++KFTE+GH+FV V L E       
Sbjct: 463 EKCIELAVFVCDDVPKVVIGDPWRYRQILTNLVGNAVKFTERGHVFVRVCLAENSKVEAN 522

Query: 405 EVVDSI------EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDG-------STSPFK 451
           +V++        +VET  + + NTLSG+  AD  ++W  FK    D              
Sbjct: 523 QVLNGTMNGKDGKVETTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSY 582

Query: 452 SSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRM 511
            +  D + L++S+EDTG GIPL AQ R+FTPFMQ   S SR +GGTGIGLSISK L   M
Sbjct: 583 QNDCDCVTLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 642

Query: 512 KGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRP 571
            G+I F S P +GSTFTF+AV       ++  + + ++    ++ + F+GMKA++VD RP
Sbjct: 643 GGQISFTSRPFVGSTFTFSAVLKRSCKDTSSDSKRSLS---EALPTAFKGMKAILVDGRP 699

Query: 572 IRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI------INMILVEQEVWEKDTSVS 625
           +R  V+RYH+ RLGI V+VV++    L  +A  + +      ++M+ +E ++W  +T + 
Sbjct: 700 VRGAVTRYHLNRLGIVVKVVNNLSMGLQTLAGQNGVKESREKLSMLFIESDIWRPETDI- 758

Query: 626 TLFVNNLRKLGCGFQ----SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 681
            L +N L +L    Q     KL LL     +S A+    G +   V+ KP+R+S +A+ L
Sbjct: 759 -LLLNRLHELKNNGQVHELPKLVLLV----TSEADKDRYGSAFDIVMYKPIRASTIASCL 813

Query: 682 QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVER 741
           Q+ + V       N   PS  LR LL+G+ ILIVDDN VNL+VAAA LK+YGA V CVE 
Sbjct: 814 QQLLKVVMPERKDNQNRPSF-LRSLLIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVES 872

Query: 742 GKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS 801
           GK A  LL  PH FDACFMD+QMPEMDGFEAT+ IR+ME   N    R  + +       
Sbjct: 873 GKDAVSLLQQPHCFDACFMDVQMPEMDGFEATRQIRQMEVKANE--ERKALDLMEGSTFV 930

Query: 802 NFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
             H+P+LAMTADVIQATYEEC++SGMDGYVSKPF+ EQLY+ VSR 
Sbjct: 931 ESHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 976


>gi|89242035|dbj|BAE80688.1| histidine kinase [Zea mays]
          Length = 995

 Score =  858 bits (2216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/871 (52%), Positives = 600/871 (68%), Gaps = 51/871 (5%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV+  +RE FE+QQGW IK M         K EPSP+++EYAPV+++Q+TVS++  LDM+
Sbjct: 142 RVVHGDRESFERQQGWIIKTM---------KHEPSPVQDEYAPVVYSQETVSYIEGLDMM 192

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LR+RASGK VLT PFRL+ +N LGV+LTF VY  +L S+A   +R+ AT G
Sbjct: 193 SGEEDRENILRSRASGKAVLTRPFRLM-SNHLGVVLTFPVYHVDLSSDAKEEDRVAATAG 251

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVS--DDGLWLVSTLN 187
           YLGG FD+ESLVE LL QLA  Q + VNVYD+TN S+P+ MYGS VS  +     +  L+
Sbjct: 252 YLGGSFDVESLVENLLRQLAGNQELVVNVYDVTNSSNPLVMYGSEVSLGNPSPSHICMLD 311

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKH M CR++ K   P  AIS+S G+ VI  LVG+I  A  +R   V+ED   M 
Sbjct: 312 FGDPFRKHHMVCRYRNKPQLPWSAISSSSGVFVICMLVGYIVGAAWSRYDNVKEDCRKME 371

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+DT+L  TQ+D+ +TAQ  GKA
Sbjct: 372 ELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKA 431

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L+SLINEVLD+AK+E+GKL+LE+V F+LR+ILDDV+SLFS KS++KG+ELAVY+S+RVPE
Sbjct: 432 LISLINEVLDRAKIEAGKLDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPE 491

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL-----------VEEVVDSI------ 410
            L+GDPGRFRQIITNL+GNSIKFTE+GHIFV V+L           VE V + +      
Sbjct: 492 LLLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATESKVESVANGMNGHKDE 551

Query: 411 EVETELSSSKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469
           +     S S NTLSG+  AD  +SW+ FK   + + +  P++S S D + L+VSVEDTG 
Sbjct: 552 KTAVATSVSLNTLSGFEAADSRNSWENFKLLLSYEKNEMPYESVS-DKVTLVVSVEDTGI 610

Query: 470 GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 529
           GIPL+AQ+++FTPFMQ   S SRT+GGTGIGLSISK LV  M G+I FVS P++GSTFTF
Sbjct: 611 GIPLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTF 670

Query: 530 TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 589
           TA        S   +S+ +   P  + S F+G+ AL+VD RP+RA V++YH+QRLGI  +
Sbjct: 671 TAALQR-CDRSAIGDSKPVMLHP--LPSSFKGLSALLVDRRPVRATVTKYHLQRLGIACD 727

Query: 590 VVSDQLQCLSQIA--SGSKIIN-----MILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQ 640
           VV+     L  ++  +GS + +     M+L+E + W  + D  + +  +   +    G  
Sbjct: 728 VVATIELALGVLSGRNGSSLTSTKQPCMLLIESDSWGFKIDVPLRSRLLEMKQNGPPGLP 787

Query: 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 700
             + L A      +A+ + D     SVI KPL++S LAA L + +G+    N R     S
Sbjct: 788 KTILLAAAESGKLKAHYAVD-----SVITKPLKASGLAACLFQTLGITQSSNERRDN--S 840

Query: 701 MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
            SL  LLLG+ IL+VDDN VNL+VAA  LK++GA V CVE GK A   L  PH+F  C M
Sbjct: 841 GSLHGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALASLQVPHKFHLCLM 900

Query: 761 DIQMPEMDGFEATKIIREMEHNFNNR-IRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
           DIQMPEMDGFEATK IR ME   N + +   +   +     + +H+P+LAMTADVIQAT+
Sbjct: 901 DIQMPEMDGFEATKQIRAMEAKANEQAVACDDSDTDGATRAARWHLPVLAMTADVIQATH 960

Query: 820 EECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
           EEC + GMDGYV+KPFE +QL++ + +F  P
Sbjct: 961 EECTKYGMDGYVTKPFEEKQLFQALQKFLDP 991


>gi|162458745|ref|NP_001105858.1| LOC732762 [Zea mays]
 gi|89242033|dbj|BAE80687.1| histidine kinase [Zea mays]
          Length = 995

 Score =  858 bits (2216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/871 (52%), Positives = 600/871 (68%), Gaps = 51/871 (5%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV+  +RE FE+QQGW IK M         K EPSP+++EYAPV+++Q+TVS++  LDM+
Sbjct: 142 RVVHGDRESFERQQGWIIKTM---------KHEPSPVQDEYAPVVYSQETVSYIEGLDMM 192

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LR+RASGK VLT PFRL+ +N LGV+LTF VY  +L S+A   +R+ AT G
Sbjct: 193 SGEEDRENILRSRASGKAVLTRPFRLM-SNHLGVVLTFPVYHVDLSSDAKEEDRVAATAG 251

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVS--DDGLWLVSTLN 187
           YLGG FD+ESLVE LL QLA  Q + VNVYD+TN S+P+ MYGS VS  +     +  L+
Sbjct: 252 YLGGSFDVESLVENLLRQLAGNQELVVNVYDVTNSSNPLVMYGSEVSLGNPSPSHICMLD 311

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKH M CR++ K   P  AIS+S G+ VI  LVG+I  A  +R   V+ED   M 
Sbjct: 312 FGDPFRKHHMVCRYRNKPQLPWSAISSSSGVFVICMLVGYIVGAAWSRYDNVKEDCRKME 371

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+DT+L  TQ+D+ +TAQ  GKA
Sbjct: 372 ELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKA 431

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L+SLINEVLD+AK+E+GKL+LE+V F+LR+ILDDV+SLFS KS++KG+ELAVY+S+RVPE
Sbjct: 432 LISLINEVLDRAKIEAGKLDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPE 491

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL-----------VEEVVDSI------ 410
            L+GDPGRFRQIITNL+GNSIKFTE+GHIFV V+L           VE V + +      
Sbjct: 492 LLLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATEPKVESVANGMNGHKDE 551

Query: 411 EVETELSSSKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469
           +     S S NTLSG+  AD  +SW+ FK   + + +  P++S S D + L+VSVEDTG 
Sbjct: 552 KTAVATSVSLNTLSGFEAADSRNSWENFKLLLSYEKNEMPYESVS-DKVTLVVSVEDTGI 610

Query: 470 GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 529
           GIPL+AQ+++FTPFMQ   S SRT+GGTGIGLSISK LV  M G+I FVS P++GSTFTF
Sbjct: 611 GIPLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTF 670

Query: 530 TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 589
           TA        S   +S+ +   P  + S F+G+ AL+VD RP+RA V++YH+QRLGI  +
Sbjct: 671 TAALQR-CDRSAIGDSKPVMLHP--LPSSFKGLSALLVDRRPVRATVTKYHLQRLGIACD 727

Query: 590 VVSDQLQCLSQIA--SGSKIIN-----MILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQ 640
           VV+     L  ++  +GS + +     M+L+E + W  + D  + +  +   +    G  
Sbjct: 728 VVATIELALGVLSGRNGSSLTSTKQPCMLLIESDSWGFKIDVPLRSRLLEMKQNGPPGLP 787

Query: 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 700
             + L A      +A+ + D     SVI KPL++S LAA L + +G+    N R     S
Sbjct: 788 KTILLAAAESGKLKAHYAVD-----SVITKPLKASGLAACLFQTLGITQSSNERRDN--S 840

Query: 701 MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
            SL  LLLG+ IL+VDDN VNL+VAA  LK++GA V CVE GK A   L  PH+F  C M
Sbjct: 841 GSLHGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALASLQVPHKFHLCLM 900

Query: 761 DIQMPEMDGFEATKIIREMEHNFNNR-IRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
           DIQMPEMDGFEATK IR ME   N + +   +   +     + +H+P+LAMTADVIQAT+
Sbjct: 901 DIQMPEMDGFEATKQIRAMEAKANEQAVACDDSETDGATRAARWHLPVLAMTADVIQATH 960

Query: 820 EECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
           EEC + GMDGYV+KPFE +QL++ + +F  P
Sbjct: 961 EECTKYGMDGYVTKPFEEKQLFQALQKFLDP 991


>gi|414872484|tpg|DAA51041.1| TPA: putative histidine kinase family protein [Zea mays]
          Length = 997

 Score =  857 bits (2215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/871 (52%), Positives = 600/871 (68%), Gaps = 51/871 (5%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV+  +RE FE+QQGW IK M         K EPSP+++EYAPV+++Q+TVS++  LDM+
Sbjct: 144 RVVHGDRESFERQQGWIIKTM---------KHEPSPVQDEYAPVVYSQETVSYIEGLDMM 194

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LR+RASGK VLT PFRL+ +N LGV+LTF VY  +L S+A   +R+ AT G
Sbjct: 195 SGEEDRENILRSRASGKAVLTRPFRLM-SNHLGVVLTFPVYHVDLSSDAKEEDRVAATAG 253

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVS--DDGLWLVSTLN 187
           YLGG FD+ESLVE LL QLA  Q + VNVYD+TN S+P+ MYGS VS  +     +  L+
Sbjct: 254 YLGGSFDVESLVENLLRQLAGNQELVVNVYDVTNSSNPLVMYGSEVSLGNPSPSHICMLD 313

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKH M CR++ K   P  AIS+S G+ VI  LVG+I  A  +R   V+ED   M 
Sbjct: 314 FGDPFRKHHMVCRYRNKPQLPWSAISSSSGVFVICMLVGYIVGAAWSRYDNVKEDCRKME 373

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+DT+L  TQ+D+ +TAQ  GKA
Sbjct: 374 ELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKA 433

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L+SLINEVLD+AK+E+GKL+LE+V F+LR+ILDDV+SLFS KS++KG+ELAVY+S+RVPE
Sbjct: 434 LISLINEVLDRAKIEAGKLDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPE 493

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL-----------VEEVVDSI------ 410
            L+GDPGRFRQIITNL+GNSIKFTE+GHIFV V+L           VE V + +      
Sbjct: 494 LLLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATEPKVESVANGMNGHKDE 553

Query: 411 EVETELSSSKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469
           +     S S NTLSG+  AD  +SW+ FK   + + +  P++S S D + L+VSVEDTG 
Sbjct: 554 KTAVATSVSLNTLSGFEAADSRNSWENFKLLLSYEKNEMPYESVS-DKVTLVVSVEDTGI 612

Query: 470 GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 529
           GIPL+AQ+++FTPFMQ   S SRT+GGTGIGLSISK LV  M G+I FVS P++GSTFTF
Sbjct: 613 GIPLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTF 672

Query: 530 TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 589
           TA        S   +S+ +   P  + S F+G+ AL+VD RP+RA V++YH+QRLGI  +
Sbjct: 673 TAALQR-CDRSAIGDSKPVMLHP--LPSSFKGLSALLVDRRPVRATVTKYHLQRLGIACD 729

Query: 590 VVSDQLQCLSQIA--SGSKIIN-----MILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQ 640
           VV+     L  ++  +GS + +     M+L+E + W  + D  + +  +   +    G  
Sbjct: 730 VVATIELALGVLSGRNGSSLTSTKQPCMLLIESDSWGFKIDVPLRSRLLEMKQNGPPGLP 789

Query: 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 700
             + L A      +A+ + D     SVI KPL++S LAA L + +G+    N R     S
Sbjct: 790 KTILLAAAESGKLKAHYAVD-----SVITKPLKASGLAACLFQTLGITQSSNERRDN--S 842

Query: 701 MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
            SL  LLLG+ IL+VDDN VNL+VAA  LK++GA V CVE GK A   L  PH+F  C M
Sbjct: 843 GSLHGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALASLQVPHKFHLCLM 902

Query: 761 DIQMPEMDGFEATKIIREMEHNFNNR-IRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
           DIQMPEMDGFEATK IR ME   N + +   +   +     + +H+P+LAMTADVIQAT+
Sbjct: 903 DIQMPEMDGFEATKQIRAMEAKANEQAVACDDSETDGATRAARWHLPVLAMTADVIQATH 962

Query: 820 EECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
           EEC + GMDGYV+KPFE +QL++ + +F  P
Sbjct: 963 EECTKYGMDGYVTKPFEEKQLFQALQKFLDP 993


>gi|297737593|emb|CBI26794.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  857 bits (2215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/855 (53%), Positives = 572/855 (66%), Gaps = 90/855 (10%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV  SERE FEKQ GWTIK M         K E SPI +EYAPVIF+Q+TVS++ SLDM+
Sbjct: 59  RVAYSERERFEKQHGWTIKTM---------KREASPIRDEYAPVIFSQETVSYIESLDMM 109

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP N T  +RIEAT G
Sbjct: 110 SGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTVEQRIEATAG 169

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 187
           YLGG FD+ESLVE LL QLA  Q I VNVYD+TN S P+ MYG    D  + L+  S L+
Sbjct: 170 YLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGRQYQDVDMSLLHESKLD 229

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKH+M CR+ QK P    +++T+    VI  LVG+I       I KVE+D+H M 
Sbjct: 230 FGDPFRKHQMICRYHQKEPTSWTSLTTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQ 289

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+L  TQ+DY +TAQA GKA
Sbjct: 290 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQACGKA 349

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LINEVLD+AK+E+GKLELEAV FNLR+ILDDVLSLFS KS+ KG+ELAV++SD+VPE
Sbjct: 350 LITLINEVLDRAKIEAGKLELEAVPFNLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPE 409

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 427
            +IGDPGRFRQIITNL+GNS+KFTE+GHIFV V+L E     ++ + E SS K       
Sbjct: 410 MVIGDPGRFRQIITNLVGNSVKFTERGHIFVQVHLAEHTKALMDAKAETSSEK------- 462

Query: 428 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487
                                         + L+VSVEDTG GIPL AQ R+FTPFMQ  
Sbjct: 463 ------------------------------VTLMVSVEDTGIGIPLRAQGRVFTPFMQAD 492

Query: 488 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 547
            S SR +GGTGIGLSISK LV  M G+I F+S P IGSTF+FTA FG             
Sbjct: 493 SSTSRNYGGTGIGLSISKCLVELMGGQIKFISRPQIGSTFSFTADFGR------------ 540

Query: 548 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS------QI 601
                               D RP+RA V++YH++RLGI VEV +   + ++       +
Sbjct: 541 -------------------FDGRPVRAIVTKYHLKRLGILVEVANSIKKAVAITGKNGSL 581

Query: 602 ASGS-KIINMILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 658
            SGS    +MILVE++ W  E+D  ++   ++  +        K+ LLA +ISS+  + +
Sbjct: 582 TSGSGNQPDMILVEKDSWISEEDADLNLRLLDWKQNRHTLKLPKMILLATNISSAEFDKA 641

Query: 659 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI-RNWELPSMSLRHLLLGRKILIVDD 717
                  +VIMKPLR+SM+AA LQ+ +G+G K    ++    S  L+ LL G+KIL+VDD
Sbjct: 642 KAAGFADTVIMKPLRASMVAACLQQVLGLGKKRQQGKDMLNGSAFLQSLLCGKKILVVDD 701

Query: 718 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
           N VN +VAA  LK++GA V C E GK A +LL  PH FDACFMDIQMPEMDGFEAT+ IR
Sbjct: 702 NKVNRRVAAGALKKFGADVECAESGKAALQLLQLPHNFDACFMDIQMPEMDGFEATRRIR 761

Query: 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
            +E   N ++  G  + E       +HVPILAMTADVI ATY++CL+ GMDGYVSKPFE 
Sbjct: 762 LIESKANEQM-NGGCTPEGAATKGEWHVPILAMTADVIHATYDKCLKCGMDGYVSKPFEE 820

Query: 838 EQLYREVSRFFPPIP 852
           E LY+ V++FF   P
Sbjct: 821 ENLYQAVAKFFKSKP 835


>gi|356521173|ref|XP_003529232.1| PREDICTED: histidine kinase 4-like [Glycine max]
          Length = 987

 Score =  857 bits (2214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/869 (52%), Positives = 600/869 (69%), Gaps = 58/869 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV+ SERE FEK+ GW IK M+          + S + +EYAPVIFAQ+TVS++ SLDM+
Sbjct: 139 RVVNSERERFEKEHGWVIKTMER---------KSSLVRDEYAPVIFAQETVSYLESLDMM 189

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT+PF LL ++ LGV+LTF VYK +LP   T  ERIEAT G
Sbjct: 190 SGEEDRENILRARATGKAVLTSPFSLLGSHHLGVVLTFPVYKSKLPQKPTVEERIEATAG 249

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 187
           Y+GG FD+ESLV+ LL QL   Q I VNVYDITN ++P+ MYG+   +  + LV  S L+
Sbjct: 250 YVGGSFDVESLVKNLLGQLDGNQAILVNVYDITNYTNPLVMYGNLYEEGDMSLVHESKLD 309

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDP+RKH+M CR+ QKAP   +A++T+    VI  LVG+I     N I KVE+D+H M 
Sbjct: 310 FGDPYRKHQMICRYHQKAPTNWIALTTAFLFFVILFLVGYILYGAGNHIVKVEDDFHAME 369

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAAD+AKSQFLATVSHEIRTPMNG+LGML +L+DTEL  TQ+DY +TAQA GKA
Sbjct: 370 ELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKA 429

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LINEVLD+AK+E+GKLELEAV F+LR+I+DDVLSLFS KS+ KG+ELAV++SD+VP+
Sbjct: 430 LITLINEVLDRAKIEAGKLELEAVPFDLRSIIDDVLSLFSEKSRHKGLELAVFVSDKVPD 489

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE--EVVDSIEVETELSSSKN---- 421
            ++GDPGRFRQIITNL+GNS+KFTE+GHIFV V+L +  + + + + +T L+   +    
Sbjct: 490 IVMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLADNRKSIMNGKHDTFLNGESDEVFH 549

Query: 422 --------TLSGYPVADRCHSWKGFK------TFNQDGSTSPFKSS-SADLINLIVSVED 466
                   TLSG   AD  +SW  FK       +  D S     +  S++ + L V VED
Sbjct: 550 ISGDYHFKTLSGCEAADERNSWDNFKHLIADEEYGLDSSRETMAACESSEQVTLRVCVED 609

Query: 467 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
           TG GIP  AQ  IF PF+Q   S SR +GGTGIGLSISK LV  M G+I F+S P +GST
Sbjct: 610 TGIGIPFSAQDGIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGST 669

Query: 527 FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
           F+FTAV      +S  +  + + + P+S    F+GMK +VVD +P+RA V+RYH++RLGI
Sbjct: 670 FSFTAVCEAFKKSSVTNKKKNLEDLPSS----FRGMKVIVVDGKPVRAAVTRYHLKRLGI 725

Query: 587 QVEVVSDQLQCLS------QIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCGF 639
            V+V +   + ++       + SG    ++I+VE++ W   +  +   + +N R +    
Sbjct: 726 LVKVANRISKAVALCGKSGSLKSGMFQPDIIMVEKDTWITGEDGIFNTWKHNGRTIK--- 782

Query: 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP 699
             K+ LLA +IS++  + +       +VIMKPLR+SM+AA LQ+ +G+G K  +   ++P
Sbjct: 783 MPKMILLATNISNAEFDKAKFTGFTDTVIMKPLRASMVAACLQQVLGMGKKRQLGK-DMP 841

Query: 700 SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 759
           +  L  LL G+KIL+VDDN VN +VAA  LK++GA V C E GK A E+L  PH FDACF
Sbjct: 842 NGFLHSLLYGKKILVVDDNGVNRRVAAGALKKFGADVKCAESGKVALEMLQLPHNFDACF 901

Query: 760 MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
           MDIQMPEMDGFEAT  IR ME   N  +           N S +HVPILAMTADVI ATY
Sbjct: 902 MDIQMPEMDGFEATSRIRMMESKANEEM-----------NGSEWHVPILAMTADVILATY 950

Query: 820 EECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           ++C++ GMDGYVSKPFE E LY+EV++FF
Sbjct: 951 DKCVKCGMDGYVSKPFEEENLYQEVAKFF 979


>gi|218193648|gb|EEC76075.1| hypothetical protein OsI_13298 [Oryza sativa Indica Group]
          Length = 923

 Score =  856 bits (2211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/882 (52%), Positives = 597/882 (67%), Gaps = 62/882 (7%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV+ ++RE FE+QQGW IK M         K EPSP ++EYAPVI++Q+T+S++  LD++
Sbjct: 59  RVVHADRESFERQQGWIIKTM---------KHEPSPAQDEYAPVIYSQETISYIEGLDVM 109

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT PFRL+ +N LGV+LTF VY  +LP++    +R+ AT G
Sbjct: 110 SGEEDRENILRARATGKAVLTRPFRLM-SNHLGVVLTFPVYLVDLPNDTAVEDRVAATAG 168

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVS----- 184
           YLGG FD+ESLVE LL QLA  Q + VNVYD+TN S+P+ MYGS V    L + S     
Sbjct: 169 YLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNHSNPLVMYGSEVP---LGIPSPSHTY 225

Query: 185 TLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYH 244
           TL+FGDP RKH+M CR++ K      AI+T  G+ VI  LVG+I  A  +R   V+ED  
Sbjct: 226 TLDFGDPLRKHQMVCRYRNKLHVSWSAITTPSGVFVICMLVGYIIYAAWSRYDNVKEDCR 285

Query: 245 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            M  LKK+AEAAD+AKSQFLATVSHEIRTPMNGVLGMLDML+DTEL  TQ+DY +TAQ  
Sbjct: 286 KMEALKKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQVC 345

Query: 305 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
           GKAL+SLINEVLD+AK+E+GK++LE+V F+LR+ILDDV+SLFS KS++KG+ELAVY+S+R
Sbjct: 346 GKALISLINEVLDRAKIEAGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSER 405

Query: 365 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL-----------VEEVVDSIE-- 411
           VPE L+GDPGRFRQIITNL+GNSIKFTE+GHIFV V+L           +E VV+ +   
Sbjct: 406 VPEILLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATEAKIEPVVNGMNGH 465

Query: 412 ----VETELSSSKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVED 466
               +    S S NTLSG+  AD  ++W+ FK   + + +  P++S S D + L+VSVED
Sbjct: 466 KDEAIAIPTSGSHNTLSGFEAADSRNNWENFKLLLSYEKNEMPYESDS-DKVTLVVSVED 524

Query: 467 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
           TG GIPL AQ R+FTPFMQ   S SR +GGTGIGLSISK LV  M G+I FVS P +GST
Sbjct: 525 TGIGIPLHAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFVSRPLVGST 584

Query: 527 FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
           FTFTAV       +   +S+ +   P  + S F+G+ AL+VD RP+RA V++YH+QRLGI
Sbjct: 585 FTFTAVLRRCDKNAIS-DSKTVALHP--LPSSFKGLSALLVDKRPVRATVTKYHLQRLGI 641

Query: 587 QVEVVSDQLQCLSQIAS---------GSKIINMILVEQEVW--EKDTSVSTLFVNNLRKL 635
             EVV         ++          G K   M+L+E + W  + D S+        +  
Sbjct: 642 TSEVVGTIDPTFGVLSGRNGSSLTSIGKKQPCMLLIESDSWGPQMDVSLHARLQEMKQSD 701

Query: 636 GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRN 695
                 K+FLL    S++ ++      ++ SVI KPL++S LAA L +A+G+    + + 
Sbjct: 702 RIHVLPKVFLL----SAAESDKVKKIHAVDSVIPKPLKASALAACLFQALGITQPSHEKR 757

Query: 696 WELPSM-------SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL 748
            +  S+       SL  LLLG+ IL+VDDN VNL+VAA  LK+YGA V CVE GK A  L
Sbjct: 758 DDSGSLHGRDGSGSLHGLLLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALSL 817

Query: 749 LMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL 808
           L  PH+FD C MDIQMPEMDGFEAT+ IR ME   N +    E   E     + +H+PIL
Sbjct: 818 LQVPHKFDLCLMDIQMPEMDGFEATRQIRAMEGKANEQADDSESGSEIAAKTAKWHLPIL 877

Query: 809 AMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
           AMTADVIQAT+EEC + GMDGYVSKPFE +QL++ V +F  P
Sbjct: 878 AMTADVIQATHEECTKCGMDGYVSKPFEEKQLFQAVQKFLGP 919


>gi|162461543|ref|NP_001105913.1| histidine kinase [Zea mays]
 gi|89242037|dbj|BAE80689.1| histidine kinase [Zea mays]
          Length = 996

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/871 (52%), Positives = 602/871 (69%), Gaps = 50/871 (5%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV+ ++RE FE+ QGW IK M         K EPSP ++EYAPV+++Q+TVS++  LDM+
Sbjct: 142 RVVHADREGFERHQGWIIKTM---------KHEPSPAQDEYAPVVYSQETVSYIEGLDMM 192

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LR+RASGK VLT PFRL+ +N LGV+LTF VY  +LPS+A   +R+ AT G
Sbjct: 193 SGEEDRENILRSRASGKAVLTRPFRLM-SNHLGVVLTFPVYHADLPSDAKEEDRVAATAG 251

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNV--SDDGLWLVSTLN 187
           YLGG FD+ESLVE LL QLA  Q + +NVYD+TN+S+P+ MYGS V   +     +  L+
Sbjct: 252 YLGGAFDVESLVENLLRQLAGNQELVINVYDVTNISNPLVMYGSEVPLGNPSPSHICMLD 311

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKH M CR++ K   P  AIST  G+ VI  LVG+I  A  +R   V+ED   M 
Sbjct: 312 FGDPFRKHHMVCRYRNKPHVPWSAISTPSGVFVICMLVGYIAGAAWSRYDNVKEDCRKME 371

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+DT+L  TQ+D+ +TAQ  GKA
Sbjct: 372 ELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKA 431

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L+SLINEVLD+AK+E+ KL+LE+V F+LR+ILDDV+SLFS KS++KG+EL VY+S+RVPE
Sbjct: 432 LISLINEVLDRAKIEARKLDLESVPFDLRSILDDVISLFSSKSREKGIELDVYVSERVPE 491

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL-----------VEEVVDSIEVETE- 415
            L+GDPGRFRQIITNL+GNSIKFTE+GHIFV V+L           VE V + +   T  
Sbjct: 492 ILLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATESKVEPVANGMNGHTNE 551

Query: 416 -----LSSSKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469
                 S S NTLSG+  AD  +SW+ FK   + + S  P++S S D + L+VSVEDTG 
Sbjct: 552 KTAVATSVSLNTLSGFEAADSRNSWENFKLLLSYEKSEMPYESVS-DKVTLVVSVEDTGI 610

Query: 470 GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 529
           GIPL+AQ+++FTPFMQ   S SRT+GGTGIGLSISK LV  M G+I FVS P++GSTFTF
Sbjct: 611 GIPLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTF 670

Query: 530 TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 589
           TAV       S   +S+ +   P  + S F+G+ AL+VD RP+RA V++YH+QRLGI  +
Sbjct: 671 TAVLKR-CDRSAIGDSKPVMLHP--LPSSFKGLSALLVDRRPVRATVTKYHLQRLGIACD 727

Query: 590 VVSDQLQCLSQIA--SGSKIIN-----MILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQ 640
           VV+     L  ++  +GS + +     M+L+E + W    D S+ +  +   +       
Sbjct: 728 VVATIELALGVLSGRNGSSLTSMKQPCMLLIESDSWGFNIDVSLQSRLLEMKQNGHTHVL 787

Query: 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 700
            K+ LLA    ++ +    +  ++ SVI KPL++S LAA L + +G+    N R+    S
Sbjct: 788 PKIILLA----AAESGKLKEHYAVDSVITKPLKASALAACLFQTLGIKQSSNERSDN--S 841

Query: 701 MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
            SL  LLLG+ IL+VDDN VNL+VAA  LK++GA V CVE GK A  LL  P++F  C M
Sbjct: 842 GSLYGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALLHVPYKFHLCLM 901

Query: 761 DIQMPEMDGFEATKIIREMEHNFNNR-IRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
           DIQMPEMDGFEATK IR ME   N + +   +  I+     + + +P+LAMTADVIQAT+
Sbjct: 902 DIQMPEMDGFEATKQIRAMEAKANEQAVACDDSEIDGTTRAARWRLPVLAMTADVIQATH 961

Query: 820 EECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
           EEC + GMDGYV+KPFE +QL++ + +F  P
Sbjct: 962 EECTKCGMDGYVTKPFEEKQLFQALQKFLDP 992


>gi|118790698|tpd|FAA00250.1| TPA: histidine kinase [Oryza sativa Japonica Group]
 gi|222625684|gb|EEE59816.1| hypothetical protein OsJ_12359 [Oryza sativa Japonica Group]
          Length = 1005

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/882 (52%), Positives = 597/882 (67%), Gaps = 62/882 (7%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            RV+ ++RE FE+QQGW IK M         K EPSP ++EYAPVI++Q+T+S++  LD++
Sbjct: 141  RVVHADRESFERQQGWIIKTM---------KHEPSPAQDEYAPVIYSQETISYIEGLDVM 191

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN+LRARA+GK VLT PFRL+ +N LGV+LTF VY  +LP++    +R+ AT G
Sbjct: 192  SGEEDRENILRARATGKAVLTRPFRLM-SNHLGVVLTFPVYLVDLPNDTAVEDRVAATAG 250

Query: 130  YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVS----- 184
            YLGG FD+ESLVE LL QLA  Q + VNVYD+TN S+P+ MYGS V    L + S     
Sbjct: 251  YLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNHSNPLVMYGSEVP---LGIPSPSHTY 307

Query: 185  TLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYH 244
            TL+FGDP RKH+M CR++ K      AI+T  G+ VI  LVG+I  A  +R   V+ED  
Sbjct: 308  TLDFGDPLRKHQMVCRYRNKLHVSWSAITTPSGVFVICMLVGYIIYAAWSRYDNVKEDCR 367

Query: 245  GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
             M  LKK+AEAAD+AKSQFLATVSHEIRTPMNGVLGMLDML+DTEL  TQ+DY +TAQ  
Sbjct: 368  KMEALKKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQVC 427

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
            GKAL+SLINEVLD+AK+E+GK++LE+V F+LR+ILDDV+SLFS KS++KG+ELAVY+S+R
Sbjct: 428  GKALISLINEVLDRAKIEAGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSER 487

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL-----------VEEVVDSIE-- 411
            VPE L+GDPGRFRQIITNL+GNSIKFTE+GHIFV V+L           +E VV+ +   
Sbjct: 488  VPEILLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATEAKIEPVVNGMNGH 547

Query: 412  ----VETELSSSKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVED 466
                +    S S NTLSG+  AD  ++W+ FK   + + +  P++S S D + L+VSVED
Sbjct: 548  KDEAIAIPTSGSHNTLSGFEAADSRNNWENFKLLLSYEKNEMPYESDS-DKVTLVVSVED 606

Query: 467  TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
            TG GIPL AQ R+FTPFMQ   S SR +GGTGIGLSISK LV  M G+I FVS P +GST
Sbjct: 607  TGIGIPLHAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFVSRPLVGST 666

Query: 527  FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
            FTFTAV       +   +S+ +   P  + S F+G+ AL+VD RP+RA V++YH+QRLGI
Sbjct: 667  FTFTAVLRRCDKNAIS-DSKTVALHP--LPSSFKGLSALLVDKRPVRATVTKYHLQRLGI 723

Query: 587  QVEVVSDQLQCLSQIAS---------GSKIINMILVEQEVW--EKDTSVSTLFVNNLRKL 635
              EVV         ++          G K   M+L+E + W  + D S+        +  
Sbjct: 724  TSEVVGTIDPTFGVLSGRNGSSLTSIGKKQPCMLLIESDSWGPQMDVSLHARLQEMKQSD 783

Query: 636  GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRN 695
                  K+FLL    S++ ++      ++ SVI KPL++S LAA L +A+G+    + + 
Sbjct: 784  RIHVLPKVFLL----SAAESDKVKKIHAVDSVIPKPLKASALAACLFQALGITQPSHEKR 839

Query: 696  WELPSM-------SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL 748
             +  S+       SL  LLLG+ IL+VDDN VNL+VAA  LK+YGA V CVE GK A  L
Sbjct: 840  DDSGSLHGRDGSGSLHGLLLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALSL 899

Query: 749  LMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL 808
            L  PH+FD C MDIQMPEMDGFEAT+ IR ME   N +    E   E     + +H+PIL
Sbjct: 900  LQVPHKFDLCLMDIQMPEMDGFEATRQIRAMEGKANEQADDSESGSEIAAKTAKWHLPIL 959

Query: 809  AMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
            AMTADVIQAT+EEC + GMDGYVSKPFE +QL++ V +F  P
Sbjct: 960  AMTADVIQATHEECTKCGMDGYVSKPFEEKQLFQAVQKFLGP 1001


>gi|46390553|dbj|BAD16039.1| putative histidine kinase 1 [Oryza sativa Japonica Group]
          Length = 984

 Score =  854 bits (2206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/885 (51%), Positives = 596/885 (67%), Gaps = 69/885 (7%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           R+   ERE FE QQGW +K M         K + +P ++EYAPVIF+QDTVS++  +DM+
Sbjct: 113 RIFHHEREMFENQQGWIMKTM---------KRQAAPPQDEYAPVIFSQDTVSYLARIDMM 163

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT PFRLL +N LGV+LTFAVY+  L ++A+  ER+EAT G
Sbjct: 164 SGEEDRENILRARATGKAVLTNPFRLLGSNHLGVVLTFAVYRPGLAADASVEERVEATAG 223

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDG---LWLVSTL 186
           YLGG FD+ESLVE LL +LA  Q I VNVYD+TN S P++MYG   S DG   L+ VSTL
Sbjct: 224 YLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASEPMAMYGPQ-SPDGKVSLFHVSTL 282

Query: 187 NFGDPFRKHEMRC--RFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYH 244
           +FGDPFR HEMRC  R++QK P P  AI+  +G  VI  LVG+I  A  +R  KV ED  
Sbjct: 283 DFGDPFRAHEMRCRSRYRQKPPLPWSAITNPLGTFVIWMLVGYIICAAWSRYDKVSEDCR 342

Query: 245 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVL------------GMLDMLMDTELDV 292
            M ELK +AEAADVAKSQFLATVSHEIRTPMNGVL            GMLDML+ T+L +
Sbjct: 343 KMEELKTQAEAADVAKSQFLATVSHEIRTPMNGVLVVQRSKILPFDVGMLDMLLGTDLSM 402

Query: 293 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 352
           TQ+DY +TAQ  G+AL++LIN+VLD+AK+E+GKLELEAV F+LR+++DDV+SLFS KS++
Sbjct: 403 TQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSRE 462

Query: 353 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-------E 405
           K +ELAV++ D VP+ +IGDP R+RQI+TNL+GN++KFTE+GH+FV V L E       +
Sbjct: 463 KCIELAVFVCDDVPKVVIGDPWRYRQILTNLVGNAVKFTERGHVFVRVCLAENSKVEANQ 522

Query: 406 VVDSI------EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDG-------STSPFKS 452
           V++        +VET  + + NTLSG+  AD  ++W  FK    D               
Sbjct: 523 VLNGTMNGKDGKVETTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQ 582

Query: 453 SSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 512
           +  D + L++S+EDTG GIPL AQ R+FTPFMQ   S SR +GGTGIGLSISK L   M 
Sbjct: 583 NDCDCVTLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMG 642

Query: 513 GEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPI 572
           G+I F S P +GSTFTF+AV       ++  + + ++    ++ + F+GMKA++VD RP+
Sbjct: 643 GQISFTSRPFVGSTFTFSAVLKRSCKDTSSDSKRSLS---EALPTAFKGMKAILVDGRPV 699

Query: 573 RAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI------INMILVEQEVWEKDTSVST 626
           R  V+RYH+ RLGI V+VV++    L  +A  + +      ++M+ +E ++W  +T +  
Sbjct: 700 RGAVTRYHLNRLGIVVKVVNNLSMGLQTLAGQNGVKESREKLSMLFIESDIWRPETDI-- 757

Query: 627 LFVNNLRKLGCGFQ----SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQ 682
           L +N L +L    Q     KL LL     +S A+    G +   V+ KP+R+S +A+ LQ
Sbjct: 758 LLLNRLHELKNNGQVHELPKLVLLV----TSEADKDRYGSAFDIVMYKPIRASTIASCLQ 813

Query: 683 RAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG 742
           + + V       N   PS  LR LL+G+ ILIVDDN VNL+VAAA LK+YGA V CVE G
Sbjct: 814 QLLKVVMPERKDNQNRPSF-LRSLLIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVESG 872

Query: 743 KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 802
           K A  LL  PH FDACFMD+QMPEMDGFEAT+ IR+ME   N    R  + +        
Sbjct: 873 KDAVSLLQQPHCFDACFMDVQMPEMDGFEATRQIRQMEVKANE--ERKALDLMEGSTFVE 930

Query: 803 FHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
            H+P+LAMTADVIQATYEEC++SGMDGYVSKPF+ EQLY+ VSR 
Sbjct: 931 SHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 975


>gi|162458665|ref|NP_001105857.1| histidine kinase [Zea mays]
 gi|89242031|dbj|BAE80686.1| histidine kinase [Zea mays]
          Length = 975

 Score =  853 bits (2204), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/873 (51%), Positives = 598/873 (68%), Gaps = 59/873 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV   ERE FE QQGW +  M         + EP+P + EYAPVIF+QDTVS++  +DM+
Sbjct: 118 RVFHHEREMFESQQGWIMNTM---------QREPAPPQVEYAPVIFSQDTVSYLARIDMM 168

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRAR +GK VLT PFRLL +N LGV+LTFAVY+ +LP++A+  +R+EAT G
Sbjct: 169 SGEEDRENILRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIG 228

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL--VSTLN 187
           YLGG FD+ESLVE LL +LA  Q I VNVYD+TN S  + +YG + SD+ +    VS L+
Sbjct: 229 YLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASEAMVLYGPSSSDERVPFLHVSMLD 288

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFR+HEMRCR++QK P    AI+  +G  VI  L+G+   A  +R  KV ED   M 
Sbjct: 289 FGDPFRRHEMRCRYRQKLPMQWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKME 348

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+ T+L +TQ+DY +TAQ  G+A
Sbjct: 349 ELKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRA 408

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LIN+VLD+AK+E+GKLELEAV F+LR+++DDV+SLFS KS++K +ELAV++ D VP+
Sbjct: 409 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDNVPK 468

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-------EVVDSI------EVET 414
            ++GDP RFRQI+TNL+GN++KFTE+GH+FV V L +       +V++         V++
Sbjct: 469 DVLGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLADNSNMEAGQVLNGAMNGKDGRVDS 528

Query: 415 ELSSSKNTLSGYPVADRCHSWKGFKTFNQD---------GSTSPFKSSSADLINLIVSVE 465
             + + NTLSG+  ADR +SW+ FK    D         G+ S    S +D + L +S+E
Sbjct: 529 TTNGAFNTLSGFEAADRRNSWQYFKMLLSDKESLLDDLEGTNS--DQSDSDHVTLAISIE 586

Query: 466 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 525
           DTG GIPL+AQ R+FTPFMQ   S SR +GGTGIGLSISK L   M G+I FVS P +GS
Sbjct: 587 DTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFVSRPFVGS 646

Query: 526 TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
           TFTF+          +  +S+ ++    ++ + F+GMKA+++D RP+R+ V+RYH++RLG
Sbjct: 647 TFTFSTTLKRSYKDISVDSSRSLS---EALPTAFKGMKAILIDGRPVRSAVTRYHLKRLG 703

Query: 586 IQVEVVSDQLQCLSQI--ASGSKI----INMILVEQEVWEKDTSVSTLFVNNL-----RK 634
           I V+ V++    +      +G+ +      ++ +E + W  +T V  L  N+L     R+
Sbjct: 704 ITVQAVNNMSAVVKAFPGQNGATVSREKATILFIESDFWRPETDVQLL--NHLREHKNRQ 761

Query: 635 LGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 694
           L  G +  L +      +S A+    G     V+ KP+R+SM+A+S+Q+ + V       
Sbjct: 762 LSDGHKVVLLV------TSEADKDKYGSIFDIVMCKPIRASMIASSIQQLLKVEMPERRD 815

Query: 695 NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
           N   PS  LR LL+G+ IL+VDDN VNL+VAAA LK+YGA V CVE GK A  LL PPH 
Sbjct: 816 NQNRPSF-LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHC 874

Query: 755 FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
           FDACFMD+QMPEMDGFEAT+ IR+ E   N   +   V IE    V  +H+P+LAMTADV
Sbjct: 875 FDACFMDVQMPEMDGFEATRQIRQTEMRVNEERKNKLVLIEGSTFV-EYHLPVLAMTADV 933

Query: 815 IQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
           IQATYE+C++SGMDGYVSKPF+ EQLY+ VSR 
Sbjct: 934 IQATYEKCIKSGMDGYVSKPFDEEQLYQAVSRL 966


>gi|356513022|ref|XP_003525213.1| PREDICTED: histidine kinase 4-like [Glycine max]
          Length = 1011

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/879 (52%), Positives = 605/879 (68%), Gaps = 56/879 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV+ SER  FEKQ GW IK M+          EPS + +EYAPVIFAQ+T+S++ SLDM+
Sbjct: 141 RVVNSERGTFEKQHGWVIKTMER---------EPSLVRDEYAPVIFAQETLSYLESLDMM 191

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT+PF LL ++ LGV+LTF VYK +LP   T  ERI+AT G
Sbjct: 192 SGEEDRENILRARATGKAVLTSPFNLLGSHHLGVVLTFPVYKSKLPPKPTMEERIKATAG 251

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 187
           Y+GG FD+ESLVE LL QLA  Q I VNVYDITN ++P+ MYG+   +  + LV  S L+
Sbjct: 252 YVGGSFDVESLVENLLGQLAGHQAILVNVYDITNSTNPLIMYGNQNEEGDMSLVHESKLD 311

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDP+R H M CR+ QKAP   +A++T+    VI  LVG+I     N I KVE+D+H M 
Sbjct: 312 FGDPYRNHTMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHQME 371

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+ TEL  TQ+DY +TAQA GKA
Sbjct: 372 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLKTELSSTQRDYAQTAQACGKA 431

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LINEVLD+AK+E+GKLELEAV F++R+ILDDVLSLFS KS++KG+ELAV++SD+VP+
Sbjct: 432 LIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGLELAVFVSDKVPD 491

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE------------ 415
            ++GDPGRFRQI+TNL+GNS+KFTE+GHIFV V+L E  + ++  +TE            
Sbjct: 492 IVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLSENSMSTMNGKTEKFINRGSGEPVH 551

Query: 416 LSSSKN--TLSGYPVADRCHSWKGFK------TFNQDGSTSPFKSSSADLINLIVSVEDT 467
           +S + N  TLSGY  AD  +SW  FK       F  D S     S S + + L+VSVEDT
Sbjct: 552 MSGAYNSKTLSGYEAADERNSWDNFKHLIADEEFFFDASVKKAASESYEQVTLMVSVEDT 611

Query: 468 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
           G GIP  AQ RIF PF+Q   S SR +GGTGIGLSISK LV  M GEI F+S   +GSTF
Sbjct: 612 GIGIPFSAQDRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISQLQVGSTF 671

Query: 528 TFTAVFG----NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 583
           +FTA FG    N  +   +HN + +        S F+G+KA+VVD +P+RA V+RYH++R
Sbjct: 672 SFTAGFGTIEKNAITDMKKHNLEDL-------PSNFRGLKAIVVDGKPVRAAVTRYHLKR 724

Query: 584 LGIQVEVVSDQLQCLSQIASGSKII------NMILVEQEVWE-KDTSVSTLFVNNLRKLG 636
           LGIQ +V +   + +S       +       ++I VE++ W   +  +  ++  + ++ G
Sbjct: 725 LGIQAKVANSINKAVSLCGKNGSLTSVLFQPDIIFVEKDSWVCGEDEIFNVWQLDWKQNG 784

Query: 637 CGFQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRN 695
             F+  ++ LLA +I ++  + +       +VIMKPLR+SM+AA LQ+ +G G K     
Sbjct: 785 HMFKIPQMILLATNIGNAEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQHGK 844

Query: 696 WELPSMS--LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH 753
              P+ S  +R LL G+KIL+VDDN VN +VAA  LK +GA V C E GK A E+L  PH
Sbjct: 845 DMKPNGSTLVRSLLCGKKILVVDDNVVNRRVAAGALKNFGADVTCAESGKTALEMLQLPH 904

Query: 754 QFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD 813
            FDACFMDIQMPEMDGF+AT+ IR ME   N +   GE +   +++   +H+PILAMTAD
Sbjct: 905 NFDACFMDIQMPEMDGFQATQRIRMMETKANEQQMNGEGN--GWKD--KYHIPILAMTAD 960

Query: 814 VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
           VI ATY+EC++ GMDGYVSKPFE E LY+ V++FF P P
Sbjct: 961 VIHATYDECVKYGMDGYVSKPFEEENLYQAVAKFFNPKP 999


>gi|413923913|gb|AFW63845.1| putative histidine kinase family protein [Zea mays]
          Length = 975

 Score =  852 bits (2201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/873 (51%), Positives = 598/873 (68%), Gaps = 59/873 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV   ERE FE QQGW +  M         + EP+P + EYAPVIF+QDTVS++  +DM+
Sbjct: 118 RVFHHEREMFESQQGWIMNTM---------QREPAPPQVEYAPVIFSQDTVSYLARIDMM 168

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRAR +GK VLT PFRLL +N LGV+LTFAVY+ +LP++A+  +R+EAT G
Sbjct: 169 SGEEDRENILRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIG 228

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL--VSTLN 187
           YLGG FD+ESLVE LL +LA  Q I VNVYD+TN S  + +YG + SD+ +    VS L+
Sbjct: 229 YLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASEAMVLYGPSSSDERVPFLHVSMLD 288

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFR+HEMRCR++QK P    AI+  +G  VI  L+G+   A  +R  KV ED   M 
Sbjct: 289 FGDPFRRHEMRCRYRQKLPMQWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKME 348

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+ T+L +TQ+DY +TAQ  G+A
Sbjct: 349 ELKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRA 408

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LIN+VLD+AK+E+GKLELEAV F+LR+++DDV+SLFS KS++K +ELAV++ D VP+
Sbjct: 409 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDNVPK 468

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-------EVVDSI------EVET 414
            ++GDP RFRQI+TNL+GN++KFTE+GH+FV V L +       +V++         V++
Sbjct: 469 DVLGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLADNSNMEAGQVLNGAMNGKDGRVDS 528

Query: 415 ELSSSKNTLSGYPVADRCHSWKGFKTFNQD---------GSTSPFKSSSADLINLIVSVE 465
             + + NTLSG+  ADR +SW+ FK    D         G+ S    S +D + L +S+E
Sbjct: 529 TTNGAFNTLSGFEAADRRNSWQYFKMLLSDKESLLDDLEGTNS--DQSDSDHVTLAISIE 586

Query: 466 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 525
           DTG GIPL+AQ R+FTPFMQ   S SR +GGTGIGLSISK L   M G+I FVS P +GS
Sbjct: 587 DTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFVSRPFVGS 646

Query: 526 TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
           TFTF+          +  +S+ +     ++ + F+GMKA+++D RP+R+ V+RYH++RLG
Sbjct: 647 TFTFSTTLKRSYKDISVDSSRSL---LEALPTAFKGMKAILIDGRPVRSAVTRYHLKRLG 703

Query: 586 IQVEVVSDQLQCLSQI--ASGSKI----INMILVEQEVWEKDTSVSTLFVNNL-----RK 634
           I V+VV++    +      +G+ +      ++ +E + W  +T V  L  N+L     R+
Sbjct: 704 IIVQVVNNMSAVVKAFPGQNGATVSREKATILFIESDFWRPETDVQLL--NHLREHKNRQ 761

Query: 635 LGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 694
           L  G +  L +      +S A+    G     V+ KP+R+SM+A+S+Q+ + V       
Sbjct: 762 LSDGHKVVLLV------TSEADKDKYGSIFDIVMCKPIRASMIASSIQQLLKVEMPERRN 815

Query: 695 NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
           N   PS  LR LL+G+ IL+VDDN VNL+VAAA LK+YGA V CVE GK A  LL PPH 
Sbjct: 816 NHNRPSF-LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHC 874

Query: 755 FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
           FDACFMD+QMPEMDGFEAT+ IR+ E   N   +   V IE    V  +H+P+LAMTADV
Sbjct: 875 FDACFMDVQMPEMDGFEATRQIRQTEMRVNEERKNKLVLIEGSTFV-EYHLPVLAMTADV 933

Query: 815 IQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
           IQATYE+C++SGMDGYVSKPF+ EQLY+ VSR 
Sbjct: 934 IQATYEKCIKSGMDGYVSKPFDEEQLYQAVSRL 966


>gi|357117708|ref|XP_003560605.1| PREDICTED: histidine kinase 4-like [Brachypodium distachyon]
          Length = 997

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/877 (53%), Positives = 594/877 (67%), Gaps = 58/877 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV+ ++RE FE+QQGW IK M         K EPSP+++EYAPVI++Q+TVS++  LDM+
Sbjct: 139 RVMNADRESFERQQGWIIKTM---------KHEPSPVQDEYAPVIYSQETVSYIEGLDMM 189

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LR+RA+GK VLT PFRL+ +N LGV+LTF VY  +LP +A   +R+ AT G
Sbjct: 190 SGEEDRENILRSRATGKAVLTRPFRLM-SNHLGVVLTFPVYLVDLPPDAKVEDRVAATAG 248

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNV--SDDGLWLVSTLN 187
           YLGG FD+ESLVE LL QLA  Q + VNVYD+TN S+P+ MYGS V         +  L+
Sbjct: 249 YLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNHSNPLVMYGSEVPLGAPSPSHICMLD 308

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKH M CR++ K   P  AI+T  G+ VI  LVG+I  A       V+ED   M 
Sbjct: 309 FGDPFRKHHMICRYRNKHHVPWSAITTPSGVFVICMLVGYIIYAAWTHYDNVKEDCRKME 368

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            LKK+AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+DTEL  TQ+DY +TAQ  GKA
Sbjct: 369 ALKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQVCGKA 428

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L+SLINEVLD+AK+E+ KLELE+V F+LR+ILDDV+SLFS KS +KG+ELAVY+S+RVPE
Sbjct: 429 LISLINEVLDRAKIEARKLELESVPFDLRSILDDVVSLFSSKSSEKGIELAVYVSERVPE 488

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL-----------VEEVVDSI-----E 411
            L+GDPGRFRQIITNL+GNSIKFTE+GHIFV V+L           VE VV+ I     E
Sbjct: 489 LLLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATEAKVEPVVNGINGHKDE 548

Query: 412 VETELSS-SKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469
             T  SS S NTLSG+  AD  +SW+ FK   + + +  P+ S S D + L+VSVEDTG 
Sbjct: 549 TSTISSSVSHNTLSGFEAADSRNSWENFKLLLSYETNEMPYGSES-DKVTLVVSVEDTGI 607

Query: 470 GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 529
           GIP+ AQ R+FTPFMQ   S SR +GGTGIGLSIS+ LV  M G+I FVS P +GSTFTF
Sbjct: 608 GIPIHAQDRVFTPFMQADSSTSRNYGGTGIGLSISQCLVELMGGQINFVSRPQVGSTFTF 667

Query: 530 TAVFGNGSSTSNEHNSQQMNNQP--NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 587
           TAV         E N+  ++     + + S F+G+ +L+VD RP+RA V++YH+QRLGI 
Sbjct: 668 TAVL-----QRCERNAISVSKSALLHPLPSSFKGLSSLLVDKRPVRATVTKYHLQRLGIA 722

Query: 588 VEVVSDQLQCLSQIA--SGS-------KIINMILVEQEVW--EKDTSVSTLFVNNLRKLG 636
            + V      L  ++  +GS       K I+M+L+E + W  + D  + T     L ++ 
Sbjct: 723 SKSVGTIELALGALSGRNGSLLTSMPRKQISMLLIESDSWGLKMDVPLHT----RLLEMK 778

Query: 637 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW 696
                 +F     ++S+ ++      ++ SVI KPL++S LAA L +A+G+      R  
Sbjct: 779 QNGSETVFPPVILLASAESDKMKAKYAVDSVITKPLKASTLAACLFQALGISITQAHREK 838

Query: 697 ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 756
              S  L  LLLG+ IL+VDDN VNL+VAA  LK+YGA V CVE GK A  LL  PH+FD
Sbjct: 839 HHDSSPLHGLLLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALALLQVPHKFD 898

Query: 757 ACFMDIQMPEMDGFEATKIIREME---HNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD 813
            C MDIQMPEMDGFEAT+ IR ME   H+  +     E    A    + +H+P+LAMTAD
Sbjct: 899 LCLMDIQMPEMDGFEATRQIRAMEAKAHDQEDDAYNSEADSTAKR--AEWHLPVLAMTAD 956

Query: 814 VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
           VIQAT+EEC + GMDGYVSKPFE +QL++ V +F  P
Sbjct: 957 VIQATHEECTKFGMDGYVSKPFEEKQLFQAVEKFLGP 993


>gi|108710768|gb|ABF98563.1| cytokinin receptor CRE1b, putative, expressed [Oryza sativa Japonica
            Group]
          Length = 1013

 Score =  848 bits (2190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/890 (51%), Positives = 597/890 (67%), Gaps = 70/890 (7%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            RV+ ++RE FE+QQGW IK M         K EPSP ++EYAPVI++Q+T+S++  LD++
Sbjct: 141  RVVHADRESFERQQGWIIKTM---------KHEPSPAQDEYAPVIYSQETISYIEGLDVM 191

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN+LRARA+GK VLT PFRL+ +N LGV+LTF VY  +LP++    +R+ AT G
Sbjct: 192  SGEEDRENILRARATGKAVLTRPFRLM-SNHLGVVLTFPVYLVDLPNDTAVEDRVAATAG 250

Query: 130  YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVS----- 184
            YLGG FD+ESLVE LL QLA  Q + VNVYD+TN S+P+ MYGS V    L + S     
Sbjct: 251  YLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNHSNPLVMYGSEVP---LGIPSPSHTY 307

Query: 185  TLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYH 244
            TL+FGDP RKH+M CR++ K      AI+T  G+ VI  LVG+I  A  +R   V+ED  
Sbjct: 308  TLDFGDPLRKHQMVCRYRNKLHVSWSAITTPSGVFVICMLVGYIIYAAWSRYDNVKEDCR 367

Query: 245  GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
             M  LKK+AEAAD+AKSQFLATVSHEIRTPMNGVLGMLDML+DTEL  TQ+DY +TAQ  
Sbjct: 368  KMEALKKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQVC 427

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
            GKAL+SLINEVLD+AK+E+GK++LE+V F+LR+ILDDV+SLFS KS++KG+ELAVY+S+R
Sbjct: 428  GKALISLINEVLDRAKIEAGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSER 487

Query: 365  VPETLIGDPGRFRQIITNLMGNSIK--------FTEKGHIFVTVYL-----------VEE 405
            VPE L+GDPGRFRQIITNL+GNSIK        FTE+GHIFV V+L           +E 
Sbjct: 488  VPEILLGDPGRFRQIITNLVGNSIKITIFTLSQFTERGHIFVQVHLADHSNLATEAKIEP 547

Query: 406  VVDSIE------VETELSSSKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLI 458
            VV+ +       +    S S NTLSG+  AD  ++W+ FK   + + +  P++S S D +
Sbjct: 548  VVNGMNGHKDEAIAIPTSGSHNTLSGFEAADSRNNWENFKLLLSYEKNEMPYESDS-DKV 606

Query: 459  NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 518
             L+VSVEDTG GIPL AQ R+FTPFMQ   S SR +GGTGIGLSISK LV  M G+I FV
Sbjct: 607  TLVVSVEDTGIGIPLHAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFV 666

Query: 519  SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSR 578
            S P +GSTFTFTAV       +   +S+ +   P  + S F+G+ AL+VD RP+RA V++
Sbjct: 667  SRPLVGSTFTFTAVLRRCDKNAIS-DSKTVALHP--LPSSFKGLSALLVDKRPVRATVTK 723

Query: 579  YHIQRLGIQVEVVSDQLQCLSQIAS---------GSKIINMILVEQEVW--EKDTSVSTL 627
            YH+QRLGI  EVV         ++          G K   M+L+E + W  + D S+   
Sbjct: 724  YHLQRLGITSEVVGTIDPTFGVLSGRNGSSLTSIGKKQPCMLLIESDSWGPQMDVSLHAR 783

Query: 628  FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687
                 +        K+FLL    S++ ++      ++ SVI KPL++S LAA L +A+G+
Sbjct: 784  LQEMKQSDRIHVLPKVFLL----SAAESDKVKKIHAVDSVIPKPLKASALAACLFQALGI 839

Query: 688  GNKGNIRNWELPSM-------SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVE 740
                + +  +  S+       SL  LLLG+ IL+VDDN VNL+VAA  LK+YGA V CVE
Sbjct: 840  TQPSHEKRDDSGSLHGRDGSGSLHGLLLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVE 899

Query: 741  RGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENV 800
             GK A  LL  PH+FD C MDIQMPEMDGFEAT+ IR ME   N +    E   E     
Sbjct: 900  SGKDALSLLQVPHKFDLCLMDIQMPEMDGFEATRQIRAMEGKANEQADDSESGSEIAAKT 959

Query: 801  SNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
            + +H+PILAMTADVIQAT+EEC + GMDGYVSKPFE +QL++ V +F  P
Sbjct: 960  AKWHLPILAMTADVIQATHEECTKCGMDGYVSKPFEEKQLFQAVQKFLGP 1009


>gi|356524638|ref|XP_003530935.1| PREDICTED: histidine kinase 4-like [Glycine max]
          Length = 1016

 Score =  847 bits (2187), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/879 (52%), Positives = 598/879 (68%), Gaps = 52/879 (5%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            RV+ SERE FEKQ GW IK M+          EPS + +EYAPVIF Q+T+S++ S+DM+
Sbjct: 141  RVVNSERETFEKQHGWVIKTMER---------EPSLVRDEYAPVIFVQETLSYLESIDMM 191

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN+LRARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP   T  ERI+AT G
Sbjct: 192  SGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTMEERIKATAG 251

Query: 130  YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 187
            Y+GG FD+ESLVE LL QLA  Q I VNVYDITN +  + MYG+   +  + LV  S L+
Sbjct: 252  YVGGSFDVESLVENLLGQLAGHQAILVNVYDITNSTDHLIMYGNQNEEGDMSLVHESKLD 311

Query: 188  FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
            FGD +RKH M CR+ QKAP   +A++T+    VI  LVG+I     N I KVE+D+H M 
Sbjct: 312  FGDSYRKHTMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHQME 371

Query: 248  ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            ELK +AEAA VAKSQFLATVSHEIRTPMNG+LGML +L+ TEL  TQ+DY +TAQA GKA
Sbjct: 372  ELKVRAEAAHVAKSQFLATVSHEIRTPMNGILGMLGLLLKTELSSTQRDYAQTAQACGKA 431

Query: 308  LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
            L++LINEVLD+AK+E+GKLELEAV F++R+ILDDVLSLFS KS++KG+ELAV++SD+VP+
Sbjct: 432  LIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGLELAVFVSDKVPD 491

Query: 368  TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE------------ 415
             ++GDPGRFRQI+TNL+GNS+KFTE+GH+FV V+L E  + ++  + E            
Sbjct: 492  IVMGDPGRFRQIVTNLVGNSVKFTERGHVFVKVHLSENRMSTMNGKIEKFLNGGLDEPVH 551

Query: 416  LSSSKN--TLSGYPVADRCHSWKGFK------TFNQDGSTSPFKSSSADLINLIVSVEDT 467
            +S   N  TLSGY  AD  +SW  FK       F  D S     S S + + L+VSVEDT
Sbjct: 552  MSGGYNSKTLSGYEAADERNSWDNFKHLIADEEFFYDASVKRVASESYEQVTLMVSVEDT 611

Query: 468  GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
            G GIP  AQ RIF PF+Q   S SR +GGTGIGLSISK LV  M GEI F+S P +GSTF
Sbjct: 612  GIGIPFSAQDRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISQPQVGSTF 671

Query: 528  TFTAVFG----NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 583
            +FTA FG    N  +   +HN + +        S F+G+KA+VVD +P+RA V+RYH++R
Sbjct: 672  SFTADFGTIKKNAITDMKKHNLEDL-------PSNFRGLKAIVVDGKPVRAAVTRYHLKR 724

Query: 584  LGIQVEVVSDQLQCLS------QIASGSKIINMILVEQEVWEK-DTSVSTLFVNNLRKLG 636
            LGIQ +V +   + +S       + SG    ++I VE++ W   +  +  ++  + ++  
Sbjct: 725  LGIQAKVANSFNKAVSLCGKNGCLTSGLFQPDIIFVEKDSWVCVEDGIFNVWQLDWKQNR 784

Query: 637  CGFQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRN 695
              F+  ++ LLA +I +   + +       +VIMKPLR+SM+AA LQ+ +G G K     
Sbjct: 785  HIFKIPQMILLATNIGNDEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQHGK 844

Query: 696  WELPSMS--LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH 753
               P+ S  +R LL G+KIL+VDDN VN +VAA  LK +GA V C E GK A E+L  PH
Sbjct: 845  DMNPNGSTFVRSLLCGKKILVVDDNVVNRRVAAGALKNFGADVTCAESGKTALEMLQLPH 904

Query: 754  QFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD 813
             FDACFMDIQMPEMDGFEAT+ IR ME   N +   GE           +H+PILAMTAD
Sbjct: 905  NFDACFMDIQMPEMDGFEATRQIRMMETKANEQQMNGECGEGNGWKDKKYHIPILAMTAD 964

Query: 814  VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
            VI ATY+EC++ GMDGYVSKPFE E LY+ V++FF P P
Sbjct: 965  VIHATYDECVKCGMDGYVSKPFEEENLYQAVAKFFNPKP 1003


>gi|109631214|gb|ABG35783.1| SHK279 [Striga asiatica]
          Length = 984

 Score =  842 bits (2175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/875 (52%), Positives = 595/875 (68%), Gaps = 59/875 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           R+L SEREEFE+Q GWTI+ M+          +PSP+ +EYAPVIF+Q+T+S++ SLD++
Sbjct: 135 RILLSEREEFERQHGWTIRTMEK---------KPSPVRDEYAPVIFSQETLSYLGSLDVM 185

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT PFRLL ++ LGV+LTF VYK +LP N T  ERI+AT G
Sbjct: 186 SGQEDRENILRARATGKAVLTNPFRLLNSH-LGVVLTFPVYKFKLPPNPTVEERIDATAG 244

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL--VSTLN 187
           YLGG FD+ESLVE LL QLA  Q I VNVYD TN S P+ MYG N  D  + L  VS L+
Sbjct: 245 YLGGAFDVESLVENLLGQLAGNQAIVVNVYDTTNSSDPLIMYGHNSQDGDMSLKHVSKLD 304

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKHEM CR+  +AP    A+ T+  + +I  L+G++  + V+ I KVE+D++ M 
Sbjct: 305 FGDPFRKHEMICRYLMEAPTSWHALQTAALVFMIGFLIGYMAYSAVSHIVKVEDDFNKMQ 364

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DTEL  TQ+D+ +TAQ  G+A
Sbjct: 365 ELKVQAEAADVAKSQFLATVSHEIRTPMNGILGMLQLLLDTELSSTQRDFAQTAQGCGEA 424

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LINEVLD+AK+E+GKLELEAV F+LR+ILDDVLSLFS KS+ KG+ELAV++SD+VPE
Sbjct: 425 LITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRQKGIELAVFVSDKVPE 484

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS--------- 418
            ++GDPGRFRQ+I NL+GNS+KFTE+GHIFV V+L E+   + + + E  S         
Sbjct: 485 IVVGDPGRFRQVIINLVGNSVKFTEEGHIFVQVHLAEQRKPTKDAKIETYSNGDSETTPK 544

Query: 419 ----SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLE 474
               S NTLSG  VAD C S    + F  D +     ++ ++ + L VSVEDTG GIP +
Sbjct: 545 SQSWSFNTLSGKQVADNCSSLD--EEFLYDPTRDENNNAKSESVRLTVSVEDTGIGIPEQ 602

Query: 475 AQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534
           AQ R+FTPFMQ   S SR +GGTGIGLSISK LV  M G++ F S P +GST +FT  F 
Sbjct: 603 AQKRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQMSFNSRPQVGSTSSFTVEFQ 662

Query: 535 NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 594
               +     S+ ++++ N      +G++A+V+D +P+RA V+ YH++RLGIQ E V   
Sbjct: 663 RSERSEVICLSKSISDEVNVA---LKGLRAVVIDGKPVRAAVTMYHLRRLGIQSEAVGSI 719

Query: 595 LQCLSQIAS-GS----KIINMILVEQEVW----EKDTSVSTLFVNNLRKLGCGFQSKL-- 643
              L+  A  GS    K+ +M +VE++ W    E+D  +      N      GF  KL  
Sbjct: 720 RIGLAFYAKHGSLNDEKVPDMFIVEKDAWISSEEEDGPMQLSSRQN------GFNCKLPK 773

Query: 644 -FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNK---GNIRNWELP 699
             LLA +I+ + +N S       +VIMKPLRSSM+AA LQ+ +G+G+K    + RN  + 
Sbjct: 774 MILLATNITPTESNRSKTAGFADTVIMKPLRSSMVAACLQQVLGIGHKIQNSSPRNGAIA 833

Query: 700 SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 759
               + LL G+KIL+VDDN VN +VAA  L ++GA V CV  G +A   L  PH FDACF
Sbjct: 834 KAKAKGLLRGKKILVVDDNVVNRRVAAGALNKFGAEVRCVGSGHEALACLQIPHDFDACF 893

Query: 760 MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
           MDIQMP+MDGFEAT++IREME             I  +      H+PILAMTADVI AT 
Sbjct: 894 MDIQMPQMDGFEATRLIREMESKAKMGNNNKSDGIGEWR-----HMPILAMTADVIHATL 948

Query: 820 EECLRSGMDGYVSKPFEAEQLYREVSRFF---PPI 851
           +ECL+ GMDGYV KPF+ + LY+ V++FF   PPI
Sbjct: 949 DECLKCGMDGYVPKPFKEKSLYQAVAKFFDSNPPI 983


>gi|357521451|ref|XP_003631014.1| Histidine kinase [Medicago truncatula]
 gi|355525036|gb|AET05490.1| Histidine kinase [Medicago truncatula]
          Length = 1029

 Score =  840 bits (2171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/906 (52%), Positives = 610/906 (67%), Gaps = 85/906 (9%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            RV+ SERE+FEKQ G  IK M+          E SP+ +EYAPVIFAQ+TVS++ S+DM+
Sbjct: 141  RVVNSEREQFEKQHGVVIKTMER---------EASPVRDEYAPVIFAQETVSYLESIDMM 191

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN++RARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP N T  E I+AT G
Sbjct: 192  SGEEDRENIMRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTTEELIKATAG 251

Query: 130  --------------------------YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITN 163
                                      Y+GG FD+ESLVE LL QLA  Q I VNVYD+TN
Sbjct: 252  VIDTTSIIELKKTVSVTRLVFGYILLYVGGSFDVESLVENLLGQLAGHQAILVNVYDVTN 311

Query: 164  LSHPISMYGSNVSDDGLWLV--STLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVI 221
             S P+ MYG+   +  + LV  S L+FGDP+RKH+M CR+ QKAP    A+ST+I   VI
Sbjct: 312  SSDPLIMYGNQYEEGDVSLVHESKLDFGDPYRKHQMICRYHQKAPPNWTALSTAILFFVI 371

Query: 222  ASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGM 281
              L+G+I     N I KVE+D+H M ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGM
Sbjct: 372  LLLIGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGM 431

Query: 282  LDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 341
            L +L+ TEL+ TQ+DY +TAQA GKAL++LINEVLD+AK+E+GKLELEAV F+LR+ILDD
Sbjct: 432  LGLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDD 491

Query: 342  VLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVY 401
            VLSLFS KS+ KG+ELAV++SD+VP+ ++GDPGRFRQI+TNL+GNS+KFTE+GHIFV V+
Sbjct: 492  VLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVH 551

Query: 402  LVE--EVVDSIEVET----------ELSSSKN--TLSGYPVADRCHSWKGF------KTF 441
            L E  + V + + ET            S   N  TLSGY  AD  ++W  F      + F
Sbjct: 552  LSENRKPVTNGKHETYRNGGSEEVVHASGGYNLKTLSGYEAADERNNWDNFNHLIADEEF 611

Query: 442  NQDGSTSPFKSSS-ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 500
              D ST    S+   + + L+V VEDTG GIP  AQ RIF PF+Q   S SR +GGTGIG
Sbjct: 612  FCDASTKKVASNEFYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIG 671

Query: 501  LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG----NGSSTSNEHNSQQMNNQPNSVS 556
            LSISK LV  M G+I F+S P +GSTF+FTA FG    N  +   + N + +        
Sbjct: 672  LSISKCLVELMGGQINFISRPQVGSTFSFTADFGIFKKNPITEVKKVNYEDL-------P 724

Query: 557  SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ----CLSQIASGSKII--NM 610
            S F+G+KA+VVD +P+RA V+RYH++RLGIQV+V +   +    C    AS + +   ++
Sbjct: 725  SSFRGLKAVVVDGKPVRAAVTRYHLKRLGIQVKVANAINKAVSLCGKNGASSTGLFQPDI 784

Query: 611  ILVEQEVWE-KDTSVSTLFVNNLRKLGCGFQ-SKLFLLANSISSSRANTSTDGVSIPSVI 668
            I VE++ W   +  + ++   + ++ G  F+  ++ LLA +IS+   + +       +VI
Sbjct: 785  IFVEKDSWVCGEDGIFSVRQLDWKQNGHIFKMPQMILLATNISNDEFDKAKSAGFSDTVI 844

Query: 669  MKPLRSSMLAASLQRAMGVGNKGNIRNWELP--SMSLRHLLLGRKILIVDDNNVNLKVAA 726
            MKPLR+SM+ A LQ+ +G G K  +   E+P  S S+R LL G+KIL+VDDN VN +VAA
Sbjct: 845  MKPLRASMVGACLQQVLGTGKKRQLGK-EMPNGSTSVRSLLFGKKILVVDDNVVNRRVAA 903

Query: 727  AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
              LK +GA V C + GK A E+L  PH+FDACFMDIQMPEMDGFEAT+ IREME   N  
Sbjct: 904  GALKNFGADVKCADSGKAALEMLQFPHKFDACFMDIQMPEMDGFEATRRIREMERTANE- 962

Query: 787  IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
                E + E  E  S FH+PILAMTADVI ATYEECL+ GMDGYVSKPFE E LY+ V++
Sbjct: 963  ----ETNSECGERKSEFHLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAK 1018

Query: 847  FFPPIP 852
            FF   P
Sbjct: 1019 FFQTKP 1024


>gi|168018438|ref|XP_001761753.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
            patens]
 gi|162687124|gb|EDQ73509.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
            patens]
          Length = 1022

 Score =  838 bits (2165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/894 (52%), Positives = 592/894 (66%), Gaps = 73/894 (8%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            RVL + R  FE + GWTIK M           E     +EYAP    Q+T+SH+ SLDM+
Sbjct: 143  RVLHANRNLFESKHGWTIKEM--------FSKEKQRDFDEYAPTTMTQETLSHLTSLDMM 194

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN++RAR SGKG LT PFRLL++  LGV+ TFAVY  +LP +AT  +RI+AT G
Sbjct: 195  SGQEDRENIIRARESGKGALTNPFRLLESKHLGVVFTFAVYTTDLPEDATKEDRIKATAG 254

Query: 130  YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYG-SNVSDDGLWLVSTLNF 188
            YLGG FD+E+LVE LL Q+A  Q I VNVYDITN + P+ MYG +NV       VS L+F
Sbjct: 255  YLGGAFDVETLVENLLRQMAGSQIIAVNVYDITNETMPLVMYGYTNVEKMQSTYVSDLDF 314

Query: 189  GDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMME 248
            GDP R+HEMRCRFK+ A  P  AISTSIGI VIA LVGH+  A+ NRI KVEE+     E
Sbjct: 315  GDPARRHEMRCRFKEDALPPWTAISTSIGIFVIAFLVGHMLHASRNRIDKVEENCRIFQE 374

Query: 249  LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 308
            LK +A+ A +AKSQFLATVSHEIRTPMNGVLGML ML+DT L+  Q DY +TA ASGKAL
Sbjct: 375  LKMRADDAVIAKSQFLATVSHEIRTPMNGVLGMLQMLIDTPLNPAQLDYAQTALASGKAL 434

Query: 309  VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 368
            ++LINEVLDQAK+ESG+LE E V F+LRAILDDVLSLF GKS+  G+ELAVY+S RVP+ 
Sbjct: 435  INLINEVLDQAKIESGRLEFEHVPFDLRAILDDVLSLFHGKSRASGIELAVYVSARVPKI 494

Query: 369  LIGDPGRFRQIITNLMGNSIK---------------FTEKGHIFVTVYLVEEVV------ 407
            L+GDPGRFRQIITNL+GNSIK               FTE GHIFV V+L E+V       
Sbjct: 495  LVGDPGRFRQIITNLVGNSIKVIICSKCLNLLYMSHFTEAGHIFVCVHLNEDVNMVMDGS 554

Query: 408  -----DSIEVETE-------LSSSKNTLSGYPVADRCHSWKGFKTF---NQDGSTSPFKS 452
                 D+++ E E       ++   NTLSG   AD  +SW+ F+      Q  + +   S
Sbjct: 555  GGDADDTMDGEVESAGPLNDMNYRFNTLSGRETADYRNSWEMFERLLAQEQSHNDTWSYS 614

Query: 453  SSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 512
             S+D++NL+VSVEDTG GIPL  Q R+FTPFMQ   S SR +GGTGIGLSIS+ LV  M 
Sbjct: 615  DSSDVVNLVVSVEDTGVGIPLHVQDRVFTPFMQADSSTSRNYGGTGIGLSISRCLVELMS 674

Query: 513  GEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN---QPNSVSSEFQGMKALVVDP 569
            GE+GFVS P +GSTFTFT       +   E   ++  N   Q   +++ FQGM+ LVVD 
Sbjct: 675  GEMGFVSRPKVGSTFTFTVELQRVPANIPERILREGRNSYLQTPPLTTCFQGMRVLVVDG 734

Query: 570  RPIRAKVSRYHIQRLGIQVEV---VSDQLQCLSQIAS-------GSKIINMILVEQEVWE 619
            R +R +V+R+H++RLG+QVEV   VS+  + LS +A        GS+ I MI V+++ W 
Sbjct: 735  RKVRCEVTRHHLKRLGLQVEVAHTVSEAAEILSTVADQGTCSSRGSRNIEMIFVDKDAWG 794

Query: 620  KDTSVSTLFVNNLRK-LGCGFQS--KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 676
              T +      N R  LG   QS  ++ L+A S++            + +V+ KPLR+S+
Sbjct: 795  PGTGM------NFRSLLGEMIQSMKRMVLVATSMTDMELGMVKASGFVDTVVRKPLRASL 848

Query: 677  LAASLQRAMGVGNKGNIRNWELPS--MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGA 734
            +AA L++ +GVG++   +  EL S   SL+ LL G++IL+VDDN VN KVAA  L +YGA
Sbjct: 849  IAACLKQILGVGDRSRDQEQELRSGVTSLQTLLYGKRILVVDDNPVNRKVAAGALHKYGA 908

Query: 735  AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSI 794
             V CV  G+ A + L PPH FDACFMD+QMPEMDGFEAT +IR+ E     R +     +
Sbjct: 909  QVECVYSGRAAIQKLKPPHNFDACFMDVQMPEMDGFEATGLIRKAEAAAAERGQ--AAGL 966

Query: 795  EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
              ++     HVPILAMTADVIQAT EEC+R GMDGYV+KPF+  QLY+ V++ F
Sbjct: 967  PTFKR--RLHVPILAMTADVIQATSEECMRCGMDGYVAKPFDEHQLYQAVAKHF 1018


>gi|109631212|gb|ABG35782.1| SHK300 [Striga asiatica]
          Length = 974

 Score =  838 bits (2164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/865 (51%), Positives = 589/865 (68%), Gaps = 71/865 (8%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           R+L SEREEFE+Q GWTI+ M+          EPSP+ +EYAPVIF Q+TVS++ SLD++
Sbjct: 136 RILFSEREEFERQHGWTIRTME---------KEPSPVRDEYAPVIFLQETVSYIGSLDVM 186

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP N T  ERIEAT G
Sbjct: 187 SGEEDRENILRARATGKAVLTSPFRLLNSH-LGVVLTFPVYKSKLPLNPTVEERIEATAG 245

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVS--DDGLWLVSTLN 187
           YLGG FD+ESL+E LL QLA  Q I VNVYD TN S  + MYG ++   D  L  VS L+
Sbjct: 246 YLGGPFDVESLIENLLGQLAGNQAIVVNVYDATNSSDLLIMYGHHLQHGDMSLKHVSKLD 305

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKHEM CR+ Q+AP    A+ T+  + +I  L+G++  + V+ I KVE+D++ M 
Sbjct: 306 FGDPFRKHEMVCRYLQEAPTSWHALQTAALVFMIGFLIGYMAYSAVSHIVKVEDDFNKMQ 365

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DTEL  TQ+D+ +TAQ  G+A
Sbjct: 366 ELKVQAEAADVAKSQFLATVSHEIRTPMNGILGMLQLLLDTELSSTQRDFAQTAQGCGEA 425

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LINEVLD+AK+E+GKLELEAV F+LR+ILDDVLSLFS KS+ KG+ELAV++SD+VPE
Sbjct: 426 LITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRQKGIELAVFVSDKVPE 485

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE------------ 415
            ++GDPGRFRQ+I NL+GNS+KFTE+GHIFV V+L  +   + + + E            
Sbjct: 486 IVVGDPGRFRQVIINLVGNSVKFTEEGHIFVQVHLTAQSKPTKDAKLENLSNGEAEATPK 545

Query: 416 -LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSAD------LINLIVSVEDTG 468
             S S NTLSG   AD   SW+  +  ++    +P   +  D       ++L V VEDTG
Sbjct: 546 SYSRSFNTLSGKQAADNRSSWEILRHLDEKLLYNPSSKAENDNNPKSESVSLTVCVEDTG 605

Query: 469 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 528
            GIP +AQ R+FTPFMQ   S SR +GGTGIGLSISK LV  M G + F+S+P +GSTF+
Sbjct: 606 IGIPEQAQKRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGRMSFISLPQVGSTFS 665

Query: 529 FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 588
           FT  F   S   NE N+       + ++   +G++A+VVD  P+RA V++YH++RLGIQ 
Sbjct: 666 FTVEF--QSCERNEVNNCVSKTISDELNVALKGLRAVVVDGNPVRAAVTKYHLRRLGIQA 723

Query: 589 EVVSDQLQCLSQIASGSKIINMILVEQEVW----EKDTSVSTLFVNNLRKLGCGFQSKLF 644
           E +      L  I++  K+ ++ LVE++ W    E++   +              + K+ 
Sbjct: 724 EAIGSIHAGL--ISNSGKVADIFLVEKDAWISGEEEEMPTN--------------RPKMI 767

Query: 645 LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG-NIRNWELPSMSL 703
           LLA +I+ S +  +       +V+MKPLRS M+AA LQ+ +G+  K  N R     S  L
Sbjct: 768 LLATNITPSESERAKAAGFAETVVMKPLRSRMVAACLQQVLGIDQKTQNGR-----SSGL 822

Query: 704 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 763
             LL G+KIL+VDDN VN +VAA  L ++GA V C E G +A   L  PH FDACFMDIQ
Sbjct: 823 GRLLSGKKILVVDDNVVNRRVAAGALNKFGAEVKCAESGHEALAFLQIPHDFDACFMDIQ 882

Query: 764 MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 823
           MPEMDGFEAT++IRE+           E+  +  +NV  +H+PILAMTADVI AT +ECL
Sbjct: 883 MPEMDGFEATRLIREV-----------EMKAKMEKNV-EWHMPILAMTADVIHATLDECL 930

Query: 824 RSGMDGYVSKPFEAEQLYREVSRFF 848
           + GMDGYVSKPF+ + LY+ V++FF
Sbjct: 931 KCGMDGYVSKPFQEKTLYQAVAKFF 955


>gi|88714405|gb|ABD49494.1| cytokinin receptor 1 [Physcomitrella patens]
          Length = 1075

 Score =  837 bits (2163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/906 (51%), Positives = 596/906 (65%), Gaps = 79/906 (8%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            RVL + R  FE + GWTIK M + E     +D      +EYAP    Q+T+SH+ SLDM+
Sbjct: 178  RVLHANRNLFESKHGWTIKEMFSKEK---QRDF-----DEYAPTTMTQETLSHLTSLDMM 229

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN++RAR SGKG LT PFRLL++  LGV+ TFAVY  +LP +AT  +RI+AT G
Sbjct: 230  SGQEDRENIIRARESGKGALTNPFRLLESKHLGVVFTFAVYTTDLPEDATKEDRIKATAG 289

Query: 130  YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYG-SNVSDDGLWLVSTLNF 188
            YLGG FD+E+LVE LL Q+A  Q I VNVYDITN + P+ MYG +NV       VS L+F
Sbjct: 290  YLGGAFDVETLVENLLRQMAGSQIIAVNVYDITNETMPLVMYGYTNVEKMQSTYVSDLDF 349

Query: 189  GDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMME 248
            GDP R+HEMRCRFK+ A  P  AISTSIGI VIA LVGH+  A+ NRI KVEE+     E
Sbjct: 350  GDPARRHEMRCRFKEDALPPWTAISTSIGIFVIAFLVGHMLHASRNRIDKVEENCRIFQE 409

Query: 249  LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 308
            LK +A+ A +AKSQFLATVSHEIRTPMNGVLGML ML+DT L+  Q DY +TA ASGKAL
Sbjct: 410  LKMRADDAVIAKSQFLATVSHEIRTPMNGVLGMLQMLIDTPLNPAQLDYAQTALASGKAL 469

Query: 309  VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 368
            ++LINEVLDQAK+ESG+LE E V F+LRAILDDVLSLF GKS+  G+ELAVY+S RVP+ 
Sbjct: 470  INLINEVLDQAKIESGRLEFEHVPFDLRAILDDVLSLFHGKSRASGIELAVYVSARVPKI 529

Query: 369  LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV-----------DSIEVETE-- 415
            L+GDPGRFRQIITNL+GNSIKFTE GHIFV V+L E+V            D+++ E E  
Sbjct: 530  LVGDPGRFRQIITNLVGNSIKFTEAGHIFVCVHLNEDVNMVMDGSGGDADDTMDGEVESA 589

Query: 416  -----LSSSKNTLSGYPVADRCHSWKGFKTF---NQDGSTSPFKSSSADLINLIVSVEDT 467
                 ++   NTLSG   AD  +SW+ F+      Q  + +   S S+D++NL+VSVEDT
Sbjct: 590  GPLNDMNYRFNTLSGRETADYRNSWEMFERLLAQEQSHNDTWSYSDSSDVVNLVVSVEDT 649

Query: 468  GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
            G GIPL  Q R+FTPFMQ   S SR +GGTGIGLSIS+ LV  M GE+GFVS P +GSTF
Sbjct: 650  GVGIPLHVQDRVFTPFMQADSSTSRNYGGTGIGLSISRCLVELMSGEMGFVSRPKVGSTF 709

Query: 528  TFTAVFGNGSSTSNEHNSQQMNN---QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL 584
            TFT       +   E   ++  N   Q   +++ FQGM+ LVVD R +R +V+R+H++RL
Sbjct: 710  TFTVELQRVPANIPERILREGRNSYLQTPPLTTCFQGMRVLVVDGRKVRCEVTRHHLKRL 769

Query: 585  GIQVEV-------------VSDQLQCLSQIASGSKI--INMILVEQEVWEKDTSVSTLFV 629
            G+QVEV             V+DQ  C S+ + GS    I MI V+++ W   T ++   +
Sbjct: 770  GLQVEVAHTVSEAAEILSTVADQGTCSSRGSRGSLAGNIEMIFVDKDAWGPGTGMNFRSL 829

Query: 630  NNLRKLG-CGFQS------------------------KLFLLANSISSSRANTSTDGVSI 664
                 +G  G+QS                        ++ L+A S++            +
Sbjct: 830  LGESAIGHLGYQSSRTSYQYRTSGRIPFGYPVIQSMKRMVLVATSMTDMELGMVKASGFV 889

Query: 665  PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS--MSLRHLLLGRKILIVDDNNVNL 722
             +V+ KPLR+S++AA L++ +GVG++   +  EL S   SL+ LL G++IL+VDDN VN 
Sbjct: 890  DTVVRKPLRASLIAACLKQILGVGDRSRDQEQELRSGVTSLQTLLYGKRILVVDDNPVNR 949

Query: 723  KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
            KVAA  L +YGA V CV  G+ A + L PPH FDACFMD+QMPEMDGFEAT +IR+ E  
Sbjct: 950  KVAAGALHKYGAQVECVYSGRAAIQKLKPPHNFDACFMDVQMPEMDGFEATGLIRKAEAA 1009

Query: 783  FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
               R +     +  ++     HVPILAMTADVIQAT EEC+R GMDGYV+KPF+  QLY+
Sbjct: 1010 AAERGQ--AAGLPTFKR--RLHVPILAMTADVIQATSEECMRCGMDGYVAKPFDEHQLYQ 1065

Query: 843  EVSRFF 848
             V++ F
Sbjct: 1066 AVAKHF 1071


>gi|113911570|gb|ABI48271.1| histidine kinase 1 [Lotus japonicus]
 gi|118140476|emb|CAL18381.1| cytokinin receptor 1 [Lotus japonicus]
 gi|118140478|emb|CAL18382.1| cytokinin receptor 1 [Lotus japonicus]
          Length = 993

 Score =  836 bits (2159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/874 (52%), Positives = 585/874 (66%), Gaps = 55/874 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV+ SERE FEKQ GW IK M+           PS + +EYA VIFAQ+TVS++ S+DM+
Sbjct: 140 RVVHSERERFEKQHGWVIKTMERV---------PSGVRDEYAAVIFAQETVSYLESIDMM 190

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP   T  E I+A  G
Sbjct: 191 SGEEDRENILRARATGKAVLTSPFRLLDSHHLGVVLTFPVYKSKLPPEPTTEEVIKAIAG 250

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 187
           Y+GG FD+ESLVE LL QLA  Q I V VYDITN S P+ MYGS   +  + LV  S L+
Sbjct: 251 YIGGSFDVESLVENLLGQLAGNQAILVKVYDITNSSDPLIMYGSQYEEGDMSLVHESKLD 310

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDP+RKH M CR+ Q+AP   +A +T+    VI  LVG+I  A    I KVE+DY+ M 
Sbjct: 311 FGDPYRKHHMICRYHQQAPTNWIAYTTAFLFFVILCLVGYILYAAGTHIVKVEDDYNAMQ 370

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           +LK KAEAAD+AKSQFLATVSHEIRTPMNG+LGML +L+ TEL  TQ+DY +TAQA GKA
Sbjct: 371 DLKVKAEAADIAKSQFLATVSHEIRTPMNGILGMLGLLLRTELSSTQRDYAQTAQACGKA 430

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LINEVLD+AK+E+GKLELEAV F+LR+ILDDVLSLFS KS+ KG+ELAV++SD+VP+
Sbjct: 431 LIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPD 490

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE------------ 415
            ++GDPGRFRQI+TNL+GNS+KFTE+GHIFV V+L E+   ++  + E            
Sbjct: 491 IVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAEKRQCTMNGKCETFLNGGCDDVLH 550

Query: 416 LSSSKN--TLSGYPVADRCHSWKGFK------TFNQDGSTSPFKSS-SADLINLIVSVED 466
           +S S N  TLSGY  AD  +SW  FK       F  D S     SS S + + L+VSVED
Sbjct: 551 VSGSYNLKTLSGYEAADERNSWDNFKHHIADEEFFFDASVKKLASSESYEQVTLMVSVED 610

Query: 467 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
           TG GI   AQ  IF PF+Q   S SR +GGTGIGLSISK LV  M G+I F+S P +GST
Sbjct: 611 TGIGISFSAQDSIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGST 670

Query: 527 FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
           F+FTA FG     S   + +++N +   + S F+G+KA+VVD +P+RA V+RYH++RLGI
Sbjct: 671 FSFTADFGTFKKNSTT-DMKKLNFE--DLPSSFRGLKAIVVDGKPVRAAVTRYHLKRLGI 727

Query: 587 QVEVVSDQLQCLSQIASGSKII------NMILVEQEVW--EKDTSVSTLFVNNLRKLGCG 638
           Q +V     + +S       +       ++I VE++ W   +D  +   F          
Sbjct: 728 QAKVAISINKAVSLCGKNGSLTSALFQPDIIFVEKDSWVSGEDGGIFNAFK--------- 778

Query: 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 698
              ++ LLA +I ++  + +       +VIMKPLR+SMLAA LQ+  G G          
Sbjct: 779 -MPQMILLATNICNAEFDKAKAAGFSDTVIMKPLRASMLAACLQQVFGTGKTRQFGKDMS 837

Query: 699 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
              S+R LL G+KIL+VDDN VN +VAA  LK +GA V C   GK A E+L  PH FDAC
Sbjct: 838 NGSSVRSLLCGKKILVVDDNLVNRRVAAGALKNFGADVKCAASGKAALEMLQYPHDFDAC 897

Query: 759 FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
           FMDIQMPEMDGFEAT+ IR ME   + +++    S E     S FH+PILAMTADVI AT
Sbjct: 898 FMDIQMPEMDGFEATRRIRMMEREASEQLK--SESGEENGKKSEFHMPILAMTADVIHAT 955

Query: 819 YEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
           Y++CL  GMDGYVSKPFE E LY+ V++FF   P
Sbjct: 956 YDKCLNCGMDGYVSKPFEEENLYQAVAKFFKSKP 989


>gi|413933250|gb|AFW67801.1| putative histidine kinase family protein [Zea mays]
          Length = 966

 Score =  835 bits (2158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/904 (50%), Positives = 603/904 (66%), Gaps = 83/904 (9%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV+ ++RE FE+ QGW IK M         K EPSP ++EYAPV+++Q+TVS++  LDM+
Sbjct: 79  RVVHADREGFERHQGWIIKTM---------KHEPSPAQDEYAPVVYSQETVSYIEGLDMM 129

Query: 70  SG---------------------------------KEDRENVLRARASGKGVLTAPFRLL 96
           SG                                 +EDREN+LR+RASGK VLT PFRL+
Sbjct: 130 SGEVCGDVSRSFLADGLQLFSAGVGSEPGCVSVVLQEDRENILRSRASGKAVLTRPFRLM 189

Query: 97  KTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFV 156
            +N LGV+LTF VY  +LPS+A   +R+ AT GYLGG FD+ESLVE LL QLA  Q + V
Sbjct: 190 -SNHLGVVLTFPVYHADLPSDAKEEDRVAATAGYLGGAFDVESLVENLLRQLAGNQELVV 248

Query: 157 NVYDITNLSHPISMYGSNV--SDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAIST 214
           NVYD+TN+S+P+ MYGS V   +     +  L+FGDPFRKH M CR++ K   P  AIST
Sbjct: 249 NVYDVTNISNPLVMYGSEVPLGNPSPSHICMLDFGDPFRKHHMVCRYRNKPHVPWSAIST 308

Query: 215 SIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTP 274
             G+ VI  LVG+I  A  +R   V+ED   M ELKK+AEAADVAKSQFLATVSHEIRTP
Sbjct: 309 PSGVFVICMLVGYIAGAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQFLATVSHEIRTP 368

Query: 275 MNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFN 334
           MNGVLGMLDML+DT+L  TQ+D+ +TAQ  GKAL+SLINEVLD+AK+E+ KL+LE+V F+
Sbjct: 369 MNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEARKLDLESVPFD 428

Query: 335 LRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG 394
           LR+ILDDV+SLFS KS++KG+EL VY+S+RVPE L+GDPGRFRQIITNL+GNSIKFTE+G
Sbjct: 429 LRSILDDVISLFSSKSREKGIELDVYVSERVPEILLGDPGRFRQIITNLVGNSIKFTERG 488

Query: 395 HIFVTVYL-----------VEEVVDSIEVETE------LSSSKNTLSGYPVADRCHSWKG 437
           HIFV V+L           VE V + +   T+       S S NTLSG+  AD  +SW+ 
Sbjct: 489 HIFVQVHLADHSNLATESKVEPVANGMNGHTDEKTAVATSVSLNTLSGFEAADSRNSWEN 548

Query: 438 FK-TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 496
           FK   + + +  P++S S D + L+VSVEDTG GIPL+AQ+++FTPFMQ   S SRT+GG
Sbjct: 549 FKLLLSYEKNEMPYESVS-DKVTLVVSVEDTGIGIPLDAQAKVFTPFMQADSSTSRTYGG 607

Query: 497 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS 556
           TGIGLSISK LV  M G+I FVS P++GSTFTFTAV       S   +S+ +   P  + 
Sbjct: 608 TGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAVLKR-CDRSAIGDSKPVMLHP--LP 664

Query: 557 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA--SGSKIIN----- 609
           S F+G+ AL+VD RP+RA V++YH+QRLGI  +VV+     L  ++  +GS + +     
Sbjct: 665 SSFKGLSALLVDRRPVRATVTKYHLQRLGIACDVVATIELALGVLSGRNGSSLTSMKQPC 724

Query: 610 MILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
           M+L+E + W    D S+ +  +   +        K+ LLA    ++ +    +  ++ SV
Sbjct: 725 MLLIESDSWGFNIDVSLRSRLLEMKQNGHTHVLPKIILLA----AAESGKLKEHYAVDSV 780

Query: 668 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAA 727
           I KPL++S LAA L + +G+    N R+    S SL  LLLG+ IL+VDDN VNL+VAA 
Sbjct: 781 ITKPLKASALAACLFQTLGIKQSSNERSDN--SGSLYGLLLGKNILVVDDNKVNLRVAAG 838

Query: 728 GLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787
            LK++GA V CVE GK A  LL  P++F  C MDIQMPEMDGFEATK IR ME   N + 
Sbjct: 839 TLKKFGAKVECVESGKDALALLQVPYKFHLCLMDIQMPEMDGFEATKQIRAMEAKANEQA 898

Query: 788 RRGEVS-IEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
              + S I+     + + +P+LAMTADVIQAT+EEC + GMDGYV+KPFE +QL++ + +
Sbjct: 899 VACDNSEIDGATRAARWRLPVLAMTADVIQATHEECTKCGMDGYVTKPFEEKQLFQALQK 958

Query: 847 FFPP 850
           F  P
Sbjct: 959 FLDP 962


>gi|302821913|ref|XP_002992617.1| hypothetical protein SELMODRAFT_430773 [Selaginella moellendorffii]
 gi|300139581|gb|EFJ06319.1| hypothetical protein SELMODRAFT_430773 [Selaginella moellendorffii]
          Length = 1096

 Score =  820 bits (2118), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/879 (50%), Positives = 573/879 (65%), Gaps = 94/879 (10%)

Query: 15   EREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKED 74
            +R  FE++ GW+IK M +      + DE       YAP + +Q+T++H+ S+DM+SG+ED
Sbjct: 267  QRRAFEEEMGWSIKEMRSNAPRAQNLDE-------YAPTVLSQNTLAHLASVDMMSGEED 319

Query: 75   RENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGI 134
            REN+LR+RASGKG LT+PFRLL+++ LGV+LTF VYK +LP +ATP +RI+AT G     
Sbjct: 320  RENILRSRASGKGALTSPFRLLESDHLGVVLTFTVYKTDLPDDATPAQRIQATAG----- 374

Query: 135  FDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRK 194
                         L+  QTI VNV D+TN S+P+ MYG N+ D     V  L FGDPFRK
Sbjct: 375  ------------SLSESQTIIVNVNDVTNKSNPLVMYGPNIPDGNEIEVCQLEFGDPFRK 422

Query: 195  HEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAE 254
            HEMRCRF ++A     AI+T+ GI+VI  LV  IF A  NRIAKVEEDY  M +LK +AE
Sbjct: 423  HEMRCRFNKEASVVWTAITTTFGIVVIVLLVAQIFYAAGNRIAKVEEDYRKMEDLKVRAE 482

Query: 255  AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINE 314
            +ADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQ+DY  TA  SGK L+ LINE
Sbjct: 483  SADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDSTQRDYAHTALESGKQLIKLINE 542

Query: 315  VLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG 374
            VLDQAK+ESG++ELE V F LR ILDD+L+ FS +++DKG+ELA Y+S+RVP+ ++GDP 
Sbjct: 543  VLDQAKIESGRMELETVPFKLRTILDDILTPFSAENKDKGIELAAYVSERVPDVVLGDPV 602

Query: 375  RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS---------------- 418
            R  QI+TNL+GNSIKFT++GHIFV+V+L E+V  ++  + E  S                
Sbjct: 603  RLHQIVTNLVGNSIKFTDRGHIFVSVHLEEDVKAAMSAQCEACSKQVTETQDHSDKLNTV 662

Query: 419  ----SKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 473
                S +TLSG   ADR ++W+ FK    Q+ S         D + L+ SVEDTG GIP+
Sbjct: 663  DAAGSCSTLSGLEAADRRNNWETFKLILKQEKSRLTTHKQPVDTVKLVFSVEDTGVGIPV 722

Query: 474  EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533
             AQ R+F+PFMQ   S SR +GGTGIGLSISK LV  MKGEIGFVS   +G+TF FT  F
Sbjct: 723  HAQERVFSPFMQADSSTSRNYGGTGIGLSISKCLVELMKGEIGFVSSLGVGTTFWFTVNF 782

Query: 534  GNG------SSTSNEHNSQQMNNQPNS-VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
              G      ++ S E + QQ     ++ ++++  G+KALVVD RP+R++V+RYH++RLGI
Sbjct: 783  KVGDLEALEAAHSAECSKQQRAAHSSTPLTTQLSGLKALVVDGRPVRSEVTRYHLRRLGI 842

Query: 587  QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 646
            QV+V SD    L+     SK ++MIL++++ W   T +S  + + +++ G     KL LL
Sbjct: 843  QVDVASDVSSALAH--QRSKNLDMILIDKDAWGSSTGLS--YPSKIKEAGPTLAPKLVLL 898

Query: 647  ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRN----------- 695
            A      +A  +  G S  +VI KPLR+S +A  L++A+G+  K   R            
Sbjct: 899  AFDDDEHKAKAA--GFS-DNVIKKPLRASHIANHLEKALGLDLKRRTRESSTPTSSSSDT 955

Query: 696  ------WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 749
                      S +L  LL G+ IL+VDDN VN +VAA  L++YGA V CVE G+ A E L
Sbjct: 956  SASINSGSGSSNNLHSLLTGKWILVVDDNKVNRRVAAGALQKYGARVECVESGRLAIEKL 1015

Query: 750  MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 809
             PPH+FDACFMDIQMPEMDGFEAT+ IR                   +E     HVPILA
Sbjct: 1016 EPPHKFDACFMDIQMPEMDGFEATRRIR------------------CFEKRGGSHVPILA 1057

Query: 810  MTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            MTADVIQATY+EC R GMD YVSKPFE +QLYR V++FF
Sbjct: 1058 MTADVIQATYDECRRCGMDDYVSKPFEEKQLYRAVAKFF 1096


>gi|20279446|gb|AAM18726.1|AC092548_4 putative histidine kinase [Oryza sativa Japonica Group]
          Length = 925

 Score =  818 bits (2112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/814 (54%), Positives = 576/814 (70%), Gaps = 54/814 (6%)

Query: 9   IRVLRSEREEFEKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHV 63
           ++VL SERE FE++ GW IK+M+T + + VH     K +PSP+++EYAPVIF+Q+TV H+
Sbjct: 80  LKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYAPVIFSQETVKHI 139

Query: 64  ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
           IS+DM+SGKEDR+N+LR+RA+GKG LTAPF LLK+N LGV+LTF VYK +LP +ATP ER
Sbjct: 140 ISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLGVVLTFTVYKYDLPPDATPEER 199

Query: 124 IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNV--SDDGLW 181
           IEAT GYLG  FD+ SLVE+LL QLASKQ I V +YDITN ++P  MY S+V  SDD   
Sbjct: 200 IEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDITNHTYPTKMYDSDVIASDD--L 257

Query: 182 LVSTLNFGDPFRKHEMRCRFKQKA--PWPLLAISTSIGILVIASLVGHIFQATVNRIAKV 239
            +S ++FGDP RKH M CRFK     PW  + IS+++ I+V+  LVG+I  AT+N + + 
Sbjct: 258 HISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIVL--LVGYIIYATLNSLEEA 315

Query: 240 EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 299
           E++Y  M +LK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQ+D+V 
Sbjct: 316 EDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQRDFVV 375

Query: 300 TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 359
           TAQ SGK+L++LINEVLD AK+ESGK+ELEAV F++R ILD+V+SLFS KS  KG+ELAV
Sbjct: 376 TAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAV 435

Query: 360 YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS-- 417
            +SD+VP+ LIGDP RFRQIITNL+GNS+KFTE+GHIF+ V+L+EEV   +E   + S  
Sbjct: 436 LVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPE 495

Query: 418 ------SSK-----NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 466
                 +SK     NTLSG  VA+   + + F+ F          S + D +NL+V+VED
Sbjct: 496 NIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKD-------SSDAIDSVNLLVTVED 548

Query: 467 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
           TG GI  +AQ+RIFTPFMQ   S SRT+GGTGIGLSI+K LV  M GEIGFVS P + ST
Sbjct: 549 TGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGVSST 608

Query: 527 FTFTAVFGNGSSTSNEHNSQQMNNQ-PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
           F+FTA+F       N  +   +    P     +FQGM+ALVVD R  RA+V+ YH++RLG
Sbjct: 609 FSFTAIF-----KENRKDPGDIKRYCPEPTPPDFQGMRALVVDGRCARAEVTMYHLRRLG 663

Query: 586 IQVEVVSDQLQCLSQI-----ASGSKIINMILVEQEVWEKDTSVSTL-FVNNLRKLGC-- 637
           IQ ++ +     LS +     +S    +NM+LV++E W +D+ ++    + +LR  G   
Sbjct: 664 IQCDLAATSESALSALLESCNSSVKSSLNMVLVDKEAWGEDSGLAFFRCLIDLRLKGTLK 723

Query: 638 GFQS--KLFLLANSISSSRANT-STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 694
            +Q+  K FLLA SI+ + ++     G S  + I KPLR S +AA L +A+GVG  G  R
Sbjct: 724 SWQTMPKFFLLAGSITPADSDCLRLAGYS--NSIRKPLRLSTVAACLSKALGVGLTG--R 779

Query: 695 NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
                S+ LR +L G+ IL+VDDN VN  VAA  LK+YGA V CV+ GK+A   L PPH+
Sbjct: 780 RSRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHK 839

Query: 755 FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
           FDACFMD+QMPEMDGFEAT+++R +E   N+ I+
Sbjct: 840 FDACFMDVQMPEMDGFEATRLVRSVESKINDTIQ 873


>gi|302810422|ref|XP_002986902.1| hypothetical protein SELMODRAFT_158365 [Selaginella moellendorffii]
 gi|300145307|gb|EFJ11984.1| hypothetical protein SELMODRAFT_158365 [Selaginella moellendorffii]
          Length = 905

 Score =  817 bits (2111), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/847 (51%), Positives = 572/847 (67%), Gaps = 44/847 (5%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           R+  SERE FE++ GW IK M T       K   SP + EYAP +F Q+++S++ SLDML
Sbjct: 81  RLFHSEREAFERRYGWEIKTMTT-------KKVQSP-QAEYAPAVFTQNSLSYLESLDML 132

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SGK + +N+LRAR+SGKGVLT P RLL++N LG+++TF VYK +LP +A+  ERI A+ G
Sbjct: 133 SGKANCDNILRARSSGKGVLTTPMRLLESNHLGIVVTFTVYKEDLPEDASEEERIAASAG 192

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL-VSTLNF 188
           Y+GG FD E LV  LL QLA  Q+I VNVYD+TN S P+ MYG +   +G  + V+ L+F
Sbjct: 193 YVGGAFDFELLVTNLLKQLAGSQSIIVNVYDVTNESKPLLMYGPDAYLEGRDVHVTELDF 252

Query: 189 GDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMME 248
            DP RKHE+RCRF    P    AI+TS+GILVI  LVGHI  A +NRI KVEEDY  M +
Sbjct: 253 RDPARKHEIRCRFHNPLPISWSAITTSVGILVIVFLVGHILHAAINRIQKVEEDYRRMED 312

Query: 249 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 308
           LK  AE+AD+AKSQFLATVSHEIRTPMNGVLGML MLMDT+LD TQ+DY  TA  SGK L
Sbjct: 313 LKVLAESADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDPTQRDYAGTAHESGKQL 372

Query: 309 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 368
           + LINEVLDQAK+ESG++ELE V F+LR ILDD+L LFS + +DKG+ELAV++S++VP+ 
Sbjct: 373 IKLINEVLDQAKIESGRMELEMVPFDLRTILDDILCLFSAEIKDKGIELAVFVSEKVPDV 432

Query: 369 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 428
           L+GDP R  QIITNL+GNS+KFTE+GHIFV V++ +E+  ++  E    S  NTLSG   
Sbjct: 433 LVGDPARLHQIITNLVGNSVKFTERGHIFVCVHMEDELT-TVSKEEGFDSC-NTLSGMKA 490

Query: 429 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 488
           AD   SW  FK+    G            + ++ +VEDTG GIPL AQ R+FTPFMQ   
Sbjct: 491 ADPRLSWDSFKSLV--GGLEDRNCGELTDVRIVFNVEDTGVGIPLLAQDRVFTPFMQADS 548

Query: 489 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 548
           S SR +GGTGIGLSISK LV  M+G + FVS P IG+TF F+ VF  G     E     +
Sbjct: 549 STSRNYGGTGIGLSISKCLVELMQGSMDFVSQPGIGATFRFSVVFKRGEMKMPEARYPHI 608

Query: 549 ---NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
              ++Q   ++   + M+ALVVD RP+R++++RYH+QRLG+QVEVV+D    LS  A+ S
Sbjct: 609 SPKHSQMARLTPCLKNMRALVVDGRPVRSQITRYHLQRLGMQVEVVNDIPAALSGGAN-S 667

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ-SKLFLLANS-ISSSRANTSTDGVS 663
           + ++M+LV+++ W   + +  +    L+  G  F+ +K  LLA S I +    T+  G  
Sbjct: 668 RSLDMVLVDKDSWGPGSGL--VVPQKLKDAGGRFKNAKFILLAGSAIDNEPLKTAPSG-- 723

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH-LLLGRKILIVDDNNVNL 722
             +   KP+R+S  A  L++  G G+K  +   E+   S  H LL G++IL+VDDN VN 
Sbjct: 724 FIATHHKPVRASSFATFLEKVFGFGSK-RLNGREISQGSRLHSLLSGKQILVVDDNKVNR 782

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME-H 781
           +VAA  L +YGA V CVE GK A   L P H+FDACFMD+QMPEMDGFEAT+ IRE E H
Sbjct: 783 RVAAGALTKYGARVECVESGKAAIARLQPSHEFDACFMDVQMPEMDGFEATRKIREAEGH 842

Query: 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
           +   R+                  PILAMTAD+IQAT +EC + GMDGYVSKPFE EQLY
Sbjct: 843 DCKCRL------------------PILAMTADLIQATRDECTKCGMDGYVSKPFEEEQLY 884

Query: 842 REVSRFF 848
           + V+++F
Sbjct: 885 KAVAKYF 891


>gi|110288960|gb|AAP53311.2| histidine kinase 3, putative, expressed [Oryza sativa Japonica Group]
          Length = 1186

 Score =  817 bits (2110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/814 (54%), Positives = 576/814 (70%), Gaps = 54/814 (6%)

Query: 9    IRVLRSEREEFEKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHV 63
            ++VL SERE FE++ GW IK+M+T + + VH     K +PSP+++EYAPVIF+Q+TV H+
Sbjct: 341  LKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYAPVIFSQETVKHI 400

Query: 64   ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
            IS+DM+SGKEDR+N+LR+RA+GKG LTAPF LLK+N LGV+LTF VYK +LP +ATP ER
Sbjct: 401  ISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLGVVLTFTVYKYDLPPDATPEER 460

Query: 124  IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNV--SDDGLW 181
            IEAT GYLG  FD+ SLVE+LL QLASKQ I V +YDITN ++P  MY S+V  SDD   
Sbjct: 461  IEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDITNHTYPTKMYDSDVIASDD--L 518

Query: 182  LVSTLNFGDPFRKHEMRCRFKQKA--PWPLLAISTSIGILVIASLVGHIFQATVNRIAKV 239
             +S ++FGDP RKH M CRFK     PW  + IS+++ I+V+  LVG+I  AT+N + + 
Sbjct: 519  HISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIVL--LVGYIIYATLNSLEEA 576

Query: 240  EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 299
            E++Y  M +LK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQ+D+V 
Sbjct: 577  EDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQRDFVV 636

Query: 300  TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 359
            TAQ SGK+L++LINEVLD AK+ESGK+ELEAV F++R ILD+V+SLFS KS  KG+ELAV
Sbjct: 637  TAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAV 696

Query: 360  YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS-- 417
             +SD+VP+ LIGDP RFRQIITNL+GNS+KFTE+GHIF+ V+L+EEV   +E   + S  
Sbjct: 697  LVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPE 756

Query: 418  ------SSK-----NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 466
                  +SK     NTLSG  VA+   + + F+ F          S + D +NL+V+VED
Sbjct: 757  NIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKD-------SSDAIDSVNLLVTVED 809

Query: 467  TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
            TG GI  +AQ+RIFTPFMQ   S SRT+GGTGIGLSI+K LV  M GEIGFVS P + ST
Sbjct: 810  TGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGVSST 869

Query: 527  FTFTAVFGNGSSTSNEHNSQQMNNQ-PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
            F+FTA+F       N  +   +    P     +FQGM+ALVVD R  RA+V+ YH++RLG
Sbjct: 870  FSFTAIF-----KENRKDPGDIKRYCPEPTPPDFQGMRALVVDGRCARAEVTMYHLRRLG 924

Query: 586  IQVEVVSDQLQCLSQI-----ASGSKIINMILVEQEVWEKDTSVSTL-FVNNLRKLGC-- 637
            IQ ++ +     LS +     +S    +NM+LV++E W +D+ ++    + +LR  G   
Sbjct: 925  IQCDLAATSESALSALLESCNSSVKSSLNMVLVDKEAWGEDSGLAFFRCLIDLRLKGTLK 984

Query: 638  GFQS--KLFLLANSISSSRANT-STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 694
             +Q+  K FLLA SI+ + ++     G S  + I KPLR S +AA L +A+GVG  G  R
Sbjct: 985  SWQTMPKFFLLAGSITPADSDCLRLAGYS--NSIRKPLRLSTVAACLSKALGVGLTG--R 1040

Query: 695  NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
                 S+ LR +L G+ IL+VDDN VN  VAA  LK+YGA V CV+ GK+A   L PPH+
Sbjct: 1041 RSRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHK 1100

Query: 755  FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
            FDACFMD+QMPEMDGFEAT+++R +E   N+ I+
Sbjct: 1101 FDACFMDVQMPEMDGFEATRLVRSVESKINDTIQ 1134


>gi|302792032|ref|XP_002977782.1| WOL, cytokinin response 1 [Selaginella moellendorffii]
 gi|300154485|gb|EFJ21120.1| WOL, cytokinin response 1 [Selaginella moellendorffii]
          Length = 905

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/847 (51%), Positives = 572/847 (67%), Gaps = 44/847 (5%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           R+  SERE FE++ GW IK M T       K   SP + EYAP +F Q+++S++ SLDML
Sbjct: 81  RLFHSEREAFERRYGWEIKTMTT-------KKVQSP-QAEYAPAVFTQNSLSYLESLDML 132

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SGK + +N+LRAR+SGKGVLT P RLL++N LG+++TF VYK +LP +A+  ERI A+ G
Sbjct: 133 SGKANCDNILRARSSGKGVLTTPMRLLESNHLGIVVTFTVYKEDLPEDASEEERIAASAG 192

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL-VSTLNF 188
           Y+GG FD E LV  LL QLA  Q+I VNVYD+TN S P+ MYG +   +G  + V+ L+F
Sbjct: 193 YVGGAFDFELLVTNLLKQLAGSQSIIVNVYDVTNESKPLLMYGPDAYLEGRDVHVTELDF 252

Query: 189 GDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMME 248
            DP RKHE+RCRF    P    AI+TS+GILVI  LVGHI  A +NRI KVEEDY  M +
Sbjct: 253 RDPARKHEIRCRFHNPLPISWSAITTSVGILVIVFLVGHILHAAINRIQKVEEDYRRMED 312

Query: 249 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 308
           LK  AE+AD+AKSQFLATVSHEIRTPMNGVLGML MLMDT+LD TQ+DY  TA  SGK L
Sbjct: 313 LKVLAESADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDPTQRDYAGTAHESGKQL 372

Query: 309 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 368
           + LINEVLDQAK+ESG++ELE V F+LR ILDD+L LFS + +DKG+ELAV++S++VP+ 
Sbjct: 373 IKLINEVLDQAKIESGRMELEMVPFDLRTILDDILCLFSAEIKDKGIELAVFVSEKVPDV 432

Query: 369 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 428
           L+GDP R  QIITNL+GNS+KFTE+GHIFV V++ +E+  ++  E    S  NTLSG   
Sbjct: 433 LVGDPARLHQIITNLVGNSVKFTEQGHIFVCVHMEDELT-TVSKEEGFDSC-NTLSGVKA 490

Query: 429 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 488
           AD   SW  FK+    G            + ++ +VEDTG GIPL AQ R+FTPFMQ   
Sbjct: 491 ADLRLSWDSFKSLV--GGLEDRNCGELTDVRIVFNVEDTGVGIPLLAQDRVFTPFMQADS 548

Query: 489 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 548
           S SR +GGTGIGLSISK LV  M+G + FVS P IG+TF F+ VF  G     E     +
Sbjct: 549 STSRNYGGTGIGLSISKCLVELMQGSMDFVSQPGIGATFRFSVVFKRGEMKMPEARYPHI 608

Query: 549 ---NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
              ++Q   ++   + M+ALVVD RP+R++++RYH+QRLG+QVEVV+D    LS  A+ S
Sbjct: 609 SPKHSQMARLTPCLKNMRALVVDGRPVRSQITRYHLQRLGMQVEVVNDIPSALSGGAN-S 667

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ-SKLFLLANS-ISSSRANTSTDGVS 663
           + ++M+LV+++ W   + +  +    L+  G  F+ +K  LLA S I +    T+  G  
Sbjct: 668 RSLDMVLVDKDSWGPGSGL--VVPQKLKDAGGRFKNAKFILLAGSAIDNEPLKTAPSG-- 723

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH-LLLGRKILIVDDNNVNL 722
             +   KP+R+S  A  L++  G G+K  +   E+   S  H LL G++IL+VDDN VN 
Sbjct: 724 FIATHHKPVRASSFATFLEKVFGFGSK-RLNGREISQGSRLHSLLSGKQILVVDDNKVNR 782

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME-H 781
           +VAA  L +YGA V CVE GK A   L P H+FDACFMD+QMPEMDGFEAT+ IRE E H
Sbjct: 783 RVAAGALTKYGARVECVESGKAAIARLQPSHEFDACFMDVQMPEMDGFEATRKIREAEGH 842

Query: 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
           +   R+                  PILAMTAD+IQAT +EC + GMDGYVSKPFE EQLY
Sbjct: 843 DCKCRL------------------PILAMTADLIQATRDECTKCGMDGYVSKPFEEEQLY 884

Query: 842 REVSRFF 848
           + V+++F
Sbjct: 885 KAVAKYF 891


>gi|88714407|gb|ABD49495.1| cytokinin receptor 2 [Physcomitrella patens]
          Length = 1082

 Score =  811 bits (2094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/916 (49%), Positives = 585/916 (63%), Gaps = 87/916 (9%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            RVL + R+ FE   GWTIK M +       KD     +E YAP   +Q ++S++ SLDM+
Sbjct: 178  RVLHANRKLFESAHGWTIKEMYS-------KDLQQDFDE-YAPTTMSQKSLSYLTSLDMM 229

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN++RAR  GKG LT PFRLL++  LGV+ TFAVY  +L  +A   +RI+AT G
Sbjct: 230  SGQEDRENIIRARELGKGALTKPFRLLESKHLGVVFTFAVYCTDLHDDAKKEDRIKATAG 289

Query: 130  YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYG-SNVSDDGLWLVSTLNF 188
            YLGG FD+E+LVE LL Q+A  Q I VNVYDITN + P+ MYG +NV       VS+L+F
Sbjct: 290  YLGGAFDVETLVENLLRQMAGSQIIAVNVYDITNETMPLVMYGHTNVEKSKNTYVSSLDF 349

Query: 189  GDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMME 248
            GDP R+HEMRCRFK+ A  P  AISTSIGI VIA LVGH+  A+ NRI KVEE+     E
Sbjct: 350  GDPARRHEMRCRFKEDALPPWTAISTSIGIFVIAFLVGHMLHASRNRIDKVEENCRIFQE 409

Query: 249  LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 308
            LK +A+ A +AKSQFLATVSHEIRTPMNGVLGML+ML +T L+  Q DY RTA ASGKAL
Sbjct: 410  LKMRADDAVIAKSQFLATVSHEIRTPMNGVLGMLNMLTNTRLNPAQLDYARTALASGKAL 469

Query: 309  VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 368
            ++LINEVLDQAK+ESG++ELE V F+LRAILDDVLSLF G+S+D G+ELAVY+S +VP+ 
Sbjct: 470  INLINEVLDQAKIESGRVELEHVPFDLRAILDDVLSLFHGQSRDSGIELAVYVSAKVPKI 529

Query: 369  LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV------------------VDSI 410
            L+GDPGRFRQIITNL+GNSIKFTE GHIFV V+L E+V                  V+S 
Sbjct: 530  LVGDPGRFRQIITNLVGNSIKFTEAGHIFVCVHLNEDVNNLMDGDEGEADDTLDGEVESA 589

Query: 411  EVETELSSSKNTLSGYPVADRCHSWKGFKTF-----NQDGSTSPFKSSSADL---INLIV 462
               T+++   NTLSG   AD  +SW+ F+       +          +  DL   +NL++
Sbjct: 590  GPLTDMNYRFNTLSGRETADYRNSWEMFERLLAQEKSHRSGVDQDTRNYCDLNGAVNLVI 649

Query: 463  SVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 522
            SVEDTG GIPL  Q R+F PFMQ   S SR +GGTGIGLSIS+ LV  M GE+ FVS P 
Sbjct: 650  SVEDTGVGIPLHVQDRVFMPFMQADSSTSRNYGGTGIGLSISRSLVDLMSGEMEFVSHPK 709

Query: 523  IGSTFTFTAVFGNGSSTSNEHNSQQMNN---QPNSVSSEFQGMKALVVDPRPIRAKVSRY 579
            +GSTFTFTA      +   EH  ++  N   Q   +++ FQGM+ LVVD R +R +V+R+
Sbjct: 710  VGSTFTFTAELQRVPANVPEHILREGRNCYLQTPPLTTCFQGMRVLVVDGRKVRCEVTRH 769

Query: 580  HIQRLGIQVEVVSDQLQCLSQIAS-------GSK--------IINMILVEQEVWEKDTSV 624
            H+QRLG++VEV     +    + +       GS+         I +I V+++ W   T V
Sbjct: 770  HLQRLGLRVEVAHTPGEAAELLTTTVDRGNRGSRDSQRSFATDIELIFVDKDAWGPGTWV 829

Query: 625  ------STLFVNNLRKLGCGFQS---------------------KLFLLANSISSSRANT 657
                  +  F+  L     G  S                     K+ L+A S++    + 
Sbjct: 830  NFRSLLTESFIGQLSHNQSGLTSYQYRSAAGRLPNGYPTLNSMKKMVLVATSMNEMELSV 889

Query: 658  STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS--MSLRHLLLGRKILIV 715
                  + +V+ KPLR+S++AASL+  +GVG+ G  +   L     SL++LL G++IL+V
Sbjct: 890  VKASGFVDTVVRKPLRASLVAASLEEILGVGDGGRDQGQNLQGGINSLQNLLTGKRILVV 949

Query: 716  DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI 775
            DDN VN KVAA  L +YGA V CV  G+ A + L PPH +DACFMD+QMPEMDGFEAT++
Sbjct: 950  DDNPVNRKVAAGALNKYGAQVDCVNSGRAAIQSLKPPHNYDACFMDVQMPEMDGFEATRL 1009

Query: 776  IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
            IR+ E    +  + G  S          HVPILAMTADVIQAT EEC+R GMDGYV+KPF
Sbjct: 1010 IRKAEAAAVDNWQAGRFSSFG----RRLHVPILAMTADVIQATSEECMRCGMDGYVAKPF 1065

Query: 836  EAEQLYREVSR-FFPP 850
            +   LY+ V++ FF P
Sbjct: 1066 DEHHLYQAVAKHFFGP 1081


>gi|168046338|ref|XP_001775631.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
            patens]
 gi|162673049|gb|EDQ59578.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
            patens]
          Length = 1008

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/888 (50%), Positives = 582/888 (65%), Gaps = 70/888 (7%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            RVL + R+ FE   GWTIK M +       KD     +E YAP   +Q ++S++ SLDM+
Sbjct: 143  RVLHANRKLFESAHGWTIKEMYS-------KDLQQDFDE-YAPTTMSQKSLSYLTSLDMM 194

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN++RAR  GKG LT PFRLL++  LGV+ TFAVY  +L  +A   +RI+AT G
Sbjct: 195  SGQEDRENIIRARELGKGALTKPFRLLESKHLGVVFTFAVYCTDLHDDAKKEDRIKATAG 254

Query: 130  YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYG-SNVSDDGLWLVSTLNF 188
            YLGG FD+E+LVE LL Q+A  Q I VNVYDITN + P+ MYG +NV       VS+L+F
Sbjct: 255  YLGGAFDVETLVENLLRQMAGSQIIAVNVYDITNETMPLVMYGHTNVEKSKNTYVSSLDF 314

Query: 189  GDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMME 248
            GDP R+HEMRCRFK+ A  P  AISTSIGI VIA LVGH+  A+ NRI KVEE+     E
Sbjct: 315  GDPARRHEMRCRFKEDALPPWTAISTSIGIFVIAFLVGHMLHASRNRIDKVEENCRIFQE 374

Query: 249  LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 308
            LK +A+ A +AKSQFLATVSHEIRTPMNGVLGML+ML +T L+  Q DY RTA ASGKAL
Sbjct: 375  LKMRADDAVIAKSQFLATVSHEIRTPMNGVLGMLNMLTNTRLNPAQLDYARTALASGKAL 434

Query: 309  VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 368
            ++LINEVLDQAK+ESG++ELE V F+LRAILDDVLSLF G+S+D G+ELAVY+S +VP+ 
Sbjct: 435  INLINEVLDQAKIESGRVELEHVPFDLRAILDDVLSLFHGQSRDSGIELAVYVSAKVPKI 494

Query: 369  LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV------------------VDSI 410
            L+GDPGRFRQIITNL+GNSIKFTE GHIFV V+L E+V                  V+S 
Sbjct: 495  LVGDPGRFRQIITNLVGNSIKFTEAGHIFVCVHLNEDVNNLMDGDEGEADDTLDGEVESA 554

Query: 411  EVETELSSSKNTLSGYPVADRCHSWKGFKTF-----NQDGSTSPFKSSSADL---INLIV 462
               T+++   NTLSG   AD  +SW+ F+       +          +  DL   +NL++
Sbjct: 555  GPLTDMNYRFNTLSGRETADYRNSWEMFERLLAQEKSHRSGVDQDTRNYCDLNGAVNLVI 614

Query: 463  SVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 522
            SVEDTG GIPL  Q R+F PFMQ   S SR +GGTGIGLSIS+ LV  M GE+ FVS P 
Sbjct: 615  SVEDTGVGIPLHVQDRVFMPFMQADSSTSRNYGGTGIGLSISRSLVDLMSGEMEFVSHPK 674

Query: 523  IGSTFTFTAVFGNGSSTSNEHNSQQMNN---QPNSVSSEFQGMKALVVDPRPIRAKVSRY 579
            +GSTFTFTA      +   EH  ++  N   Q   +++ FQGM+ LVVD R +R +V+R+
Sbjct: 675  VGSTFTFTAELQRVPANVPEHILREGRNCYLQTPPLTTCFQGMRVLVVDGRKVRCEVTRH 734

Query: 580  HIQRLGIQVE----------VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFV 629
            H+QRLG++V            +  +L    ++ S    I +I V+++ W   T V     
Sbjct: 735  HLQRLGLRVLPSVSCSSIFFSIFKELLIYCEVISD---IELIFVDKDAWGPGTWV----- 786

Query: 630  NNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS----IPSVIMKPLRSSMLAASLQRAM 685
             N R L    +S +  L+++ ++S        V     + +V+ KPLR+S++AASL+  +
Sbjct: 787  -NFRSLLT--ESFIGQLSHNQTTSMNEMELSVVKASGFVDTVVRKPLRASLVAASLEEIL 843

Query: 686  GVGNKGNIRNWELPS--MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGK 743
            GVG+ G  +   L     SL++LL G++IL+VDDN VN KVAA  L +YGA V CV  G+
Sbjct: 844  GVGDGGRDQGQNLQGGINSLQNLLTGKRILVVDDNPVNRKVAAGALNKYGAQVDCVNSGR 903

Query: 744  KATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNF 803
             A + L PPH +DACFMD+QMPEMDGFEAT++IR+ E    +  + G  S          
Sbjct: 904  AAIQSLKPPHNYDACFMDVQMPEMDGFEATRLIRKAEAAAVDNWQAGRFSSFG----RRL 959

Query: 804  HVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR-FFPP 850
            HVPILAMTADVIQAT EEC+R GMDGYV+KPF+   LY+ V++ FF P
Sbjct: 960  HVPILAMTADVIQATSEECMRCGMDGYVAKPFDEHHLYQAVAKHFFGP 1007


>gi|413933249|gb|AFW67800.1| putative histidine kinase family protein [Zea mays]
          Length = 806

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/813 (53%), Positives = 563/813 (69%), Gaps = 41/813 (5%)

Query: 68  MLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEAT 127
           M+SG+EDREN+LR+RASGK VLT PFRL+ +N LGV+LTF VY  +LPS+A   +R+ AT
Sbjct: 1   MMSGEEDRENILRSRASGKAVLTRPFRLM-SNHLGVVLTFPVYHADLPSDAKEEDRVAAT 59

Query: 128 DGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNV--SDDGLWLVST 185
            GYLGG FD+ESLVE LL QLA  Q + VNVYD+TN+S+P+ MYGS V   +     +  
Sbjct: 60  AGYLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNISNPLVMYGSEVPLGNPSPSHICM 119

Query: 186 LNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHG 245
           L+FGDPFRKH M CR++ K   P  AIST  G+ VI  LVG+I  A  +R   V+ED   
Sbjct: 120 LDFGDPFRKHHMVCRYRNKPHVPWSAISTPSGVFVICMLVGYIAGAAWSRYDNVKEDCRK 179

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           M ELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+DT+L  TQ+D+ +TAQ  G
Sbjct: 180 MEELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCG 239

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
           KAL+SLINEVLD+AK+E+ KL+LE+V F+LR+ILDDV+SLFS KS++KG+EL VY+S+RV
Sbjct: 240 KALISLINEVLDRAKIEARKLDLESVPFDLRSILDDVISLFSSKSREKGIELDVYVSERV 299

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL-----------VEEVVDSIEVET 414
           PE L+GDPGRFRQIITNL+GNSIKFTE+GHIFV V+L           VE V + +   T
Sbjct: 300 PEILLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATESKVEPVANGMNGHT 359

Query: 415 E------LSSSKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDT 467
           +       S S NTLSG+  AD  +SW+ FK   + + +  P++S S D + L+VSVEDT
Sbjct: 360 DEKTAVATSVSLNTLSGFEAADSRNSWENFKLLLSYEKNEMPYESVS-DKVTLVVSVEDT 418

Query: 468 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
           G GIPL+AQ+++FTPFMQ   S SRT+GGTGIGLSISK LV  M G+I FVS P++GSTF
Sbjct: 419 GIGIPLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTF 478

Query: 528 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 587
           TFTAV       S   +S+ +   P  + S F+G+ AL+VD RP+RA V++YH+QRLGI 
Sbjct: 479 TFTAVLKR-CDRSAIGDSKPVMLHP--LPSSFKGLSALLVDRRPVRATVTKYHLQRLGIA 535

Query: 588 VEVVSDQLQCLSQIA--SGSKIIN-----MILVEQEVW--EKDTSVSTLFVNNLRKLGCG 638
            +VV+     L  ++  +GS + +     M+L+E + W    D S+ +  +   +     
Sbjct: 536 CDVVATIELALGVLSGRNGSSLTSMKQPCMLLIESDSWGFNIDVSLRSRLLEMKQNGHTH 595

Query: 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 698
              K+ LLA    ++ +    +  ++ SVI KPL++S LAA L + +G+    N R+   
Sbjct: 596 VLPKIILLA----AAESGKLKEHYAVDSVITKPLKASALAACLFQTLGIKQSSNERSDN- 650

Query: 699 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
            S SL  LLLG+ IL+VDDN VNL+VAA  LK++GA V CVE GK A  LL  P++F  C
Sbjct: 651 -SGSLYGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALLQVPYKFHLC 709

Query: 759 FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVS-IEAYENVSNFHVPILAMTADVIQA 817
            MDIQMPEMDGFEATK IR ME   N +    + S I+     + + +P+LAMTADVIQA
Sbjct: 710 LMDIQMPEMDGFEATKQIRAMEAKANEQAVACDNSEIDGATRAARWRLPVLAMTADVIQA 769

Query: 818 TYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
           T+EEC + GMDGYV+KPFE +QL++ + +F  P
Sbjct: 770 THEECTKCGMDGYVTKPFEEKQLFQALQKFLDP 802


>gi|168053506|ref|XP_001779177.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
            patens]
 gi|162669436|gb|EDQ56023.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
            patens]
          Length = 1123

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/934 (49%), Positives = 570/934 (61%), Gaps = 109/934 (11%)

Query: 10   RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
            RVL + R  FE   GWTIK M + E             +EYAP   +Q+TV ++ SLDM+
Sbjct: 200  RVLHANRAMFELTHGWTIKEMFSKERQQDF--------DEYAPTTMSQETVFYLTSLDMM 251

Query: 70   SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
            SG+EDREN++RAR SGKG LT PFRLL++  LGV+ TFAVY  +LP +AT  +RI+AT G
Sbjct: 252  SGQEDRENIIRARESGKGALTNPFRLLESKHLGVVFTFAVYSTDLPFDATKEDRIKATAG 311

Query: 130  --------------------------------------YLGGIFDIESLVEKLLHQLASK 151
                                                  YLGG FD+E+LVE LL Q+A  
Sbjct: 312  LQIGNRIILVQYMESSRTSCTITWKLCLNFLGIHDCRSYLGGAFDVETLVENLLRQMAGS 371

Query: 152  QTIFVNVYDITNLSHPISMYG-SNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLL 210
            Q I VNVYDITN + P+ MYG +NV       VS L+FGDP R HEMRCRFK+ A  P  
Sbjct: 372  QIIAVNVYDITNDTMPLVMYGHTNVERSDNTYVSLLDFGDPLRNHEMRCRFKEDALPPWT 431

Query: 211  AISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHE 270
            AISTSIGI VIA LVGH+  A+ NRI KVEE+     ELK +A+ A +AKSQFLATVSHE
Sbjct: 432  AISTSIGIFVIAFLVGHMLHASRNRIDKVEENCRIFQELKMRADDAVIAKSQFLATVSHE 491

Query: 271  IRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEA 330
            IRTPMNGVLGML MLMDT L+ TQ DY RTAQASGKAL++LINEVLDQAK+ESG+LELE 
Sbjct: 492  IRTPMNGVLGMLQMLMDTPLNSTQLDYARTAQASGKALITLINEVLDQAKIESGRLELEH 551

Query: 331  VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKF 390
            V F+LRAILDDVLSLF GKS+  G+ELAVY+S++VP+ LIGDPGRFRQII NL+GNSIKF
Sbjct: 552  VPFDLRAILDDVLSLFHGKSRASGIELAVYVSEKVPKILIGDPGRFRQIIINLVGNSIKF 611

Query: 391  TEKGHIFVTVYLVEEV------------------VDSIEVETELSSSKNTLSGYPVADRC 432
            TE GHIFV V+L E+V                  V+S     E     NTLSG   AD  
Sbjct: 612  TEAGHIFVCVHLNEDVNMVMGWDGGDADDTLDGEVESARPLIEKGHQFNTLSGRETADLR 671

Query: 433  HSWKGF-------KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
            +SW+ F       +++   G    +   S D++ L+VSVEDTG GIPL  Q R+FTPFMQ
Sbjct: 672  NSWEMFERLLTQEQSYRSAGDRETWNYDSNDVVELVVSVEDTGVGIPLHVQDRVFTPFMQ 731

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               S SRT+GGTGIGLSIS+ LV  M GE+ FVS P +GSTFTFTA F    +   E   
Sbjct: 732  ADSSTSRTYGGTGIGLSISRCLVELMSGEMDFVSSPGVGSTFTFTAEFQRVPANVPESIL 791

Query: 546  QQMNN---QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA 602
            ++ +N   Q   + + FQGM+ LVVD R +    S      L   V V        +   
Sbjct: 792  REGSNCLLQTPPLPTCFQGMRVLVVDGRQVEVAHSVPEAAELLTTV-VNRGSRGTRNSRG 850

Query: 603  SGSKIINMILVEQEVWEKDTSV------------STLFVNNLR----------KLGCGFQ 640
            S S  I MI V+++ W   T +            S    +N R          +L  GFQ
Sbjct: 851  SISADIEMIFVDKDAWGPGTGMNFRSLLSECYMESPSSYHNARASYQYRLTAGRLPIGFQ 910

Query: 641  ----SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW 696
                 K+ L+A S++            + +VI KPLR+S++AA L++ +GVG+ G     
Sbjct: 911  VHSMQKMVLVATSMNGLELEMVKASGFVDTVIRKPLRASLVAACLKQILGVGD-GRDPGQ 969

Query: 697  ELPS--MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
            EL     SL++LL G++IL+VDDN VN KVAA  L +YGA V CV  G+ A + L PPH 
Sbjct: 970  ELRGGVNSLQNLLSGKRILVVDDNPVNRKVAAGALNKYGAQVECVHSGRAAIQKLKPPHN 1029

Query: 755  FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
            FDACFMD+QMPEMDGF+AT +IR+ E    ++     +          FHVPILAMTADV
Sbjct: 1030 FDACFMDVQMPEMDGFQATGLIRKAETLAADQWLAAGLPTFGVR----FHVPILAMTADV 1085

Query: 815  IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            IQAT EEC+R GMDGYV+KPF+  QLY+ V++ F
Sbjct: 1086 IQATSEECMRCGMDGYVAKPFDEHQLYQAVAKHF 1119


>gi|449518427|ref|XP_004166243.1| PREDICTED: histidine kinase 4-like, partial [Cucumis sativus]
          Length = 756

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/759 (52%), Positives = 518/759 (68%), Gaps = 39/759 (5%)

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 187
           YLGG FD+ESLVE LL QLA  Q I VNVYD+TN S P+ MYG    D  + L   S L+
Sbjct: 1   YLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNYSDPLVMYGHQYEDGDMSLSHESKLD 60

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKH+M CR+ QKAP    A++T+    VI  LVG+I       I KVE+D+H M 
Sbjct: 61  FGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQ 120

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAAD+AKSQFLATVSHEIRTPMNG+LGML +L+DTEL  TQ+DY +TAQA GKA
Sbjct: 121 ELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKA 180

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LINEVLD+AK+E+GKLELEAV F+LR ILDDVLSLFS KS+ KGVELAV++SD+VPE
Sbjct: 181 LIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPE 240

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN------ 421
            ++GDPGRFRQ+ITNL+GNS+KFTE GHIFV V L E+ + S  +++E   + N      
Sbjct: 241 IVMGDPGRFRQVITNLVGNSVKFTEHGHIFVKVQLAEQSMVSTNIKSETHVNGNSEDGAS 300

Query: 422 -------TLSGYPVADRCHSWKGFK-----TFNQDGSTSPFKSSS-ADLINLIVSVEDTG 468
                  TLSG+  AD  +SW  FK      F  +GS++   ++  +D++ +++SVEDTG
Sbjct: 301 HNKHQFETLSGFEAADNQNSWDTFKHLANEEFQPNGSSNLMATNEISDIVTVMISVEDTG 360

Query: 469 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 528
            GIPL AQ R+F  FMQ   S SR +GGTGIGL ISK LV  M G+I FVS P +GSTF+
Sbjct: 361 IGIPLSAQGRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQINFVSKPQVGSTFS 420

Query: 529 FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 588
           FTAVFG     +   N ++ N +   + S F+G+KA+VVD +P+RA V++YH++RLGI V
Sbjct: 421 FTAVFGRCEKKATV-NIKKSNLE--ELPSAFRGLKAVVVDGKPVRAAVTKYHLKRLGILV 477

Query: 589 EVVSD-----QLQCLSQIASGSKII--NMILVEQEVW---EKDTSVSTLFVNNLRKLGCG 638
           EV S       L   +     S I+  ++IL+E++++   E+  S + L   + ++ G  
Sbjct: 478 EVASSVKMAAALWGKNGSVRSSNILQPDVILLEKDIFISNEECGSSNLLHQLDWKQNGHT 537

Query: 639 FQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI-RNW 696
            +  KL LLA  +S+   + + +     ++IMKPLR+SM+ A LQ+ +G G K  + ++ 
Sbjct: 538 LKLPKLILLATCMSTVEFDKAKEMGFSDTLIMKPLRASMIGACLQQVLGSGKKRQLGKDM 597

Query: 697 ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 756
              S  L+ LL G+KIL+VDDN VN +VAA  LK++GA V CVE GK A  LL  PH FD
Sbjct: 598 ANGSNFLKGLLCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGKAALALLQLPHSFD 657

Query: 757 ACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 816
           ACFMDIQMPEMDGFEAT+ IR ME   N  + R E + +       +HVPILAMTADVI 
Sbjct: 658 ACFMDIQMPEMDGFEATRRIRMMESKENEVLIR-ESNGKENARKDEWHVPILAMTADVIH 716

Query: 817 ATYEECLRSGMDGYVSKPFEAEQLYREVSRFF--PPIPD 853
           ATY+ECL+ GMDGYVSKPFE E LY+ V++FF   PI D
Sbjct: 717 ATYDECLKCGMDGYVSKPFEEENLYQAVAKFFNTKPITD 755


>gi|357521453|ref|XP_003631015.1| Histidine kinase [Medicago truncatula]
 gi|355525037|gb|AET05491.1| Histidine kinase [Medicago truncatula]
          Length = 760

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/760 (52%), Positives = 519/760 (68%), Gaps = 50/760 (6%)

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 187
           Y+GG FD+ESLVE LL QLA  Q I VNVYD+TN S P+ MYG+   +  + LV  S L+
Sbjct: 9   YVGGSFDVESLVENLLGQLAGHQAILVNVYDVTNSSDPLIMYGNQYEEGDVSLVHESKLD 68

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDP+RKH+M CR+ QKAP    A+ST+I   VI  L+G+I     N I KVE+D+H M 
Sbjct: 69  FGDPYRKHQMICRYHQKAPPNWTALSTAILFFVILLLIGYILYGAGNHIVKVEDDFHEMQ 128

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+ TEL+ TQ+DY +TAQA GKA
Sbjct: 129 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKA 188

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LINEVLD+AK+E+GKLELEAV F+LR+ILDDVLSLFS KS+ KG+ELAV++SD+VP+
Sbjct: 189 LIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPD 248

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE--EVVDSIEVET----------E 415
            ++GDPGRFRQI+TNL+GNS+KFTE+GHIFV V+L E  + V + + ET           
Sbjct: 249 IVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLSENRKPVTNGKHETYRNGGSEEVVH 308

Query: 416 LSSSKN--TLSGYPVADRCHSWKGF------KTFNQDGSTSPFKSSS-ADLINLIVSVED 466
            S   N  TLSGY  AD  ++W  F      + F  D ST    S+   + + L+V VED
Sbjct: 309 ASGGYNLKTLSGYEAADERNNWDNFNHLIADEEFFCDASTKKVASNEFYEQVTLMVCVED 368

Query: 467 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
           TG GIP  AQ RIF PF+Q   S SR +GGTGIGLSISK LV  M G+I F+S P +GST
Sbjct: 369 TGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGST 428

Query: 527 FTFTAVFG----NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 582
           F+FTA FG    N  +   + N + +        S F+G+KA+VVD +P+RA V+RYH++
Sbjct: 429 FSFTADFGIFKKNPITEVKKVNYEDL-------PSSFRGLKAVVVDGKPVRAAVTRYHLK 481

Query: 583 RLGIQVEVVSDQLQ----CLSQIASGSKII--NMILVEQEVW-EKDTSVSTLFVNNLRKL 635
           RLGIQV+V +   +    C    AS + +   ++I VE++ W   +  + ++   + ++ 
Sbjct: 482 RLGIQVKVANAINKAVSLCGKNGASSTGLFQPDIIFVEKDSWVCGEDGIFSVRQLDWKQN 541

Query: 636 GCGFQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 694
           G  F+  ++ LLA +IS+   + +       +VIMKPLR+SM+ A LQ+ +G G K  + 
Sbjct: 542 GHIFKMPQMILLATNISNDEFDKAKSAGFSDTVIMKPLRASMVGACLQQVLGTGKKRQLG 601

Query: 695 NWELP--SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 752
             E+P  S S+R LL G+KIL+VDDN VN +VAA  LK +GA V C + GK A E+L  P
Sbjct: 602 K-EMPNGSTSVRSLLFGKKILVVDDNVVNRRVAAGALKNFGADVKCADSGKAALEMLQFP 660

Query: 753 HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA 812
           H+FDACFMDIQMPEMDGFEAT+ IREME   N      E + E  E  S FH+PILAMTA
Sbjct: 661 HKFDACFMDIQMPEMDGFEATRRIREMERTANE-----ETNSECGERKSEFHLPILAMTA 715

Query: 813 DVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
           DVI ATYEECL+ GMDGYVSKPFE E LY+ V++FF   P
Sbjct: 716 DVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFQTKP 755


>gi|413951478|gb|AFW84127.1| putative histidine kinase family protein [Zea mays]
          Length = 564

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/570 (61%), Positives = 436/570 (76%), Gaps = 15/570 (2%)

Query: 281 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
           ML MLMDT+LD TQQDYVRTAQASGKALVSLINEVLDQAK+ESGKLELEAV F+LR + D
Sbjct: 1   MLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEAVPFDLRTVCD 60

Query: 341 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
           D+LSLF GK+Q+KG+ELAV++SD+VP+ LIGDPGR RQIITNL+GNSIKFTEKGHI++TV
Sbjct: 61  DILSLFCGKAQEKGLELAVFVSDQVPQALIGDPGRIRQIITNLVGNSIKFTEKGHIYLTV 120

Query: 401 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS--PFKSSSADLI 458
           ++VEE+++ +EVET  + S NTLSGYPVA+R  SW+ F+ F+++ ++S  PF   ++D I
Sbjct: 121 HVVEEIMNCLEVETG-TQSANTLSGYPVANRKRSWENFRVFSRELNSSEMPFAPIASDSI 179

Query: 459 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 518
           +LI+SVEDTG GIP +AQSR+FTPFMQVGPSI+R HGGTGIGLSISK LVG M+GEIGF 
Sbjct: 180 SLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGEIGFA 239

Query: 519 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSR 578
           S P +GSTFTFTAV     S+ NE+            SSEF+G+ ALVVD RP+RAKV+R
Sbjct: 240 SKPQVGSTFTFTAVLTRAHSSRNENK-----------SSEFKGINALVVDHRPVRAKVTR 288

Query: 579 YHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638
           YH+QRLG+Q E+ +D  Q +S+I  GS+I  ++L+++E W K++    L V  LR     
Sbjct: 289 YHLQRLGVQTELTTDLDQYISKINCGSQIAKLVLIDKETWLKESHSMPLLVTKLRNKDQP 348

Query: 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 698
             +KLFLL N  S++++N+        +VIMKPLR+SML  SL RA+G  +K + RN  L
Sbjct: 349 DSTKLFLLENPKSTAKSNSHIFREFNLNVIMKPLRASMLQVSLHRALGGIDKLHCRNGVL 408

Query: 699 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
            + +L  LL  ++IL+VDDN VNLKVAA  LK+YGA V C + GKKA   L PPH FDAC
Sbjct: 409 GNSTLGSLLHKKRILVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITQLKPPHSFDAC 468

Query: 759 FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
           FMDIQMPEMDGFEATK IR ME + N +I RGE   E    +  +  PILAMTADVIQAT
Sbjct: 469 FMDIQMPEMDGFEATKRIRVMERDLNEQIERGEAPPEC-AGLRQWRTPILAMTADVIQAT 527

Query: 819 YEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           +E+CL+S MDGYVSKPFE EQLYREV+RFF
Sbjct: 528 HEQCLKSEMDGYVSKPFEGEQLYREVARFF 557


>gi|27311849|gb|AAO00890.1| histidine kinase-like protein [Arabidopsis thaliana]
 gi|30725488|gb|AAP37766.1| At5g35750 [Arabidopsis thaliana]
          Length = 652

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/667 (54%), Positives = 462/667 (69%), Gaps = 29/667 (4%)

Query: 197 MRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAA 256
           M CRFK K P P  AI+ SI +LVI  LVG+I    +NRIA VEED   M ELK +AEAA
Sbjct: 1   MHCRFKHKLPIPWTAITPSILVLVITFLVGYILYEAINRIATVEEDCQKMRELKARAEAA 60

Query: 257 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVL 316
           D+AKSQFLATVSHEIRTPMNGVLGML MLMDT+LD  Q DY +TA  SGK L SLINEVL
Sbjct: 61  DIAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVL 120

Query: 317 DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 376
           DQAK+ESG+LELE V F++R ILD+V SL SGK+ +KG+ELAVY+S +VP+ ++GDP RF
Sbjct: 121 DQAKIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDPSRF 180

Query: 377 RQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL---------SSSKNTLSGY 426
           RQIITNL+GNSIKFT E+GHIF++V+L +EV + + +E  +         S S  T+SG+
Sbjct: 181 RQIITNLVGNSIKFTQERGHIFISVHLADEVKEPLTIEDAVLKQRLALGCSESGETVSGF 240

Query: 427 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 486
           P  +   SWK FKT          +S ++D I L+V+VEDTG GIP++AQ RIFTPFMQ 
Sbjct: 241 PAVNAWGSWKNFKTCYST------ESQNSDQIKLLVTVEDTGVGIPVDAQGRIFTPFMQA 294

Query: 487 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 546
             S SRT+GGTGIGLSISK LV  M+GE+GFVS P IGSTF+FT VFG   + ++    +
Sbjct: 295 DSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTGVFGKAETNTSITKLE 354

Query: 547 QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
           +     +    EF G++ALV+D R IRA+V+RY ++RLGI  ++VS      +   S  +
Sbjct: 355 RF----DLAIQEFTGLRALVIDNRNIRAEVTRYELRRLGISADIVSSLRMACTCCISKLE 410

Query: 607 IINMILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQSKLFLLANSIS-SSRANTSTDGVS 663
            + MIL++++ W K+  + +  LF  +  K+      K+FLLA S + + R+   + G+ 
Sbjct: 411 NLAMILIDKDAWNKEEFSVLDELFTRS--KVTFTRVPKIFLLATSATLTERSEMKSTGL- 467

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 723
           I  V++KPLR S+L   LQ  +  G K   R       +L HLL  ++IL+VDDN VN +
Sbjct: 468 IDEVVIKPLRMSVLICCLQETLVNGKK---RQPNRQRRNLGHLLREKQILVVDDNLVNRR 524

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           VA   LK+YGA V CVE GK A  +L PPH FDACFMD+QMPEMDGFEAT+ +RE+E   
Sbjct: 525 VAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDGFEATRRVRELEREI 584

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
           N +I  GEVS E +   S++HVPILAMTADVIQAT+EEC++ GMDGYVSKPFE E LY  
Sbjct: 585 NKKIASGEVSAEMFCKFSSWHVPILAMTADVIQATHEECMKCGMDGYVSKPFEEEVLYTA 644

Query: 844 VSRFFPP 850
           V+RFF P
Sbjct: 645 VARFFEP 651


>gi|28916441|gb|AAO59549.1| histidine kinase [Oryza sativa Indica Group]
          Length = 497

 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 290/503 (57%), Positives = 370/503 (73%), Gaps = 15/503 (2%)

Query: 348 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 407
           GK+Q+KG+ELAVY+SD+VP+ LIGDPGR RQIITNL+GNSIKFTE+GHI++TV++VEEV+
Sbjct: 1   GKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERGHIYLTVHVVEEVM 60

Query: 408 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD--GSTSPFKSSSADLINLIVSVE 465
             +EVET + ++ NTLSGYPVA+R  SW+  + FN++   S   F   ++D I+L++SVE
Sbjct: 61  SCLEVETGIQNT-NTLSGYPVANRRRSWESIRLFNRELHSSEKSFAPIASDSISLVISVE 119

Query: 466 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 525
           DTG GIP EAQSR+FTPFMQVGPSI+R HGGTGIGLSISK LVG MKGEIGF S P++GS
Sbjct: 120 DTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGS 179

Query: 526 TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
           TFTFTAV        N+  S           SEF+G+ ALVVD RP+RAKV++YH+QRLG
Sbjct: 180 TFTFTAVLMRAHCKGNDIKS-----------SEFKGINALVVDHRPVRAKVTKYHLQRLG 228

Query: 586 IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 645
           ++ E+ ++  Q +S++ SGS    ++L+++E W K++  + L VN LR        KLFL
Sbjct: 229 VKTELTAELNQFISKLNSGSLTAKLVLIDKETWLKESHCTPLLVNKLRNNDKPDSPKLFL 288

Query: 646 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH 705
           L +S SS +  + T      +VIMKPLR+SML  SL+RA+G  +K + RN  + + +L  
Sbjct: 289 LGSSASSPKGGSDTSREHNLNVIMKPLRASMLQVSLRRALGGVDKVHCRNGVVGNSTLGS 348

Query: 706 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 765
           LL  ++I++VDDN VNLKVAA  LK+YGA V C + GKKA  LL PPH FDACFMDIQMP
Sbjct: 349 LLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMP 408

Query: 766 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 825
           EMDGFEAT+ IR ME + N RI RGE   E   ++  +  PILAMTADVIQAT+EECL+S
Sbjct: 409 EMDGFEATRRIRVMERDLNERIERGEAPPEC-ASIQRWRTPILAMTADVIQATHEECLKS 467

Query: 826 GMDGYVSKPFEAEQLYREVSRFF 848
            MDGYVSKPFE EQLY EV+RFF
Sbjct: 468 EMDGYVSKPFEGEQLYSEVARFF 490


>gi|297610356|ref|NP_001064436.2| Os10g0362300 [Oryza sativa Japonica Group]
 gi|255679337|dbj|BAF26350.2| Os10g0362300 [Oryza sativa Japonica Group]
          Length = 598

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 311/594 (52%), Positives = 406/594 (68%), Gaps = 41/594 (6%)

Query: 280 GMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAIL 339
           GML MLMDTELD TQ+D+V TAQ SGK+L++LINEVLD AK+ESGK+ELEAV F++R IL
Sbjct: 12  GMLQMLMDTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDIL 71

Query: 340 DDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVT 399
           D+V+SLFS KS  KG+ELAV +SD+VP+ LIGDP RFRQIITNL+GNS+KFTE+GHIF+ 
Sbjct: 72  DNVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIR 131

Query: 400 VYLVEEVVDSIEVETELS--------SSKNT-----LSGYPVADRCHSWKGFKTFNQDGS 446
           V+L+EEV   +E   + S        +SKNT     LSG  VA+   + + F+ F     
Sbjct: 132 VHLIEEVKRKMEALDDTSPENIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKD--- 188

Query: 447 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKY 506
                S + D +NL+V+VEDTG GI  +AQ+RIFTPFMQ   S SRT+GGTGIGLSI+K 
Sbjct: 189 ----SSDAIDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKR 244

Query: 507 LVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ-PNSVSSEFQGMKAL 565
           LV  M GEIGFVS P + STF+FTA+F       N  +   +    P     +FQGM+AL
Sbjct: 245 LVELMGGEIGFVSKPGVSSTFSFTAIF-----KENRKDPGDIKRYCPEPTPPDFQGMRAL 299

Query: 566 VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI-----ASGSKIINMILVEQEVWEK 620
           VVD R  RA+V+ YH++RLGIQ ++ +     LS +     +S    +NM+LV++E W +
Sbjct: 300 VVDGRCARAEVTMYHLRRLGIQCDLAATSESALSALLESCNSSVKSSLNMVLVDKEAWGE 359

Query: 621 DTSVSTL-FVNNLRKLGC--GFQS--KLFLLANSISSSRANT-STDGVSIPSVIMKPLRS 674
           D+ ++    + +LR  G    +Q+  K FLLA SI+ + ++     G S  + I KPLR 
Sbjct: 360 DSGLAFFRCLIDLRLKGTLKSWQTMPKFFLLAGSITPADSDCLRLAGYS--NSIRKPLRL 417

Query: 675 SMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGA 734
           S +AA L +A+GVG  G  R     S+ LR +L G+ IL+VDDN VN  VAA  LK+YGA
Sbjct: 418 STVAACLSKALGVGLTG--RRSRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGA 475

Query: 735 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSI 794
            V CV+ GK+A   L PPH+FDACFMD+QMPEMDGFEAT+++R +E   N+ I+ GEVS 
Sbjct: 476 IVTCVDSGKEAISRLQPPHKFDACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSS 535

Query: 795 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           E Y N +++HVPILAMTADVIQAT+E C+  GMDGYV+KPFE +QLY  V+ F 
Sbjct: 536 EIYGNKAHWHVPILAMTADVIQATFEGCMECGMDGYVAKPFEEQQLYSAVAHFL 589


>gi|28916434|gb|AAO59548.1| histidine kinase [Oryza sativa Indica Group]
          Length = 488

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 284/494 (57%), Positives = 361/494 (73%), Gaps = 15/494 (3%)

Query: 357 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 416
           LAVY+SD+VP+ LIGDPGR RQIITNL+GNSIKFTE+GHI++TV++VEEV+  +EVET +
Sbjct: 1   LAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERGHIYLTVHVVEEVMSCLEVETGI 60

Query: 417 SSSKNTLSGYPVADRCHSWKGFKTFNQD--GSTSPFKSSSADLINLIVSVEDTGQGIPLE 474
            ++ NTLSGYPVA+R  SW+  + FN++   S   F   ++D I+L++SVEDTG GIP E
Sbjct: 61  QNT-NTLSGYPVANRRRSWESIRLFNRELHSSEKSFAPIASDSISLVISVEDTGVGIPFE 119

Query: 475 AQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534
           AQSR+FTPFMQVGPSI+R HGGTGIGLSISK LVG MKGEIGF S P++GSTFTFTAV  
Sbjct: 120 AQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLM 179

Query: 535 NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 594
                 N+  S           SEF+G+ ALVVD RP+RAKV++YH+QRLG++ E+ ++ 
Sbjct: 180 RAHCKGNDIKS-----------SEFKGINALVVDHRPVRAKVTKYHLQRLGVKTELTAEL 228

Query: 595 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 654
            Q +S++ SGS    ++L+++E W K++  + L VN LR        KLFLL +S SS +
Sbjct: 229 NQFISKLNSGSLTAKLVLIDKETWLKESHCTPLLVNKLRNNDKPDSPKLFLLGSSASSPK 288

Query: 655 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILI 714
             + T      +VIMKPLR+SML  SL+RA+G  +K + RN  + + +L  LL  ++I++
Sbjct: 289 GGSDTSREHNLNVIMKPLRASMLQVSLRRALGGVDKVHCRNGVVGNSTLGSLLHKKQIIV 348

Query: 715 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATK 774
           VDDN VNLKVAA  LK+YGA V C + GKKA  LL PPH FDACFMDIQMPEMDGFEAT+
Sbjct: 349 VDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATR 408

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
            IR ME + N RI RGE   E   ++  +  PILAMTADVIQAT+EECL+S MDGYVSKP
Sbjct: 409 RIRVMERDLNERIERGEAPPEC-ASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKP 467

Query: 835 FEAEQLYREVSRFF 848
           FE EQLY EV+RFF
Sbjct: 468 FEGEQLYSEVARFF 481


>gi|194706202|gb|ACF87185.1| unknown [Zea mays]
          Length = 438

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/441 (56%), Positives = 314/441 (71%), Gaps = 15/441 (3%)

Query: 410 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS--PFKSSSADLINLIVSVEDT 467
           +EVET  +   NTLSGYPVA+R  SW+ F+ F+++ ++S  PF   ++D I+L++SVEDT
Sbjct: 4   LEVETG-TQYTNTLSGYPVANRKRSWENFRLFSRELNSSEMPFAPIASDSISLMISVEDT 62

Query: 468 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
           G GIP +AQSR+FTPFMQVGPSI+R HGGTGIGLSISK LVG MKGEIGF S P +GSTF
Sbjct: 63  GAGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFSSKPQVGSTF 122

Query: 528 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 587
           TFTAV     S+ NE+ S           SEF+ + ALVVD RP+RAKV++YH+QRLG+Q
Sbjct: 123 TFTAVLTRVHSSRNENKS-----------SEFKEINALVVDHRPVRAKVTKYHLQRLGVQ 171

Query: 588 VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLA 647
            E+ +D  Q +S+   GS+I  ++L+++E W K++    L V  LR       +KLFLL 
Sbjct: 172 TELTTDLDQYISKNNCGSQIAKLVLIDKETWLKESHSMPLLVTKLRNKDQPDSTKLFLLE 231

Query: 648 NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL 707
           N  SS ++N+        +VIMKPLR+SML  SLQRA+G  +K + RN  + + +L  LL
Sbjct: 232 NPKSSVKSNSHIFREYNLNVIMKPLRASMLQVSLQRALGGIDKLHCRNGVVGNSTLGSLL 291

Query: 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
             ++I++VDDN VNLKVAA  LK+YGA V C + GK+A  LL PPH FDACFMDIQMPEM
Sbjct: 292 HKKRIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKEAITLLKPPHNFDACFMDIQMPEM 351

Query: 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
           DGFEATK IR ME + N +I RGE   E    V  +  PILAMTADVIQAT+E+CL+S M
Sbjct: 352 DGFEATKRIRVMERDLNEQIERGEAPPECV-GVRQWRTPILAMTADVIQATHEQCLKSEM 410

Query: 828 DGYVSKPFEAEQLYREVSRFF 848
           DGYVSKPFE EQLYREV+RFF
Sbjct: 411 DGYVSKPFEGEQLYREVARFF 431


>gi|413938769|gb|AFW73320.1| putative histidine kinase family protein [Zea mays]
          Length = 505

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/392 (58%), Positives = 299/392 (76%), Gaps = 11/392 (2%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV   ERE FE QQGW +  M         + EP+P + EYAPVIF+QDTVS++  +DM+
Sbjct: 117 RVFHHEREMFESQQGWVMNTM---------QREPAPPQVEYAPVIFSQDTVSYLARIDMM 167

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+ RAR +GK VLT PFRLL +N LGV+LTFAVY+ +LP++A+  +R+EAT G
Sbjct: 168 SGEEDRENIFRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIG 227

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL--VSTLN 187
           YLGG FD+ESLVE LL +LA  Q I VNVYD+TN S  + +YG +  D+ +    VS L+
Sbjct: 228 YLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLD 287

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           FGDPFRKHEMRCR++QK P P  AI+  +G  VI  L+G+   A  +R  KV ED   M 
Sbjct: 288 FGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKME 347

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+ T+L +TQ+DY +TAQ  G+A
Sbjct: 348 ELKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRA 407

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++LIN+VLD+AK+E+GKLELEAV F+LR+++DDV+SLFS KS++K +ELAV++ D VP+
Sbjct: 408 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPK 467

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVT 399
            +IGDP RFRQI+TNL+GN++K + +    V+
Sbjct: 468 VVIGDPWRFRQILTNLVGNAVKVSSQFWYLVS 499


>gi|225429946|ref|XP_002281288.1| PREDICTED: histidine kinase 3-like [Vitis vinifera]
          Length = 337

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/333 (68%), Positives = 265/333 (79%)

Query: 523 IGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 582
           I +    T VF  G S SNE+  Q  NNQ N+VSSEFQGM ALVVDP P+RAKVSR+HIQ
Sbjct: 4   IANPSKVTTVFSGGCSISNEYKCQPTNNQSNAVSSEFQGMAALVVDPNPVRAKVSRHHIQ 63

Query: 583 RLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642
           RLGI VEV SD  Q  S I+SG+  IN +LVE +VW+KD+++S LFVN L+KL      K
Sbjct: 64  RLGIHVEVTSDLNQVFSGISSGNTAINRVLVEHDVWDKDSNLSALFVNKLKKLDLEVPPK 123

Query: 643 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS 702
           LFLLANSISS+R + +  GV   +VIMKPLR+ MLAASLQRA+GVGNKG  +N E PS+S
Sbjct: 124 LFLLANSISSTRNSAAISGVYNSTVIMKPLRAGMLAASLQRALGVGNKGVCQNGEHPSLS 183

Query: 703 LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 762
           LR LL GRKIL+VDDNNVNL+VAA  LK+YGA +VC + GK A  LL PPH FDACFMDI
Sbjct: 184 LRSLLRGRKILVVDDNNVNLRVAAGALKKYGADMVCADSGKSAIPLLKPPHDFDACFMDI 243

Query: 763 QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 822
           QMPEMDGFEAT IIREME N N+RI+ GEVS+EAY N+SN+H+PILAMTADVIQAT+EEC
Sbjct: 244 QMPEMDGFEATGIIREMERNVNSRIQHGEVSVEAYANISNWHLPILAMTADVIQATHEEC 303

Query: 823 LRSGMDGYVSKPFEAEQLYREVSRFFPPIPDRS 855
           LR GMDG+VSKPFEAEQLYREVSRFF P P+++
Sbjct: 304 LRCGMDGHVSKPFEAEQLYREVSRFFQPPPEQN 336


>gi|63095199|gb|AAY32330.1| AHK1 [Phyllostachys praecox]
          Length = 409

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/409 (55%), Positives = 290/409 (70%), Gaps = 22/409 (5%)

Query: 131 LGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL--VSTLNF 188
           LGG FD+ESLVE LL +LA  Q I VNVYD+TN   P+ MYG    D  + L  VS L+ 
Sbjct: 1   LGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNALEPMVMYGPQSPDGKVLLLHVSMLDL 60

Query: 189 GDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMME 248
           GDPFR+HEMRCR+ QK P P  AI+  +G  VI  LVG+I  A  +R  KV ED   M E
Sbjct: 61  GDPFRRHEMRCRYWQKPPMPWSAITNPLGTFVIWMLVGYIICAAWSRYDKVSEDCRKMEE 120

Query: 249 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 308
           LK +AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+ T+L +TQ+D+ +TAQ  G+AL
Sbjct: 121 LKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTLTQKDHAQTAQMCGRAL 180

Query: 309 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 368
           ++LIN+VLD+AK+E+GKLELEAV F+LR+++DDV+SLFS KS++K +ELAV++ D VPE 
Sbjct: 181 ITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPEV 240

Query: 369 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-------EVVDSI------EVETE 415
           +IGDP RFRQI+TNL+GN++KFTE+GH+FV V L E       +V++        ++E+ 
Sbjct: 241 VIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNVEDDQVLNGTLNGKDGKIEST 300

Query: 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGST-------SPFKSSSADLINLIVSVEDTG 468
            + + NTLSG+  AD  +SW+ FK    D  +            + +D + L++S+EDTG
Sbjct: 301 ANGALNTLSGFQAADERNSWEYFKLLLSDKESLLDELEGEKSNQNDSDSVTLMISIEDTG 360

Query: 469 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 517
            GIPL AQ R+FTPFMQ   S SR +GGTGIGLSISK L   M G+I F
Sbjct: 361 VGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 409


>gi|222623641|gb|EEE57773.1| hypothetical protein OsJ_08314 [Oryza sativa Japonica Group]
          Length = 891

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/522 (45%), Positives = 326/522 (62%), Gaps = 42/522 (8%)

Query: 356 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-------EVVD 408
           +LAV++ D VP+ +IGDP R+RQI+TNL+GN++KFTE+GH+FV V L E       +V++
Sbjct: 373 QLAVFVCDDVPKVVIGDPWRYRQILTNLVGNAVKFTERGHVFVRVCLAENSKVEANQVLN 432

Query: 409 SI------EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS-------TSPFKSSSA 455
                   +VET  + + NTLSG+  AD  ++W  FK    D               +  
Sbjct: 433 GTMNGKDGKVETTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQNDC 492

Query: 456 DLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEI 515
           D + L++S+EDTG GIPL AQ R+FTPFMQ   S SR +GGTGIGLSISK L   M G+I
Sbjct: 493 DCVTLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 552

Query: 516 GFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAK 575
            F S P +GSTFTF+AV       ++  + + ++    ++ + F+GMKA++VD RP+R  
Sbjct: 553 SFTSRPFVGSTFTFSAVLKRSCKDTSSDSKRSLSE---ALPTAFKGMKAILVDGRPVRGA 609

Query: 576 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI------INMILVEQEVWEKDTSVSTLFV 629
           V+RYH+ RLGI V+VV++    L  +A  + +      ++M+ +E ++W  +T +  L +
Sbjct: 610 VTRYHLNRLGIVVKVVNNLSMGLQTLAGQNGVKESREKLSMLFIESDIWRPETDI--LLL 667

Query: 630 NNLRKLGCGFQ----SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685
           N L +L    Q     KL LL     +S A+    G +   V+ KP+R+S +A+ LQ+ +
Sbjct: 668 NRLHELKNNGQVHELPKLVLLV----TSEADKDRYGSAFDIVMYKPIRASTIASCLQQLL 723

Query: 686 GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA 745
            V       N   PS  LR LL+G+ ILIVDDN VNL+VAAA LK+YGA V CVE GK A
Sbjct: 724 KVVMPERKDNQNRPSF-LRSLLIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVESGKDA 782

Query: 746 TELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 805
             LL  PH FDACFMD+QMPEMDGFEAT+ IR+ME   N    R  + +         H+
Sbjct: 783 VSLLQQPHCFDACFMDVQMPEMDGFEATRQIRQMEVKANE--ERKALDLMEGSTFVESHL 840

Query: 806 PILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
           P+LAMTADVIQATYEEC++SGMDGYVSKPF+ EQLY+ VSR 
Sbjct: 841 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 882



 Score =  288 bits (738), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 151/280 (53%), Positives = 188/280 (67%), Gaps = 28/280 (10%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           R+   ERE FE QQGW +K M         K + +P ++EYAPVIF+QDTVS++  +DM+
Sbjct: 113 RIFHHEREMFENQQGWIMKTM---------KRQAAPPQDEYAPVIFSQDTVSYLARIDMM 163

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRARA+GK VLT PFRLL +N LGV+LTFAVY+  L ++A+  ER+EAT G
Sbjct: 164 SGEEDRENILRARATGKAVLTNPFRLLGSNHLGVVLTFAVYRPGLAADASVEERVEATAG 223

Query: 130 ---------------YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSN 174
                          YLGG FD+ESLVE LL +LA  Q I VNVYD+TN S P++MYG  
Sbjct: 224 CLVVVVSSNQIPTNRYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASEPMAMYGPQ 283

Query: 175 VSDDG---LWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQA 231
            S DG   L+ VSTL+FGDPFR HEMRCR++QK P P  AI+  +G  VI  LVG+I  A
Sbjct: 284 -SPDGKVSLFHVSTLDFGDPFRAHEMRCRYRQKPPLPWSAITNPLGTFVIWMLVGYIICA 342

Query: 232 TVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEI 271
             +R  KV ED   M ELK +AEAADVAKSQ    V  ++
Sbjct: 343 AWSRYDKVSEDCRKMEELKTQAEAADVAKSQLAVFVCDDV 382


>gi|13129468|gb|AAK13126.1|AC083945_1 Histidine-kinase like protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/489 (48%), Positives = 316/489 (64%), Gaps = 41/489 (8%)

Query: 357 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 416
           +AV +SD+VP+ LIGDP RFRQIITNL+GNS+KFTE+GHIF+ V+L+EEV   +E   + 
Sbjct: 1   MAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDT 60

Query: 417 SSSK-------------NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 463
           S                NTLSG  VA+   + + F+ F          S + D +NL+V+
Sbjct: 61  SPENIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKD-------SSDAIDSVNLLVT 113

Query: 464 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 523
           VEDTG GI  +AQ+RIFTPFMQ   S SRT+GGTGIGLSI+K LV  M GEIGFVS P +
Sbjct: 114 VEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGV 173

Query: 524 GSTFTFTAVFGNGSSTSNEHNSQQMNNQ-PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 582
            STF+FTA+F       N  +   +    P     +FQGM+ALVVD R  RA+V+ YH++
Sbjct: 174 SSTFSFTAIF-----KENRKDPGDIKRYCPEPTPPDFQGMRALVVDGRCARAEVTMYHLR 228

Query: 583 RLGIQVEVVSDQLQCLSQI-----ASGSKIINMILVEQEVWEKDTSVSTL-FVNNLRKLG 636
           RLGIQ ++ +     LS +     +S    +NM+LV++E W +D+ ++    + +LR  G
Sbjct: 229 RLGIQCDLAATSESALSALLESCNSSVKSSLNMVLVDKEAWGEDSGLAFFRCLIDLRLKG 288

Query: 637 C--GFQS--KLFLLANSISSSRANT-STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG 691
               +Q+  K FLLA SI+ + ++     G S  + I KPLR S +AA L +A+GVG  G
Sbjct: 289 TLKSWQTMPKFFLLAGSITPADSDCLRLAGYS--NSIRKPLRLSTVAACLSKALGVGLTG 346

Query: 692 NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 751
             R     S+ LR +L G+ IL+VDDN VN  VAA  LK+YGA V CV+ GK+A   L P
Sbjct: 347 --RRSRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQP 404

Query: 752 PHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMT 811
           PH+FDACFMD+QMPEMDGFEAT+++R +E   N+ I+ GEVS E Y N +++HVPILAMT
Sbjct: 405 PHKFDACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHWHVPILAMT 464

Query: 812 ADVIQATYE 820
           ADVIQAT+E
Sbjct: 465 ADVIQATFE 473


>gi|168061325|ref|XP_001782640.1| sensory histidine protein kinase [Physcomitrella patens subsp.
            patens]
 gi|162665873|gb|EDQ52543.1| sensory histidine protein kinase [Physcomitrella patens subsp.
            patens]
          Length = 1123

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 307/942 (32%), Positives = 470/942 (49%), Gaps = 129/942 (13%)

Query: 3    RTRLLLIRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSH 62
            RT +   RVL S+R EFE++   TI  +    +    K  P+   +EYAPV+F  + V  
Sbjct: 200  RTLVYCERVLASQRSEFERKYNATI--VTILPNGTRWKRGPA---DEYAPVVFQTEDVD- 253

Query: 63   VISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNE 122
            +   D  S     E +++AR +G   L+ P     T ++G  L +    ++  S  +   
Sbjct: 254  LYMYDAGSSPILDEALVKARDTGLFTLSPPSPRQSTFQMGAYLAYYGPGKDSRSFLSAAA 313

Query: 123  RIEATDGYLGGIFDIESLVEKLLHQ-LASKQTIFVNVYDITNLSHPISMYGSNVSDDGL- 180
            R  A  GY+  + DI  +   +L + +A++    V VY++   + P   Y  + +     
Sbjct: 314  RKSACVGYVATVLDIVEVFGAVLSRFIANEDMDVVAVYNVDPNTTPHVSYNCSTTLKPCV 373

Query: 181  -------------------WLVSTLNFGDPFRKHEMRC---------RFKQKAPWPLLAI 212
                               W V + NF       E+RC          F+    WPLL  
Sbjct: 374  LPLFDPANRSKEHSDVFVAWEVGSQNF-------ELRCLPRSNMKLLAFRSVVAWPLLLA 426

Query: 213  STSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKK-------AEAADVAKSQFLA 265
               +   +I  LV       + R+  +E+D   M ++  K       AEAA+ AKS FLA
Sbjct: 427  MVVLFCAIIVYLV-------LKRMLVIEKDVSLMEKVNAKLTAATMAAEAAEKAKSSFLA 479

Query: 266  TVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 325
            TVSHEIRTPMNGV+GM ++LM TEL+  Q++YV+ AQASGKAL++LIN+VLD +K+E+GK
Sbjct: 480  TVSHEIRTPMNGVIGMTNLLMGTELNAQQREYVKIAQASGKALLALINDVLDLSKIEAGK 539

Query: 326  LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMG 385
            +E+E+V  ++R   D++ S    K  +  +E+   I D VP  L+GDP R RQI+ NL+ 
Sbjct: 540  MEVESVKLDIRNEFDEIFSFLDEKDSNNHLEMVALIHDAVPSCLMGDPTRIRQILFNLVS 599

Query: 386  NSIKFTEKGHIFVTVYLVEEV-VDSI----EVETELSSSK-------NTLSGYPVADRCH 433
            NS+KFT++G IF+ V +++    D +    EV  +LS SK       N     P +    
Sbjct: 600  NSMKFTKQGSIFICVRMLDSCHSDRLHPPPEVIYDLSRSKLFFLGSVNNTQVVPKSPSGS 659

Query: 434  SWKGF-----KTFNQDGST----------------SPFKSSSA----------------- 455
               G       T  + GST                 P  S  A                 
Sbjct: 660  DTTGMVGSDRDTICRGGSTRLSEMHLVAPRLSMVPGPLSSREAVAAWRRWEPKRSVETTE 719

Query: 456  -DLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGE 514
             + + L++SVEDTG  +PL   +R+F PF+Q   S SR +GGTG+GLSI K L   MKG+
Sbjct: 720  SNPVTLVISVEDTGIDVPLHLHNRLFQPFLQADSSSSREYGGTGVGLSICKKLAMLMKGD 779

Query: 515  IGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM---NNQPNSVSSEFQGMKALVVDPRP 571
            +   S P  GS F  T   G        ++S      + +P   S + +G + ++VD  P
Sbjct: 780  LTVSSNPGEGSVFELTVTLGRAPQPKCSNSSGCCTTPDQRPPLESEKLRGFRVILVDTHP 839

Query: 572  IRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLF 628
            +R +    +++RLG+ VE   D    L+ + +  + S    +I+V Q V   D  + T+ 
Sbjct: 840  VRQEAYASYLRRLGVVVEETEDLDGTLELVRRKENSSSAQAIIVVLQGV---DREL-TME 895

Query: 629  VNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 688
            +    +   G+++ L ++A + +       T G S  S I KPLR + +A  L +A+GV 
Sbjct: 896  IGQRVRTEPGYET-LPIIALTCTPLPDELKTAGYS--STIFKPLRHATVATILLQALGVR 952

Query: 689  NKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL 748
             + + +    P+     LL G+++L+VDDN VN +VA + L RYGA VV V  G +A   
Sbjct: 953  FQMSTKKVA-PN---PKLLTGKRLLVVDDNMVNRRVATSMLARYGATVVKVNGGMEAVNA 1008

Query: 749  L---MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 805
            +    P   +D   MDIQMPEMDG+EAT+ IR++E     +    E S E ++   + H+
Sbjct: 1009 VRNQKPDEAYDLVLMDIQMPEMDGYEATRQIRKLEIENCEQCADSEASEELFK-CFHHHL 1067

Query: 806  PILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
            PI+A+TADV+  T+E C  +GMD Y+SKP + +QLY  +  F
Sbjct: 1068 PIVAVTADVMNGTHELCFDAGMDDYISKPLDQKQLYSLLEHF 1109


>gi|168028033|ref|XP_001766533.1| CKI3b AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
            patens]
 gi|162682178|gb|EDQ68598.1| CKI3b AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
            patens]
          Length = 1098

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 286/884 (32%), Positives = 451/884 (51%), Gaps = 118/884 (13%)

Query: 48   EEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTF 107
            EEY PV      +S +  LD+      R ++ +AR SG   L+AP+ + +   L  + +F
Sbjct: 213  EEYTPVFLQSANIS-MFMLDIFGYPIFRSSLTQARDSGNFSLSAPY-VNEGKELWRMGSF 270

Query: 108  AVYKRELPSNA--TPNERIEATDGYLGGIFDIESLVEKLLH-------QLASKQTIFVN- 157
              Y  E+  +   T   R  +  GY+  +  ++    ++          L    T  VN 
Sbjct: 271  LPYYGEVDPDTLKTVEARRASCVGYVVTVLSVQERSYEVYPLGRFKDPDLDISATAKVNP 330

Query: 158  ------VYDITNLSHP--ISMYGSNVSDDGLWLVSTLNFGDPFRKH----EMRCRF---- 201
                   Y+ +  ++P  +  YG+++   GL  V     G PF       E++C +    
Sbjct: 331  SLGLNAYYNCSVDANPCEVRFYGNHLKSKGLEAV-----GVPFSYGSLDIELQCWYNHNI 385

Query: 202  -----KQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAA 256
                 ++   WPLL ++  +   V   LV     A    + K E+ +  +   K KAEAA
Sbjct: 386  RLHVLREMIAWPLLMLAMVVFCTVAVYLVLKKMSAAEIDVDKREKIHAQLRAAKLKAEAA 445

Query: 257  DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVL 316
            D AKS FLATVSHEIRTPMNGV+GM ++LM T+L   Q +YV+ AQASG ALV+LI++VL
Sbjct: 446  DTAKSSFLATVSHEIRTPMNGVIGMTNLLMGTDLSPQQLEYVKIAQASGNALVALISDVL 505

Query: 317  DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 376
            D +K+E+G++E+E V F++R  LD++LSLF  K   K +E++  + D VP+ L GDPGR 
Sbjct: 506  DLSKIEAGRMEIETVPFDIREELDNILSLFEDKVYQKKLEISALVHDTVPQWLYGDPGRL 565

Query: 377  RQIITNLMGNSIKFTEKGHIFVTVYLV------------EEVVDSI--------EVETEL 416
            RQ++ NL+GN+IKFT+ G+IF+ V LV            E+ +D I        E E+  
Sbjct: 566  RQVLINLVGNAIKFTKHGNIFLCVRLVDPQFFATVSSSNEQFLDLIDTRHRHNPETESAD 625

Query: 417  SSSKNTLSGY-------------------------PVA-DRC-HSWKGFKTFNQDGSTSP 449
             S   +L G                          P++   C   W+ +K         P
Sbjct: 626  GSHNTSLQGVMAVRSNLFRARHPKMAPPRLSMKPGPLSTSACVAEWRNWK---------P 676

Query: 450  FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVG 509
              S   D +  ++S+ED+G GIP   QSR+F PF+Q   S SR +GGTGIGLSI + LV 
Sbjct: 677  SGSLEFDEVACVISIEDSGIGIPKFMQSRLFEPFVQADSSTSREYGGTGIGLSICQKLVR 736

Query: 510  RMKGEIGFVSIPNIGSTFTFTAVF-GNGSSTSNEHNSQQMNNQPNSVSSE-FQGMKALVV 567
              +G+I   S P  GS F F+ V   +G        +  M   P+ +  E  +G++ L+V
Sbjct: 737  LTRGDITVESEPGEGSVFKFSLVLPTSGQRGDLRKLAFTMKRTPSDLEDERIRGIRVLLV 796

Query: 568  DPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKIINMILVEQEVWEKDTSV 624
            D  P+R +V+  +++R+G  +E   D    L+ L++          ++V+ +  +  T++
Sbjct: 797  DANPVRQEVAATYLRRVGALIEYAEDGSIALELLTR--DEGPPFQAVIVDLQGMDHMTAI 854

Query: 625  STLFVNNLRKLGCGFQSKLFLLANSI-SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 683
                   +++L     +K+ +LA SI   S   +         ++ KPLR + L + L +
Sbjct: 855  QL-----VQRLKESVVNKIPVLALSIPPESELQSELQKAGYQHIVHKPLRCNALISGLLQ 909

Query: 684  AMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGK 743
             +G+     + N      +   +L G+++L+VDDN VN +VA++ L+R GA VV V  G 
Sbjct: 910  TLGI----EVTNPSRKQNANAEMLAGKRLLVVDDNMVNRRVASSILQRNGATVVTVNGGI 965

Query: 744  KATELLM---PPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR---IRRGEVSIEAY 797
            +A  ++       QFD   MDIQMPEMDG+EAT++IRE E    ++   + R +   +  
Sbjct: 966  QAINIVKKQDADKQFDMILMDIQMPEMDGYEATRLIREWEVGKCHQCQALERIKYDYQEL 1025

Query: 798  ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
            +   +  +PI+A+TADV++ T+E C  +GMD Y+ K F A +LY
Sbjct: 1026 KECPHHRIPIVAVTADVMKGTHEMCFSAGMDDYIPK-FCASRLY 1068


>gi|168005127|ref|XP_001755262.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
            patens]
 gi|162693390|gb|EDQ79742.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
            patens]
          Length = 1218

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 289/946 (30%), Positives = 457/946 (48%), Gaps = 132/946 (13%)

Query: 3    RTRLLLIRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSH 62
            R+    +RVL  +R+  EK+   T   M T+++      +P   + EYAPVI     VS 
Sbjct: 250  RSLAYCLRVLPEQRQAVEKKYNAT---MYTYQNRIKLPRKP---DVEYAPVILESAGVSS 303

Query: 63   VISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNE 122
             + +D       + ++++AR +G   L+AP+      R+G   +F     +       NE
Sbjct: 304  YM-MDTFGYPILKSSIIQARDTGSFSLSAPYLQSGLWRMG---SFLPNYGDFDPLTLKNE 359

Query: 123  RIEATD--GYLGGIFDIESLVEKLL--HQLASKQTI------------------------ 154
             +      GY+  + ++E +   ++  H +     +                        
Sbjct: 360  AVRRARCVGYVATVLNVEEVFGSVVSSHFMTCSHEVHNLDRFRDADLYISAIAKVDSALD 419

Query: 155  FVNVYDITNLSHP--ISMYGSNVSDDGLWLVST-LNFGDPF-----------RKHEMRCR 200
              + Y+ +  ++P  +  YG+      +  VS    +G  +           R H +R  
Sbjct: 420  LNSYYNCSANTNPCEVRFYGNRTRSKSVEAVSVPFTYGTQYIVLECWYNYNIRLHVLR-- 477

Query: 201  FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAK 260
              +   WPLL ++  +   V   LV     A      + E+ +  +   K KAEAAD AK
Sbjct: 478  --EMIAWPLLMLAVVVFCTVAVYLVLKRMSAAEKDAYQREKIHAQLRAAKVKAEAADTAK 535

Query: 261  SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 320
            S FLATVSHEIRTPMNGV+GM ++LM T+L   Q +YV+ AQASG ALV+LI++VLD +K
Sbjct: 536  SSFLATVSHEIRTPMNGVIGMTNLLMGTDLTPQQLEYVKIAQASGNALVALISDVLDLSK 595

Query: 321  VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 380
            +E+G++E+E V F++R  LD++LSLF  K   K +E++  + D VP  L GDPGR RQ++
Sbjct: 596  IEAGRMEIETVPFDIREELDNILSLFEEKVHQKKLEISALVHDSVPRWLYGDPGRLRQVL 655

Query: 381  TNLMGNSIKFTEKGHIFVTVYLV-------------EEVVDSIEV------ETEL----- 416
             NL+GN+IKFT++G IF+ V LV             ++ +D ++       E EL     
Sbjct: 656  INLVGNAIKFTKQGSIFLCVRLVDPYFYETVSPPSSQQFLDLVDTRRRRIPEAELPDGNH 715

Query: 417  -SSSKNTL----------------------SGYPVADRC-HSWKGFKTFNQDGSTSPFKS 452
             +S K  +                      SG      C   W+ +K         P   
Sbjct: 716  DASLKGVIAVRSNLFRPRHPHMAPPRLSMKSGPSSTSACVAEWRNWK---------PIGG 766

Query: 453  SSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 512
               D +  ++S+ED+G GIP   Q+R+F PF+Q   S SR +GGTGIGLSI + LV    
Sbjct: 767  LDFDEVICVISIEDSGIGIPKFMQNRLFEPFVQADSSTSREYGGTGIGLSICQKLVRFTG 826

Query: 513  GEIGFVSIPNIGSTFTFTAVF-GNGSSTSNEHNSQQMNNQPNSVSSE-FQGMKALVVDPR 570
            G+I   S P  GS F F+ V   +G     +  +  M   P+ +  E  +G++ L+VD  
Sbjct: 827  GDIVVESEPGEGSVFKFSLVLPTSGQRGDLQKLAFAMKRSPSGLGDERIRGIRVLLVDAN 886

Query: 571  PIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA-SGSKIINMILVEQEVWEKDTSVSTLFV 629
            P+R +V+  +++R+G  +E   D    L  +          ++V+ +  +  +S+     
Sbjct: 887  PVRQEVAATYLRRVGALIEYADDVDTALELLTRENGPPFQAVIVDLQGMDHKSSIQL--- 943

Query: 630  NNLRKLGCGFQSKLFLLANSISSSRA-NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 688
              +++L         +LA SI    A  T         ++ KPLR + L + L + +G+ 
Sbjct: 944  --VQRLKVSTAKTFPVLALSIPPDIALQTELHEAGYQHIVHKPLRCTTLISGLLQTLGM- 1000

Query: 689  NKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL 748
                + N      +   +L G+ +L+VDDN VN  VA++ L+RYGA VV V  G +A   
Sbjct: 1001 ---QVTNLSRKQNANAEMLTGKCLLVVDDNMVNSTVASSMLQRYGATVVTVNGGNQAIIA 1057

Query: 749  LMPPH---QFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAY---ENVSN 802
            +       QFD   MDIQMPEMDG+EAT++IR+ E +   + R  E     Y   +   +
Sbjct: 1058 VKQQESDKQFDMILMDIQMPEMDGYEATRLIRKWEVDKCEQCRALEKIEYDYGEPKECPH 1117

Query: 803  FHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
              +PI+A+TADV++ T+E C  +GMD Y+ KP +  QL   + RF 
Sbjct: 1118 HRIPIVAVTADVMKGTHEMCFSAGMDDYIPKPLDQRQLQLLLERFL 1163


>gi|168047701|ref|XP_001776308.1| sensory histidine protein kinase [Physcomitrella patens subsp.
            patens]
 gi|162672403|gb|EDQ58941.1| sensory histidine protein kinase [Physcomitrella patens subsp.
            patens]
          Length = 1148

 Score =  363 bits (933), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 300/921 (32%), Positives = 450/921 (48%), Gaps = 127/921 (13%)

Query: 4    TRLLLI-RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSH 62
            TRLL + RV+ SER  FE++  W    +     N V +   +  + EY+P++F  +   H
Sbjct: 173  TRLLYVERVIASERAAFERK--WNSSILYVTPQNTVIRRPDN--DTEYSPIVFETED-EH 227

Query: 63   VISLDMLSGKEDRENVLRARASGKGVLT--APFRLLKTNRLGVILTFAVYKRELPSNATP 120
             + +D  +    R  +  AR +G   L+   P R   + ++G  L +    R+L + ++ 
Sbjct: 228  YLFVDSGAYPRYRSAIDAARDTGLFTLSPVTP-RAKNSWQMGAYLAYYGRGRDLTNFSSV 286

Query: 121  NERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITN-LSHPISMYGSNVSDDG 179
             ER +A  GY+G + ++  L  ++L Q      + V    + N +S   S Y  + S   
Sbjct: 287  AERRQACKGYVGTVMNVTELFHRVLFQFTDDVDMDVVAVFVVNPMSGLYSYYNCSASASD 346

Query: 180  LWLVSTLNFGDPFRK-HEM----------------RCRFKQK---------APWPLLAIS 213
                 T+   DP R+ HE+                RC  KQ            WPLL   
Sbjct: 347  ----CTVVLFDPARRAHEVSKAVALWDYGTQSFSVRCFPKQNLTLLALRAIIAWPLLMSL 402

Query: 214  TSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRT 273
              I   +I  LV    QA    +A +E+    +   K  AEAAD AKS FLATVSHEIRT
Sbjct: 403  VVIFCFIIVCLVLKRMQAIEKDVAVMEKMDEDLKVAKVAAEAADKAKSNFLATVSHEIRT 462

Query: 274  PMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 333
            PMNGV+GM ++LM T+L   Q +YV+ AQASG AL++LIN+VLD +K+E+G++ELEAV F
Sbjct: 463  PMNGVIGMTNLLMGTDLTDQQLEYVKIAQASGNALIALINDVLDLSKIEAGRMELEAVPF 522

Query: 334  NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK 393
            N+R  +D V  LF    Q K +E+++ + + VP  +IGDPGRFRQI+ NL+GN++KFT++
Sbjct: 523  NIRKEVDCVFHLFDETVQQKKLEMSMLVHNTVPTCVIGDPGRFRQILGNLIGNALKFTKE 582

Query: 394  GHIFVTVY-----------------------------LVEEVVDSIEVE---TELSSSKN 421
            G I V V                              L+ E +  +E+E       S+  
Sbjct: 583  GSILVCVRVMDPNQGSSSDFTAINVDQNSPDTHSSQGLITETLSEVELEGLRLRGGSTAP 642

Query: 422  TLSGYPVA-----DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476
             LS  P       +   SW+ +        TS           +I SVEDTG GIP   +
Sbjct: 643  RLSIQPGTEFNSREAVESWRKWNL-----KTSALNCKPPSHFTIIASVEDTGIGIPQHLE 697

Query: 477  SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF------- 529
             R+F PF Q   S SR HGGTGIGLSI + LV  M GEI   S   +GS F F       
Sbjct: 698  KRLFQPFSQANSSTSREHGGTGIGLSICEKLVKLMNGEITVTSNVGVGSVFEFFLPVKFH 757

Query: 530  TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 589
             A+ G    +      ++++           GM  ++VD   +R +V+  ++Q L I V+
Sbjct: 758  DALEGKPCCSKFPAGDKRLS-----------GMHVVLVDNNLVRQEVTANYLQCLDIYVD 806

Query: 590  VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL--FVNNLRKLGCGFQSKLFLLA 647
            +V D    L  +      +  ILV+ E      S++++    + +R +   F++   L  
Sbjct: 807  LVEDMESTLELLRIKGTSLQAILVDLE----GLSLASIADLTSTVRNMP-SFKALPVLGL 861

Query: 648  NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL 707
            +               +  ++ KPLR S LA  L  AM +      +      +    LL
Sbjct: 862  SLALPPLIEKELRDAGVSYMVKKPLRHSSLACVLLEAMNLTPTPATK--RAVKVDDSKLL 919

Query: 708  LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL---MPPHQFDACFMDIQM 764
              ++IL+VDDN VN +VA + LK+YGA V  V  G +A + +       + D   MDIQM
Sbjct: 920  SDKRILVVDDNMVNRRVATSMLKKYGAIVSSVNGGAEAVDAVKNRKEDEKLDLIVMDIQM 979

Query: 765  PEMDGFEATKIIR--EMEHNFNNRIRRGEVSIEAYENVS---NFHVPILAMTADVIQATY 819
            PEMDG+EAT+ IR  E+E+ F  R +          N+S   +  +PI+A+TADV++ T+
Sbjct: 980  PEMDGWEATRRIRNWEVENCFICRTK----------NISWCRHHRLPIVAVTADVLKGTH 1029

Query: 820  EECLRSGMDGYVSKPFEAEQL 840
             EC+ SGMD Y++K  + +Q+
Sbjct: 1030 TECINSGMDDYLTKADQKKQI 1050


>gi|168024653|ref|XP_001764850.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683886|gb|EDQ70292.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1114

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 304/936 (32%), Positives = 466/936 (49%), Gaps = 126/936 (13%)

Query: 5    RLLLI-RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHV 63
            RLL + RVL  +R  FEK+   TI  +     N VH   P   + EY+P+I  +  + H 
Sbjct: 184  RLLYMERVLNKDRAAFEKKWNGTIGYL---VGNVVH---PRGNDSEYSPIIHEKSDLQHA 237

Query: 64   ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 123
            + +D          +  AR +G   L        + ++G  L +    +E  S AT  ER
Sbjct: 238  L-VDPAHYPVFASAIHAARDTGLFTLWLATGDPSSWQMGAYLAYYGPGKEGSSFATIEER 296

Query: 124  IEATDGYLGGIFDIESLVEKLLHQLAS--------------KQTIFVNVYDITNLSHP-- 167
              A  GY+G + ++  +  +LL +                 + T+F   Y+ +N + P  
Sbjct: 297  RAACLGYVGTVLNVSEIFARLLSRFIDDVDMDVVFVYLVDPQATLF---YNCSNTAVPCV 353

Query: 168  ISMYG-SNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKA---------PWPLLAISTSIG 217
            +++Y  +  S DG   V+++N+       ++RC  K  +          WPLL     + 
Sbjct: 354  VALYDPARRSRDGK-PVASVNWDYGTLMFQLRCLPKHNSKLIALRNIIAWPLLMSVVVLF 412

Query: 218  ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 277
              +I  LV    QA    ++ +E+    +   K  AEAAD AKS FLATVSHEIRTPMNG
Sbjct: 413  FSIIVFLVLRRMQAIEKDVSIIEKMNVDLKAAKVAAEAADKAKSSFLATVSHEIRTPMNG 472

Query: 278  VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337
            V+GM ++LM T+L   Q DYV+ AQ+SG AL++LIN+VLD +K+E+GK+ELE+VSFNLR 
Sbjct: 473  VIGMTNLLMGTDLSSQQLDYVKVAQSSGNALIALINDVLDLSKIEAGKMELESVSFNLRK 532

Query: 338  ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 397
             +D V +LF  K Q K +E+ + + + VP  + GDPGRFRQI+ NL+ N++KFT++G I 
Sbjct: 533  EVDSVFTLFDEKLQQKKLEVFMLVHEAVPTCVTGDPGRFRQILVNLVSNALKFTKEGSIL 592

Query: 398  VT--------------------VYLVE-----------------------------EVVD 408
            V+                    VY+++                             E V 
Sbjct: 593  VSVRVMDPHSEADDQDYPSSDSVYILDPAQKASGSIQMSQMVPNASPKKSYNYPQIEGVK 652

Query: 409  SIEVETELSSSKNTLSGYP-----VADRCHSWKGFK--TFNQDGSTSPFKSSSADLINLI 461
              E +    ++   LS +P       +   +W+ +K  T +   +  P K+       +I
Sbjct: 653  RDESDLARGNTAPRLSMHPGDEANTREAVAAWRAWKLTTISGRNACKPPKN-----FTVI 707

Query: 462  VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 521
            VSVEDTG GIPL  Q+R+F PF Q   S SR +GGTGIGLSI + LV  M G +   S P
Sbjct: 708  VSVEDTGIGIPLHLQNRLFQPFSQADSSTSREYGGTGIGLSICQKLVKLMNGALTVKSKP 767

Query: 522  NIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHI 581
              GS F FT    +    S +  S  +   P    ++ +GM   +VD   +R +V+  ++
Sbjct: 768  GEGSVFEFTLPL-SVPEESGDKLSCCVKASPED-KTKLRGMHVALVDSNIVRQEVTASYL 825

Query: 582  QRLGIQV----EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637
            + LGI +    E V   LQ L Q    +K+  +++  + +  +D    T  + N+  L  
Sbjct: 826  RCLGICIDSFTEDVPTTLQFL-QREEKTKVHAVVVDLKGLPHEDILELTRSIRNIPSL-- 882

Query: 638  GFQSKLFLLANSIS-SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW 696
                 L +LA S+  +           I  +I KPLR + LAA L   +G+  +  ++  
Sbjct: 883  ---KALPMLALSMGLTPTGEIELKETGISHIIRKPLRYTTLAAVLLETIGIPARAPMKKI 939

Query: 697  ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP---H 753
             L ++    +L GR++L+VDDN VN +VA++ L RYGA V  V  G +A   +       
Sbjct: 940  NLNAI----MLSGRRLLVVDDNMVNRRVASSMLTRYGAIVSTVNGGVEAVNAVKNQKIGK 995

Query: 754  QFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH-VPILAMTA 812
            +FD   MDIQMPEMDG+EAT+ IR  E +        ++ +   E+    H +P++A+TA
Sbjct: 996  EFDLVLMDIQMPEMDGWEATRRIRRWELDC------CKLCLNTCEDFCPHHRLPVVAVTA 1049

Query: 813  DVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            DV+  T   C  +GMD Y++KP + +QL+  + RF 
Sbjct: 1050 DVVVQTRSMCFAAGMDDYITKPLDQKQLHALLDRFL 1085


>gi|168041528|ref|XP_001773243.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
            patens]
 gi|162675438|gb|EDQ61933.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
            patens]
          Length = 1020

 Score =  345 bits (884), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 291/939 (30%), Positives = 459/939 (48%), Gaps = 134/939 (14%)

Query: 5    RLLLI-RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIF-AQDTVSH 62
            RL+ + RV  + R  FE++   +I  ++   H+ V +   S  + EY+PV+F   D V  
Sbjct: 123  RLVYVERVPAANRAAFERKWNTSILYIN---HSNVTEVR-SANDTEYSPVVFETDDKVPK 178

Query: 63   VISLDMLSGKEDRENVLRARASGKGVLT--APFRLLKTNRLGVILTFAVYKRELPSNATP 120
             + +D  +    R  +  AR +G   L+   P R   T ++G  L +    R+  S ++ 
Sbjct: 179  YLFVDAGAYPAYRSAIDAARDTGLFTLSPVTP-RRDGTWQMGAYLAYYGPGRDYTSFSST 237

Query: 121  NERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGS-NVSDDG 179
              R +A  GY+G + ++  +   +L +      + V    + N++  +  + S N S   
Sbjct: 238  EARRQACRGYVGIVMNVTDVFHGVLSRFTDVDDMDVVA--VFNVNSKLESFDSYNCSAAA 295

Query: 180  LWLVSTLNFGDP------FRK-----------HEMRCRFKQKAPWPLLAISTSIGILVIA 222
                  +   DP      F K            E+RC  K+     LLA+  +I   ++ 
Sbjct: 296  SSKSCAVPLFDPAGRASEFSKAAVTWEYGTQHFEVRCLPKRNLK--LLALRAAIAWPLLM 353

Query: 223  SLVGHIFQATV----NRIAKVEEDYHGMMEL-------KKKAEAADVAKSQFLATVSHEI 271
            SLV   F   V     R+  +EE+   M ++       K  AEAAD AKS FLATVSHEI
Sbjct: 354  SLVVIFFSIIVYLVLKRMQAIEEEVRLMEKMNEDLNVAKLAAEAADKAKSNFLATVSHEI 413

Query: 272  RTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 331
            RTPMNGV+GM ++LM T L   Q +YV+  QASG  L++LIN+VLD +K+E+G++ELE+V
Sbjct: 414  RTPMNGVIGMTNLLMGTNLTTQQLEYVKVVQASGNTLIALINDVLDLSKIEAGRMELESV 473

Query: 332  SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT 391
            ++++R  +D V  LF  ++Q   +EL++ + D VP  ++GDPGRF QI+ N++ N++KFT
Sbjct: 474  AYDIRKEVDGVFLLFDDRAQQNKIELSMLVHDAVPNYIVGDPGRFHQILANVVSNALKFT 533

Query: 392  EKGHIFVTVYLVEEVVDSIEVETELSSSKNT----------------------------- 422
             +G+I V V  +     +  + T ++  +N+                             
Sbjct: 534  REGNILVCVRAMRVSQGNKALFTAITIDQNSAVPGDVQPSQVLPDEPFSLVGSDGMKLYE 593

Query: 423  -------LSGYPVADRCHS-----WKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
                   LS  P ++   S     W+ ++  N  GS         +   LIVSVEDTG G
Sbjct: 594  DQDVAPRLSIQPGSESNRSEALDLWRKWEWKNLSGS----HCKPPNQFILIVSVEDTGPG 649

Query: 471  IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
            IP   + R+F PF Q   + SR HGGTGIGL IS+ L+  M G I  +S P  GS F FT
Sbjct: 650  IPCHMEPRLFQPFSQADSNSSREHGGTGIGLFISQKLIKLMNGTIRVMSEPGKGSVFEFT 709

Query: 531  --AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 588
              A F + +  S      +            +G+   +VD   +  +++   ++  G+ V
Sbjct: 710  LPASFADTAGGSKPQLPME--------DKRLKGLHVALVDTDLVHREITASFLRYSGMHV 761

Query: 589  EVVSDQLQCLSQIA--SGSKIINMILVEQEVWEKDTSV----STLFVNNLRKLGCGFQSK 642
            E ++D +Q   +I   +G   +  ++V+ +      +V    S     +L+ L     S 
Sbjct: 762  E-LADDVQSTMEILQRTGGPTLQAVMVDIKGLPSAPAVELARSIRSTPSLKAL-----SV 815

Query: 643  LFLLANSISSSRANTSTD-GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 701
            L L +N +S        D GVS   +I K LR S  ++ L  AMG+  +  ++     ++
Sbjct: 816  LVLTSNPVSPPGEKELKDAGVSF--IISKSLRLSTGSSVLLEAMGLKPQAPVKKKANDNV 873

Query: 702  SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761
                LLLG+++L+VDDN VN +VA + LKRYGA V  V  G +  +L       D   MD
Sbjct: 874  ---KLLLGKRLLVVDDNMVNQRVATSMLKRYGAIVSSVNSGIEDKKL-------DLVLMD 923

Query: 762  IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 821
            IQM EMDG++AT+ IR  E    +   +  V+   +       +PI+A+TAD ++ T+ E
Sbjct: 924  IQMSEMDGWQATRHIRNWEVENCDTCCKSNVNWCRHN-----RLPIVAVTADAMKGTHAE 978

Query: 822  CLRSGMDGYVSKPFEAEQLYREVSRFF-------PPIPD 853
            C  SGMD Y++KP + +QL   + RF        PP+ D
Sbjct: 979  CFSSGMDDYITKPLDQKQLQSLLERFIKRDLVNVPPMTD 1017


>gi|10241599|emb|CAC09578.1| histidine kinase receptor [Fagus sylvatica]
          Length = 247

 Score =  340 bits (873), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 166/242 (68%), Positives = 194/242 (80%)

Query: 570 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFV 629
           RP  AK+SRYHIQRLGI VEVVSD  Q  S+I+SG+K+++M+LVEQEVW++DT +S  F+
Sbjct: 3   RPSLAKMSRYHIQRLGISVEVVSDLNQGWSKISSGNKVVDMVLVEQEVWDRDTHISASFI 62

Query: 630 NNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN 689
            NL+K+  G   KLFLLANSISSSR N +T G   P   MKPLR+SMLAASLQRAMGVG+
Sbjct: 63  INLKKIDHGIPPKLFLLANSISSSRTNAATSGGFSPYTTMKPLRASMLAASLQRAMGVGS 122

Query: 690 KGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 749
           KGN+RN ELPS+SLR L  GRKILI+DDNNVNLKVAA  LK+YGA VVC E   KA E L
Sbjct: 123 KGNLRNRELPSLSLRSLPRGRKILIIDDNNVNLKVAAGALKKYGADVVCAESRIKAIEFL 182

Query: 750 MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 809
            PPH+FDACFMDIQMPEMDGFEAT+ IR+MEH FNNRIRRGE S+EAY+N+SN   P   
Sbjct: 183 KPPHRFDACFMDIQMPEMDGFEATRKIRDMEHCFNNRIRRGEASVEAYDNISNGMFPFWP 242

Query: 810 MT 811
           +T
Sbjct: 243 VT 244


>gi|182678924|ref|YP_001833070.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634807|gb|ACB95581.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 816

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 206/623 (33%), Positives = 307/623 (49%), Gaps = 110/623 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K +AE A+VAK +FLA +SHEIRTPMNGV+GM  +L  TEL V Q++YV     S   L+
Sbjct: 135 KAEAEQANVAKGEFLANMSHEIRTPMNGVIGMAQLLDGTELSVQQREYVSIILHSADTLM 194

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            LIN+VLD +K+E+GKLELE++ F LR  L D L   + ++  KG+ELA ++   +P+ L
Sbjct: 195 RLINDVLDFSKIEAGKLELESIPFQLRDTLGDTLHSLAARAAHKGLELAYHVPVEIPDAL 254

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R RQIITNL+GN+IKFTEKG + V V L E     +++E E              
Sbjct: 255 VGDPTRLRQIITNLVGNAIKFTEKGEVVVDVRLKETTDTDVQLEFE-------------- 300

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                             V DTG GI    Q ++FT F Q   S
Sbjct: 301 ----------------------------------VRDTGIGISKNQQEKVFTAFGQADAS 326

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R +GGTG+GL+I+  L  +M G+I   S P +GSTF+F  +          H +++  
Sbjct: 327 TTRRYGGTGLGLTIAAQLAEKMGGKIKLESEPGVGSTFSFAPIL---------HLAREER 377

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS----QIASGS 605
                 S E +G   L+VD      ++++  +   G+   + S+  + L+     IA G 
Sbjct: 378 KVRTLSSDELRGQPVLLVDDNETNRRITQEILVNWGMVPTLASNGAEALAALDRAIAEGV 437

Query: 606 ----KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
                ++++ + E + +E            +R      Q+++ +L +S   +        
Sbjct: 438 PPRLALLDVFMPEMDGFE--------LARRIRTRQELAQTRILML-SSAERTDGEARMHE 488

Query: 662 VSIPSVIMKPLRSSMLAASLQRAMGVG--------NKGNIRNWELPSMSLRHLLLGRKIL 713
           + I  ++MKP++ S L  ++  A+GVG             R  E+P   +RH+LL     
Sbjct: 489 LGISRLLMKPIKQSDLLNAVTEALGVGLPEPHIPIPSPFTRPGEIP---IRHVLLA---- 541

Query: 714 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
             +D  VN +V  A L + G  V  VE G++A E +     FD   MD+ MP MDG  A 
Sbjct: 542 --EDGVVNQQVTVALLTKRGHPVEVVENGEEAVEAVQ-RGDFDVVLMDVHMPVMDGLAAA 598

Query: 774 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
           ++IRE E N                  +  H+PI+A+TA   +A  E C+ +GMD YV+K
Sbjct: 599 RMIRERERN------------------TGGHIPIIALTASATKADRERCMAAGMDDYVTK 640

Query: 834 PFEAEQLYREVSRFFPPIPDRSP 856
           PF A +LYR V +  PP     P
Sbjct: 641 PFRAAELYRAVEQSVPPTQQSPP 663


>gi|302036186|ref|YP_003796508.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604250|emb|CBK40582.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1431

 Score =  308 bits (790), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 208/612 (33%), Positives = 308/612 (50%), Gaps = 87/612 (14%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            ++  K+ AEAA+VAKS+FLA +SHEIRTP+NGVLGM ++L+ T L   QQ  + T + SG
Sbjct: 754  LVSAKEAAEAANVAKSRFLANMSHEIRTPLNGVLGMTELLLSTSLSAKQQSLLETVRRSG 813

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
             AL+ +IN++LD +K+E+GKLELE V F LR ++++ + LF+G + +K +EL  +I   V
Sbjct: 814  VALLEVINDILDFSKIEAGKLELEQVEFGLRQVVEEAVELFAGSAGNKKLELTYFIPADV 873

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P++L+GD  R RQI+ NL+GN+IKFT +G + V   L E+                    
Sbjct: 874  PDSLVGDAVRLRQILLNLIGNAIKFTAQGEVTVAFALAEQ-------------------- 913

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                         AD + L   V DTG GIP  AQ+++FT F Q
Sbjct: 914  ----------------------------HADTLTLACRVRDTGIGIPDAAQAQLFTAFTQ 945

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               S +R  GGTG+GL+I K LV  M GE+G VS P  G+TF+FT     GS+ +     
Sbjct: 946  ADGSTTRRFGGTGLGLAIVKQLVQLMGGEVGLVSAPGQGTTFSFTFTVTRGSAHA----- 1000

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSDQLQCLSQIA 602
                  P        G + L+VD      ++   H+Q  G  V   E   D L  L    
Sbjct: 1001 ----AYPPLAERHLAGRQILIVDDMRTNLEILATHLQSWGATVFTAESADDALLQLEHFR 1056

Query: 603  SGSKIINMILVEQEVWEKDTSVSTLFVNNLR--KLGCGFQSKLFLLANSISSSRANTSTD 660
               + I+M +++  +  +D       V+  R  K    +Q+   +  +S+      +   
Sbjct: 1057 HKQQQIDMAILDLRMPGRDG------VDLARSIKEQAAYQNLPLIALSSVERLSDESDVT 1110

Query: 661  GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
                 S + KP+R S+L   L RA+G G+ G + +    + + R  +  R IL+ +DN V
Sbjct: 1111 HRLFHSFLRKPVRQSLLRDCLTRALG-GSAGPVPHSPEFAATPRPRVDAR-ILLAEDNPV 1168

Query: 721  NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
            N  VA++ L+  G  +     G+ A E      +FD   MD QMPEMDGF AT  IR  E
Sbjct: 1169 NQDVASSMLEMLGCRITIAPNGRAAVEAAT-TGRFDLILMDCQMPEMDGFTATAAIRRQE 1227

Query: 781  HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                +R                 HVPI+A+TA+ ++     CL +GMD Y++KPF   QL
Sbjct: 1228 ATATDR----------------RHVPIIALTANAMEGDRARCLAAGMDDYLTKPFTVAQL 1271

Query: 841  YREVSRFFPPIP 852
            Y  ++++  P P
Sbjct: 1272 YAFLTQWLTPRP 1283


>gi|345863470|ref|ZP_08815681.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent Tica)]
 gi|345125548|gb|EGW55417.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent Tica)]
          Length = 1149

 Score =  301 bits (771), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 214/647 (33%), Positives = 327/647 (50%), Gaps = 109/647 (16%)

Query: 227  HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM 286
            H F   +  I+  ++    + E K+KAE+A  AKS+FLA +SHEIRTPMNGVLGM ++L 
Sbjct: 462  HYFSMVMRDISDRKQVERELFEAKEKAESAAKAKSEFLAMMSHEIRTPMNGVLGMAELLA 521

Query: 287  DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 346
             T+LD  QQ+++     SG +L+ +IN++LD +K E+GK+ELEA+SF+L   + D + L 
Sbjct: 522  GTKLDDEQQEFLEVITQSGNSLLGIINDILDFSKAEAGKIELEAISFDLERTIYDAVRLL 581

Query: 347  SGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 406
            S  +  KG+EL +     +P  ++GD GR RQIITNL GN+IKFT++GHI          
Sbjct: 582  SANASSKGLELIISYPPELPRQVMGDAGRIRQIITNLAGNAIKFTQQGHI---------- 631

Query: 407  VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 466
              +I VET                         T   DG TS F+          +SV D
Sbjct: 632  --AINVET-------------------------TKATDG-TSRFR----------ISVID 653

Query: 467  TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
            TG GIP   Q R+F  F Q   S +R +GGTG+GL+ISK LV  M G IG  S    GST
Sbjct: 654  TGIGIPEAQQQRLFKSFTQADSSTTRKYGGTGLGLAISKQLVELMGGSIGVSSTQGEGST 713

Query: 527  FTFTAVFGNGSSTSNEHNSQQMNNQPNSV--SSEFQGMKALVVDPRPIRAKVSRYHIQRL 584
            F      G               +QP      ++   +K L++D   +  ++ R  ++  
Sbjct: 714  FWLEIPLG--------------LSQPREPLGHADLSRLKCLILDDNLLNQRIFRDQLRSC 759

Query: 585  GIQVEVVS---DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641
            G+Q+  V+   + L   +++AS +K  ++ L++  +   +     L    LR++    ++
Sbjct: 760  GMQIHTVTTGDEALTLATEMASANKPFDIFLLDFNLPGINGEQIAL---RLRQMPAYKET 816

Query: 642  KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL--- 698
             + LL +S +   A    + V   + ++KP+   +L  +++    V N    +  E+   
Sbjct: 817  PMILLTSSGNRGDAK-HFEEVGFDAYLIKPVPHQILHEAIEGV--VSNTLQHKEQEIITQ 873

Query: 699  ---------PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 749
                     PS    H  +  KIL+V+D   N KVA++ L + G  V   + G+ A E L
Sbjct: 874  YHVIEGHTQPSNKTEH--IDAKILLVEDLLPNQKVASSVLSKMGCTVEIADNGRIALERL 931

Query: 750  MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 809
                 FD   MD QMPEMDG EAT+ IR+ E +                  +  H PI+A
Sbjct: 932  -AEDSFDIVLMDCQMPEMDGLEATRAIRQRERD------------------TGTHTPIIA 972

Query: 810  MTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIPDRSP 856
            MTA+ + +  ++CL +GMD ++SKPFE EQL + + ++  P   +SP
Sbjct: 973  MTANNMASDRKQCLEAGMDDFISKPFEREQLAKLLGKWLNP---KSP 1016


>gi|302755686|ref|XP_002961267.1| hypothetical protein SELMODRAFT_73679 [Selaginella moellendorffii]
 gi|300172206|gb|EFJ38806.1| hypothetical protein SELMODRAFT_73679 [Selaginella moellendorffii]
          Length = 305

 Score =  300 bits (769), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 158/281 (56%), Positives = 197/281 (70%), Gaps = 3/281 (1%)

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFG 189
           Y+GG FD +SLVE LL QL+  QTI VNV D+ N S+P+ MYG N+ D     V  + FG
Sbjct: 22  YVGGAFDFKSLVENLLQQLSKSQTIIVNVNDVMNKSNPLVMYGLNILDGNEIEVCQVEFG 81

Query: 190 DPFRKHEMRCRFKQK--APWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 247
           DPF K EMRC   +K      LL     + +L +   +  IF A  N I KVEE Y  M 
Sbjct: 82  DPFWKDEMRCDAGEKNLHSHRLLCGPPPLELLSLFCWLTQIFYAAGNCITKVEEGYCKME 141

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           +LK +AE+ADVAKSQFLATVSHEIRTPMNG LGML MLMD +LD TQ+DY  TA  SGK 
Sbjct: 142 DLKVRAESADVAKSQFLATVSHEIRTPMNGALGMLQMLMDIKLDSTQKDYTHTALESGKQ 201

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L+  INEVLDQAK+ESG++ELE V F L  IL+++L+LFS K +DK +ELA Y+S+RVP+
Sbjct: 202 LIKHINEVLDQAKIESGRMELETVPFKLHTILENILTLFSAKDKDKEIELAAYVSERVPD 261

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 408
            L G P R  QI+T+L+GNSIKF + GHIFV+++L E+V D
Sbjct: 262 VL-GHPVRLHQIVTSLVGNSIKFPDSGHIFVSMHLEEDVND 301


>gi|254409902|ref|ZP_05023682.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
 gi|196182938|gb|EDX77922.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
          Length = 1258

 Score =  298 bits (764), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 203/597 (34%), Positives = 309/597 (51%), Gaps = 57/597 (9%)

Query: 253  AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
            A AA  AKS+FLAT+SHEIRTPMNGV+GM  +L+DT+L   QQ++V T + SG  L+++I
Sbjct: 541  ALAATRAKSEFLATMSHEIRTPMNGVIGMTGLLLDTQLTSQQQEFVTTIRHSGDTLLTII 600

Query: 313  NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
            N++LD +K+ESGKLELE VSF+L+  +++ L L + K+ DK +ELA  I+ + P  +IGD
Sbjct: 601  NDILDFSKIESGKLELEEVSFDLQVCIENCLDLLAAKASDKNLELAYQITPQTPRMIIGD 660

Query: 373  PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 432
              R RQI+ NL+ N++KFT+ G + V+V    E +D  + E   + +  T    P     
Sbjct: 661  VTRLRQILVNLLSNAVKFTQSGEVIVSVN--AEKLDYEQWERPETKTSLTPRITPSVATP 718

Query: 433  HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492
            H    F                        +V+DTG GIP E  +R+F PF QV  S +R
Sbjct: 719  HYRIQF------------------------AVKDTGIGIPPERLNRLFQPFSQVDSSTTR 754

Query: 493  THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 552
             +GGTG+GL+I K L   M G +   S  +IGSTF FT V     ST      QQ  NQ 
Sbjct: 755  KYGGTGLGLAICKQLCEMMGGTMWVESQEDIGSTFYFTLVVPADPST------QQNTNQV 808

Query: 553  NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMIL 612
              +  E  G + L+VD      K+     Q  G++       +Q L  +  G +  ++ +
Sbjct: 809  CRL--ELDGQRLLIVDDNDTNRKILMRQAQVWGMECYAAQSGVQALDWLHQGER-FDLAI 865

Query: 613  VEQEVWEKDTSVSTLFVNNLRKL-GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKP 671
            ++ ++ E D          +RKL GC  Q+   ++ +S+   + +T     +    + KP
Sbjct: 866  LDMQMPEMD---GVTLAQKIRKLPGC--QTLPLVMLSSLGELQVDTPDVKQTFAGFLTKP 920

Query: 672  LRSSMLAASLQRAM-GVGNKGNIRNWELPSMSLRH-LLLGRKILIVDDNNVNLKVAAAGL 729
            ++ S L   L +AM G+  K  I + + P +  +    L  +IL+ +DN VN +VA   L
Sbjct: 921  IKQSQLCDVLMQAMAGIPIKVKIHSAKKPDIDAKMGERLPLRILLAEDNPVNQQVALHLL 980

Query: 730  KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789
            +R G        G +  E L     +D  FMD+QMPEMDG EA++ I +   + + + + 
Sbjct: 981  QRMGYRADVAGNGLEVLEALQ-RQPYDVVFMDVQMPEMDGLEASRRICQEWCDLDGKTQS 1039

Query: 790  GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
                             I+AMTA+ +    E C+ +GMD Y+SKP   E+L   + +
Sbjct: 1040 QRPR-------------IIAMTANAMVGDREMCIEAGMDDYISKPIRIEELVEALKK 1083


>gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1175

 Score =  298 bits (763), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 210/673 (31%), Positives = 330/673 (49%), Gaps = 96/673 (14%)

Query: 233  VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 292
            V  + K  +D   +++ K+ AE A  AKS FLA +SHEIRTPMNGV+GM  +L+DT+LD 
Sbjct: 377  VTELVKARQD---LIQAKEHAEEATRAKSDFLANMSHEIRTPMNGVIGMTGLLLDTDLDS 433

Query: 293  TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 352
             QQ Y RT ++S ++L+++IN++LD +K+E+G+L++E V F+L A+L D   + + K+++
Sbjct: 434  EQQHYARTVRSSAESLLTVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAEE 493

Query: 353  KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 412
            KG+EL   +   VP  + GD GR RQI+ NL+GN++KFTE G + + V    EVVD    
Sbjct: 494  KGLELICSMDPNVPSMVRGDSGRLRQILMNLVGNAVKFTEHGEVEIRVS-KSEVVD---- 548

Query: 413  ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 472
                   ++ +S  P     H   G K  +Q G +         ++ L   + DTG GIP
Sbjct: 549  ------QRSEVSDQPANRLSHEQTGIK--DQYGDSR--------IVELCFQIRDTGIGIP 592

Query: 473  LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532
             + Q  +F  F QV  S +R  GGTG+GL+IS+ L   M G  G  S+ + GSTF FT  
Sbjct: 593  QDKQDSLFESFSQVDASTTRKFGGTGLGLAISRQLAEMMGGTAGLESVEDQGSTFWFTVR 652

Query: 533  FGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 592
             G           Q    Q   V +  QG++ L+VD      ++ R      G++    +
Sbjct: 653  LG----------VQDEQQQERPVPACLQGVRTLIVDDNSTNREILRVRFGSWGMRPGEAA 702

Query: 593  DQLQCLSQIASGSKIIN--MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
            +    LS +   +K  N   +L   ++   D    TL   N+++ G    ++L +++++ 
Sbjct: 703  NGSAALSMLHQ-AKAENDPFVLAVLDMQMPDMDGETLG-RNIKEDGQLKDTRLIMMSSAT 760

Query: 651  SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL--- 707
              +  +         S++ KP+  S L ASL++ +      ++         +R      
Sbjct: 761  GQTGDSRRLHETGFDSILNKPVLPSELYASLEKILARTGAADLPAGHTEPEKIRQGYPDF 820

Query: 708  --LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQ 763
                 +IL+ +DN VN +VA   LK+ G     V  G++A   L  +P   +D   MD+Q
Sbjct: 821  SGTKARILVAEDNMVNQQVALGILKKMGLRADAVANGQEALHALENIP---YDLVLMDVQ 877

Query: 764  MPEMDGFEATKIIRE--------------------------MEHNFNNRIRRGEV----- 792
            MPEM G EAT+ IR                           MEH   ++ +R EV     
Sbjct: 878  MPEMGGLEATRRIRSMEHGTPVKPLSTTGSPLGCFTGQAGGMEHGAEDKGQRSEVRDQRL 937

Query: 793  ---------------SIEAYENVS--NFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
                           SI  + N S   F +PI+AMTA  +Q   E C+ +GMD Y +KP 
Sbjct: 938  ESESQNTSVPESLNPSIPQFLNSSIPEFRIPIIAMTAGAMQEDRERCIEAGMDDYTAKPV 997

Query: 836  EAEQLYREVSRFF 848
              ++L R + ++ 
Sbjct: 998  NPDELARVLEKWL 1010


>gi|298528781|ref|ZP_07016185.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298512433|gb|EFI36335.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1625

 Score =  298 bits (763), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 219/699 (31%), Positives = 333/699 (47%), Gaps = 122/699 (17%)

Query: 191  PFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELK 250
            PF     R  + + A WP+           I  + GHI   T  + ++++     + E +
Sbjct: 866  PFVSARGRRLWVRTAAWPVYDSGR------IVRVAGHIMDITELKQSQLD-----LQEAR 914

Query: 251  KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 310
             KA+ A  AKS+FLA +SHEIRTPMNGV+GM D+LMDTEL   Q+    + Q+SG+AL++
Sbjct: 915  DKAQEATRAKSEFLANMSHEIRTPMNGVIGMTDLLMDTELRPEQRSLAESIQSSGEALLA 974

Query: 311  LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 370
            LIN++LD +K+E+G+LELE+V FNLR +L+D+ SL + ++ +KG+EL       VP  + 
Sbjct: 975  LINDILDFSKIEAGRLELESVDFNLRYLLEDLASLMAVRADEKGLELICLPDPDVPAQVQ 1034

Query: 371  GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 430
            GDPGR RQI+TNL+GN+IKFT +G + V V             +E+S+            
Sbjct: 1035 GDPGRLRQILTNLVGNAIKFTHQGEVVVRVQ-----------RSEVSA------------ 1071

Query: 431  RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 490
                                     D + L+ +V+DTG GIP +    +F  F QV  S 
Sbjct: 1072 -------------------------DDVLLLFTVQDTGIGIPEDKIDLLFNKFSQVDAST 1106

Query: 491  SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 550
            +R  GGTG+GL+IS+ L   M GE+G  S    G  F FTA              Q+   
Sbjct: 1107 TRKFGGTGLGLAISRQLAEMMGGEVGVQSEYGRGCKFWFTARL----------TLQKKQE 1156

Query: 551  QP-NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSK 606
            +P  ++  +  G   L+VD      ++ +  ++  G++VE  S   + L+ L ++ S   
Sbjct: 1157 EPLPALPQDLHGEHILIVDDNETNLEILKKQLEAWGVEVEQASGGHEALRILDRVYSEGN 1216

Query: 607  IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
               M +++  +   D          ++K G  F     ++  S+         +     +
Sbjct: 1217 SFAMAILDMHMPAMDGGE---LGQRIKKSG-KFNDLPLVMLTSLGRPGDAKIFEEQGFNA 1272

Query: 667  VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL--RH------------LLLGRKI 712
             + KP+R S L  +L   +    K        P  S+  RH            +     +
Sbjct: 1273 YLNKPVRQSELFDTLLTVLSSAGKA-------PGHSIITRHQAREIKRQQSELIKFKGHV 1325

Query: 713  LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEA 772
            L+ +DN VN KVA   L + G +   V+ G KA E L     +D   MD+QMPEMDG EA
Sbjct: 1326 LVAEDNPVNQKVAVGLLNKMGLSADIVDTGLKAVEALQ-NQSYDLVLMDVQMPEMDGLEA 1384

Query: 773  TKIIREMEHNFNNRIRR-GEVSIEA---------YENVS-------------NFHVPILA 809
            T+ IR MEH    R +R G+   E+         Y N S             N  +PI+A
Sbjct: 1385 TQEIRRMEHGTEEREQRTGDRRWESQPLNPSTPEYHNPSIPKSFNPKIPQSLNPKIPIIA 1444

Query: 810  MTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            MTA  +    + C  +GMD YVSKP   ++L + ++R+ 
Sbjct: 1445 MTAGAMNQDRDRCFEAGMDDYVSKPVSHQELLKVLNRWL 1483


>gi|392408843|ref|YP_006445450.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
 gi|390621979|gb|AFM23186.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
          Length = 1390

 Score =  298 bits (762), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 208/637 (32%), Positives = 318/637 (49%), Gaps = 115/637 (18%)

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            D   ++E K  AE+A  AKS FLAT+SHEIRTPM+G++GM ++LM T+L   Q +Y+   
Sbjct: 731  DVSDLVEAKLAAESASKAKSDFLATMSHEIRTPMHGIIGMTELLMQTQLSREQTEYLEII 790

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
            +ASG +L+ LIN++LD +K+E+GK ELE + F LRA+L + +   + ++  KG+ELA  +
Sbjct: 791  KASGDSLLRLINDILDFSKIEAGKFELEHIGFGLRAMLGETMESLAIQAHQKGLELAFRV 850

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
            S  VP+ L GDP R RQII NL+GN+IKFT  G +F+ V     +V+S            
Sbjct: 851  SPEVPDVLKGDPVRLRQIIVNLVGNAIKFTSAGEVFMDV-----IVES------------ 893

Query: 422  TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 481
                                          +S+ +   L  SV DTG GIP + Q  IF+
Sbjct: 894  ------------------------------ASTPNETTLHFSVSDTGIGIPEDKQQEIFS 923

Query: 482  PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 541
             F QV   +SR +GGTG+GL+I   L   M G++   S    GSTF   A F        
Sbjct: 924  SFTQVDTGMSRRYGGTGLGLAIGSRLAAMMDGKLWVESKIGNGSTFHLMAKF-----EIQ 978

Query: 542  EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
            E+++ ++  Q +       G+  LVVD      ++ +  +   G+    V++    L+ +
Sbjct: 979  ENSTDRL--QESDTRFNLMGLPVLVVDDNATNLRILKEILTGFGMNPTCVNEASAALTAV 1036

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS---------ISS 652
                K  +  L+            T+   N+ ++  GF+    ++  +         ++S
Sbjct: 1037 KEAQKTESPFLL------------TILDANMPEMD-GFELSRTIVETTGSRGPVIMMLTS 1083

Query: 653  SRANTSTD-----GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW---ELPSMSLR 704
            SR    ++     G+SI   + KP++ + L  ++Q  +G+ +K +  N    E  +   R
Sbjct: 1084 SRNRGDSERCKQCGISI--YLKKPIKQAELFNAIQMTLGIAHKPDESNQPVAECIAGERR 1141

Query: 705  HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 764
             LL   KIL+V+DN VN  +A   L++ G  V     GK+A + L     FD   MDI+M
Sbjct: 1142 RLL---KILLVEDNPVNQTLALRLLEKRGCTVSIASNGKEALKSL-EAESFDLILMDIEM 1197

Query: 765  PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 824
            PEM+GFE T+ IR  E +                  S  H+PI+AMTA  +    E CL 
Sbjct: 1198 PEMNGFETTQAIRNAEQS------------------SGEHIPIIAMTAHAMTGDRERCLD 1239

Query: 825  SGMDGYVSKPFEAEQLYREVSRFF-------PPIPDR 854
            +GMDGYVSKP ++ +L+  + +F        P IPDR
Sbjct: 1240 AGMDGYVSKPVDSRELFFTIDKFTQDRSACDPVIPDR 1276


>gi|392424053|ref|YP_006465047.1| PAS domain S-box [Desulfosporosinus acidiphilus SJ4]
 gi|391354016|gb|AFM39715.1| PAS domain S-box [Desulfosporosinus acidiphilus SJ4]
          Length = 1367

 Score =  296 bits (759), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 204/604 (33%), Positives = 306/604 (50%), Gaps = 100/604 (16%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K+ AEAA+ AKSQFLA +SHEIRTPMNG+ G L++L  ++L   Q++Y+R  ++S + L+
Sbjct: 848  KRAAEAANQAKSQFLANMSHEIRTPMNGIFGFLELLNHSQLSQVQREYIREVKSSSETLL 907

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
             LIN++LD +K+ESGKL LE ++FNLR  ++D +SLF   + +K +EL   I   VP+ +
Sbjct: 908  HLINDILDLSKIESGKLTLENLNFNLRTTIEDAMSLFVPTAYEKHLELYTQIKANVPDEV 967

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GDP R +QI++NL+ N++KFTE G + + V  VEE              KN        
Sbjct: 968  SGDPSRLKQILSNLISNALKFTENGEVSIVVETVEE--------------KN-------- 1005

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                   GF T                       V DTG GIP E   RIF PF Q   S
Sbjct: 1006 -------GFATIR-------------------FEVRDTGIGIPKEDTKRIFRPFDQADAS 1039

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG--NGSSTSNEHNSQQ 547
             +R +GGTG+GL+I+K LV  MKG IG  S+P  GSTF FTA F   N  +  +++ S  
Sbjct: 1040 TTRKYGGTGLGLAITKELVTIMKGTIGVDSVPGQGSTFYFTAKFKILNKKAVCDKYVS-- 1097

Query: 548  MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI----AS 603
            +NN           +   +VD      ++ R +++  G +V       + LS I     S
Sbjct: 1098 LNN-----------VNVFIVDDNDNNRRIVRSYLEDAGCKVMEAKSSDKALSTILNNAYS 1146

Query: 604  GSKIINMILVEQE---VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 660
             +  I ++LV+     +   D + +   +   + L      +L LL +S     A  + +
Sbjct: 1147 ENNKIQLVLVDYHMPGINGFDLATALNMIPATKDL------RLILLTSSAQMGDAGRARE 1200

Query: 661  GVSIPSVIMKPLRSSMLAASLQRAMGVG-NKGNIRNWELP-SMSLRHLLLGRKILIVDDN 718
             +     + KP+R   L   +   +G+  +  N R      + +    +L  K+L+V+DN
Sbjct: 1201 -LGFSGYLTKPVRRDELLNCMSIVLGLERDPENSREIVTKYTHNENQSVLKPKLLLVEDN 1259

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN KV  A LK  G        G++A E+++    +D  FMD QMP MDG+EATK IRE
Sbjct: 1260 EVNRKVVLATLKSRGMTCDVAMDGQEAYEVMLKK-DYDLVFMDCQMPVMDGYEATKKIRE 1318

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
             E                     + H  I+AMTA+ +    E+CL +GMD Y+SKP + E
Sbjct: 1319 AE--------------------GSKHTKIIAMTANAMMGDKEKCLEAGMDDYISKPIDFE 1358

Query: 839  QLYR 842
            ++++
Sbjct: 1359 EMFK 1362


>gi|350551958|ref|ZP_08921167.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
            700588]
 gi|349795601|gb|EGZ49397.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
            700588]
          Length = 1343

 Score =  296 bits (758), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 203/612 (33%), Positives = 292/612 (47%), Gaps = 90/612 (14%)

Query: 248  ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            EL  KAE A++AKS FLA +SHEIRTPMNGV+GM  +L+DTEL+  Q+ Y      S  A
Sbjct: 648  ELASKAEQANIAKSHFLANMSHEIRTPMNGVIGMTGLLLDTELNTEQRRYAEIVHTSADA 707

Query: 308  LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
            L++LIN++LD +K+E+ +L+LE + FNL  +L+D  +  + ++ +KG+EL  +    VP 
Sbjct: 708  LLTLINDILDFSKIEAHRLDLEMLDFNLLELLEDFAATLAVRAHEKGLELLCFADPNVPT 767

Query: 368  TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 427
             + GDPGR RQI+TNL+ N+IKFT++G + V V+L+ +                      
Sbjct: 768  QVRGDPGRLRQILTNLVSNAIKFTQQGEVVVRVFLMAQ---------------------- 805

Query: 428  VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487
             A  C                           L  SV DTG GIP E Q  +F  F QV 
Sbjct: 806  TAQEC--------------------------TLHFSVRDTGIGIPEEKQDILFEKFTQVD 839

Query: 488  PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 547
             S +R +GGTG+GL+ISK L   M GEIG  S    GSTF FT   G       E    +
Sbjct: 840  ASTTRRYGGTGLGLAISKQLAELMGGEIGLHSQEENGSTFWFTVCLGK-----QEQGQAE 894

Query: 548  MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 607
            +  Q N    +  G++ LVVD      ++    +   G++V   +D L  L  +     +
Sbjct: 895  IQAQGN---PDLHGVRILVVDDNATNREILITRLNLWGMRVSDYADALSALEALKQAVSV 951

Query: 608  ----INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
                  + +++ ++ E D       +  L K     QS   ++  S+         +   
Sbjct: 952  HKDPFKLAIIDMQMPEMDGET----LGTLIKSDASLQSLKTIMLTSLGMRGDAKRFEQAG 1007

Query: 664  IPSVIMKPLRSSMLAASLQRAMGVGNKGNIR---NWELPS-MSLRHLLLGRKILIVDDNN 719
              + I KPLR   L   L   M  G +   R     E P+ M   H  +  +IL+ +DN 
Sbjct: 1008 FSAYITKPLRHLELFNVLSDLMAEGPQTQSRRILTRERPAQMPQHHFNVQARILLAEDNI 1067

Query: 720  VNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATKIIR 777
             N KVA + LKR G     V  G +    L  +P   +D   MD+QMP MDG  AT+ IR
Sbjct: 1068 TNQKVALSILKRLGLKADTVADGAEVLVALKTIP---YDLVLMDVQMPVMDGLAATRAIR 1124

Query: 778  EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
            + +                   V N  +PI+AMTA  +Q   E CL++GM+ YV KP  A
Sbjct: 1125 DPQ-----------------TPVFNHAIPIIAMTAHAMQGDRERCLQAGMNDYVPKPVSA 1167

Query: 838  EQLYREVSRFFP 849
              L   + R+ P
Sbjct: 1168 TILAEALKRWLP 1179


>gi|358347444|ref|XP_003637767.1| Histidine kinase [Medicago truncatula]
 gi|355503702|gb|AES84905.1| Histidine kinase [Medicago truncatula]
          Length = 397

 Score =  296 bits (758), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 162/336 (48%), Positives = 206/336 (61%), Gaps = 79/336 (23%)

Query: 42  EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRL 101
           E SP+ +EYAPVIF                 EDREN++RARA+GK V+T+PFRLL ++ L
Sbjct: 134 EASPVRDEYAPVIF-----------------EDRENIMRARATGKAVMTSPFRLLGSHHL 176

Query: 102 GVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDI 161
           GV+LTF VYK + P N T  E I+AT G                           NVYD+
Sbjct: 177 GVVLTFPVYKSKFPPNPTTEELIKATAG-------------------------ISNVYDV 211

Query: 162 TNLSHPISMYGSNVSDDGLWLV--STLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGIL 219
           TN + P+ MYG+   +  + LV  S L+FGDP+RKH+M CR+ QKAP    A+ST+I   
Sbjct: 212 TNSTDPLIMYGNQYEEGDVSLVHESKLDFGDPYRKHQMICRYHQKAPPNWTALSTAILFF 271

Query: 220 VIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVL 279
           VI  L+G+I     N I KVE+D+H M ELK +AEAADVAKSQFLATVSHEIRTPMNG+L
Sbjct: 272 VILLLIGYILYGAGNYIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGIL 331

Query: 280 GMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAIL 339
                                              VLD+AK+E+GKLELEAV F+LR+IL
Sbjct: 332 -----------------------------------VLDRAKIEAGKLELEAVPFDLRSIL 356

Query: 340 DDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGR 375
           DDVLSLFS KS+ KG+ELAV++SD+VP+ ++GDPG+
Sbjct: 357 DDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGK 392


>gi|302035961|ref|YP_003796283.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604025|emb|CBK40357.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 954

 Score =  295 bits (756), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 197/649 (30%), Positives = 317/649 (48%), Gaps = 91/649 (14%)

Query: 212 ISTSIGILVIASLVG-HIFQATVNRIAKVEEDYHG----MMELKKKAEAADVAKSQFLAT 266
           I T  G L +AS+V   + + T + ++K  +D       + E + +A  A  AK+ FLAT
Sbjct: 366 IDTPNGKLALASIVDITMRKRTESALSKAAQDLEWKNWEISEARDQAVKAGQAKTDFLAT 425

Query: 267 VSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKL 326
           +SHEIRTPMNGVLGM  +L+DT L   Q+DY++T + S ++L+ +IN++LD +K+E+GK 
Sbjct: 426 MSHEIRTPMNGVLGMTTLLLDTALSTEQRDYLQTLRHSSESLLRIINDILDFSKIEAGKF 485

Query: 327 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGN 386
            +E + F+LR  ++D L + +  SQD+ +EL   I  + P T+IGDPGR RQ++TNL+GN
Sbjct: 486 TIEQIPFDLRMTIEDTLDMLAPASQDRHLELVGLIDAQTPRTVIGDPGRIRQVLTNLLGN 545

Query: 387 SIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 446
           +IKFTE+G + + V  ++E                                         
Sbjct: 546 AIKFTEQGEVLIQVLPLDE----------------------------------------- 564

Query: 447 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKY 506
                      + L   V DTG G+  EAQ+++F  F Q   S +R +GGTG+GL+I K 
Sbjct: 565 -------DPTFVMLRFEVIDTGIGLSPEAQAKMFQAFTQADSSTARKYGGTGLGLTICKR 617

Query: 507 LVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALV 566
           LV  M GEIG  S+P +G+   FT  F   +  +           P   S++F G +  +
Sbjct: 618 LVELMGGEIGLQSMPGLGTRIWFTVRFALQADAAPP-------VMPPLTSNDFAGRRVCL 670

Query: 567 VDPRPIRAKVSRYHIQRLGIQ----VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDT 622
           VD  P    + +YH+    +     V+  S         A G+   ++ +++  +     
Sbjct: 671 VDDNPTNRSLLQYHVSGWNMHHESAVDAPSALALLRQAAADGTP-FDLAIIDIHM----P 725

Query: 623 SVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQ 682
            +  L +  L K     ++   ++  +      + +       + + KP+R   LA  ++
Sbjct: 726 DIGGLQLCRLIKEDPAIRATHLIVLTAFGQRGDSIAAKEAGASAYLPKPVRERQLADCIR 785

Query: 683 RAMGVGNKGNIRNWELP--SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVE 740
             +G  +        +   +MS       +++L+VDDN VN KVA   L++ G  V    
Sbjct: 786 LILGRKDSDETSTPLITRHTMSEAQAQAAQRLLVVDDNPVNQKVALKMLEKLGYRVDVAG 845

Query: 741 RGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENV 800
            G +A   +   HQ+   FMD QMPE+DG E T++IR  E                    
Sbjct: 846 NGMEALAAVC-RHQYPLVFMDCQMPELDGLETTRLIRSQEQ------------------- 885

Query: 801 SNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
           +  H+PI+AMTA+ +    E CL++GMD ++SKP   +QL   +SR+ P
Sbjct: 886 AGTHLPIIAMTANAMAGDRENCLKAGMDDFISKPIVPDQLREILSRWLP 934


>gi|298529160|ref|ZP_07016563.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510596|gb|EFI34499.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1154

 Score =  294 bits (752), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 204/626 (32%), Positives = 320/626 (51%), Gaps = 67/626 (10%)

Query: 252 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
           +A+AA  AKS+FLA +SHEIRTPMNGV+GM  +L++T+L+ TQ+ Y  T ++SG+AL++L
Sbjct: 409 RADAASKAKSEFLANMSHEIRTPMNGVIGMTGLLLETDLNETQRRYAETVRSSGQALLAL 468

Query: 312 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
           +N++LD +K+ESGKLELEA++F+LR  LD+  S+ + K+++KG+E        VP+ LIG
Sbjct: 469 LNDILDFSKIESGKLELEALNFDLRDTLDNFASMMAFKAEEKGLEFICSADPDVPDNLIG 528

Query: 372 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
           DPGR RQI+TNL+GN++KFTE+G + V V + E  V   E                    
Sbjct: 529 DPGRIRQILTNLVGNAVKFTERGEVVVRVSIQESGVRRQETGD----------------- 571

Query: 432 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
               K  +T ++   T      S +   L  SV DTG GIP +    +F  F QV  S++
Sbjct: 572 ----KSQETGDKSQETGDKSQESEEFCMLRFSVRDTGIGIPEDKIGLLFQSFSQVDASVT 627

Query: 492 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 551
           R  GGTG+GL+IS+ L   M GE+G  SI   G+TF FT       +           +Q
Sbjct: 628 RKFGGTGLGLAISRQLAELMGGEVGVESIEGQGTTFWFTVPLSLAETC----------DQ 677

Query: 552 PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---SKII 608
             S+S++ +G++ALVVD      ++        G++ +   D    L ++ +        
Sbjct: 678 IPSMSADLRGLRALVVDDNATNREILLTRFLDWGLRPDEAKDGPTALGRLYTALAEDDPY 737

Query: 609 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 668
           ++ +++ ++   D       +   +KL      +L +++++     A    D +   + +
Sbjct: 738 HLAIIDMQMPGMDGEFLGRTIRADQKLQ---DVRLVMMSSAGMQGDARRMKD-IWFAAFL 793

Query: 669 MKPLRSSMLAASLQRAMGVGNKGNI----RNWELPSMSLRHLLLGRK--ILIVDDNNVNL 722
            KPLR   L   L   M      ++       E  S S +     RK  IL+ +DN  N 
Sbjct: 794 AKPLRHDELFDCLSLVMAGDEPQDLVTRHSAREEKSRSGKIDFSDRKARILLAEDNITNQ 853

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           +VA A LK +G +   V  G +A + L  +P   +D   MD+QM EMDG  AT+ IR  E
Sbjct: 854 QVALAMLKNFGLSADAVANGLEAIKALKTVP---YDLVLMDVQMLEMDGLAATRRIRAAE 910

Query: 781 -HNFNNRIRRGEVSIEAYEN-----------------VSNFHVPILAMTADVIQATYEEC 822
                  +R   +  E+  +                 +  F +PI+A+TA  +Q   E+C
Sbjct: 911 IRGRELEVRDQRLKSESQNSSIPESLNPLIPQSLNSRIPEFRIPIIALTAHAMQGYREQC 970

Query: 823 LRSGMDGYVSKPFEAEQLYREVSRFF 848
           L +GMD Y++KP E  QL   + ++ 
Sbjct: 971 LEAGMDDYLTKPLEPVQLAEMLDKWL 996


>gi|108805455|ref|YP_645392.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
            9941]
 gi|108766698|gb|ABG05580.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
            9941]
          Length = 1369

 Score =  293 bits (749), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 215/692 (31%), Positives = 337/692 (48%), Gaps = 115/692 (16%)

Query: 207  WPLLAISTSIG-----ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKS 261
            W LL++S   G     + VIA +        +    ++EE+   + E K++AEAA  AKS
Sbjct: 584  WVLLSVSLVTGENDEPLYVIAQV------QDITERKRIEEE---LREAKEQAEAASRAKS 634

Query: 262  QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKV 321
            +F+A +SHEIRTPMNGV+GM ++L+DT L   Q++Y RT ++SG+AL++++N++LD +K+
Sbjct: 635  EFVANMSHEIRTPMNGVIGMAELLLDTPLTPEQREYARTIRSSGEALLAILNDILDFSKI 694

Query: 322  ESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIIT 381
            E+G+L LE + F +   +++V+SL + ++  KG+EL  +I   VP  + GDP R RQ++T
Sbjct: 695  EAGRLSLERIPFEIHKEVEEVVSLLAPRAHAKGLELICFIEPGVPPLIKGDPFRLRQVLT 754

Query: 382  NLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTF 441
            NL+GN+IKFTE+G + V+  L               S +      P  +R          
Sbjct: 755  NLIGNAIKFTEEGEVVVSASL---------------SKEEKKKSAPAGERGGE------- 792

Query: 442  NQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGL 501
                            I L   V+D+G GI  E Q  +F  F Q   S +R +GGTG+GL
Sbjct: 793  ----------------IELRFEVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLGL 836

Query: 502  SISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF-------GNGSSTSNEHNS-----QQMN 549
            +IS+ LV  M GEIG  S P  GSTF F+A F            T  E        +   
Sbjct: 837  AISRQLVEMMGGEIGLKSSPKEGSTFHFSARFVLPEEEEEKSPKTPPEEGEGGGARRTRE 896

Query: 550  NQPNSVSSEFQGMKALVVDP----RPIRAK---VSRYHIQRLGIQVEVVSDQLQCLSQIA 602
             +         G++ LVVD     R I  +     R   + +G   E + +     + +A
Sbjct: 897  EEERGRRESLAGLRVLVVDDNATNRTILCRQLEAWRMEPKSVGGAQEAIRELEASGTFLA 956

Query: 603  SGSKIINMILVEQEVWEKD-----TSVSTLFVNNLRKLGCGFQS-KLFLLANSISSSRAN 656
            S S   ++++++ ++ E D       + +       K G  F + +L LL +    ++  
Sbjct: 957  SSSSGYDLVILDMQMPETDGLELARRIKSRLQEEEEKRGGAFSALRLMLLTSMDPQTKEK 1016

Query: 657  TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK---IL 713
                G ++ + + KP+R S L  ++   +    K   R   LP+        G++   IL
Sbjct: 1017 IKASG-TVEACLQKPVRQSQLYDAIA-TLFQKKKEEERPLPLPAHQKEEEKEGKERPLIL 1074

Query: 714  IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM------------------PPHQF 755
            + +DN VN +VAA+ LK+ G  V   + G++A + L                   P  ++
Sbjct: 1075 LAEDNPVNQQVAASMLKKLGYRVELAQNGEEALKKLFPPPSSPPSSSGREEGGGSPKKKY 1134

Query: 756  DACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815
             A  MDIQMP+MDG EAT+ IR  E     R+ R                PI+AM+A  +
Sbjct: 1135 AAVLMDIQMPKMDGLEATRRIRSKEEEGVLRLPR---------------TPIIAMSAHAM 1179

Query: 816  QATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
            Q   E  L++GMD Y+SKP + EQL   + RF
Sbjct: 1180 QEDRERALKAGMDHYISKPVKKEQLKEALERF 1211


>gi|302803079|ref|XP_002983293.1| hypothetical protein SELMODRAFT_117801 [Selaginella moellendorffii]
 gi|300148978|gb|EFJ15635.1| hypothetical protein SELMODRAFT_117801 [Selaginella moellendorffii]
          Length = 283

 Score =  293 bits (749), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 157/280 (56%), Positives = 197/280 (70%), Gaps = 3/280 (1%)

Query: 131 LGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGD 190
           +GG FD +SLVE LL QL+  QTI VNV D+TN S+P+ MYG N+ D     V  + FGD
Sbjct: 1   VGGAFDFKSLVENLLQQLSESQTIIVNVNDVTNKSNPLVMYGLNILDGNEIEVCQVEFGD 60

Query: 191 PFRKHEMRCRFKQKAPWPLLAI-STSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMEL 249
           PF K EMRC   +K       + +T+ GI+VI  LV  IF A  N I KVEE Y  M +L
Sbjct: 61  PFWKDEMRCDAGEKNLHSHSVVWTTTFGIVVIVLLVAQIFYAAGNCITKVEEGYCKMEDL 120

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGM-LDMLMDTELDVTQQDYVRTAQASGKAL 308
           K +AE+ADVAKSQFLATVSHEIRTPMNG LG+ +      +LD TQ+DY  TA  SGK L
Sbjct: 121 KVRAESADVAKSQFLATVSHEIRTPMNGALGVHVANAHGIKLDSTQKDYTHTALESGKQL 180

Query: 309 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 368
           +  INEVLDQAK+ESG++ELE V F L  ILD++L+LFS K++DK +ELA Y+S+RVP+ 
Sbjct: 181 IKHINEVLDQAKIESGRMELETVPFKLHTILDNILTLFSAKNKDKEIELAAYVSERVPDV 240

Query: 369 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 408
           L G P R   I+T+L+GNSIKFT+ GHIFV+++L E V D
Sbjct: 241 L-GHPVRLHLIVTSLVGNSIKFTDSGHIFVSMHLEENVND 279


>gi|350554177|ref|ZP_08923307.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
            700588]
 gi|349788353|gb|EGZ42356.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
            700588]
          Length = 1595

 Score =  292 bits (747), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 205/647 (31%), Positives = 325/647 (50%), Gaps = 110/647 (17%)

Query: 226  GHIFQATVNRIA--KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 283
            G+I   T  + A  +++E      +L  +AE A+ AKS+FLA +SHEIRTPMNGV+GM  
Sbjct: 891  GYISDVTERKHAEQRLQETTEHAKQLAVQAERANAAKSEFLANMSHEIRTPMNGVIGMTG 950

Query: 284  MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 343
            +L+D+EL+  Q+    T   S ++L+SLIN++LD +K+E+GKL+LEA+ FNL+ +L+D  
Sbjct: 951  LLLDSELNAEQRRQAETILNSAESLLSLINDILDFSKIEAGKLDLEALDFNLQYLLEDFA 1010

Query: 344  SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 403
            +  +G++ +KG+EL   ++   P  L GDPGR RQI+ NL+GN+IKFT +G + + V LV
Sbjct: 1011 AALAGRAYEKGLELFCVLAPDTPLYLRGDPGRVRQILNNLVGNAIKFTHQGEVGIHVSLV 1070

Query: 404  EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 463
            E   D++                                                 L  +
Sbjct: 1071 EHREDAVL------------------------------------------------LRFA 1082

Query: 464  VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 523
            V DTG GIP +  S +F  F QV  SI+RT+GGTG+GL+ISK L   M+G+IG  S   +
Sbjct: 1083 VTDTGIGIPPDKVSLLFQKFSQVDGSITRTYGGTGLGLAISKQLAEMMQGDIGVESQEGV 1142

Query: 524  GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 583
            GSTF FT   G G         Q+  +  ++       ++ALVVD  PI+ ++    ++R
Sbjct: 1143 GSTFWFTLSLGVG---------QEPTDARHAWGEPLPAVRALVVDDHPIQCELLCAILER 1193

Query: 584  LGIQVEVVSDQLQCLSQIASG---SKIINMILVEQE--VWEKDTSVSTLFVNNLRKLGCG 638
             G+ V    +    L +I +     K   ++L +Q+  + + +T   TL  +   +L   
Sbjct: 1194 RGVPVSSAGNSADALREIYAALAEHKPYQLLLTDQQMPIMDGETLGQTLQADP--RLADL 1251

Query: 639  FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV----------- 687
            ++    +L +S+SS+            + + KP+R   L A LQ  + +           
Sbjct: 1252 YR---VILPSSMSSAEDIERYHAAGFHAYLPKPIRQQELFAVLQALLALPPDRLTHTPII 1308

Query: 688  ---GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 744
               G +  I    +P    +      +IL+V+DN+ N +VA   L++ G     V  G++
Sbjct: 1309 SPRGPRAAIHAQVIPFAPNK-----VRILLVEDNSTNQQVALGILRKLGLKADAVGNGQE 1363

Query: 745  ATELL--MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 802
            A E +  +P   +D   MD+QMP MDG +AT+ IR ++                 +   N
Sbjct: 1364 AVETVINIP---YDLILMDVQMPVMDGLQATRAIRALD-----------------KAAIN 1403

Query: 803  FHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
              +PI+AMTA  +Q   E CL +GM+ Y+SKP    Q+   ++   P
Sbjct: 1404 TDIPIVAMTAHAMQGDKERCLAAGMNDYLSKPLVPHQVAETLALCLP 1450


>gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris
            DSM 8797]
 gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris
            DSM 8797]
          Length = 1362

 Score =  291 bits (744), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 200/619 (32%), Positives = 307/619 (49%), Gaps = 83/619 (13%)

Query: 226  GHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 285
            G +F A ++ I   ++    + + K+ AEAA  AKS FLAT+SHEIRTPMN V+GM ++L
Sbjct: 655  GFLFAAFIHDITVEKQAEEELRQAKEAAEAASRAKSAFLATMSHEIRTPMNAVIGMTELL 714

Query: 286  MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 345
            +DT+L+ TQ++Y+   Q SG++L+S+IN++LD +K+E+G+ +LE   F+LR  L D +  
Sbjct: 715  LDTDLNSTQREYLTMVQESGESLLSVINDILDFSKIEAGRFDLEKAPFHLRENLGDTMRS 774

Query: 346  FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 405
             + ++  K +ELA ++   VP+T++GD  R RQII NL+GN+IKFTE+G I + V     
Sbjct: 775  LAVRAHHKHLELAFHLDADVPDTIVGDRFRLRQIIVNLVGNAIKFTEEGEIVLDV----- 829

Query: 406  VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 465
                                                N D     F+S +   + L   V 
Sbjct: 830  ------------------------------------NYD-----FQSKNE--LQLHFVVR 846

Query: 466  DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 525
            DTG GIP + Q +IF  F QV  S++R   GTG+GL+I+  L+  M G+I   S    GS
Sbjct: 847  DTGIGIPEDKQQQIFQAFEQVDESMARRFSGTGLGLAIASRLIEMMGGKIWVNSEVGKGS 906

Query: 526  TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
             F FTA F        E   +++      + +E  G++ L+VD      ++    +    
Sbjct: 907  EFHFTARF--------ELTEEEVPANEPLLKAELDGLRVLIVDDNLTNCQILEEMLGSWN 958

Query: 586  IQVEVV---SDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642
            +Q + +   SD L  +          +++LV+  +   D       +     LG    S 
Sbjct: 959  MQTQSINRGSDALDVMHASQQSKHPFDLVLVDANMPVMDGFSVAKAIKQDSTLG----SA 1014

Query: 643  LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS 702
            + ++  S       +    + I + ++KPL+ S L  S+   +G+ N     +    +  
Sbjct: 1015 VIMMITSSDRQGEISRCKELGIAAHLIKPLKQSELFNSIAETLGM-NGTPQHDMRTATAD 1073

Query: 703  LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 762
            L   +   KIL+ +D+ VN K+A A LK  G  +  V  G  A        +FD   MD+
Sbjct: 1074 LAQRIPPLKILLAEDSLVNQKLALALLKPQGHEIAVVLNGSDAVN-ERKNREFDLILMDV 1132

Query: 763  QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 822
            QMPEMDG EAT+ IRE                  YE  +  HVPI+AMTA  ++   E C
Sbjct: 1133 QMPEMDGLEATRQIRE------------------YEQETGEHVPIIAMTAHAMKGDRERC 1174

Query: 823  LRSGMDGYVSKPFEAEQLY 841
            L +GMDGYVSKP    +L+
Sbjct: 1175 LEAGMDGYVSKPVRVRELF 1193


>gi|373458202|ref|ZP_09549969.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
           DSM 13497]
 gi|371719866|gb|EHO41637.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
           DSM 13497]
          Length = 748

 Score =  291 bits (744), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 193/609 (31%), Positives = 313/609 (51%), Gaps = 88/609 (14%)

Query: 247 MELKK---KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
           +ELKK   + E A+ AK +FLA +SHEIRTPMNG+LGM ++ ++T L   Q+DY+   ++
Sbjct: 212 IELKKAKEETERANKAKDEFLANMSHEIRTPMNGILGMTELALETRLTAEQRDYLNVVKS 271

Query: 304 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 363
           S +AL+++IN++LD +K+E+GKL+LE + FNL  ++ D++   + KS +K +ELA +I  
Sbjct: 272 SAEALLAIINDILDFSKIEAGKLDLEEIDFNLYDMIGDMIKPLAIKSNEKKIELAYFIDP 331

Query: 364 RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 423
            VP  + GDP R RQI+ NL+GN+IKFTEKG + + V   E + D I ++          
Sbjct: 332 DVPIFIKGDPIRLRQILINLLGNAIKFTEKGQVVLEVLKAERLDDKIILK---------- 381

Query: 424 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483
                                                   V DTG GIP E Q +IF  F
Sbjct: 382 --------------------------------------FGVHDTGIGIPREVQDKIFESF 403

Query: 484 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS---TS 540
           +Q   SI+R  GGTG+GL+I   LV  M G+I   S     ST+      G G+S   T+
Sbjct: 404 VQADTSITRKFGGTGLGLAICMRLVRMMNGKIWLES----PSTYPSRKKGGPGTSFFFTA 459

Query: 541 NEHNSQQMNNQPNSV-SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS 599
             H ++     P  +     +G+  L++D  PI     +  +++  +QV       + L 
Sbjct: 460 QLHEAEHRETTPYRILQKNLKGLNVLLIDDNPINRSYFQKILEKNKLQVTTAESAFKAL- 518

Query: 600 QIASGSKIINMILVEQEVWEKDT-SVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 658
           +I   ++  ++I+ + ++ E D   +ST     +R L    +  + LL +  S  R ++ 
Sbjct: 519 EILKTNQRFDLIITDAQMPEMDGFELST----QIRALKNYKKVPIILLTS--SGMRGDSE 572

Query: 659 -TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDD 717
               + I + + KP++ +    +LQ  +G+  +  ++   +   ++R +L    IL+ +D
Sbjct: 573 RCKQIGINAYLPKPVKLTDFLKALQVTLGLPQEEEVQPSLVTQYTVREVLPRLHILVAED 632

Query: 718 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
           N VN K+A   L++ G      + G +  E L   H +D   MD+QMPEMDG +AT+ IR
Sbjct: 633 NPVNQKLAIRLLEKNGYYADIAKNGLEVLEKLKKNH-YDLILMDVQMPEMDGLQATQKIR 691

Query: 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
           E+E+                      H+PI+A+TA  ++   + CL + MDGYVSKP   
Sbjct: 692 ELEN-------------------GKSHIPIIALTAHAMKKDIDMCLNAAMDGYVSKPIRK 732

Query: 838 EQLYREVSR 846
           E+L++E+ R
Sbjct: 733 EELFKEIER 741


>gi|226875177|gb|ACO88936.1| cytokinin histidine-kinase receptor 1 [Vitis vinifera]
          Length = 235

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 154/240 (64%), Positives = 184/240 (76%), Gaps = 18/240 (7%)

Query: 278 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337
           VLGML MLMD+ LD  QQDY  TA ASGK L+SLINEVLDQAK+ESG+LELEAV F+LRA
Sbjct: 1   VLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINEVLDQAKIESGRLELEAVPFDLRA 60

Query: 338 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHI 396
            LD+VLSLFSGKS +KG+ELAVYISD+VPE +IGDPGRFRQIITNL+GNSIKFT +KGHI
Sbjct: 61  ALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQIITNLVGNSIKFTHDKGHI 120

Query: 397 FVTVYLVEEVVDSIEVETEL------------SSSKNTLSGYPVADRCHSWKGFKTFNQD 444
           FV+V+L +EVV   ++  E+            ++S NTLSG+PV +R  SW+ FK  +  
Sbjct: 121 FVSVHLADEVVGPPDLRDEVLRQSLNIVHDSSNNSYNTLSGFPVVNRWKSWEKFKKLS-- 178

Query: 445 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSIS 504
             T   + +S  +I L+V+VEDTG GIP EAQSRIF PFMQ   S SRT+GGTGIGLSIS
Sbjct: 179 -CTDSMEETS--IIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGTGIGLSIS 235


>gi|298528353|ref|ZP_07015757.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298512005|gb|EFI35907.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1437

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 199/635 (31%), Positives = 317/635 (49%), Gaps = 81/635 (12%)

Query: 253  AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
            AE A  AKS+FLA +SHEIRTPMNGV+GM  +L+DT+LD  QQ Y RT ++S ++L+++I
Sbjct: 692  AEEATKAKSEFLANMSHEIRTPMNGVIGMTGLLLDTDLDSEQQHYARTVRSSAESLLTVI 751

Query: 313  NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
            N++LD +K+E+G+L++E V F+L A+L D   + + K+++KG+EL   +   VP  + GD
Sbjct: 752  NDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAEEKGLELICSMDPNVPSMVRGD 811

Query: 373  PGRFRQIITNLMGNSIKFTEKGHIFVTV-YLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
             GR RQI+ NL+GN++KFTE G + + V  +V +  ++   ET+ +S             
Sbjct: 812  SGRLRQILMNLVGNAVKFTEHGEVEIKVSRMVNDECENPNAETQENS------------- 858

Query: 432  CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
                        D   S F +  + L++   SV DTG GIP + Q  +F  F QV  S +
Sbjct: 859  -----------HDLYRSSFTTQHSCLMHF--SVRDTGIGIPEDKQDSLFESFSQVDASTT 905

Query: 492  RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 551
            R  GGTG+GL+IS+ L   M G  G  S+   GSTF FT   G       +H  QQ    
Sbjct: 906  RKFGGTGLGLAISRQLAEIMGGTAGLESVEGRGSTFWFTVRLG------IQHEQQQERPA 959

Query: 552  PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV---SDQLQCLSQIASGSKII 608
            P       QG++ L+VD      +  R  +   G++ E     S  L  L Q  + +   
Sbjct: 960  PAC----LQGVRTLIVDDNSTNRETLRVRLGSWGMRSEEAANGSTALSMLHQAKADNDPF 1015

Query: 609  NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 668
             + +++ ++ + D         N+++ G    ++L +++++   +            S++
Sbjct: 1016 EVAVLDMQMPDMDGET---LGRNIKEDGQLKDTRLIMMSSATGQTGDAKRLHEAGFDSIM 1072

Query: 669  MKPLRSSMLAASLQRAMGVGNKGNI-----RNWELPSMSLRHLLLGRKILIVDDNNVNLK 723
             KP+  S L A L++ +   +  ++        E P           +IL+ +DN VN +
Sbjct: 1073 NKPVLPSELYACLEKILAKTDTADLVAEHAEREETPKGYPDFSGTKARILVAEDNMVNQQ 1132

Query: 724  VAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATKIIREME- 780
            VA   LK+ G     V  G++    L  +P   +D   MD+QMPEMDG +AT+ IR  E 
Sbjct: 1133 VALGILKKMGLRADAVANGREVLHALQNIP---YDLVLMDVQMPEMDGLKATRRIRASEV 1189

Query: 781  --HNFNNRIRRGEVSIEAYENVS-------------------------NFHVPILAMTAD 813
                   R ++ EVS +  E+ S                         N  +PI+AMTA 
Sbjct: 1190 RGQKSEIRSQKSEVSDQRLESESQNSSIPESPNSSTPKSPNSSIPESQNPRIPIIAMTAG 1249

Query: 814  VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             +Q   E C+ +GMD Y +KP   ++L R + ++ 
Sbjct: 1250 AMQEDRERCIEAGMDDYTAKPVNPDELARVLEKWL 1284


>gi|108804107|ref|YP_644044.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
 gi|108765350|gb|ABG04232.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
          Length = 1069

 Score =  290 bits (741), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 208/656 (31%), Positives = 326/656 (49%), Gaps = 106/656 (16%)

Query: 238 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           ++EE+   + E K++AEAA  AKS+F+A +SHEIRTPMNGV+GM ++L+DT L   Q++Y
Sbjct: 310 RIEEE---LREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDTPLTPEQREY 366

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
            RT ++SG+AL++++N++LD +K+E+G+L LE + F +   +++V+SL + ++  KG+EL
Sbjct: 367 ARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAHAKGLEL 426

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
             +I   VP  + GDP R RQ++TNL+GN+IKFTE+G + V+V L +E   +        
Sbjct: 427 ICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEEGEVVVSVSLSKEEKSA-------- 478

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                    P  +R                          I L   V+D+G GI  E Q 
Sbjct: 479 ---------PAGERGGE-----------------------IELRFEVKDSGIGIQEEQQK 506

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF---- 533
            +F  F Q   S +R +GGTG+GL+IS+ LV  M GEIG  S P  GSTF F+A F    
Sbjct: 507 HLFEAFSQADASTTRRYGGTGLGLAISRQLVEMMGGEIGLKSSPKEGSTFHFSARFVLPE 566

Query: 534 ---GNGSSTSNEHNS-----QQMNNQPNSVSSEFQGMKALVVDP----RPIRAK---VSR 578
                   T  E        +    +         G++ LVVD     R I  +     R
Sbjct: 567 EEEEKSPKTPPEEGEGGGARRTREEEERGRRESLAGLRVLVVDDNATNRTILCRQLEAWR 626

Query: 579 YHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKD-----TSVSTLFVNNLR 633
              + +G   E + +     + +AS S   ++++++ ++ E D       + +       
Sbjct: 627 MEPKSVGGAQEAIRELEASGTFLASSSSGYDLVILDMQMPETDGLELARRIKSRLQEEEE 686

Query: 634 KLGCGFQS-KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN 692
           K G  F + +L LL +    ++      G ++ + + KP+R S L  ++   +    K  
Sbjct: 687 KRGGAFSALRLMLLTSMDPQTKEKIKASG-TVEACLQKPVRQSQLYDAIA-TLFQKKKEE 744

Query: 693 IRNWELPSMSLRHLLLGRK---ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 749
            R   LP+        G++   IL+ +DN VN +VAA+ LK+ G  V   + G++A + L
Sbjct: 745 ERPLPLPAHQKEEEKEGKERPLILLAEDNPVNQQVAASMLKKLGYRVELAQNGEEALKKL 804

Query: 750 M------------------PPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 791
                              P  ++ A  MDIQMP+MDG EAT+ IR  E     R+ R  
Sbjct: 805 FPPPSSPPSSSGREEGGGSPKKKYAAVLMDIQMPKMDGLEATRRIRSKEEEGVLRLPR-- 862

Query: 792 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                         PI+AM+A  +Q   E  L++GMD Y+SKP + EQL   + RF
Sbjct: 863 -------------TPIIAMSAHAMQEDRERALKAGMDHYISKPVKKEQLKEALERF 905


>gi|334343013|ref|YP_004555617.1| integral membrane sensor hybrid histidine kinase [Sphingobium
           chlorophenolicum L-1]
 gi|334103688|gb|AEG51111.1| integral membrane sensor hybrid histidine kinase [Sphingobium
           chlorophenolicum L-1]
          Length = 914

 Score =  289 bits (739), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 199/618 (32%), Positives = 295/618 (47%), Gaps = 87/618 (14%)

Query: 234 NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT 293
            R  ++EE    +   K +AE A  AKSQFLA +SHEIRTPMNGV+G  ++L DT L+ +
Sbjct: 367 ERTIQLEESETELRAAKNRAEEATRAKSQFLANMSHEIRTPMNGVIGAAELLNDTRLNAS 426

Query: 294 QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDK 353
           Q++Y+     S  AL+ LIN++LD +K+E+G+LELE V+F+LR  L D L  F+G++ +K
Sbjct: 427 QREYLTMITQSADALLHLINDILDFSKIEAGRLELEHVAFSLRDELADTLQAFAGRATEK 486

Query: 354 GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 413
           G+ELA +++  VP+ L GDP R RQ++ NL+GN+++FTE+G + + V  VE + D     
Sbjct: 487 GIELACHVALDVPDALEGDPHRLRQVVINLVGNALRFTERGEVVMDVA-VERMEDQ---- 541

Query: 414 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 473
                               +W  F                        +V DTG GI  
Sbjct: 542 -------------------QAWLRF------------------------AVSDTGPGIAA 558

Query: 474 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533
           + +  IF  F Q   S +R  GGTG+GL+I+  LV  M G +   S    GS F FT  F
Sbjct: 559 DKRKLIFEAFSQADTSFTRRFGGTGLGLTIASQLVQLMGGRLELDSCVGRGSVFHFTIAF 618

Query: 534 GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEV 590
                      +Q     P +      G+  L+VD      ++    I+  G++   VE 
Sbjct: 619 A---------LAQGETPHPPAEQPSLHGLPVLIVDDNATNRRILDEMIRGWGMKPLAVES 669

Query: 591 VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
               L  L   A   + + ++L++  + + D       V      G G +    ++ +S 
Sbjct: 670 GPKALAALRNAAGIGRPLRLVLLDMMMPDMD----GFAVAKEIARGGGDERPAVIMLSSA 725

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                        I + ++KP+R S L  ++   + V     +R    P     H     
Sbjct: 726 QKDEMARRNWATGIAAFLLKPVRQSELLEAIFAVLKV----TVREETAPPQPAPHDRPSL 781

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            +L+ +DN VN ++A   L++ G  V  V  G +A E L     FD   MD+QMPEMDGF
Sbjct: 782 HVLVAEDNAVNQRLALRLLEKRGHRVKIVGDGAQAVEALA-QDSFDVVLMDVQMPEMDGF 840

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
           +AT  IRE E        RG          +  H+PI+AMTA  ++   E CL +GMD Y
Sbjct: 841 QATAAIRERE--------RG----------TGQHMPIVAMTAHAMRGDRERCLAAGMDDY 882

Query: 831 VSKPFEAEQLYREVSRFF 848
           +SKP  AE  Y  V   F
Sbjct: 883 ISKPLRAEDFYEVVEGRF 900


>gi|389875458|ref|YP_006373193.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
 gi|388530413|gb|AFK55609.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
          Length = 1592

 Score =  288 bits (738), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 200/602 (33%), Positives = 304/602 (50%), Gaps = 62/602 (10%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K  AE A  AKS FLA +SHEIRTPMNGV+GM  +L+ T LD  Q+ Y  T + S +AL+
Sbjct: 892  KVMAETASQAKSDFLANMSHEIRTPMNGVMGMTQILLGTPLDDEQRGYAETVRDSAEALL 951

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
             +I+++LD +K+E+ ++ELE + F+L  +LD V ++ + +++DKG+E+A           
Sbjct: 952  VVIDDILDISKLEADRVELEHLPFDLTGLLDGVAAILAPRARDKGIEIACMAEPDTGTGW 1011

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GDP R RQI+ NL GN++KFTE+GH+ VTV       D   V  E        SG    
Sbjct: 1012 LGDPTRLRQILLNLAGNAVKFTERGHVAVTVR------DLGPVACEDCEDVGNESG---- 1061

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
            + C    G       G+  P      D   L+  V DTG G+  +  +++F  F Q   S
Sbjct: 1062 EDCEGRSG-------GADRP----GTDHRRLLFEVRDTGIGMSADQTAKLFHKFAQADAS 1110

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            I+R  GG+G+GL I   LV  M G I   S P  GS F F       +  +     + + 
Sbjct: 1111 ITRRFGGSGLGLVICLKLVELMGGTISVDSEPGRGSVFRFEVPLERTTLPAPPEGGEGLE 1170

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSK 606
                   +  +G +AL+VD  P+  +V  +H+  LG+++   +D    L  L + A    
Sbjct: 1171 -------AGLRGRRALIVDDLPLNRRVLAHHLGELGMEISEATDVAESLHLLEKAAQTGT 1223

Query: 607  IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS-KLFLLANSISSSRANTSTDGVSIP 665
             +++++ +  +   D ++   ++    +L   FQ+ +  L A+S  S+ A    D     
Sbjct: 1224 PVDLVVTDLNLGGMDGAILGTWL----RLHPRFQTVRTILAASSPPSAEAARVFD----- 1274

Query: 666  SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 725
            +VI KP+R   L  +L R+ G+            +     L  GR++L+V+DN VN  VA
Sbjct: 1275 AVITKPIRRGELITALARSFGLSPPPAA---SAEAPPSAPLTAGRRVLLVEDNTVNQAVA 1331

Query: 726  AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785
            +  L++ G  V  VE G +A E       FD  FMD+QMP MDG EAT+ IR  E   + 
Sbjct: 1332 STILEKQGYRVAVVENGAEAIEACR-ADDFDLVFMDVQMPVMDGMEATRRIRTAEAE-SG 1389

Query: 786  RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 845
            R R                 PI+AMTA+ +    EE + +GMD +V KPF AE+L    +
Sbjct: 1390 RPR----------------TPIVAMTANAMAGMREEYMAAGMDDFVPKPFRAEKLLAMAA 1433

Query: 846  RF 847
            R+
Sbjct: 1434 RW 1435


>gi|320160535|ref|YP_004173759.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
 gi|319994388|dbj|BAJ63159.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
          Length = 1819

 Score =  288 bits (736), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 200/607 (32%), Positives = 302/607 (49%), Gaps = 110/607 (18%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            + +A  A   KS+FLAT+SHEIRTP+N V+GM ++L+DT L+  Q D+ R  + SGK+L+
Sbjct: 1142 RDQALEASRLKSEFLATMSHEIRTPLNAVIGMSEILLDTPLNEEQADFARIIRDSGKSLL 1201

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            S+IN++LD +K+E+G++ LE+V F L  ++D V+ +F+   Q K + L  +I+  VP  +
Sbjct: 1202 SIINDILDFSKIEAGRMTLESVEFQLLPLVDSVIEMFASIVQKKNLHLFGWIAPDVPNIV 1261

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GDP R RQ++ NL+GN +KFTE+GH+ V++ L E + + + +  E              
Sbjct: 1262 VGDPVRLRQVLINLVGNGVKFTEQGHVSVSISLQERLENEVILRVE-------------- 1307

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                              V DTG G+   A+ R+FTPF Q   S
Sbjct: 1308 ----------------------------------VHDTGIGLSETARKRLFTPFTQADGS 1333

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            ++R  GGTG+GL+ISK LV  M GEIG  S+   GSTF FT       S   E       
Sbjct: 1334 MTRRFGGTGLGLAISKSLVELMGGEIGVESVEGQGSTFWFTVTL----SVRPE------- 1382

Query: 550  NQPNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV---VSDQLQCLSQIASGS 605
             QP SV  E F G +  V+   P+        +    +QV     V D ++CL + A   
Sbjct: 1383 -QPASVEWEAFAGKRVFVLSHDPVEKHFLETMLSGWQMQVHSGCEVEDAVECLRKDAHFD 1441

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
              I            D S+    + NL  L         LLAN ++      + + +   
Sbjct: 1442 LAI-----------LDISLPADLLRNL--LSHDISRATILLAN-LNERDKCVAYEQLERV 1487

Query: 666  SVIMKPLRSSMLAASL----------QRAMGVGNKGNIRNWELPSMSLRHLLLGRKI-LI 714
              I++P+R S+L  ++          +R +      +  +++ P   +     G KI L+
Sbjct: 1488 VTILRPVRQSVLMETMRSLFMDHLTGERVLSYSIVVDEPDFDFPPQHVEP--DGEKIVLL 1545

Query: 715  VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM-PPHQFDACFMDIQMPEMDGFEAT 773
             +DN+ N ++A   LKR G     V  G++A E+ M  P ++ A  MD QMP MDGFEAT
Sbjct: 1546 AEDNSANQRLATVQLKRLGYQADLVTTGEQALEMYMRHPERYLAILMDCQMPVMDGFEAT 1605

Query: 774  KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
            + IRE EH    R R               H+PI+AMTA+ +Q   E C+++GMD Y+SK
Sbjct: 1606 RRIREFEH---TRQR---------------HIPIIAMTANAMQGDREACIQAGMDDYISK 1647

Query: 834  PFEAEQL 840
            P   ++L
Sbjct: 1648 PVSIQRL 1654


>gi|87308947|ref|ZP_01091085.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Blastopirellula marina DSM 3645]
 gi|87288290|gb|EAQ80186.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Blastopirellula marina DSM 3645]
          Length = 837

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 205/663 (30%), Positives = 322/663 (48%), Gaps = 97/663 (14%)

Query: 203 QKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQ 262
           + A +  LAI    G   + S+  H+     + +  + +D   +   K+ A+AA+ AK Q
Sbjct: 121 RDAAYEPLAIRRQDGTFRVVSV--HMLIQAQSHLLAIAKDV--IQSQKESADAANRAKGQ 176

Query: 263 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVE 322
           FLA +SHEIRTPMNG++GM ++L++TEL   Q +Y++  + S   LVS+IN++LD +K+E
Sbjct: 177 FLANMSHEIRTPMNGIIGMTELLLETELAPQQHEYLQMIKTSADCLVSVINDILDFSKIE 236

Query: 323 SGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITN 382
           +GKLE+E++ F LR  L D++   + ++  KG+EL  ++   VP  + GDPGR RQI+ N
Sbjct: 237 AGKLEIESIPFQLRENLGDLMKTLAFRAHGKGLELVAHVRPDVPWRMTGDPGRLRQILVN 296

Query: 383 LMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 442
           L+GN+IKFTE G I V V      +D I                                
Sbjct: 297 LVGNAIKFTEHGEIVVRVD-----IDEI-------------------------------- 319

Query: 443 QDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLS 502
                     S  D + L  +V DTG GIP  A  +IF  F Q   + +R  GGTG+GLS
Sbjct: 320 ----------SETDAL-LHFTVCDTGIGIPEAALQKIFAAFEQADGTTTRKFGGTGLGLS 368

Query: 503 ISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGM 562
           I   LV  M G+I   S  ++GS F FTA  G  +++ +E +             + + +
Sbjct: 369 ICSRLVELMHGKIWVESQVHVGSQFHFTAQLGIDANSYDERHIP---------PDDCRQL 419

Query: 563 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS--GSKIINMILVEQEVWEK 620
             L+VD      ++    +   G+Q  V+   ++ +S  A    S    +++++Q++   
Sbjct: 420 NVLIVDDNDTCGEIIAEMLANWGMQPTVIGGAVEAISLYAEEVTSPKFQLLIIDQQM--- 476

Query: 621 DTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAAS 680
                T  +  ++K   G  +K  LL    +  +  T+     + +++ KP++ S L  +
Sbjct: 477 PVLEGTELLERIQKSPRGAAAKSILLTTG-TFDKEPTNPLQARVDAILSKPIKQSDLFDT 535

Query: 681 LQRAMGVGNKGNIRNWEL---PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVV 737
           L   MG G  G++        P +       GR+IL+ +DN VN K+A   L++ G  V 
Sbjct: 536 LMNVMGHGVAGDLATQNAGAEPKLG----SWGRRILLAEDNLVNQKLAVLLLEKRGHLVT 591

Query: 738 CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAY 797
               GK+A E       FD   MD+QMP +DG  AT  IR                   +
Sbjct: 592 VASDGKQAVE-AWKEGGFDLVLMDVQMPILDGMAATTEIRR------------------H 632

Query: 798 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR----FFPPIPD 853
           E  +   +PI+AMTA  ++   E CL +GMDGYV+KP  A+ LY  +      F PP  +
Sbjct: 633 ETRTALRIPIIAMTAHAMKGDRERCLEAGMDGYVTKPINAQALYDAIDEALLSFPPPTHN 692

Query: 854 RSP 856
            +P
Sbjct: 693 ETP 695


>gi|372272319|ref|ZP_09508367.1| multi-sensor hybrid histidine kinase [Marinobacterium stanieri S30]
          Length = 1153

 Score =  287 bits (735), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 196/623 (31%), Positives = 310/623 (49%), Gaps = 100/623 (16%)

Query: 232  TVNRIAKVEEDYHG-MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL 290
            T+ R   + + Y   +++ +++A  +  AKS+FLA +SHEIRTPMNG+LGML++++D +L
Sbjct: 466  TIFRDITLRKQYESQLVQARQEALQSTQAKSEFLANMSHEIRTPMNGILGMLELVLDADL 525

Query: 291  DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKS 350
               Q+DY+R A +SG+ L++L+N +LD +KVE+GK+ELE + FNLR  L++   LF+ ++
Sbjct: 526  PPEQKDYIRIANSSGQTLLALLNSILDLSKVEAGKMELEHLDFNLRETLEETTKLFAPQA 585

Query: 351  QDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 410
            Q KG+E+A  I D VPE   GDP R RQ+ITNL+GN+IKFT++G I +   + +E     
Sbjct: 586  QGKGLEIAALIDDSVPEYANGDPTRLRQVITNLLGNAIKFTDQGEITLAADVTQE----- 640

Query: 411  EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
                              AD+  SW+                       L + + DTG G
Sbjct: 641  ------------------ADQ--SWR-----------------------LHIGIRDTGIG 657

Query: 471  IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
            I  +AQ RIF  F Q   S +R +GGTG+GL++S+ +  RM G+I   S  + GSTF FT
Sbjct: 658  IAADAQERIFEGFTQADGSTTRRYGGTGLGLTLSRRIATRMGGQIWLESTLDQGSTFHFT 717

Query: 531  AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 590
            A        + E  +  + N+      + +G++AL+VD +     + +      GI  + 
Sbjct: 718  ARL----KPAKEPEALFIPNE------DLRGLRALIVDDKVTNRVILQRFCDAWGIYHQS 767

Query: 591  VSDQLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLA 647
                +  L+++   A   K  + +L +  + + D       ++   +LG        LL 
Sbjct: 768  ADSGVNALAKLELAAEQGKAFDCVLSDMMMPDMDGVEVARQIHANAQLG----DLKLLLI 823

Query: 648  NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM--------GVGNKGNIRNWELP 699
             S +               ++ KP+    L  +L++ +             G + +   P
Sbjct: 824  TSYTGRGLRDKARLAGFDRLLPKPIGRRELHDALEQVLLGPAQTPASAPASGALEHSATP 883

Query: 700  SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 759
                     G +IL+ +DN VN +VA+  L+++G  VV  + G +A E       FD   
Sbjct: 884  G--------GLRILLAEDNQVNRQVASTHLEKFGCTVVSAKNGAEALERFC-QQPFDLVL 934

Query: 760  MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
            MD QMP MDG EAT+ IR+         R GE   ++         PI+AMTA   +   
Sbjct: 935  MDCQMPVMDGLEATRAIRQ---------REGEQGSDS--------TPIIAMTAFSSEQNL 977

Query: 820  EECLRSGMDGYVSKPFEAEQLYR 842
             +C  +GMDG + KPF  E LY+
Sbjct: 978  ADCRAAGMDGKIGKPFRPEALYQ 1000


>gi|445497335|ref|ZP_21464190.1| hybrid signal transduction histidine kinase J [Janthinobacterium sp.
            HH01]
 gi|444787330|gb|ELX08878.1| hybrid signal transduction histidine kinase J [Janthinobacterium sp.
            HH01]
          Length = 1203

 Score =  287 bits (735), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 231/824 (28%), Positives = 384/824 (46%), Gaps = 139/824 (16%)

Query: 67   DMLSGKEDRENVLRARASGKGVLTAPFRLLK----TNRLGVILTFAVYKRELPSNA--TP 120
            DM+S    R  +L A  +G+ VL+A   L++      + G ++ F +Y++        T 
Sbjct: 469  DMMSDPIRRAALLEAARTGEPVLSARVVLVQNAGNAGQPGFLMYFPIYRKSAAPGVVLTS 528

Query: 121  NERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNV-SDDG 179
             +R+ A  GY       + ++  LL    + Q I + ++D  + +    +Y S+  SDD 
Sbjct: 529  AQRMAALQGYSYSPIRADDMMAGLLGP--ADQAIQLEIFDGKDTTPDARLYASSRRSDD- 585

Query: 180  LWLVSTLNFGDPFRK--------HEMRCRFKQKAPWPLLAISTSIG------ILVIASLV 225
                 +L + +P+ +        H    RF       L A   SI       +L+  +++
Sbjct: 586  ----DSLQYPNPYLRTAPLVLLHHRWTLRFTS-----LPAFENSIDRQKSHIVLLAGAII 636

Query: 226  GHIFQATVN---------------RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHE 270
              +F   V                + A + E    ++  +  AEAA  AKS+F+A +SHE
Sbjct: 637  SLLFFGVVRALTARQAYAAALAEEKTAALRESESSLIVARDLAEAASRAKSEFVANMSHE 696

Query: 271  IRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEA 330
            IRTP+N VLGM  +L +T L   QQ Y++  ++SG +L+S++N+VLD +K+E+G++EL  
Sbjct: 697  IRTPLNAVLGMTHLLNNTSLSPDQQKYLKMIRSSGNSLLSILNDVLDFSKIEAGRMELAP 756

Query: 331  VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKF 390
              F L+A+L+ + ++ +  S +K +ELA+ +   VP++L+GD  R +QI+ NL+GN+IKF
Sbjct: 757  APFQLQAVLEAIATIMTVNSGEKDLELAIGVEADVPQSLLGDGHRLQQILINLVGNAIKF 816

Query: 391  TEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPF 450
            TEKG + V   LVE   D+                                  DG+ +  
Sbjct: 817  TEKGSVSV---LVERTGDA--------------------------------ATDGTAT-- 839

Query: 451  KSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGR 510
                     L  +V D+G GIP +  +++F PF Q   S++R  GGTG+GL IS+ +   
Sbjct: 840  ---------LRFTVRDSGIGIPPDQLAQLFAPFSQADASMTRRFGGTGLGLVISRRIAAL 890

Query: 511  MKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPR 570
            M G I   S    GS FT T                Q  ++P    +       LVVD  
Sbjct: 891  MGGAIEVQSTSGAGSAFTLTVPL-------------QRTDEPPPQGALLAPQHLLVVDDD 937

Query: 571  PIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVN 630
            P+ A      I   G   +      Q L+ + S +   + +LV+   W+         + 
Sbjct: 938  PLGADYLCRTIVARGWSSDRAGSGEQALALLRSAATRYDAVLVD---WDMPGMNGLDTMQ 994

Query: 631  NLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNK 690
             +R         + L+ ++    +   +    +  +V++KP+  + L  +LQ A+   NK
Sbjct: 995  AIRAAMPDNCPAVILMVSAFGQGKLLHTQGAEAANAVLLKPVTMARLNETLQLAL---NK 1051

Query: 691  GNIRNWELPSMSLRHLLL----GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT 746
              +                   G +IL+V+DN +N  VA + L   GA++  V+ G+ A 
Sbjct: 1052 APVVASAGAGADAGAPAGVRIDGVRILLVEDNPINQLVAQSMLSHAGASIDSVDNGRAAL 1111

Query: 747  ELL-MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 805
            +LL    H++D   MD+QMPEMDGFEAT  I            RGE+ +E         +
Sbjct: 1112 DLLRTDAHRYDLVLMDVQMPEMDGFEATTRI------------RGELKLE---------L 1150

Query: 806  PILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
            P+LAMTA V+ +  E+C+ SGM+ +++KP + EQ+ R ++R  P
Sbjct: 1151 PVLAMTAGVMLSEREQCIASGMNDFIAKPIDVEQMLRAIARNLP 1194


>gi|344940937|ref|ZP_08780225.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|344262129|gb|EGW22400.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 966

 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 195/637 (30%), Positives = 319/637 (50%), Gaps = 94/637 (14%)

Query: 230 QATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE 289
           Q  +NR ++       + E + +A AAD +KS+FL+ +SHEIRTPMN ++GM  + + T+
Sbjct: 279 QKVINRTSE-------LAEARDQAIAADKSKSEFLSMMSHEIRTPMNAIIGMTRLALQTD 331

Query: 290 LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGK 349
           L   QQDY+   Q S +AL+ +IN++LD +K+E+GKLELE ++FNL  +L+D+ SL SGK
Sbjct: 332 LTAKQQDYLTKVQISSRALLGIINDILDFSKIEAGKLELETIAFNLDDVLNDLFSLMSGK 391

Query: 350 SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 409
           +++KG+++    +D VP  LIGDP R  Q++ NL+ N++KFT +G               
Sbjct: 392 AEEKGLKIRFITADDVPSDLIGDPLRLGQVLLNLVNNAVKFTSRG-------------GD 438

Query: 410 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469
           ++++  L+     +                              SAD I L  SV+DTG 
Sbjct: 439 VDIKVALAEGAEQV-----------------------------KSADQIRLEFSVKDTGI 469

Query: 470 GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 529
           G+  E    +F  F Q   S +R +GGTG+GL+I K +V  M G I   S    GSTF F
Sbjct: 470 GLTTEQIGGLFQSFNQADKSTTRKYGGTGLGLAICKRMVDMMGGVITVNSEIGQGSTFIF 529

Query: 530 TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 589
           TA+F      S ++++             F+G+KALVVD           H++ L  QV 
Sbjct: 530 TAIFEQPYEVSQKYSASH---------DAFRGVKALVVDSDETSRNALCLHLKSLFFQVT 580

Query: 590 VVSDQLQCLSQI--ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLA 647
            VS   Q +  +  A       ++L++  + + D       + N  ++ C     + +  
Sbjct: 581 SVSTGEQAIQLLENACAEDPYRLVLMDWNLPKMDGISVARHIKNSLEIAC-IPHIIIVTT 639

Query: 648 NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR--- 704
           +S         +  +++   + KP+ +S L +++  A    N+ +   +  PS   R   
Sbjct: 640 HSREDVVHVQRSKDLNLDGFLAKPVHASALFSAVVEAF---NQTDFDEYP-PSQVRRPGT 695

Query: 705 -----HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 759
                H + G K+L+V+DN++N ++A   L++ G  V     G+ A + +   + FDA  
Sbjct: 696 GNEKLHQIKGAKLLLVEDNHINQQIAKETLEQEGFEVSIASDGRDAVQKIRTCY-FDAVL 754

Query: 760 MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
           MD++MP MDG+EAT+IIR  E  F++                   +PI+AMTA  +    
Sbjct: 755 MDLEMPIMDGYEATRIIRS-EAQFSD-------------------LPIIAMTAHAMNDVR 794

Query: 820 EECLRSGMDGYVSKPFEAEQLYREVSRFFPPIPDRSP 856
           E+CL  GM+GYV+KP + ++L   +     P   ++P
Sbjct: 795 EKCLHIGMNGYVTKPIDVDELLANLIDLIKPELRKTP 831


>gi|350551908|ref|ZP_08921118.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
            700588]
 gi|349795838|gb|EGZ49631.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
            700588]
          Length = 1531

 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 200/622 (32%), Positives = 297/622 (47%), Gaps = 109/622 (17%)

Query: 252  KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
            KA+ A  AKS+FLA +SHEIRTPMNGV+GM  +L+DTEL+  Q+ Y  T +AS +AL++L
Sbjct: 867  KAQQASQAKSEFLANMSHEIRTPMNGVIGMTGLLLDTELNGEQRHYANTVKASAEALLAL 926

Query: 312  INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
            IN++LD +K+E+GKL+LE + F+LR  LDD   + + K+++KG+E        VP  L G
Sbjct: 927  INDILDFSKIEAGKLDLETLDFDLRTTLDDFAMMMAFKAEEKGLEFICAADVDVPVLLCG 986

Query: 372  DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
            DPGR RQI+TNL+ N+IKFT +G + V V  V                            
Sbjct: 987  DPGRLRQILTNLVSNAIKFTHQGEVAVRVSCVH--------------------------- 1019

Query: 432  CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
                                 + A   +L  SV DTG GIP +   R+F  F QV  SI+
Sbjct: 1020 ---------------------TDAQTAHLRFSVRDTGIGIPKDKMDRLFQSFSQVDASIT 1058

Query: 492  RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 551
            R  GGTG+GL+IS+ L   M GEIG  S+   GSTF FT   G           Q+ + Q
Sbjct: 1059 REFGGTGLGLAISRQLAILMGGEIGVDSVQGEGSTFWFTVKLG----------CQEGDAQ 1108

Query: 552  PNS--VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
              S  + +   G++AL+VD      ++    ++   ++     D  Q L+ +  G     
Sbjct: 1109 AESTLLIASLHGVRALIVDDNATNREILEQRLKHWQMRTSSACDGPQALALLYQG----- 1163

Query: 610  MILVEQEVWE---KDTSVSTLFVNNLRKL---GCGFQSKLFLLANSISSSRANTSTDGVS 663
              L EQ+ ++    D  +  +    L ++       Q    ++  S+         + + 
Sbjct: 1164 --LSEQDPYQLAILDMCMPGMDGETLGRVIRADTRLQETRLVMMTSVGQRGQGKRLEEIG 1221

Query: 664  IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR-----------KI 712
                + KPL+   L   L  A+            L +  L H L              +I
Sbjct: 1222 FSGYLSKPLQHLELFDCLSLALAREQHA-----PLITQHLTHELHKSQAAEYFKDSKARI 1276

Query: 713  LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGF 770
            L+ +DN +N +VA   L+++G     V  G +A   L  +P   +D   MD+QMPEMDG 
Sbjct: 1277 LLAEDNIINQQVALGILRKFGLRADAVANGMEALSALSSLP---YDLVLMDVQMPEMDGL 1333

Query: 771  EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            +AT+ IRE E         G V+          H+PI+AMTA  +Q   E CL++GMD Y
Sbjct: 1334 QATQWIRENEAQMA-----GAVA----------HIPIIAMTAHAMQGDRERCLQAGMDDY 1378

Query: 831  VSKPFEAEQLYREVSRFFPPIP 852
            + KP   + L + + ++ P  P
Sbjct: 1379 LQKPVSPDALLQILQKWLPRHP 1400


>gi|406952533|gb|EKD82114.1| hypothetical protein ACD_39C01476G0002 [uncultured bacterium]
          Length = 976

 Score =  286 bits (733), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 198/611 (32%), Positives = 301/611 (49%), Gaps = 93/611 (15%)

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           EL  +AE A+VAKS+FLA +SHEIRTPMNG++GM  +L++T L   Q+ Y    ++S + 
Sbjct: 317 ELAHQAEQANVAKSEFLANMSHEIRTPMNGIIGMSSLLLETTLTAEQKQYADVVRSSCEN 376

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L+SL+N++LD +K+E+GKL LE ++F+LR  L+D   + + K+ +K +ELA  ++   P 
Sbjct: 377 LLSLVNDILDFSKIEAGKLSLEHINFDLRTTLEDAFEMLAIKAHEKKIELACVVAPETPS 436

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 427
            L GDPGR RQII NL+GN+IKFT++G + + V + EE    +                 
Sbjct: 437 LLHGDPGRLRQIILNLVGNAIKFTDQGEVILNVKVDEEHEHDV----------------- 479

Query: 428 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487
                                        ++  +V  +DTG GI  +  SR+FT FMQV 
Sbjct: 480 -----------------------------MLRFVV--KDTGIGIAPDHLSRLFTAFMQVD 508

Query: 488 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 547
            S +R +GGTG+GL+IS+ L   M G IG  S P +GS F FTA F            Q 
Sbjct: 509 GSTTRKYGGTGLGLAISRQLAELMGGNIGVTSEPGVGSEFWFTAKF----------TRQD 558

Query: 548 MNNQPNSVS-SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIAS 603
             N P S+  ++  G++ L+VD   +   +    +   G +    +D    L+ L    +
Sbjct: 559 DENVPESLPMADITGIRILIVDDHAVNRLLVSNLLTSWGCRYSEAADGKAALEMLEIAEA 618

Query: 604 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
                 + L++  +   D       + +  KL     S   +L  S+           V 
Sbjct: 619 EGDPYYVALLDMLMPTMDGRALCEKIKSNPKLA----STRLILLTSLGQRGDAEWIHKVG 674

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLL-----GRKILIVDD 717
               + KPLR S L   L   +G+    +++N  L S +  RH +L       +IL+V+D
Sbjct: 675 FAGYLTKPLRQSQLHDCLSMVVGM---TDVQNVSLTSELITRHRVLEAHRRNVRILLVED 731

Query: 718 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
           N  N +VA   LK+ G        G +A  LL   H +    MD QMPEMDGFEAT+ IR
Sbjct: 732 NITNQEVALITLKKLGYRADLATNGIEALRLL-SEHNYSMVLMDCQMPEMDGFEATENIR 790

Query: 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
                                NV N  VPI+AMTA+ +Q   E C+ +GM+ Y++KP + 
Sbjct: 791 -----------------AGRNNVLNSAVPIIAMTANAMQGDRERCIEAGMNDYIAKPVQP 833

Query: 838 EQLYREVSRFF 848
            +L  +++++ 
Sbjct: 834 AELLGKLNQWL 844


>gi|298527923|ref|ZP_07015327.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298511575|gb|EFI35477.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1346

 Score =  286 bits (733), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 222/725 (30%), Positives = 335/725 (46%), Gaps = 118/725 (16%)

Query: 183  VSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIAS-------------LVGHIF 229
            VS L+  DPFR H      +     PL+     +G + + S             L   + 
Sbjct: 541  VSKLDNNDPFRLHLEFQDIQSLLAIPLMGPEGCLGFVGLDSVRSTRTWSDSEINLFALLA 600

Query: 230  QATVNRIAKV--EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 287
            +  VN   +   E+D    ME   +AE A  AKS+FLA +SHEIRTPMNGV+GM D+L+D
Sbjct: 601  KLLVNAQLRQSREQDLKDAME---QAEIATQAKSEFLANMSHEIRTPMNGVIGMTDLLLD 657

Query: 288  TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 347
            TEL   Q+    + Q+SG+AL++LIN++LD +K+E+G+LELE+V+FNL  +L+D+ SL +
Sbjct: 658  TELRPEQRSLAESIQSSGEALLALINDILDFSKIEAGRLELESVNFNLHYLLEDLASLMA 717

Query: 348  GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 407
             ++ +KG+EL       VP  + GDPGR RQI+TNL+GN+IKFT +G + V V       
Sbjct: 718  VRADEKGLELICLPDPDVPAQVQGDPGRLRQILTNLVGNAIKFTHQGEVVVMVQ------ 771

Query: 408  DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 467
                 ++E  S K+                               +SAD + L+ +V+DT
Sbjct: 772  -----KSEARSQKS------------------------------DNSADDVLLLFTVQDT 796

Query: 468  GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
            G G+P +    +F  F QV  S +R  GGTG+GL+IS+ L   M GE+G  S    G  F
Sbjct: 797  GIGVPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAEMMGGEVGVQSEYGRGCKF 856

Query: 528  TFTAVFGNGSSTSNEHNSQQMNNQP-NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
             FTA              Q+   +P  ++  +  G   L+VD      ++ +  ++  G+
Sbjct: 857  WFTARL----------TLQKKQEEPLPALPQDLHGEHILIVDDNETNLEILKKQLEAWGV 906

Query: 587  QVEVVS---DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 643
            +VE  S   + L  L ++ S      M +++  +   D +     + N   L    +   
Sbjct: 907  EVEQASEGHEALLILDRVYSEGNYFAMAILDMHMPGMDGAELGRLIRNTDIL----KDLP 962

Query: 644  FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG-------NIRNW 696
             ++  S+         +     + + KP+R S L  +L   +    K          +  
Sbjct: 963  LVMLTSLGRPGDAKIFEEQGFNAYLNKPVRQSELFDTLLTVLSSAGKAPGHSIITRHQAR 1022

Query: 697  ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 756
            E+       +     +L+ +DN VN KVA   L + G +   V+ G KA E L     +D
Sbjct: 1023 EIKRQQSELIKFKGHVLVAEDNPVNQKVAVGLLNKMGLSADIVDTGLKAVEALQ-NQSYD 1081

Query: 757  ACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIE--------------------A 796
               MD+QMPEMDG EAT+ IR  E        R ++S E                     
Sbjct: 1082 LVLMDVQMPEMDGLEATRRIRAAEDRNQRSEVRNQISEERNQSTGDRRWESQPLNPSTPE 1141

Query: 797  YENVS-------------NFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
            Y N S             N  +PI+AMTA  +    E CL +GMD YV+KP    QL   
Sbjct: 1142 YHNPSIPKSFNPKIPQSLNPKIPIIAMTAGAMHQDRERCLDAGMDDYVTKPVNPGQLATV 1201

Query: 844  VSRFF 848
            +SR+ 
Sbjct: 1202 LSRWL 1206


>gi|383761012|ref|YP_005439994.1| putative two-component hybrid sensor and regulator [Caldilinea
            aerophila DSM 14535 = NBRC 104270]
 gi|381381280|dbj|BAL98096.1| putative two-component hybrid sensor and regulator [Caldilinea
            aerophila DSM 14535 = NBRC 104270]
          Length = 1606

 Score =  286 bits (731), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 206/622 (33%), Positives = 300/622 (48%), Gaps = 102/622 (16%)

Query: 238  KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
            ++ E  H   +L  +A+AA  AKS+FL+ +SHEIRTP+NGV+GM  +L+DT L   Q+ Y
Sbjct: 1065 ELAEALHRAEQLAVEAQAASRAKSEFLSVMSHEIRTPLNGVIGMTGLLLDTPLTSEQRQY 1124

Query: 298  VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
               A+ SG+ L++LIN++LD +K+E+ KLELE + F+LRA+++D + + +G++Q KG+EL
Sbjct: 1125 AEIARTSGETLLALINDILDFSKIEARKLELERLRFDLRAMVEDAVDILAGRAQAKGLEL 1184

Query: 358  AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
              ++    P  +IGDPGR RQI+ NL GN+IKFTE+G + + V +  E            
Sbjct: 1185 VCFVEPEAPTYVIGDPGRLRQIVLNLAGNAIKFTEQGEVVIRVGVAAE------------ 1232

Query: 418  SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                                +A  + L  +V+DTG GIP +   
Sbjct: 1233 ------------------------------------TATHVTLRFTVKDTGIGIPSDRLH 1256

Query: 478  RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
            R+F PF QV  S +R  GGTG+GL ISK L   M GE+G  S P +GS F FTAV    +
Sbjct: 1257 RLFQPFSQVDSSTTRRFGGTGLGLVISKQLAELMGGEVGVESTPGVGSVFWFTAVVEKCA 1316

Query: 538  STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ--- 594
                         +    S +    + LVVD        +R  +  L  Q     D+   
Sbjct: 1317 DA----------GEAPETSLDLHHARLLVVDDN----DANRLLVHTLVTQWNGRCDEAVN 1362

Query: 595  ----LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
                L  L + A+      + L++ ++ + D        + +R+     Q+ L L+    
Sbjct: 1363 AHHALSMLREAAAQGDPYALALLDMQMPDAD---GLTLASWIREDPVLAQTPLILIT--- 1416

Query: 651  SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL-- 708
            S      +       + I KPLR S L   L  A+G   +        PS +   +    
Sbjct: 1417 SLGYQGAAEQDRLFAAQITKPLRQSQLREQLALALGYRQRSL-----QPSTTAAVVAPPP 1471

Query: 709  GR--KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
            GR  +IL+ +DN VN KVA   LK+ G +   V  G++A   L   + +D   MD +MPE
Sbjct: 1472 GRPLRILLAEDNVVNQKVALTMLKKLGYSADAVANGREALAALSEIN-YDLVLMDCEMPE 1530

Query: 767  MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG 826
            MDGFEAT             IR GE        V N  VPI+AMTA  +Q   E CL  G
Sbjct: 1531 MDGFEATL-----------HIRSGEA------GVLNPSVPIIAMTAHAMQGDRERCLAVG 1573

Query: 827  MDGYVSKPFEAEQLYREVSRFF 848
            M+ YVSKP +   L   + R+ 
Sbjct: 1574 MNDYVSKPVQLSTLSTALERWL 1595


>gi|430748007|ref|YP_007207136.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
           18658]
 gi|430019727|gb|AGA31441.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
           18658]
          Length = 1098

 Score =  286 bits (731), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 197/617 (31%), Positives = 306/617 (49%), Gaps = 104/617 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K  AE A  AKS FLAT+SHEIRTPMN ++GM ++ +DT+L   Q+ Y+   + S ++L+
Sbjct: 430 KDAAEQATQAKSTFLATMSHEIRTPMNAIIGMTELTLDTDLTPEQRQYLELVKESSESLL 489

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           +LIN++LD +K+E+GKL+LE++ F+L   L + +   + ++  K +ELA +I+  VPETL
Sbjct: 490 TLINDILDLSKIEAGKLDLESIDFSLHESLGNTMKALALRAHKKRLELAYHIAPDVPETL 549

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDPGR RQI+ NL+GN+IKFTE G + V             VE E              
Sbjct: 550 VGDPGRLRQIVVNLVGNAIKFTEHGEVVV------------HVEKE-------------- 583

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                 S +AD + L   V DTG GIP E Q  IF  F+Q   S
Sbjct: 584 ----------------------SQTADEVCLHFRVTDTGVGIPRERQDLIFDAFIQADSS 621

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS---TSNEHNSQ 546
            +R +GGTG+GL+IS  L+  M+G +   S    GSTF FT   G   +   T +   S 
Sbjct: 622 TTRQYGGTGLGLTISSRLIALMRGRVWVESEAGQGSTFHFTMRLGVRKAPGITRDSAGST 681

Query: 547 QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI---AS 603
            ++N P            LVVD       +    + +  ++ + V+D    L+++   A+
Sbjct: 682 LVDNLP-----------VLVVDDNATNRLILEEILTKWRMRPKAVADGPSALAEMKRAAA 730

Query: 604 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
                 ++L +  +   D       +  ++      +S L +L+++  S   +     + 
Sbjct: 731 AGDPYALVLADAMMPGMD---GFTLLEQIKAHPELARSTLMMLSSADQSGDVDRCRR-MG 786

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVG----NKGNIRN-------WELPSMSLRHLLLGRKI 712
           + + ++KP++ S L  ++  ++G       +G++ N        +LP+ S      G +I
Sbjct: 787 VNAYLVKPIKRSELLDAIVTSLGTSGVADGRGDLANRVSRLEPGDLPAPS-----RGLRI 841

Query: 713 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEA 772
           L+V+DN VN  +A   L++ G  V+    GK+         +FD   MD+QMPEMDG E 
Sbjct: 842 LLVEDNPVNQTLATILLEKRGHKVIVACNGKEGLA-AWEKQEFDLILMDVQMPEMDGLEV 900

Query: 773 TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832
           T  IR                  A E  +  H+PI+AMTA  I+   E CL++GMDGYVS
Sbjct: 901 TACIR------------------ARERGTGRHIPIVAMTAHAIKGDREHCLQAGMDGYVS 942

Query: 833 KPFEAEQLYREVSRFFP 849
           KP E   L+R ++   P
Sbjct: 943 KPIEVGDLFRAIADVVP 959


>gi|119776084|ref|YP_928824.1| sensory box histidine kinase/response regulator [Shewanella
            amazonensis SB2B]
 gi|119768584|gb|ABM01155.1| sensory box histidine kinase/response regulator [Shewanella
            amazonensis SB2B]
          Length = 1763

 Score =  285 bits (729), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 191/607 (31%), Positives = 308/607 (50%), Gaps = 92/607 (15%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            +M  K+ A+AA+ AKS FLA +SHEIRTPMN ++GM  + + TELD  Q++YV   + + 
Sbjct: 1023 LMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDRKQRNYVEKIERAS 1082

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            K+L+ +IN++LD +K+E+GKL++E V F L  IL+D+  +FS K+ DK +EL   ++  V
Sbjct: 1083 KSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFSVKAADKQLELLFSVAPGV 1142

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  L GDP R  Q++ NLM N+IKFTE+G + +++             +EL+  +     
Sbjct: 1143 PTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSI-------------SELARDE----- 1184

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                          D + L  +V D+G G+  E Q+++F  F Q
Sbjct: 1185 ------------------------------DQVQLKFAVRDSGIGLTAEQQAKLFKSFSQ 1214

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               S +R +GGTG+GL+I K LV  M GEIG  S    GSTF FT       S     N+
Sbjct: 1215 ADTSTTRKYGGTGLGLAICKQLVELMGGEIGVDSQFGNGSTFYFTV------SVKVAQNA 1268

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
            Q       +V  E +GM  LVVD       + R  +Q +G  V+     ++ L + A   
Sbjct: 1269 QL------NVEQELEGMAVLVVDDNSTARDILRTTLQSMGFSVDSARSGMEALEKCA--E 1320

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
            +   + L++ ++ E D + +   +  L+      Q  L L+ ++ ++S      + + I 
Sbjct: 1321 RDYRIALIDWKMPEMDGTETAARMRELK------QPPLILMVSAHANSEFIDKVEEMGIN 1374

Query: 666  SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNVNLK 723
              I KP+ +S L   +  A+G      +R    P M  + L  L G++IL+V+DN +N +
Sbjct: 1375 GYITKPISASRLLDGIMSALGRQGHKPVRRKAQP-MDAQKLSGLKGKRILLVEDNEMNQE 1433

Query: 724  VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
            VA+  L++ G  +   + G+ A E L     FD   MD QMP MDG++AT+ +R++    
Sbjct: 1434 VASEFLEQVGVVLSIADNGQIALEKL-GQQSFDLVLMDCQMPVMDGYQATRELRKLP--- 1489

Query: 784  NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
                                 +P++AMTA+ +    E CL +GM+ +++KP E   LY+ 
Sbjct: 1490 -----------------GLAELPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVGILYQT 1532

Query: 844  VSRFFPP 850
            + ++  P
Sbjct: 1533 LLQYLCP 1539


>gi|86607438|ref|YP_476201.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
 gi|86555980|gb|ABD00938.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
          Length = 1523

 Score =  285 bits (729), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 192/593 (32%), Positives = 297/593 (50%), Gaps = 90/593 (15%)

Query: 261  SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 320
            S FLAT+SHEIRTPMN VLGM  +L++T L+  Q+D+V T + SG AL++LIN++LD +K
Sbjct: 850  SSFLATMSHEIRTPMNAVLGMTGLLLETPLNAEQRDFVETIRVSGDALLTLINDILDFSK 909

Query: 321  VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 380
            +E G++ELE + F+LR+ L++V  LF+  +  KG+ELAV +   VP  L GD  R RQI+
Sbjct: 910  LEVGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLVPPEVPRYLRGDASRLRQIL 969

Query: 381  TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 440
             NL+ N+IKFT +G + +   L++E                                   
Sbjct: 970  NNLVSNAIKFTHQGEVVIQAELMQE----------------------------------- 994

Query: 441  FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 500
                         +A  + L +SV DTG GIP +AQ+++F PF QV  S +R +GGTG+G
Sbjct: 995  -------------TATHVQLRLSVRDTGIGIPKDAQTKLFQPFTQVDASTTRKYGGTGLG 1041

Query: 501  LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 560
            L+I K L   M G I   S    GSTF+             +  ++Q++ QP  +  + Q
Sbjct: 1042 LAICKQLTELMGGRIFLESEEGRGSTFSLELTL------ERQPYARQISQQPARIPVDLQ 1095

Query: 561  GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK---IINMILVEQEV 617
            G + LVVD      K+ RY     G+ VE   +  Q L ++   ++      + +++ ++
Sbjct: 1096 GKRLLVVDDNATNRKIVRYQATAWGMVVEEAENAYQALDKLRQAAREGIPFPLAVLDMQM 1155

Query: 618  WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 677
             E D      ++    +L    Q++L ++  S+     +     +   + + KP++ + L
Sbjct: 1156 PEVDGETLGRWIKADPELS---QTQLVMM-TSLGLGEHSRRAAEIGFAAYLTKPVKQTRL 1211

Query: 678  AASLQRAMGVGN--------KGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 729
              +L  A+G  +         G   +   PS S     L  +IL+ +DN VN KVA   L
Sbjct: 1212 QEALVMALGKSSGLATSLLGMGPPLSQSAPSASRPQQPL--RILLAEDNPVNQKVALRQL 1269

Query: 730  KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789
            +  G     V  G++  +LL    Q+D   MD QMP MDG+EAT+ +R+ E        R
Sbjct: 1270 QSLGYMADVVANGQEVLDLLQRV-QYDLILMDCQMPVMDGYEATRRLRQQE--------R 1320

Query: 790  GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
            G          S     ++A+TA+ +Q   E CL++GMD Y+SKP   E L R
Sbjct: 1321 G----------SGHRTVVIAITANAMQEDRERCLQAGMDDYLSKPVLKEDLER 1363


>gi|224371381|ref|YP_002605545.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223694098|gb|ACN17381.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 967

 Score =  285 bits (728), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 191/608 (31%), Positives = 314/608 (51%), Gaps = 89/608 (14%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K+ AE A  AKSQFLA +SHEIRTPMNGVLGM ++LM+T+L   Q+ + +T Q+SG +L+
Sbjct: 295 KETAEEASRAKSQFLANMSHEIRTPMNGVLGMAELLMETDLTEEQRRFSKTIQSSGSSLL 354

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+E+GKLELE ++FNL+ ++DDV+ + + ++  K +ELAV I    PET 
Sbjct: 355 AIINDILDFSKIEAGKLELETINFNLQILIDDVMQMLASRAHAKQLELAVLIP---PETC 411

Query: 370 I---GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGY 426
           I   GDP RFRQ++TNL+GN+IKFT++G + V V                          
Sbjct: 412 IFLRGDPTRFRQVLTNLVGNAIKFTKQGEVVVQV------------------------AT 447

Query: 427 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 486
            V+D+                        + + L V + DTG GI  +   R+F+PF Q 
Sbjct: 448 TVSDQ------------------------NRVKLHVLIRDTGIGISQQDLQRLFSPFSQA 483

Query: 487 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 546
             S +R +GGTG+GL+ISK +V  M G++   S P  GSTF+FT  F   +S   E N  
Sbjct: 484 DGSTTRKYGGTGLGLAISKEIVALMGGDLHCESEPGKGSTFSFTVDF--AASLETEKNRS 541

Query: 547 QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSDQLQCLSQIAS 603
           ++N      ++  +G + LV+D      ++ +      G++    +  +  ++ L     
Sbjct: 542 RLN------TANLKGHRVLVIDDNLTNREILKRQTSSWGMKPKSSDCGAKGIEELHLAQQ 595

Query: 604 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
             +  +++L+++++      +  L V    K          ++  S+ +           
Sbjct: 596 KGEPFDLVLLDKDM----PGMDGLEVAQQIKADSAIADTRLIMLTSVGAGNDAAQAKRNG 651

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH--LLLGRKILIVDDNNVN 721
           I + + KP+  + L A++ + +G   K N  +  + S  +     L    +L+ +DN  N
Sbjct: 652 ISAYLNKPVPQADLHAAVIQIIGDHPK-NRSDHMIDSTGIDQDKQLFNIHVLVAEDNLTN 710

Query: 722 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
             VAAA L+ +G  V  V  G++A + +     +D  FMD QMP +DG++AT  IR+ E 
Sbjct: 711 QNVAAAMLRLFGCRVDIVSNGREAVDAI-SKKSYDLVFMDCQMPVLDGYQATAAIRQFEK 769

Query: 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
                           EN    ++PI+A+TA+ ++   ++CL +GMD Y+SKPF   Q+ 
Sbjct: 770 ----------------ENGVEKNMPIIALTANALEGDRKKCLTAGMDDYLSKPFLKSQIL 813

Query: 842 REVSRFFP 849
             +  + P
Sbjct: 814 SILKSWSP 821


>gi|407000332|gb|EKE17662.1| hypothetical protein ACD_10C00329G0001 [uncultured bacterium]
          Length = 847

 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 195/622 (31%), Positives = 311/622 (50%), Gaps = 96/622 (15%)

Query: 236 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 295
           I+ V+     ++  K+ AEAA+ A+  FLA +SHEIRTPMNG++GM ++ +DTELD  Q+
Sbjct: 172 ISDVKAAEAALILAKEAAEAANQARGAFLANMSHEIRTPMNGIIGMTELTLDTELDAEQR 231

Query: 296 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 355
            Y++T ++S ++L+ ++N++LD +K+E+GK+  E ++F+L   L +   + +  +  KGV
Sbjct: 232 HYLKTVKSSAESLLVIVNDILDFSKIEAGKIRFETLAFSLHDTLLEAARVLAVSAHKKGV 291

Query: 356 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415
           EL V +S  VP   +GDP R RQ+I NL+GN+IKFTE+G + + V L     D I     
Sbjct: 292 ELIVEMSPDVPLRALGDPTRLRQVIINLIGNAIKFTERGEVTLLVTL-----DQI----- 341

Query: 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 475
                                       DGS           + +  SV DTG G+PL+ 
Sbjct: 342 ---------------------------TDGS-----------VFIKFSVRDTGIGVPLDK 363

Query: 476 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535
           Q  IF  F Q   S +R  GGTG+GL+IS  LV  M G I   S P +GS F+F A FG 
Sbjct: 364 QQAIFEAFSQADVSTTRRFGGTGLGLAISSRLVQLMDGRIWLDSTPGVGSVFSFVARFGT 423

Query: 536 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 595
              T          + P    +++QG +AL+++      +     ++RLG+QV +V    
Sbjct: 424 VLET----------HPPALPEAKYQGRRALIIEDNAAAGRCLLQMLERLGLQVSLVGSAE 473

Query: 596 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF-----------QSKLF 644
             L+ +     +             D     +F +       GF           + +L 
Sbjct: 474 AGLAAVERSRAV-------------DFPYDYIFADANMASPAGFSLAESWRDTTRRERLL 520

Query: 645 LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR 704
           ++  + +     T    + + + ++KP+ +  LA +L  A GV  +  + +++L S    
Sbjct: 521 MMLTTENQRHDLTRLREMEVSAHLVKPIGAGDLADALGLAEGVTAELELASFDLGSAEPA 580

Query: 705 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 764
              L  KIL+ +DN VN ++A   L+R+   VV    G +A E     H FD   MD+QM
Sbjct: 581 DKAL--KILLAEDNPVNQELARRLLERHSHRVVVANNGAEAVEQFDNGH-FDIILMDMQM 637

Query: 765 PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 824
           P M G EAT++IR  E      +RR  V    +  V      I+AMTA+V+ +  + C+ 
Sbjct: 638 PVMGGVEATEVIRSRE------MRRSWVISHEFRPVY-----IIAMTANVMASDRDRCME 686

Query: 825 SGMDGYVSKPFEAEQLYREVSR 846
           +GM+ YV+KP  +E+L+  ++R
Sbjct: 687 AGMNDYVAKPLRSEELFAALAR 708


>gi|196228199|ref|ZP_03127066.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196227602|gb|EDY22105.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 1248

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 192/628 (30%), Positives = 303/628 (48%), Gaps = 91/628 (14%)

Query: 229  FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT 288
            ++ TV  I    E    + + +  A  +   KS+FLA +SHEIRTPMNG++GM  +L+DT
Sbjct: 569  YEGTVEDITARRETDDAIKKARDAALESARLKSEFLANMSHEIRTPMNGIIGMTGLLLDT 628

Query: 289  ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 348
            EL   Q+D+ +T  +S  AL+++IN++LD +K+E+G L  E + F L  +++  + L + 
Sbjct: 629  ELSPKQRDFTQTISSSADALLTIINDILDFSKIEAGMLAFEEIDFQLGTVVEGSVELLAA 688

Query: 349  KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 408
            ++  + +ELA  +   VP  L GDPGR RQ++TNL+GN++KFT+KG + V     E    
Sbjct: 689  RAASREIELASLVYHDVPTNLRGDPGRLRQVLTNLIGNAVKFTDKGEVVVRANCQE---- 744

Query: 409  SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 468
                                             N +  T+           +  SV DTG
Sbjct: 745  ---------------------------------NAETHTT-----------IRFSVTDTG 760

Query: 469  QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 528
             GI  EAQ R+F PF+Q   S +R  GGTG+GL+I K LV RM GEIG  S    GSTF 
Sbjct: 761  IGISSEAQERLFQPFVQADGSTTRRFGGTGLGLAICKQLVARMGGEIGVTSEAGKGSTFW 820

Query: 529  FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 588
            FTA F            Q          ++ + ++ + VD       +  + +   G++ 
Sbjct: 821  FTARF----------EKQAGGGMAAPRPAKLKDVRVITVDDNDTNRAILHHLLSNWGMRE 870

Query: 589  EVVSDQLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 645
            +  +   Q LS +   A   ++ ++ +++ ++ E D     L +    K    F S   +
Sbjct: 871  QQAASGKQALSILQAEAGRGRMFDLAILDMQMPEMD----GLELARAMKKDPRFASARIV 926

Query: 646  LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG------NKGNIRNWELP 699
            +  S+       +     + + + KP++ S L   L   M           G +   E P
Sbjct: 927  MLTSVDRQEDPEALRETGVDAYLTKPVKQSQLYDCLSLVMSQDVETREIKSGLVALSEQP 986

Query: 700  SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 759
            +      +   +ILI +DN VN KVA   L++ G     VE G++A + L    ++D  F
Sbjct: 987  ASLPSEPIEKLRILIAEDNPVNQKVALYQLQKLGYMADVVENGRRALDAL-ARSRYDIVF 1045

Query: 760  MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
            MD QMPE+DG+EAT+ +R +E         G+V           H  ++AMTA+ ++   
Sbjct: 1046 MDCQMPELDGYEATRDLRAIE---------GDVR----------HTWVIAMTANSLEGDR 1086

Query: 820  EECLRSGMDGYVSKPFEAEQLYREVSRF 847
            E+CL +GMD YVSKP + E L+  + RF
Sbjct: 1087 EKCLNAGMDDYVSKPVKPEVLHAAIRRF 1114


>gi|149177515|ref|ZP_01856118.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
 gi|148843665|gb|EDL58025.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
          Length = 1129

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 192/597 (32%), Positives = 297/597 (49%), Gaps = 81/597 (13%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K +AE A  A+ +FLA VSHE+RTPMN +LGML++ +   L   ++DY++TA+ S  +L+
Sbjct: 445 KDEAEQATRAQGEFLANVSHELRTPMNAILGMLELTLQENLTPLKRDYLQTAKDSADSLL 504

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            L+N++LD +++E+G  ELE V F+LR ++D+ +   S ++ +KG+EL   I  RVP  +
Sbjct: 505 LLVNDILDFSRLEAGHFELEPVPFSLRVMIDEAVKTLSLRACEKGLELICRIDKRVPSQV 564

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R RQI+TNL GN+IKFTE+G + V V L+E   +                  P+ 
Sbjct: 565 LGDPVRLRQILTNLAGNAIKFTEQGEVVVDVKLIEPAGE-----------------IPLP 607

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                 K    F                     SV DTG GI +E Q RIF PF Q   S
Sbjct: 608 RLQPGEKALLEF---------------------SVSDTGIGIAVEDQKRIFAPFAQADAS 646

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R + GTG+GL+I   L+G M GE+   S P  GS F+F  +         E       
Sbjct: 647 TTRHYSGTGLGLAICHELIGLMDGEMYLTSEPGEGSCFSFQVIL-----PVAEPEESVQG 701

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSDQLQCLSQIASGSK 606
           N+  SV SE + +  LVVD       +    +    +    V+   + L  LS ++   K
Sbjct: 702 NEKASV-SELRDLPVLVVDDNQTNRVILEEMLTNWSMSPTPVDSAREALDQLSALSEKEK 760

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
              +++V+  + E D     + +   R+ G    S   L+ +S      +    G+ I +
Sbjct: 761 SYPLVIVDALMPETD---GFMLLEQAREEGL-LDSATILMLSSADHQIFSERCQGLDISA 816

Query: 667 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR---KILIVDDNNVNLK 723
            + KP+  S L  ++  A+    KG     +L S S+  +   +   ++L+ +D   N K
Sbjct: 817 FLEKPVSQSDLLDAIMTAL----KGP----QLESSSVSQIRESKQTLRVLVAEDTPANQK 868

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           V  A LK+ G   V  + G++A + L     FD   MD+QMP MDG +AT +IRE E+  
Sbjct: 869 VINAILKKRGHQCVIADNGREAVDCLR-NESFDVVLMDVQMPTMDGLQATAMIRENEYG- 926

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                            S  H PI+AMTA  ++   ++C+ +GMD Y+SKP +A++L
Sbjct: 927 -----------------SGVHTPIIAMTAYAMRGDRDKCIAAGMDSYISKPIDAKKL 966


>gi|409994119|ref|ZP_11277239.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
            Paraca]
 gi|291570461|dbj|BAI92733.1| two-component hybrid sensor and regulator [Arthrospira platensis
            NIES-39]
 gi|409935032|gb|EKN76576.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
            Paraca]
          Length = 1351

 Score =  283 bits (724), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 221/713 (30%), Positives = 337/713 (47%), Gaps = 134/713 (18%)

Query: 167  PISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVG 226
            PI +YG        W  + LN  +PFR  +     K  A W        IG         
Sbjct: 605  PIKVYGQVYGTLCFWSQNPLN--EPFRAVDQEL-LKLMAQW--------IG--------- 644

Query: 227  HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM 286
                + + R    +E    + E + +A AA  AKS+FLAT+SHEIRTPMN V+GM  +L+
Sbjct: 645  ----SEIERQQTAQE----LSEARDEALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLL 696

Query: 287  DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 346
            DT L + QQD+V T ++S  AL+SLIN++LD +K+ESGKL+LEA  F+LR  L++ L L 
Sbjct: 697  DTPLSLVQQDFVETIRSSSDALLSLINDILDFSKIESGKLDLEAFPFSLRTCLEESLDLL 756

Query: 347  SGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 406
            + K+  K +EL  +I    P  ++GD  R RQI+ NL+ N++KFT +G + V+V      
Sbjct: 757  ATKAASKSLELGYFIDAYTPNEVVGDMARVRQILVNLLSNAVKFTARGEVLVSV------ 810

Query: 407  VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 466
                       S+K   S   +                      KS  +    + V+V D
Sbjct: 811  -----------SAKPLFSDLELTA--------------------KSMYSTHYQIEVAVSD 839

Query: 467  TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS------- 519
            TG GIP++  +R+F  F QV  S +R +GGTG+GL+IS+ L   M G++  VS       
Sbjct: 840  TGIGIPVDRMNRLFKSFSQVDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGDAIGGH 899

Query: 520  ----------IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 569
                       P  GSTF F+ V           +SQ +  Q N  + E  G + L++D 
Sbjct: 900  PPENWQINKDTPTQGSTFYFSIVV---------QSSQNLLPQWNH-ADELAGKRLLIIDS 949

Query: 570  RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFV 629
             P   ++    +Q  G+ VE      + ++ +  G K  ++ +VE E+   D      F 
Sbjct: 950  HPTNRQILTKQVQCWGLVVEDTDSPTEAIAWLKQG-KTFDIAIVEMEIANLD---GFNFA 1005

Query: 630  NNLRKLGCGFQSKLFLLANSISSSRAN-TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 688
              +R+   G    L +L   IS  + N   TD     + + KP++ S L   L   +  G
Sbjct: 1006 TQVRQTSAGVDLPLVML---ISVGQQNFNPTDHRDFVAFLNKPIKQSPLYNILINVL-CG 1061

Query: 689  NKGNIRNW---------ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCV 739
                I+NW         ++P ++ +   L  +IL+ +D+ VN KVA   L+R G      
Sbjct: 1062 EPLQIKNWSRNQMRSPQDIPLLAEK---LPLRILLAEDHLVNQKVALQILQRMGYRADVA 1118

Query: 740  ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYEN 799
              G +  E L     +D   MD+QMP MDG EA + I+                 + Y++
Sbjct: 1119 GNGLEVLEAL-ERQPYDVILMDMQMPIMDGLEAARQIK-----------------KRYDS 1160

Query: 800  VSNFHVP---ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
              N + P   I+A+TA+ +++   EC+ +GMD Y+SKP   EQL + +S   P
Sbjct: 1161 NDNPYSPRPRIIAVTANAMESDRAECIAAGMDDYISKPIRMEQLVKVLSNCRP 1213


>gi|404492663|ref|YP_006716769.1| sensor histidine kinase response regulator, Hpt domain-containing
           [Pelobacter carbinolicus DSM 2380]
 gi|77544744|gb|ABA88306.1| sensor histidine kinase response regulator, Hpt domain-containing
           [Pelobacter carbinolicus DSM 2380]
          Length = 1014

 Score =  283 bits (724), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 190/618 (30%), Positives = 301/618 (48%), Gaps = 95/618 (15%)

Query: 238 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +++     + + ++ AE A  AKSQFL  +SHEIRTPMNGV+GM ++L+D+ L   Q+  
Sbjct: 337 QLQSSIQELQQARQHAEEASRAKSQFLVNMSHEIRTPMNGVIGMTELLLDSPLAEEQRQI 396

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
             T   SG+AL+ +IN++LD +K+E+GKL+LE + F++  I+++   LF+ K+Q KG+EL
Sbjct: 397 ADTVAESGRALLQIINDILDFSKLEAGKLQLENIPFDICGIVEEAAGLFAAKAQTKGLEL 456

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            V ++D VP  L+GDPGR RQ++ NL+ N++KFT++G++ VT+                 
Sbjct: 457 VVDMADDVPPLLLGDPGRLRQVLVNLLSNALKFTKQGYVLVTL----------------- 499

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                        R H                    SA    ++VS+ D+G GI  +   
Sbjct: 500 -------------RAHH---------------ITEQSA---TIVVSIRDSGIGIEPQHIP 528

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F PF Q   S +R +GGTG+GLSI + L+G M G+I   S P  GS F F        
Sbjct: 529 QLFRPFSQADGSTTRKYGGTGLGLSICQDLIGHMGGQIHVFSQPGQGSNFWFEMTMTKDP 588

Query: 538 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
           +    H          +   E + M+AL+VDP P+  +  +  ++  GI+ +      + 
Sbjct: 589 ACGMHH---------VACIPELKNMQALIVDPHPLTRRSVQQQLREWGIKAKTADHGKKA 639

Query: 598 LSQI-ASGSKIINMILV-----EQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS 651
           L+ + A   +II + L       +E+ +    V+     ++  LG        L    + 
Sbjct: 640 LAMLQAQNFQIILVALTLPDMPGRELIQHCCDVAQTVPKHIITLG--------LTGQKLP 691

Query: 652 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK 711
             R    +D  ++ S + KP+R S L   L  A  + +    +       S        +
Sbjct: 692 PCRI---SDATTV-SYLTKPIRPSKLLLHLTNAPPLEDNVQSQTPCPNPASETSTPTKAR 747

Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFMDIQMPEMDGF 770
           +L+V+DN VN +VA   L++ G  V     G++A T     P  FD  FMD QMP MDG+
Sbjct: 748 VLLVEDNPVNQQVAKGMLEKLGCNVTLAADGQEALTAYSHSP--FDLLFMDCQMPNMDGY 805

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
           EAT+ IR  E   +                     PI+AMTA  +    E CL++GMD Y
Sbjct: 806 EATRAIRADEKQHHKTT-----------------CPIIAMTAHTLPGDRERCLKAGMDDY 848

Query: 831 VSKPFEAEQLYREVSRFF 848
           + KPF   Q+   ++R+ 
Sbjct: 849 LGKPFTMRQVRTLLNRWL 866


>gi|182414033|ref|YP_001819099.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177841247|gb|ACB75499.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 812

 Score =  283 bits (724), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 200/601 (33%), Positives = 297/601 (49%), Gaps = 93/601 (15%)

Query: 260 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
           KS+FLA +SHEIRTPMNGV+GM  +L+DT+LD  Q+ +  + + S + L+++IN++LD +
Sbjct: 283 KSEFLANMSHEIRTPMNGVIGMTGLLLDTKLDPEQRQFAESVRNSAENLMTVINDILDFS 342

Query: 320 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
           K+E+GKL  E + F+L   ++  L + + ++Q KG+EL   I+ +VP  L GDPGR RQI
Sbjct: 343 KIEAGKLLFEELDFDLVETIEGTLDMLAERAQGKGIELIDGIAPQVPRYLRGDPGRLRQI 402

Query: 380 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
           +TNL+GN+IKFTE G          EVV S  +E E ++              H+   F 
Sbjct: 403 LTNLLGNAIKFTEHG----------EVVLSTTLERETAT--------------HAIVRF- 437

Query: 440 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
                                   V DTG GI  + Q+R+F  F Q   S +R +GGTG+
Sbjct: 438 -----------------------DVTDTGIGISRDVQARLFQSFEQADSSTTRRYGGTGL 474

Query: 500 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPN---SVS 556
           GL+ISK LV  M GEIG  S   +GSTF FT  F            Q+    P     V 
Sbjct: 475 GLAISKQLVAMMHGEIGVQSEAGVGSTFWFTVEF------------QKQTGAPKRVRRVQ 522

Query: 557 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSKIINMILV 613
            +   ++ LVVD      K+ R+ I    +Q    +   + L+ +   A+  +  ++ L+
Sbjct: 523 RDLTSLRVLVVDDNATNRKILRHQIFAWNMQKGSAAGGHEALRLMRDAAAAGEPYDIALL 582

Query: 614 EQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLR 673
           + ++ E D     L +    K          ++  S+             I + ++KP++
Sbjct: 583 DMQMPEMD----GLTLARAIKDDPALAPTHLIILTSLGHRLTRDELQAAGIDAYLVKPVK 638

Query: 674 SSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL-------LLGRKILIVDDNNVNLKVAA 726
            S L  +L  A+GV      R++E P+ S  +        +L  + L+ +DN VN  VAA
Sbjct: 639 QSRLFDTLMDAIGVAQVFT-RSYETPARSKPNAADTPEPPIL--RALVAEDNQVNQTVAA 695

Query: 727 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
           A LK+   +V  V  G +  E L     +D  FMD QMPEMDG+EAT+ IR+ E    +R
Sbjct: 696 AQLKKLRCSVDVVANGLEVLEALSRA-PYDVIFMDCQMPEMDGYEATRAIRQREQ---DR 751

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
           I        AY         I+AMTA  +    E+CL  GMD YVSKP    +L   + R
Sbjct: 752 IHPCHWKAPAY---------IIAMTAHAMHGDREKCLAVGMDDYVSKPMRTAELQAAIER 802

Query: 847 F 847
           +
Sbjct: 803 W 803


>gi|359413616|ref|ZP_09206081.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
 gi|357172500|gb|EHJ00675.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
          Length = 940

 Score =  283 bits (724), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 187/628 (29%), Positives = 312/628 (49%), Gaps = 112/628 (17%)

Query: 231 ATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL 290
            T N I +  +    + + K++AEAA++AKSQF+A +SHEIRTPMNG+ G L++L  T+L
Sbjct: 293 CTANDITEQRKAETELYKAKEQAEAANIAKSQFIANMSHEIRTPMNGIFGFLELLQSTDL 352

Query: 291 DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKS 350
              Q++++R A+++   L+ ++N++LD +K+E+ KL +E + FNLR  ++D +SL + K+
Sbjct: 353 STEQREFIREAKSASDILLDIVNDILDFSKIEAKKLTMENIKFNLRTTIEDAVSLIAPKA 412

Query: 351 QDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 410
             KG+EL   I   VPE +IGDP R RQI+ NL+ N++KFT +G I V+V  +EE     
Sbjct: 413 ATKGIELYAMIKSGVPEEVIGDPSRLRQILNNLISNAVKFTTEGEISVSVSYLEE----- 467

Query: 411 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
             E E++                                       L+N    V+DTG G
Sbjct: 468 --ENEMA---------------------------------------LLNF--EVKDTGIG 484

Query: 471 IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
           I  E  ++IF  F Q   S +R +GGTG+GL+I   LV  M GEI   S+   GSTF F 
Sbjct: 485 IRKEDINKIFKSFSQADASTTRKYGGTGLGLAICNELVKMMGGEIWAQSVFGEGSTFKFN 544

Query: 531 AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI---Q 587
                    +   N Q+ + +      +F+ +  L+VD       +   H+++ G+   Q
Sbjct: 545 VRL----KIAKRANKQKFDFE------KFKNINVLIVDDNENNRNIFSSHLEKTGLNIFQ 594

Query: 588 VEVVSDQLQCLSQIASGSKIINMILVEQEV-----WEKDTSVSTL-FVNNLRKLGCGFQS 641
            E  +  +  +   A+    IN+ L++ ++     +E  T++ T+ F  +++        
Sbjct: 595 AEGATSAITAIISKANTENKINIALIDYQMPGMNGYELATTLRTMPFAKDIQ-------- 646

Query: 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN-------KGNIR 694
              +L  S++      S       +++ KP++   L + + + +G+ N       K NI+
Sbjct: 647 --LILLTSVTQKVDIKSIKEYGFSTLLAKPVKKDDLLSCIAKTLGLENEEEQAIIKHNIK 704

Query: 695 NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
           N+        +  L  KIL+V+DN VN K+    LK           G  A + +     
Sbjct: 705 NF--------NNALNPKILLVEDNEVNRKIVIRMLKSRNMTCDVAINGSDALDAV-SKKD 755

Query: 755 FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
           +D  FMD QMP MDG+E+T  IR +E +                     H  I+AMTA+ 
Sbjct: 756 YDVVFMDCQMPVMDGYESTARIRHLEGD-------------------KKHTTIIAMTANA 796

Query: 815 IQATYEECLRSGMDGYVSKPFEAEQLYR 842
           +    E+C+++GMD Y+SKP + +++++
Sbjct: 797 MAGDCEKCIKAGMDAYISKPIDFDKMFK 824


>gi|224371576|ref|YP_002605740.1| BarA [Desulfobacterium autotrophicum HRM2]
 gi|223694293|gb|ACN17576.1| BarA [Desulfobacterium autotrophicum HRM2]
          Length = 941

 Score =  283 bits (723), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 200/666 (30%), Positives = 334/666 (50%), Gaps = 93/666 (13%)

Query: 193 RKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKK 252
           + + +R + K K  + LLA   +  +  I     H+ +   NR A+++      + L  +
Sbjct: 207 KNYRLRVKHKSKDEFGLLAEGFNNMLGQIQQRDEHLEEQVRNRTAELQLTMDKAIVLADE 266

Query: 253 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
           A+AA  AKSQFLA +SHEIRTPMNGVLGM +M +D  L + QQ+ + T ++SG++L+++I
Sbjct: 267 AQAASKAKSQFLANMSHEIRTPMNGVLGMAEMALDMNLTLEQQNAIETIKSSGESLLTII 326

Query: 313 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
           N++LD +K+E+GKLE+E ++FNL A+++++  + + ++  KG+EL V I++ +   +  D
Sbjct: 327 NDILDFSKIEAGKLEIETINFNLPALIEEIAQILAHRAHAKGLELIVDIAETLHPDMSSD 386

Query: 373 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 432
           P R RQ++TNL+ N+IKFTE+G +++ V  ++++ DS +V                    
Sbjct: 387 PSRIRQVLTNLLSNAIKFTEQGEVYLKVESLKDMGDSEQVR------------------- 427

Query: 433 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492
                                          V DTG G+  E + ++F PF Q   S +R
Sbjct: 428 -----------------------------FLVRDTGIGMTAEERKKLFQPFSQADESTTR 458

Query: 493 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 552
            +GGTG+GL+IS+ LV  M G+I     P  G+ F F       + T      + +   P
Sbjct: 459 KYGGTGLGLAISRQLVELMDGQINCTGNPGEGAEFWFDLTLKKTAGT------RILAQTP 512

Query: 553 NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS---QIASGSKIIN 609
              + E +G+ ALVVD      ++  + +   GI+ E   D L+ L+   +     +  +
Sbjct: 513 ---TQELKGLSALVVDDNQTNRELLTHQMNSWGIKQEGAEDGLKGLTILHRAVEEKRPFD 569

Query: 610 MILVEQEVWEKD-TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD-GVSIPSV 667
           M+L++  +   D   V+ L    +RK     ++K+ +L +      A  + + G++I   
Sbjct: 570 MVLLDMHMPHMDGLDVARL----IRKDPTLERTKIIILTSVGIRGDAQLAREAGINI--Y 623

Query: 668 IMKPLRSSMLAASLQRAMGVGN----KGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 723
           + KP+R   L  SL   M  GN    K  I  + L            ++L+ +DN +N +
Sbjct: 624 LTKPVRQVDLYNSLVELMN-GNYLEKKDLITQYHLKK---ELTTFNARVLLAEDNIINQQ 679

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           VA   L + G  V     G +A         +D  FMD QMP MDG+EAT  IR ME   
Sbjct: 680 VAKGVLCKLGCRVELATNGLEAVS-AAQKESYDIVFMDCQMPRMDGYEATGKIRWMED-- 736

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
              ++ G+             +PI+A+TA+ +    E+CL +GMD Y+SKPF  E++ + 
Sbjct: 737 ---LKSGQK-----------RLPIIALTANALSGDREKCLAAGMDDYISKPFGKEKIIKV 782

Query: 844 VSRFFP 849
           +  + P
Sbjct: 783 LKHWLP 788


>gi|428218417|ref|YP_007102882.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
 gi|427990199|gb|AFY70454.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
          Length = 1669

 Score =  283 bits (723), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 238/773 (30%), Positives = 360/773 (46%), Gaps = 117/773 (15%)

Query: 141  VEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDP----FRKHE 196
            V++LL Q   +  +  NVY   NLS P+       +   +  V T   G P    F    
Sbjct: 935  VQQLLSQ--DEAIVASNVYQDQNLS-PVLELAHRFNVKSILAVRTSYQGQPNGAIFLHQC 991

Query: 197  MRCR-FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEA 255
             R R + Q+    L A+S  +GI +  +    + +    +  ++ E    + + K+ AEA
Sbjct: 992  NRFRKWTQEEIELLEAVSAQVGIALAQA---QLLERATQQSYELGEKNTALQQAKQDAEA 1048

Query: 256  ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEV 315
            A+ AKS+FLA +SHEIRTPMNGV+GM  +L+DT L   Q++YV   ++SG++L+++IN++
Sbjct: 1049 ANRAKSEFLAMMSHEIRTPMNGVIGMTGLLLDTPLSKVQREYVEIVRSSGESLLTIINDI 1108

Query: 316  LDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGR 375
            LD +K+ESGKLELE   F+L   L   + L   K+ +KG+ L   I   VP+ + GD  R
Sbjct: 1109 LDFSKIESGKLELEEQPFDLLDCLAGSIDLLGPKAVEKGLVLNYLIEPDVPQQITGDVTR 1168

Query: 376  FRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE----TELSSSKNTLSGYPVADR 431
             RQI+ NL+ N IKFTE G + VTV L   +  S  ++    ++L S  +    +  A+ 
Sbjct: 1169 LRQILVNLIANGIKFTEAGEVSVTVSLSSAMDSSSSLDGRSLSQLDSETDETDEFNPANE 1228

Query: 432  CHSW-KGFKTFNQDGSTSPFKSSSADLINLIVSVE------------------DTGQGIP 472
               W +G K+   D S     S   + +  I +VE                  DTG GIP
Sbjct: 1229 ---WGQGAKSGESDQSGELASSDGGNNLEAIAAVEPEHNQSLAHSHTIQFAVRDTGIGIP 1285

Query: 473  LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF--- 529
             E   R+F  F QV  SI+R +GGTG+GL ISK L   M G +   S  + GS F F   
Sbjct: 1286 PEKMERLFKAFSQVDASITRQYGGTGLGLVISKRLCELMGGTMRVESELDRGSIFYFTLS 1345

Query: 530  -TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 588
             TA+    +STS  +  +Q+N           G+KAL+V  R     +   + Q  GI+ 
Sbjct: 1346 TTAIASESTSTSINYVQKQLN-----------GLKALIVADREDNRAILSTYTQAWGIET 1394

Query: 589  EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL----- 643
            +  S   + LS ++       +IL  Q           + V +  KL    QS +     
Sbjct: 1395 KTTSSGAEALSMLSDRQNFDLVILDLQ-----------MPVADELKLAQSMQSTVPGKPI 1443

Query: 644  -FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE----- 697
              +L  S+  S            +++ KPL  S L  ++ R +   N  N++ W+     
Sbjct: 1444 PLILLTSVGVSTKQLQQASNHRIAILAKPLSQSKLHQAIVRIIPDQNIDNVKPWQRRQEV 1503

Query: 698  -----------------------LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGA 734
                                   L +++     +  KIL+ +DN VN KVA   L++ G 
Sbjct: 1504 TTSTNRAAHDRPNPTTFRSSSNRLENVANLSNQIPIKILLAEDNAVNQKVAIRMLEKMGY 1563

Query: 735  AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSI 794
                V  G +A E L     +D   MD+QMPEMDG EAT+ IR+                
Sbjct: 1564 RADLVGNGLEAIEALQ-RQTYDLVLMDVQMPEMDGMEATRQIRD---------------- 1606

Query: 795  EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                  ++ H  I+AMTA+ +Q   E CL +GM+ YVSKP   ++L   + R+
Sbjct: 1607 ---RTKADTHPWIVAMTANAMQGDRENCLAAGMNDYVSKPVSVDELVAAIERY 1656


>gi|383789600|ref|YP_005474174.1| signal transduction histidine kinase [Spirochaeta africana DSM 8902]
 gi|383106134|gb|AFG36467.1| signal transduction histidine kinase [Spirochaeta africana DSM 8902]
          Length = 1509

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 206/607 (33%), Positives = 307/607 (50%), Gaps = 103/607 (16%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
             ++ ++A+ AKSQFLA +SHEIRTPMNGV+GM  +L+DT+L+  Q+ Y    + SG+AL+
Sbjct: 853  NRQVQSANAAKSQFLANMSHEIRTPMNGVIGMTGLLLDTDLNPEQRRYAEAVRTSGEALL 912

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +LIN+VLD +K+E+GKLELE + FNL  I+D+V  + + ++ +K +EL + I  + P  L
Sbjct: 913  TLINDVLDFSKIEAGKLELEQLDFNLLNIVDEVCEMLAIRAHEKNLELILQIDPQTPWML 972

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GDP RFRQI+ NL+ N+IKFT +G + + +                             
Sbjct: 973  HGDPTRFRQILVNLVSNAIKFTHEGEVTLRI----------------------------- 1003

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                              +P  S S   I L   V+DTG GIP E    +F+PF Q+  S
Sbjct: 1004 ------------------TPVASDSG--IMLRCEVQDTGIGIPEERLGNLFSPFTQLDGS 1043

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +RT+GG+G+GLSISK LV  + G+IG  S P +GSTF FTA                  
Sbjct: 1044 TTRTYGGSGLGLSISKQLVRMLGGKIGVRSTPGVGSTFWFTAA-----------FHAAAT 1092

Query: 550  NQPNSVSSEFQGMKALVVDP--RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA--SGS 605
            +QP    +   G+  L++DP  R  RA V +  ++  G+     +D LQ L +I     S
Sbjct: 1093 SQPQLDPAPLAGIHILIIDPNTRVRRALVGQ--LEHWGVICTEAADVLQALQRIRRDHDS 1150

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNN-LRKLGCGFQSKLFLLANSISSSR-ANTSTDGVS 663
             II  I++         +   LF  N LR+L         +  + I  SR +  + D   
Sbjct: 1151 DIIYRIIL---------AAQGLFSRNLLRQLHSAEPDARLVALSRIGRSRDSEHAVDIDP 1201

Query: 664  IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KILIVDDNNVN 721
             P  + KP+R   L ++L+ AM        +    P++  +    G+  ++L+ +D  +N
Sbjct: 1202 PPHRLDKPIRIRQLYSALRSAMEPDFDAPRQPTATPAVRTQR---GKPVRVLVAEDAPIN 1258

Query: 722  LKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
              VA A L++ G     V  G +  T L   P  +D   MD QMP MDG+EAT+ IR   
Sbjct: 1259 QDVALAMLEKLGCRADAVANGAEVLTALETIP--YDLVLMDCQMPVMDGYEATRRIRS-- 1314

Query: 781  HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
               +NR             V N  VPI+AMTA  +    E+CL  GMD YV KP +A+++
Sbjct: 1315 ---SNR-------------VLNPGVPIIAMTAYALAGDREKCLACGMDDYVPKPIDAQEI 1358

Query: 841  YREVSRF 847
             R ++ +
Sbjct: 1359 ARIINSY 1365


>gi|376002915|ref|ZP_09780735.1| putative two-component sensor and regulator, histidine kinase
            [Arthrospira sp. PCC 8005]
 gi|375328680|emb|CCE16488.1| putative two-component sensor and regulator, histidine kinase
            [Arthrospira sp. PCC 8005]
          Length = 1242

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 203/614 (33%), Positives = 304/614 (49%), Gaps = 109/614 (17%)

Query: 248  ELKKKAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL K  EAA      KSQFLA +SHEIRTPMNGVLGM  +L+ TELD  Q+D+V+  + S
Sbjct: 567  ELVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDTKQKDFVQAIRTS 626

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
               L+S+IN++LD +K+E+ ++ELE + F+L   L++++ L + ++++KG+ELA  +   
Sbjct: 627  ADHLLSIINDILDFSKLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAAIVDRN 686

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            VP  L GDPGR RQ++ NLM N IKFT  G                EV   +S   N   
Sbjct: 687  VPRYLRGDPGRLRQVLLNLMSNGIKFTPAG----------------EVTLRVSRPPNYDI 730

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
              P+  R                                V+DTG GIP EAQ R+F  F 
Sbjct: 731  NAPLTLR------------------------------YEVQDTGIGIPAEAQERVFEAFS 760

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            QV  S +R  GGTG+GL I K L+  M GEIG  S+ + GSTF FT  F    + S    
Sbjct: 761  QVDASTTRKFGGTGLGLVICKQLLEVMGGEIGLESVVDQGSTFWFTLPFSISKTAS---- 816

Query: 545  SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--- 601
                 N P++++     +K LVVD      +  RY IQ  G++++  SD    LS++   
Sbjct: 817  ---FPNLPDTLTK----LKILVVDANASVRQSVRYLIQSWGMELQEASDPEMALSKLRDA 869

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ-------SKLFLLAN-SISSS 653
            A  ++  N+ + +Q           L +   + L    Q       +KL L+ +  + SS
Sbjct: 870  AHNNQPFNLAIFDQ----------NLLIYGKQNLAAVIQNEPLMSATKLVLMTSMRLLSS 919

Query: 654  RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL-------PSMSLRHL 706
              +   DG++  S ++KP+R+S L  +L  AM      N+  +          S +L   
Sbjct: 920  VEDLLDDGLA-KSYLIKPVRASRLFDALLTAMANEITVNLAEFRSGRDSLGDNSSTLSPA 978

Query: 707  LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
             L  K+L+ +D+ +N +V    L   G      E G++  ELL   H +D  FMD QMP+
Sbjct: 979  GLDLKVLLAEDHPINQQVLLNQLSLLGIEADLAENGEQVLELLNDRH-YDLVFMDCQMPK 1037

Query: 767  MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG 826
            +DG+  T+ +R+ E N                   + H  ++A+TA  + +  ++CL +G
Sbjct: 1038 LDGYATTEELRKREGN-------------------DRHTTVIALTAHAMPSDRQKCLSAG 1078

Query: 827  MDGYVSKPFEAEQL 840
            MD Y+SKP   E+L
Sbjct: 1079 MDDYISKPITQEEL 1092


>gi|237654499|ref|YP_002890813.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|237625746|gb|ACR02436.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 921

 Score =  282 bits (722), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 197/611 (32%), Positives = 298/611 (48%), Gaps = 99/611 (16%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           ++  K+ AEAA  AKS FLAT+SHEIRTPMNGVLGM ++L+D+ L+  Q+ +    + SG
Sbjct: 259 LLRAKEAAEAASQAKSDFLATMSHEIRTPMNGVLGMTELLLDSGLNHEQRHFAEAVENSG 318

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
           + L+ +IN++LD +K+ESG LELEAV F L  +L+D L++F+  ++ K +EL   +   V
Sbjct: 319 RHLLGIINDILDFSKIESGHLELEAVEFELGDLLEDTLAMFAQPAEKKRLELIADLPPEV 378

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
              + GDP R RQI+ NL  N+IKFTE+G + V   L+ E  D                G
Sbjct: 379 RRCVRGDPFRLRQIVGNLANNAIKFTERGEVVVRARLLGEGTD----------------G 422

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
           Y                                 L +SVEDTG GIP  AQ +IF  F Q
Sbjct: 423 Y--------------------------------RLRISVEDTGIGIPPHAQQKIFEQFSQ 450

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
           +  S +R  GGTG+GL+I + LVG M GEIG  S P  G+ F        G ST+     
Sbjct: 451 LDGSTTRQFGGTGLGLAICRRLVGLMGGEIGVDSRPGAGACFHIDLCLPAGQSTA----- 505

Query: 546 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIA 602
                +        + + ALVVD      ++    +   G+QVE  +D    L  L++ A
Sbjct: 506 -----EALRCDVALERVHALVVDDNATNREILLRQLHGWGMQVECSADGAGALDRLARAA 560

Query: 603 SGSKIINMILVEQEVWEKD-TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
           +  +   + +++  +   D   ++T    N    G     +L +L +S SS+      + 
Sbjct: 561 TAGEGFELAVLDMHMPHMDGLQLATAIRANPALAGV----RLVVLTSSYSSASVR-ERER 615

Query: 662 VSIPSVIMKPLRSS----MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDD 717
             I   + KP+R +    +L ++L+    V     + +   P+        G ++L+ +D
Sbjct: 616 AGILRCVHKPIRQAELFEVLCSALRAVDAVPAATAVADEWRPTR-------GGRVLLAED 668

Query: 718 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
           N VN +V  A L + G AV     G++A + L     FD   MD  MP +DG+EA+  IR
Sbjct: 669 NPVNQQVGLAMLAKLGIAVRVANDGEEAVK-LAATEAFDLILMDCHMPVLDGYEASAAIR 727

Query: 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
             EH                       VPI+A+TA+V++   E CL +GMD +++KP+  
Sbjct: 728 ASEHAPR--------------------VPIVALTANVMEGNRERCLAAGMDDFLAKPYAL 767

Query: 838 EQLYREVSRFF 848
           EQL   + R+ 
Sbjct: 768 EQLQSTLQRWM 778


>gi|300856171|ref|YP_003781155.1| sensor histidine kinase/response regulator hybrid [Clostridium
           ljungdahlii DSM 13528]
 gi|300436286|gb|ADK16053.1| putative sensor histidine kinase/response regulator hybrid
           [Clostridium ljungdahlii DSM 13528]
          Length = 949

 Score =  282 bits (721), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 193/617 (31%), Positives = 301/617 (48%), Gaps = 94/617 (15%)

Query: 232 TVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 291
           T  R+A+ E     + + K++AEAA++AKSQFLA +SHEIRTPMNG+ G LD+L  T L 
Sbjct: 304 TEQRLAERE-----LYKAKEQAEAANIAKSQFLANMSHEIRTPMNGIFGFLDLLQSTNLS 358

Query: 292 VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 351
           + Q+D++R A+++ K L+ +IN++LD +K+E+ KL +E + FNLR  ++D +SL   K+ 
Sbjct: 359 LEQKDFIREAKSASKVLLYIINDILDFSKIEAKKLTMEKIRFNLRNTIEDAVSLLVPKAV 418

Query: 352 DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 411
           +KG+EL   IS+ VPE ++GDP R RQI+ NL+ N++KFT KG I VTV  ++E     E
Sbjct: 419 EKGLELYTMISEGVPEEVVGDPSRLRQILNNLISNAVKFTNKGEISVTVDCLKE-----E 473

Query: 412 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 471
            ET +                                           L   V+DTG GI
Sbjct: 474 NETAV-------------------------------------------LNFEVKDTGIGI 490

Query: 472 PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 531
             +    IF  F Q   S +R +GGTG+GL+IS  LV  M GEI   SI   GS F F  
Sbjct: 491 RKDHIDNIFKSFSQADTSTTRKYGGTGLGLAISSELVKMMGGEIHVESIFGKGSIFKFDV 550

Query: 532 VFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 591
                   S +  + +          +  GM  L+V+      K+   ++Q  G++V   
Sbjct: 551 RLKIVKRASGQKFAFE----------KLDGMNILIVNDDVNNRKIINSYLQETGLKVSEA 600

Query: 592 SDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS 651
            +    ++ I S +   N I +    ++ +        N L+ +      KL LL +   
Sbjct: 601 ENGSSAITTILSNASTKNKINIAIMDYQMNDMSGYELANTLKTIPFAKNIKLILLTSITQ 660

Query: 652 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL---- 707
              A T  +     S + KP+R   L A +   +G+  +    N E   +  +H++    
Sbjct: 661 KGNAETVKE-YGFSSYLSKPVRRDDLLACIAMVLGLKKE----NGEGHQVITKHIVKEVK 715

Query: 708 --LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 765
             L  +IL+V+DN +N K+    LK +         G +A + ++    +D  FMD QMP
Sbjct: 716 NALEPRILLVEDNKMNRKIVITMLKSHDMTCDVAVDGSEALKAVLQK-DYDVVFMDCQMP 774

Query: 766 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 825
            MDG+E T  IR +E +                     H  I+AMTA+ +    E+C+++
Sbjct: 775 VMDGYECTSKIRMLEGD-------------------KKHTTIIAMTANAMDGDSEKCIKT 815

Query: 826 GMDGYVSKPFEAEQLYR 842
           GMD Y+SKP    ++++
Sbjct: 816 GMDDYISKPINFNKMFK 832


>gi|196228263|ref|ZP_03127130.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196227666|gb|EDY22169.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 1079

 Score =  282 bits (721), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 199/624 (31%), Positives = 302/624 (48%), Gaps = 97/624 (15%)

Query: 237 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 296
           AK  E  H    L  +A AA+ AK  FLA +SHEIRTPMNG++GM ++ +++ +   QQ+
Sbjct: 388 AKTAEAEH----LAVEATAANRAKRDFLAVMSHEIRTPMNGIIGMTELALNSGVTPIQQE 443

Query: 297 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 356
           Y+   ++S + L+ L+N++LD +K+E+G+LELE + F+LR +L D +     ++   G+E
Sbjct: 444 YLEMVRSSAETLLELLNDILDFSKIEAGRLELEHIDFDLRDLLGDTMQALGVRAHAHGLE 503

Query: 357 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 416
           LA+ I   VP+ L GDP R RQ++ NL+GN++KFTE+G + V V                
Sbjct: 504 LALQIRPDVPDALTGDPHRLRQVVVNLVGNALKFTERGEVTVLV---------------- 547

Query: 417 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476
              +N  SG                              + + L   V DTG GIP EAQ
Sbjct: 548 ---ENDPSG-----------------------------DEKVRLRFVVRDTGIGIPPEAQ 575

Query: 477 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536
           +RIF  F Q   S +R  GG+G+GL+I+  LVG M G+I   S    GSTFTFTA F   
Sbjct: 576 ARIFNAFSQADSSTTRRFGGSGLGLAITSQLVGMMGGQINVESQVGQGSTFTFTAAF--- 632

Query: 537 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV-VSDQL 595
                     +  ++P     E + ++ L VD       + R       ++V +  S   
Sbjct: 633 ---------DRQPDRPPITLPELEHLRVLAVDDNATNRLILRELFTSWRMEVVIADSAPA 683

Query: 596 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 655
              +   +G     + LV  ++   D     L V  +R       +++ +L +S +    
Sbjct: 684 ALAALDRAGRDGQPIALVVTDMMMPDVDGFGL-VERMRASPLLRDTQVIMLTSS-NRPED 741

Query: 656 NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIV 715
                 + I + ++KP++ S L  S+   MG  ++   +  E      R L    +IL+ 
Sbjct: 742 MARCQQMGIGAHLVKPIKQSRLMDSIVTVMGRSSRRREKPVETDVPRQRPL----RILLA 797

Query: 716 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI 775
           +DN VN ++A   L+ +G  V     G++A EL      FD   MD QMP M GFEAT  
Sbjct: 798 EDNAVNQRLAVVNLESWGHTVTVAHNGREAVELFT-AQPFDLILMDSQMPRMGGFEATAE 856

Query: 776 IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
           IR  E                    S  HVPI+AMTA+V++ + EECL +GMDGYV+KP 
Sbjct: 857 IRRREAG------------------SGAHVPIVAMTANVMKGSREECLGAGMDGYVAKPM 898

Query: 836 EAEQLYREVSRFFP-------PIP 852
              +L +E++   P       P+P
Sbjct: 899 RRHELIKEIAAVVPGFILGSEPVP 922


>gi|440683655|ref|YP_007158450.1| GAF sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
 gi|428680774|gb|AFZ59540.1| GAF sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
          Length = 1069

 Score =  281 bits (720), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 208/665 (31%), Positives = 323/665 (48%), Gaps = 83/665 (12%)

Query: 201  FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAK 260
            F+Q  P  +  +      L IA    H+ +    +  ++      + + K  AEAA+ AK
Sbjct: 463  FRQWTPEEIELLEAVAAQLGIALAQAHLLEQETRQREELTLKNSALEQAKHAAEAANRAK 522

Query: 261  SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 320
            S FLA +SHEIRTPMN V+GM  +L+DT L V QQD+V T + SG++L+++IN++LD +K
Sbjct: 523  SDFLAMMSHEIRTPMNAVIGMTGVLLDTNLTVQQQDFVETIRNSGESLLTIINDILDFSK 582

Query: 321  VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 380
            +ESGKLELE  SF LR  ++ VL   + K+ +K +ELA  I+ +VP  +IGD  R RQI+
Sbjct: 583  IESGKLELEEQSFELRNCVERVLDTLAPKAAEKDIELAYLINSQVPAKIIGDLTRVRQIL 642

Query: 381  TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 440
             NL+ N+IKFT+KG + ++V+                         P+A           
Sbjct: 643  MNLVSNAIKFTKKGEVILSVH-----------------------AKPIA----------- 668

Query: 441  FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 500
             N    + P    S     ++ +++DTG GIP    + +F PF Q   S +R +GGTG+G
Sbjct: 669  -NTVAESHP----SPKTYEILFAIKDTGIGIPANKMNLLFQPFSQADSSTTRKYGGTGLG 723

Query: 501  LSISKYLVGRMKGEIGFVSIPNIGST--------FTFTAV-FGNGSSTS------NEHNS 545
            L ISK L   M G +   S  +IG          F  + + F  GS+ S       + NS
Sbjct: 724  LVISKRLSEMMGGTLWVESQGSIGGNPSSRWQDEFLISCLPFDQGSTFSFTITVPEDINS 783

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
               + + ++ S++  G + L+VD  P   ++     +   +Q+  V+   Q L QI  G 
Sbjct: 784  NLDSEELSTDSAQLTGKRLLIVDDNPAHCQILSLQARSWNMQIYAVTSAQQALEQIRQGV 843

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
            +  ++ +++  + E D          +RK        L +L  S++ +  +     + I 
Sbjct: 844  E-FDIAILDLNMPEMD---GVTLAQEIRKQSNCKTIPLVILT-SLTKAEISQEYSDIKIA 898

Query: 666  SVIMKPLRSSMLAASLQRAMGVGN-KGNIRNWELPSMSLRHLL--LGRKILIVDDNNVNL 722
            + + KP++ S L  +L    G    K  I   ++P +   HL   L  +IL+ +D  VN 
Sbjct: 899  AYLTKPVKQSQLYDALAHVFGNQPIKAIISPTQIPEIDF-HLAEKLPLRILLAEDTVVNQ 957

Query: 723  KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
            KVA   LK+ G        G +    L     +D   MD+QMPEMDG E T+II      
Sbjct: 958  KVALLMLKKIGYRADVAANGLEVLTALQ-RQSYDVVLMDVQMPEMDGLETTQII------ 1010

Query: 783  FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                 +  E S   Y         I+AMTA+ +Q   E CL +GMD Y+SKP +   L+ 
Sbjct: 1011 ----CQGWEASQRPY---------IIAMTANAMQGDREICLAAGMDDYISKPVQIVDLFH 1057

Query: 843  EVSRF 847
             +SR+
Sbjct: 1058 ALSRY 1062


>gi|209524981|ref|ZP_03273526.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209494630|gb|EDZ94940.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1242

 Score =  281 bits (719), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 201/614 (32%), Positives = 302/614 (49%), Gaps = 109/614 (17%)

Query: 248  ELKKKAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL K  EAA      KSQFLA +SHEIRTPMNGVLGM  +L+ TELD  Q+D+V+  + S
Sbjct: 567  ELVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDTKQKDFVQAIRTS 626

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
               L+S+IN++LD +K+E+ ++ELE + F+L   L++++ L + ++++KG+ELA  +   
Sbjct: 627  ADHLLSIINDILDFSKLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAAIVDRN 686

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            VP  L GDPGR RQ++ NLM N IKFT  G                EV   +S   N   
Sbjct: 687  VPRYLRGDPGRLRQVLLNLMSNGIKFTPAG----------------EVTLRVSRPPNYDI 730

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
              P+  R                                V+DTG GIP EAQ R+F  F 
Sbjct: 731  NAPLTLR------------------------------YEVQDTGIGIPAEAQERVFEAFS 760

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            QV  S +R  GGTG+GL I K L+  M GEIG  S+ + GSTF FT  F    + S    
Sbjct: 761  QVDASTTRKFGGTGLGLVICKQLLEVMGGEIGLESVVDQGSTFWFTLPFSISKTAS---- 816

Query: 545  SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--- 601
                 N P++++     +K LVVD      +  RY IQ  G++++  SD    LS++   
Sbjct: 817  ---FPNLPDTLTK----LKILVVDANASVRQSVRYLIQSWGMELQEASDPEMALSKLRDA 869

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS--------SS 653
            A  ++  N+ + +Q           L +   + L    Q++  + A  +         SS
Sbjct: 870  AHNNQPFNLAIFDQ----------NLLIYGKQNLAAVIQNEPLMSATKLVLMTSMRRLSS 919

Query: 654  RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL-------PSMSLRHL 706
              +   DG++  S ++KP+R+S L  +L  AM      N+  +          S +L   
Sbjct: 920  VEDLLDDGLA-KSYLIKPVRASRLFDALLTAMANEITVNLAEFHSGRDSLGDNSSTLSPA 978

Query: 707  LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
             L  K+L+ +D+ +N +V    L   G      E G++  ELL   H +D  FMD QMP+
Sbjct: 979  GLDLKVLLAEDHPINQQVLLNQLSLLGIEADLAENGEQVLELLNDRH-YDLVFMDCQMPK 1037

Query: 767  MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG 826
            +DG+  T+ +R+ E N                   + H  ++A+TA  + +  ++CL +G
Sbjct: 1038 LDGYATTEELRKREGN-------------------DRHTTVIALTAHAMPSDRQKCLSAG 1078

Query: 827  MDGYVSKPFEAEQL 840
            MD Y+SKP   E+L
Sbjct: 1079 MDDYISKPITQEEL 1092


>gi|423067354|ref|ZP_17056144.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
 gi|406710928|gb|EKD06130.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
          Length = 1242

 Score =  281 bits (719), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 201/614 (32%), Positives = 302/614 (49%), Gaps = 109/614 (17%)

Query: 248  ELKKKAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL K  EAA      KSQFLA +SHEIRTPMNGVLGM  +L+ TELD  Q+D+V+  + S
Sbjct: 567  ELVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDTKQKDFVQAIRTS 626

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
               L+S+IN++LD +K+E+ ++ELE + F+L   L++++ L + ++++KG+ELA  +   
Sbjct: 627  ADHLLSIINDILDFSKLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAAIVDRN 686

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            VP  L GDPGR RQ++ NLM N IKFT  G                EV   +S   N   
Sbjct: 687  VPRYLRGDPGRLRQVLLNLMSNGIKFTPAG----------------EVTLRVSRPPNYDI 730

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
              P+  R                                V+DTG GIP EAQ R+F  F 
Sbjct: 731  NAPLTLR------------------------------YEVQDTGIGIPAEAQERVFEAFS 760

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            QV  S +R  GGTG+GL I K L+  M GEIG  S+ + GSTF FT  F    + S    
Sbjct: 761  QVDASTTRKFGGTGLGLVICKQLLEVMGGEIGLESVVDQGSTFWFTLPFSISKTAS---- 816

Query: 545  SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--- 601
                 N P++++     +K LVVD      +  RY IQ  G++++  SD    LS++   
Sbjct: 817  ---FPNLPDTLTK----LKILVVDANASVRQSVRYLIQSWGMELQEASDPEMALSKLRDA 869

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS--------SS 653
            A  ++  N+ + +Q           L +   + L    Q++  + A  +         SS
Sbjct: 870  AHNNQPFNLAIFDQ----------NLLIYGKQNLAAVIQNEPLMSATKLVLMTSMRRLSS 919

Query: 654  RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL-------PSMSLRHL 706
              +   DG++  S ++KP+R+S L  +L  AM      N+  +          S +L   
Sbjct: 920  VEDLLDDGLA-KSYLIKPVRASRLFDALLTAMANEITVNLAEFHSGRDSLGDNSSTLSPA 978

Query: 707  LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
             L  K+L+ +D+ +N +V    L   G      E G++  ELL   H +D  FMD QMP+
Sbjct: 979  GLDLKVLLAEDHPINQQVLLNQLSLLGIEADLAENGEQVLELLNDRH-YDLVFMDCQMPK 1037

Query: 767  MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG 826
            +DG+  T+ +R+ E N                   + H  ++A+TA  + +  ++CL +G
Sbjct: 1038 LDGYATTEELRKREGN-------------------DRHTTVIALTAHAMPSDRQKCLSAG 1078

Query: 827  MDGYVSKPFEAEQL 840
            MD Y+SKP   E+L
Sbjct: 1079 MDDYISKPITQEEL 1092


>gi|254411816|ref|ZP_05025592.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
 gi|196181538|gb|EDX76526.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
          Length = 1478

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 193/612 (31%), Positives = 305/612 (49%), Gaps = 92/612 (15%)

Query: 260  KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
            K+QFLA +SHEIRTPMNGVLGM ++L+ T+L+  Q D+V+T Q SG+ L+ +IN++LD +
Sbjct: 529  KAQFLANMSHEIRTPMNGVLGMSELLLTTDLNPRQLDFVKTLQVSGEHLLGVINDILDFS 588

Query: 320  KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
            K+E+G++ L+    N+   L+DVL L S +++ K +ELA+ +   VP  L+GD GR RQI
Sbjct: 589  KLEAGEMRLDVDELNINRSLEDVLDLCSPQAEAKDLELALLVDTDVPRRLMGDVGRLRQI 648

Query: 380  ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
             TNL+ NSIKFTE G + + V + +E+                                 
Sbjct: 649  CTNLVSNSIKFTESGEVVIRVSVHQEL--------------------------------- 675

Query: 440  TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
                            D + L  +V DTG GI  E +S++F  F QV  S +R +GGTG+
Sbjct: 676  -------------EEQDKLQLRFAVRDTGIGINPEDKSKLFQAFSQVDSSTTRKYGGTGL 722

Query: 500  GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM-NNQPNSVSSE 558
            GL+I K LV  M GEIG  S   +GSTF FT  FG     + E+ S ++ +N P S  S 
Sbjct: 723  GLAICKQLVEMMGGEIGVESQLGVGSTFWFTITFGKVPVGTEENESDRIFSNLPISPES- 781

Query: 559  FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKIINMILVEQ 615
             QG + L+VD RPI  ++ +Y ++  G++V+   +    L  +   A   K  ++ L++ 
Sbjct: 782  LQGKRVLIVDDRPINRQIVKYQLEARGMEVDEADNGIIALNAMQASAEAGKPYDVALLDM 841

Query: 616  EVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS 675
            ++ + D S     +  L      +     +L  S+ +  +            ++KP++ S
Sbjct: 842  KMPKIDGST----LGRLILAEPDWAKTKLVLMTSMHAGDSAQPLLKSGFADYLVKPVKES 897

Query: 676  MLAASLQRAMGV-------GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
             L  SLQ+ +           +  I +   P+     L    KIL+V+D  +NLK+    
Sbjct: 898  QLLESLQKILAAEIPATLFSTQSAIPDPSQPAPQSTCL----KILLVEDTPINLKLVRHQ 953

Query: 729  LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
            ++  G      E G++A + +   + +D   MD QMP MDG++A + +RE E        
Sbjct: 954  VQLLGHESESAENGQEALDKI-AKNDYDIVLMDCQMPVMDGYQAVRTLREREG------- 1005

Query: 789  RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL------YR 842
                        ++ H  ++ MTA  +Q   E+CL +GMD Y+SKP   + L      + 
Sbjct: 1006 ------------TDRHTIVIGMTAYAMQGDREKCLAAGMDDYLSKPVMVKNLAPVLERWS 1053

Query: 843  EVSRFFPPIPDR 854
             V +   P P+R
Sbjct: 1054 SVVKGVSPKPER 1065



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 20/136 (14%)

Query: 712  ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
            +L+V+D  +NLK+    ++  G      E G+KA E L   + +D   MD QMP MDG++
Sbjct: 1226 LLLVEDTPINLKLVQHQVRLLGHQWDSAENGEKALEKL-AENDYDIVLMDCQMPVMDGYK 1284

Query: 772  ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
            AT+ +R+ E                    +N H  ++ MTA  +    ++C+ +GMD Y+
Sbjct: 1285 ATQTLRQREG-------------------TNHHTIVIGMTAYAMPGDRDKCIAAGMDDYL 1325

Query: 832  SKPFEAEQLYREVSRF 847
            SKP   ++L   + R+
Sbjct: 1326 SKPVMVKELKVMLQRW 1341


>gi|376004438|ref|ZP_09782141.1| Signal transduction histidine kinase [Arthrospira sp. PCC 8005]
 gi|375327203|emb|CCE17894.1| Signal transduction histidine kinase [Arthrospira sp. PCC 8005]
          Length = 1355

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 219/713 (30%), Positives = 336/713 (47%), Gaps = 134/713 (18%)

Query: 167  PISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVG 226
            PI +YG        W  + LN  +PFR  +     K  A W        IG         
Sbjct: 605  PIKVYGQVYGTLCFWSQNPLN--EPFRAVDQEL-LKLMAQW--------IG--------- 644

Query: 227  HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM 286
                + + R    +E    + + + +A AA  AKS+FLAT+SHEIRTPMN V+GM  +L+
Sbjct: 645  ----SEIERQQTAQE----LSQARDEALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLL 696

Query: 287  DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 346
            DT L + QQD+V T ++S  AL+SLIN++LD +K+ESGKL+LEA  F+LR  L++ L L 
Sbjct: 697  DTPLSLVQQDFVETIRSSSDALLSLINDILDFSKIESGKLDLEAFPFSLRTCLEESLDLL 756

Query: 347  SGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 406
            + K+  K +EL  +I    P  ++GD  R RQI+ NL+ N++KFT +G + V+V      
Sbjct: 757  ATKAASKSLELGYFIDAYTPNEVVGDMARVRQILVNLLSNAVKFTARGEVLVSV------ 810

Query: 407  VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 466
                       S+K   S   +                      KS  +    + V+V D
Sbjct: 811  -----------SAKPLFSDLELT--------------------AKSMYSTHYQIEVAVSD 839

Query: 467  TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS------- 519
            TG GIP++  +R+F  F QV  S +R +GGTG+GL+IS+ L   M G++  VS       
Sbjct: 840  TGIGIPVDRMNRLFKSFSQVDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGDAIGGH 899

Query: 520  ----------IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 569
                       P  GSTF F+ V           +SQ +  Q N  + E  G + L++D 
Sbjct: 900  PPENWQINKDTPTQGSTFYFSIVV---------QSSQNLLPQWNH-ADELAGKRLLIIDS 949

Query: 570  RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFV 629
             P   ++    +Q  G+ VE      + ++ +  G K  ++ +VE E+   D      F 
Sbjct: 950  HPTNRQILTKQVQCWGLVVEDTDSPTEAIAWLKQG-KTFDIAIVEMEIANLD---GFNFA 1005

Query: 630  NNLRKLGCGFQSKLFLLANSISSSRAN-TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 688
              +R+   G    L +L   IS ++ N   TD     + + KP++ S L   L   +  G
Sbjct: 1006 TQVRQTSAGVDLPLVML---ISVAQQNFNPTDHRDFVAFLNKPIKQSPLYNILINVL-CG 1061

Query: 689  NKGNIRNW---------ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCV 739
                I+NW         ++P ++ +   L  +IL+ +D+ VN KVA   L+R G      
Sbjct: 1062 EPLQIKNWSRNQMRSPQDIPLLAEK---LPLRILLAEDHLVNQKVALQILQRMGYRADVA 1118

Query: 740  ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYEN 799
              G +  E L     +D   MD+QMP MDG EA + I+                 + Y+N
Sbjct: 1119 GNGLEVLEAL-ERQPYDVILMDMQMPIMDGLEAARQIK-----------------KRYDN 1160

Query: 800  VSNFHVP---ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
                + P   I+A+TA+ +++   EC+ +GMD Y+SKP   EQL + +    P
Sbjct: 1161 QEKPYSPRPRIIAVTANAMESDRAECIAAGMDDYISKPIRMEQLVKVLRNCRP 1213


>gi|343516482|ref|ZP_08753517.1| PAS domain protein [Vibrio sp. N418]
 gi|342796067|gb|EGU31762.1| PAS domain protein [Vibrio sp. N418]
          Length = 1814

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 199/645 (30%), Positives = 310/645 (48%), Gaps = 105/645 (16%)

Query: 222  ASLVG-HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
            A L G  +F   V    + +E    +M  K+KAE A  AKS FLA +SHEIRTPMN ++G
Sbjct: 954  AGLTGEQLFTGIVRDATERKEAERELMLAKQKAEEATQAKSDFLANMSHEIRTPMNAIIG 1013

Query: 281  MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
            M  + M T+L+  Q DYV   Q S ++L+ +IN++LD +K+E+GKL+LE   F+L + +D
Sbjct: 1014 MSYLAMQTDLNKKQSDYVNKIQTSAESLLGIINDILDFSKIEAGKLDLEQTEFDLESTID 1073

Query: 341  DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
            +++ + S ++Q+K +EL V +  ++P  LIGDP R  QI+ NL  N+IKFT++G I V  
Sbjct: 1074 NLVQVVSQRTQEKDLELLVDLDPQLPTHLIGDPLRLGQILLNLANNAIKFTDQGEIIVKA 1133

Query: 401  YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 460
             L+E+  D +E    +S                                           
Sbjct: 1134 ELIEQSDDKLEARFSVS------------------------------------------- 1150

Query: 461  IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520
                 DTG G+  E  +R+F  F Q   S +R +GGTG+GL+ISK L   M+G I   S 
Sbjct: 1151 -----DTGIGMTEEQMARLFQSFSQADASTTRKYGGTGLGLTISKTLAEMMEGSIWVESE 1205

Query: 521  PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 580
               GSTF FTA FG  S         ++  QP       + +  L+VD      ++    
Sbjct: 1206 SGQGSTFFFTAQFGLSS---------EIPQQPVLAPESMKEVSILIVDDSVAAREILFSL 1256

Query: 581  IQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640
             Q L    +V S   + L +I            E      D  +S   +  +  +  G Q
Sbjct: 1257 CQSLKFNADVASSGAEALEKIRHA---------ENNEQHFDVILSDWKMPQMDGIALGQQ 1307

Query: 641  SKL------------FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM--- 685
             +L            F++  +        +  GV+I + + KP+ SS L  +L R M   
Sbjct: 1308 IELIHQSKEIATLPHFVMVTAYDKDDMLANRQGVNIVASMTKPVSSSTLLDTLSRVMTKE 1367

Query: 686  GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA 745
            G+ NK N  N +L + S+   + G +IL+V+DN +N ++A   L+  G  V     G++A
Sbjct: 1368 GITNKTNTSN-KLDT-SIAQGIAGARILLVEDNAINQEIATELLQMVGMDVTTANNGQEA 1425

Query: 746  TELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 805
             +L+     FD   MDIQMP MDG++AT++IR                   Y++     +
Sbjct: 1426 VDLV-GSQDFDLVLMDIQMPVMDGYQATQVIRNTGQ---------------YDD-----L 1464

Query: 806  PILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
            PI+AMTA+ +    E+CL +GM+ ++ KP    Q+++ +  +  P
Sbjct: 1465 PIIAMTANAMSGDKEKCLAAGMNDHLPKPINPNQVFQALVDWIEP 1509


>gi|410672176|ref|YP_006924547.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
 gi|409171304|gb|AFV25179.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
          Length = 1772

 Score =  280 bits (717), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 193/606 (31%), Positives = 302/606 (49%), Gaps = 88/606 (14%)

Query: 252  KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
            +AE A  AKS+FLA +SHEIRTPMNGV+GM  +L+DTEL+  Q+ YV T QASG+AL+ +
Sbjct: 1121 RAEEATKAKSEFLANMSHEIRTPMNGVIGMTGLLLDTELNEEQRHYVETVQASGEALLEI 1180

Query: 312  INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
            IN++LD +K+E+GKLELE + F+L ++LDD  S+ S ++ DKG+E        VP  + G
Sbjct: 1181 INDILDFSKIEAGKLELEVLDFDLHSLLDDFASMLSIRAHDKGLEFICAAEPAVPAYIRG 1240

Query: 372  DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
            D GR +Q++ NL GN++KFT +G + V V        ++E ET+  +             
Sbjct: 1241 DTGRLQQVLVNLTGNAVKFTHQGEVAVRV--------TLESETDAGAL------------ 1280

Query: 432  CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
                                        L  SV DTG GIP +    +F  F QV  S +
Sbjct: 1281 ----------------------------LRFSVRDTGIGIPKDKIGSLFGQFYQVDASTT 1312

Query: 492  RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 551
            R +GGTG+GL+ISK LV  M GEIG  S    GS F FTA F            Q   ++
Sbjct: 1313 RQYGGTGLGLAISKQLVEMMGGEIGVRSEEGKGSEFWFTAHFA----------KQPDCDR 1362

Query: 552  PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKII 608
               +S + Q  + LVVD      ++    +   G + +   D    LQ L +    ++  
Sbjct: 1363 KKIMSGDIQSARILVVDDNATNREILINQLSSWGSRAKEAVDGPMALQALYKAYEDNEPF 1422

Query: 609  NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 668
             + L++ ++   D +     + +  KL    ++   ++ +S+    A+   +     + +
Sbjct: 1423 QVALLDMQMPGMDGATLARIIKSDEKL----KNTHLIMLSSMGQWSASQQLEKSYFEAYL 1478

Query: 669  MKPLRSSMLAASLQRAMGVGNKGNIRNWELP-SMSLRHLLLGRKILIVDDNNVNLKVAAA 727
             KP+R S L   L   + +  +  + +  L  +++ +  +   ++L+ +DN VN KVA +
Sbjct: 1479 TKPVRQSSLLDKLSSILSMETEKQMSHSPLTMNLTSKRGINNVRVLLAEDNIVNQKVAQS 1538

Query: 728  GLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785
             LK+ G     V  G +A + L  +P   +D   MD+QMPEMDG EAT++IR+      N
Sbjct: 1539 MLKKLGFRADTVANGAEAVKALETLP---YDLVLMDVQMPEMDGMEATRLIRQPGSAVLN 1595

Query: 786  RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 845
            R                  +PI+AMTA  ++   E  + +GMD Y+SKP   + L   + 
Sbjct: 1596 R-----------------EIPIIAMTAHAMKGDRERFIEAGMDDYISKPVSLKSLIELLD 1638

Query: 846  RFFPPI 851
            ++   I
Sbjct: 1639 KWLTMI 1644


>gi|209523540|ref|ZP_03272094.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|423065813|ref|ZP_17054603.1| putative two-component hybrid sensor and regulator [Arthrospira
            platensis C1]
 gi|209495945|gb|EDZ96246.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|406712571|gb|EKD07755.1| putative two-component hybrid sensor and regulator [Arthrospira
            platensis C1]
          Length = 1355

 Score =  280 bits (717), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 219/713 (30%), Positives = 335/713 (46%), Gaps = 134/713 (18%)

Query: 167  PISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVG 226
            PI +YG        W  + LN  +PFR  +     K  A W        IG         
Sbjct: 605  PIKVYGQVYGTLCFWSQNPLN--EPFRAVDQEL-LKLMAQW--------IG--------- 644

Query: 227  HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM 286
                + + R    +E    + + + +A AA  AKS+FLAT+SHEIRTPMN V+GM  +L+
Sbjct: 645  ----SEIERQQTAQE----LSQARDEALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLL 696

Query: 287  DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 346
            DT L + QQD+V T ++S  AL+SLIN++LD +K+ESGKL+LEA  F+LR  L++ L L 
Sbjct: 697  DTPLSLVQQDFVETIRSSSDALLSLINDILDFSKIESGKLDLEAFPFSLRTCLEESLDLL 756

Query: 347  SGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 406
            + K+  K +EL  +I    P  ++GD  R RQI+ NL+ N++KFT +G + V+V      
Sbjct: 757  ATKAASKSLELGYFIDAYTPNEVVGDMARVRQILVNLLSNAVKFTARGEVLVSV------ 810

Query: 407  VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 466
                       S+K   S   +                      KS  +    + V+V D
Sbjct: 811  -----------SAKPLFSDLELT--------------------AKSMYSTHYQIEVAVSD 839

Query: 467  TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS------- 519
            TG GIP++  +R+F  F QV  S +R +GGTG+GL+IS+ L   M G++  VS       
Sbjct: 840  TGIGIPVDRMNRLFKSFSQVDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGDAIGGH 899

Query: 520  ----------IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 569
                       P  GSTF F+ V           +SQ +  Q N  + E  G + L++D 
Sbjct: 900  PPENWQINKDTPTQGSTFYFSIVV---------QSSQNLLPQWNH-ADELAGKRLLIIDS 949

Query: 570  RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFV 629
             P   ++    +Q  G+ VE      + ++ +  G K  ++ +VE E+   D      F 
Sbjct: 950  HPTNRQILTKQVQCWGLVVEDTDSPTEAIAWLKQG-KTFDIAIVEMEIANLD---GFNFA 1005

Query: 630  NNLRKLGCGFQSKLFLLANSISSSRAN-TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 688
              +R+   G    L +L   IS  + N   TD     + + KP++ S L   L   +  G
Sbjct: 1006 TQVRQTSAGVDLPLVML---ISVGQQNFNPTDHRDFVAFLNKPIKQSPLYNILINVL-CG 1061

Query: 689  NKGNIRNW---------ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCV 739
                I+NW         ++P ++ +   L  +IL+ +D+ VN KVA   L+R G      
Sbjct: 1062 EPLQIKNWSRNQMRSPQDIPLLAEK---LPLRILLAEDHLVNQKVALQILQRMGYRADVA 1118

Query: 740  ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYEN 799
              G +  E L     +D   MD+QMP MDG EA + I+                 + Y+N
Sbjct: 1119 GNGLEVLEAL-ERQPYDVILMDMQMPIMDGLEAARQIK-----------------KRYDN 1160

Query: 800  VSNFHVP---ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
                + P   I+A+TA+ +++   EC+ +GMD Y+SKP   EQL + +    P
Sbjct: 1161 QEKPYSPRPRIIAVTANAMESDRAECIAAGMDDYISKPIRMEQLVKVLRNCRP 1213


>gi|392410312|ref|YP_006446919.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
 gi|390623448|gb|AFM24655.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
          Length = 1147

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 190/621 (30%), Positives = 302/621 (48%), Gaps = 92/621 (14%)

Query: 236  IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 295
            I + +E    ++  ++ AE A  AKS+FLA +SHEIRTP+NG++GM  + ++T+L   Q 
Sbjct: 480  ITERKEAEQALIRAREAAEQASRAKSEFLANMSHEIRTPINGIVGMTQLALNTQLTPEQV 539

Query: 296  DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 355
            +Y+   + S +AL+ LIN++LD +K+E+GKLEL AV F+LR  + + ++  + ++  KG+
Sbjct: 540  EYLEAVETSAEALLRLINDILDFSKMEAGKLELVAVDFSLRDSIAETMTTLAVQAHAKGL 599

Query: 356  ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415
            EL   +++ +P+TL GDPGR RQI+ NL+ N++KFTE+G + V            +V+ +
Sbjct: 600  ELLYQVAESIPDTLTGDPGRLRQILINLIANALKFTERGEVVV------------KVDPD 647

Query: 416  LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 475
              + +     + VAD                                    TG GIP E 
Sbjct: 648  SETKREIRLHFSVAD------------------------------------TGIGIPAEK 671

Query: 476  QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535
            Q RIF  F Q   S SR +GGTG+GL+IS  LV  M G I   S P  GS F FT+ F  
Sbjct: 672  QQRIFNAFEQADGSTSRKYGGTGLGLAISSELVRMMDGSIWLESEPGRGSIFHFTSTFRV 731

Query: 536  GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 595
                 +          P  VS+  + +  LVVD      ++    + +   +  +V    
Sbjct: 732  AKEPIH-------TPAPADVSA-LENLPVLVVDDNATNRRILENTLLQWQTKPTIVDGGE 783

Query: 596  QCLSQIASGSK--------IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLA 647
              L  + S  +        I + ++ E + +E         V  + +        + +L 
Sbjct: 784  AALHAMKSAHEEGRPFKLVITDCMMPEMDGFE--------LVRRINEHPSWATPTIIMLT 835

Query: 648  NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL 707
            ++     A      + I + ++KP++ S L  ++ R +        +   +   S+R   
Sbjct: 836  SAGERGDAARCM-KLGISAYLLKPIKQSDLFFTISRVLKEPQDHPAQPSLITRHSIREST 894

Query: 708  LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
                IL+ +DN VN K+A   L+R G  V     G++A + L    +FD   MD+QMP M
Sbjct: 895  KRLHILLAEDNAVNQKLAVKMLERMGHTVSVSANGQEALDCL-KIQKFDLVLMDVQMPIM 953

Query: 768  DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
            DG EAT+I+RE                  +E  SN HVPI+AMTA  ++   E+CL +GM
Sbjct: 954  DGLEATRIVRE------------------HEKTSNEHVPIVAMTAYAMKGDKEKCLDAGM 995

Query: 828  DGYVSKPFEAEQLYREVSRFF 848
            DGY+SKP  A++L+  +   F
Sbjct: 996  DGYISKPINAQELFETLEDLF 1016


>gi|189424607|ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420866|gb|ACD95264.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 929

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 203/606 (33%), Positives = 299/606 (49%), Gaps = 95/606 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K++AEA+  AKS+FLA +SHEIRTPMNG+LGM ++LMDTEL+  Q DY+R+ + S + L+
Sbjct: 272 KEQAEASSRAKSEFLANMSHEIRTPMNGILGMTELLMDTELNPQQFDYLRSVKVSAENLM 331

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +IN++LD +K+E G+LE EA+ F LR++L   L   S ++  KG+EL   +   +P+TL
Sbjct: 332 DIINDILDFSKIEVGRLETEAIPFMLRSMLGQTLRTLSVRAAQKGLELVFQVDPDLPDTL 391

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDPGR RQ++ NL GN++KFT++G + + V                 S +  L G  + 
Sbjct: 392 IGDPGRLRQVLLNLAGNAVKFTDQGEVELLV-----------------SKQQELPGKELL 434

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
            R                                V D G GI  E Q RIF PF Q   S
Sbjct: 435 LR------------------------------FEVRDRGIGISPEHQQRIFAPFEQADLS 464

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            ++ +GGTG+GL+IS  LV  M GEIG  S+   GSTF FT           +H +QQ  
Sbjct: 465 TTKKYGGTGLGLAISSRLVQLMGGEIGLESVAGQGSTFWFT--LRCQVQEQPQHEAQQ-- 520

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--ASGSKI 607
                 +    G  ALVVD   I  ++    + R G+ V       +  S +  A   + 
Sbjct: 521 ------TGTLSGYLALVVDDIAINRQLLERFLTRWGMDVLTAGSAEEAFSMLEYARSRRP 574

Query: 608 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
           + ++L + ++ + D       V  +R      + KL LL ++     A    + + +   
Sbjct: 575 VQLLLTDLQMPDCD---GWGLVEQIRNDQRYDELKLVLLPSAGKRGDARRCRE-LKVNGY 630

Query: 668 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS--LRHLLLGRK----ILIVDDNNVN 721
           + KP+  S L  +L        K  I   E P  S   RH +   +    IL+VDD  +N
Sbjct: 631 LTKPVIHSELYEAL--------KAIIHGKEQPGSSPVTRHHVREAQGSCSILLVDDVEIN 682

Query: 722 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
            ++A   L++ G  VV    G +A +      +FD  FMDIQMP MDGFEAT  IR    
Sbjct: 683 RELARIILEKRGHRVVQAANGLEAVD-AARKERFDLVFMDIQMPLMDGFEATNEIR---- 737

Query: 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
                      S E  + +    VP++AMTA  +Q   + CL +GMDGY++KP + + L 
Sbjct: 738 -----------SFELSQGLQP--VPVIAMTAYALQGDRDRCLAAGMDGYIAKPIKEDDLC 784

Query: 842 REVSRF 847
           R + + 
Sbjct: 785 RVIGQM 790


>gi|406833703|ref|ZP_11093297.1| multi-sensor hybrid histidine kinase [Schlesneria paludicola DSM
            18645]
          Length = 1283

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 188/610 (30%), Positives = 298/610 (48%), Gaps = 97/610 (15%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K+ A+AA++AKS FLA +SHEIRTP+NGV+GM ++L+ TELD  Q  +V+  Q SG+AL+
Sbjct: 588  KEAADAANLAKSSFLARMSHEIRTPLNGVIGMTELLLTTELDSRQHQFVKACQTSGRALL 647

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +L+N++LD +K+E+GKLE++   F+L  ++ +   +   ++ +KG+E       +  +  
Sbjct: 648  TLVNDILDLSKIEAGKLEMDVHDFDLEQLVHETTEMLWLRAHEKGLEFICDFDPQARQIY 707

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GD  R  QI+ NL+ N++KFTE G + + +     V D IE E                
Sbjct: 708  SGDGNRLGQILINLLNNAVKFTEHGEVILNI-----VCDRIENE---------------- 746

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                       +  L   V DTG GIP +  +R+F PF QV  S
Sbjct: 747  ---------------------------IATLRFIVRDTGIGIPQDRANRLFQPFSQVDSS 779

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+I K+LV  M G+IG  S    G+ F FT  F        EH      
Sbjct: 780  TTRKYGGTGLGLAICKHLVEMMGGQIGVESRVGAGTMFWFTVNF-----PVREHCELYSE 834

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSDQLQCLSQIASGSK 606
                ++    +G + L+VD       +   H +R G+Q      V D L+   +      
Sbjct: 835  RDRRAL----EGRRVLIVDDNETNLLIMDEHTRRWGMQSATAATVEDALRLFDEARESDA 890

Query: 607  IINMILVEQEVWEKDTSVSTLFVNNLRKLGC-GFQSKLFLLANSISSSRANTSTDGVSIP 665
              ++++ + ++ E++ S   L       LG  G      +L + +S+  A  S   + I 
Sbjct: 891  RFDLVISDYDMPERNGSDLAL------SLGTRGVMPPFIMLGSGLSNESAE-SLQAMGIC 943

Query: 666  SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--------KILIVDD 717
              + KP+ S+ L A++Q  +    + N  N   P M++RH  +          ++L+ +D
Sbjct: 944  QNLTKPVLSTQLYAAIQGVL----QQNRLNSSGPRMTMRHTKVSSSPGEHGDIEVLVAED 999

Query: 718  NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
            N +N       L  +G     V  G +A + +   HQF    MD QMP++DGFEAT+ IR
Sbjct: 1000 NAINRLYVTTLLAEFGCKFRTVTNGLEAIQAIR-EHQFSIVLMDCQMPQLDGFEATRCIR 1058

Query: 778  EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
             +E          E  IE        HVPI+A+TA+ ++   + CL +GMD Y+SKPFE 
Sbjct: 1059 TLE---------SEHRIEG-------HVPIIALTANAVKGDADRCLAAGMDHYLSKPFEP 1102

Query: 838  EQLYREVSRF 847
              LY  + ++
Sbjct: 1103 RSLYDVILKY 1112


>gi|440792679|gb|ELR13887.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acanthamoeba castellanii str. Neff]
          Length = 822

 Score =  280 bits (716), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 193/606 (31%), Positives = 303/606 (50%), Gaps = 92/606 (15%)

Query: 253 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
           A  A+ AK++F+A +SHEIRTPMNG++GM ++ +DT+L   Q+DY++   +S   L+++I
Sbjct: 244 ANEANRAKTEFMANMSHEIRTPMNGIIGMTELALDTQLSSEQRDYLKLVHSSALGLLTII 303

Query: 313 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
           N++LD +K+E+GKL++E +  +L   L D L   + K+ +KG+EL   I   +P+ L+GD
Sbjct: 304 NDILDFSKIEAGKLDIEHIDMSLHETLGDTLKALALKAHEKGIELLSDIEPTLPDKLVGD 363

Query: 373 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 432
           P R RQ+I NL+GN+IKFT KG + ++V + +   DS+ +             + V D  
Sbjct: 364 PVRLRQVIINLVGNAIKFTSKGEVVLSVQMQQRNADSVVLH------------FAVRD-- 409

Query: 433 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492
                                             TG GIP +  S IF  F Q   SI+R
Sbjct: 410 ----------------------------------TGIGIPADKLSVIFEAFSQADGSITR 435

Query: 493 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 552
            +GGTG+GL+IS  LV  M+G++   S+P+ GS F FTA FG G   S  H  QQ     
Sbjct: 436 KYGGTGLGLTISTRLVQLMQGKLTAESVPDKGSLFHFTATFGLGRDES-PHQKQQ----- 489

Query: 553 NSVSSEFQGMKALVVDPRPIRAKVSR---YHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
              ++     + L+VD      ++      H Q   + V+ V +  +  ++ +   K   
Sbjct: 490 ---TAILSSRRVLLVDANITSRRILSQMLLHWQMEPVLVDTVHEATELFAESSLAQKPFE 546

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP--SV 667
            +L+  ++ +    +  L V    +     +  + +L  S ++S+ +  +     P  + 
Sbjct: 547 YVLLVSQIPD---DLEGLTVAQFTENRIITKETMIILMLSPTTSKRDILSQHSCPPMCAY 603

Query: 668 IMKPLRSSMLAASL-----QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
           + KP+  S L  +L     +  + + + G+        +        +KIL+ +DN VN 
Sbjct: 604 LNKPVGQSELLYALLKPFEKEPIHMASTGSDTTAGGSPLLTVQGKPKQKILLAEDNVVNQ 663

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
           K+A     R+G AV   + G+KA E     H+FD   MD+QMPEM GFEAT  IRE+E  
Sbjct: 664 KLAI----RFGYAVTLADNGRKAVE-AARGHRFDLILMDVQMPEMGGFEATAKIRELEK- 717

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                R+G+            H PI+AMTA  IQ   E+CL  GMDGY+SKP  AE L +
Sbjct: 718 -----RQGK-----------GHTPIVAMTAHAIQGYREKCLEGGMDGYISKPIHAESLKQ 761

Query: 843 EVSRFF 848
            +  F 
Sbjct: 762 TIESFL 767


>gi|218779594|ref|YP_002430912.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760978|gb|ACL03444.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 1102

 Score =  280 bits (715), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 193/612 (31%), Positives = 306/612 (50%), Gaps = 89/612 (14%)

Query: 238 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           ++E    G  +L  +AE A++AK  FLA +SHEIRTPMNGV+GM ++LM+T L+  Q +Y
Sbjct: 407 QLENLVEGANQLAVEAELANMAKGVFLANMSHEIRTPMNGVIGMGELLMETRLNSEQTEY 466

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           V    +S +AL+ +IN++LD +K+++ KL+LE + FNLR  ++ V  + S  +++KGVE 
Sbjct: 467 VERINSSAQALLRVINDILDYSKIDADKLDLEVIEFNLRNTVEGVADVISVPAEEKGVEA 526

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
           A  I   VP  L GDPGR RQI+ NL GN++KFTEKG + + V L     DS + ET + 
Sbjct: 527 ACLIHHDVPLWLKGDPGRLRQILMNLSGNAVKFTEKGEVVIRVSL-----DSEDEETAV- 580

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                                     +   V D+G GIP + Q 
Sbjct: 581 ------------------------------------------IRFEVRDSGIGIPPDVQK 598

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
            +FTPF Q   S +R HGGTG+GL+ISK L   M GEIG  S    GSTF FTAV     
Sbjct: 599 TLFTPFTQADSSTTRKHGGTGLGLAISKKLSELMGGEIGLTSEEGKGSTFWFTAVLPKSR 658

Query: 538 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
               E  S +          + QG + LVVD       + R  ++    + E      Q 
Sbjct: 659 KAPREELSVK----------DLQGKRVLVVDDVETNRIILREMLRGWKSRPEEAPGGEQA 708

Query: 598 LSQIASG---SKIINMILVEQEVWEKD-TSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 653
           L+ +      +   ++ +++ ++ + D  ++ +  +++ R     F++   ++  S+   
Sbjct: 709 LAWLDKAYAENDPFDLAILDMQMPDMDGAALGSRILDDPR-----FKNITLVMLTSMGMR 763

Query: 654 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN---KGNIRNWELPSMSLRHLLLGR 710
               + + +   + + KP++ + L  +L   MG  +    G  R+   P  S     +  
Sbjct: 764 GDAQAMEKLGFHAYLTKPIKQAQLFDALSCTMGACSGEEAGGARSIVTPYTSEETQKI-- 821

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            IL+ DDN++N KVA+  L + G +VV    GK+A + ++   Q+D   MD QMP MDG 
Sbjct: 822 HILLADDNDINQKVASTNLIKMGHSVVVANNGKEALDAIVKGEQYDLILMDGQMPIMDGM 881

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
           EAT+ IR  E    ++++R                PI+A+TA  +    E+ + +GMD Y
Sbjct: 882 EATRKIRRFEA--AHKVKR---------------TPIVALTAHAMTGDREKFIEAGMDDY 924

Query: 831 VSKPFEAEQLYR 842
           ++KP + + L +
Sbjct: 925 LTKPLQRDALTK 936


>gi|46201520|ref|ZP_00054895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 1099

 Score =  279 bits (714), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 221/791 (27%), Positives = 362/791 (45%), Gaps = 130/791 (16%)

Query: 89  LTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQL 148
           +  P R L+ N   V      +K    + +   E IEA D       +IE L E+    L
Sbjct: 276 MDGPGRFLRVNGKPVFDPSGEFKGYRGTASDITEEIEAADRLKASQAEIERLAERNNSIL 335

Query: 149 AS-----------KQTIFVNVYDITNLS-HPISMYGSNV---------SDDGLWLVSTLN 187
            S            +  FVN      L   P  + GS++         + + L+ +  L 
Sbjct: 336 ESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELVGSDILPLMALDMETAESLYQI-LLR 394

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIF---QATVNRIAKVEEDYH 244
             D  R      + +  +P P+  I++ +  +   + VG +      T  R+ + +    
Sbjct: 395 LADSIRDDTASFKRRDGSPLPVEYIASPV--MDKGNQVGVVLGFRDITQRRLVERQ---- 448

Query: 245 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            + E K+ AEA +  KS+FLAT+SHEIRTPMNGV+GM  +L+DT+L   Q+ +  T + S
Sbjct: 449 -LREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTKLTEEQRHFAETIRDS 507

Query: 305 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
           G++L+++IN++LD +K+E+GKL+L+   F L  +++ V+ + + ++  KG+E+A  I  R
Sbjct: 508 GESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPR 567

Query: 365 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
           +   +  DPGR RQ++ NL GN++KFTEKG + + V L+E                    
Sbjct: 568 LRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVTLLE-------------------- 607

Query: 425 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                     +  +  +++    V DTG GIP EAQ R+F+ FM
Sbjct: 608 --------------------------RPGAQPMVHF--DVRDTGIGIPPEAQGRLFSMFM 639

Query: 485 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
           QV  S +R +GGTG+GL+I + L   M GE+G  S P  GS F          S   E  
Sbjct: 640 QVDASTARRYGGTGLGLAICRRLAELMGGEVGLESQPGKGSRFWM--------SVPMELL 691

Query: 545 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
           + Q    P+       G + LVVD  P+   V    ++  G++V    D    + ++   
Sbjct: 692 APQSAAPPD-----LTGHRVLVVDDNPVNCDVIERQLRAFGVEVHACLDAGSGMGELTRA 746

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG-VS 663
           + +     V     +      +  V  +R +     S++ + +   S        DG  +
Sbjct: 747 AAMGTPWEVAVIDSQMPVVTGSEMVRMMRAIPMLGGSRIIVTS---SQGMPAEQQDGQPA 803

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGN-----KGNIRNWELPSMSLRHLLLGRKILIVDDN 718
           I + + KPLR S L  ++ R +G+                P  + + L    +IL+ +DN
Sbjct: 804 IDAFLHKPLRQSTLLDTIGRVLGLSGPEEQPAAPAEEHNAPDSTAKRL----RILVAEDN 859

Query: 719 NVNLKVAAAGLKRYGAAVVCVERGKKATEL--LMPPHQFDACFMDIQMPEMDGFEATKII 776
            VN +VA   L++ G  V  V  G +A E   L+P   +D   MD+QMPEMDG EAT+ I
Sbjct: 860 PVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLP---YDVVLMDVQMPEMDGLEATRAI 916

Query: 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
           R +                     +   +PI+AMTA+ ++   + C  +GMDGY+SKP +
Sbjct: 917 RSLAS-------------------AAARIPIVAMTANAMRGDDQMCFDAGMDGYISKPID 957

Query: 837 AEQLYREVSRF 847
             +L   ++++
Sbjct: 958 RHKLAEALAKY 968


>gi|119944738|ref|YP_942418.1| sensor histidine kinase [Psychromonas ingrahamii 37]
 gi|119863342|gb|ABM02819.1| amino acid-binding domain sensor hybrid histidine kinase
            [Psychromonas ingrahamii 37]
          Length = 1574

 Score =  279 bits (714), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 193/607 (31%), Positives = 298/607 (49%), Gaps = 77/607 (12%)

Query: 249  LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 308
            + +    A++AKS+FLA +SHEIRTPMN ++G+ ++ ++ ++    +DY+    +SG +L
Sbjct: 816  MNRAIHKANMAKSEFLANMSHEIRTPMNAIIGLSELSLNQDMTPQLRDYLSKIHSSGNSL 875

Query: 309  VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 368
            + +IN +LD +K+E+GKL+LE + F+L  +LD++ + F     +K +EL   I   VP  
Sbjct: 876  LGIINGILDFSKIEAGKLDLENIEFSLLDVLDNISNTFYFTLAEKNIELITSIDPDVPWH 935

Query: 369  LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 428
            L+GDP R  QI TNL+ N+IKFT KG I +    +E+  D  +V                
Sbjct: 936  LVGDPLRTGQIFTNLINNAIKFTNKGQITICASCLEK--DDKQVR--------------- 978

Query: 429  ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 488
                                           L+ SV DTG GIP +  + +F PF Q   
Sbjct: 979  -------------------------------LLFSVADTGLGIPKDRIASLFEPFAQADG 1007

Query: 489  SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 548
            S SR HGGTG+GLSI K LV  M G I   S    GS F+F   F  G S SNE N   +
Sbjct: 1008 STSRKHGGTGLGLSICKRLVEEMNGRIWIESEQGKGSVFSFELEF--GVSQSNEDNKLLL 1065

Query: 549  NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--ASGSK 606
                       +G+ ALVVD  P+  KV    +  L   V       + LS +  A G+ 
Sbjct: 1066 -------PPALRGLHALVVDDNPVTLKVIEKMLIHLKFNVTTTESGEKALSVLENALGNN 1118

Query: 607  IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
             +++ +++   W+            +++     +  + L++ S         +  V   S
Sbjct: 1119 TVDLAIID---WQMGGIDGIETAKKIKENPSIPKMPMVLMSGSDRDGLLGQKSKQVGFDS 1175

Query: 667  VIMKPLRSSMLAASLQRAMGVG---NKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 723
             ++KP+  S+L  ++    G     NK   R  ++ S  L   + G KIL+VDDN +N +
Sbjct: 1176 FVLKPVNRSILVETILTVFGYRDDINKNLKRKIKVDSARL-DAIGGAKILLVDDNEINRQ 1234

Query: 724  VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
            VA   L+  G  V     G++A    +  H FDA  MD+QMPE+DG+EAT+ IR      
Sbjct: 1235 VAREFLENAGLLVTTATNGREAVN-SVKSHVFDAVLMDVQMPEIDGYEATQKIR------ 1287

Query: 784  NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
              R  +  V ++  +      +PI+AMTA  ++   E CL +GM+ YV+KP +  QL+  
Sbjct: 1288 --RWEKTRVDLQPTDGSP--VLPIIAMTAHAMEGDKERCLAAGMNDYVTKPIDTRQLFEA 1343

Query: 844  VSRFFPP 850
            +SR+  P
Sbjct: 1344 LSRWIKP 1350


>gi|322421925|ref|YP_004201148.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320128312|gb|ADW15872.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 951

 Score =  279 bits (714), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 189/609 (31%), Positives = 294/609 (48%), Gaps = 95/609 (15%)

Query: 251 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 310
           + A+AA  AKSQFLA +SHEIRTPMNG+LGM ++LM T LD  Q+ +V + + SG+AL+S
Sbjct: 273 EAAQAASRAKSQFLANMSHEIRTPMNGMLGMAELLMATRLDEQQRRFVSSVRRSGEALLS 332

Query: 311 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 370
           +IN++LD +K+E+GKLELE  +FNL   + DV+ L +  +  KG+E+A  + + VP  L+
Sbjct: 333 IINDILDFSKIEAGKLELEETAFNLEDTVADVIELLAETAHRKGLEIAALVENDVPPVLL 392

Query: 371 GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 430
           GD  R  Q++ NL+GN++KFT++G + ++  L EE  + + V                  
Sbjct: 393 GDQVRVHQVLMNLVGNAVKFTDQGEVIISGMLKEEHKEEVTV------------------ 434

Query: 431 RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 490
                                         ++ V DTG GI  E + RIF  F Q   S 
Sbjct: 435 ------------------------------LIRVSDTGIGISDEVKGRIFDGFSQADNST 464

Query: 491 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 550
           +R +GGTG+GL+I++ LV  M GEIG  S    GSTF FT               ++ + 
Sbjct: 465 TRKYGGTGLGLTIARQLVELMGGEIGVESEVGRGSTFWFTLKL-----------HKEASE 513

Query: 551 QPNSVSS-EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK--- 606
           +P S  +    G +AL+VD       +  + +   G+  ++  +    L  +   ++   
Sbjct: 514 RPRSGEAVSLAGYRALLVDDNSTNLSIMHHELHAWGMTADMADNAATALGLMRHAARAES 573

Query: 607 -----IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
                I++M++ E    E   ++         K          L+  S+           
Sbjct: 574 PYDLAILDMLMPEMNGIELARAI---------KANPDLAQTRLLMVTSVGQYGDEAEAVK 624

Query: 662 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 721
             I   I KP+R S L +++   +GVG    ++  +  S     + L  ++L+V+DN VN
Sbjct: 625 AGIGCYISKPVRQSRLYSAIIDLLGVGMSSAVQPQQ--SAEPGPVRLSAEVLLVEDNPVN 682

Query: 722 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
             VA A L+  G  V     G +A + +M   +FD  FMD QMP MDG+ AT+ IR+ E 
Sbjct: 683 QDVATAMLECSGCRVSVANNGAEALD-VMTRRRFDLIFMDCQMPVMDGYAATRAIRQCEG 741

Query: 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
           N                   +    I+A+TA  ++   EEC  +GMD Y++KPF   QL 
Sbjct: 742 N---------------SQAGSGRRTIIALTAHAMRGDREECFAAGMDDYLTKPFTQAQLV 786

Query: 842 REVSRFFPP 850
             + R+  P
Sbjct: 787 AVLQRWLSP 795


>gi|88813512|ref|ZP_01128746.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Nitrococcus mobilis Nb-231]
 gi|88789225|gb|EAR20358.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Nitrococcus mobilis Nb-231]
          Length = 715

 Score =  279 bits (714), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 194/611 (31%), Positives = 305/611 (49%), Gaps = 89/611 (14%)

Query: 235 RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQ 294
           RI  +++    +   K+ A+AA VAK  FLA +SHEIRTPMN ++GM ++++DT+L  TQ
Sbjct: 39  RIQDLKKAGEELRHAKEAAQAASVAKGNFLANMSHEIRTPMNAIIGMTELVLDTDLTDTQ 98

Query: 295 QDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKG 354
           ++Y+   + +G +L+SL+N++LD +K+E+GKLELE+  F LR  L D +   + ++  KG
Sbjct: 99  REYLAMVREAGNSLLSLLNDILDFSKIEAGKLELESHVFGLRERLGDAMKSLAFRAHGKG 158

Query: 355 VELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVET 414
           +ELA ++   VP+ L+GD  R RQI+ NL+GN+IKFT +G + + V              
Sbjct: 159 IELACHVHPEVPDALLGDASRLRQIVVNLVGNAIKFTTQGEVVLDV-------------- 204

Query: 415 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLE 474
                                              ++S + +  NL  +V DTG GIP +
Sbjct: 205 ----------------------------------AYESPTNNAANLHFTVTDTGIGIPTD 230

Query: 475 AQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534
               IF  F Q   S +R  GGTG+GL+IS  LV  M G I   S    GS F FT  F 
Sbjct: 231 KLESIFDSFEQADMSTTRQFGGTGLGLAISSRLVKLMGGRIWAESELGCGSDFHFTMKFS 290

Query: 535 NGSSTSNEHNSQQMNNQPNSVSSEF-QGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEV 590
             +    E        QP  + + F   ++AL+VD       +    +   G+Q   V  
Sbjct: 291 LAAERPAE-------AQP--LEAVFPDNVRALIVDDNATNRLILNEMLGNWGMQATSVAA 341

Query: 591 VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           V++ L  L    +  +   +++ +  +  +D          +++ G     +L +L  S 
Sbjct: 342 VAEGLAALRTAYAARRPFRLVITDCHMPGED---GFDLAEKIKQDGQLSDIQLVML-TSG 397

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
           S        + + + + ++KP++ S L  ++  A+G+     +   E P   ++ L   R
Sbjct: 398 SEPGDIAHCEQLGVVAHLLKPVKQSELFDAIGSALGL----QVAEEEAPLDEVQQLKALR 453

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            IL+ +D+ VN K+A A LK++G  VV    GK+A  +     +FD   MD+QMPEMDG 
Sbjct: 454 -ILLAEDSIVNQKLALALLKKHGHDVVVANNGKEAVAVF-DRDRFDLVLMDVQMPEMDGL 511

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
           EAT  +R  E N                  S+ HVPI+A+TA  ++   E+CL +GMDGY
Sbjct: 512 EATAAVRAKEAN------------------SDRHVPIIALTAHAMKGDREQCLEAGMDGY 553

Query: 831 VSKPFEAEQLY 841
           VSKP  A +L+
Sbjct: 554 VSKPIRAPELF 564


>gi|408418332|ref|YP_006759746.1| two component system sensor histidine kinase, barA-like
           [Desulfobacula toluolica Tol2]
 gi|405105545|emb|CCK79042.1| two component system sensor histidine kinase, barA-like
           [Desulfobacula toluolica Tol2]
          Length = 1144

 Score =  278 bits (712), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 190/610 (31%), Positives = 300/610 (49%), Gaps = 85/610 (13%)

Query: 253 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
           AE A  +KS+FLA +SHEIRTPMN ++G+  +   T++   Q DY+   +ASG +L+ +I
Sbjct: 387 AEEASRSKSEFLANMSHEIRTPMNAIIGLAHLAQKTDMTPKQNDYLNKIEASGLSLLGII 446

Query: 313 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
           N++LD +K+E+ KL +E++ F+L+A+LD+V++L + K+++KG+EL   +S  VP  L+GD
Sbjct: 447 NDILDFSKIEANKLSIESIEFDLQAVLDNVVNLINIKAEEKGLELLFDVSRDVPLGLVGD 506

Query: 373 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 432
           P R  QI+ NL GNSIKFT  G I + V L+ E                           
Sbjct: 507 PLRLGQILINLAGNSIKFTLNGQILIKVALLNE--------------------------- 539

Query: 433 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492
                           P K+ +     L  SV D+G G+  +  S++F  F Q   S +R
Sbjct: 540 ---------------DPEKARA----RLQFSVSDSGIGMTQDQISKLFQSFSQADGSTTR 580

Query: 493 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 552
            +GGTG+GL+ISK LVG M GEI   SI   GSTFTFTA FG  +         Q    P
Sbjct: 581 QYGGTGLGLTISKQLVGMMGGEISVKSIYGEGSTFTFTAEFGVQT---------QKPFIP 631

Query: 553 NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMIL 612
                E  GM+ L+VD      ++ R  ++     V  V      +S++ + SK     L
Sbjct: 632 MISPGELHGMRVLIVDDNEKSREILRDLMKEFHFNVSEVPSGEAAISELKTSSKKAPYDL 691

Query: 613 VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL 672
           V  + W+ +          +++     +    L+  +       +    V +   ++KP+
Sbjct: 692 VLMD-WQMNGMDGIETARRIKEDSGIAKIPAILMVTAFGREEVMSQAQTVGLDGFLIKPI 750

Query: 673 RSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL-----LLGRKILIVDDNNVNLKVAAA 727
             S+L  ++    G   + N+ + +L S     +     + G +IL+V+DN +N +VA  
Sbjct: 751 NRSLLFDAIMDLFG---RSNLPDQDLVSRETTRINGIDYVCGARILLVEDNKINQQVATE 807

Query: 728 GLKRYGAAVVCVERGKKATELLMPPHQ-FDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
            L+  G  V     G +A  +L      FD   MDIQMP MDGFE T++IR         
Sbjct: 808 LLESAGLIVTVAGDGLEALAVLKDTDSVFDGILMDIQMPNMDGFETTRMIR--------- 858

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
                      +N +   +PI+AMTA+ +    E+CL +GM+ ++ KP E + L++ + +
Sbjct: 859 -----------KNPALSELPIIAMTANAMAGDREKCLDAGMNDHIPKPIEPDILFKTLIK 907

Query: 847 FFPPIPDRSP 856
           + P    R P
Sbjct: 908 WLPETAPRLP 917


>gi|254417240|ref|ZP_05030985.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
 gi|196176046|gb|EDX71065.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
          Length = 1359

 Score =  278 bits (711), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 226/737 (30%), Positives = 341/737 (46%), Gaps = 146/737 (19%)

Query: 136  DIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKH 195
            D+  ++E + H LA +  I+ N++ I    H    Y        LW+ +           
Sbjct: 644  DLHQVIEDINHHLAGQTQIYENIHRI---KHRDGHY--------LWIAT----------- 681

Query: 196  EMRC-RFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAE 254
            + RC R +   P+                LVG I   T  +IA+ +     +   K++AE
Sbjct: 682  KGRCIRDRDGNPY---------------RLVGTITDITDKKIAQEQ-----LKAAKEEAE 721

Query: 255  AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINE 314
             A+  KS FLA +SHEIRTPMN V+GM  +L+DT+L   Q ++V   + S  AL+++IN+
Sbjct: 722  TANRTKSDFLAMMSHEIRTPMNAVIGMTSLLLDTQLTAQQGEFVDIIRNSSDALLTIIND 781

Query: 315  VLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG 374
            +LD +K+ESGKL LE   F+LRA +++ L L S K++DKG+ELA  +  ++PE+++GD  
Sbjct: 782  ILDFSKIESGKLNLEEQPFDLRACIEESLELLSSKARDKGIELAYLMDSQIPESIVGDVT 841

Query: 375  RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHS 434
            R RQI+ NL+ N++KFTE G + ++V                                  
Sbjct: 842  RLRQILVNLVSNAVKFTETGDVVISV---------------------------------- 867

Query: 435  WKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 494
                         +P    S + I L  +V DTG GI      R+F PF QV  S +R +
Sbjct: 868  -------------TPTAEISEEQIRLQFAVRDTGIGISRTRMDRLFKPFSQVDASTTRQY 914

Query: 495  GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNS 554
            GGTG+GL+IS+ L   M G++   S   +GSTF FT +    SS S   N +Q+      
Sbjct: 915  GGTGLGLAISQRLSELMGGKMWVESEEGVGSTFYFTVIATPVSSDSEPDNREQV------ 968

Query: 555  VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVE 614
                    + L+V+      ++     Q   IQVE  +   + L  + +G +    IL  
Sbjct: 969  ----LSDKRLLIVEDNSATRQMLTEQAQSFEIQVEATASTTEALGWLKTGKRFDIAILAS 1024

Query: 615  Q----EVWEKDTSVSTL-FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
            Q    E W   T +       NL  +  G      L+    + S         +I   + 
Sbjct: 1025 QILQMENWSLITQIRQHPHCQNLPIIILG------LIGQVETHSDTGLPNPSRAIAGYLH 1078

Query: 670  KPLRSS----MLAASLQRAMGVGNKGNIRNWEL-PSMSLRHLLLGRKILIVDDNNVNLKV 724
            KP++ S    +L   L + + V  K    + +  P+ + +  L   KIL+ +DN VN KV
Sbjct: 1079 KPIKQSQLYNILVNILTQEVSVPRKTRSHSSKYDPTFAHKFPL---KILLAEDNVVNQKV 1135

Query: 725  AAAGLKRYGAAVVCVERGKKATELLMPPHQ--FDACFMDIQMPEMDGFEATKIIREMEHN 782
            A   LKR G     V  G    E+L   H+  +D   MDIQMPEMDG  AT+ I + E +
Sbjct: 1136 AVNMLKRLGYRPDSVANG---LEVLQALHRQSYDVVLMDIQMPEMDGLTATQQICQ-EFS 1191

Query: 783  FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
             + R R                  I+AMTA+ +Q   EECL +GMD Y+SKP   + L +
Sbjct: 1192 GSARPR------------------IIAMTANAMQGDREECLAAGMDDYMSKPIHVDVLKQ 1233

Query: 843  EVSRFFPPI---PDRSP 856
             +S+  PP    P + P
Sbjct: 1234 VLSQCQPPTTEQPTKQP 1250


>gi|298529159|ref|ZP_07016562.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298510595|gb|EFI34498.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1547

 Score =  278 bits (710), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 198/627 (31%), Positives = 312/627 (49%), Gaps = 88/627 (14%)

Query: 252  KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
            +A+AA  AKS+FLA +SHEIRTPMNGV+GM  +L++T+L+ TQ+ Y  T ++SG+AL++L
Sbjct: 834  QADAASRAKSEFLANMSHEIRTPMNGVIGMTGLLLETDLNETQRRYAETVRSSGQALLAL 893

Query: 312  INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
            +N++LD +K+ESGKLELEA++F+LR  LD+  S+ + K+++KG+E        VP+ LIG
Sbjct: 894  LNDILDFSKIESGKLELEALNFDLRDTLDNFASMMAFKAEEKGLEFICSADPDVPDNLIG 953

Query: 372  DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
            DPGR RQI+TNL+GN++KFTE+G + V V + E  V S E                    
Sbjct: 954  DPGRIRQILTNLVGNAVKFTERGEVVVRVSIQESGVRSQE-------------------- 993

Query: 432  CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
                                  S +   L  SV DTG GIP +    +F  F QV  SI+
Sbjct: 994  ----------------------SQEFCMLHFSVRDTGIGIPADKVGDLFQSFSQVDASIT 1031

Query: 492  RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 551
            R  GGTG+GL+ISK L   M G++G  S+   G+TF FT       +   E         
Sbjct: 1032 RKFGGTGLGLAISKQLAEMMGGDVGVDSVEGQGTTFWFTIRLALAGTAEAEV-------- 1083

Query: 552  PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---SKII 608
               V ++   ++AL+VD      ++    +   G++ +   D    L ++ +        
Sbjct: 1084 --PVPADLLDVRALIVDDNATNREILMTRLLGWGMRPDEAKDGPTALGRLYTALAEDDPY 1141

Query: 609  NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 668
            ++ +++ ++   D       +   +KL      +L +++++     A    D +   + +
Sbjct: 1142 HLAIIDMQMPGMDGEFLGRTIRADQKLQ---DVRLVMMSSAGMQGDARRMKD-IWFAAFL 1197

Query: 669  MKPLRSSMLAASLQRAMGVGNKGNI----RNWELPSMSLRHLLLGRK--ILIVDDNNVNL 722
             KPLR   L   L   M      ++       E  S S +     RK  IL+ +DN  N 
Sbjct: 1198 AKPLRHDELFDCLSLVMAGDEPQDLVTRHSAREEKSRSGKIDFSDRKARILLAEDNITNQ 1257

Query: 723  KVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATKIIREME 780
            +VA A LK +G +   V  G +A + L  +P   +D   MD+QM EMDG  AT+ IR  E
Sbjct: 1258 QVALAMLKNFGLSADAVANGLEAIKALKTVP---YDLVLMDVQMLEMDGLAATRRIRAAE 1314

Query: 781  -HNFNNRIRRGEVSIEAYEN-----------------VSNFHVPILAMTADVIQATYEEC 822
                   +R   +  E+  +                 +  F +PI+AMTA  ++   E C
Sbjct: 1315 IRGRELEVRDQRLKSESQNSSIPESLNPLIPQSLNSRIPEFRIPIIAMTAHAMRGDRERC 1374

Query: 823  LRSGMDGYVSKPFEAEQLYREVSRFFP 849
            + +GMD Y++KP E  +L + + ++ P
Sbjct: 1375 MEAGMDDYLAKPVEPGRLSQVLEKWLP 1401


>gi|406895332|gb|EKD39927.1| hypothetical protein ACD_75C00243G0001 [uncultured bacterium]
          Length = 713

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 197/629 (31%), Positives = 307/629 (48%), Gaps = 109/629 (17%)

Query: 237 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 296
           +++E     + + KK AE A+VAKSQFLA++SHEIRTPMNGV+G  DML+ TELD  Q+D
Sbjct: 173 SEIENQTQELRKSKKAAEEANVAKSQFLASMSHEIRTPMNGVIGFTDMLLATELDEEQKD 232

Query: 297 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 356
           +  T + SG+AL+ LIN++LD +KVE+G++ LE + F+      DV  L   +   K +E
Sbjct: 233 FALTIKRSGEALLGLINDILDFSKVEAGQMSLEYIDFDPEITAHDVCELIRPRVTGKPIE 292

Query: 357 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 416
           +   I D +P  + GDPGRFRQ++ NL+GN+ KFTE+G + +++ ++ E  ++I   T L
Sbjct: 293 VLCRIEDNLPANIKGDPGRFRQVLVNLLGNAAKFTEQGELELSLEVMAETEETI---TLL 349

Query: 417 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476
           +  ++T  G P       ++ FK    DGST                             
Sbjct: 350 AKIRDTGIGIPEDKFSTIFEAFK--QADGST----------------------------- 378

Query: 477 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536
                         +R +GGTG+GLSI + + G M G I   S    G+TF FT+V    
Sbjct: 379 --------------TRKYGGTGLGLSICRRIAGLMGGRIWVESTLGRGTTFFFTSVMKKS 424

Query: 537 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
           +S + +             +    G+K LVVD      ++ R  + + G++V  + D   
Sbjct: 425 TSCTAQRPP----------AENLGGVKILVVDDNRANNEILRGILGKAGMEVVTLLDSTT 474

Query: 597 CLSQIASGSK--------IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 648
            ++++    K        I+++++     ++  T + T  + N           + LLA 
Sbjct: 475 AVAELIRAEKENRPFQLAILDLLMPLVSGYDLATGIRTSSLAN---------PSIPLLAY 525

Query: 649 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP-------SM 701
           + S+ R           + + KP R S+L  +L R +G GN       E+P         
Sbjct: 526 TSSTERVAQKCKEAGFTAFLTKPARRSLLLRTLSRILGPGNGAP----EMPEEKKFVTQY 581

Query: 702 SLRHLLLGR-KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM-PPHQFDACF 759
           S+R  L    +IL+ +DN VN K+A   L + G  V  V  GK A E     P  FD   
Sbjct: 582 SVREELKQSIRILLAEDNPVNQKLAMMMLSKAGYQVTVVPNGKAAVETFTGTPDGFDTIL 641

Query: 760 MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
           MDIQMPEMDG+EAT+ IR          R+G   I           PI+AMTA+ ++   
Sbjct: 642 MDIQMPEMDGYEATRQIR----------RQGFREI-----------PIIAMTANAMKGDK 680

Query: 820 EECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           E C  +GM+ Y+ KP + E +++ + ++ 
Sbjct: 681 ELCFAAGMNDYIMKPIKREIVFQILEKWL 709



 Score = 47.4 bits (111), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 24/148 (16%)

Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ----FDACFMDI 762
           L G KIL+VDDN  N ++    L + G  VV +     A   L+   +    F    +D+
Sbjct: 437 LGGVKILVVDDNRANNEILRGILGKAGMEVVTLLDSTTAVAELIRAEKENRPFQLAILDL 496

Query: 763 QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 822
            MP + G++    IR                     +++N  +P+LA T+   +   ++C
Sbjct: 497 LMPLVSGYDLATGIR-------------------TSSLANPSIPLLAYTSST-ERVAQKC 536

Query: 823 LRSGMDGYVSKPFEAEQLYREVSRFFPP 850
             +G   +++KP     L R +SR   P
Sbjct: 537 KEAGFTAFLTKPARRSLLLRTLSRILGP 564


>gi|333983217|ref|YP_004512427.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
 gi|333807258|gb|AEF99927.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
          Length = 926

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 193/600 (32%), Positives = 304/600 (50%), Gaps = 76/600 (12%)

Query: 252 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
           +A+AA+ AKSQFLA +SHEIRTPMNGVLGM ++L+ T L   Q+ +      SG++L+S+
Sbjct: 267 EAQAANAAKSQFLANMSHEIRTPMNGVLGMTELLLSTSLTPEQKRFAENVHKSGESLLSI 326

Query: 312 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
           IN++LD +K+E+G L+LE+V F L   ++DV+ LFS ++ +K +EL   I+  VPE +IG
Sbjct: 327 INDILDFSKIEAGHLKLESVDFCLYQTVEDVIELFSERAYNKHLELNYRIAGDVPENVIG 386

Query: 372 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
           DP R RQI++NL+ N+IKFT +G+I V V L +   ++  +  E               R
Sbjct: 387 DPTRLRQILSNLLSNAIKFTSQGNITVDVGLTDTPNNNRIINDE---------------R 431

Query: 432 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
            +  +                          +V DTG GI       +F PF Q   S +
Sbjct: 432 AYGVR-------------------------FTVSDTGIGISKGVIPNLFQPFSQADSSTT 466

Query: 492 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT-AVFGNGSSTSNEHNSQQMNN 550
           R +GGTG+GLSI K LV  M G+I   +    G+TFT    +F          +S++   
Sbjct: 467 RKYGGTGLGLSICKQLVNMMSGDIEVHARIGEGTTFTVNLPLFA---------SSKEFKP 517

Query: 551 QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKI 607
              S S+   G+K L++   P    + + H    G+ V+        L  L + A+    
Sbjct: 518 ASLSESAGLAGLKLLIIQTTPAYPNILQNHCLSWGMSVDTADSATIALDMLKKSATTPHP 577

Query: 608 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
            ++ +++  V + D     L +  L     G  +++ L+    +  + + +     I ++
Sbjct: 578 YDLAIIDMPVADMD----GLELGRLIISAPGL-ARIPLIMLPSAPYKDDVAAKRAGITAL 632

Query: 668 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAA 727
           + KP+R + L  SL  A+G   +       L   +     L   IL+V+DN +N  VA A
Sbjct: 633 VKKPVRKADLYQSLLNALGASIRLPHSETRLDMPATAAAQLSAHILLVEDNRINQAVAQA 692

Query: 728 GLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787
            L  +G  V   E G +A + +     +D   MD  MP+MDG+E T  IR          
Sbjct: 693 MLNSFGCTVDIAENGLEALQAI-DRKAYDLVLMDCMMPKMDGYETTAEIR---------- 741

Query: 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
           RR     +  +N+S F  PI+A+TA+ I+   E+CL +GMD Y++KPFE+  LY+ +SR+
Sbjct: 742 RR-----QNCDNLSRF--PIIALTANAIEGDREKCLLAGMDDYLTKPFESAALYKMISRW 794


>gi|212558640|gb|ACJ31094.1| Sensory box histidine kinase/response regulator [Shewanella
            piezotolerans WP3]
          Length = 1771

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 186/603 (30%), Positives = 295/603 (48%), Gaps = 111/603 (18%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + + K  A+AA  AKS FLA +SHEIRTPMN ++GM  + + TELD  QQ+YV+    + 
Sbjct: 1034 LKQAKDSADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQQNYVQKIDRAS 1093

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            K+L+ +IN++LD +K+E+GKL++E+VSF L  +L+D+  +FS K+ DK +EL   ++  +
Sbjct: 1094 KSLLGIINDILDFSKIEAGKLDIESVSFQLETMLEDLSDMFSVKAADKQLELLFAVAPNI 1153

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  L GDP R  Q++ NLM N++KFT++G + +++  +E V D+                
Sbjct: 1154 PRQLEGDPLRLSQVLINLMNNAVKFTDQGEVLLSISQLERVDDA---------------- 1197

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                            I L  SV D G G+  + ++++F  F Q
Sbjct: 1198 --------------------------------ITLRFSVRDNGIGLTEDQRNKLFKSFSQ 1225

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               S +R +GGTG+GL+I K LV  M GEIG  S    GSTF FT  F            
Sbjct: 1226 ADTSTTRKYGGTGLGLAICKQLVELMGGEIGVESQFGNGSTFFFTVKF------------ 1273

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
            +  +N+      E +GM+ LV D       + R  ++ +G +V+ V    Q + +     
Sbjct: 1274 KVADNKLIKAGQELEGMRILVADDNATARDILRTTLESMGFEVDTVKSGAQAVERC---- 1329

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS-------ISSSRANTS 658
                          K T      ++ L     G ++   ++ANS       I S+ ANT 
Sbjct: 1330 --------------KTTQYPVALIDWLMPEMNGLETSAAIIANSETPPKILIVSAHANTE 1375

Query: 659  ----TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP-SMSLRHLLLGRKIL 713
                 +G  I   I KP+ +S L   +  ++G      +R   +  +  L   L G++IL
Sbjct: 1376 LTDHIEGSGIAGYITKPISASRLLDGIMSSLGKNGAIPVRRTGVEVNQKLLTQLKGKRIL 1435

Query: 714  IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
            +V+DN +N +VA   L++ G  +   + G+ A E L     FD   MD QMP MDG++AT
Sbjct: 1436 LVEDNEMNQEVATEFLEQVGITLSIADNGQIALEKL-ATQTFDLVLMDCQMPVMDGYQAT 1494

Query: 774  KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
            + +R++           E+S           +P++AMTA+ +    E CLR GM+ +++K
Sbjct: 1495 QALRKIP----------ELS----------DLPVIAMTANAMAGDKEMCLRVGMNDHIAK 1534

Query: 834  PFE 836
            P E
Sbjct: 1535 PIE 1537


>gi|343511277|ref|ZP_08748451.1| PAS domain-containing protein [Vibrio scophthalmi LMG 19158]
 gi|342798610|gb|EGU34209.1| PAS domain-containing protein [Vibrio scophthalmi LMG 19158]
          Length = 1816

 Score =  277 bits (709), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 196/639 (30%), Positives = 307/639 (48%), Gaps = 104/639 (16%)

Query: 227  HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM 286
             +F   V    + +E    +M  K+KAE A  AKS FLA +SHEIRTPMN ++GM  + M
Sbjct: 960  QLFTGIVRDATERKEAERELMLAKQKAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLAM 1019

Query: 287  DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 346
             T+L+  Q DYV   Q S ++L+ +IN++LD +K+E+GKL+LE   F+L + +D+++ + 
Sbjct: 1020 QTDLNKKQADYVNKIQTSAESLLGIINDILDFSKIEAGKLDLEQTEFDLESTIDNLVQVV 1079

Query: 347  SGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 406
            S ++Q+K +EL V +  ++P  LIGDP R  QI+ NL  N+IKFT++G I V   L+E+ 
Sbjct: 1080 SQRTQEKDLELLVDLDPQLPTHLIGDPLRLGQILLNLANNAIKFTDQGEIIVKAELIEQS 1139

Query: 407  VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 466
             D +E              + V+D                                    
Sbjct: 1140 DDKLEAR------------FSVSD------------------------------------ 1151

Query: 467  TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
            TG G+  E  +R+F  F Q   S +R +GGTG+GL+ISK L   M+G I   S    GST
Sbjct: 1152 TGIGMTKEQMARLFQSFSQADASTTRKYGGTGLGLTISKTLAEMMEGSIWVESESGQGST 1211

Query: 527  FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
            F FTA FG  S         ++  QP       + +  L+VD      ++     Q L  
Sbjct: 1212 FFFTAQFGLSS---------EIPQQPVLAPESMKEVSVLIVDDSVAAREILFSLCQSLKF 1262

Query: 587  QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL--- 643
              +V S   + L +I            E      D  +S   +  +  +  G Q +L   
Sbjct: 1263 NADVASSGAEALEKIRHA---------ENNEQHFDVILSDWKMPQMDGIALGQQIELMHQ 1313

Query: 644  ---------FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM---GVGNKG 691
                     F++  +        +  GV+I + + KP+ SS L  +L R M   G+ NK 
Sbjct: 1314 SKEIATLPHFVMVTAYDKDDMLANRQGVNIVASMTKPVSSSTLLDTLSRVMTKEGITNKT 1373

Query: 692  NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 751
            N  N +L + S+   + G +IL+V+DN +N ++A   L+  G  V     G++A +L+  
Sbjct: 1374 NTSN-KLDT-SIAQGIAGARILLVEDNAINQEIATELLQMVGMDVTTANNGQEAVDLV-G 1430

Query: 752  PHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMT 811
               FD   MDIQMP MDG++AT+ IR                   Y++     +PI+AMT
Sbjct: 1431 SQDFDLVLMDIQMPVMDGYQATQAIRNTGQ---------------YDD-----LPIIAMT 1470

Query: 812  ADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
            A+ +    E+CL +GM+ ++ KP    Q+++ +  +  P
Sbjct: 1471 ANAMSGDKEKCLAAGMNDHLPKPINPNQVFQALVDWIEP 1509


>gi|301064957|ref|ZP_07205311.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300440940|gb|EFK05351.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 914

 Score =  277 bits (709), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 187/617 (30%), Positives = 306/617 (49%), Gaps = 101/617 (16%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           +++ +++AEAA +AK QFLA +SHEIRTPMN V+GM ++L+ T+LD  QQ+YV   +++ 
Sbjct: 250 LVKARREAEAASMAKGQFLANMSHEIRTPMNAVIGMTELLLGTDLDTEQQEYVEIVKSAA 309

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
             L++LIN++LD +K+ESGKLE E ++F+LR +++ V  + +  +Q K +E   ++    
Sbjct: 310 NGLLTLINDILDFSKIESGKLEFEKIAFDLRYVIEGVGEMMAPNAQTKQLEFTCFVDPDC 369

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
              L+GDP R RQ++ NL GN++KFTEKG++ +   ++ E                    
Sbjct: 370 EVRLLGDPERLRQVLVNLTGNAVKFTEKGNVDIHAAMIGE-------------------- 409

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                            +DG           ++ +  ++ DTG GIP + Q  +F  F Q
Sbjct: 410 -----------------EDG-----------MVLIRFAISDTGMGIPKDRQEAVFNSFTQ 441

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
           V  S +R   GTG+GLSISK LV  M G +G  S   +GSTF FT  F            
Sbjct: 442 VDGSSTRQFEGTGLGLSISKRLVALMGGRMGLDSEVGVGSTFWFTLPFAK---------- 491

Query: 546 QQMNNQPNSVS----SEFQGMKALVVDPRPIRAKVSRYHIQRLGI---QVEVVSDQLQCL 598
               +QP   +       +G   L+VD       +    +   G    + E   + ++ L
Sbjct: 492 ---QDQPRKPAIKPRQSVRGSHVLIVDDNATNRTILNKTLVSFGCFPEEAESGGEAMELL 548

Query: 599 SQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 658
           +Q  +  +  + +L++ ++ E D       V  +R       +++ +L +      A   
Sbjct: 549 AQRMAEGRPFDAVLLDHQMPEMDGEA---VVRAIRSKPGNENTRILILTSVGERGDARRF 605

Query: 659 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI---RNWELPSMSLRHLL----LGR- 710
            D +   + + KP+R S+L  +L   + VG+   +     +  P++  RH L    +G+ 
Sbjct: 606 KD-LGCCAYLNKPVRQSLLLDALAETL-VGSDVKVCHKTGYNRPAIITRHSLGEEAMGKA 663

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
           ++L+V+DN VN +VA   L++ G  V     G  A E +     +D  FMDIQMP MDG+
Sbjct: 664 RVLLVEDNLVNQRVAVRILEKAGHTVHVAGDGLVALEAV-KKDNYDVVFMDIQMPGMDGY 722

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            AT  IR+M   F+                    +PI+AMTA  ++   E+C+ SGMD Y
Sbjct: 723 AATATIRKMAPRFS-------------------ELPIIAMTAHAMKGDREKCIASGMDDY 763

Query: 831 VSKPFEAEQLYREVSRF 847
           +SKP + + L + V R+
Sbjct: 764 ISKPVKPKGLLKMVQRW 780


>gi|344341478|ref|ZP_08772397.1| PAS/PAC sensor hybrid histidine kinase [Thiocapsa marina 5811]
 gi|343798598|gb|EGV16553.1| PAS/PAC sensor hybrid histidine kinase [Thiocapsa marina 5811]
          Length = 780

 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 186/628 (29%), Positives = 303/628 (48%), Gaps = 92/628 (14%)

Query: 227 HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM 286
            +F A V  + +       +   + +A +AD AKS+FLA +SHEIRTPMNGVLGML++L 
Sbjct: 215 RVFTAVVRDLTETRRQMDALARARDEALSADRAKSEFLAMMSHEIRTPMNGVLGMLELLR 274

Query: 287 DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 346
           D++L   QQD++ TA+ SG  L+++IN++LD +K+E+GKL+L+ +  +LR  ++++  L 
Sbjct: 275 DSQLSHQQQDFIATAEKSGGLLLTVINDILDFSKIEAGKLDLQEIELDLRNTVEEITGLV 334

Query: 347 SGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 406
           +   + + +E+A ++   VP  L+GDP R RQI+ NLMGN++KFT+ G + V V L  + 
Sbjct: 335 ASGVRARPIEVASFVHSDVPRLLVGDPYRIRQILMNLMGNAVKFTDCGEVVVRVGLDRQT 394

Query: 407 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 466
            +   V  E+S                                                D
Sbjct: 395 AEGWVVRFEVS------------------------------------------------D 406

Query: 467 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
           TG GI  +  + +F PF Q   S +R  GGTG+GL ISK L   M G+IG  S P +GS 
Sbjct: 407 TGIGIDPQTVATLFRPFTQADASTTRRFGGTGLGLVISKRLAMLMGGDIGVESTPGVGSR 466

Query: 527 FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
           F FT    +  S             P    ++  G++ L+VD       +   H+ R G 
Sbjct: 467 FWFTLSLKSAESA------------PVYEETDLNGIRTLIVDDNATNRLILENHLARWGA 514

Query: 587 QVEVVSDQLQCLSQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 643
           + E   D  Q L  +  G    +  ++ +++ ++      +  + + +  K    F +  
Sbjct: 515 RTECAEDGPQALEALQRGLEQDRPFDLAILDMQM----PGMDGIELAHRIKGDDAFGATR 570

Query: 644 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN-KGNIRNWELPSMS 702
            ++ +S+          G+ +   ++KP+R  +L  +  + +G+      I    LP  +
Sbjct: 571 LIMLSSLGYPGPEARRVGIEV--TLLKPVREILLHDAAAKVLGMSRPDAGI----LPVTA 624

Query: 703 LRHL-LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761
            R       ++L+ +DN VN KV    L+R+G        G+ A E      +FD   MD
Sbjct: 625 KRPTRRFDARVLVAEDNAVNQKVVTMMLRRFGIEPGIAPDGQAAIE-AAAQVRFDLILMD 683

Query: 762 IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 821
           IQMP++ G EAT+ IR  E +  +    GE            H+PI+AMTA V +   E+
Sbjct: 684 IQMPKLSGHEATRHIRATERDRGD----GE------------HIPIVAMTAGVSERDRED 727

Query: 822 CLRSGMDGYVSKPFEAEQLYREVSRFFP 849
           C  +GMD ++SKP +  +L   + R+ P
Sbjct: 728 CSAAGMDDFISKPAQIAELEAVLLRWLP 755


>gi|119718530|ref|YP_925495.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
 gi|119539191|gb|ABL83808.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
          Length = 1090

 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 208/629 (33%), Positives = 310/629 (49%), Gaps = 90/629 (14%)

Query: 236 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 295
           +A+ E     + E +  A  A   KS+FLAT+SHEIRTPMNGV+G+ D+L+ +ELD  Q+
Sbjct: 406 VAERERSAAQLAEARDDAMEASRLKSEFLATMSHEIRTPMNGVIGLTDLLLLSELDDHQR 465

Query: 296 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 355
                 Q +G  L+ +IN++LD +K+ESGKLELE+  F++RA+ D V S+ SG +  KG+
Sbjct: 466 RLAENLQGAGLTLLGIINDILDLSKIESGKLELESADFDVRAVFDQVASVLSGPAHAKGL 525

Query: 356 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415
           EL V     VP  L GD  RF QI+TNL  N++KFT++G + V       V+   E E E
Sbjct: 526 ELVVACHPEVPVQLRGDAVRFGQILTNLGSNAVKFTDQGEVVVQA----RVLAEHEHEHE 581

Query: 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 475
             S      G+ V                               L V V DTG GI   +
Sbjct: 582 SESEPGPGPGHEVV------------------------------LQVDVADTGVGIEPHS 611

Query: 476 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535
           + R+F  F Q  PS +R HGGTG+GL+IS+ L   + GEI   S P  GSTF+FTA FG 
Sbjct: 612 RERLFDAFTQADPSTTRRHGGTGLGLAISRQLAIALGGEIWVESEPGRGSTFSFTARFGR 671

Query: 536 GS---STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHI-QRLG------ 585
           GS     S EH            +    G +ALV+D      + +R+ + ++LG      
Sbjct: 672 GSGATGASREH------------ARHLAGRRALVIDDN----ETNRFILEEQLGAWRMRP 715

Query: 586 IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 645
           + V   ++ +  L + A      ++ L++  +   D     +    +R         + L
Sbjct: 716 VAVACATEAIATLREAARSGDPYDVALLDLMMPGTD---GLMLARQIRADPSVGAPAMLL 772

Query: 646 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH 705
           L +  + +R     +G  + + + KP+R   L  +LQ  +     G+      P+ S   
Sbjct: 773 LTSDQTVTR--EEVEGAGVHASLSKPVRHGELRGALQALL-----GDATTRPAPA-SPAG 824

Query: 706 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 765
             LG ++L+V+DN VN  VAA  L+  G  V  V  G +A  LL  PH++ A  MD +MP
Sbjct: 825 PGLGIRVLVVEDNQVNQLVAAGLLENLGCTVDVVSDGVEAVRLLTRPHEYAAALMDCRMP 884

Query: 766 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 825
            +DGF+AT+ +R                   +E V    VPI+A+TA  ++   E CL +
Sbjct: 885 RLDGFDATRQVRR------------------HEPVGR-RVPIIALTASAMEGERERCLDA 925

Query: 826 GMDGYVSKPFEAEQLYREVSRFFPPIPDR 854
           GMD Y++KP +  +L R +  +  P  DR
Sbjct: 926 GMDDYLTKPVDTAELERVIREWAVPERDR 954


>gi|291570781|dbj|BAI93053.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39]
          Length = 1235

 Score =  276 bits (707), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 199/613 (32%), Positives = 297/613 (48%), Gaps = 107/613 (17%)

Query: 248  ELKKKAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL K  EAA      KSQFLA +SHEIRTPMNGVLGM  +L+ TELD  Q+D+V+  + S
Sbjct: 560  ELVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDTKQKDFVQAIRTS 619

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
               L+++IN++LD +K+E+ ++ELE + F+L   L++++ L + ++++KG+ELA  +   
Sbjct: 620  ANHLLAIINDILDFSKLEAQEIELEDLDFDLEECLENIIDLLAAQAENKGIELAAIVDRN 679

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            VP  L GDPGR RQ++ NLM N IKFT  G + + V                        
Sbjct: 680  VPRYLRGDPGRLRQVLLNLMSNGIKFTPAGEVTLRV------------------------ 715

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                 S  P    +A LI L   V+DTG GIP E+  R+F  F 
Sbjct: 716  ---------------------SRPPNYDINAPLI-LRYEVQDTGIGIPPESHGRLFEAFS 753

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            QV  S +R  GGTG+GL I K LV  M GEIG  S+   GS F FT  F    + S    
Sbjct: 754  QVDASTTRKFGGTGLGLVICKQLVDVMGGEIGLESVVGQGSNFWFTLPFSISKTAS---- 809

Query: 545  SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--- 601
                 N P +++     +K LVVD      +  RY IQ  G+++E  S     LS++   
Sbjct: 810  ---FPNLPETLTK----LKILVVDANASVRQSVRYLIQSWGMELEEASGPEMALSKLRDA 862

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ-------SKLFLLANSISSSR 654
            A+ ++   + + +Q           L ++  + L    Q       +KL L+ +    S 
Sbjct: 863  ANNNQPFKLAIFDQ----------NLLIDGDKNLAAVIQNEPMLSDTKLVLMTSMRRLSS 912

Query: 655  ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL-------PSMSLRHLL 707
                 D     S ++KP+R+S L  +L  AM     GN+  +          S +L    
Sbjct: 913  VEDLLDDGWANSYLIKPVRASRLFDALLTAMANEITGNLAEFRSRSDGFGDNSTTLSPTG 972

Query: 708  LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
            L  K+L+ +D+ +N +V    L   G      E G++  ELL   H +D  FMD QMP++
Sbjct: 973  LDLKVLLAEDHPINQQVLLNQLSLLGIEADLAENGEQVLELLSDRH-YDLVFMDCQMPKL 1031

Query: 768  DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
            DG+  TK +R+ E                    ++ H  ++A+TA  + +  ++CL +GM
Sbjct: 1032 DGYATTKELRKREG-------------------TDRHTTVIALTAHAMPSDRQKCLSAGM 1072

Query: 828  DGYVSKPFEAEQL 840
            D Y+SKP   E+L
Sbjct: 1073 DDYISKPITQEEL 1085


>gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1702

 Score =  276 bits (707), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 200/627 (31%), Positives = 299/627 (47%), Gaps = 92/627 (14%)

Query: 227  HIFQATVNR-IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 285
            +I +A +N  I  ++E        K+ AEAA  AKS F+A +SHEIRTPMNG++GM D+ 
Sbjct: 1050 NILKAIINEMIHNLKETTIKNTLAKEAAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLT 1109

Query: 286  MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 345
            +DTEL+  Q++Y+   Q+S  +L+++IN++LD +K+E+G+LEL+   F+LR IL + L  
Sbjct: 1110 LDTELNAEQREYLTMVQSSAASLLTIINDILDFSKIEAGRLELDKSDFSLRTILYETLKT 1169

Query: 346  FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 405
             + +S  KG+E+   I    P+ LIGDPGR RQI+TNL+GN+IKFT +G + +TV L E+
Sbjct: 1170 LAWRSHQKGLEIICDIIPDTPDHLIGDPGRLRQIVTNLVGNAIKFTAEGEVSLTVKL-ED 1228

Query: 406  VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 465
            + +                                                 + L  SV 
Sbjct: 1229 ITNG-----------------------------------------------EVTLAFSVA 1241

Query: 466  DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 525
            DTG GIP E    IF  F Q   SI+R +GGTG+GL+IS  LV  M G++   SIP  GS
Sbjct: 1242 DTGIGIPAEKLHLIFEAFSQADGSITRKYGGTGLGLTISTRLVELMGGKLKAESIPGKGS 1301

Query: 526  TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
             F F A F  G + +   NS+ M           + +  L++D      +V    +   G
Sbjct: 1302 RFDFIAKFPLGQAPT--ENSKIM----------LKDVNTLIIDDNKSTRRVLHQMLSEYG 1349

Query: 586  IQVEVVSDQ---LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642
            +  +    Q      L + A   +    I ++ ++  KD       V    K    F   
Sbjct: 1350 VSADTTDSQDSAFHMLREAAMKKQPYEYIFMDAQLNGKD----GFLVAEAIKQDPSFGQA 1405

Query: 643  LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSM 701
              ++    S  R +       I   + KP+    +   +Q       K  I+   ++   
Sbjct: 1406 SIIMLICGSGQRGDPENRSSVISGYLSKPVSPVEMLEVIQ----CSTKPLIKQLQQITRD 1461

Query: 702  SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761
            + +   +  +IL+ +DN VN ++A   L+R+G  V   E G +A         FD   MD
Sbjct: 1462 TPQPAPIQSEILLAEDNVVNQRLAIRLLERFGHKVTLAENGLQAVA-ASEMKDFDLILMD 1520

Query: 762  IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 821
            +QMP M GFEAT  I         RIR         E V N H PI+AMTA  +Q   E+
Sbjct: 1521 VQMPHMGGFEATSTI---------RIR---------EKVMNKHTPIIAMTAHALQKDKEK 1562

Query: 822  CLRSGMDGYVSKPFEAEQLYREVSRFF 848
            CL +GMD Y+SKP   +QL   + ++ 
Sbjct: 1563 CLNAGMDDYLSKPINPDQLRAVIEKYL 1589


>gi|409993617|ref|ZP_11276752.1| sensory box histidine kinase/response regulator [Arthrospira
            platensis str. Paraca]
 gi|409935526|gb|EKN77055.1| sensory box histidine kinase/response regulator [Arthrospira
            platensis str. Paraca]
          Length = 1242

 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 199/613 (32%), Positives = 297/613 (48%), Gaps = 107/613 (17%)

Query: 248  ELKKKAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL K  EAA      KSQFLA +SHEIRTPMNGVLGM  +L+ TELD  Q+D+V+  + S
Sbjct: 567  ELVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDTKQKDFVQAIRTS 626

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
               L+++IN++LD +K+E+ ++ELE + F+L   L++++ L + ++++KG+ELA  +   
Sbjct: 627  ANHLLAIINDILDFSKLEAQEIELEDLDFDLEECLENIIDLLAAQAENKGIELAAIVDRN 686

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            VP  L GDPGR RQ++ NLM N IKFT  G + + V                        
Sbjct: 687  VPRYLRGDPGRLRQVLLNLMSNGIKFTPAGEVTLRV------------------------ 722

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                 S  P    +A LI L   V+DTG GIP E+  R+F  F 
Sbjct: 723  ---------------------SRPPNYDINAPLI-LRYEVQDTGIGIPPESHGRLFEAFS 760

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            QV  S +R  GGTG+GL I K LV  M GEIG  S+   GS F FT  F    + S    
Sbjct: 761  QVDASTTRKFGGTGLGLVICKQLVDVMGGEIGLESVVGQGSNFWFTLPFSISKTAS---- 816

Query: 545  SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--- 601
                 N P +++     +K LVVD      +  RY IQ  G+++E  S     LS++   
Sbjct: 817  ---FPNLPETLTK----LKILVVDANASVRQSVRYLIQSWGMELEEASGPEMALSKLRDA 869

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ-------SKLFLLANSISSSR 654
            A+ ++   + + +Q           L ++  + L    Q       +KL L+ +    S 
Sbjct: 870  ANNNQPFKLAIFDQ----------NLLIDGDKNLAAVIQNEPMLSDTKLVLMTSMRRLSS 919

Query: 655  ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL-------PSMSLRHLL 707
                 D     S ++KP+R+S L  +L  AM     GN+  +          S +L    
Sbjct: 920  VEDLLDDGWANSYLIKPVRASRLFDALLTAMANEITGNLAEFRSRSDGFGDNSTTLSPTG 979

Query: 708  LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
            L  K+L+ +D+ +N +V    L   G      E G++  ELL   H +D  FMD QMP++
Sbjct: 980  LDLKVLLAEDHPINQQVLLNQLSLLGIEADLAENGEQVLELLSDRH-YDLVFMDCQMPKL 1038

Query: 768  DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
            DG+  TK +R+ E                    ++ H  ++A+TA  + +  ++CL +GM
Sbjct: 1039 DGYATTKELRKREG-------------------TDRHTTVIALTAHAMPSDRQKCLSAGM 1079

Query: 828  DGYVSKPFEAEQL 840
            D Y+SKP   E+L
Sbjct: 1080 DDYISKPITQEEL 1092


>gi|375146975|ref|YP_005009416.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
 gi|361061021|gb|AEW00013.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
          Length = 1019

 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 187/626 (29%), Positives = 315/626 (50%), Gaps = 100/626 (15%)

Query: 231  ATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL 290
            A + RI   ++    +M  K+ AEAA  AKS F+A +SHE+RTPMNG++G  D+++ T+L
Sbjct: 481  AAIERIQMAQQ----LMAAKENAEAASKAKSDFMANMSHELRTPMNGIIGFTDLVLTTDL 536

Query: 291  DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKS 350
              TQ+DY++    S   L+++IN++LD +K+E+GKL ++ V F+L  ++++ + + S K+
Sbjct: 537  QKTQRDYLKNVSKSAYNLLNIINDILDFSKIEAGKLLIDEVPFDLSELIEETVEILSIKA 596

Query: 351  QDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 410
            ++KG+E+   I   +P  LIGDP R +Q++TNLMGN++KFT +G IFV V          
Sbjct: 597  EEKGLEVVCSIDPELPSQLIGDPLRIKQVLTNLMGNAVKFTAEGEIFVKVQ--------- 647

Query: 411  EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
                               +  H+  G    + D                 ++V+DTG G
Sbjct: 648  ------------------PNGVHNCNGNLYMDID-----------------ITVKDTGIG 672

Query: 471  IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
            IP +    IF  F Q   S +R  GGTG+GL+ISK LV  M G +   SIP  GS+FTF+
Sbjct: 673  IPDDKLHAIFESFTQADNSTTRKFGGTGLGLTISKSLVELMGGRLAVGSIPGNGSSFTFS 732

Query: 531  AVFG--NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 588
                  NG+              P +  S+    + LVVD       + R     L I  
Sbjct: 733  LALKVVNGAP-------------PVTFYSKPLLREVLVVDDNETNCNLMRGIFDYLHIPC 779

Query: 589  EVV---SDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 645
            +V    ++ L  ++Q    ++  ++I+ + ++   D       V  ++KL  G      L
Sbjct: 780  KVCYSGAEALSVITQSIRDNEPFDLIITDHQMPVMD---GITLVKEIKKLLKGQTEPFIL 836

Query: 646  LANSISSSRANTSTDGVSIPSVIMKPLR----SSMLAASLQRAMGVGNKGNIRNWELPSM 701
            + +S+  +   +  +   I   + KP++    +++L+A   +A   G K +I   E    
Sbjct: 837  MLSSLEKTLYQSEAEKTGINKFLSKPVKLHELNNILSAIFNKAFDKGPKESIPVIE---- 892

Query: 702  SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761
            ++ ++    ++L+V+D  +N+ + +  L++ G  V+    GK+A  +++  H  D  FMD
Sbjct: 893  TMENI---TRVLVVEDEPMNMLLISEVLRKMGVEVLKAGNGKEAL-VMVAVHAPDLVFMD 948

Query: 762  IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 821
            + MP MDGF AT+ IR      +                    +PI+A+TAD ++   E 
Sbjct: 949  VNMPVMDGFAATRQIRTSTTGLSK-------------------IPIIALTADAMEEDKER 989

Query: 822  CLRSGMDGYVSKPFEAEQLYREVSRF 847
            CL SGM+ Y+SKPF+ E++Y  V ++
Sbjct: 990  CLESGMNDYISKPFKLEEIYSVVRKY 1015


>gi|262165591|ref|ZP_06033328.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
 gi|262025307|gb|EEY43975.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
          Length = 1325

 Score =  276 bits (706), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 195/610 (31%), Positives = 305/610 (50%), Gaps = 101/610 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL++  +AAD    AK  FLA +SHEIRTPMN +LGM  + ++T+LD TQ+ YV     S
Sbjct: 592  ELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL++E + F+L  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKIEAGKLDVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT++G I ++  +                      
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARV---------------------- 749

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                          +  N+              + L+ +V+DTG GI  E  S +F  F 
Sbjct: 750  --------------RQLNEQQ------------VMLLFAVKDTGIGIAQEKLSDLFNAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQISVHSEEGKGSTFEFSVVCGLQEAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      ++    G+   + LVVD       +    +  +   V  VS+  + LS++
Sbjct: 842  ----------IAQPLHGLANKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSEL 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+  +   W          +  ++ LG    +K FL+      I+    N+ 
Sbjct: 892  Q--HKPFDMLFAD---WNMPGMNGIELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 I ++I+KP+  S L  ++  + G+ +  + +N ELP  S R    G+K+L+V+DN
Sbjct: 947  L----IDALIVKPVNPSNLLDAIVTSYGIDHVRHKQN-ELPQHS-RPNFTGQKLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G +V     G++A E L     FD   MD+QMP MDG  ATK IR 
Sbjct: 1001 EVNQEVALGLLEETGLSVTIANNGQEALEKL-ENADFDLVLMDMQMPVMDGITATKYIRT 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +               ++PI+AMTA+ +    E CL+ GM+G++SKP E +
Sbjct: 1060 -----NGRWK---------------NLPIVAMTANAMATDIERCLQVGMNGHLSKPIEVD 1099

Query: 839  QLYREVSRFF 848
            + Y+ + +F 
Sbjct: 1100 KFYQVLKQFL 1109


>gi|392411875|ref|YP_006448482.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
 gi|390625011|gb|AFM26218.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
          Length = 1269

 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 193/610 (31%), Positives = 306/610 (50%), Gaps = 88/610 (14%)

Query: 248  ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            +L+ +AE A +AKS+FLA +SHEIRTPMN ++G   + + T+L   Q+DY+    +S K 
Sbjct: 510  QLRTQAEFATLAKSEFLAKMSHEIRTPMNAIIGFAGLALKTDLTSKQRDYLSKIDSSAKT 569

Query: 308  LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
            L+ +IN++LD +K+E+GKL+LE++ F L  +++ + ++ S K+ +K +EL   I   VP 
Sbjct: 570  LLGIINDILDFSKIEAGKLDLESIDFQLDEVINGIANMVSVKASEKDLELISQIGSNVPA 629

Query: 368  TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 427
             LIGDP R  Q++ NL+ N++KFTE GHI + V  V                        
Sbjct: 630  ALIGDPLRLGQVLVNLVNNAVKFTEHGHILIKVENV------------------------ 665

Query: 428  VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487
                                   K+S  D + L  SV DTG G+  +  +R+F  F Q  
Sbjct: 666  -----------------------KNSYTDCV-LKFSVTDTGIGMTPDQMTRLFAAFSQAD 701

Query: 488  PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 547
             S++R  GGTG+GL+ISK+LV  M G+I   S    GSTF+F+  FG     S E   Q 
Sbjct: 702  TSVTRKFGGTGLGLTISKHLVEMMGGQISVESELGRGSTFSFSIEFGRA---SREKRRQL 758

Query: 548  MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 607
            +   P SV    +G+K LVVD  P   +V    +  L  +V         +S++   S  
Sbjct: 759  V--PPQSV----EGLKVLVVDDNPTAREVLVEQLDSLKFRVMSAPSARAAISELKRSSAQ 812

Query: 608  ---INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
                ++++++ ++ E D   ++  + N   L     +   ++  +       T  + V I
Sbjct: 813  DAPYDLVVMDWKMPEMDGIEASRVIRNDADLQ---HAPSIIMVTAFGREDVMTRAEEVGI 869

Query: 665  PSVIMKPLRSSMLAASLQRAMG-VGNKGNI-RNWELPSM--SLRHLLLGRKILIVDDNNV 720
               +MKP+  S++  ++ +  G   + G I R    P++      L+ G K+L+V+DN +
Sbjct: 870  NGFLMKPVTPSLMFDTIMQVFGHEPSTGTIQRRAAAPAVEPDFADLIEGAKVLLVEDNAL 929

Query: 721  NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
            N +VA   L   G  V     GK+A E +    ++D   MD+QMP M G+EAT +IR+  
Sbjct: 930  NQQVANEILAGAGLFVEIANNGKEAVEAV-ETSEYDLVLMDVQMPVMGGYEATAVIRK-- 986

Query: 781  HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
               N R +                +PI+AMTA  ++   EECL +GM+ YVSKP +  QL
Sbjct: 987  ---NPRFK---------------DLPIVAMTAHAMRGAKEECLNAGMNDYVSKPIDPAQL 1028

Query: 841  YREVSRFFPP 850
            +  + R+  P
Sbjct: 1029 FSVLVRWIKP 1038


>gi|374311111|ref|YP_005057541.1| multi-sensor hybrid histidine kinase [Granulicella mallensis
           MP5ACTX8]
 gi|358753121|gb|AEU36511.1| multi-sensor hybrid histidine kinase [Granulicella mallensis
           MP5ACTX8]
          Length = 931

 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 198/644 (30%), Positives = 327/644 (50%), Gaps = 105/644 (16%)

Query: 216 IGILVIASLVGHIFQATVNRIAKVEEDYHGMMELK-------KKAEAADVAKSQFLATVS 268
           +GI+++ S++   +     ++   E+ Y  M+E +       + AEA+  AKS+FLA +S
Sbjct: 236 LGIVILTSVLDRRYSLQAVQLELSEQRYR-MIEAEAAGRERVRAAEASSQAKSEFLANMS 294

Query: 269 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 328
           HEIRTP+NG++GM D+ ++TEL   Q+DY+ T + SG AL+++IN++LD +K+E+GK+EL
Sbjct: 295 HEIRTPLNGIIGMTDLALETELTQEQRDYLETVKLSGDALLNVINDILDFSKIEAGKIEL 354

Query: 329 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 388
           E + FNL   ++  L   + ++ +KG+EL   +S  + E + GDPGR RQI+ N++GN+I
Sbjct: 355 EEIDFNLCNCIEGTLKTLALRADEKGLELLCDVSPHIAEVVSGDPGRLRQILLNVIGNAI 414

Query: 389 KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 448
           KFT KG I            S++V+++L   K +                          
Sbjct: 415 KFTSKGEI------------SLKVKSDLIEEKKS-------------------------- 436

Query: 449 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 508
                   +++ I++  DTG GI  E  + IF  F Q   S +R  GGTG+GL+IS+ LV
Sbjct: 437 --------ILHFIIT--DTGIGIAPEKLTTIFDSFNQADTSTTREFGGTGLGLTISRCLV 486

Query: 509 GRMKGEIGFVSIPNIGSTFTFTAVFGN-GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVV 567
             M G++   S   +GS F FT       +    +H  Q              G+K L+V
Sbjct: 487 EMMGGKLWVESEVGVGSQFHFTIPMKYVDTPIEVDHIVQD---------KALNGVKVLIV 537

Query: 568 DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI---INMILVEQEVWEKDTSV 624
           D      ++    + R G+   VVS   + L+++ +  +     +++L + ++   D   
Sbjct: 538 DDNRTNRRILEGLLTRWGMVPTVVSGGEEALAKLHAAVQSGVPYDLVLTDMQMPNMD--- 594

Query: 625 STLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG-VSIPSVIMKPLRSSMLAASLQR 683
               V N+++      + + +L +   S R +T+    + I + ++KP+R   L  ++ R
Sbjct: 595 GFGLVENIKQKADISTATIMMLTS--GSKRGDTARCAELGIAAYLLKPVRQVELRQAILR 652

Query: 684 AMGV----GNKGNIRNWELPSMSLRHLLLGRK---ILIVDDNNVNLKVAAAGLKRYGAAV 736
            +      G +GN+    +   +LR  L   K   IL+ +DN +N K+A   L++ G  V
Sbjct: 653 VLQAKEQHGEEGNM----VTQSTLREELSSAKVLNILLAEDNAINQKLAKRLLEKRGHKV 708

Query: 737 VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEA 796
              E GK+A   L     FD   MD+QMPEMDG EAT+ +RE                  
Sbjct: 709 SVAENGKEALAAL-EKSSFDLVLMDVQMPEMDGLEATRTLRE------------------ 749

Query: 797 YENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
            E ++ FH P++AMTA  ++   E CL +GMDGY+SKP  ++ L
Sbjct: 750 REKLTGFHCPVVAMTALAMKGDQERCLEAGMDGYLSKPISSQAL 793


>gi|430744391|ref|YP_007203520.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
 gi|430016111|gb|AGA27825.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
          Length = 1159

 Score =  276 bits (705), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 184/606 (30%), Positives = 302/606 (49%), Gaps = 86/606 (14%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +++A  A  AK  FLA +SHEIRTPMN ++GM  + + T+L   Q+DY++    S KAL+
Sbjct: 398 REEAVEASRAKGDFLANMSHEIRTPMNAIIGMSHLALQTDLAPKQRDYLKKIDGSAKALL 457

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +IN++LD +K+E+G+L++EA  FNL  +LD V +L + K+++KG+E+       +P  L
Sbjct: 458 RIINDILDFSKIEAGRLDMEAAEFNLEDVLDSVATLITPKAEEKGLEVLFRTEPGLPLHL 517

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GD  R  QI+ NL GNS+KFTE+G I ++  LVE                         
Sbjct: 518 VGDSLRLGQILINLAGNSVKFTEQGEIVISTQLVE------------------------- 552

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                    KT  Q                L  SV DTG G+  E   ++F PF+Q   S
Sbjct: 553 ---------KTEEQ--------------AVLAFSVRDTGIGMTAEQAGKLFQPFVQADSS 589

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R  GGTG+GLSISK LV  M G+I   S P  GS F FTA FG          +++  
Sbjct: 590 TTRKFGGTGLGLSISKQLVEIMGGQISVESEPGKGSVFDFTAAFG---------LARKSR 640

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSK 606
            +   +  E QG++ LVVD      ++    ++ +  +V V +   + L  L + A   +
Sbjct: 641 IRFGRLVGELQGLRVLVVDDSGTSREILTDALESMSFEVGVATTGAEALVALDRAADEGR 700

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
             +++L++ ++   D   +   +    +L    Q+   ++  +       +  + V +  
Sbjct: 701 PFDLVLMDYKMPGMDGIEAARRIKKSSRL---HQAPTVVMVTAYGREEIMSRAERVGVEG 757

Query: 667 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNVNLKV 724
            ++KP+  S+L  ++    G     + R   +P+M L  +  + G ++L+ +DN +N +V
Sbjct: 758 FLIKPVGQSVLLNTIMEVFGHSKHQDFRPLTVPAMQLEAMGSIRGSRVLVAEDNEINQQV 817

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
           A   L+  G  V     G++A EL+   + +DA  MDIQMPE+DG +AT     +E   +
Sbjct: 818 AREILESAGLVVDIAANGREAVELVR-ANPYDAVLMDIQMPELDGLQAT-----VELRGD 871

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
            R R                +PI+AMTA  +    E+ L++GMD +V+KP + + L+  +
Sbjct: 872 GRYR---------------DLPIIAMTAHAMAGDREQSLKAGMDDHVTKPIDPDVLFAVL 916

Query: 845 SRFFPP 850
            R+  P
Sbjct: 917 LRWIKP 922


>gi|189347431|ref|YP_001943960.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
 gi|189341578|gb|ACD90981.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
          Length = 1397

 Score =  276 bits (705), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 208/630 (33%), Positives = 299/630 (47%), Gaps = 116/630 (18%)

Query: 245  GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
             +++ +  AEAA+ AKS+FLA +SHEIRTPMNGV+GM  +L++T L   Q+ + +TA AS
Sbjct: 858  ALLDARLAAEAANRAKSEFLANMSHEIRTPMNGVIGMTRLLLNTSLAEEQRSFAQTALAS 917

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
            G++L+++IN++LD +K+E+GKLELE +SF+LR +LDD  ++ + K+ DKG+E        
Sbjct: 918  GESLLTVINDILDFSKIEAGKLELEEISFDLRLLLDDFAAIMAVKAGDKGLEFICAALPD 977

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            VP   IGDP R RQI+TNL GN++KFT KG + V V L+ E            + +  L 
Sbjct: 978  VPVRFIGDPDRIRQILTNLAGNAVKFTHKGEVAVYVSLLRE------------TDEEVLV 1025

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
             + V D                                    TG GIP E   R+F  F 
Sbjct: 1026 RFSVKD------------------------------------TGIGIPREKLDRLFRSFT 1049

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            QV  S++R +GGTG+GL+IS+ LV  M GEIG  S   IGS F FT      S   N   
Sbjct: 1050 QVDASMTRKYGGTGLGLAISRQLVELMSGEIGVNSQSGIGSEFWFTL-----SLKKNIFP 1104

Query: 545  SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV---SDQLQCLSQI 601
            S+      +S++    G + LVVD       + R  +   G++V  V   S  ++ L Q 
Sbjct: 1105 SENGQYPLDSIT----GTRLLVVDDNAENRNMLRMLLTSWGVRVSEVSCASTAIERLRQA 1160

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
            A       + +++ E+ E D     L +    K          L+ NSI     N     
Sbjct: 1161 AEEGDPFRIAIIDMEMPEID----GLMLGRSIKDETALADTALLMMNSIGRRPDNEKLRR 1216

Query: 662  VSIPSVIMKPLRSSML-----------------AASLQRAMGVGNKGNIRNWELPSMSLR 704
                S ++KP+R S L                 A SLQ  +  G           S++L 
Sbjct: 1217 SGFFSFLVKPVRQSELYNTVSEVLFSRDIDPCNAESLQEKLAAG-----------SVTLS 1265

Query: 705  HLLLGRK------ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
              +   K      IL+ +D+ VN  V    L + G  V  V  G++A   L     +D  
Sbjct: 1266 EAVDSEKNDSPVRILLAEDSAVNQLVVTGILSKLGYVVDPVFNGQEALARLR-EFAYDLV 1324

Query: 759  FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
             MDIQMPEMDG EAT+IIR+                     V    VP++A+TA  +   
Sbjct: 1325 IMDIQMPEMDGLEATRIIRDQA-----------------SAVLRHDVPVIALTAHAMHGD 1367

Query: 819  YEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             E CL+SGM+ YVSKP +   L   + ++ 
Sbjct: 1368 REICLQSGMNDYVSKPIDPPALIGVIKKWL 1397


>gi|194333102|ref|YP_002014962.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM
            271]
 gi|194310920|gb|ACF45315.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM
            271]
          Length = 1040

 Score =  275 bits (704), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 198/625 (31%), Positives = 300/625 (48%), Gaps = 92/625 (14%)

Query: 238  KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
            K+E       +L ++A+ A  AKS+FLA +SHEIRTPMNGV+GM  +L++T+L   Q  Y
Sbjct: 494  KLENASRKAKKLAEQAQEASKAKSEFLANISHEIRTPMNGVIGMTGLLLETDLTPQQHRY 553

Query: 298  VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
              T  +S ++L+ LIN++LD +K+E+GKL LE + F+L+ ++DD  + F+ +++ K +E 
Sbjct: 554  AGTIASSAQSLLDLINDILDVSKIEAGKLTLEILDFDLQELMDDFAASFAIQAEQKNLEF 613

Query: 358  AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
               I   +P  L GDPGR RQI+ N+ GN++KFT KG I + V L               
Sbjct: 614  LCSIEPGIPTRLTGDPGRLRQILMNIAGNAVKFTSKGEIAIYVTL--------------- 658

Query: 418  SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                              S   D + L   + DTG GI  E   
Sbjct: 659  ---------------------------------DSDCDDQVVLRFCIRDTGIGIAKEKID 685

Query: 478  RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
             +F  F Q+  S +R +GGTG+GLSI+K LV  M+G IG  S  N GS F FTA      
Sbjct: 686  TLFEKFTQIDASATRQYGGTGLGLSIAKDLVELMQGSIGVESTVNQGSLFWFTAKL---- 741

Query: 538  STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV---SDQ 594
               N      +  Q +   S F G KAL+VD      ++    +   G++ E      D 
Sbjct: 742  ---NRQTHATLQAQESKNRSLF-GQKALIVDDNATNREILSKRLLSWGMRPEESDNGQDA 797

Query: 595  LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 654
            L  L + ++ +    + +++ ++ E D     +    +R+      S   ++  S+ ++ 
Sbjct: 798  LDMLIRASTSTDAFTIAVIDMQMPEMD---GVMLGKAIREHE-ALMSLQMIMMTSLGNNG 853

Query: 655  ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR---- 710
             ++  +     + + KP++   L  +L   + +         E PS    + LL R    
Sbjct: 854  ESSLAEKAGFSAWLQKPVQIKKLKNAL---IALSATQEPEADEQPSQKKPNNLLNRFAEC 910

Query: 711  --KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768
              +IL+V+DN VN +VA   LK++G  V  V  GK+A   LM    +D   MDIQMP MD
Sbjct: 911  KARILLVEDNIVNQQVAMLMLKKFGLHVDGVANGKEALSALM-SLPYDVVLMDIQMPVMD 969

Query: 769  GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
            G EAT+           RIR GE    A        +PI+AMTA   Q+  E CL +GM+
Sbjct: 970  GLEATR-----------RIRNGECGTSA--------IPIIAMTAHAKQSDRELCLATGMN 1010

Query: 829  GYVSKPFEAEQLYREVSRFFPPIPD 853
             YVSKP   + L   + ++ P   D
Sbjct: 1011 DYVSKPVNQQALADTLEKWLPKHSD 1035


>gi|225159367|ref|ZP_03725663.1| Histidine kinase [Diplosphaera colitermitum TAV2]
 gi|224802028|gb|EEG20304.1| Histidine kinase [Diplosphaera colitermitum TAV2]
          Length = 678

 Score =  275 bits (704), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 193/637 (30%), Positives = 309/637 (48%), Gaps = 92/637 (14%)

Query: 229 FQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 285
           F   V  +  + E      EL   + +A  A   KSQFLA +SHEIRTPMNG++GM  +L
Sbjct: 15  FCGYVGSVVDITERKRQEQELATARDQAVHASRLKSQFLANMSHEIRTPMNGIIGMSGLL 74

Query: 286 MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 345
           +DT L   Q+++    Q S +AL+++IN++LD +K+ESG+L ++ V F+LR +++D L+L
Sbjct: 75  LDTRLSPEQREFAEIVQKSAEALLAVINDILDFSKIESGRLNIDEVEFDLRTVVEDTLAL 134

Query: 346 FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 405
              ++ DK +EL       +P  L GDPGR RQIITNL+GN+IKFTE+G + VTV  ++E
Sbjct: 135 LGERAIDKEIELTCEFPSGLPTALRGDPGRIRQIITNLVGNAIKFTERGEVSVTVTRIQE 194

Query: 406 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 465
                                                   +T  F+          +SV 
Sbjct: 195 T--------------------------------------NTTLHFR----------ISVR 206

Query: 466 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 525
           DTG G+  + +  +F PF+Q   S +R  GGTG+GL+IS+ L+  M G IGF + P  GS
Sbjct: 207 DTGIGVADDIKPHLFQPFVQADGSATRKFGGTGLGLAISRQLIEMMGGRIGFTTKPGRGS 266

Query: 526 TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF-QGMKALVVDPRPIRAKVSRYHIQRL 584
           TF F                + +   P  +  +   G + LVVD      ++    ++++
Sbjct: 267 TFWFDLCL-----------PKLLEATPLPLQLDVPPGTRILVVDDSATNLRILDGQLRQM 315

Query: 585 GIQVEVVSDQLQCLSQIASGSKI---INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641
           G+ VE +SD  + L+++   S+      + ++++ +   D          +R      + 
Sbjct: 316 GLGVETLSDPTRTLARLHHASQTGSPFQIAILDRYMPVLD---GIELARRIRADSILQRM 372

Query: 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 701
           K+ +L  S S          + + + ++KP R   L  SL R +G     +  +      
Sbjct: 373 KVVML-TSASHLGELDRVRQLGLDAFLVKPTRQLQLRQSLARVLGAPITADGSSPHPDES 431

Query: 702 SLRHLLLGR----KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 757
             R ++L      ++L+V+DN +N KVA   L+R G      E G++A E+L   H +  
Sbjct: 432 DTRQIVLPDAHTPRVLVVEDNLINQKVAQRHLERLGHTCDVAEHGRRALEMLALHHDYAL 491

Query: 758 CFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQA 817
             MD QMP +DG+E T+           RIR G V         +  +PI+A+TA  ++ 
Sbjct: 492 ILMDCQMPVLDGYETTR-----------RIRAGAVP------GLDPRIPIVALTAYAMET 534

Query: 818 TYEECLRSGMDGYVSKPFEAEQLYREVSRFF-PPIPD 853
             ++CL +GMD  + KP   E+L   + R   PP+PD
Sbjct: 535 DRQKCLDAGMDDCLIKPVRLEELQAMLDRHARPPVPD 571


>gi|449143910|ref|ZP_21774729.1| hypothetical protein D908_03252 [Vibrio mimicus CAIM 602]
 gi|449080441|gb|EMB51356.1| hypothetical protein D908_03252 [Vibrio mimicus CAIM 602]
          Length = 1325

 Score =  275 bits (704), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 196/610 (32%), Positives = 305/610 (50%), Gaps = 101/610 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL++  +AAD    AK  FLA +SHEIRTPMN +LGM  + ++T+LD TQ+ YV     S
Sbjct: 592  ELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + F+L  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT++G I ++  +                      
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARV---------------------- 749

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                          +  N+              + L+ +V+DTG GI  E    +F  F 
Sbjct: 750  --------------RQLNEQQ------------VMLLFAVKDTGIGIAQEKLDDLFNAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQISVHSEEGKGSTFEFSVVCGLQEAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      ++    G+   + LVVD       +    +  +   V  VS+  + LS++
Sbjct: 842  ----------IAQPLYGLANKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSEL 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG    +K FL+      I+    N+ 
Sbjct: 892  Q--HKPFDMLFVD---WNMPGMNGIELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 I ++I+KP+  S L  ++  + G+ +  + +N ELP  S R    G+K+L+V+DN
Sbjct: 947  L----IDALIVKPVNPSNLLDAIVTSYGIDHVRHKQN-ELPQHS-RPNFAGQKLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G +V     G++A E L     FD   MD+QMP MDG  ATK IR 
Sbjct: 1001 EVNQEVALGLLEETGLSVTIANNGQEALEKL-ENADFDLVLMDMQMPVMDGITATKHIRT 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +               ++PI+AMTA+ + A  E CL+ GM+G++SKP E +
Sbjct: 1060 -----NGRWK---------------NLPIVAMTANAMAADIERCLQVGMNGHLSKPIEVD 1099

Query: 839  QLYREVSRFF 848
            + Y+ + +F 
Sbjct: 1100 KFYQVLKQFL 1109


>gi|406836202|ref|ZP_11095796.1| sensor protein [Schlesneria paludicola DSM 18645]
          Length = 1992

 Score =  275 bits (703), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 199/628 (31%), Positives = 298/628 (47%), Gaps = 116/628 (18%)

Query: 229  FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT 288
             + T N + + EE    + E K+ AE A  AKSQFLAT+SHEIRTPMNG++GM D+ + T
Sbjct: 1448 LERTANELRRTEEK---LREAKEAAENASQAKSQFLATMSHEIRTPMNGIIGMTDLTLMT 1504

Query: 289  ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 348
                 Q  Y+R  + S  +L+ L+N++LD +K+E+G+LELE++ F+LR  + D + + S 
Sbjct: 1505 RPTAQQTSYLRVVKQSADSLMRLLNDILDFSKIEAGRLELESIPFDLRETVSDAVRILSV 1564

Query: 349  KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 408
            KS   G+EL   I+  VP  + GD GR RQI+ NL+GN+IKFT +G +FV V+  E   D
Sbjct: 1565 KSAQTGLELNYQIAPDVPLLVGGDAGRLRQILVNLVGNAIKFTAEGEVFVDVWTEERRFD 1624

Query: 409  SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 468
                                                             + L  ++ DTG
Sbjct: 1625 D------------------------------------------------VTLHFAIRDTG 1636

Query: 469  QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 528
             GI  E + RIF  F Q   SI+R  GGTG+GLSIS  LV  M G+I   S    GSTF 
Sbjct: 1637 IGISEEQKDRIFASFSQADNSITRRFGGTGLGLSISSELVELMGGKIWVESELGHGSTFH 1696

Query: 529  FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 588
            FTA        +    S+ +          F  +  L+VD  P    V    ++++G+Q 
Sbjct: 1697 FTARLTLPVEAAASEKSRIV----------FPPVPVLIVDDHPTSRSVLTDTLEQMGLQP 1746

Query: 589  EVVSD--------QLQCLSQIASGSKIINMILVEQEVW------EKDTSVSTLFVNNLRK 634
            + V +        +   +SQ  +   +I+ ++  Q+ W       +D  +S         
Sbjct: 1747 QAVHNAETAYLMMRYAVMSQTPTQLVLIDAMMPGQDGWALAEQIRRDPDLS--------- 1797

Query: 635  LGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV--GNKGN 692
             GC     + + A+ + + + N +    S      KP + S LA ++Q A+ V  GN G+
Sbjct: 1798 -GCPI--LMLVPASHVYTEQQNEALR--SNTWYFTKPAKVSELADAIQEALSVSSGNDGS 1852

Query: 693  IRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 752
            +R   + +          +IL+VDD  VN +VA   L+ +G  V     G++A ELL   
Sbjct: 1853 LREEAVTTQQ------PMRILLVDDAPVNREVATGLLEMFGHHVQTATNGREAVELL-ES 1905

Query: 753  HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA 812
              FD   MD++MPEMDG  A   IR+ E +                   +   PI AMTA
Sbjct: 1906 QAFDVVLMDLEMPEMDGMSAAIEIRKREQS------------------KSVSTPIFAMTA 1947

Query: 813  DVIQATYEECLRSGMDGYVSKPFEAEQL 840
                   + CL +GMDGY++KP + ++L
Sbjct: 1948 HATNDIRDRCLEAGMDGYLTKPIQPDEL 1975


>gi|343508478|ref|ZP_08745820.1| PAS domain-containing protein [Vibrio ichthyoenteri ATCC 700023]
 gi|342793792|gb|EGU29580.1| PAS domain-containing protein [Vibrio ichthyoenteri ATCC 700023]
          Length = 1803

 Score =  275 bits (703), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 197/637 (30%), Positives = 313/637 (49%), Gaps = 89/637 (13%)

Query: 222  ASLVG-HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
            A+L G  +F   V    + +E    +M  K+KAE A  AKS FLA +SHEIRTPMN ++G
Sbjct: 946  ATLAGEQLFTGIVRDATERKEAERELMLAKQKAEEATQAKSDFLANMSHEIRTPMNAIIG 1005

Query: 281  MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
            M  + M T+L+  Q DYV   Q S ++L+ +IN++LD +K+E+GKL+LE   F+L + +D
Sbjct: 1006 MSYLAMQTQLNKKQADYVNKIQTSAESLLGIINDILDFSKIEAGKLDLEQTEFDLESTID 1065

Query: 341  DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
            +++ + S ++Q+K +EL V +  ++P  LIGDP R  QI+ NL  N+IKFT++G I V  
Sbjct: 1066 NLVQVVSQRTQEKDLELLVDLDPQLPTHLIGDPLRLGQILLNLANNAIKFTDRGEIIVKA 1125

Query: 401  YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 460
             L+E   D +E    +S                                           
Sbjct: 1126 ELIELGDDIVEARFSVS------------------------------------------- 1142

Query: 461  IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520
                 DTG G+  E  +R+F  F Q   S +R +GGTG+GL+ISK L   M G I   S 
Sbjct: 1143 -----DTGIGMTQEQMARLFQSFSQADASTTRKYGGTGLGLTISKTLSEMMNGSIWVESE 1197

Query: 521  PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 580
               GSTF FTA FG     S+E+  QQ+   P S+    QG+  L+VD      ++    
Sbjct: 1198 SGQGSTFFFTAQFG----ISSEYPQQQV-LPPQSM----QGVSVLIVDDSVAAREILFSL 1248

Query: 581  IQRLGIQVEVVSDQLQCLSQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637
               L    +V     + L +I +     +  ++IL + ++ + D       +  L++ G 
Sbjct: 1249 CDSLNFTADVACSGAEALEKIQTAEQNQQKFDVILSDWKMPKMDGIELGRQIEALQERGE 1308

Query: 638  GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM---GVGNKGNIR 694
               +  F++  +            V I + + KP+ SS L  ++ R M   G+ +K    
Sbjct: 1309 IAAAPHFVMVTAYDKDEMLAQRQEVDIAASMTKPVSSSTLLDTVSRVMTKEGIASKTKAG 1368

Query: 695  NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
            N +L + S+ + + G ++L+V+DN +N ++A   L   G  V     G++A +L+     
Sbjct: 1369 N-KLDT-SIANGIAGARVLLVEDNAINQEIATELLHMVGVEVTAANNGQEAVDLV-EAQS 1425

Query: 755  FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNF-HVPILAMTAD 813
            FD   MDIQMP MDG++AT+ IR                     N   F  +PI+AMTA+
Sbjct: 1426 FDLVLMDIQMPVMDGYQATQAIR---------------------NTGRFDDLPIIAMTAN 1464

Query: 814  VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
             +    E+CL +GM+ ++ KP    Q+++ +  +  P
Sbjct: 1465 AMSGDKEKCLAAGMNDHLPKPINPNQVFQALVDWIEP 1501


>gi|294055429|ref|YP_003549087.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614762|gb|ADE54917.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
          Length = 885

 Score =  275 bits (703), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 195/605 (32%), Positives = 298/605 (49%), Gaps = 98/605 (16%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           +M   K+A+AA+ AK +FLA +SHEIRTP+NGV+G  ++  +TELD  Q+ Y+ T    G
Sbjct: 225 LMTAMKEAQAANRAKGEFLAAMSHEIRTPINGVIGASELCQETELDAEQRAYLDTVIQCG 284

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
             L+SL+N+VLD +K+E+G+L LE ++FN  A+L++V+  F+G  + KG+EL +   DR+
Sbjct: 285 NTLLSLVNDVLDFSKIEAGQLNLEQLNFNPEAVLEEVIEEFAGTVKKKGIELILSCDDRM 344

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
           P+ +IGDP R +QI  NL+GN++KFTE G I ++ ++VE                     
Sbjct: 345 PKYVIGDPTRLKQIFYNLLGNAVKFTEAGEIVLSAHIVER-------------------- 384

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                       SA L  +   V DTG GI    +  IF+ F Q
Sbjct: 385 ----------------------------SAQLAVIRFKVRDTGIGISETRREAIFSSFTQ 416

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
              S +R +GGTG+GL+I K L   M G +   S    GSTFT    F   S+   E   
Sbjct: 417 EDMSTTRRYGGTGLGLAICKELTELMAGSLSVDSRVGEGSTFTLEVPFELSSTPGIE--- 473

Query: 546 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIA 602
                     +SE   ++ LVVD  P   ++ +   +  G + E  S   + L+ L   A
Sbjct: 474 ------AVPFNSELVDLRVLVVDDNPTNREIYQRMCRGWGYRCETASEGGEALRMLEHYA 527

Query: 603 SGSKIINMILVEQEVWE-KDTSVSTLFVN--NLRKLGCGFQSKLFLLANSISSSRANTST 659
           S      +++++Q++       +++L  N   +R L      K+ LL++S++ S A  + 
Sbjct: 528 STDDPFRLVILDQQMMGVTGLDLASLIRNRQEMRDL------KMILLSSSLNRSEAERAA 581

Query: 660 DGVSIPSVIMKPLRSSMLAASLQRAMGV----GNKGNIRNWELPSMSLRHLLLGRKILIV 715
             + I   + KP++ S+L   +    G+        ++   E    S  H      IL+ 
Sbjct: 582 -SLKIARALAKPIKRSVLLEVILETFGIRSPLCGDLDVSAAEAEKASTLH------ILLA 634

Query: 716 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI 775
           +DN VN  +A   LK+ G  V     G +A E +   H FD   MDIQMP MDG+EAT+ 
Sbjct: 635 EDNEVNQNIAKRRLKKLGHEVTVAVNGHEALEQV-AQHDFDCILMDIQMPGMDGYEATQE 693

Query: 776 IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
           IR +E   + R R             +F   I+AMTA  ++   E C  + MD Y+SKPF
Sbjct: 694 IRNLEIQ-DGRSR-------------HF---IVAMTAHAMEGDAERCFANDMDEYISKPF 736

Query: 836 EAEQL 840
             E+L
Sbjct: 737 RVERL 741


>gi|111226686|ref|XP_642053.2| histidine kinase [Dictyostelium discoideum AX4]
 gi|122126078|sp|Q54YZ9.2|DHKJ_DICDI RecName: Full=Hybrid signal transduction histidine kinase J
 gi|90970717|gb|EAL68114.2| histidine kinase [Dictyostelium discoideum AX4]
          Length = 2062

 Score =  275 bits (703), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 200/609 (32%), Positives = 296/609 (48%), Gaps = 107/609 (17%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K+ AEAA  AKS F+A +SHEIRTPMNG++GM D+ +DTEL   Q++Y+   Q+S  +L+
Sbjct: 1337 KETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYLSMVQSSAGSLL 1396

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            ++IN++LD +K+E+G+LEL+   F+LRA L D L   S ++  K +EL   I+  VP++L
Sbjct: 1397 TIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVPDSL 1456

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            IGDPGR RQI+ NL+GN+IKFT +G + + V          +VE  LS  +         
Sbjct: 1457 IGDPGRLRQIVNNLVGNAIKFTSQGEVDLVV----------KVEKSLSCGE--------- 1497

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                        + L  SV DTG GIP +    IF  F Q   S
Sbjct: 1498 ----------------------------VVLKFSVIDTGIGIPKDKLHLIFEAFSQADGS 1529

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            I+R +GGTG+GL+IS  LV  MKG++  VS    GSTF FTA               Q  
Sbjct: 1530 ITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGSTFEFTA---------------QFP 1574

Query: 550  NQPNS--VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 607
              PN   ++ +   +  L+VD      KV +  +   GI  EV ++     + I   +K 
Sbjct: 1575 TSPNQLPLTEKLNDVHTLIVDDNKSTLKVLKQILSEFGITSEVSNNTQDAFNMIVKATKT 1634

Query: 608  IN---MILVEQEVWEKDTSVSTLFV-NNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
                  I V+ ++    TS+  + V  N+    C  ++K+ +L  S    R    +    
Sbjct: 1635 TKPFEFIFVDAQL---GTSLIDMMVEKNMNH--C--KTKIIMLI-SGGGQRGYPDSSSNF 1686

Query: 664  IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK----ILIVDDNN 719
            I   + KP+  S +   L R      +G  R  ++P    + + L  +    IL+ +DN 
Sbjct: 1687 ITGYLSKPVSPSEIFDILTR------QGITR--QIPKQLCKKIQLTSEIFGDILLAEDNA 1738

Query: 720  VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
            VN ++A   L+++G  V   E G +A        +FD   MD+QMP   GFEAT  IR+ 
Sbjct: 1739 VNQRLAIRLLEKFGHRVQLAENGLQAVA-SSQLRKFDLILMDVQMPHCGGFEATAQIRKR 1797

Query: 780  EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
            EH                      H PI+AMTA  +     +CL +GMD Y+SKP   +Q
Sbjct: 1798 EHE------------------QGIHTPIIAMTAHALARDRVKCLEAGMDDYISKPINPDQ 1839

Query: 840  LYREVSRFF 848
            L   + ++ 
Sbjct: 1840 LKAMIEKYL 1848


>gi|20198952|gb|AAK54091.2|AF362372_1 histidine kinase DhkJ [Dictyostelium discoideum]
          Length = 2062

 Score =  275 bits (703), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 200/609 (32%), Positives = 296/609 (48%), Gaps = 107/609 (17%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K+ AEAA  AKS F+A +SHEIRTPMNG++GM D+ +DTEL   Q++Y+   Q+S  +L+
Sbjct: 1337 KETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYLSMVQSSAGSLL 1396

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            ++IN++LD +K+E+G+LEL+   F+LRA L D L   S ++  K +EL   I+  VP++L
Sbjct: 1397 TIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVPDSL 1456

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            IGDPGR RQI+ NL+GN+IKFT +G + + V          +VE  LS  +         
Sbjct: 1457 IGDPGRLRQIVNNLVGNAIKFTSQGEVDLVV----------KVEKSLSCGE--------- 1497

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                        + L  SV DTG GIP +    IF  F Q   S
Sbjct: 1498 ----------------------------VVLKFSVIDTGIGIPKDKLHLIFEAFSQADGS 1529

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            I+R +GGTG+GL+IS  LV  MKG++  VS    GSTF FTA               Q  
Sbjct: 1530 ITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGSTFEFTA---------------QFP 1574

Query: 550  NQPNS--VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 607
              PN   ++ +   +  L+VD      KV +  +   GI  EV ++     + I   +K 
Sbjct: 1575 TSPNQLPLTEKLNDVHTLIVDDNKSTLKVLKQILSEFGITSEVSNNTQDAFNMIVKATKT 1634

Query: 608  ---INMILVEQEVWEKDTSVSTLFV-NNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
                  I V+ ++    TS+  + V  N+    C  ++K+ +L  S    R    +    
Sbjct: 1635 TKPFEFIFVDAQL---GTSLIDMMVEKNMNH--C--KTKIIMLI-SGGGQRGYPDSSSNF 1686

Query: 664  IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK----ILIVDDNN 719
            I   + KP+  S +   L R      +G  R  ++P    + + L  +    IL+ +DN 
Sbjct: 1687 ITGYLSKPVSPSEIFDILTR------QGITR--QIPKQLCKKIQLTSEIFGDILLAEDNA 1738

Query: 720  VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
            VN ++A   L+++G  V   E G +A        +FD   MD+QMP   GFEAT  IR+ 
Sbjct: 1739 VNQRLAIRLLEKFGHRVQLAENGLQAVA-SSQLRKFDLILMDVQMPHCGGFEATAQIRKR 1797

Query: 780  EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
            EH                      H PI+AMTA  +     +CL +GMD Y+SKP   +Q
Sbjct: 1798 EHE------------------QGIHTPIIAMTAHALARDRVKCLEAGMDDYISKPINPDQ 1839

Query: 840  LYREVSRFF 848
            L   + ++ 
Sbjct: 1840 LKAMIEKYL 1848


>gi|339484541|ref|YP_004696327.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. Is79A3]
 gi|338806686|gb|AEJ02928.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. Is79A3]
          Length = 921

 Score =  275 bits (702), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 192/607 (31%), Positives = 296/607 (48%), Gaps = 94/607 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K+ AEAA  AKS+FLAT+SHEIRTPMNG+LGM ++L+DT+LD  Q  +  T Q+SG+ L+
Sbjct: 260 KESAEAASKAKSEFLATMSHEIRTPMNGILGMTELLLDTQLDKDQHRFAETVQSSGQHLL 319

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL-AVYISDRVPET 368
            +IN++LD +K+ES  +ELE + F+L  +++D L++F+  +  KG+EL A +        
Sbjct: 320 GIINDILDFSKIESDHMELETIDFDLVKLIEDTLTMFAQPADKKGLELIAQFTPPNTAFM 379

Query: 369 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 428
           L GD  R RQII NL+ N+IKFTE+G I +   L+                         
Sbjct: 380 LRGDSFRIRQIIANLLNNAIKFTEQGEIVIRTMLL------------------------- 414

Query: 429 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 488
                          DGS +        L  + + VEDTG GIP     +IF  F Q   
Sbjct: 415 ---------------DGSET--------LTRVSICVEDTGIGIPPVYHEKIFQNFSQADG 451

Query: 489 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 548
           S +R +GGTG+GL+I K L+  M+G I   S P  GS F              E +  Q 
Sbjct: 452 STTRQYGGTGLGLTICKKLLELMEGSIHVESSPGHGSKFWINLRL--------EKSKLQH 503

Query: 549 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL---SQIASGS 605
           +N P+   ++ +G++ALVVD      ++ +  +Q   I VE   D  Q L   +Q  + +
Sbjct: 504 SNFPD--MTKLRGVRALVVDDNQTNREILKLQLQNWQINVECAEDAQQALAYMTQAVAEN 561

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGC--GFQSKLFLLANSISSSRANTSTDGVS 663
           K  ++++++  + + D       +   RK+     F     ++  S  S+ +        
Sbjct: 562 KSFHLVILDMHMPQMDG------LQLARKIHAHPDFSKTRMMMLTSTYSNASQLERQNTG 615

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL--LGRKILIVDDNNVN 721
           I   + KP+R   L   +   MG     +  N E   +S+  L      K+L+ +DN VN
Sbjct: 616 ILRCVNKPVRQKELLDIIIDVMGRDLDNHATNPEFEKVSVSTLTQSFHGKVLLAEDNPVN 675

Query: 722 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
            +VA A L + G   V    G++A   L+  +Q+D   MD QMP MDGFEAT  IR    
Sbjct: 676 QEVAKAMLAKLGLDTVIAHDGQQAL-YLIQNNQYDLILMDCQMPNMDGFEATAHIR---- 730

Query: 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
                           +   N H  I+A+TA+  +   + CL  GM+ ++SKP+  +QL 
Sbjct: 731 ----------------QQFGNSHT-IIALTANATEDDRKRCLDGGMNDFLSKPYSIDQLQ 773

Query: 842 REVSRFF 848
           +++  + 
Sbjct: 774 QKIHHWL 780


>gi|170725193|ref|YP_001759219.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169810540|gb|ACA85124.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1240

 Score =  275 bits (702), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 203/658 (30%), Positives = 314/658 (47%), Gaps = 124/658 (18%)

Query: 216 IGIL--VIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRT 273
           +GIL  V  S+ G IF+ +     KV E    ++E  K+AE A  AKS FLA +SHE+RT
Sbjct: 439 MGILANVFKSMAGRIFEYSTTLEQKVSERTSELVESHKRAEIASKAKSNFLAHMSHEVRT 498

Query: 274 PMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 333
           PMN ++G+  +++ T LD  Q+D++    +S   L++ IN+VLD +K+E+ KL L+   F
Sbjct: 499 PMNAIIGLSQLMLKTSLDKRQRDFMEKVLSSSDVLLNTINDVLDYSKIEANKLTLDEFQF 558

Query: 334 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK 393
           +LR +L  V ++ + K+Q KGVEL + + ++VP   IGDP R  QI+ NL  N++KFTEK
Sbjct: 559 DLRDVLRRVTNISAYKAQSKGVELLLDVDEKVPFHWIGDPTRLGQILINLASNAVKFTEK 618

Query: 394 GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 453
           G + + V L+E                                      Q G  S  +  
Sbjct: 619 GEVVIRVKLLE--------------------------------------QQGQLSTLR-- 638

Query: 454 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKG 513
                    S+ DTG GI     +++F+PF Q+  SI+R +GGTG+GL+I + L   M G
Sbjct: 639 --------FSIIDTGIGIDHHRLNQLFSPFTQIDSSITRKYGGTGLGLAICRQLTELMNG 690

Query: 514 EIGFVSIPNIGSTFTFTAVF--GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRP 571
            I   S  N GS F FT      NGS           N+Q     ++ +GM+ALVVD   
Sbjct: 691 RIWVDSEINKGSQFHFTCKIKPNNGS-----------NSQRWPSYNKLKGMQALVVDDNA 739

Query: 572 IRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLF--- 628
           +  +V    +  LGI+V  V+D    L ++ S +               D+    +F   
Sbjct: 740 MAREVLADILSSLGIEVTTVADGYAALDELESATS-------------SDSPYDVVFLDW 786

Query: 629 -------VNNLRKLGCGFQSK---LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLA 678
                  V   +K+      K     L+  +    R  T     +I  +I KP+ +S + 
Sbjct: 787 NIPAINGVETAKKIENNINIKPPVAMLMVTAYDVDRVETDAHQANIKKIISKPVDASGIH 846

Query: 679 ASLQ---------RAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 729
            SL          R      + N+    L S+ L  +L   +IL+VDD+ +N +VA   L
Sbjct: 847 DSLAEIFFQEKIPRPTSTNRELNL----LGSLDLS-VLRDSRILVVDDSALNREVAREFL 901

Query: 730 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789
              G  V     G++A  ++   + +D   MD+QMP MDG  AT+IIRE     +N+ ++
Sbjct: 902 VDVGIKVSTASNGEQAIRMIKQAN-YDLVLMDVQMPVMDGLTATQIIRE-----DNQYKQ 955

Query: 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                          +PI+AMTA      Y+  L SGM+ +++KP + + LYR ++R+
Sbjct: 956 ---------------LPIIAMTAHASPDDYKRSLDSGMNDHLNKPIDHQLLYRTITRW 998


>gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Coleofasciculus
           chthonoplastes PCC 7420]
 gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Coleofasciculus
           chthonoplastes PCC 7420]
          Length = 684

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 202/601 (33%), Positives = 297/601 (49%), Gaps = 85/601 (14%)

Query: 260 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
           KS+FLAT+SHEIRTP+N V+G+  +L +T+LD  QQD V T + SG+ L+  IN+VLD A
Sbjct: 158 KSEFLATMSHEIRTPLNAVIGLTGILENTKLDAHQQDLVETIRQSGETLLITINDVLDFA 217

Query: 320 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
           K+ESGKLELE   FNLR  L+  + LF+ K+  KG+EL  +I   VP TL+GD  R RQI
Sbjct: 218 KIESGKLELEFKPFNLRDCLETAVDLFAPKAVQKGLELTYFIDPEVPSTLVGDVTRLRQI 277

Query: 380 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
           + NL+ N+IKFT+ G + V          S++VE                   H +    
Sbjct: 278 LINLLSNAIKFTDVGEVSV----------SVKVE-------------------HCYVTNS 308

Query: 440 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
           T NQD  TSP        + ++ SV+DTG GIP +  +R+F  F Q+  S +R +GGTG+
Sbjct: 309 TQNQDSHTSP-------TVCILFSVKDTGIGIPKDRFNRLFQRFSQLDSSTTRQYGGTGL 361

Query: 500 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 559
           GL ISK L   M GEI   S    GSTF+F  V       S          +PN ++ + 
Sbjct: 362 GLIISKQLSEMMGGEIWVDSTLGEGSTFSFCVVLSVDQDAS----------EPNLITPQP 411

Query: 560 Q--GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEV 617
           Q  G + L++D  P   ++     Q  G+         + L+ + +  +  ++ ++++++
Sbjct: 412 QLAGKRVLIIDDNPTSCQILTQQTQCWGMIARSTQSGNEALAWL-NQKEAFDVAIIDRQM 470

Query: 618 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 677
            E +     L ++N      GF+    +L   I      TS       + + KP++   L
Sbjct: 471 PEMNGLTLGLQIHN----QSGFKELPLVLLTPIGKMTTKTSLIERHFAACLPKPIKLGQL 526

Query: 678 AASLQRAMG---VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGA 734
             +L + +G      K    + E     L   L  R IL+ +DN VN KV    LKR G 
Sbjct: 527 YNTLTQVLGRQATAIKSQPASPESGDSPLAQQLPLR-ILLAEDNIVNQKVELLLLKRLGY 585

Query: 735 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSI 794
               V  G++  + +     +D   MD+QMPEMDG  AT+ I +   N++ R        
Sbjct: 586 QADLVSNGQEVLDAI-SRQSYDVILMDVQMPEMDGLTATRYICQ---NYSQR-------- 633

Query: 795 EAYENVSNFHVP-ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIPD 853
                      P I+A+TA+ +Q   E CL++GMD Y+SKP     L     R F  IP 
Sbjct: 634 -----------PWIIALTANAMQEDRETCLKAGMDDYISKPIRQADLI----RVFKMIPL 678

Query: 854 R 854
           R
Sbjct: 679 R 679



 Score = 47.4 bits (111), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 25/135 (18%)

Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM--PPHQFDACFMDIQMPEMDG 769
           ILIVDD   NL++    L   G  V  V  GK+A   +   PP   D   +DI+MPEMDG
Sbjct: 13  ILIVDDIPDNLRILFTMLANQGYEVRRVISGKQALNAVNTDPP---DLILLDIKMPEMDG 69

Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
           +E  + ++  E      +       E ++ V  F V                    G+D 
Sbjct: 70  YEVCQRLKADEKTAEIPVIFLSALDEVWDKVKAFEV-------------------GGVD- 109

Query: 830 YVSKPFEAEQLYREV 844
           Y++KPF+ E++   V
Sbjct: 110 YITKPFQLEEVIARV 124


>gi|430748143|ref|YP_007207272.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
 gi|430019863|gb|AGA31577.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
          Length = 1519

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 184/589 (31%), Positives = 292/589 (49%), Gaps = 87/589 (14%)

Query: 260  KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
            KS+FLA +SHEIRTP+NG++GM ++ +DTEL   QQ+Y+   + S   L+++IN++LD +
Sbjct: 873  KSEFLANMSHEIRTPLNGIIGMTELALDTELTPDQQEYLGMVKLSADHLLTVINDILDFS 932

Query: 320  KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
            K+E+GKL+L+ + F+LR  LDD ++  + ++  KG+ELA +++  VP+ L+GDP R  Q+
Sbjct: 933  KIEAGKLDLDIIDFHLRDALDDTMATLAMRAHKKGLELADHVAADVPDVLVGDPHRLCQV 992

Query: 380  ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
            + NL+GN+IKFTE+G          E V  +EV+                          
Sbjct: 993  VVNLIGNAIKFTERG----------EAVLRVEVQ-------------------------- 1016

Query: 440  TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
                        S S   ++L  +V DTG GIP E Q ++F  F Q   S +R +GGTG+
Sbjct: 1017 ------------SRSEQGVSLHFAVSDTGIGIPPEQQQKLFKAFSQADTSTTRKYGGTGL 1064

Query: 500  GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 559
            GL+IS  LV  M GEI   S    GS F FT  FG          ++    +P  V    
Sbjct: 1065 GLAISARLVQLMGGEIWLESQAGQGSIFHFTLPFGLVCGPV----ARARPVEPEQV---- 1116

Query: 560  QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSKIINMILVEQE 616
             G+  L+VD      ++    +   G++   V+   + +  L++     +   ++L++  
Sbjct: 1117 HGLPVLIVDDNATNRRILEEMLTNWGMKPTTVAGGREAIATLAEARGAGRPFALVLLDAM 1176

Query: 617  VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 676
            +   D          +++      S L +L+++     A    + + + + +MKP+R S 
Sbjct: 1177 MPGMD---GFTLAEQIKQDSALTGSTLMMLSSANRREDAARCQE-LGVATYLMKPIRESS 1232

Query: 677  LAASLQRAMGVGNKGNIRNWE-----LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKR 731
            L  ++   +G          +     +P+ S R      ++L+ +DN +N ++A A LK+
Sbjct: 1233 LLDAIMTTLGASMSDEPYGAQPAAPAMPNGSRRTWKRMLRLLLAEDNAINQRLAMALLKK 1292

Query: 732  YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 791
             G  VV V  G++A    M   +FDA  MD+QMPEMDGFEAT  IR  E           
Sbjct: 1293 QGHQVVVVNNGREALA-AMNGSRFDAVLMDVQMPEMDGFEATAAIRSREAG--------- 1342

Query: 792  VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                     +  H  I+AMTA  ++   + CL +GMD YVSKP   E L
Sbjct: 1343 ---------TGVHTTIIAMTAHALKGDRDRCLDAGMDAYVSKPLRLEDL 1382


>gi|227819691|ref|YP_002823662.1| sensor-regulator protein [Sinorhizobium fredii NGR234]
 gi|227338690|gb|ACP22909.1| putative sensor-regulator protein [Sinorhizobium fredii NGR234]
          Length = 989

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 188/600 (31%), Positives = 290/600 (48%), Gaps = 84/600 (14%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +  AE A +AKS+FLA +SHEIRTPMNGV+G+ ++L  TEL   Q+ YV     S   L+
Sbjct: 336 RDAAEQASIAKSEFLANMSHEIRTPMNGVIGIAELLEGTELSEQQRRYVSIILHSADTLM 395

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            LIN++LD +K+E+G+LELE + F LR  L D L   + ++ DKG+ELA +I   VP+ L
Sbjct: 396 DLINDILDFSKIEAGRLELETIPFVLRDTLGDTLQTLAKRAADKGLELACHIPPEVPDHL 455

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R RQII NL+GN+IKFTE G + V V LV +      ++ E+   ++T  G P A
Sbjct: 456 MGDPTRLRQIIVNLVGNAIKFTENGEVVVDVTLVGQGDHGAHLQFEV---RDTGIGIPEA 512

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                                         Q RIF  F Q   S
Sbjct: 513 Q---------------------------------------------QERIFEAFAQADAS 527

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R +GGTG+GL+I+  L  +M G +   S P +GS FTF A FG           ++  
Sbjct: 528 TTRQYGGTGLGLAIAAQLAEKMGGRMQLDSKPGVGSVFTFAADFGLAPEEGKARPVRE-- 585

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII- 608
                  +E  G + LVVD      ++    +   G+   V +D +  L+ +   S  + 
Sbjct: 586 -------AELHGRRVLVVDDNATNRQILEEIVVNWGMIPIVATDGMAALNALEQASGALP 638

Query: 609 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 668
           ++ L++  +      +S   +    +L  G +    ++ +S            + +  ++
Sbjct: 639 DLALLDVMM----PGMSGFELAACLRLRSGLKDTRIVMMSSAGRPSDEALLQKLDVSRLL 694

Query: 669 MKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL-GRKILIVDDNNVNLKVAAA 727
           +KP++ S L  ++  A+GV  + +    + P+ + RH    G  +L+ +D  VN +VA  
Sbjct: 695 VKPVKQSDLLNAITNALGVSMRED--EGDGPAGAARHRTSPGLTVLLAEDGAVNRQVAVD 752

Query: 728 GLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787
            L + G  VV V  G++A E +     +D   MD+ MP MDG  AT  IR +    + R 
Sbjct: 753 LLTKRGHRVVAVGNGQEAVEAV-ERGGYDLVLMDVHMPVMDGLAATAAIRALIRPESAR- 810

Query: 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                            VPI+A+TA    A  E C+ +GMDGYV+KPF A +L+  V ++
Sbjct: 811 -----------------VPIVALTASATAADRERCVAAGMDGYVTKPFRATELFHVVEQY 853


>gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1245

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 205/616 (33%), Positives = 298/616 (48%), Gaps = 93/616 (15%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            +  A+AAD AKS+FLA +SHEIRTPMN V+GM+ + + TE+   Q+DY+R A  +  +L+
Sbjct: 581  RDSAQAADQAKSEFLANMSHEIRTPMNAVIGMIHLTLKTEMSPKQRDYLRKAGFAADSLL 640

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
             +I+++LD +KVE+GKLELE   F L  +LD V S+   K+ +KG+E  + I+  VP  L
Sbjct: 641  GIIDDILDFSKVEAGKLELEQHQFLLSEVLDTVTSIVGIKAHEKGLEFLLKIAPEVPAQL 700

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            IGDP R  QI+ NL  N++KFT +G IFV +              +L   +N        
Sbjct: 701  IGDPLRLGQILINLCNNAVKFTGQGEIFVFI-------------EQLDCREN-------- 739

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                      + + L  SV D G G+  E   ++FTPF Q   S
Sbjct: 740  --------------------------NRVMLRFSVRDNGIGMTPEQLDKLFTPFTQADAS 773

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R  GGTG+GL+ISK LV  M GEIG  SIP+ GS F FTA FG GSS           
Sbjct: 774  STRRFGGTGLGLAISKQLVLLMGGEIGAESIPDKGSVFFFTACFGIGSSPI--------- 824

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             Q   + S  Q MK LV+D       +       LG + E+ +   + L  +    K  +
Sbjct: 825  LQGPKLPSALQRMKLLVLDDSARSRDIFEGLFYSLGCRAELAASAQEGLGCLERSEKPYD 884

Query: 610  MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN----SISSSRANTSTDGVSIP 665
            ++L++  +   D       V  +  L    Q K+ ++                 DG    
Sbjct: 885  LLLLDDSLSGLDGFAVARQVRRMSPL--HHQPKIIMITGYGDEEAHKQVVEEGLDGCLTR 942

Query: 666  SVIMKPLRSSMLAA--SLQRAMGVGNKGNIRNWELPSMSLRH-LLLGRKILIVDDNNVNL 722
             V ++ L  +++AA  S  R    G+  N    E      R+  L G ++L+V+DN++N 
Sbjct: 943  PVTLRSLFDAVVAAFESDSRTEPAGSPVN----ETAGDKRRYGQLRGMRVLLVEDNDMNQ 998

Query: 723  KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
            +VA   L   G  V   + G  A E L   H+FD   MDIQMP MDG+EA+++IR     
Sbjct: 999  QVACELLTSAGIEVTVADNGHTAVE-LAAQHRFDTVLMDIQMPVMDGYEASRLIR----- 1052

Query: 783  FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                            + +   +PI+AMTA  +    + CL SGM+ YVSKP   ++LY 
Sbjct: 1053 ---------------ADQACRDLPIIAMTAHAMPQDRQRCLESGMNDYVSKPINPQELYS 1097

Query: 843  EVSRF---FPPIPDRS 855
             + R+      IPD+S
Sbjct: 1098 TLERWGRAASGIPDQS 1113


>gi|381151696|ref|ZP_09863565.1| PAS domain S-box [Methylomicrobium album BG8]
 gi|380883668|gb|EIC29545.1| PAS domain S-box [Methylomicrobium album BG8]
          Length = 1176

 Score =  274 bits (700), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 185/616 (30%), Positives = 307/616 (49%), Gaps = 97/616 (15%)

Query: 240  EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 299
            E+  H + + +  AE A   K++FLA +SHEIRTPMNGVLGMLD+L DT++   Q+D + 
Sbjct: 516  EQARHSLEKARNAAEEAAKTKAEFLANMSHEIRTPMNGVLGMLDILKDTDMSYEQRDLLE 575

Query: 300  TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 359
            TA  S ++L+++IN++LD +K+E+GK ELE + FNL A+++++ +L S ++  K +EL  
Sbjct: 576  TAANSAESLLAIINDILDFSKLEAGKCELEQIEFNLPALVEEICALMSVRAHAKELELNC 635

Query: 360  YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSS 419
            ++   +P   +GDP R RQ++ NL+GN++KFTE+G + V V                   
Sbjct: 636  FLPPTLPARWLGDPNRIRQVLVNLVGNAVKFTERGEVSVKVLA----------------- 678

Query: 420  KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 479
                                           ++S+ D   L V ++DTG G+  E Q+ +
Sbjct: 679  -------------------------------QASAGDDSALRVEIKDTGIGMSPEGQTLL 707

Query: 480  FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSST 539
            F PF Q   S +R  GGTG+GLSISK L+  MKG IG  S+   G+ F FT         
Sbjct: 708  FQPFAQADNSTARRFGGTGLGLSISKNLIDLMKGNIGVESVQGKGTCFWFTLPL------ 761

Query: 540  SNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS 599
                  Q ++N      ++  G +ALVVD      K+ RY++Q  G++V    +    L+
Sbjct: 762  ------QPVDNHAAPSLTDLSGKRALVVDDNDTNRKILRYYLQHWGMRVSEADNAPAALT 815

Query: 600  QIASGS---KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
            ++ + +   +  +++L +  + + D       +     +     +   LL++    S A+
Sbjct: 816  ELQTAALKNEAYDILLSDLHMPDMDGYALARAIATFPSIAA---TPRLLLSSGGMGSEAD 872

Query: 657  TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR----NWELPSMSLRHLLLGRKI 712
                G +    ++KP+R + L  ++  A+    +  +       ELP          ++I
Sbjct: 873  RLALGFA--QSLLKPVRQAQLLEAIASALHAPLRKTLSPIKIAEELPDYG------SKQI 924

Query: 713  LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEA 772
            L+V+DN VN KV  A L ++       E G++A + L     +D  FMD QMP MDG+EA
Sbjct: 925  LVVEDNKVNQKVILAMLGKFRCTPDLAENGREALDKLA-QKTYDLVFMDCQMPVMDGYEA 983

Query: 773  TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832
             +++R       NR           E+      P++A+TA       E+CL +GMD ++S
Sbjct: 984  ARLLR-------NR-----------ESPLPVKTPVVALTAHAAAGEREKCLAAGMDDFLS 1025

Query: 833  KPFEAEQLYREVSRFF 848
            KP   ++L   ++R+ 
Sbjct: 1026 KPIVRQELAEALARWL 1041


>gi|83312537|ref|YP_422801.1| sensor protein gacS [Magnetospirillum magneticum AMB-1]
 gi|82947378|dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1]
          Length = 1117

 Score =  274 bits (700), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 182/611 (29%), Positives = 301/611 (49%), Gaps = 100/611 (16%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           + E K+ AEA +  KS+FLAT+SHEIRTPMNGV+GM  +L+DT L   Q+ +  T + SG
Sbjct: 466 LREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFAETIRDSG 525

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
           ++L+++IN++LD +K+E+GKL+L+   F L  +++ V+ + + ++  KG+E+A  I  R+
Sbjct: 526 ESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRL 585

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
              +  DPGR RQ++ NL GN++KFTEKG + + V L+                      
Sbjct: 586 RMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVSLL---------------------- 623

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                             DG  +P  +           V DTG GIP EAQ R+F+ F Q
Sbjct: 624 ------------------DGPDAPAMAR--------FDVRDTGIGIPPEAQGRLFSMFSQ 657

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
           V  S +R +GGTG+GL+IS+ L   M GE+G  S    GS F  T               
Sbjct: 658 VDASTARRYGGTGLGLAISRRLAELMGGEVGVESAVGRGSRFWITLPL------------ 705

Query: 546 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
            ++    ++   +  G + LVVD  P+   V    ++  G++V    D    + ++   +
Sbjct: 706 -ELLAPQSAAPPDLSGHRVLVVDDNPVNCDVIERQLRAFGVEVHACLDAGSGMGELTRAA 764

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKL--GCGFQSKLFLLANSISSSRANTSTDGVS 663
            +        EV   D+ +  +  + + ++       +   ++  S     A+ +    +
Sbjct: 765 AMGT----PWEVAVVDSQMPVVTGSEMVRMIHAIPMLAGTRIVVTSSQGMPADQNDGQPA 820

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKG-----NIRNWELPSMSLRHLLLGRKILIVDDN 718
           I + + KPLR S L  ++ R +G+         +   ++    + + L    +IL+ +DN
Sbjct: 821 IDAFLHKPLRQSTLLDTIGRVLGLTGPAERPADHAEEYKASEPAAKRL----RILVAEDN 876

Query: 719 NVNLKVAAAGLKRYGAAVVCVERGKKATEL--LMPPHQFDACFMDIQMPEMDGFEATKII 776
            VN +VA   L++ G  V  V  G +A E   L+P   +D   MD+QMPEMDG EAT+ I
Sbjct: 877 PVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLP---YDVVLMDVQMPEMDGLEATRAI 933

Query: 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
           R +                    ++   VPI+AMTA+ ++   + C  +GMDGY+SKP +
Sbjct: 934 RALP-------------------LAAAQVPIVAMTANAMRGDDQMCFDAGMDGYISKPID 974

Query: 837 AEQLYREVSRF 847
             +L   ++++
Sbjct: 975 RHKLAEALAKY 985


>gi|262171619|ref|ZP_06039297.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
 gi|261892695|gb|EEY38681.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
          Length = 1325

 Score =  274 bits (700), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 195/610 (31%), Positives = 305/610 (50%), Gaps = 101/610 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL++  +AAD    AK  FLA +SHEIRTPMN +LGM  + ++T+LD TQ+ YV     S
Sbjct: 592  ELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + F+L  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT++G I ++  +                      
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARV---------------------- 749

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                          +  N+              + L+ +V+DTG GI  E  + +F  F 
Sbjct: 750  --------------RQLNEQQ------------VMLLFAVKDTGIGIAQEKLNDLFNAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQISVHSEEGKGSTFEFSVVCGLQEAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      ++    G+   + LVVD       +    +  +   V  VS+  + LS++
Sbjct: 842  ----------IAQPLYGLANKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSEL 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+  +   W          +  ++ LG    +K FL+      I+    N+ 
Sbjct: 892  Q--HKPFDMLFAD---WNMPGMNGIELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 I ++I+KP+  S L  ++  + G+ +  + +N ELP  S R    G+K+L+V+DN
Sbjct: 947  L----IDALIVKPVNPSNLLDAIVTSYGIDHVRHKQN-ELPQHS-RPNFTGQKLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G +V     G++A E L     FD   MD+QMP MDG  ATK IR 
Sbjct: 1001 EVNQEVALGLLEETGLSVTIANNGQEALEKL-ENADFDLVLMDMQMPVMDGITATKHIRT 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +               ++PI+AMTA+ + A  E CL+ GM+G++SKP E +
Sbjct: 1060 -----NGRWK---------------NLPIVAMTANAMAADIERCLQVGMNGHLSKPIEVD 1099

Query: 839  QLYREVSRFF 848
            + Y+ + +F 
Sbjct: 1100 KFYQVLKQFL 1109


>gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 992

 Score =  274 bits (700), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 195/610 (31%), Positives = 298/610 (48%), Gaps = 104/610 (17%)

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           + ++ AE A+ AK+ FLAT+SHEIRTPMNGV+GM  +L+DT+LD  Q+ +  T + S ++
Sbjct: 346 QAQQVAERANQAKAAFLATMSHEIRTPMNGVIGMTGLLLDTQLDPEQRHFATTIRDSAES 405

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L+++IN++LD +K+E+GKL+LE+  F L  +++ ++ + + ++  KG+E+A  +   +P 
Sbjct: 406 LLTVINDILDFSKLEAGKLDLESTDFELVGLVESIVDILAPRAHAKGIEIASMVDPDLPA 465

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 427
            + GDPGR RQI+ NL GN+IKFT  G I            SIEV  E S          
Sbjct: 466 WVRGDPGRLRQILMNLAGNAIKFTSHGGI------------SIEVRDETSP--------- 504

Query: 428 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487
                           DG+             L   V DTG GIP +A  R+F+ FMQV 
Sbjct: 505 ----------------DGAG-----------RLRFDVRDTGIGIPQDAIGRLFSMFMQVD 537

Query: 488 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 547
            S +R +GGTG+GL+ISK L   M G IG  S P  GS F F+  F             Q
Sbjct: 538 ASTARRYGGTGLGLAISKRLTEMMGGTIGVESTPGAGSLFWFSLPF-------------Q 584

Query: 548 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 607
           M         +  G + LVVD  PI   V    ++  G+ V   +D    L+++   +  
Sbjct: 585 MVETAPPQRPDLAGRRILVVDDSPINRDVLERQLRGFGVIVASCADAESALAELGRAA-- 642

Query: 608 INMILVEQEVWEK---DTSVSTLFVNNLRKLG-CGFQSKLFLLANSISSSRANTSTDGV- 662
                     WE    D  +  +  ++L  +G    +  L  +   I+SS+  +  DG  
Sbjct: 643 -----ATGTPWEAAIIDARMPGVTGSDL--IGRIRAEPVLAPMGLIIASSQGLSPEDGSP 695

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-----ELPSMSLRHLLLGRKILIVDD 717
              + I KPLR   + A L R +G+ +   +++      E      R L    +IL+ +D
Sbjct: 696 KADAFIHKPLRRQTILAVLARVLGLPHDPGLQDSPESEPEAIPRPARRL----RILVAED 751

Query: 718 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
           N VN +VA   L++ G +V     G +A E +     +D   MD+QMPEMDG +AT  IR
Sbjct: 752 NPVNQQVAVGLLRKLGHSVDVAADGAEAVEAVR-SRPYDLVLMDVQMPEMDGLQATAAIR 810

Query: 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
            +                         VPI+AMTA+ ++     CL +GMD Y+SKP + 
Sbjct: 811 ALTGGAE-------------------RVPIVAMTANAMRGDDRMCLDAGMDRYISKPIDR 851

Query: 838 EQLYREVSRF 847
            +L   ++++
Sbjct: 852 RKLMEVLAQY 861


>gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 1135

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 192/608 (31%), Positives = 299/608 (49%), Gaps = 89/608 (14%)

Query: 244 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
             + E K  AEAA+ AKS FLA +SHEIRTP+N ++GM +++MDT+L V Q+DY+R    
Sbjct: 413 QALREAKDAAEAANRAKSDFLANMSHEIRTPLNAIIGMTELVMDTDLKVAQRDYLRMVLE 472

Query: 304 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 363
           SG++L+ +IN++LD +K+E+G+L ++   F LR  L D +   S ++  K +ELA ++S 
Sbjct: 473 SGESLLGIINDILDFSKIEAGRLHVDEQPFRLRDSLGDTMKSLSNRAHRKKLELAFHVSP 532

Query: 364 RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 423
            VP+ + GD  R RQ+I NL+GN++KFTE+G          EVV  + VE          
Sbjct: 533 DVPDEVRGDAVRVRQVIINLLGNALKFTERG----------EVVLDVSVE---------- 572

Query: 424 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483
                                       S +A+ + L   V+DTG GI  +    IF  F
Sbjct: 573 ----------------------------SRTAEQVTLHFKVQDTGIGIAKDKFESIFEAF 604

Query: 484 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 543
            Q   S +R +GGTG+GL+IS  LV  M+G+I   S    GSTF FT   G       E 
Sbjct: 605 EQADSSTTRRYGGTGLGLAISARLVELMQGKIWVESEVGQGSTFHFTLNLG----VEAEG 660

Query: 544 NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC---LSQ 600
           + Q +  +P     +  G++ L+VD      ++        G++  + +  ++    L  
Sbjct: 661 SVQPLAQEP-----QLHGLRVLIVDDNQTNRRILEELTLLWGMRPRIAAGAIEARRELQH 715

Query: 601 IASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 660
                + I +I+ + ++  +D    T  + +L  +     +   L+  S       +   
Sbjct: 716 AIDQGEPIRLIITDAQMPGEDGFSLTASIRSLENM----PAVEILMLTSGDRLEDLSRCQ 771

Query: 661 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKG--NIRNWELPSMSLRHLLLGRKILIVDDN 718
            + I   ++KP++ S L  S+   MG   +         +P  S       R+IL+ +D+
Sbjct: 772 QLGIAGYLIKPVKQSELYNSIVGIMGQAPRAVPMASAMAVPERSAN----SRRILLAEDS 827

Query: 719 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             N K+A   L+R+G  VV    G +A E       FD   MD+QMPE+DG EAT  IRE
Sbjct: 828 LANQKLALGLLERWGHRVVVASNGIEAIERYR-SESFDLILMDVQMPELDGNEATMAIRE 886

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
           +E       R GE            H+PI+AMTA  +Q   E+CL++GMD Y+ KP  A 
Sbjct: 887 IER------RTGE------------HIPIVAMTAHALQGDREQCLKAGMDDYLMKPIRAR 928

Query: 839 QLYREVSR 846
           QL++ + +
Sbjct: 929 QLFQMIEQ 936


>gi|254410456|ref|ZP_05024235.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
 gi|196182662|gb|EDX77647.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
          Length = 2020

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 209/658 (31%), Positives = 329/658 (50%), Gaps = 68/658 (10%)

Query: 209  LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 268
            L A++  +GI +  +    + +    R  ++      + + K++AE A+ AKS+FLA +S
Sbjct: 1263 LEAVAAQVGIALAQA---QLLEQEKQRREELTLKNLALHKAKREAEVANRAKSEFLAMMS 1319

Query: 269  HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 328
            HEIRTPMN V+GM  +L+DTEL   QQD+  T  +SG+AL+++IN++LD +K+ESGKLEL
Sbjct: 1320 HEIRTPMNAVIGMAGLLLDTELTSQQQDFANTISSSGEALLTIINDILDFSKIESGKLEL 1379

Query: 329  EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI--------SDRVPETLIGDPGRFRQII 380
            E   F++   +++ L L + ++  KG+ELA  I          + P T++GD  R RQI+
Sbjct: 1380 EEHPFDVHVCIEEALDLVASQATAKGLELAYLIEPFGFAQGQPQTPATVVGDITRLRQIL 1439

Query: 381  TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 440
             NL+ N++KFTE+G + V+V     +  ++  E   +       G   A+      G   
Sbjct: 1440 VNLLSNAVKFTERGEVVVSV-----ISRALSGEAGGAEGAEGAEGAEGAEGAEGAGGAGG 1494

Query: 441  FNQDGSTSPFKSSSAD-LINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
                G   P +   A+    L  +V DTG GIP +  +R+F PF QV  S++R +GGTG+
Sbjct: 1495 AEGAGGAVPVEHLEAEQTYELQFTVRDTGIGIPRDRMNRLFKPFSQVDASMTRNYGGTGL 1554

Query: 500  GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS-- 557
            GL+ISK L  RM G +   S    GSTF FT V               + + PNSV++  
Sbjct: 1555 GLAISKRLSERMGGRLWAESEVGKGSTFYFTIV---------------VKSDPNSVTAEL 1599

Query: 558  -----EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMIL 612
                 E +G + LVVD      ++     Q  G++V   +   Q L+ +A  S+  ++ +
Sbjct: 1600 DTPQPELRGKRLLVVDDNATNRQIITLQAQSWGMEVTTAASGEQALNWLAD-SEPFDLAV 1658

Query: 613  VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL 672
            ++ ++ E D     L    ++ L    Q  L +L+ S+         D  +  + + KP+
Sbjct: 1659 LDWQMPEMDGLTLAL---QIQALPNNEQLPLVMLS-SVGRQTPYQPDDMPNFAAFLTKPI 1714

Query: 673  RSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR---KILIVDDNNVNLKVAAAGL 729
            + S L       +G   + ++R  +  S +L      R    IL+V+D  VN KVA   L
Sbjct: 1715 KQSQLYNIFVTILG-RRRISVRPGDRLSGTLEAEFAQRLPLSILLVEDVAVNQKVARQML 1773

Query: 730  KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789
            +R G        G++A E L     +   FMD+QMPEMDG EAT+ IR            
Sbjct: 1774 QRLGYRADVANNGQEALESLR-RKSYQVVFMDVQMPEMDGLEATRRIRA----------- 1821

Query: 790  GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                    E  S     I+AMTA  +Q   E+CL+ GM+ Y+SKP   E L + ++ +
Sbjct: 1822 --------EWSSACQPWIIAMTAHAMQGDREQCLQVGMNDYISKPIRPEALVQALTTY 1871


>gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
 gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
          Length = 2059

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 192/609 (31%), Positives = 292/609 (47%), Gaps = 107/609 (17%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K+ AEAA  AKS F+A +SHEIRTPMNG++GM D+ +DTEL   Q++Y+   Q+S  +L+
Sbjct: 1346 KETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYLTMVQSSAGSLL 1405

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            ++IN++LD +K+E+G+LEL+   F+LRA L D L   + ++  KG+EL   I+  +P++L
Sbjct: 1406 TIINDILDFSKIEAGRLELDQSDFSLRAHLYDTLKTLAWRAHQKGLELVCDIASDIPDSL 1465

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GDPGR RQI+TNL+GN+IKFT +G + + V + + +                       
Sbjct: 1466 VGDPGRLRQIVTNLVGNAIKFTSEGEVDLVVKIDKYI----------------------- 1502

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                          DG            + L  SV D+G GIP E    IF  F Q   S
Sbjct: 1503 --------------DGE-----------VLLRFSVIDSGIGIPKEKLHLIFEAFSQADGS 1537

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            I+R +GGTG+GL+IS  LV  MKG++  VS P  GSTF FTA F              ++
Sbjct: 1538 ITRRYGGTGLGLTISTRLVELMKGKLRVVSKPGKGSTFEFTAQF---------PTKPDLD 1588

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSK 606
                 +  + + +  LVVD      KV    +   GI  +      D  + +++ A  ++
Sbjct: 1589 LGETPIGVKLKDVHTLVVDDNKNTVKVLCQMLFEFGITSDSTDNGQDAYKMMTKAAQSNR 1648

Query: 607  IINMILVEQEVWEKDTSVSTLFV-------NNLRKLGCGFQSKLFLLANSISSSRANTST 659
                + ++ ++   DT++  L          N+  L CG               R     
Sbjct: 1649 PYEFLFIDAQI---DTNIVDLISEDPKLSKTNVIMLICG------------GGQRGCPEN 1693

Query: 660  DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 719
                I   + KP+  S +   LQ+  G+  +  +     P       + G  IL+ +DN 
Sbjct: 1694 ASSLIGGYLSKPVSPSEMLEILQK-QGISRQSKVCKKIQPISE----IFG-DILLAEDNV 1747

Query: 720  VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
            VN ++A   L+++G  V   E G +A       H FD   MD+QMP M GFEAT  IR++
Sbjct: 1748 VNQRLAVRLLEKFGHKVTLAENGLQAVAACEIKH-FDLILMDVQMPHMGGFEATAQIRKL 1806

Query: 780  EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
            E N                     H PI+AMTA  +     +C+ +GMD Y+SKP   +Q
Sbjct: 1807 ESN------------------EGIHTPIIAMTAHALARDRVKCIEAGMDDYISKPINPDQ 1848

Query: 840  LYREVSRFF 848
            L   + ++ 
Sbjct: 1849 LKSMIEKYL 1857


>gi|389578386|ref|ZP_10168413.1| PAS domain S-box [Desulfobacter postgatei 2ac9]
 gi|389400021|gb|EIM62243.1| PAS domain S-box [Desulfobacter postgatei 2ac9]
          Length = 1630

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 198/649 (30%), Positives = 314/649 (48%), Gaps = 105/649 (16%)

Query: 234  NRIAKVEEDYHGMMELKKK----AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE 289
            N++  V E       L K+    AE A  AKS+FLA +SHEIRTPMNG++GM  +L+DT+
Sbjct: 931  NKLITVNEHLKNQTALAKRMAAGAEMATRAKSEFLANMSHEIRTPMNGIIGMTGLLLDTD 990

Query: 290  LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGK 349
            L   Q+ +    +AS  AL++LIN++LD +K+E+GKL++E + F LR  LDD   + + K
Sbjct: 991  LSDEQRLFTGNVKASADALLTLINDILDFSKIEAGKLDMEILDFELRPFLDDFAHMMALK 1050

Query: 350  SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 409
            + +K +EL   +S  VP  L GDPGR RQI+TNL  N+IKFT  G + +  +L       
Sbjct: 1051 AHEKDLELICEVSPEVPGQLQGDPGRLRQILTNLTDNAIKFTNAGEVVIQAHL------- 1103

Query: 410  IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469
                                                     K  + + + +  SV+DTG 
Sbjct: 1104 -----------------------------------------KHQTKEEVLIYFSVKDTGV 1122

Query: 470  GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS-IPNI----- 523
            GI  E Q  +F  F QV  SI+R +GGTG+GL+ISK L   M G+IG +S +P I     
Sbjct: 1123 GIAPEKQGHLFEQFTQVDASITRKYGGTGLGLAISKKLAQLMGGDIGVISPVPEINKLAS 1182

Query: 524  --------GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAK 575
                    G  F FTA F    S++   + Q++   P       + ++ L+VD      +
Sbjct: 1183 RPSDSLHSGCLFWFTAQFKQPPSSAETGHEQKIMPDP------LKNVRILIVDDNRTNRE 1236

Query: 576  VSRYHIQRLGIQVEVVSDQLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNL 632
                 +  +G +V   +D    L +I   A  +++ ++ +++ ++         L +   
Sbjct: 1237 TLVRQLVGMGAKVSEAADGKAALEKIKRTAQENRLYDLAILDIQMPGMTGDKLGLAI--- 1293

Query: 633  RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN 692
            +K   G   KL L+  SI           +     + KP+R S L+ +L   +  G  G 
Sbjct: 1294 KKEAFGADIKLVLML-SIGRRGDARYFQSIGFSGYLTKPVRYSELSDTLASVLSGGQAGK 1352

Query: 693  IRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--M 750
              N  +  ++        +IL+ +DN  N  VA   L+++G +V  V  G +A   L  +
Sbjct: 1353 EENARIRHLNGEIKQPHVRILLAEDNITNQIVAKGILEKFGYSVDAVANGIEAIRALEKI 1412

Query: 751  PPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM 810
            P   +D   MD+QM E+DG +AT++IR                     NV N ++P++AM
Sbjct: 1413 P---YDMVLMDLQMSELDGLKATRMIRNTA-----------------SNVINPNIPVVAM 1452

Query: 811  TADVIQATYEECLRSGMDGYVSKPFE----AEQLYREVSRFFPPIPDRS 855
            TA+ +    E+CL +GM+ Y+SKP +    AE++ + ++R  P  P+RS
Sbjct: 1453 TANAMAGDREKCLNAGMNDYISKPVDPIILAEKIEKWINRIQPRNPERS 1501


>gi|385798974|ref|YP_005835378.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens
           DSM 2228]
 gi|309388338|gb|ADO76218.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens
           DSM 2228]
          Length = 921

 Score =  273 bits (699), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 195/616 (31%), Positives = 312/616 (50%), Gaps = 97/616 (15%)

Query: 247 MELKK---KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
           +ELK+   KA  A  AKS+FL+T+SHEIRTPMN ++GM ++L +TEL   QQ Y+   Q 
Sbjct: 387 LELKQARDKAMEASRAKSEFLSTMSHEIRTPMNSIIGMAELLQETELSEQQQKYINIFQN 446

Query: 304 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 363
           +G++L++LIN++LD +K+E+G++ELEA  FNL   ++++  + S ++  KG+EL + I+ 
Sbjct: 447 AGESLLTLINDILDLSKIEAGRIELEAEKFNLVETVENIAEMISLRAFKKGLELPLRIAA 506

Query: 364 RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 423
            VPE +IGD  R RQI+ NL+GN++KFTEKG +F+ + +                     
Sbjct: 507 EVPECVIGDSERIRQILINLLGNAVKFTEKGQVFLDLRI--------------------- 545

Query: 424 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483
                                   S FKS   D   +I +++DTG GI    Q +IF  F
Sbjct: 546 -----------------------DSEFKSK--DQKQVIFAIKDTGIGIEKAKQKQIFDSF 580

Query: 484 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 543
            Q   S +R +GGTG+GL+ISK LV  M G+I   S P +GSTF F+       +     
Sbjct: 581 TQADSSSTRKYGGTGLGLTISKQLVELMGGKIWLKSTPQLGSTFYFSLPLKIVENNFKSQ 640

Query: 544 NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 603
            SQ  N         F+  K LVVD  P    + +  +   GI++    +Q + L++IA 
Sbjct: 641 KSQTRN---------FEQYKILVVDDNPTNIFILKEILAERGIEIGTAQNQQEALTEIAQ 691

Query: 604 GSKI---INMILVEQEVWEK---DTSVSTLFVNNLRKLGCGFQ-SKLFLLANSISSSRAN 656
             +      +IL++  + +K   DTS         +K+   F    L ++  S + +  N
Sbjct: 692 SIEAQAPYQIILMDNFMPQKNGLDTS---------KKIREKFDLPNLQIIILSSAYAEKN 742

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGV--GNKGN--IRNWELPSMSLRHLLLGRK- 711
                  I   +MKP+R   L + L++A       K N   +  E   +S + L    K 
Sbjct: 743 LQNREGLINDFMMKPVRKKDLFSLLEKAAAKIENKKANDFKQKAEKEKVSQKDLTTANKE 802

Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
           +LIV+DN  N  +  A LK+    +   + G +A E       +D   MDIQMPEM+G++
Sbjct: 803 LLIVEDNPDNRFLIKAFLKKKNYQLDIAKNGIEAVEKF-KSKLYDLVLMDIQMPEMNGYQ 861

Query: 772 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
           A   IR+ E   N +I+                 P++A+TA  + +  E+ L+ G D ++
Sbjct: 862 AVNEIRKWEKE-NKKIK----------------TPVVALTAYALDSDKEKALKEGFDDHL 904

Query: 832 SKPFEAEQLYREVSRF 847
           +KP + ++LY+ ++++
Sbjct: 905 TKPLKKDKLYQLIAKY 920


>gi|428215970|ref|YP_007089114.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
 gi|428004351|gb|AFY85194.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
          Length = 1277

 Score =  273 bits (698), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 212/669 (31%), Positives = 325/669 (48%), Gaps = 79/669 (11%)

Query: 200  RFKQKAPWP---LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAA 256
            RF+   P     L A++  +GI +  S +    +A  +++A   E    + + ++ AE A
Sbjct: 660  RFRHWEPQEIELLEAVAVQLGIALAQSQLLERERAARSQLA---EQNQSLKQARESAEVA 716

Query: 257  DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVL 316
            + AKS+FLAT+SHEIRTPMN V+GM  +L+D  L   Q+DY+ T + SG AL+++IN++L
Sbjct: 717  NRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMNLTEEQRDYIDTIRTSGDALLTIINDIL 776

Query: 317  DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 376
            D +K+ESGKLELE   FNL+  +++ L LF+ K+ +KG+EL   I  R P+ +I D  R 
Sbjct: 777  DFSKIESGKLELENHPFNLQTCIEEALDLFAPKAAEKGLELLYQIEVRTPQKIISDVTRL 836

Query: 377  RQIITNLMGNSIKFTEKGHIFVTVYL--VEEVVDSIEVETELSSSKNTLSGYPVADRCHS 434
            RQI+ NL+GNS+KFT  G I V+V    +       ++ T L S+       P       
Sbjct: 837  RQILVNLIGNSVKFTHTGEIVVSVNATRLTSPTSQAKLATPLVSADPGNGDKP------- 889

Query: 435  WKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 494
              G +  + D        S         S+ DTG GIP   + R+F PF QV  S +R  
Sbjct: 890  -SGLQPRSPD-------QSPPVAYEFQFSIRDTGIGIPSHRRDRLFLPFSQVDASTTRQF 941

Query: 495  GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNS 554
            GGTG+GL+I K L   M G +   S   +GSTF FT +  +    ++  +  Q      S
Sbjct: 942  GGTGLGLAICKRLSELMGGRMWIESEEGVGSTFYFTLIALSNPKANHSPDYHQ------S 995

Query: 555  VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVE 614
              S  +G K L+VD      ++     Q  G+             Q ASGS+ ++++ V 
Sbjct: 996  DRSLLKGKKLLIVDDNATNRQILLKQTQNWGM----------FPHQAASGSEALDLLEVS 1045

Query: 615  QEVWEKDTSVSTLFVNNLRKLGCG--------FQSKLFLLANSISSSRANTSTDGVSI-- 664
                  D ++  + +  +  L           +QS   ++  S+    +    DG+SI  
Sbjct: 1046 NHF---DLAILDMQMPEMDGLTLAARIQSQPQWQSLPLVMFTSMGKPES-LEVDGISIKF 1101

Query: 665  PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL-------LGRKILIVDD 717
             + I KP++ S L  +L + +      +   +E    S + L+       +  +IL+ +D
Sbjct: 1102 AAFINKPIKQSQLYNTLIQILDETPPSSPVKYEPLPQSKKSLINADMAKQIPLRILLAED 1161

Query: 718  NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
            N VN KVA   L R G        G +  E L     +D   MD+QMPEMDG EAT+ I 
Sbjct: 1162 NIVNQKVALRILDRMGYRADVANNGLEVLEALQ-RLSYDVILMDVQMPEMDGLEATRQI- 1219

Query: 778  EMEHNFNNRIRRGEVSIEAYENVSNFHVP-ILAMTADVIQATYEECLRSGMDGYVSKPFE 836
                             + Y      + P I+AMTA+ +Q   E CL +GMD Y++KP  
Sbjct: 1220 ----------------CKKYGEGLQLNKPKIIAMTANAMQGDREICLAAGMDDYITKPIR 1263

Query: 837  AEQLYREVS 845
             E+L + +S
Sbjct: 1264 LEELIKVLS 1272


>gi|167622660|ref|YP_001672954.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
            HAW-EB4]
 gi|167352682|gb|ABZ75295.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
            HAW-EB4]
          Length = 1761

 Score =  273 bits (698), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 193/630 (30%), Positives = 304/630 (48%), Gaps = 114/630 (18%)

Query: 231  ATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL 290
            A +  + ++ E+   + + K  A+AA+ AKS FLA +SHEIRTPMN ++GM  + + TEL
Sbjct: 1011 ANITSLKQLSEE---LKQAKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTEL 1067

Query: 291  DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKS 350
            +  QQ+YV     + K+L+ +IN++LD +K+E+GKL++E+V F L  +L+D+  +FS K+
Sbjct: 1068 NRKQQNYVLKIDRASKSLLGIINDILDFSKIEAGKLDIESVPFQLDTLLEDLSDMFSVKA 1127

Query: 351  QDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 410
             DK +EL   ++  +P  L GDP R  Q++ NLM N+IKFTE+G + +++  +E + D  
Sbjct: 1128 TDKRLELLFAVAPNIPRQLQGDPLRLSQVLINLMSNAIKFTEQGEVLLSISQLERIEDD- 1186

Query: 411  EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
                                                           I L  SV D G G
Sbjct: 1187 -----------------------------------------------IVLRFSVRDNGIG 1199

Query: 471  IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
            +  E + R+F  F Q   S +R +GGTG+GL+ISK LV  M GEIG  S           
Sbjct: 1200 LTEEQRERLFKSFSQADTSTTRKYGGTGLGLAISKQLVELMGGEIGVES----------- 1248

Query: 531  AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 590
              FGNGSS       +  NNQ   V  E +GM+ LV D       + R  ++ +G +V+ 
Sbjct: 1249 -QFGNGSSFYFSVKLKVANNQLLKVKREIEGMRILVADDNATARDIMRTTLESMGFKVDA 1307

Query: 591  VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS- 649
            V           SG++ I           + T      ++ L     G ++   +L+   
Sbjct: 1308 VK----------SGAEAIEHC--------QHTDYPVALIDWLMPEMNGIEAAQKILSGKE 1349

Query: 650  ------ISSSRANT----STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI-RNWEL 698
                  I S+ AN       +   I S I KP+ +S L   +  ++G      + R    
Sbjct: 1350 HPPKILIVSAHANAEFIEQVEHSDIASYITKPISASRLLDGIMSSLGQNGAMVVRRKGSD 1409

Query: 699  PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
             S  L   L G+++L+V+DN++N +VA   L++ G  +   E G+ A E L     FD  
Sbjct: 1410 ISQELLLQLQGKRVLLVEDNDMNQEVATEFLEQVGVVLSIAENGQVALEKL-ATQSFDLV 1468

Query: 759  FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
             MD QMP MDG++AT+ +R+M              +E         +P++AMTA+ +   
Sbjct: 1469 LMDCQMPVMDGYQATRELRKMP------------GLE--------KLPVIAMTANAMAGD 1508

Query: 819  YEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             E CLR GM+ +++KP E  +LY  + ++ 
Sbjct: 1509 KEMCLRVGMNDHIAKPIEVARLYSTLLQYL 1538


>gi|258621553|ref|ZP_05716586.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
            VM573]
 gi|258586171|gb|EEW10887.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
            VM573]
          Length = 1325

 Score =  273 bits (698), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 194/610 (31%), Positives = 305/610 (50%), Gaps = 101/610 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL++  +AAD    AK  FLA +SHEIRTPMN +LGM  + ++T+LD TQ+ YV     S
Sbjct: 592  ELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + F+L  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT++G I ++  +                      
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARV---------------------- 749

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                          +  N+              + L+ +V+DTG GI  E  + +F  F 
Sbjct: 750  --------------RQLNEQQ------------VMLLFAVKDTGIGIAQEKLNDLFNAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQISVHSEEGKGSTFEFSVVCGLQEAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      ++    G+   + LVVD       +    +  +   V  VS+  + LS++
Sbjct: 842  ----------IAQPLYGLANKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSEL 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+  +   W          +  ++ LG    +K FL+      I+    N+ 
Sbjct: 892  Q--HKPFDMLFAD---WNMPGMNGIELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 I ++I+KP+  S L  ++  + G+ +  + +N ELP +  R    G+K+L+V+DN
Sbjct: 947  L----IDALIVKPVNPSNLLDAIVTSYGIDHVRHKQN-ELP-LHTRPNFAGQKLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G +V     G++A E L     FD   MD+QMP MDG  ATK IR 
Sbjct: 1001 EVNQEVALGLLEETGLSVTIANNGQEALEKL-ENADFDLVLMDMQMPVMDGITATKHIRT 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +               ++PI+AMTA+ + A  E CL+ GM+G++SKP E +
Sbjct: 1060 -----NGRWK---------------NLPIVAMTANAMAADIERCLQVGMNGHLSKPIEVD 1099

Query: 839  QLYREVSRFF 848
            + Y+ + +F 
Sbjct: 1100 KFYQVLKQFL 1109


>gi|258627567|ref|ZP_05722344.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
            VM603]
 gi|258580149|gb|EEW05121.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
            VM603]
          Length = 1325

 Score =  273 bits (698), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 193/610 (31%), Positives = 304/610 (49%), Gaps = 101/610 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL++  +AAD    AK  FLA +SHEIRTPMN +LGM  + ++T+LD TQ+ YV     S
Sbjct: 592  ELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + F+L  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT++G I ++                         
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVIS------------------------- 746

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                   +  +  +   + L+ +V+DTG GI  E  + +F  F 
Sbjct: 747  -----------------------ARVRQINEQQVMLLFAVKDTGIGIAQEKLNDLFNAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQISVHSEEGKGSTFEFSVVCGLQEAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      ++    G+   + LVVD       +    +  +   V  VS+  + LS++
Sbjct: 842  ----------IAQPLYGLANKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSEL 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+  +   W          +  ++ LG    +K FL+      I+    N+ 
Sbjct: 892  Q--HKPFDMLFAD---WNMPGMNGIELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 I ++I+KP+  S L  ++  + G+ +  + +N ELP +  R    G+K+L+V+DN
Sbjct: 947  L----IDALIVKPVNPSNLLDAIVTSYGIDHVRHKQN-ELP-LHTRPNFAGQKLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G +V     G++A E L     FD   MD+QMP MDG  ATK IR 
Sbjct: 1001 EVNQEVALGLLEETGLSVTIANNGQEALEKL-ENADFDLVLMDMQMPVMDGITATKHIRT 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +               ++PI+AMTA+ + A  E CL+ GM+G++SKP E +
Sbjct: 1060 -----NGRWK---------------NLPIVAMTANAMAADIERCLQVGMNGHLSKPIEVD 1099

Query: 839  QLYREVSRFF 848
            + Y+ + +F 
Sbjct: 1100 KFYQVLKQFL 1109


>gi|414071300|ref|ZP_11407271.1| two-component system, NarL family, sensor histidine kinase BarA
           [Pseudoalteromonas sp. Bsw20308]
 gi|410806264|gb|EKS12259.1| two-component system, NarL family, sensor histidine kinase BarA
           [Pseudoalteromonas sp. Bsw20308]
          Length = 906

 Score =  273 bits (698), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 185/604 (30%), Positives = 292/604 (48%), Gaps = 92/604 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A+  KS FLA +SHE+RTP+NGV+G    L  T L+  Q+DY+ T + S  +L+
Sbjct: 258 KKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKTPLNKHQKDYLDTIELSANSLM 317

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++I+++LD +K+E+G +ELE++ F LR  +++V++L +  + DK +EL++YI+ +VP+ L
Sbjct: 318 TIISDILDFSKLEAGAMELESIQFQLRDAINEVMTLLAPSAHDKQLELSIYINQQVPDDL 377

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP RF+QI+ NL+ N+IKFTEKG I V V                             
Sbjct: 378 TGDPTRFKQILINLLSNAIKFTEKGSIKVDV----------------------------- 408

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                   ++  +++ ++            L+VSV DTG GIP+  Q  +FTPF Q   S
Sbjct: 409 -------SYRLLDEERAS------------LLVSVTDTGVGIPMNKQDSLFTPFGQADSS 449

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           I+R  GGTG+GL I+K++V  M G I   S P  G+ FTF ++F          N    N
Sbjct: 450 ITRKFGGTGLGLIITKHIVEAMNGRITLNSAPGNGTCFTFNSIF-------RLPNHVFTN 502

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
           + P   S    G + L ++P           + +    V    ++   L  I +     +
Sbjct: 503 DLP---SKSLIGKRILYLEPHEHTHHAVLSLLTQWQTSVTACFNETSFLDAITNKEHKYD 559

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
           + L+       D      +V ++R+        L+L+ N++S +       G    + + 
Sbjct: 560 ICLIGHMASVDDMQQLKSYVKSVRE----STDYLYLMLNTVSHNMREAFI-GSGADACLS 614

Query: 670 KPLRSSMLAASLQRAMGVGNK-GNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
           KPL    L   L     + +   NI   E       H LL  K+L+VDDN+ NLK+    
Sbjct: 615 KPLNHRKLCEVLAAPYRLDHPVHNIEQNE-------HQLLPLKVLVVDDNDANLKLLHTL 667

Query: 729 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
           L      +     G +A   L   H++D  FMDIQMP MDG  A K+I+E   N +    
Sbjct: 668 LSEQIEVIETAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDGITACKLIQESSLNED---- 722

Query: 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
                            PI+A+TA  + +  E+ L+ G  GY++KP + + L + +S   
Sbjct: 723 ----------------TPIIAVTAHALNSEKEQLLKDGFKGYLTKPIDEDMLKQIISEHS 766

Query: 849 PPIP 852
           P  P
Sbjct: 767 PQTP 770


>gi|373456904|ref|ZP_09548671.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
           DSM 13497]
 gi|371718568|gb|EHO40339.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
           DSM 13497]
          Length = 805

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 192/638 (30%), Positives = 318/638 (49%), Gaps = 96/638 (15%)

Query: 207 WPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLAT 266
           +PL+ I    GI+   ++V   F    N     E     +++ ++ AEAAD+AKS FLA+
Sbjct: 239 YPLIVIHLLFGIIGTLAIV---FFGIFN-----ERKQRELIKAREAAEAADIAKSDFLAS 290

Query: 267 VSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKL 326
           +SHEIRTPMNGV+GM  +LM T L   Q++YV+T + S ++L+++IN++LD +K+ESGK+
Sbjct: 291 MSHEIRTPMNGVMGMSSLLMQTPLTPEQREYVQTIRISAESLLTIINDILDFSKIESGKM 350

Query: 327 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGN 386
           +LE   F L+  +++ L L + K+ +K ++L  +I   VP  +  D  R RQ++ NL+ N
Sbjct: 351 DLEFQPFELKTCIEEALDLVAPKAAEKNLDLVYFIEPDVPTYIESDITRLRQVLVNLINN 410

Query: 387 SIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 446
           ++KFT+KG +F+ V  +                                       QDG 
Sbjct: 411 AVKFTQKGEVFINVGRIA--------------------------------------QDGD 432

Query: 447 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKY 506
           T          + L  SV+DTG GI  +  +++F  F Q   S +R +GGTG+GL+ISK 
Sbjct: 433 T----------VELQFSVKDTGIGIAEDKINKLFDAFTQADSSTTRKYGGTGLGLAISKR 482

Query: 507 LVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALV 566
           LV  M G I   S    GSTF FT      SS   ++ + ++         E  G+  LV
Sbjct: 483 LVEMMGGRIWVTSKVGKGSTFYFTIKAKAASSLPKKYLNIKI--------PELTGVHVLV 534

Query: 567 VDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVST 626
           VD      ++ +   QR G++V+  +   + L  + +G++  ++ +++ ++ E D     
Sbjct: 535 VDDNKTNRRILKLQCQRWGMKVQEAATAREALEIMKNGTE-FDLAILDMQMPEMD---GV 590

Query: 627 LFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686
                +RKL    +  L +L++     +     +     +++ KP++ S L  +L  A+ 
Sbjct: 591 ELAAEIRKLYSKEELPLIMLSSLGKPPKLKEKAE--MFDALLTKPVKQSQLYNTLLEAL- 647

Query: 687 VGNKGNIR-NWELPSMSLRHLLLGR---KILIVDDNNVNLKVAAAGLKRYGAAVVCVERG 742
              K +++  W     +L      +   +IL+ +DN++N K+    L + G        G
Sbjct: 648 -NRKPSVQEKWSASEATLDETFARKYPLRILLAEDNSINQKLGLKVLAKMGYTADLAANG 706

Query: 743 KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 802
            +  E L    ++D  FMD+QMPEMDG EAT   R++  NF                  N
Sbjct: 707 LEVLEAL-KQQRYDLIFMDVQMPEMDGLEAT---RQIIQNFP----------------EN 746

Query: 803 FHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
               I+AMTA+ ++   E+CL +GMD YVSKP + E++
Sbjct: 747 ERPVIIAMTANAMKGDREKCLNAGMDDYVSKPIDLEEI 784


>gi|304312962|ref|YP_003812560.1| sensory box histidine kinase/response regulator [gamma
           proteobacterium HdN1]
 gi|301798695|emb|CBL46927.1| sensory box histidine kinase/response regulator [gamma
           proteobacterium HdN1]
          Length = 833

 Score =  273 bits (697), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 194/617 (31%), Positives = 304/617 (49%), Gaps = 74/617 (11%)

Query: 234 NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT 293
           NR  +V E      E K+ AEA+   K+QFLA +SHE+RTPM+GVLGML +L++T+L   
Sbjct: 285 NRAIRVSE------ENKRVAEASAEDKAQFLANMSHELRTPMHGVLGMLSLLLETQLSSD 338

Query: 294 QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDK 353
           QQ YV  A  SG  L+ L+N VLD +K+E  KL LE V F+LR  +++V+ +    +  K
Sbjct: 339 QQHYVEVAHESGNILLELLNNVLDLSKIEHNKLALERVEFDLRQAIEEVVVILGESANSK 398

Query: 354 GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 413
            +EL V+ +  VP  ++GDP R +QI+ NL+GN+IKFT +GH+ ++  ++          
Sbjct: 399 LLELVVWQNASVPSRVVGDPIRLKQIVFNLLGNAIKFTTQGHVEISYAVI---------- 448

Query: 414 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 473
                S+NT  G  V D   +   F+   QD S      S  D + +   V DTG G+  
Sbjct: 449 -----SENTRRG--VVDSAEA--DFQAQEQDVS-----ESVGDELWIRFDVSDTGVGLSE 494

Query: 474 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533
           + Q +IF  F Q   + +R +GG+G+GL++ K +V  M G IG  S    GS F F   F
Sbjct: 495 DVQEKIFEAFTQADSTTTRVYGGSGLGLALCKQIVKLMGGAIGVESELGKGSKFWFEIPF 554

Query: 534 GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 593
           G    T        +N+            K +V+D + + A+  R+++  L +   + ++
Sbjct: 555 GKTPQTLPALREIALNSN-----------KVMVLDGKKVSAEAMRHYLAELEVDCVLAAN 603

Query: 594 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 653
           +   L+ + SG  +   +L+  +  ++DT    L    +R+          +   SI   
Sbjct: 604 EFDVLTLLESGGALYFRLLISLDT-KQDTIYHLLKAPTVRR---ELDDANIVFYGSIQQR 659

Query: 654 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR-NWELPSMSLRHLLLGRKI 712
                    +   V+ KP+R S     L+RA G    GN+     LP +   H     +I
Sbjct: 660 NDFRLLKEYAGFDVLTKPIRLS----QLRRAFGF--IGNVHVAGALPVV---HGASSLRI 710

Query: 713 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEA 772
           L+V+D+ +N +VA   LK+ G      E G+ A + +M    +D   MD+QMP MDG+  
Sbjct: 711 LVVEDHPINRQVAVGLLKKLGFVPEVAENGEIALK-MMQNQAYDLILMDLQMPVMDGYST 769

Query: 773 TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832
           T+ +R+ E     R                   PI+AMTA  +    E C  +GMD Y++
Sbjct: 770 TRTVRQWEREGRRR------------------TPIIAMTAHALSGDRERCAEAGMDDYLA 811

Query: 833 KPFEAEQLYREVSRFFP 849
           KP +AE L   + ++ P
Sbjct: 812 KPVKAELLMAVLGKWLP 828


>gi|302037639|ref|YP_003797961.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300605703|emb|CBK42036.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 950

 Score =  272 bits (696), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 193/617 (31%), Positives = 294/617 (47%), Gaps = 101/617 (16%)

Query: 260 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
           KS FLA ++HE+RTPMNGV+GM  +L++T L   Q+ +  T Q  G+A +SLIN+VL+ +
Sbjct: 284 KSSFLAMITHELRTPMNGVIGMASLLLETPLTEEQRSFTNTIQQCGEAQLSLINDVLECS 343

Query: 320 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
           K+E+GKLELE + F LR  ++DVLS F+ ++Q KG+E+   +   VP  L GDPGR RQ+
Sbjct: 344 KIEAGKLELEHLDFYLRTTVEDVLSQFAERAQRKGLEITGLVHAAVPNALRGDPGRLRQV 403

Query: 380 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
           +TN +GN+IKFTE+G + +  +L  +    + ++ E++ S                    
Sbjct: 404 LTNFVGNAIKFTERGEVTLQAFLERDSPSEVIIKFEVTDS-------------------- 443

Query: 440 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
                                       G GI  + QSR+F  F Q   S +R +GGTG+
Sbjct: 444 ----------------------------GIGISEDVQSRLFQAFTQADSSTTRKYGGTGL 475

Query: 500 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS-E 558
           GL+ISK LV  M G++G  S P  G+TF  TA F            +Q    P  V S E
Sbjct: 476 GLAISKQLVELMGGQVGLRSQPGQGTTFWCTARF-----------QKQAVCAPAIVPSVE 524

Query: 559 FQGMKALVVDPRPIRAKVSRYHIQRLGI---QVEVVSDQLQCLSQIASGSKIINMILVEQ 615
             G + L+VD       +  + +   G+   Q     + +  L Q A+  +  +  +++ 
Sbjct: 525 LSGRRILIVDDNESNRTILHHLVSGWGMQDGQARHADEAILMLEQAAAQGRPYDAAVLDM 584

Query: 616 EVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS 675
            +  KD          +R    G   +L +L + I    A  +       + + KP+R  
Sbjct: 585 LMPGKD---GLQLAQEIRAHPQGAGVRLIVLTSLIQPGHAERARRA-GFTAYLTKPVRHD 640

Query: 676 MLAASLQ-----------RAMGVGNKGNIRNWELPSMSLRHLLLGR----KILIVDDNNV 720
            L   L+            A GV     I    +P++  RH L  +    +IL+ +DN V
Sbjct: 641 QLQGCLRVVFGLQGPATTNAPGVATGPTI----VPTLITRHTLAEQRARPRILVAEDNVV 696

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           N K+A   L R G     V  G++A         + A  MD QMP MDG+EAT+ IRE E
Sbjct: 697 NQKLAVRMLDRLGYQPDIVSNGQEAVAAF-ERGLYAAIVMDCQMPTMDGYEATRRIREQE 755

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                         +   + +  H+PI+A+TA+ +    E C  +GMD Y+SKP + + L
Sbjct: 756 Q-------------KPAASGTRAHIPIIALTANAMPGDRERCKAAGMDDYLSKPVKTDDL 802

Query: 841 YREVSRFFP-PIPDRSP 856
            R + R+ P   PD +P
Sbjct: 803 GRLLQRWAPLATPDHAP 819


>gi|392378909|ref|YP_004986068.1| two-component hybrid sensor and regulator [Azospirillum brasilense
            Sp245]
 gi|356881276|emb|CCD02261.1| two-component hybrid sensor and regulator [Azospirillum brasilense
            Sp245]
          Length = 1264

 Score =  272 bits (696), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 198/624 (31%), Positives = 310/624 (49%), Gaps = 92/624 (14%)

Query: 235  RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQ 294
            R   +EE    +   + +AEAA  AKS FLA +SHEIRTPMNGV+GM D+L++T L   Q
Sbjct: 580  RTEALEEVTDALRLARDEAEAATHAKSDFLAAMSHEIRTPMNGVIGMTDLLLETGLIGEQ 639

Query: 295  QDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKG 354
              + +  ++S  AL+++IN++LD +K+E+G++ELE + FN   +L+ V+ L   K+ +KG
Sbjct: 640  LQFAQAVRSSANALLTIINDILDMSKLEAGRVELETLPFNPADLLEGVVELLWPKAHEKG 699

Query: 355  VELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVET 414
            ++L + +S     T++GD  R RQI+ NL+GN++K+TE G++ +           I+ +T
Sbjct: 700  IDLGILLSPEARHTVLGDATRLRQILVNLVGNAVKYTETGNVVIET--------GIQTQT 751

Query: 415  ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLE 474
                                         DG++    +   D+I       DTG GIP E
Sbjct: 752  -----------------------------DGNSETIHTLRFDVI-------DTGIGIPSE 775

Query: 475  AQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV-- 532
            A SR+F+ F QV  +I+R +GGTG+GL+I K L   M+G I   S    GS FT      
Sbjct: 776  AISRLFSRFEQVDRTIARRYGGTGLGLAICKQLTELMQGRITVKSDQATGSQFTVEVPIR 835

Query: 533  FGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 592
              NGSS  +E  S             F G  ALV+ P     ++    ++ L + V+  S
Sbjct: 836  IANGSSQQSEWMS-------------FTGRHALVIKPPGFNRRILTAQLRSLTLDVQEAS 882

Query: 593  D---QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 649
            D       L++  +     +++ V Q ++  DT   TL    L +    +  ++ L+  S
Sbjct: 883  DAQTARAALAKAVTSGHPFDVVFVSQSLF--DTVSDTLLQFGLDR--SDYAPRIILVC-S 937

Query: 650  ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI----RNWELPSMSL-R 704
              +  A+T  D +   + + +P+R + L++ L R    G    +    R+   P   + R
Sbjct: 938  YGAPLASTGNDKLVPFACLARPIRMAALSSILGRLFSDGLDAPLATPARSHHPPEREINR 997

Query: 705  HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 764
                   ILI +DN  N  +AA  L+R G  V  V+ G +A E  M    +D   MD+QM
Sbjct: 998  PPARSAHILIAEDNATNQLIAATLLRRAGFTVDIVDDGVQALE-AMSLRPYDLVLMDVQM 1056

Query: 765  PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 824
            P + GFEAT+ IR +         RG  +           VP++A+TAD +  T E CLR
Sbjct: 1057 PNLTGFEATEHIRAL---------RGPRAT----------VPVIALTADAMIETRERCLR 1097

Query: 825  SGMDGYVSKPFEAEQLYREVSRFF 848
            +GM+  V+KPFE   L   ++R+ 
Sbjct: 1098 AGMNDVVTKPFERSALLGVINRWL 1121


>gi|406830748|ref|ZP_11090342.1| PAS sensor protein [Schlesneria paludicola DSM 18645]
          Length = 1117

 Score =  272 bits (696), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 191/593 (32%), Positives = 303/593 (51%), Gaps = 86/593 (14%)

Query: 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 318
           AKS FLA +SHEIRTP+N ++GM +++ DT+L+ TQ++Y+   Q SG++L+S+IN++LD 
Sbjct: 460 AKSDFLANMSHEIRTPLNAIIGMTELVRDTDLNTTQREYLAMVQESGESLLSVINDILDF 519

Query: 319 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 378
           +K+E+GKL LE VSFNLR +L D +   + ++  K +ELA +++  VP  + GDP R RQ
Sbjct: 520 SKIEAGKLSLERVSFNLREMLGDTMKSLALRAHRKRLELACHVAHGVPAAVEGDPHRLRQ 579

Query: 379 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 438
           I+ NL+GN+IKFTE+G          EVV  +E E                         
Sbjct: 580 IVVNLVGNAIKFTERG----------EVVLDVEAEY------------------------ 605

Query: 439 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 498
                         +S D + L   V DTG GI  +    IF  F Q   S +R +GGTG
Sbjct: 606 --------------TSGDELILHFRVTDTGIGISADQLHTIFEAFEQADTSTTRRYGGTG 651

Query: 499 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 558
           +GL+IS  LV  M+G I   S  N GSTF F A F   S +S E  +++    P      
Sbjct: 652 LGLAISSRLVELMQGRIWVESELNCGSTFHFLAKF---SMSSPEAEARESTIYP----PM 704

Query: 559 FQGMKALVVDPRPIRAKV---SRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQ 615
             G++ L+VD      ++      + Q   + V  V+D +  L  +++  +   M+L + 
Sbjct: 705 LHGLRVLIVDDNATNRRILIEILTNWQMNPVAVSCVTDAISELRTMSTDGQPYAMVLTDA 764

Query: 616 EVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG-VSIPSVIMKPLRS 674
            + + D          + +     +S + +L +       + S  G + + + ++KP++ 
Sbjct: 765 NMPDVD---GFELARQIHENPILCRSMVMMLTS--GDRPGDISRCGQLGVSAYLVKPIKQ 819

Query: 675 SMLAASLQRAMGVGNKGNIRNWELPSM-SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYG 733
           S L  ++   + VG + ++      S+ S R     + +L+ +D+ +N K+A   L+++G
Sbjct: 820 SELLDAI--LVAVGGQSSLTGCLDKSLSSARKATQSKSVLLAEDSLINQKLAIGLLEKWG 877

Query: 734 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVS 793
             V     G++A   L   + FD   MD+QMPEMDG +AT+ IR          RR    
Sbjct: 878 HRVTVANDGQEAVN-LSGQYIFDLALMDVQMPEMDGLDATRAIR----------RR---- 922

Query: 794 IEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
               E ++  H+PILAMTA  ++   E CL +GMD Y+ KP  AEQL++ + R
Sbjct: 923 ----EILTGVHLPILAMTAHAMKGDRERCLAAGMDDYLMKPIRAEQLFQAIER 971


>gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of
            Hydra magnipapillata]
          Length = 1191

 Score =  272 bits (696), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 208/648 (32%), Positives = 317/648 (48%), Gaps = 116/648 (17%)

Query: 226  GHI----FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGM 281
            GHI    F   V +   + E+   + + K  AEAA+ AKS FLA +SHEIRTPMNGV+GM
Sbjct: 509  GHIVWNGFLTDVTQARHISEE---LQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGM 565

Query: 282  LDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 341
             ++L+DT LD  QQ+Y+   ++S +AL+ +IN++LD +K+E+GK+++E++ FNL   + D
Sbjct: 566  TELLLDTTLDAEQQEYLNIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVAD 625

Query: 342  VLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVY 401
             L     ++ DKG+E+   ++  VP  L+GDPGR RQ++ N++GN+IKFTE+G +     
Sbjct: 626  TLKTVVLRAHDKGLEVVWDVAPDVPRALVGDPGRLRQVLVNILGNAIKFTERGEVV---- 681

Query: 402  LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLI 461
                    + +  E++S     +G P+                               L 
Sbjct: 682  --------LRIRQEVAS-----NGKPL-------------------------------LH 697

Query: 462  VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 521
            ++V DTG GIP      IF  F Q   S +R +GGTG+GL+I   LV  M G I   S P
Sbjct: 698  LAVSDTGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIWVESTP 757

Query: 522  NIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHI 581
              GS F FT      +S   E           +      G+  LVVD   +  +V    +
Sbjct: 758  GQGSVFHFTVALVKDTSAPVE----------TAALIRLDGLHILVVDDNLVNREVVCGML 807

Query: 582  QRLGI---QVEVVSDQLQCLS-QIASGSKI-INMILVEQEVWEKDTSVSTLFVNNLRKLG 636
               G    Q +     L  LS Q A+ +++  +++L++ ++ E D   +   V  L    
Sbjct: 808  HSFGARTSQADSGRAALDWLSQQTAANAQVPCDLVLLDGQMPEMDGFSTAPLVRGLPN-- 865

Query: 637  CGFQSKLFLLANSISSSRANTSTDG-----VSIPSVIMKPLRSSMLAASLQRAMGVGNKG 691
            C     + L       S A    DG     V I   + KP+    L   LQ   GV    
Sbjct: 866  CSSLPMVLL-------SSAGMKGDGQRSRQVGIAGYLSKPIARQDL---LQMVSGVLQMH 915

Query: 692  NIRNWELPS-MSLR--HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL 748
             +R   L +  S+R  H +L   IL+V+D+ +N K+A   L+R+G  V     G+ A ++
Sbjct: 916  KVRPEVLVTRHSIRDSHPVL--DILLVEDHAINQKLAVTLLQRWGHHVDVAGNGQIALDM 973

Query: 749  LMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL 808
            L P   +D   MD+ MP MDG EAT+ IR      N R RR               +PI+
Sbjct: 974  L-PKRPYDLILMDMMMPVMDGLEATRHIRA-----NERGRR---------------IPII 1012

Query: 809  AMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV---SRFFPPIPD 853
            AMTA+ +++    CL +GMD Y++KP ++E+L +++   S   P  PD
Sbjct: 1013 AMTANAMESDRNLCLEAGMDDYIAKPIKSEELQQKILQLSHAAPEEPD 1060


>gi|359453122|ref|ZP_09242446.1| two-component system, NarL family, sensor histidine kinase BarA
           [Pseudoalteromonas sp. BSi20495]
 gi|358049753|dbj|GAA78695.1| two-component system, NarL family, sensor histidine kinase BarA
           [Pseudoalteromonas sp. BSi20495]
          Length = 928

 Score =  272 bits (695), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 185/604 (30%), Positives = 292/604 (48%), Gaps = 92/604 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A+  KS FLA +SHE+RTP+NGV+G    L  T L+  Q+DY+ T + S  +L+
Sbjct: 280 KKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKTPLNKHQKDYLDTIELSANSLM 339

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++I+++LD +K+E+G +ELE++ F LR  +++V++L +  + DK +EL++YI+ +VP+ L
Sbjct: 340 TIISDILDFSKLEAGAMELESIQFQLRDAINEVMTLLAPSAHDKQLELSIYINQQVPDDL 399

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP RF+QI+ NL+ N+IKFTEKG I V V                             
Sbjct: 400 TGDPTRFKQILINLLSNAIKFTEKGSIKVDV----------------------------- 430

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                   ++  +++ ++            L+VSV DTG GIP+  Q  +FTPF Q   S
Sbjct: 431 -------SYRLLDEERAS------------LLVSVTDTGVGIPMNKQDSLFTPFGQADSS 471

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           I+R  GGTG+GL I+K++V  M G I   S P  G+ FTF ++F          N    N
Sbjct: 472 ITRKFGGTGLGLIITKHIVEAMNGRITLNSAPGNGTCFTFNSIF-------RLPNHVFTN 524

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
           + P   S    G + L ++P           + +    V    ++   L  I +     +
Sbjct: 525 DLP---SKSLIGKRILYLEPHEHTHHAVLSLLTQWQTSVTACFNETSFLDAITNKEHKYD 581

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
           + L+       D      +V ++R+        L+L+ N++S +       G    + + 
Sbjct: 582 ICLIGHMASVDDMQQLKSYVKSVRE----STDYLYLMLNTVSHNMREAFI-GSGADACLS 636

Query: 670 KPLRSSMLAASLQRAMGVGNK-GNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
           KPL    L   L     + +   NI   E       H LL  K+L+VDDN+ NLK+    
Sbjct: 637 KPLNHRKLCEVLAAPYRLDHPVHNIEQNE-------HQLLPLKVLVVDDNDANLKLLHTL 689

Query: 729 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
           L      +     G +A   L   H++D  FMDIQMP MDG  A K+I+E   N +    
Sbjct: 690 LSEQIEVIETAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDGITACKLIQESSLNED---- 744

Query: 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
                            PI+A+TA  + +  E+ L+ G  GY++KP + + L + +S   
Sbjct: 745 ----------------TPIIAVTAHALNSEKEQLLKDGFKGYLTKPIDEDMLKQIISDHS 788

Query: 849 PPIP 852
           P  P
Sbjct: 789 PQTP 792


>gi|451946365|ref|YP_007466960.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
           10523]
 gi|451905713|gb|AGF77307.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
           10523]
          Length = 932

 Score =  272 bits (695), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 183/606 (30%), Positives = 297/606 (49%), Gaps = 84/606 (13%)

Query: 249 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 308
           L ++A+AA+ AKSQFLA +SHEIRTPMNG+LGM +M +DT+LD   +  + T  +SG++L
Sbjct: 264 LAEQAQAANKAKSQFLANMSHEIRTPMNGILGMAEMALDTDLDKELRSSIETIMSSGESL 323

Query: 309 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 368
           +++IN++LD +K+E+GKLELE ++FNL  +++DV  + + ++  KG+EL V + D +   
Sbjct: 324 LTIINDILDFSKIEAGKLELETINFNLALLVEDVAQMLAYRAHAKGLELIVNVPDNISSY 383

Query: 369 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 428
           + GDP R RQ++ NL+GN+IKFT+ G I + + L+ E                       
Sbjct: 384 VSGDPSRLRQVLVNLLGNAIKFTDHGEILLQLTLLGET---------------------- 421

Query: 429 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 488
                          D   S           L  SV+DTG GI  +    +F PF Q   
Sbjct: 422 ---------------DNEAS-----------LRFSVQDTGIGISEDEYETLFHPFSQADD 455

Query: 489 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 548
           S +R +GGTG+GL+IS+ LV  M GEI   S P  GS F         S T    +++  
Sbjct: 456 STTRKYGGTGLGLAISRQLVELMGGEINCNSRPGGGSEFWMEVTLDKASGTEVVASTE-- 513

Query: 549 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGS 605
                  + +   ++A+++D      ++  + ++  G+     S   + L  L Q  +  
Sbjct: 514 -------ADKLSNLRAIIIDDNATNRRLLEHQMEIWGVDHASASGGIEGLTLLYQAVADR 566

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
           K  ++ ++++++   D     L V  L       Q    ++  S+             I 
Sbjct: 567 KPFDIAILDKDMPGMD----GLEVAALISKDPSLQGTRMVMLTSVGIRGDARLAHQAGIK 622

Query: 666 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR--HLLLGRKILIVDDNNVNLK 723
             + KP R   L  SL  A+   ++    N  +   SL+         +L+ +DN  N +
Sbjct: 623 IYLTKPTRQIDLYNSLV-ALMARDRFEDDNQLITHYSLQKNRATFDANVLVAEDNVTNQQ 681

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           VA   L++ G  V   + G++A +     + FD   MD QMP MDG+EAT  IR +E N 
Sbjct: 682 VAMGVLRKLGCKVTLTKNGQEALQFF-EKNSFDIVLMDCQMPRMDGYEATSAIRRLE-NM 739

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
            +R +R                P++A+TA+ +    E+CL +GMD Y+SKPF  +Q+ + 
Sbjct: 740 KDRGKR---------------TPVVALTANALTGDREKCLAAGMDDYISKPFSLQQVEKV 784

Query: 844 VSRFFP 849
           +  + P
Sbjct: 785 LKHWLP 790


>gi|259156567|gb|ACV96510.1| multi-sensor hybrid histidine kinase [Vibrio fluvialis Ind1]
          Length = 1252

 Score =  271 bits (694), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 191/607 (31%), Positives = 310/607 (51%), Gaps = 93/607 (15%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + + K++AE+A+ AKS+FLA +SHEIRTPMNGVLG+L ++ ++ LD  Q DY+  A ++ 
Sbjct: 507  LAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTLDQRQADYIEKAYSAA 566

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            K+L++L+N++LD +K+E+GKLEL+   F+L  +L D+  +FS  ++ KG+E+   ++  V
Sbjct: 567  KSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVLYDVTADV 626

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            PE L+GD  R +Q++ NL+GN+IKFT+KG I +++                         
Sbjct: 627  PEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISI------------------------- 661

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                 R  S         +G            INL  S++DTG GI LE Q+ +F+ F Q
Sbjct: 662  -----RSQSLP-------EGE-----------INLSFSIKDTGIGITLEQQNALFSGFQQ 698

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               SISR +GGTG+GL+ISK LV  M GEIG  S    GSTF+F  V  N    + +   
Sbjct: 699  ADSSISRRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGSTFSFNVVVRNAEKRAIQ--- 755

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC---LSQIA 602
               N+Q  + S+E   +  L+VD       + +     LG Q ++ SD  +    + Q  
Sbjct: 756  ---NSQTFTRSNE--KLSVLIVDDNDSARIILQGIAVSLGWQAKIASDAQEASLLVKQAH 810

Query: 603  SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
              S   +++ V+   W         F   LR+L     S + ++           + D  
Sbjct: 811  RDSTRYDVVFVD---WRMPGKDGLTFARELRELHSSVVSLIVMITAHGKELLDEQNNDYE 867

Query: 663  S-IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNN 719
              +   ++KP+  +M+  +++  +     G++ +  LP+  L H   L G  +L+V+DN 
Sbjct: 868  RYLDGFLIKPVTKNMMLQAVESVVF----GDL-DLSLPTSPLPHELPLQGISLLLVEDNL 922

Query: 720  VNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             N  VA+  L++ GA +     G++A E+L      FD   MDIQMP MDG++ T+ IR+
Sbjct: 923  TNQLVASELLQQLGATIKIASSGEEALEMLESTAEHFDMVLMDIQMPGMDGYQTTREIRK 982

Query: 779  M-EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
            +  H                       +PI+A+TA  +      CL +GM  +++KPF+ 
Sbjct: 983  LPRHQL---------------------LPIIAITAHAMSDDIAACLAAGMQDHIAKPFDL 1021

Query: 838  EQLYREV 844
             +L  ++
Sbjct: 1022 NELTTKI 1028


>gi|307151519|ref|YP_003886903.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981747|gb|ADN13628.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1426

 Score =  271 bits (694), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 201/593 (33%), Positives = 289/593 (48%), Gaps = 85/593 (14%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++AEAA+ AKS+F+A +SHEIRTPMNGV+GM  +L+DT L   Q+D V T + SG AL+
Sbjct: 771  KREAEAANKAKSEFVAMMSHEIRTPMNGVIGMTGILLDTPLSELQRDCVETIRNSGDALL 830

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
             +IN++LD +K+ESGKLELE   FNLR  ++  L L + K+ +KG+ELA       PET+
Sbjct: 831  MIINDILDFSKIESGKLELEEQPFNLRESIESSLDLLAPKAAEKGLELAYIFDPNTPETI 890

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GD  R RQI+ NL+GN IKFTEKG + V V                       S YP  
Sbjct: 891  LGDVTRLRQILVNLIGNGIKFTEKGEVVVNV-----------------------SSYPQE 927

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                 KSS+A    +  +V DTG GI  E + ++F  F QV  S
Sbjct: 928  ---------------------KSSTAPTYTIEFAVTDTGIGIAPERKDKLFKAFSQVDSS 966

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL ISK L   M GEI   S    GSTF FT        T+   +S  + 
Sbjct: 967  TTRQYGGTGLGLVISKRLTQLMGGEISVDSQQGKGSTFKFTI-------TAEAFHSSTLA 1019

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             +   + +     + L+VD      K+     Q  G+    V    + +  IA G +  +
Sbjct: 1020 WE-KYIITHLANKRVLIVDDNQTNRKILILQTQSWGMIPTAVDSGQKAIEIIAQG-ETFD 1077

Query: 610  MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
            + +++ ++   D     +    LR+   G    L LL++  +          V   S + 
Sbjct: 1078 LAILDMQMPSLD---GVMLAQILRQYPSGKNLPLILLSS--AGQLLPIERLKVDFSSTLS 1132

Query: 670  KPLRSSMLAASLQRAMGVGNKGNIRNWELP---SMSLRHLLLGR----KILIVDDNNVNL 722
            KP+  + L  +L +A+    K  +    +P   S+  ++  LG+    +ILI +DN VN 
Sbjct: 1133 KPIHQTQLYNALVQALQTQTKITLDRPSVPENGSILSKYKDLGQQHPLRILIGEDNAVNQ 1192

Query: 723  KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
            KV    L+R       V  G +  + L     +D   MDIQMPEMDG E T+ I +  H 
Sbjct: 1193 KVIQQILQRMSYRADLVANGLEVIQAL-KLQSYDVVLMDIQMPEMDGLETTRWITQTYHQ 1251

Query: 783  FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
              +R R                  I+AMTA+ +Q   E CL +GMD Y+SKP 
Sbjct: 1252 -GSRPR------------------IIAMTANAMQGDQEHCLAAGMDDYLSKPI 1285


>gi|359433021|ref|ZP_09223366.1| two-component system, NarL family, sensor histidine kinase BarA
           [Pseudoalteromonas sp. BSi20652]
 gi|357920330|dbj|GAA59615.1| two-component system, NarL family, sensor histidine kinase BarA
           [Pseudoalteromonas sp. BSi20652]
          Length = 924

 Score =  271 bits (694), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 186/604 (30%), Positives = 292/604 (48%), Gaps = 92/604 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A+  KS FLA +SHE+RTP+NGV+G    L  T L+  Q+DY+ T   S  +L+
Sbjct: 280 KKEAQDANRVKSDFLAKMSHELRTPLNGVMGFTRQLYKTPLNKHQKDYLDTIMLSANSLM 339

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++I+++LD +K+E+G +ELE++ F LR  +++V++L +  + DK +EL++YI+ +VP+ L
Sbjct: 340 TIISDILDFSKLEAGAMELESIQFQLRDSVNEVMTLLAPSAHDKQLELSIYINHQVPDDL 399

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP RF+Q++ NL+ N+IKFTEKG I V V                             
Sbjct: 400 TGDPTRFKQVLINLLSNAIKFTEKGSIKVDV----------------------------- 430

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                   F+  + + ++            ++VSV DTG GIP++ Q  +FTPF Q   S
Sbjct: 431 -------SFRLLDDERAS------------VLVSVTDTGVGIPMDKQDSLFTPFGQADSS 471

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           I+R  GGTG+GL I+K++V  M G I   S P  G+ FTF +VF       N  N    N
Sbjct: 472 ITRKFGGTGLGLIITKHIVEAMNGRITLNSAPGNGTCFTFNSVF-------NLPNHVFTN 524

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
           + P   S    G + L ++P           + +    V    ++   L  I S     +
Sbjct: 525 DLP---SKSLIGKRILYLEPHEHTHHAVLSLLTQWQTNVTACFNETSFLDAIKSNDFKYD 581

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
           + L+       D      ++ ++R+        L+L+ N++S +       G    + + 
Sbjct: 582 ICLIGHMASVDDMQQLKGYIKSVRE----STDYLYLMLNTVSHNMREAFI-GSGADACLS 636

Query: 670 KPLRSSMLAASLQRAMGVGNK-GNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
           KPL    L   L     + +   NI   E       H LL  K+L+VDDN+ NLK+    
Sbjct: 637 KPLNHRKLCELLAAPYRLDHPVHNIEQNE-------HQLLPLKVLVVDDNDANLKLLHTL 689

Query: 729 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
           L      +     G +A   L   H++D  FMDIQMP MDG  A K+I+E   N +    
Sbjct: 690 LSEQIEIIETAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDGITACKLIQESSLNED---- 744

Query: 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
                            PI+A+TA  + +  E+ L+ G  GY++KP + + L + +S   
Sbjct: 745 ----------------TPIIAVTAHALHSEKEQLLKDGFKGYLTKPIDEDMLKQIISDHS 788

Query: 849 PPIP 852
           P  P
Sbjct: 789 PQTP 792


>gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1610

 Score =  271 bits (693), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 190/611 (31%), Positives = 295/611 (48%), Gaps = 100/611 (16%)

Query: 244  HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
            H + E + +A  A   K+ FLAT+SHEIRTPMN ++GM  +L+DT L   Q ++  + + 
Sbjct: 1067 HALAEARDEALRAAQVKADFLATMSHEIRTPMNAIIGMTGLLLDTALTKEQHEFADSVRR 1126

Query: 304  SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 363
            S   L++L+N++LD +K+E+GKL  E + F+LR  ++D + L + ++Q KG+EL   +  
Sbjct: 1127 SSDGLLTLLNDILDFSKIEAGKLHFEQLPFDLRMTVEDTVELLAEQAQSKGLELIGLVDA 1186

Query: 364  RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 423
             VP  ++GDPGR RQI+ NL+GN+IKFT  G +F+ V                  ++ T 
Sbjct: 1187 AVPTAVVGDPGRLRQILVNLVGNAIKFTAAGEVFLHV------------------TRETQ 1228

Query: 424  SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483
             G                              DL+    +++DTG GIP   Q R+F  F
Sbjct: 1229 GGL-----------------------------DLLRF--TIKDTGIGIPEAVQGRLFHAF 1257

Query: 484  MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 543
            +Q   S +R  GGTG+GL+I + LV +M G+IG  S    GSTF FTA F   +      
Sbjct: 1258 VQADSSTTRRFGGTGLGLAICQRLVSQMHGQIGVESHSGQGSTFWFTAQFPETT------ 1311

Query: 544  NSQQMNNQPNSVS-SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC--LSQ 600
                +   P+  S S  +G + L+VD      +  R  +   G+   V     +   L++
Sbjct: 1312 ----LATAPSPFSWSRLRGRRILLVDHCDTVRQAMRQELTSHGMNCTVAQSGPEAVELAR 1367

Query: 601  IASGSK-IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTST 659
             A+ S+   ++ L+E  + + D          L K G        ++  ++       + 
Sbjct: 1368 TAAASQNPFDLALIELHLSDMD----GFETAALLKQGPATAGIRLIILTTVGRRGDGQTA 1423

Query: 660  DGVSIPSVIMKPLRSSMLAASLQRAMGV-GNKGNIRNWELPSMSLRHLL----LGRK--I 712
              + I + + KPLR + L   L   +      G   N E P++  RH L     G K  +
Sbjct: 1424 RSIGIDAYLTKPLRQAQLLECLCLLLAPESTAGTPPNAEPPALITRHTLSESQAGPKPRL 1483

Query: 713  LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ---FDACFMDIQMPEMDG 769
            L+ +DN VN KVA   L++ G  V     G++A    +  H+   +    MD QMPE+DG
Sbjct: 1484 LLAEDNPVNQKVACKMLEKLGYRVDVAGNGQEA----VAAHERSRYPLILMDCQMPEVDG 1539

Query: 770  FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
            FEAT +IR+ME                     + H PI+AMTA+ +Q   E CL +GMD 
Sbjct: 1540 FEATALIRKMEGR-------------------SAHTPIVAMTANAMQGDRERCLAAGMDD 1580

Query: 830  YVSKPFEAEQL 840
            Y++KP   ++L
Sbjct: 1581 YIAKPVRPKEL 1591


>gi|254850977|ref|ZP_05240327.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|440708940|ref|ZP_20889600.1| hypothetical protein VC4260B_03450 [Vibrio cholerae 4260B]
 gi|21885294|gb|AAL59700.1| putative histidine kinase [Vibrio cholerae]
 gi|254846682|gb|EET25096.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|259156330|gb|ACV96276.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Ind4]
 gi|439975681|gb|ELP51793.1| hypothetical protein VC4260B_03450 [Vibrio cholerae 4260B]
          Length = 1268

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 190/607 (31%), Positives = 310/607 (51%), Gaps = 93/607 (15%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + + K++AE+A+ AKS+FLA +SHEIRTPMNGVLG+L ++ ++ LD  Q DY+  A ++ 
Sbjct: 523  LAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTLDQRQADYIEKAYSAA 582

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            K+L++L+N++LD +K+E+GKLEL+   F+L  ++ D+  +FS  ++ KG+E+   ++  V
Sbjct: 583  KSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLMQDIGLVFSSSAEQKGLEVLYDVTADV 642

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            PE L+GD  R +Q++ NL+GN+IKFT+KG I +++                         
Sbjct: 643  PEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISI------------------------- 677

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                 R  S         +G            INL  S++DTG GI LE Q+ +F+ F Q
Sbjct: 678  -----RSQSLP-------EGE-----------INLSFSIKDTGIGITLEQQNALFSGFQQ 714

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               SISR +GGTG+GL+ISK LV  M GEIG  S    GSTF+F  V  N    + +   
Sbjct: 715  ADSSISRRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGSTFSFNVVVRNAEKRAIQ--- 771

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC---LSQIA 602
               N+Q  + S+E   +  L+VD       + +     LG Q ++ SD  +    + Q  
Sbjct: 772  ---NSQTFTRSNE--KLSVLIVDDNDSSRIILQGIAVSLGWQAKIASDAQEASLLVKQAH 826

Query: 603  SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
              S   +++ V+   W         F   LR+L     S + ++           + D  
Sbjct: 827  RDSTRYDVVFVD---WRMPGKDGLTFARELRELHSSVVSLIVMITAHGKELLDEQNNDYE 883

Query: 663  S-IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNN 719
              +   ++KP+  +M+  +++  +     G++ +  LP+  L H   L G  +L+V+DN 
Sbjct: 884  RYLDGFLIKPVTKNMMLQAVKSVVF----GDL-DLSLPTSPLPHELPLQGISLLLVEDNL 938

Query: 720  VNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             N  VA+  L++ GA +     G++A E+L      FD   MDIQMP MDG++ T+ IR+
Sbjct: 939  TNQLVASELLQQLGATIKIASSGEEALEMLESTAEHFDMVLMDIQMPGMDGYQTTREIRK 998

Query: 779  M-EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
            +  H                       +PI+A+TA  +      CL +GM  +++KPF+ 
Sbjct: 999  LPRHQL---------------------LPIIAITAHAMSDDIAACLAAGMQDHIAKPFDL 1037

Query: 838  EQLYREV 844
             +L  ++
Sbjct: 1038 NELTTKI 1044


>gi|383756738|ref|YP_005435723.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus IL144]
 gi|381377407|dbj|BAL94224.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus IL144]
          Length = 1182

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 185/601 (30%), Positives = 292/601 (48%), Gaps = 108/601 (17%)

Query: 253  AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
            AEAA  AKS FLAT+SHEIRTPMN ++GM  + ++T+L+  Q+DY+   Q +G++L++ I
Sbjct: 532  AEAASAAKSNFLATMSHEIRTPMNAIIGMTALALNTDLNPRQRDYLHKIQTAGRSLLATI 591

Query: 313  NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
            N++LD +K+E+GKLE+E   F L  +L +V    + ++  KG+E  V +   VP  LIGD
Sbjct: 592  NDILDFSKIEAGKLEIERREFELEEVLGEVCDQLAARAAAKGLEFVVDLGTEVPRRLIGD 651

Query: 373  PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 432
            P R  Q++ NL GN++KFTE+G + V ++        ++ +TE                 
Sbjct: 652  PLRLGQVLLNLCGNAVKFTEQGGVCVRLH--------VQRQTE----------------- 686

Query: 433  HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492
                                   D + L  +V+D+G G+  E +SR+F  F Q   SI+R
Sbjct: 687  -----------------------DCVMLRCAVQDSGIGLDAEQRSRLFQSFQQADSSITR 723

Query: 493  THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA----VFGNGSSTSNEHNSQQM 548
             +GGTG+GL I+K LV    GEIG  S P  GSTF FTA    V G G+ T  +      
Sbjct: 724  RYGGTGLGLVIAKRLVELQGGEIGVDSEPGAGSTFWFTAHLGVVAGRGARTWGD------ 777

Query: 549  NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC---LSQIASGS 605
                    +  +G +ALV D  P   +V    ++  G+QV +  D   C   L +  +  
Sbjct: 778  --------AALRGRQALVADAHPRAREVMVSMLRGFGLQVTLAEDWAACARLLREADAAG 829

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
            + +++ ++E ++    T+        L  L      +L  +A     +    S +     
Sbjct: 830  RGVDVAVLECQL---ATAGGATPATALEALALQHPPRLVAVAGPNVVAEDEDSAE----R 882

Query: 666  SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE------LPSMSLRHLLLGRKILIVDDNN 719
            +V+ +P+  S L  +L R +      +  +W         +      L GR++L+ +DN+
Sbjct: 883  AVLHQPVTPSRLLDTLMRLL-----VDPTSWRPASAAAPAADGGPAALRGRRVLLAEDND 937

Query: 720  VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
            +N +VA   L   G  V   E G  A E +   H +D   MD+QMPEMDG  AT+ IR +
Sbjct: 938  LNQQVAVELLSELGLEVDVAENGLVAVEKVRSTH-YDLVLMDMQMPEMDGLSATRAIRAL 996

Query: 780  EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
                                     +PI+AMTA+ +Q   + CL +GMD +++KP +  +
Sbjct: 997  P--------------------GAARLPIVAMTANAMQGDVQRCLNAGMDDHIAKPIDPNR 1036

Query: 840  L 840
            L
Sbjct: 1037 L 1037


>gi|385799765|ref|YP_005836169.1| Hpt sensor hybrid histidine kinase [Halanaerobium praevalens DSM
           2228]
 gi|309389129|gb|ADO77009.1| Hpt sensor hybrid histidine kinase [Halanaerobium praevalens DSM
           2228]
          Length = 1043

 Score =  271 bits (692), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 190/602 (31%), Positives = 307/602 (50%), Gaps = 91/602 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K+KAE A+ AKS+FLA +SHEIRTP+N + G++ +++DT L + Q+DY++  Q+S  +L 
Sbjct: 307 KQKAELANKAKSEFLANMSHEIRTPINAIKGLIYLILDTPLSMQQKDYLKKIQSSTVSLS 366

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            LIN++LD +K+E+ KL+LEA  F L  +L D+ +  + K+ DKG+E   Y +D VP+ L
Sbjct: 367 RLINDILDFSKIEAKKLDLEAEEFALDDVLHDLSNQAAMKAYDKGLEF-FYDTDHVPQKL 425

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GD  R  QI+ NL+ N+IKFTE G + + V ++++    I+++                
Sbjct: 426 VGDSLRLGQILLNLVSNAIKFTETGEVRLIVRIIKKTEQKIKLK---------------- 469

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                             V+DTG G+  E Q ++F+ F Q   S
Sbjct: 470 --------------------------------FIVKDTGIGMTKEEQQKLFSQFTQADSS 497

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R +GGTG+GL+IS+ LV +M GEI   S P  GSTFTFTA FG G         ++ N
Sbjct: 498 TTRKYGGTGLGLTISQRLVEKMGGEIKVESKPAEGSTFTFTAQFGLGKQPQLSQKLKKYN 557

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
                        K L+VD   +        I + G++VE  S  L  + +I   S   +
Sbjct: 558 ---------LDHKKVLIVDDIKMNRDFLIGVIDQFGLEVEAASGALLAIEKIKKESD-YD 607

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
           +I ++ ++ + D   +   +    +L      K+ L+    +  +   ++   +I  ++ 
Sbjct: 608 LIFMDWKMPDLDGIKAATIIK--EELNLELVPKIILIT---AFGKELENSQQKNIDKILF 662

Query: 670 KPLRSSMLAASLQRAMGVGN--KGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAA 727
           KP+  S+L  +L  ++G  N  K   +N E     L  +     IL+V+DN +N +VA  
Sbjct: 663 KPITQSILFNALLNSLGGVNIEKEKNKNGEKILKDLGPV----NILVVEDNKINQQVAVE 718

Query: 728 GLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787
            L++  A V   + GKKA    +   +FD   MD+QMPEMDG++ATK IR+ + N N   
Sbjct: 719 LLRKVKAQVEIADNGKKAIA-KIKKQKFDLVLMDVQMPEMDGYQATKKIRQ-DLNLN--- 773

Query: 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                            +PI+AMTA+ I+   E+ L  GMD Y++KP + +Q +  + ++
Sbjct: 774 ----------------KLPIIAMTANAIKGHKEKALAMGMDDYITKPLDLDQFFSTLKKW 817

Query: 848 FP 849
            P
Sbjct: 818 LP 819


>gi|336323037|ref|YP_004603004.1| multi-sensor hybrid histidine kinase [Flexistipes sinusarabici DSM
            4947]
 gi|336106618|gb|AEI14436.1| multi-sensor hybrid histidine kinase [Flexistipes sinusarabici DSM
            4947]
          Length = 2009

 Score =  270 bits (691), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 191/627 (30%), Positives = 313/627 (49%), Gaps = 87/627 (13%)

Query: 230  QATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE 289
            Q    + AK+EE     + L + AEAA+ +KS+FLA +SHEIRTP+N V+GM  +L DT 
Sbjct: 1252 QEVQKQTAKLEEARKNALSLAEDAEAANKSKSEFLANMSHEIRTPLNAVMGMGQLLADTP 1311

Query: 290  LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGK 349
            L+  Q++Y+     S K L+ +IN+VLD +K+E+GKLEL+  SFNL  +++D+ ++FS K
Sbjct: 1312 LNDQQRNYLAKIDRSSKLLLGIINDVLDVSKIEAGKLELDPHSFNLHDVVNDMRTMFSSK 1371

Query: 350  SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 409
            +Q K +EL +     +P  L+GD  R  Q+I NL+ N++KFTE GH+ + +    E    
Sbjct: 1372 AQKKRLELIIEADPDLPRALVGDSMRLEQVIANLLSNALKFTESGHVSLHINKARE---- 1427

Query: 410  IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469
                                                +TSP      D   L  SV D+G 
Sbjct: 1428 -----------------------------------AATSP------DSCRLRFSVTDSGI 1446

Query: 470  GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 529
            G+  E   R+F PF Q   S +R +GGTG+GL IS+ LV  M G +   S P  GSTF F
Sbjct: 1447 GMNEEQMGRLFNPFSQADSSTTRKYGGTGLGLVISRRLVEAMGGRLEVTSAPGEGSTFFF 1506

Query: 530  TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 589
            T      S  +       + ++P S+S     MK LVVD +     V R  ++     V 
Sbjct: 1507 TIELPKASDQTG------LADRPASLSD---NMKFLVVDDQEPARIVLREILESWNGDVV 1557

Query: 590  VVSDQLQCLSQIASGSK---IINMILVEQEV-WEKDTSVSTLFVNNLRKLG--CGFQSKL 643
              +   + + ++ +  K     + IL++ ++  E D   +   + +L + G   G ++ +
Sbjct: 1558 EAAGGRKAVEEVLAAQKQNRPFDFILMDWKMPGEMDGLEAIRHLKHLHETGTLTGDETPV 1617

Query: 644  FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG--VGNKGNIRNWELPSM 701
            F+++         + +D     + + KP+ +S L  ++ +A G  +G      +   PS 
Sbjct: 1618 FMISAYSEDEIPRSESDLYQ--AFLEKPVTASELFDAIMQATGKEMGTVQQTNSATTPSF 1675

Query: 702  SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761
            +      G  +L+V+DN +N +VA A +++  A V+  E G  A +     +  D   MD
Sbjct: 1676 A------GYTVLLVEDNEMNQEVATAFIEKTKAKVITAENGTDALQ-CYEENSIDLVLMD 1728

Query: 762  IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 821
            +QMP MDGF+AT  IR  E++                +  N HVPI+A++A V+ A  ++
Sbjct: 1729 LQMPVMDGFDATAEIRRREND----------------SEGNAHVPIIALSAAVLDADRKK 1772

Query: 822  CLRSGMDGYVSKPFEAEQLYREVSRFF 848
               +G DG++ KP ++++LY  + ++ 
Sbjct: 1773 AAEAGADGHLGKPIDSQELYAVMGQYL 1799


>gi|114566147|ref|YP_753301.1| signal transduction histidine kinase-like protein [Syntrophomonas
            wolfei subsp. wolfei str. Goettingen]
 gi|114337082|gb|ABI67930.1| multi-sensor hybrid histidine kinase [Syntrophomonas wolfei subsp.
            wolfei str. Goettingen]
          Length = 1442

 Score =  270 bits (691), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 190/635 (29%), Positives = 308/635 (48%), Gaps = 105/635 (16%)

Query: 228  IFQATVNRIAKVEEDYH---GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDM 284
            I +A  N IA+  E       + + K+ AE+A+ AKS FLA +SHEIRTPMNG+LG L++
Sbjct: 784  ILKAFSNSIAEAIERSQMEQKLAQAKEIAESANYAKSLFLANMSHEIRTPMNGILGFLEL 843

Query: 285  LMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLS 344
            L +TEL   QQDYV+ A  + + L+ LIN++LD +K+E+GKL +E + F +R +++D +S
Sbjct: 844  LGETELSTEQQDYVQEAHRASEILLYLINDILDFSKIEAGKLAMEEIPFRVRTVVEDAVS 903

Query: 345  LFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 404
            L + K+++KG+E+   I   VP+ ++GDP R RQI+ NL+ N++KFT  G I V V  + 
Sbjct: 904  LQAPKAREKGLEMHTLIKSNVPDEVVGDPARLRQILNNLLSNAVKFTHTGEILVIVETIN 963

Query: 405  EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSV 464
            E  D  E+  E+S                                               
Sbjct: 964  ESSDKAEIAFEVS----------------------------------------------- 976

Query: 465  EDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 524
             D+G GI  E   ++F PF Q   S +R +GGTG+GL+IS  LV  M+G +   S    G
Sbjct: 977  -DSGIGIAPEDMEKLFQPFTQADASTTRKYGGTGLGLAISYELVRLMEGTMQVKSKLGQG 1035

Query: 525  STFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL 584
            S F FTA F  G           +  +P    +E +G + L+VD      K+ R +++  
Sbjct: 1036 SKFYFTACFKPGLRKDT------LPFEP----AELKGARVLIVDDNSSNRKIIRTYLE-- 1083

Query: 585  GIQVEVVSDQLQCLSQIA-SGSKIINMILVEQEVWEKDTSVSTLFV--NNLRKLGCGFQS 641
                       QCL + + S  K I ++L    V   D  +    +   N  +L    ++
Sbjct: 1084 ---------DAQCLVEESDSAEKAITILLSASAVKSFDVVIVDFQMPAMNGHELAAALKA 1134

Query: 642  -------KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 694
                    L +L ++     A  + +       + KP++   L   +   +G+  + ++ 
Sbjct: 1135 IPSTRAIHLIMLTSAAQKGDARRAKEH-GFSGYLTKPVKRDELLQCISIVLGLKTEASLG 1193

Query: 695  NWELPSMSLRH--LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 752
            +  +   +++   +    + L+V+DN +N K+    L++ G        G +A + L   
Sbjct: 1194 DSIVTRYTIKENPIPARPRFLLVEDNEMNQKIIVKMLEKRGMYCDLACSGAEALKALQ-Q 1252

Query: 753  HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA 812
              +D  FMD QMPEMDG+E T  IR+ME         GE            H  I+AMTA
Sbjct: 1253 KDYDIVFMDCQMPEMDGYETTARIRQME---------GE----------ERHTIIVAMTA 1293

Query: 813  DVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
            + ++   E+CL++GMD Y+SKP + + L+  + ++
Sbjct: 1294 NAMEGDREKCLQAGMDDYISKPVDFQLLFNIIEQY 1328


>gi|443475197|ref|ZP_21065154.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
 gi|443019984|gb|ELS33998.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
          Length = 1403

 Score =  270 bits (690), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 196/635 (30%), Positives = 300/635 (47%), Gaps = 99/635 (15%)

Query: 228  IFQATV--NRIAKVEEDYHGMMELKKKAEAADVA---KSQFLATVSHEIRTPMNGVLGML 282
            ++QAT+      + E+ Y   +ELK+    A++A   KS FLAT+SHEIRTPMN VLGM 
Sbjct: 709  LYQATLLEQETLRREQLYLQNVELKEARHQAEIATKMKSAFLATMSHEIRTPMNAVLGMT 768

Query: 283  DMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 342
             +L DT+L   Q+D+V T + SG+ L++LINE+LD +K+E+ ++ELE +SF+L   +++V
Sbjct: 769  GLLADTKLSPLQRDFVETVRISGENLLTLINEILDFSKLEANEMELEEISFDLNTCVEEV 828

Query: 343  LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL 402
              L +  +Q+K +ELA  I   VP  L GD  R RQI+TNL+ N+IKFT +G + + V L
Sbjct: 829  TDLLAMLAQEKKLELAALIHQNVPTYLCGDVARLRQILTNLVSNAIKFTLQGEVIIKVSL 888

Query: 403  VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIV 462
             EE     ++E                                                 
Sbjct: 889  KEETESIAKIE------------------------------------------------F 900

Query: 463  SVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 522
             V DTG GI LE+Q ++F PF QV  S +R +GGTG+GL+I K +V  M GEIG  S   
Sbjct: 901  RVIDTGIGISLESQKKLFQPFTQVDASTTRKYGGTGLGLAICKQIVDLMGGEIGIDSEEG 960

Query: 523  IGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 582
             GS F F   F   SS        ++         + + ++ L+VD      K+  Y + 
Sbjct: 961  KGSQFWFQISFVKQSSA-------EIKQLEPRREVDLKDVRVLIVDDSETNCKILTYQLT 1013

Query: 583  RLGIQVEVVSDQLQCLS----QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638
               ++V+ V +    +S     IA G +    IL  Q       S+ +       K    
Sbjct: 1014 AWQMRVDAVKNASHVISILQAAIAEGDRYQLAILDMQMPDLDGESLGSQI-----KADPN 1068

Query: 639  FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNK------GN 692
             +    ++  S++          +     ++KP++ S L   L + +           G 
Sbjct: 1069 LKDTKLIMLTSLNQGGGINRVKELGFEFYLVKPIKQSRLLDVLMQVISTNPHYQNPVTGA 1128

Query: 693  IRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 752
            +R  + P      L    KILI +D+ +N KVA   L+ +G        GK+   LL   
Sbjct: 1129 LRTADRPITRTSKL----KILIAEDSLINQKVALHQLRSFGYDADVAGNGKEVLALLECI 1184

Query: 753  HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA 812
            H +D   MD QMPEMDG+E TK IR+++                    +   + I+AMTA
Sbjct: 1185 H-YDIILMDCQMPEMDGYETTKAIRQLDS-------------------TKSKIAIVAMTA 1224

Query: 813  DVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
            + ++   + CL SGM+ Y+SKP   E L  +++ +
Sbjct: 1225 NAMKEDRDRCLASGMNDYLSKPIRKEDLAHKLAEW 1259


>gi|428772393|ref|YP_007164181.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
            7202]
 gi|428686672|gb|AFZ46532.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
            7202]
          Length = 1402

 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 190/615 (30%), Positives = 307/615 (49%), Gaps = 97/615 (15%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++AEAA+ AKSQFLAT+SHEIRTPMN V+GM  +L+DTEL   QQ++    + S  +L+
Sbjct: 711  KEQAEAANQAKSQFLATMSHEIRTPMNAVIGMTGLLLDTELTPEQQEFTEIIRTSSDSLL 770

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            S+IN++LD +K+ESGKLELE   F+L  ++++ L L + K+  K +EL  ++   +  ++
Sbjct: 771  SIINDILDFSKIESGKLELEQQPFSLYQVIEESLDLLAPKASQKNIELVYFLDPDISPSI 830

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            IGD  R RQ++ NL+ N++KFT  G + ++V                     T+  + + 
Sbjct: 831  IGDVTRLRQVLVNLLSNAVKFTPTGEVILSV---------------------TIDSHSIG 869

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
            DR +S                        NL+  +EDTG GIP     R+F  F QV  S
Sbjct: 870  DRRYS------------------------NLLFVIEDTGIGIPRNRMDRLFKAFSQVDAS 905

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH-----N 544
             +R +GGTG+GL+I + LV  MKG +   S  +I   +       + S T          
Sbjct: 906  TTRNYGGTGLGLAICQKLVHLMKGNMWVESKGHIAGEYPPQWQITSHSETPGSKFCFTIK 965

Query: 545  SQQMNNQPNSVSSE---FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
            ++  +N P S+ ++    QG K L+VD   +  ++ R    + G++V + +   + L+ I
Sbjct: 966  TRFSSNIPPSIEAQNSFLQGKKVLIVDDNEVNRRMLRTQCDKFGLEVLITASGEETLALI 1025

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
            A     I++ +++ ++ + D +     ++ + K    ++S   +L +SI       +   
Sbjct: 1026 AEQPD-IDLAILDMQMPKMDGATVAKNISAMEK----YRSTPLILLSSIGHGEIEKALKE 1080

Query: 662  VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL-------LLGR---- 710
            V+  + ++KP++ S L   L + +        +N  LPS  L  L        +G     
Sbjct: 1081 VNWAATLIKPIKQSRLFYILSKVL--------QN-PLPSKPLNKLSPVSLTEAIGEEELS 1131

Query: 711  -----KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 765
                 KILI +DN +N KV    LKR G     V  G +  + L     +D   MD+QMP
Sbjct: 1132 VTSPLKILIAEDNIINQKVITNILKRLGYRADVVGNGLEVLDALR-RQSYDLILMDVQMP 1190

Query: 766  EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 825
            EMDG  AT+ IR +  N +N   +G+               I+AMTA+ ++   + CL +
Sbjct: 1191 EMDGLTATRQIRTL-WNSSNSDFQGQ------------RPCIIAMTANAMEGDRQRCLEA 1237

Query: 826  GMDGYVSKPFEAEQL 840
            GMD Y+SKP + E L
Sbjct: 1238 GMDDYLSKPVKVEAL 1252


>gi|428312486|ref|YP_007123463.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
 gi|428254098|gb|AFZ20057.1| PAS domain S-box [Microcoleus sp. PCC 7113]
          Length = 1949

 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 205/642 (31%), Positives = 313/642 (48%), Gaps = 71/642 (11%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K+ AEAA+ AKS+FLAT+SHEIRTPMN V+GM  +L+DTE+   Q  +V T + SG+AL+
Sbjct: 1161 KQAAEAANRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTEVTPQQHQFVETIRNSGEALL 1220

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            ++IN++LD +K+ESGKLELE   F LR  +++ L L + K+ +K +ELA  I  + P T+
Sbjct: 1221 TIINDILDFSKIESGKLELEEQPFKLRMCIEESLDLLAPKAAEKELELAYLIDSQTPVTI 1280

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS-SSKNTLSGYPV 428
             GD  R RQI+ NL+ N++KFT  G + V+V         + V+ E+   S     G+ +
Sbjct: 1281 AGDVTRLRQILVNLLSNAVKFTRSGEVTVSV-----TAKGVPVKHEVGRESVGNNPGFSI 1335

Query: 429  ADRCHSWKGFKTFNQDGSTSPFKSSSA------DLINLIVSVEDTGQGIPLEAQSRIFTP 482
            +   ++          G+     SS +          +  +V+DTG GIP E   R+F P
Sbjct: 1336 SPSPNTQPQLDKPCDPGTRQDTLSSVSVHPVPYPYYEIQFAVKDTGIGIPTERLDRLFQP 1395

Query: 483  FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV-FGNGSSTSN 541
            F QV  S SR +GGTG+GL ISK L   M G I   S    GS F FT +     SST  
Sbjct: 1396 FSQVDSSTSRHYGGTGLGLVISKRLCEMMGGRIWVESEVGKGSIFYFTVIAHAVYSSTPT 1455

Query: 542  EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
            + +  Q          + +G + L+VD      K+     +  G+         + L  +
Sbjct: 1456 DLDVAQ---------PQLEGKRLLIVDDNATNRKILTLQGKSWGMLTRAAHSGREALDWL 1506

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
            + G ++ ++ +++ ++   D          +RK   G+Q    ++  SI    ++  +  
Sbjct: 1507 SQG-ELFDLAILDMQMPGMD---GLTLATEIRK-KPGYQELPLVMLTSIGKPESSDPSQM 1561

Query: 662  VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL-------LGRKILI 714
                + + KP++ S L  SL + + +G    +R    P  SL   +       L  KIL+
Sbjct: 1562 SHFAAFLNKPIKQSQLYESLNQVL-LGQPIKVR----PLCSLYPEIDSNLAHKLPLKILL 1616

Query: 715  VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATK 774
             +DN VN +VA   L+R G     V  G +  E +     +D   MD+QMPEMDG  A  
Sbjct: 1617 AEDNVVNQQVALHLLQRLGYRADVVGNGLEVLEAVH-RQSYDVVLMDVQMPEMDGLTAAH 1675

Query: 775  IIREMEHNFNNRIR-RGEVSIEAYENV-----------------------------SNFH 804
             I + E +F   +   GE  I A+  V                             SN  
Sbjct: 1676 RISQ-ESSFAWELEAAGENLITAFPGVSLTETHQQSNSPTSTNRPPEKVPGQPNSKSNKR 1734

Query: 805  VPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
              I+AMTA+ +Q   E CL +GMD Y+SKP   ++L R +S+
Sbjct: 1735 PRIIAMTANAMQGDREMCLEAGMDDYISKPIRMKELVRALSK 1776


>gi|406998814|gb|EKE16674.1| hypothetical protein ACD_10C00859G0003 [uncultured bacterium]
          Length = 996

 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 198/634 (31%), Positives = 309/634 (48%), Gaps = 88/634 (13%)

Query: 221 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
           +A+L+G I   T  + A+VE     +++ +  AEAA  AKS FLA +SHEIRTPMNGV+G
Sbjct: 331 VAALLGTIIDITARKQAEVE-----ILQARDVAEAASQAKSDFLANMSHEIRTPMNGVIG 385

Query: 281 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
           M ++ +DT L   Q++Y+   ++S ++L+++IN++LD +K+E+GKL++E +SF+L  ++ 
Sbjct: 386 MTELALDTALTEEQREYLDIVKSSAESLLAIINDILDFSKIEAGKLQVEEISFDLHRVIA 445

Query: 341 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
           D L   + ++ +K +EL   +  +VP  + GDP R RQ++ NL+GN+IKFTE+G I +  
Sbjct: 446 DTLKTLALRAHEKNLELISEVMPKVPCHVFGDPSRIRQVLVNLLGNAIKFTEQGEISLRT 505

Query: 401 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 460
            L+ +VVD                        +++  F                      
Sbjct: 506 ELI-KVVDG-----------------------NAYIHF---------------------- 519

Query: 461 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520
             +V DTG GI  + Q  IF  F Q   S +R  GGTG+GLSIS++LV  M GEI   S 
Sbjct: 520 --AVSDTGVGIAPDKQELIFEAFSQEDTSTTRRFGGTGLGLSISRHLVALMGGEIWLESQ 577

Query: 521 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 580
              GSTF F+             ++Q +  +P +   E +G   LVVD      +V    
Sbjct: 578 LGRGSTFHFSLKLAI--------DTQPL--EPITRQIELRGRHILVVDDNATNRRVLSGL 627

Query: 581 IQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640
           +    ++ ++       L  +       + I+++ ++   D          LR       
Sbjct: 628 LAAWDVKTQLAESGAMALDIMRCAETSFDCIILDAQMPAMD---GYELARQLRAEHPQLP 684

Query: 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR--AMGVGNKGNIRNWEL 698
             L L ++++          G  I +   KP+ S  L ++L+R  AMG G     R+  L
Sbjct: 685 PMLMLSSSAMRGDEQRCQAAG--IDAYFSKPISSEDLLSALRRFFAMG-GQPLATRHTLL 741

Query: 699 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
               LR L     IL+V+D+ VN K+A   L+++G        G++A  +      FD  
Sbjct: 742 NRHVLRELQRSLNILLVEDHPVNQKLALGLLEKWGHQATLANNGQEALAIF-SESAFDLI 800

Query: 759 FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
            MD+QMP M G EAT  IR+ME    +R R                 PI+AMTA  +Q  
Sbjct: 801 LMDMQMPVMGGLEATLRIRQMELADESRRR----------------TPIIAMTASAMQGD 844

Query: 819 YEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
            E CL  GMD Y+SKP +A +L  ++  F   +P
Sbjct: 845 REACLGVGMDEYLSKPIKARELLEKLLSFGAQMP 878


>gi|428215971|ref|YP_007089115.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
 gi|428004352|gb|AFY85195.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
          Length = 1259

 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 200/624 (32%), Positives = 310/624 (49%), Gaps = 81/624 (12%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + ++K+ A AA+ AKS+FLA++SHEIRTPMNGVLGM  +L+ TEL+  Q+ Y +T  +S 
Sbjct: 551  LAQMKQAAVAANRAKSEFLASMSHEIRTPMNGVLGMTGLLLATELNPQQKHYAQTIFSSA 610

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            + L+++IN++LD +K+E+ ++ L  ++F L   ++ V+ L    +Q+KG++L + I   V
Sbjct: 611  EHLLTVINDILDFSKLEAREMHLNPINFELDECIESVVDLMVAPAQEKGLDLGICIDRNV 670

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  L GDP R RQI+ NL+ N+IKFTE G + + V  V E             + +    
Sbjct: 671  PRHLFGDPARLRQILLNLVNNAIKFTEVGEVSIAVCAVSE------------DATSKADS 718

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
             P A R                        + + L  +V DTG GI  + Q+++F  F Q
Sbjct: 719  VPPAQR------------------------NPVTLRFAVTDTGIGILPQNQTKLFQSFSQ 754

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
            V  S +R +GGTG+GL+ISK LV  M+G+IG  S  N GSTF FT           + N 
Sbjct: 755  VDSSSTRQYGGTGLGLAISKQLVELMEGKIGVESELNQGSTFWFTVTL------PVQQNP 808

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD----QLQCLSQI 601
             +  N P + + E + +K LV D   +  +  ++   R GI V+ V+D         +  
Sbjct: 809  TEKENSPGT-TLEMESLKLLVADESAMHRQSVQHFADRWGITVDQVTDPQNALSALRAAA 867

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
            A G+   + +L    + E + S     +N    L     ++   LA     + A      
Sbjct: 868  AEGTP-YHALLASVNLLEGEGSTLLQALNQEPNLAT---TRTIALAQFNQRAIAEALAPH 923

Query: 662  VSIPSVIMKPLRSSMLAASLQRAM----GVGNKGNIRNWELPSMSLRHL----LLGRKIL 713
              + + I+KPLR S   ASLQ+ +     + ++      E  S S   L    +   KIL
Sbjct: 924  W-VSAYIIKPLRGSQFVASLQQVLEPKVALSDRPRGSQGEPFSGSAFSLAPPPVCPLKIL 982

Query: 714  IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
            I +D+ +N +V    L   G    CV  G +A + L     +D  FMD QMP+ DG+E T
Sbjct: 983  IAEDHEINQQVIVFQLNTLGYHADCVNNGLEALDRLA-CEDYDLVFMDCQMPQKDGYEVT 1041

Query: 774  KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
            + +R+ E N     RR              H  ++A+TA  + +  ++CL +GMD Y+SK
Sbjct: 1042 RELRQSEGN-----RR--------------HTIVIALTAHALNSDRQKCLEAGMDDYLSK 1082

Query: 834  PFEAEQLYREVSRFFPP-IPDRSP 856
            P   EQL   + R+ P  IP + P
Sbjct: 1083 PVLLEQLQAALDRWIPQIIPLQCP 1106


>gi|427707466|ref|YP_007049843.1| multi-sensor hybrid histidine kinase [Nostoc sp. PCC 7107]
 gi|427359971|gb|AFY42693.1| multi-sensor hybrid histidine kinase [Nostoc sp. PCC 7107]
          Length = 1567

 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 199/665 (29%), Positives = 321/665 (48%), Gaps = 91/665 (13%)

Query: 209  LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 268
            L A++  +GI   A    H+ +    +  ++      + + K++AEAA+ AKS+FLA +S
Sbjct: 842  LEAVAAQVGI---ALAQAHLLEQETRQREELTLKNFALQQAKRQAEAANRAKSEFLAMMS 898

Query: 269  HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 328
            HEIRTPMN V+GM ++L+DT+L   Q+D+V T   SG AL+++IN++LD +K+ESG+LEL
Sbjct: 899  HEIRTPMNAVIGMTELLLDTDLTPQQRDFVETVHTSGDALLTIINDILDFSKIESGRLEL 958

Query: 329  EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 388
            E   F+L+A ++ V+ L + K+  K +EL   I  +VP  +IGD  R RQ++ NL+ N+I
Sbjct: 959  EEKPFDLKACVEQVIDLLAPKAAQKQIELIYLIHPQVPTQIIGDITRLRQVLMNLLNNAI 1018

Query: 389  KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 448
            KFT++G + ++VY                                     +T N D S  
Sbjct: 1019 KFTQQGEVVLSVYA---------------------------------NHLETQNLDTSC- 1044

Query: 449  PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 508
                       ++ S++DTG GI  E  +R+F PF Q   S++R +GGTG+GL IS+ L 
Sbjct: 1045 ----------KILFSIQDTGIGITPEKMARLFQPFAQADASMTRLYGGTGLGLVISQRLS 1094

Query: 509  GRMKGEIGFVSIPNIG---------STFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS-- 557
              M G +   S   IG         S    +    +G++      S  + N P+S  +  
Sbjct: 1095 EMMNGSLWVESRGCIGGNPDPGWQNSKPVLSTFSHHGATFYFTITSTVLTNAPSSEVTTS 1154

Query: 558  --EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQ 615
              +  G + L+VD  P  +K+    +Q   +Q  +       L+ +A G +    IL   
Sbjct: 1155 VVQLAGKRLLIVDDNPTNSKILSLQVQFWQMQTYIAESSAAALALLAQGMEFDIAILDLP 1214

Query: 616  EVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS 675
                    +  L +    +   G Q+   +L  S+ +       + V +   + KP++ S
Sbjct: 1215 R-----PKIDGLELARAIRQQPGGQNLPLVLLTSLGTPEICRDFNDVGLVVCLNKPIKQS 1269

Query: 676  MLAASLQRAMGVG-NKGNIRNWELPSMSLRHLL--LGRKILIVDDNNVNLKVAAAGLKRY 732
             L   L    G      NI    +    + HL   +  +IL+ +D+ VN KVA   L++ 
Sbjct: 1270 QLHYVLTHTCGNNLLPANISRAYISPFDI-HLAEKMPLRILVAEDSLVNQKVALLMLQKI 1328

Query: 733  GAAVVCVERGKKATELLMPPHQ-FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 791
            G  V  V  G++  + L   HQ +D   MDI MPEMDG E ++II +          + E
Sbjct: 1329 GYQVDVVGDGREVIQALQ--HQPYDVVLMDIHMPEMDGLETSQIISQ----------QWE 1376

Query: 792  VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851
             S   Y         I+A+TA+ ++   E CL +GMD Y+SKP +  +L + + +  P I
Sbjct: 1377 ASTRPY---------IIAITANAMRGDREACLAAGMDDYISKPIQMAELVKALRKCQPFI 1427

Query: 852  PDRSP 856
            P + P
Sbjct: 1428 PTKEP 1432


>gi|37677132|ref|NP_937528.1| sensory box sensor histidine kinase/response regulator [Vibrio
            vulnificus YJ016]
 gi|37201677|dbj|BAC97498.1| sensory box sensor histidine kinase/response regulator [Vibrio
            vulnificus YJ016]
          Length = 1328

 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 194/611 (31%), Positives = 297/611 (48%), Gaps = 103/611 (16%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + E K  A+A   AK  FLA +SHEIRTPMN +LGM  + ++TELD +Q+ Y+     S 
Sbjct: 593  LREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTELDPSQRKYLTRINESA 652

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            K L+ +IN++LD +K+E+GKL +E++ F+L  + +++ ++ S K+Q+KG+E  + I  RV
Sbjct: 653  KNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFKAQEKGIEFLLDIDPRV 712

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  L+GDP R  Q++ NL GN++KFTEKG I V+V                         
Sbjct: 713  PVGLVGDPLRLGQVLVNLCGNAVKFTEKGEILVSVM------------------------ 748

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                   P +S S+D + L  SV+DTG GI  E  + +F  F Q
Sbjct: 749  -----------------------P-ESQSSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQ 784

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               SI+R  GGTG+GLSISK LV  M G++   S   +GSTFTFT   G   +       
Sbjct: 785  ADTSITREFGGTGLGLSISKQLVELMGGQLSVSSAVGMGSTFTFTIHCGLQEA------- 837

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
             +M +    +S    G +AL+VD       +    +  +    + VS+  + L ++   +
Sbjct: 838  -KMRDIAKPISG-LAGKRALIVDDNDSARNILMTLLSAMQFDAKAVSNGFEALDELRQST 895

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS--ISSSRANTSTDGVS 663
               +M+ V+   W          +N L  L    Q +L     +  +++     S D  S
Sbjct: 896  --FDMVFVD---WNMPG------MNGLELLQTAHQERLLAETKNFLVTAYGREISMDENS 944

Query: 664  ---IPSVIMKPLRSSMLAASLQRAMG---VGNKGNIRNWELPSMSLRHLLLGRKILIVDD 717
               + S+I+KP+  S L  ++  + G   V        +E P         G+ +L+V+D
Sbjct: 945  SKLVDSLIVKPVNPSNLLDAIMDSYGIEHVTRSSTTATFEKPVFD------GQTLLLVED 998

Query: 718  NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
            N VN +VA   L      ++  + GK A E L   H  D   MD+QMP MDG  ATK IR
Sbjct: 999  NEVNQEVAIGLLNGTNLNIITADNGKLAIEAL-ENHPIDLVLMDMQMPVMDGITATKAIR 1057

Query: 778  EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
            E          R E +           +PI+AMTA+ +Q+  E C  +GM+ +V+KP   
Sbjct: 1058 E----------RAEWAT----------LPIVAMTANAMQSDVERCHEAGMNDHVAKPINV 1097

Query: 838  EQLYREVSRFF 848
              LY+ +S++ 
Sbjct: 1098 HNLYQVLSQYL 1108


>gi|326424323|ref|NP_762902.2| chemotaxis protein CheY [Vibrio vulnificus CMCP6]
 gi|319999709|gb|AAO07892.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
          Length = 1328

 Score =  270 bits (689), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 194/607 (31%), Positives = 296/607 (48%), Gaps = 103/607 (16%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K  A+A   AK  FLA +SHEIRTPMN +LGM  + ++TELD +Q+ Y+     S K L+
Sbjct: 597  KDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTELDPSQRKYLTRINESAKNLL 656

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
             +IN++LD +K+E+GKL +E++ F+L  + +++ ++ S K+Q+KG+E  + I  RVP  L
Sbjct: 657  GIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFKAQEKGIEFLLDIDPRVPVGL 716

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GDP R  Q++ NL GN++KFTEKG I V+V                             
Sbjct: 717  VGDPLRLGQVLVNLCGNAVKFTEKGEILVSVM---------------------------- 748

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                               P +S S+D + L  SV+DTG GI  E  + +F  F Q   S
Sbjct: 749  -------------------P-ESQSSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQADTS 788

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            I+R  GGTG+GLSISK LV  M G++   S   +GSTFTFT   G   +        +M 
Sbjct: 789  ITREFGGTGLGLSISKQLVELMGGQLSVSSAVGMGSTFTFTIHCGLQEA--------KMR 840

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
            +    +S    G +AL+VD       +    +  +    + VS+  + L ++  G+   +
Sbjct: 841  DIAKPISG-LAGKRALIVDDNDSARNILMTLLSAMQFDAKAVSNGFEALDELRQGA--FD 897

Query: 610  MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS--ISSSRANTSTDGVS---I 664
            M+ V+   W          +N L  L    Q +L     +  +++     S D  S   +
Sbjct: 898  MVFVD---WNMPG------MNGLELLQTAHQERLLAETKNFLVTAYGREISMDENSSKLV 948

Query: 665  PSVIMKPLRSSMLAASLQRAMG---VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 721
             S+I+KP+  S L  ++  + G   V        +E P         G+ +L+V+DN VN
Sbjct: 949  DSLIVKPVNPSNLLDAIMDSYGIEHVTRSSTTVTFEKPVFD------GQTLLLVEDNEVN 1002

Query: 722  LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
             +VA   L      ++  + GK A E L   H  D   MD+QMP MDG  ATK IRE   
Sbjct: 1003 QEVAIGLLNGTNLNIITADNGKLAIEAL-EHHPIDLVLMDMQMPVMDGITATKAIRE--- 1058

Query: 782  NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
                   R E +           +PI+AMTA+ +Q+  E C  +GM+ +V+KP     LY
Sbjct: 1059 -------RAEWAT----------LPIVAMTANAMQSDVERCHEAGMNDHVAKPINVHNLY 1101

Query: 842  REVSRFF 848
            + +S++ 
Sbjct: 1102 QVLSQYL 1108


>gi|392373817|ref|YP_003205650.1| Sensor protein [Candidatus Methylomirabilis oxyfera]
 gi|258591510|emb|CBE67811.1| putative Sensor protein [Candidatus Methylomirabilis oxyfera]
          Length = 1049

 Score =  270 bits (689), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 191/619 (30%), Positives = 304/619 (49%), Gaps = 94/619 (15%)

Query: 245  GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
             M + K  AEAA  AK +FLA +SHEIRTP+N ++GM ++ +DT L   Q+++++  Q+S
Sbjct: 505  AMQQAKSVAEAASRAKGEFLAKMSHEIRTPLNAIIGMTELTLDTALTTEQREFLQVVQSS 564

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             +AL+++IN++LD +++E+G++ +E  +F+LR +++ V  + S ++Q KG+EL  Y+   
Sbjct: 565  SEALLTVINDILDLSRIEAGQMAIEETAFHLREVVEGVAEVLSIRAQKKGLELTCYVDPA 624

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  ++GDP R RQ++ NL+GN+IKFTE+G + +        V+  +VE           
Sbjct: 625  LPSRVLGDPMRLRQVLVNLVGNAIKFTERGEVTIQ-------VERTQVE----------- 666

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                   +P +      I + +SV DTG GIP   Q+RIF PF 
Sbjct: 667  -----------------------APGR------IGVHISVADTGIGIPTHQQARIFDPFA 697

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   + +R  GG+G+GLSISK L+  M G I   S    GSTF    V      T  E  
Sbjct: 698  QADATTARRFGGSGLGLSISKALMELMGGRIWVESEVGKGSTFHCDLVV-----TVAEPE 752

Query: 545  SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
            ++ +         + +G+  LVVD  P    + R  +   G+ VE  +   + L+ + + 
Sbjct: 753  AETVRAG-RETYPDLRGVAVLVVDDNPTNRLILRRTLHTWGMTVEEAAGGEEALALLRTS 811

Query: 605  SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
                 +++++  + + D +     +    +L      KL +L++      A     G+++
Sbjct: 812  HAGYQIVILDHHMPDMDGAAVARAIRQDPRLQ---DIKLVMLSSWEGLPTATREDLGITV 868

Query: 665  PSVIMKPLRSS----MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
              V+ KP++ S    ML   L+RA             +P    R   L R IL+V+DN  
Sbjct: 869  --VLTKPVKQSKLLDMLMGLLRRAEEAEAPAEP---SIPEA--RRPTLQRHILLVEDNVD 921

Query: 721  NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR--E 778
            N  +    L++ G  VV +     A    +   ++D   MD+QMPEMDGFEAT+ IR  E
Sbjct: 922  NQNLVRRILEKVGYWVV-IAGNGAAAVNAVRQARYDLILMDVQMPEMDGFEATRAIRSWE 980

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
             EH                       VPI+AMTA  I    E+CL  GMD Y+SKP + +
Sbjct: 981  REHGVGR-------------------VPIIAMTAHAIAGYREQCLEQGMDDYLSKPLKKQ 1021

Query: 839  QLYREVSRFF-----PPIP 852
             L   V R+      PP+P
Sbjct: 1022 VLLDTVGRYLANDENPPLP 1040


>gi|157960457|ref|YP_001500491.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
            700345]
 gi|157845457|gb|ABV85956.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
            700345]
          Length = 1765

 Score =  269 bits (688), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 186/612 (30%), Positives = 294/612 (48%), Gaps = 103/612 (16%)

Query: 245  GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
             + + K  A+AA+ AKS FLA +SHEIRTPMN ++GM  + + TELD  QQ+Y++    +
Sbjct: 1022 ALKQAKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDAKQQNYIQKIDRA 1081

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K+L+ +IN++LD +K+E+GKL++E+V F L  +L+D+  +FS K+ DK +EL   ++  
Sbjct: 1082 SKSLLGIINDILDFSKIEAGKLDIESVDFQLDTLLEDLSDMFSVKASDKRLELLFAVAPN 1141

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  L+GDP R  Q++ NLM N+IKFTE+G + +++  +E V D I              
Sbjct: 1142 IPRHLLGDPLRLSQVLINLMNNAIKFTEQGEVLLSISQLERVEDDIV------------- 1188

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                               L  SV D G G+  E ++R+F  F 
Sbjct: 1189 -----------------------------------LRFSVRDNGIGLTEEQRNRLFKSFS 1213

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   S +R +GGTG+GL+ISK LV  M GEIG  S    GSTF F+              
Sbjct: 1214 QADTSTTRKYGGTGLGLAISKQLVELMGGEIGVESQFGNGSTFFFSVRL----------- 1262

Query: 545  SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV---SDQLQCLSQI 601
             +  +N+   V  E +GM+ LV D       + R  ++ +G  V+ V   SD ++     
Sbjct: 1263 -KVADNKLLKVKHEIEGMRILVADDNATARDILRTTLESMGFVVDAVKSGSDAIERCQHT 1321

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT---- 657
                 +I+  + E              +N L      F  +       I S+ AN     
Sbjct: 1322 HYPVALIDWQMPE--------------MNGLEAAEVIFAEQETPPKVLIVSAHANAEFLE 1367

Query: 658  STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP-SMSLRHLLLGRKILIVD 716
              +   I   I KP+ +S L   +  ++G      +R      S  L   L G++IL+V+
Sbjct: 1368 QIERSGIAGYITKPISASRLLDGIMSSLGKNGTMAVRRQGADISQELLGQLQGKRILLVE 1427

Query: 717  DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
            DN++N +VA   L++ G  +   + G+ A E L     FD   MD QMP MDG++AT+ +
Sbjct: 1428 DNDMNQEVATEFLEQVGVVLSIADNGQIALEKL-AMQSFDLVLMDCQMPVMDGYQATREL 1486

Query: 777  REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
            R++    N                    +P++AMTA+ +    E CL +GM+ +++KP E
Sbjct: 1487 RKLPGLAN--------------------LPVIAMTANAMAGDREMCLDAGMNDHIAKPIE 1526

Query: 837  AEQLYREVSRFF 848
               LY  + ++ 
Sbjct: 1527 VSLLYSRLLQYL 1538


>gi|427730175|ref|YP_007076412.1| PAS domain-containing protein [Nostoc sp. PCC 7524]
 gi|427366094|gb|AFY48815.1| PAS domain S-box [Nostoc sp. PCC 7524]
          Length = 1712

 Score =  269 bits (688), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 205/668 (30%), Positives = 326/668 (48%), Gaps = 112/668 (16%)

Query: 209  LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 268
            L A++  +GI   A    H+ +    +  ++      + + K+ AEAA+ AKS+FLA +S
Sbjct: 967  LEAVAAQLGI---ALAHAHLLEQETRQREELTVKNFALEQAKRAAEAANRAKSEFLAMMS 1023

Query: 269  HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 328
            HEIRTPMN V+GM ++L++TEL   Q+D+V T   S +AL+++IN++LD +K+ESGKLEL
Sbjct: 1024 HEIRTPMNAVIGMTELLLNTELTTQQRDFVETVLTSSEALLTIINDILDFSKIESGKLEL 1083

Query: 329  EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 388
            EA  F+LR  ++ V+ L + K+  K +ELA  I  +VP  ++GD  R RQI+ NL+ N+I
Sbjct: 1084 EAQPFDLRTCVEQVIDLLAPKAAHKDIELAYLIHPQVPTQIVGDLTRLRQILMNLLNNAI 1143

Query: 389  KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 448
            KFTEKG          EV+ S+  E             PV                 +T 
Sbjct: 1144 KFTEKG----------EVILSVRAE-------------PV-----------------TTH 1163

Query: 449  PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISK--- 505
              K+S      ++ +++DTG GIP +   R+F PF+Q   S++R +GGTG+GL ISK   
Sbjct: 1164 KAKNSC----QILFTIKDTGIGIPPDKMGRLFQPFVQADASMTRKYGGTGLGLVISKRLG 1219

Query: 506  -----YLVGRMKGEIG-------------FVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 547
                 YL    +G +G               ++P  GSTF F       + T+   +   
Sbjct: 1220 EMMSGYLWVESQGCVGGNPPPQWQAKKPVLSNLPYPGSTFYF-------AMTAQVVDHAD 1272

Query: 548  MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 607
             N    +   + +  + L+VD  P   K+     +   +Q        + L+ I  G + 
Sbjct: 1273 SNELTLTYPIQLRNKRLLIVDDNPTNRKILHLQTEPWQMQTYTAQSGAEALALIDQGMQ- 1331

Query: 608  INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
             ++ +++ ++ E D          +R+   G+Q    ++  S      + +   +   + 
Sbjct: 1332 FDIAILDMQMPEMD---GLTLAQEIRQRS-GYQYLPLVILTSWGQPDNDNALRNLGFTAY 1387

Query: 668  IMKPLRSSMLAASLQRAMGVGNKGNIRN---WELPSMSLRHLL--LGRKILIVDDNNVNL 722
            + KP++ S L   L  A  + N+  IR    +  P    +HL   L  +IL+ +D  VN 
Sbjct: 1388 LHKPIKQSQLYDVL--ACTLENQP-IRAKLPYPYPPQINQHLAEQLPLRILLAEDIVVNQ 1444

Query: 723  KVAAAGLKRYGAAVVCVERGKKATELLMPPHQ-FDACFMDIQMPEMDGFEATKIIREMEH 781
            KVA   LK+ G     V  G +   +L   HQ FD   MD+ MPEMDG E ++ IR+   
Sbjct: 1445 KVALLMLKKMGYRADVVANGLEVLAVLQ--HQPFDVVLMDVNMPEMDGLETSRRIRQ--- 1499

Query: 782  NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
             +N+R          Y         I+AMTA+ +Q   E CL +GMD Y+SKP + E+L 
Sbjct: 1500 TWNDR---------PY---------IIAMTANAMQGDREACLAAGMDDYISKPLQLEELA 1541

Query: 842  REVSRFFP 849
            + + +  P
Sbjct: 1542 KALGKCQP 1549


>gi|389875495|ref|YP_006373230.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
 gi|388530450|gb|AFK55646.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
          Length = 1552

 Score =  269 bits (688), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 193/605 (31%), Positives = 295/605 (48%), Gaps = 85/605 (14%)

Query: 247  MELKK-KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            +EL K  AE A+ AKS FLA +SHEIRTPMNGV+GM  +L+ T+L   Q+ +  T + S 
Sbjct: 895  LELSKIVAETANQAKSDFLANMSHEIRTPMNGVMGMTHILLGTDLTPEQRGHAETVRESA 954

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            +AL+ +I+++LD +K+E+ ++ELE + F L  +L+ V ++ + +++DKG+E+A Y  +  
Sbjct: 955  EALLGVIDDILDISKLEAERVELEHIPFVLGDVLEGVAAILAPRARDKGIEIACYPDEDA 1014

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
                +GDP R RQI+ NL GN++KFTE+GH+ V   +   + D                 
Sbjct: 1015 GGVWVGDPTRLRQILLNLAGNAVKFTERGHVTVGASVGAGLNDG---------------- 1058

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                 R H                          L   V DTG G+  E   R+F  F Q
Sbjct: 1059 -----RWH--------------------------LRFEVRDTGIGMTAEQAGRLFRKFSQ 1087

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               SI+R  GGTG+GL+IS+ L+  M G I   S    GS F F  V   G+        
Sbjct: 1088 ADASITRRFGGTGLGLAISQKLMDLMGGSITVESRIGEGSVFRFDVVLERGTEAPLRPTE 1147

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG- 604
            +        +    +GM+AL+VD   +  ++  +H+ +LG+ V+  SD    LS I    
Sbjct: 1148 E--------IGDHLRGMRALIVDDLAVNRRILAHHLVQLGMIVDEASDVASSLSVIEEQR 1199

Query: 605  --SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
              S++I++++ +  +      ++ + +    ++   F+    +LA    +S   T     
Sbjct: 1200 RRSQMIDLVITDYNL----GGMNGVELAEWLRMNSHFRGVRLILA----ASELPTVDKLQ 1251

Query: 663  SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
            S  +V+ KP+R   L  +L RA G+ ++    +    +        GR +L+V+DN VN 
Sbjct: 1252 SFDAVVAKPIRGRELMVALARAFGIRDEETAPSSSAATQERALSGDGRHVLLVEDNAVNQ 1311

Query: 723  KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
             VA   L   G  V  V  G++A        QFD  FMD+QMP MDG EAT+ IR     
Sbjct: 1312 TVARTILSDAGYVVTIVGDGEQAVSACATT-QFDIVFMDVQMPVMDGMEATRRIR----- 1365

Query: 783  FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                      + EA E      V I+AMTA+ +    EE L  GMD +V KPF A QL  
Sbjct: 1366 ----------AAEAREGRD--RVAIVAMTANAMSGMREEYLAVGMDDFVPKPFAAPQLLE 1413

Query: 843  EVSRF 847
              +R+
Sbjct: 1414 AAARW 1418


>gi|347731876|ref|ZP_08864962.1| response regulator [Desulfovibrio sp. A2]
 gi|347519345|gb|EGY26504.1| response regulator [Desulfovibrio sp. A2]
          Length = 1531

 Score =  269 bits (688), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 184/620 (29%), Positives = 292/620 (47%), Gaps = 102/620 (16%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            ++  K+ AE A   KS FLA +SHEIRTPMN ++G+  + + T LD  Q DYVR  +ASG
Sbjct: 715  LLRAKEMAEEATRLKSDFLANMSHEIRTPMNAIIGLAHLALKTNLDPRQADYVRKIRASG 774

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            + L+ ++N++LD +K+E+GKL +E   F L  +LD V +L S K+  KG+E  + ++  V
Sbjct: 775  QHLLGILNDILDFSKIEAGKLTVENTEFELETVLDTVANLVSEKAAAKGLEFVLDVAADV 834

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  L GDP R  QI+ N   N++KFTE+G I V V  VE+                    
Sbjct: 835  PPVLRGDPLRLGQILINYANNAVKFTERGEIVVHVEAVEKT------------------- 875

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                             QD               L  +V DTG G+  E ++R+F  F Q
Sbjct: 876  ----------------GQDAL-------------LRFAVRDTGIGLTPEQKARLFVSFQQ 906

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               S +R +GGTG+GL+I+K L   M G++G  S P  GSTF FTA  G GS        
Sbjct: 907  ADTSTTRKYGGTGLGLAIAKKLADLMGGDVGVESTPGGGSTFWFTARLGLGS-------- 958

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL---GIQVEVVSDQLQCLSQIA 602
                 +      + +G++ LVVD  P    V  + ++ +    ++ +     L+ + +  
Sbjct: 959  ---GRRTLVPRIDLRGLRVLVVDDNPQARTVLAHMLEGMTFRTVEADGGESALRVMDEAR 1015

Query: 603  SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
            +      M+ ++   W+            +R L       +     +        +++GV
Sbjct: 1016 AAGAPFGMVFLD---WQMPGMDGLETARRIRALAPELPVAIV---TAHGREEIFAASEGV 1069

Query: 663  SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR-------------HLLLG 709
             + +V++KP++ S+L  +  R +G     +    E  S S R               L G
Sbjct: 1070 GVDAVLVKPVQPSLLFDTAMRLLGAAQPASRPGGESESPSARSPGAQPGEPPAQLQGLRG 1129

Query: 710  RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
             ++L+V+DN +N +VA   L   G A    E G +A  ++M    +D   MD+QMP MDG
Sbjct: 1130 ARVLLVEDNELNREVALGLLGEAGLAPDAAEDGAQAVRMVM-EGDYDLVLMDVQMPVMDG 1188

Query: 770  FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
            +EAT+ IR                      +    +PI+AMTA+ +Q   E CL +GM+ 
Sbjct: 1189 YEATRAIR--------------------RTLGPDRLPIVAMTANAMQGDREACLATGMND 1228

Query: 830  YVSKPFEAEQLYREVSRFFP 849
            +V+KP + ++L+  + R+ P
Sbjct: 1229 HVAKPIDPDELFAALIRWLP 1248


>gi|150017029|ref|YP_001309283.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903494|gb|ABR34327.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 1083

 Score =  269 bits (688), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 180/606 (29%), Positives = 311/606 (51%), Gaps = 85/606 (14%)

Query: 238 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           KV+E  + ++  K+ AE A++AKSQFLA +SHEIRTP+NG++G L +L  T+LD TQQDY
Sbjct: 425 KVKERTNELIIAKEAAEDANMAKSQFLANMSHEIRTPLNGIVGFLSILEKTDLDSTQQDY 484

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           + T Q S + L+ +IN++LD +K+E+G++E+E V+F++R++++  + L+  K+++KG+EL
Sbjct: 485 IETIQTSSETLLVVINDILDISKIEAGRMEIEKVAFDIRSVIESTIFLYDAKAREKGLEL 544

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I+  +P  L+GDP + RQII+NL+ N++KFT  G +F+ V +++E    +++  E+ 
Sbjct: 545 NMLINSAIPSCLVGDPTKIRQIISNLVSNAVKFTHNGEVFIEVSVIKETNTEVQLYFEIR 604

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
            +   ++   ++      K FK F+Q  S+S                             
Sbjct: 605 DTGIGMNEEEIS------KLFKPFSQADSSS----------------------------- 629

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
                        +R +GGTG+GL+I K +V  M G I   S+ N G+TF F  +     
Sbjct: 630 -------------TRKYGGTGLGLAICKKIVEMMGGTISVKSVKNRGTTFCFDLLL---- 672

Query: 538 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
               + + Q +   P   S  F+G + LV+D   +   +++ +++ +G  ++        
Sbjct: 673 ----DKSEQSVIQMPPDYSI-FKGKRILVIDDYEMNRYIAKVYLEEVGCMIDEAESLESA 727

Query: 598 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 657
           LS + +  K  N IL++ ++ E         V  +++ G      L LL +  ++S A  
Sbjct: 728 LSMLINNRKAYNTILIDYQMKE---ITGFELVEIMKERGLINDIPLILLTSVTANSEARI 784

Query: 658 STDGVSIPSVIMKPL-RSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KILI 714
           + +       I KP  R  +L        G G+K    +  +   ++      +  KIL+
Sbjct: 785 AKEN-KFSGYISKPYKRGDLLDCVAMVIKGDGSKIYNNDVFITKQNVEEAKYNKKIKILL 843

Query: 715 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATK 774
           V+DN++N+K     LK  G        G KA +      ++D  FMD QMP MDG+EAT+
Sbjct: 844 VEDNDINIKFFVNSLKLNGLTCDIAIDGAKALKAC-ENKEYDIIFMDCQMPVMDGYEATR 902

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
            I               + + +Y+N     VP++AMTA  ++    +CL +GM  Y+SKP
Sbjct: 903 KI---------------LLLRSYKN-----VPVIAMTAYSMKDDEIKCLEAGMIDYLSKP 942

Query: 835 FEAEQL 840
           F  +Q+
Sbjct: 943 FTVDQV 948


>gi|451947711|ref|YP_007468306.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
           10523]
 gi|451907059|gb|AGF78653.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
           10523]
          Length = 714

 Score =  269 bits (688), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 189/614 (30%), Positives = 295/614 (48%), Gaps = 98/614 (15%)

Query: 248 ELKKK---AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
           EL+K    AE+A VAKS+FLA++SHEIRTPMNGV+G  +ML+ TELD  Q+D   T + S
Sbjct: 182 ELRKAKVAAESASVAKSEFLASMSHEIRTPMNGVIGFTEMLLQTELDEEQRDSAETIKRS 241

Query: 305 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
           G+AL+ LIN++LD +KVE+G++ LE + F+      DV  L   +   K +E+   I D 
Sbjct: 242 GEALLGLINDILDFSKVEAGQMSLEYIDFDPEITAHDVCELVRPRVSGKPIEVLCKIDDN 301

Query: 365 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
           +P  + GDPGRFRQ++ NL+GNS KFTEKG + +T+ + EE              KN   
Sbjct: 302 LPANVCGDPGRFRQVLLNLLGNSAKFTEKGELELTINVEEE------------DDKN--- 346

Query: 425 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                            I L   + DTG GI       IF  F 
Sbjct: 347 ---------------------------------IKLHALIRDTGIGIDSSKCESIFEAFK 373

Query: 485 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
           Q   + +R +GGTG+GLSI + +   M G +   S    GSTF FTA+    SS S    
Sbjct: 374 QEDGTTTRKYGGTGLGLSICRKIASLMDGRVWVESTKGKGSTFHFTAMM-RKSSISRAKT 432

Query: 545 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
            +Q++          +G + L+VD      ++  + +   GI+   + D+ Q ++ +   
Sbjct: 433 LKQLD---------LEGTRMLIVDDNAANNEILVHLLNNAGIKTTALLDETQTMATLKEA 483

Query: 605 SKI-----INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTST 659
            +      + +I ++            +  +NL+     F      LA + S+ +     
Sbjct: 484 EECGAPFDLAIIDLQMPTITGFELARIIRESNLKSRDIPF------LAYTSSTEKIAKKC 537

Query: 660 DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE---LPSMSLRHLLLGR-KILIV 715
                 + + KP R ++L  +L R +G G        E   +   S+R  +    +IL+V
Sbjct: 538 KDAGFTAFLNKPARRAILLRTLSRTLGTGGDEIDPAAEKKLVTQYSVREEIKQSIRILLV 597

Query: 716 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP-PHQFDACFMDIQMPEMDGFEATK 774
           +DN VN K+A+  L + G  V     GK A ++    P  FD   MD+QMPEMDG+EAT+
Sbjct: 598 EDNLVNQKLASMILTKAGYNVEVAANGKIAVDMFSSTPDLFDTILMDVQMPEMDGYEATR 657

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
            IR++ +                       +PILAMTA+ ++   E CL +GM+ Y++KP
Sbjct: 658 QIRKLGYT---------------------SIPILAMTANAMKGDRELCLEAGMNDYITKP 696

Query: 835 FEAEQLYREVSRFF 848
            + + ++  + ++ 
Sbjct: 697 IKRDIVFNMLDKWL 710


>gi|320159220|ref|YP_004191598.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
 gi|319934532|gb|ADV89395.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
          Length = 1320

 Score =  269 bits (687), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 194/611 (31%), Positives = 297/611 (48%), Gaps = 103/611 (16%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + E K  A+A   AK  FLA +SHEIRTPMN +LGM  + ++TELD +Q+ Y+     S 
Sbjct: 585  LREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTELDPSQRKYLTRINESA 644

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            K L+ +IN++LD +K+E+GKL +E++ F+L  + +++ ++ S K+Q+KG+E  + I  RV
Sbjct: 645  KNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFKAQEKGIEFLLDIDPRV 704

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  L+GDP R  Q++ NL GN++KFTEKG I V+V                         
Sbjct: 705  PVGLVGDPLRLGQVLVNLCGNAVKFTEKGEILVSVM------------------------ 740

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                   P +S S+D + L  SV+DTG GI  E  + +F  F Q
Sbjct: 741  -----------------------P-ESQSSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQ 776

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               SI+R  GGTG+GLSISK LV  M G++   S   +GSTFTFT   G   +       
Sbjct: 777  ADTSITREFGGTGLGLSISKQLVELMGGQLSVSSAVGMGSTFTFTIHCGLQEA------- 829

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
             +M +    +S    G +AL+VD       +    +  +    + VS+  + L ++   +
Sbjct: 830  -KMRDIAKPISG-LAGKRALIVDDNDSARNILMTLLSAMQFDAKAVSNGFEALDELRQST 887

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS--ISSSRANTSTDGVS 663
               +M+ V+   W          +N L  L    Q +L     +  +++     S D  S
Sbjct: 888  --FDMVFVD---WNMPG------MNGLELLQTAHQERLLAETKNFLVTAYGREISMDENS 936

Query: 664  ---IPSVIMKPLRSSMLAASLQRAMG---VGNKGNIRNWELPSMSLRHLLLGRKILIVDD 717
               + S+I+KP+  S L  ++  + G   V        +E P         G+ +L+V+D
Sbjct: 937  SKLVDSLIVKPVNPSNLLDAIMDSYGIEHVTRSSTTATFEKPVFD------GQTLLLVED 990

Query: 718  NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
            N VN +VA   L      ++  + GK A E L   H  D   MD+QMP MDG  ATK IR
Sbjct: 991  NEVNQEVAIGLLNGTNLNIITADNGKLAIEAL-ENHPIDLVLMDMQMPVMDGITATKAIR 1049

Query: 778  EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
            E          R E +           +PI+AMTA+ +Q+  E C  +GM+ +V+KP   
Sbjct: 1050 E----------RAEWAT----------LPIVAMTANAMQSDVERCHEAGMNDHVAKPINV 1089

Query: 838  EQLYREVSRFF 848
              LY+ +S++ 
Sbjct: 1090 HNLYQVLSQYL 1100


>gi|386826933|ref|ZP_10114040.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
 gi|386427817|gb|EIJ41645.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
          Length = 1636

 Score =  269 bits (687), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 189/590 (32%), Positives = 297/590 (50%), Gaps = 94/590 (15%)

Query: 260 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
           KS+FLA +SHEIRTPMN V+GM  +L +T L+  Q+D+V T + S   L+ LIN++LD +
Sbjct: 282 KSEFLANMSHEIRTPMNAVIGMAGLLRETHLNQQQRDFVETIRTSSDTLLCLINDILDFS 341

Query: 320 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS---DRVPETLIGDPGRF 376
           K+++GKLELE   F+LR  ++  L L + ++ +K +EL  +      RVPE L GD  R 
Sbjct: 342 KIDAGKLELEENLFDLRECVESALDLVAPRAAEKNLELTAFFDHEMQRVPEYLCGDVTRL 401

Query: 377 RQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 436
           RQI+ NL+ N++KFTEKG + V +                       S  P+ +      
Sbjct: 402 RQILVNLLTNAVKFTEKGEVVVMI-----------------------SAQPLLEEKQ--- 435

Query: 437 GFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 496
                                I L  +V+DTG GIP +  +R+F  F QV  S++R +GG
Sbjct: 436 ---------------------IELYFAVKDTGIGIPPDRINRLFQSFSQVDASMTRKYGG 474

Query: 497 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS 556
           +G+GL+ISK+L   MKG I   S    GSTF FT     G + + ++ S         VS
Sbjct: 475 SGLGLAISKHLCELMKGRIWIDSELGKGSTFHFTITAQVGENPNIQNVS--------DVS 526

Query: 557 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQE 616
            E +G + L++D      ++ +   Q+ G+ VE      + L+++A  +K  ++++++ +
Sbjct: 527 VELEGKRLLIIDDNATNLRILKLQAQQWGMVVEEAFSGKEALARLAQPTK-FDLLILDMQ 585

Query: 617 VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 676
           + E D          +RKL    ++   ++  S+    A+ S    S  + + KP+++  
Sbjct: 586 MPEMD---GITLAYEIRKL-YSIETLPIIMLTSLGRHHADISPHLFS--AYLTKPVKAKH 639

Query: 677 LAASLQ-----RAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKR 731
           L   ++     +A+      +I   +  +M+ +H L   +IL+ +DN  N KVA   L R
Sbjct: 640 LLTVVKSIFNPKAVSADEVNHITVTD-QNMAKKHPL---RILLAEDNLTNQKVAIHLLHR 695

Query: 732 YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 791
            G +      GK+A E  +    +D   MD+QMPEMDGFEAT+ IRE    F        
Sbjct: 696 LGYSADIASNGKEAVE-AVARQMYDVILMDVQMPEMDGFEATQQIRERWQYFTT------ 748

Query: 792 VSIEAYENVSNFHVP-ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                       H P I+AMTA  +Q   E+CL +GMD Y++KP   E+L
Sbjct: 749 ------------HNPYIIAMTAHALQGYREKCLAAGMDDYITKPVRREEL 786



 Score = 47.8 bits (112), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 23/131 (17%)

Query: 711  KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF-DACFMDIQMPEMDG 769
            KIL+VDD   +  + +A L+  G  V+    G++A EL++  +Q  +    D+ MPEMDG
Sbjct: 1282 KILVVDDQPYDSLLVSAYLREEGYNVLVASTGQEALELVI--NQVPNLVLSDVMMPEMDG 1339

Query: 770  FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
            FE  + I+           R E          +   P++ +TA   +    + +++G D 
Sbjct: 1340 FEVCRQIKA----------RHE----------SILTPVVLLTALEGRTERIKGIQAGADE 1379

Query: 830  YVSKPFEAEQL 840
            ++SKP   E+L
Sbjct: 1380 FISKPINREEL 1390


>gi|309790815|ref|ZP_07685359.1| PAS fold family protein [Oscillochloris trichoides DG-6]
 gi|308227102|gb|EFO80786.1| PAS fold family protein [Oscillochloris trichoides DG6]
          Length = 1149

 Score =  269 bits (687), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 192/601 (31%), Positives = 297/601 (49%), Gaps = 95/601 (15%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            ++E K+ AE A  A+S+FLA +SHEIRTPMNGV+GM  +L+DT L+  Q++Y  T ++SG
Sbjct: 500  LIEAKEAAEHATRARSEFLANMSHEIRTPMNGVIGMTGLLLDTPLNERQREYAETIRSSG 559

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            ++L+++IN++LD +K+ESG++ELE   F ++  ++  L L +  +  KG++LA  I+  V
Sbjct: 560  ESLLTIINDILDLSKIESGRMELEQQPFEIQECVESALDLVAPTAFAKGLDLAYLIAADV 619

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  LI D  R RQI+ NL+GN++KFTE G + + V                       S 
Sbjct: 620  PMMLISDVTRLRQILVNLLGNAVKFTEHGEVTLQV-----------------------SR 656

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
            YP  D                        AD ++L++ V DTG GIP +   R+F  F Q
Sbjct: 657  YPDFDL----------------------EADQVHLVIEVRDTGIGIPPDKLDRLFRAFSQ 694

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
            V  S +RT+GGTG+GL I K L   + G I   S P  GSTF    + G GS        
Sbjct: 695  VDASTTRTYGGTGLGLVICKRLSEMLGGGISVESAPGQGSTFRVEMLAGVGSEEDM---- 750

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
                    ++  +  G + L+V+P P R ++  +     G+ V  ++   + L  I +G 
Sbjct: 751  -------YALDMDLAGRQILIVEPNPTRREMLSHAASGWGMSVYPLAVAQEALDLIVAGG 803

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
               ++ L++  + +   +  TL    LR+   G    + L    IS       T   +I 
Sbjct: 804  S-FDLALLDATLVDAYGTPLTL---ALRRFPAGVDLPVVL----ISDLNTKQQTLPPNIA 855

Query: 666  SVIMKPLRSSMLAASLQRAMGV------GNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 719
              + KP++  +L  +L  A+G         +  ++   +P    RH L   +IL+ +DN 
Sbjct: 856  WHLRKPIKRRLLYRALLAAVGAMEGMEYAQEPQVQPEPVPDE--RHSL---RILLAEDNA 910

Query: 720  VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
            VN +VA   L+R G     V  G +A E +   H +D   MD+QMPE+DG EAT+ I   
Sbjct: 911  VNQRVALRTLERLGYRADVVGNGLEAIEAIARQH-YDVVLMDVQMPELDGLEATRQI--- 966

Query: 780  EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
                   + R   +             I+AMTA+ ++   E CL +GMD Y+SKP   E+
Sbjct: 967  -------VARWPATARPR---------IIAMTANAMRGDRERCLAAGMDDYISKPVRLEE 1010

Query: 840  L 840
            L
Sbjct: 1011 L 1011


>gi|53804659|ref|YP_113669.1| sensory box histidine kinase/response regulator [Methylococcus
            capsulatus str. Bath]
 gi|53758420|gb|AAU92711.1| sensory box histidine kinase/response regulator [Methylococcus
            capsulatus str. Bath]
          Length = 1177

 Score =  269 bits (687), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 184/601 (30%), Positives = 289/601 (48%), Gaps = 95/601 (15%)

Query: 260  KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
            KS FLA +SHEIRTPMNGVLGML++L DT++   Q D V TA  S ++L+ +IN +LD +
Sbjct: 521  KSAFLANMSHEIRTPMNGVLGMLELLKDTDMSREQWDLVETASNSAESLLEIINSILDFS 580

Query: 320  KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
            K+E+GK+E+E   FNL  ++++V +L +G++ DKG+EL  ++   +P   IGDP R RQI
Sbjct: 581  KLEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQI 640

Query: 380  ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
            +TNL+GNS+KFTE+G + V V           ++ E  + +  LS               
Sbjct: 641  LTNLLGNSVKFTERGEVSVKV-----------MQGEAGAKRTDLS--------------- 674

Query: 440  TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
                                    + DTG GI  + Q+R+F PF Q   S SR  GGTG+
Sbjct: 675  ----------------------FEIRDTGIGIAPDVQARLFQPFTQADGSTSRRFGGTGL 712

Query: 500  GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 559
            GLSI + LV  M G IG  S P  GS F FT               + +         +F
Sbjct: 713  GLSICRNLVELMGGTIGLESAPGRGSRFWFTLPL------------EPLPGASAPALPDF 760

Query: 560  QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---SKIINMILVEQE 616
               + LVVD       +  +++   G++V+        L+++ +    S+  +++L++  
Sbjct: 761  SHRRVLVVDDNATNRVILSHYLTHWGLEVDEAERGDTALNRLRTALHESRPYDIVLLDLH 820

Query: 617  VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 676
            +   D       +N   + G     +L L +  ++          + I   ++KP+R S+
Sbjct: 821  MPYMDGHELARAMNA--EPGLKDTPRLLLSSGGLT---GEAELRALGIARSLLKPVRQSL 875

Query: 677  LAASLQRAMGVGNKGNIRNWELPSMSLRHLLL---GRKILIVDDNNVNLKVAAAGLKRYG 733
            L  ++   +    K  ++    P+     +L    GR++L+V+DN VN KV  A L ++G
Sbjct: 876  LFNAIAEVLAA--KATVQR--RPAAKTETVLPAYEGRRVLVVEDNRVNQKVIVAMLGKFG 931

Query: 734  AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVS 793
                  + G+ A ELL     +D   MD QMP + G+EAT  +R  E +   R       
Sbjct: 932  IVPDVADNGQAALELL-ARSSYDLVLMDCQMPVLGGYEATGELRAREMSAGGR------- 983

Query: 794  IEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF--PPI 851
                        P++A+TA       E+CL +GMD Y+SKP   ++L   + R+   P  
Sbjct: 984  ----------RTPVVALTAHAATGEREKCLAAGMDDYLSKPISRDRLAEALERWLGHPAA 1033

Query: 852  P 852
            P
Sbjct: 1034 P 1034


>gi|32401164|gb|AAP80772.1|AF525283_4 MmoS [Methylococcus capsulatus str. Bath]
          Length = 1177

 Score =  269 bits (687), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 184/601 (30%), Positives = 289/601 (48%), Gaps = 95/601 (15%)

Query: 260  KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
            KS FLA +SHEIRTPMNGVLGML++L DT++   Q D V TA  S ++L+ +IN +LD +
Sbjct: 521  KSAFLANMSHEIRTPMNGVLGMLELLKDTDMSREQWDLVETASNSAESLLEIINSILDFS 580

Query: 320  KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
            K+E+GK+E+E   FNL  ++++V +L +G++ DKG+EL  ++   +P   IGDP R RQI
Sbjct: 581  KLEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQI 640

Query: 380  ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
            +TNL+GNS+KFTE+G + V V           ++ E  + +  LS               
Sbjct: 641  LTNLLGNSVKFTERGEVSVKV-----------MQGEAGAKRTDLS--------------- 674

Query: 440  TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
                                    + DTG GI  + Q+R+F PF Q   S SR  GGTG+
Sbjct: 675  ----------------------FEIRDTGIGIAPDVQARLFQPFTQADGSTSRRFGGTGL 712

Query: 500  GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 559
            GLSI + LV  M G IG  S P  GS F FT               + +         +F
Sbjct: 713  GLSICRNLVELMGGTIGLESAPGRGSRFWFTLPL------------EPLPGASAPALPDF 760

Query: 560  QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---SKIINMILVEQE 616
               + LVVD       +  +++   G++V+        L+++ +    S+  +++L++  
Sbjct: 761  SHRRVLVVDDNATNRVILSHYLTHWGLEVDEAERGDTALNRLRTALHESRPYDIVLLDLH 820

Query: 617  VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 676
            +   D       +N   + G     +L L +  ++          + I   ++KP+R S+
Sbjct: 821  MPYMDGHELARAMNA--EPGLKDTPRLLLSSGGLT---GEAELRALGIARSLLKPVRQSL 875

Query: 677  LAASLQRAMGVGNKGNIRNWELPSMSLRHLLL---GRKILIVDDNNVNLKVAAAGLKRYG 733
            L  ++   +    K  ++    P+     +L    GR++L+V+DN VN KV  A L ++G
Sbjct: 876  LFNAIAEVLAA--KATVQR--RPAAKTETVLPAYEGRRVLVVEDNRVNQKVIVAMLGKFG 931

Query: 734  AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVS 793
                  + G+ A ELL     +D   MD QMP + G+EAT  +R  E +   R       
Sbjct: 932  IVPDVADNGQAALELL-ARSSYDLVLMDCQMPVLGGYEATGELRAREMSAGGR------- 983

Query: 794  IEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF--PPI 851
                        P++A+TA       E+CL +GMD Y+SKP   ++L   + R+   P  
Sbjct: 984  ----------RTPVVALTAHAATGEREKCLAAGMDDYLSKPISRDRLAEALERWLGHPAA 1033

Query: 852  P 852
            P
Sbjct: 1034 P 1034


>gi|90023292|ref|YP_529119.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89952892|gb|ABD82907.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 765

 Score =  269 bits (687), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 193/597 (32%), Positives = 285/597 (47%), Gaps = 93/597 (15%)

Query: 249 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 308
           L ++AEAA+ AKSQF+AT+SHEIRTPMNGV+GM++ML DT LD +Q+ Y+   + SG +L
Sbjct: 242 LVQEAEAANRAKSQFIATMSHEIRTPMNGVIGMVEMLRDTTLDDSQRHYLGIIERSGDSL 301

Query: 309 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 368
           +++IN++LD +K+E+GK+ LE + F+L  +L+D + +FS  +  + +EL   IS   P+ 
Sbjct: 302 MNIINDILDYSKIEAGKMSLEHMQFDLEELLEDCVQMFSASTDKRNIELICSISPNTPKQ 361

Query: 369 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 428
           L+GDP R +Q++ NL+GN+ KFT +GHI+V    V                         
Sbjct: 362 LMGDPTRLKQVLVNLIGNAFKFTSEGHIYVEARQV------------------------- 396

Query: 429 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 488
                                  +S ADL  +  SVED+G GI    Q ++F  F Q   
Sbjct: 397 ----------------------NASDADLPMIHFSVEDSGIGIESNQQEKLFDAFCQADG 434

Query: 489 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 548
           S +R  GGTG+GL+I K L   M GEIG  S    GSTF F+AVF         H  + +
Sbjct: 435 STTRKFGGTGLGLTICKQLAEMMGGEIGVYSREKAGSTFWFSAVFT--------HVEKAI 486

Query: 549 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII 608
           N QP        G K LVV+   I  KV   H     I   +V    + L ++ SG    
Sbjct: 487 NEQP---PQSLAGKKLLVVNQSKIVEKVIASHAADWNIACRIVHSGEKAL-EVISGQHHY 542

Query: 609 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLA----NSISSSRANTSTDGVSI 664
           + I++ Q++ +          + +R L     + +FL+     + +   R +T T  +  
Sbjct: 543 DFIILSQDLQDMP---GLDVADKVRTLAAYSSTPIFLVTKVRKSQLPEDRLHTITALLPY 599

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
           P  I K    ++L       +    K N +   +    L        +L+ +DN VN  V
Sbjct: 600 PLSIHKI--ENLLQTKPTHTVVEEQKTNTQATTVSEGPLH-------VLVAEDNPVNRMV 650

Query: 725 AAAGLKRYGAAVVCVERGKKATELLM-PPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
               L ++  A    E G +A   +   P  +D   MD +MPEMDGFEAT+ IR  E N 
Sbjct: 651 IEGLLAKFDIAPKFAEDGLQALNAVTESPTPYDLIIMDCEMPEMDGFEATRSIRTWESNN 710

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
           N                      I+A+TA V     +    SGM+ Y+SKP   E+L
Sbjct: 711 NQPA-----------------TTIIALTAHVEAEHRQRVFDSGMNYYLSKPVTMEKL 750


>gi|430747804|ref|YP_007206933.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
 gi|430019524|gb|AGA31238.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
          Length = 912

 Score =  269 bits (687), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 189/609 (31%), Positives = 289/609 (47%), Gaps = 91/609 (14%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K+ AEAA+ AK  FLA VSHEIRTPMN +LGM ++ +DT L   Q+ Y+ T + S  AL+
Sbjct: 246 KETAEAANRAKDAFLANVSHEIRTPMNAILGMTELTLDTPLTDEQRKYLATVKTSADALL 305

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN++LD +K+E+GKLEL+   F+LR +L + L   + ++  KG+EL   I   VP+ L
Sbjct: 306 SVINDLLDFSKIEAGKLELDFADFSLRRVLGETLRALAFRAHRKGLELVCQIQPDVPDAL 365

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGD GR RQ++ NL+GN+IKFTE+G I V V              E   +  T    P  
Sbjct: 366 IGDAGRLRQVLLNLIGNAIKFTEQGEIVVRV--------------ETVPAPGTKDSIPP- 410

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                         L+ S+ DTG GIPL+ Q +IF  F Q   S
Sbjct: 411 -----------------------------GLLFSIVDTGIGIPLDKQQKIFQAFEQQDSS 441

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R +GGTG+GLSI+  LV  M G+I   S+P  GSTF FT  F       + H      
Sbjct: 442 TTRKYGGTGLGLSIASQLVALMGGQITVESVPGRGSTFCFTVHFAE-----HPHPIDHPF 496

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI-- 607
            +P    ++  G++ L+VD       +    ++        V D L+ L  +  G  +  
Sbjct: 497 ERP---LTDLHGLRILIVDDNATNRHILEEWLRSWKTDPTSVGDGLKALDALWRGVALGR 553

Query: 608 -INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
             +++L++  +    T    L  + L+         + L +  +    A   T G++  +
Sbjct: 554 PFSLVLLDARM--PGTDGLALAASILQSPELSASRIILLTSEDLHGDIARYRTLGIA--A 609

Query: 667 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL---------PSMSLRHLLLGRKILIVDD 717
             MKP++   L   + R +                      P+ S   L    ++L+ +D
Sbjct: 610 YTMKPVQQEELLEIIHRVLSRPTPAEPAAPTATTTSPVPVDPAESGSRL----RVLVAED 665

Query: 718 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
           N +N ++    L+R G  VV V  G +A   +   H FD   +D+ MPE DGF+  + +R
Sbjct: 666 NPLNQELVEHLLRRRGHDVVVVGDGLEALNAI-DRHDFDLSLLDVHMPEFDGFQVIEAVR 724

Query: 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
           + E +       GE            H+P++AMTA  ++   E CL +GMD Y++KP  A
Sbjct: 725 QREQS------TGE------------HLPVIAMTALAMKGDRERCLEAGMDDYLAKPIRA 766

Query: 838 EQLYREVSR 846
             L+  + R
Sbjct: 767 SALFAVIDR 775


>gi|410629876|ref|ZP_11340571.1| two-component system, unclassified family, sensor histidine kinase
            and response regulator [Glaciecola arctica BSs20135]
 gi|410150499|dbj|GAC17438.1| two-component system, unclassified family, sensor histidine kinase
            and response regulator [Glaciecola arctica BSs20135]
          Length = 1065

 Score =  268 bits (686), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 192/626 (30%), Positives = 307/626 (49%), Gaps = 95/626 (15%)

Query: 233  VNRIAKVEEDYHGMMELKK---KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE 289
            V  I  + E +     LKK    AE A+ AKS+FLA +SHEIRTPMNGV+GM  +L+DT 
Sbjct: 520  VGIIRDITERHQAKTALKKAKDSAEQANQAKSEFLANMSHEIRTPMNGVIGMTSLLLDTP 579

Query: 290  LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGK 349
            L+  Q ++ +  ++S K+L+S+IN++LD +KVE+G LE+E++ F++  ++++     + +
Sbjct: 580  LNPEQHNFAKIVKSSAKSLLSIINDILDFSKVEAGMLEMESIDFDMDLLMNEFGRSIAVR 639

Query: 350  SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 409
            + +KG+EL    +    +    DPGR RQI+ NL+GN+IKFTE+G + V  Y V++  D+
Sbjct: 640  AHEKGLELICPANPVQHKCYSADPGRIRQILNNLVGNAIKFTEQGEVAV-YYKVQQQTDA 698

Query: 410  IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469
                                                              +++ V DTG 
Sbjct: 699  -----------------------------------------------RTKVLIEVTDTGI 711

Query: 470  GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 529
            G+  E Q+ +F  F Q   S +R HGGTG+GL+ISK LV  M GEIG  S    GSTF F
Sbjct: 712  GLSAEQQAGLFERFSQADGSTTRKHGGTGLGLAISKQLVELMGGEIGIKSTHGKGSTFWF 771

Query: 530  TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ-- 587
            T    N   T+           P    ++ +G K LVVD       +  + +    ++  
Sbjct: 772  TLDLENSEHTA-----------PTFSVADLRGQKILVVDDNLTNRTLLGHLLTNWQVEHT 820

Query: 588  -VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 646
             VE     L+CL+Q  +  +  ++ +++ ++ + D +     + N   +     + L +L
Sbjct: 821  LVESAKQALECLTQAVADKQAYSIAIIDMQMPDMDGAQLGTAIKNDTTIT---NTHLVML 877

Query: 647  ANSISSSRANTST-DGVSIPSVIMKPLRSSMLAASL-QRAMGVGNKGNIRNWELPSMSLR 704
             +     R +T     V   + + KP+  ++L  +L Q A    N   I    L   S R
Sbjct: 878  TS--QGQRGDTQKLKAVGFDAYLNKPVDQAILYNTLIQVAKITTNDSPI----LTEYSSR 931

Query: 705  HL-LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 763
            H      +IL+V+DN +N  VA + L++YG        G++A + L     +D  FMD Q
Sbjct: 932  HTPQFKARILVVEDNVINQMVAQSMLEQYGIQSDVAANGEEALKAL-ENFPYDLVFMDCQ 990

Query: 764  MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 823
            MP MDGFEAT+ IR  E    N+                  +PI+AMTA+ +Q   E+C+
Sbjct: 991  MPVMDGFEATRSIRSPESKVRNKA-----------------IPIIAMTANTMQGDREKCI 1033

Query: 824  RSGMDGYVSKPFEAEQLYREVSRFFP 849
             +GM+ ++SKP E  +  + +  + P
Sbjct: 1034 AAGMNDFISKPVETLKFQQSLELWLP 1059


>gi|359459602|ref|ZP_09248165.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris sp. CCMEE 5410]
          Length = 1582

 Score =  268 bits (685), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 200/654 (30%), Positives = 323/654 (49%), Gaps = 99/654 (15%)

Query: 211  AISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHE 270
            A++  +GI   A   GH+ +    +   + ++   + + +K A+AA+VAKS+FLAT+SHE
Sbjct: 1002 AVAGQVGI---ALAHGHLLEQEQQQRQTLTQNNTALKQARKDADAANVAKSEFLATMSHE 1058

Query: 271  IRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEA 330
            IRTPMN V+GM  +L++T LD  Q+D+V T ++SG AL++LIN++LD +K+E+GKLE E 
Sbjct: 1059 IRTPMNAVIGMTGLLLNTTLDNQQRDFVETIRSSGDALLTLINDILDFSKIEAGKLEFEE 1118

Query: 331  VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKF 390
              F+LRA +++ L L + ++ DK +ELA       P  ++GD  R RQI+ NL+ N +KF
Sbjct: 1119 QPFSLRACIEESLRLVAPRAIDKQLELAYLFDPSTPNHIVGDVTRLRQILVNLLTNGVKF 1178

Query: 391  TEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPF 450
            TE+G +   V  V+++ D+   + E                               T+P 
Sbjct: 1179 TEQGEV---VIYVQDITDTDIAQPE-------------------------------TTPQ 1204

Query: 451  KSSSADLIN----LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKY 506
            + +  D+ N    +   V D+G GIP +   R+F  F QV  S ++ +GGTG+GL+I + 
Sbjct: 1205 RKNFTDIQNQRRLVQFEVRDSGIGIPADRMDRLFKSFSQVDASTTKKYGGTGLGLAICRS 1264

Query: 507  LVGRMKGEIGFVSIPNIGSTFTFT---AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMK 563
            L   M G I   S   +GS+F FT    V   G +T ++  SQQ+            G +
Sbjct: 1265 LSQMMGGRIWVESKAGVGSSFFFTIAVPVAPEGENTLDQ--SQQL----------LDGKQ 1312

Query: 564  ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTS 623
             LVVD  P   ++     Q  G+ ++ VS   + L+ + S SK  ++ +++ ++ E D  
Sbjct: 1313 LLVVDDNPTNRRILTLQAQTWGMGIQTVSGGAEALALLESDSK-FDLAILDMQMPEMD-- 1369

Query: 624  VSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL-- 681
                   ++R+L       L +L+ S+           +   +++ KP++ S L  +L  
Sbjct: 1370 -GVELARHIRQLDQRKHLPLVMLS-SLGQDEIIKHKQEIQFSAILNKPIQQSYLYDALAE 1427

Query: 682  ----QRAM---GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGA 734
                QR      V +  N      PS+         +IL+ +D  VN KVA   LK+ G 
Sbjct: 1428 IFEGQRVQVKPTVPSPANTEEQGDPSL---------QILLAEDIVVNQKVALLILKQLGY 1478

Query: 735  AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSI 794
                   G++  E L     +D   MD+QMPEMDG  A + I+E     +          
Sbjct: 1479 RADVANNGEEVLEALH-RQSYDVVLMDVQMPEMDGLTAARHIKEQWQEED---------- 1527

Query: 795  EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            + Y         I+A+TA+ +Q   E C+ +GM  YVSKP   ++L     R+F
Sbjct: 1528 QPY---------IIALTANAMQGDREMCMAAGMHDYVSKPIRVDELKSAFERYF 1572


>gi|218439787|ref|YP_002378116.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218172515|gb|ACK71248.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 936

 Score =  268 bits (685), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 190/606 (31%), Positives = 296/606 (48%), Gaps = 83/606 (13%)

Query: 258 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLD 317
           +AKSQFLA V HE+RTP+N V GM  +L+DT+L   Q++++   + SG+ L+++IN +LD
Sbjct: 271 LAKSQFLAMVGHELRTPLNAVTGMTGLLLDTKLTNQQREFINIIRNSGETLLTMINNILD 330

Query: 318 QAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFR 377
            AK+E+ KLELE   F L   +++ L LF  ++ ++ +ELA  I    P  +IGD  R +
Sbjct: 331 FAKIEANKLELEETPFELGQSIEEALHLFVPQASERKLELAYLIEPHTPNAIIGDVTRLK 390

Query: 378 QIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKG 437
           QI+ NL+ N++KFTE G + V V                  +   ++ +PV         
Sbjct: 391 QILVNLLSNAVKFTESGEVVVYV------------------NATPVTQHPV--------- 423

Query: 438 FKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 497
                     +P K  S+ L  +  +V+D+G GIP E   R+F  F QV  S SR +GGT
Sbjct: 424 ----------TPQKDKSSPLYEIRFAVKDSGIGIPREKMDRLFKSFSQVDASTSRKYGGT 473

Query: 498 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS 557
           G+GL+ISK L   M G++ F S+   GSTF FT +     S+S       + N P S   
Sbjct: 474 GLGLAISKRLTEMMGGKMWFHSVEGKGSTFYFTVIAQAAPSSS-------LANSP-SAEE 525

Query: 558 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEV 617
              G + L+VD      K+  +     G+    V    + L  +  G    ++++++  +
Sbjct: 526 MLGGKRMLIVDDIITNQKILTHQANSWGMLTCSVQSAPKALEWLKQGWA-FDVVILDMNM 584

Query: 618 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 677
            + D          +R L    +  L LL+ S+         + +   +++ KP++ + L
Sbjct: 585 PKID---GLTLAQEIRNLPHCKRLPLVLLS-SLGKPEMTEKVEKIEFAAILTKPIQQAQL 640

Query: 678 AASLQRAMG----VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYG 733
              L R +     + N G + + E P ++     L  +IL+ +D NVN +V    L++ G
Sbjct: 641 YDVLVRVLREKPIIVNHG-LTDSEHPRLADT---LPLRILVAEDINVNQEVIRLQLEKLG 696

Query: 734 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVS 793
                V  G +  E L   H +D   MD++MPEMDG  AT  IR+               
Sbjct: 697 YLPDIVSNGVEVLEALR-RHPYDVILMDVRMPEMDGMSATHQIRK--------------- 740

Query: 794 IEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF----- 848
               E + N    I+AMTAD +Q   E+CL SGMD Y+SKP   E+L+R +S+       
Sbjct: 741 ----EWMPNVRPRIIAMTADAMQGDREKCLESGMDDYISKPIRLEELHRAISKCSRILDK 796

Query: 849 PPIPDR 854
           PP  DR
Sbjct: 797 PPAIDR 802


>gi|71908962|ref|YP_286549.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
 gi|71848583|gb|AAZ48079.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
          Length = 923

 Score =  268 bits (685), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 197/622 (31%), Positives = 315/622 (50%), Gaps = 104/622 (16%)

Query: 239 VEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 298
           VE+    +   K+ AEA   AKS+FLAT+SHEIRTPMNGVLGM ++L+ TEL+ TQ+ +V
Sbjct: 249 VEQRTRELRLAKEAAEAGSQAKSEFLATMSHEIRTPMNGVLGMTELLLGTELEPTQRQFV 308

Query: 299 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 358
              + SGK L+ +IN++LD +K+E+GKLEL+ V F+LR +L++ L LFS  ++ KG+EL 
Sbjct: 309 EAVERSGKHLLHIINDILDFSKIEAGKLELDVVDFDLRNLLEESLELFSQPARRKGLEL- 367

Query: 359 VYISDRVP-ETLI--GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415
             ++D  P E LI  GDP R RQI+TNL+GN++KFTE G I + + +VE   + +++   
Sbjct: 368 --VADLPPDEKLIVRGDPLRLRQIVTNLLGNAVKFTETGEILLRLLVVEPRDNGLKLALV 425

Query: 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 475
           +S   +T  G P+                                             +A
Sbjct: 426 VS---DTGIGIPL---------------------------------------------DA 437

Query: 476 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535
           Q +IF  F+Q   S +R +GGTG+GL+I ++LV  M G I   S P  G+ FT       
Sbjct: 438 QEKIFEHFLQADGSTTRKYGGTGLGLAICRHLVDMMGGRIHVESTPGKGAAFTVELDLPL 497

Query: 536 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 595
           G         Q +   P +      G + LVVD    + +V    ++  G   E  +  L
Sbjct: 498 GKLPVASPEKQAL---PAT------GARVLVVDDSSTQREVLLALLRGRGFIAEGAASSL 548

Query: 596 QCLSQIASG---SKIINMILVEQEVWEKDTSVSTL----FVNNLRKLGCGFQSKLFLLAN 648
             LS + +     +   ++L+       DT +  L     V  LR       +++ +++ 
Sbjct: 549 AGLSVLKAAVEEGEPYALLLI-------DTQMPDLPGCDVVRALRADQNLAPTRVIIISA 601

Query: 649 SISS-SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL 707
            + + S+A  ++  + I + + KP+R + L  +++  +   +  +    + P+  LR   
Sbjct: 602 QVDALSKAERAS--LQIAACLPKPVRQAELLRAIETTLQRRSVSDTAVIDSPARKLR--- 656

Query: 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
            GR +L+ +DN  NL VA A L+R G  V+    G++A ++L      D   MD QMP +
Sbjct: 657 -GR-VLVAEDNESNLVVARAQLERMGLEVIAASDGQQALDILA-EETVDLVLMDCQMPVL 713

Query: 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
           DGF AT  +RE                   E VS  H+P++A+TA+ ++   E C  +GM
Sbjct: 714 DGFAATMALRE------------------REAVSGRHLPVIALTANAMKGDRERCKDAGM 755

Query: 828 DGYVSKPFEAEQLYREVSRFFP 849
           D Y++KP+  E+L   ++R+ P
Sbjct: 756 DEYLAKPYSGEELLTLLARWLP 777


>gi|218781753|ref|YP_002433071.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763137|gb|ACL05603.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 949

 Score =  268 bits (685), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 200/630 (31%), Positives = 301/630 (47%), Gaps = 111/630 (17%)

Query: 249 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 308
           L  +A+ A++AKS+FLA +SHEIRTPMNGV+GM+ +L++TEL   Q++Y  T + S  +L
Sbjct: 288 LAVQADLANMAKSEFLANMSHEIRTPMNGVVGMISLLLETELTREQKEYAETVRNSAHSL 347

Query: 309 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 368
           + +IN++LD +K+E+GKL+LEA+ F+LR  L++   + + ++Q+KG+E    I   VP  
Sbjct: 348 LEIINDILDFSKIEAGKLDLEAIDFDLRNTLEEASDIVALRAQEKGLEFVCIIDPDVPFR 407

Query: 369 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 428
           L GDP R RQI+ NL  N++KFT +G I + V L+++                       
Sbjct: 408 LKGDPVRLRQIVLNLANNAVKFTAQGSITIRVELLKQ----------------------- 444

Query: 429 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 488
                                    + DL+ L  SV DTG G+    Q  +F  F Q   
Sbjct: 445 -------------------------APDLLALKFSVTDTGIGVAPSRQQSLFDAFTQAEA 479

Query: 489 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNE------ 542
           S +R +GGTG+GL+ISK L   MKG IG  S    GSTF FTA FG  +    E      
Sbjct: 480 STTRNYGGTGLGLAISKKLAQMMKGRIGLESEEGKGSTFWFTAQFGKQAQAKEEISPYLA 539

Query: 543 -HNSQQMNNQPNSVSSEFQGMKALVV-DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQ 600
            HN + +    N+ ++  Q +  L     RP  A+     +++L         +L   SQ
Sbjct: 540 VHNKRVLVVAENA-ATRLQLVNMLKSWSCRPEEAQGGGEALEKL---------RLAAASQ 589

Query: 601 IASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 660
                 I +  L       KD    TL    L K         +L+   +          
Sbjct: 590 DPFALAIADNKL-------KDMDGETL--GRLAKKDIKLADAHWLIMTFMGKRWDEFRMK 640

Query: 661 GVSIPSVIMKPLRSSMLAASLQRAMGV-GNKGNIRN---WELPSMSLRHLLLGR---KIL 713
                  + KP++ S L  SL  A+   G    I     +E+PS++     L R    IL
Sbjct: 641 SAGFEGCLTKPVKQSALYNSLVSALNAEGGSHKISKPPRFEMPSLT----TLQRPDVSIL 696

Query: 714 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
           + +DN VN KVA + LK+ G     V  G++A + L    ++   FMD QMP+MDG+EAT
Sbjct: 697 VAEDNPVNQKVALSILKKLGLRAEAVANGREAVKALC-EKKYTMVFMDCQMPDMDGYEAT 755

Query: 774 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
           + IR          RR          V +   P++AMTA  ++   ++C+ +GMD Y+SK
Sbjct: 756 RRIRS---------RRS--------CVLDPKTPVIAMTAHAMEGDRKKCIEAGMDDYLSK 798

Query: 834 PFEAEQLYREVSRFFPP-------IPDRSP 856
           P E   L   + ++ P        IP+++P
Sbjct: 799 PVEPGALIEMIHKWLPEKTEAEKIIPEKTP 828


>gi|87308528|ref|ZP_01090668.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
 gi|87288620|gb|EAQ80514.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
          Length = 954

 Score =  268 bits (685), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 179/585 (30%), Positives = 284/585 (48%), Gaps = 87/585 (14%)

Query: 261 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 320
           S+FLA VSHEIRTPMN ++GM  + +  +L    ++YV TA +S   L+SL+N++LD +K
Sbjct: 312 SEFLANVSHEIRTPMNAIIGMTKLTLAEDLPEAVREYVETANSSAHTLLSLLNDILDFSK 371

Query: 321 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 380
           +E+GK  ++   FNLR  +D  +   S ++  KG+E+A+    R+PE LIGD  R RQII
Sbjct: 372 IEAGKFTIDRSEFNLRQTIDATMRALSERAFSKGLEVAIDYDPRIPEELIGDAIRLRQII 431

Query: 381 TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 440
           TNL+ N++KFTE+G + ++V L+                                   + 
Sbjct: 432 TNLVSNAVKFTERGEVLLSVKLL-----------------------------------RR 456

Query: 441 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 500
           F ++             + +  ++ DTG GI    Q RIF PF QV  S +R  GG+G+G
Sbjct: 457 FPRE-------------VRIRFTISDTGVGITPADQKRIFEPFTQVDSSSTRNFGGSGLG 503

Query: 501 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 560
           L+I   L+  M G +   S P +GS F+F  +F    +  +   S  +         EF 
Sbjct: 504 LTICHELLELMGGRLELNSEPGVGSRFSFALLFPRTRTAESRLRSAIL-------PPEFA 556

Query: 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI---INMILVEQEV 617
           GM+ LVVD      K+ R  ++   +     SD  + +   +   K+    +++L++  +
Sbjct: 557 GMQVLVVDDNETNRKILRELLRSWELDAFTTSDAEEAIRLFSEKQKVGDPFDLVLIDALM 616

Query: 618 WEKDTSVSTLFVNNLRKLG--CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS 675
              D        +  ++LG   G    + L+A            + + I S + KP+ +S
Sbjct: 617 PGIDG------YDLCKRLGEVAGKTPPIVLMAAPSDRHHFREREEDLPIRSTLAKPITAS 670

Query: 676 MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAA 735
            L  SL  AM +    + R+  +  +S  H L   ++++V+D   N K+  + LK+ G  
Sbjct: 671 SLHDSLVEAMSIAAPESQRSRSVEVLSSFHAL---RVMLVEDTAANRKLVTSLLKKRGHI 727

Query: 736 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIE 795
           VV    G++A E      +FD   MD+QMP MDG + T  IR++E              E
Sbjct: 728 VVEAHNGREALEKFR-DDEFDVILMDVQMPIMDGLQTTAAIRQIERE------------E 774

Query: 796 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
            YE       PI+AMTA  +Q   E+CL +GMD Y+SKP + + L
Sbjct: 775 GYEP-----TPIIAMTAHAMQGDREKCLGAGMDAYISKPIDIDDL 814


>gi|428300671|ref|YP_007138977.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
 gi|428237215|gb|AFZ03005.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
          Length = 1595

 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 200/660 (30%), Positives = 326/660 (49%), Gaps = 96/660 (14%)

Query: 200  RFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVA 259
            +++Q     L A++  +GI   A    H+ +   ++   + +    +   KK AEAA+ +
Sbjct: 883  QWQQDEIELLEAVAAQVGI---ALAQAHLLERETSQRELLAQQNQELNIAKKDAEAANRS 939

Query: 260  KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
            KS FLAT+SHEIRTPMN V+GM  +L++T+L  +Q+D+V T ++SG +L++LIN++LD +
Sbjct: 940  KSDFLATMSHEIRTPMNAVIGMTGLLLNTKLTPSQEDFVETIRSSGDSLLTLINDILDFS 999

Query: 320  KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
            K+E+GKL+LE   F LR+ +++ L+L + ++ +K +ELA  I    P  ++GD  R RQI
Sbjct: 1000 KIEAGKLDLEEQPFELRSCVEEALNLVANRALEKKLELACLIDPTTPNIIVGDVTRLRQI 1059

Query: 380  ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
            + NL+ N++KFT  G + V V                                       
Sbjct: 1060 LVNLLSNAVKFTANGEVVVFV--------------------------------------- 1080

Query: 440  TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
              N     S   +S  +L  +  +V+DTG GIP +  +R+F  F QV  S +R +GGTG+
Sbjct: 1081 --NTRSVNSTNSNSDRNLYEIEFAVKDTGIGIPADRMNRLFQSFSQVDASTTRQYGGTGL 1138

Query: 500  GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 559
            GL+I K L   M G+I   S   +GSTF+F     N  +  +E+ +     Q  S  +EF
Sbjct: 1139 GLAICKRLCEMMGGKIWVESEAGVGSTFSF-----NIWAEISENQA----FQEESADNEF 1189

Query: 560  QGMKALVVDPRPIRAKVSRYHIQRLGI---QVEVVSDQLQCLSQ-IASGSKIINMILVEQ 615
             G + L+VD      ++     Q  G+    VE  S+ L+   Q ++    I++M + E 
Sbjct: 1190 LGKRVLIVDDNATNRQILTLQTQSWGMFNCAVESGSEALKLFDQGVSFDLAILDMQMPE- 1248

Query: 616  EVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS 675
                   +  TL     +K  C  ++   ++  SI++   +T  + V   ++I KP++  
Sbjct: 1249 ------MNGITLGEKIRQKPNC--ENMPLVMLTSINAQEISTQINNVEFAAIINKPIQQR 1300

Query: 676  MLAASLQRAMGVGNKGNIRNWELPSMSLRH------LLLGRKILIVDDNNVNLKVAAAGL 729
             L  +L   +G    GN+      +  L++        L  +IL+ +DN VN KVA   L
Sbjct: 1301 QLYRTLGHILG----GNLIKVNQSTTHLQNDQEQLSQNLPLRILLAEDNTVNQKVALLTL 1356

Query: 730  KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789
            +R G        G +  + L     +D   MD+QMPEMDG  AT+ I E +   + R R 
Sbjct: 1357 ERIGYRADLAGNGLEVLQALQ-RQPYDLILMDVQMPEMDGLTATQRICE-QFPDSQRPR- 1413

Query: 790  GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
                             I+AMTA+ +Q   E C+++GMD Y++KP    +L   +S+  P
Sbjct: 1414 -----------------IIAMTANAMQGDREICIKAGMDDYITKPIRVNELRNALSKCQP 1456


>gi|262195772|ref|YP_003266981.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262079119|gb|ACY15088.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 876

 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 198/620 (31%), Positives = 305/620 (49%), Gaps = 103/620 (16%)

Query: 253 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
           AE A +AKS+FLA +SHEIRTPMNGVLGML +L+DT L   Q+DY  TA+AS   L+ +I
Sbjct: 208 AEEASLAKSEFLANMSHEIRTPMNGVLGMLGLLLDTRLAAEQRDYAETARASAMTLLDII 267

Query: 313 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
           N++LD +KVE+G++  E V+F+LR+ ++DV    +  +  K +EL V      P  ++GD
Sbjct: 268 NDILDLSKVEAGQMAFEPVAFDLRSAIEDVFDQLAVLAAPKALELIVRYDPETPSRIVGD 327

Query: 373 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 432
            GR RQ++ NL+GN+IKFT++GH+                  +L ++   L         
Sbjct: 328 AGRIRQVLVNLVGNAIKFTQRGHV------------------QLRATSEEL--------- 360

Query: 433 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492
                      DGS           ++L +SVEDTG GI    + +IF  F Q+  S +R
Sbjct: 361 ----------DDGS-----------VDLKLSVEDTGPGISESEREQIFDKFRQLDVSSTR 399

Query: 493 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 552
            HGGTG+GL+I + LV  M GEIG  S    GSTF F        S   E  S+ ++   
Sbjct: 400 VHGGTGLGLAICRALVHGMGGEIGLESRRGEGSTFWF--------SIPVERASEDVSTIT 451

Query: 553 NSVSSEF---QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASG-S 605
            +    +   + M  LVVD  P++ +     ++      +  S     +  L + A+G  
Sbjct: 452 YTTGPSYMPLRNMHVLVVDDHPLQCEALLEELRAADTHADAASSGRSAMIALRRAAAGDG 511

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
           K  +++L+++++ E D     L + +  +        + +  +++   R  T        
Sbjct: 512 KPFDIVLIDEDMPEMD----ALTLAHHIRADPTISGTVLVFLSTVQRRRGLTELADSGFQ 567

Query: 666 SVIMKPLRSS----MLAASLQRAM---------GVGNKGNIRNWELPSMSLRHLLLGRKI 712
             + KP+  S    +LA   +R +         G+  + ++R+   PS + R L+   ++
Sbjct: 568 GYLRKPVHRSHLLDVLATVWERHLAPDSTSAPRGIVTRHSVRSDHTPSGNWRPLIASARV 627

Query: 713 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGF 770
           L+V+DN VN KVA   L   G  V     G++A +L+  +P   +D  FMD+QMPEMDGF
Sbjct: 628 LVVEDNVVNQKVARRMLSHLGCRVDVAGNGREALQLIDQVP---YDLVFMDVQMPEMDGF 684

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            AT  +R        R+                  PI+AMTA  +    E CL +GMDGY
Sbjct: 685 AATAAVRARPPTDGKRL------------------PIIAMTARAMSGDRERCLAAGMDGY 726

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           VSKP   E L   + ++  P
Sbjct: 727 VSKPIVQEHLGEILLQYLGP 746


>gi|344344646|ref|ZP_08775507.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum 984]
 gi|343803810|gb|EGV21715.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum 984]
          Length = 1400

 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 184/604 (30%), Positives = 285/604 (47%), Gaps = 84/604 (13%)

Query: 249  LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 308
            L  +A+ A  AKS+FL+ +SHEIRTP+NGV+GML +L ++ L   QQ Y+  AQ SG+ L
Sbjct: 747  LANRAKMASRAKSRFLSNMSHEIRTPLNGVIGMLGLLHESPLSADQQRYLEIAQHSGEGL 806

Query: 309  VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 368
            + +IN++LD +KVE+GKLELE + F+L  +LDD ++  +  + +K +EL    +  +P  
Sbjct: 807  LKIINDILDFSKVEAGKLELERIDFDLGELLDDFVATMALHAHEKTLELTCTAAPDIPTA 866

Query: 369  LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 428
            L GDPGR  QI+TNL+GN+IKFTE G + V   L++                        
Sbjct: 867  LRGDPGRVLQILTNLVGNAIKFTEHGEVAVRATLLD------------------------ 902

Query: 429  ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 488
               C                      A  + L ++V DTG GIP + + R+F  F QV P
Sbjct: 903  ---C---------------------DAHQVRLRLAVRDTGIGIPRDKRERLFHGFSQVDP 938

Query: 489  SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 548
            S +R +GGTG+GL+I+K LV  M GE+G  S    GS F     F        E    Q 
Sbjct: 939  SNTRRYGGTGLGLAITKQLVELMGGELGLESTLGQGSIFWCDLPFARQRGPEAE----QH 994

Query: 549  NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---S 605
              QP   S+  +G + LVVD      ++    +   G+ V    D  Q L  +  G    
Sbjct: 995  RPQP---SARLRGARVLVVDDNRHNRELIAAQLSDWGLTVAEAGDGDQALEHLHEGVAQE 1051

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
                + L++  + + D     L +    +          ++  ++  +R        ++ 
Sbjct: 1052 HPFTIALIDVNMPDMDG----LTLGEAIRAEPTLAGTALVMMTALGIAREAERCARHALG 1107

Query: 666  SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 725
              + KP+R   L A+L++ +             P+   RH     ++L+ DDN  N +VA
Sbjct: 1108 LQLTKPMRQRELLATLEQTL-TRPADQPHPVASPTQRARH---PARLLLADDNLTNQQVA 1163

Query: 726  AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785
               L   G    CV  G++  E L   H +D   +D+QMP +DG E T+ IR+      N
Sbjct: 1164 LGILGHLGFDADCVSNGRQVLEALEARH-YDLLLLDVQMPLLDGLETTRHIRDPAQGLLN 1222

Query: 786  RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 845
            R                  +PI+AMTA  ++   E CL +GM+ Y++KP + + L   + 
Sbjct: 1223 R-----------------DIPIIAMTAHALEEDRERCLHAGMNDYLAKPIDRKALAAALE 1265

Query: 846  RFFP 849
            ++ P
Sbjct: 1266 QWLP 1269


>gi|428307527|ref|YP_007144352.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
           9333]
 gi|428249062|gb|AFZ14842.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
           9333]
          Length = 865

 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 193/610 (31%), Positives = 298/610 (48%), Gaps = 80/610 (13%)

Query: 247 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGK 306
           + L++ A  A  AKS+FLAT+SHEIRTPMNGV+GM +++++T+L   QQ +V T + SG+
Sbjct: 173 LALREAALEATRAKSEFLATMSHEIRTPMNGVIGMTELMLNTKLTSQQQHFVETIRHSGE 232

Query: 307 ALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVP 366
           AL+++IN++LD +K+ES KLELE   FN+   L++ L + + K+ +K +ELA  I    P
Sbjct: 233 ALLTIINDILDFSKIESQKLELEKQPFNILNCLEESLDILAPKAAEKNLELAYIIQPNTP 292

Query: 367 ETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGY 426
           + LIGD  R RQII NL+ N++KFT+ G + V++              +L + +N +   
Sbjct: 293 KKLIGDVTRLRQIIINLLSNAVKFTKDGEVLVSI-----------TSHQLPAGEN-IEQN 340

Query: 427 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 486
           P    C+  +                          +V+DTG GIP E   R+F  F QV
Sbjct: 341 PHLKNCYELQ-------------------------FAVKDTGIGIPTERMDRLFQSFSQV 375

Query: 487 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV---FGNGSSTSNEH 543
             S +R +GGTG+GL+ISK L   M G +   S    GS F FT +     +GS      
Sbjct: 376 DSSTTREYGGTGLGLAISKRLTELMGGRMWVESTVGQGSIFYFTIIAPSVADGSLA---- 431

Query: 544 NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 603
                  Q N +  +  G + L+VD      ++     Q  G+     +   + L  ++ 
Sbjct: 432 -------QENIIPPQLVGKQLLIVDDNATNREILMLQGQSWGMLTYAANSGAEALDLLSE 484

Query: 604 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
           G K  +M +++ ++ E D          +R L  G +  L +L+ S+      +  D V 
Sbjct: 485 G-KSFDMAILDMQMPEMD---GLTLAREIRGLPKGEKLPLVMLS-SLGKLEIGSEVDAVK 539

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGN-KGNIRNWELPSMSLRHLL---LGRKILIVDDNN 719
             + + KP++ S L  +L   +     K   RN      S    L   L  +IL+ +DN+
Sbjct: 540 FAAFLYKPIKQSQLFNTLNDILAQQPIKVETRNCASLHTSFDSQLAKQLPLRILLAEDNS 599

Query: 720 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
           VN +VA   L++ G        G +  E L     +D   MD+QMP MDG   T+ I   
Sbjct: 600 VNQQVALYFLEQIGYLADVAANGLEVLEALQ-RQAYDVVLMDVQMPVMDGLATTRQIN-A 657

Query: 780 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
           E+    R R                  I+AMTA+ +Q   EECL++GMD Y+SKP +  +
Sbjct: 658 EYAPTARPR------------------IIAMTANTMQGDKEECLQAGMDDYISKPIQLAE 699

Query: 840 LYREVSRFFP 849
           LY  +S+  P
Sbjct: 700 LYDALSKCQP 709


>gi|34497953|ref|NP_902168.1| hybrid sensory kinase [Chromobacterium violaceum ATCC 12472]
 gi|34332809|gb|AAQ60169.2| probable hybrid sensory kinase [Chromobacterium violaceum ATCC
           12472]
          Length = 738

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 188/610 (30%), Positives = 294/610 (48%), Gaps = 97/610 (15%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           M E K+ AE A  AKS FLA +SHEIRTPMN ++GM  + + T+LD  Q++Y+     +G
Sbjct: 1   MREAKQMAEQATRAKSLFLANMSHEIRTPMNAIIGMSYLALRTDLDDQQRNYIGKIHNAG 60

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            +L+ +IN++LD +KVE+GKLELEA  F L  +LD V +L + K+ DKG+EL    +  V
Sbjct: 61  TSLLGIINDILDFSKVEAGKLELEAQPFWLDDVLDGVSALVAQKAADKGLELLFETAGDV 120

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
           P+ L+GD  R  Q++TNL GN+IKFTE G + + +  VE + D ++++            
Sbjct: 121 PQGLVGDALRLGQVLTNLAGNAIKFTETGQVSIIIGQVERIGDKVQLK------------ 168

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                                 V DTG G+  E QSR+F  F Q
Sbjct: 169 ------------------------------------FCVHDTGIGMSEEQQSRLFQAFSQ 192

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
              S +R  GGTG+GL+I+K LV  M G +   S P  GS+F F+   G  + T      
Sbjct: 193 ADGSTTRRFGGTGLGLTIAKRLVELMGGSMLVESAPGWGSSFIFSCWLGVSAET------ 246

Query: 546 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
              +++  S+  E +G++ LVVD       V    +++LG +V+   +  + LS++    
Sbjct: 247 ---DSRRQSLPKEIRGLRVLVVDDNQSAVDVLCAQLKQLGFEVQGCLNGHEALSKVRQDC 303

Query: 606 --KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
             K  ++  V+  + E D   +   V  +R++    +    ++  +              
Sbjct: 304 LQKPFDVAFVDWMMPEMDGLEA---VRRMRQVS---RKMRIVMVTAFGRDEIRVKARAAG 357

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW----ELPSMSLRHLLLGRKILIVDDNN 719
             + ++KP+  S L   L    G G  G +  +    +LP     HLLL      V+DN 
Sbjct: 358 CDAFMVKPVNLSQLYDVLLEVFGFGRSGGLSLFDETDQLPRFDGAHLLL------VEDNR 411

Query: 720 VNLKVAAAGLKRYGAAVVCVERGKKATELLMP--PHQFDACFMDIQMPEMDGFEATKIIR 777
           +N ++A   L+  GA +     G+ A + L+   P  FDA  MD+QMP MDG EAT  IR
Sbjct: 412 INQQIAIELLEGTGATITVAANGQAALDKLLAYGPKAFDAVLMDVQMPVMDGIEATGRIR 471

Query: 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
             +  F                     +P++AMTAD +    E CL +GM  +++KP + 
Sbjct: 472 S-QPGF-------------------IDLPVIAMTADALVEERERCLAAGMVDHIAKPIDP 511

Query: 838 EQLYREVSRF 847
             L+  ++R+
Sbjct: 512 HILFSTLARW 521


>gi|410672020|ref|YP_006924391.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
 gi|409171148|gb|AFV25023.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
          Length = 1771

 Score =  267 bits (683), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 204/646 (31%), Positives = 305/646 (47%), Gaps = 103/646 (15%)

Query: 224  LVGHIFQATVNRIAKVE-EDYHGMMELKKK--------AEAADVAKSQFLATVSHEIRTP 274
            L+G +   T  ++A+ + + Y   +E+K K        AE A  AKS+FLA +SHEIRTP
Sbjct: 1083 LIGMLVDITERKLAEEKLQTYADEVEIKNKELDRALARAEEATKAKSEFLANMSHEIRTP 1142

Query: 275  MNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFN 334
            MNGV+GM  +L+DTEL+  Q+ YV T QASG+AL+ +IN++LD +K+E+GKLELE + F+
Sbjct: 1143 MNGVIGMTGLLLDTELNEEQRHYVETVQASGEALLEIINDILDFSKIEAGKLELEMLDFD 1202

Query: 335  LRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG 394
            L  +LD   ++ S K+ DKG+E        VP  + GDPGR +QI+TNL GN++KFT  G
Sbjct: 1203 LHNVLDSFAAMLSIKAHDKGLEFICAADPDVPAYISGDPGRLQQILTNLAGNAVKFTHLG 1262

Query: 395  HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 454
                      EVV  +  E+E ++                                    
Sbjct: 1263 ----------EVVVRVTRESETNTE----------------------------------- 1277

Query: 455  ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGE 514
               + L  SV+DTG GI  +    +F  F Q+  S +R + GTG+GL+ISK LV  M G 
Sbjct: 1278 ---VLLRFSVKDTGIGIAEDKIGLLFNQFYQIDASTTRQYSGTGLGLAISKQLVKMMGGN 1334

Query: 515  IGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRA 574
            IG  S    GS F FT  F      + +            + ++ Q  + LVVD      
Sbjct: 1335 IGVKSNEGKGSEFWFTLRFAKRPDGAIK----------KLLPADIQSARILVVDDNATNR 1384

Query: 575  KVSRYHIQRLGIQ-VEVVS--DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNN 631
            ++    +   G   VE V     LQ L +     K  ++ +++  +      +  L +  
Sbjct: 1385 EILISQLSSWGTNPVEAVDGPTALQTLYRAHEDHKPFHVTILDMHM----PGMDGLTLAR 1440

Query: 632  LRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNK- 690
            + K     +    ++  S+         +     + + KPLR S L   L   + +  K 
Sbjct: 1441 IIKSDDKIKDTFLIMLTSLGQWPVMEQLERSYFEAYLTKPLRQSELFDKLSSLLPIDRKI 1500

Query: 691  ----GNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT 746
                 N+    +P     ++    +IL+ +DN VN KVA + LK+ G     V  G +A 
Sbjct: 1501 QEQSSNVNENVVPQRHTNNV----RILLAEDNIVNQKVAQSMLKKLGFRTDTVANGAEAL 1556

Query: 747  ELL-MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 805
            + L M P  +D   MD+QMPEMDG  AT++IR                  +   V N  V
Sbjct: 1557 KALEMIP--YDLVLMDVQMPEMDGLAATRLIR-----------------YSGSAVLNKDV 1597

Query: 806  PILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851
            PI+AMTA  ++   E  + SGMD Y+SKP   E L R + ++   I
Sbjct: 1598 PIIAMTAHAMKGDRERFIESGMDDYISKPVSMEALKRVLDKWLATI 1643


>gi|375149632|ref|YP_005012073.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
 gi|361063678|gb|AEW02670.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
          Length = 1329

 Score =  267 bits (683), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 180/622 (28%), Positives = 310/622 (49%), Gaps = 96/622 (15%)

Query: 229  FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT 288
            F AT+    + ++    +++ K  AE+A+ AKS+F+A +SHE+RTPMNG++G  D+++ T
Sbjct: 783  FAATLAAAIERKQMEQELVQAKDMAESANQAKSEFMANMSHELRTPMNGIIGFTDLVLTT 842

Query: 289  ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 348
             L  +Q+DY+   + S   L+ +IN++LD +K+E+GKL+++  SF +  ++++ + + S 
Sbjct: 843  NLQHSQRDYLENVKKSAYGLLDIINDILDFSKLEAGKLQIDNTSFRIDELVEEAIDILSV 902

Query: 349  KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 408
            K+ +K +E+  +I   +P  + GDP R RQ+  NL+GN+IKFT+KG IFV++        
Sbjct: 903  KAFEKRLEMVCHIDPLLPSRVSGDPVRIRQVFVNLLGNAIKFTQKGEIFVSLK------- 955

Query: 409  SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 468
                                       K    + +DG            I++ +SV DTG
Sbjct: 956  ---------------------------KAGNMYVKDGKK---------FIDIDLSVRDTG 979

Query: 469  QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 528
             GIP E   +IF  F Q   S +R +GGTG+GL+ISK L   M G +   S  N GSTFT
Sbjct: 980  IGIPKEKLVKIFDSFTQADSSTTRKYGGTGLGLTISKSLAELMDGSLQVESETNRGSTFT 1039

Query: 529  FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGM-KALVVDP----RPIRAKVSRYHIQR 583
                             + +N +P    +    + K LVVD     R +  ++ RY    
Sbjct: 1040 LKLPL------------EIVNIEPQITGAYRPPLTKVLVVDDNASNRWLMQEIFRY---- 1083

Query: 584  LGIQVEVVS---DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640
              I  E      + L  L++I   S+ +++I+ +  + E D       V  +R+   G+ 
Sbjct: 1084 FSIACETAHNGREALAILNRIHQNSEPLDLIITDHHMPEMD---GMQLVQEMRRSSQGYT 1140

Query: 641  SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 700
              + ++ +S+  +      + + I   + KP++   L A+L      G +   +   +P 
Sbjct: 1141 PPVIMMLSSLEKNMFQRQAEKLGIHGFLSKPVKLYELYATLSAMFTTGKQQPEKISTIP- 1199

Query: 701  MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA--C 758
              +  +     I++V+D  +N+ +    L + G AV+    GK+A ELL    Q D    
Sbjct: 1200 -VIEKITDAATIMVVEDEPINMLLITEVLGKMGFAVIKATNGKQALELL---QQQDPQLI 1255

Query: 759  FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
            FMD+ MPEMDGF  T++IR++   ++                    +P++A+TAD +Q  
Sbjct: 1256 FMDVNMPEMDGFSTTRLIRQLPQPYS-------------------LIPVIALTADAMQGD 1296

Query: 819  YEECLRSGMDGYVSKPFEAEQL 840
             E+C+ +GM+ Y+SKPF+ E++
Sbjct: 1297 KEKCIEAGMNDYISKPFKLEEI 1318



 Score = 47.8 bits (112), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 25/143 (17%)

Query: 711  KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ----FDACFMDIQMPE 766
            K+L+VDDN  N  +     + +  A      G++A  +L   HQ     D    D  MPE
Sbjct: 1063 KVLVVDDNASNRWLMQEIFRYFSIACETAHNGREALAILNRIHQNSEPLDLIITDHHMPE 1122

Query: 767  MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE-ECLRS 825
            MDG +   +++EM        RR             +  P++ M + + +  ++ +  + 
Sbjct: 1123 MDGMQ---LVQEM--------RRSS---------QGYTPPVIMMLSSLEKNMFQRQAEKL 1162

Query: 826  GMDGYVSKPFEAEQLYREVSRFF 848
            G+ G++SKP +  +LY  +S  F
Sbjct: 1163 GIHGFLSKPVKLYELYATLSAMF 1185


>gi|254482907|ref|ZP_05096143.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214036779|gb|EEB77450.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 998

 Score =  267 bits (683), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 198/650 (30%), Positives = 320/650 (49%), Gaps = 116/650 (17%)

Query: 212 ISTSIGILVIASLVGHIFQA--TVNRIA-KVEEDYHGMMELKKKAEAADVAKSQFLATVS 268
           I+ ++ +L++ SL+  IF+   + +R+A ++E     +     K      AKS+FL+ +S
Sbjct: 301 IAAAVTLLLVISLIVVIFRGYRSKHRLALQLEGKSRELGVANDKLVQVTEAKSRFLSAMS 360

Query: 269 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 328
           HEIRTPMNGV+GM ++L  T+L   Q +YV     S   L+ LIN++LD +K+E+G+L+L
Sbjct: 361 HEIRTPMNGVIGMAELLEGTDLTNQQGEYVSLIIKSADTLLGLINDILDFSKIEAGRLDL 420

Query: 329 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 388
           E + FNLR IL D L   + ++ +K +EL  +I   +P+ LIGDP R RQ+I NL+GN+I
Sbjct: 421 EHIPFNLRDILGDTLQTLALRANEKDIELTFHIPPDIPDKLIGDPLRLRQVIVNLVGNAI 480

Query: 389 KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 448
           KFTE G + V + L                                              
Sbjct: 481 KFTEVGEVAVDLLL---------------------------------------------- 494

Query: 449 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 508
             +S S   I L+  V D+G GI    QS++F  F Q   S +R  GGTG+GL+I++ L 
Sbjct: 495 --QSISDSDIQLVFEVRDSGIGISDAQQSKVFKAFDQADTSTTRQFGGTGLGLAIARQLT 552

Query: 509 GRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS---SEFQGMKAL 565
             M G +   S  N GSTF+F+A FG             +  QP +V+    E +G+ AL
Sbjct: 553 EMMGGTMAVRSKLNEGSTFSFSASFG-------------LPEQPETVALEPQELKGLNAL 599

Query: 566 VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--------ASGSKIINMILVEQEV 617
           VVD       +    +   G+   VV    + L ++        A    ++++++   + 
Sbjct: 600 VVDDNSTNRMILEELLVNWGMSACVVDSGEKALEELKRAEDNNMAFAVALLDVMMPNMDG 659

Query: 618 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS--TDGVSIPSVIMKPLRSS 675
           +E            +R+     ++++ +L    S+ R+NT   +  + I  V++KP +  
Sbjct: 660 FE--------LAARIRQRPKQNKTRILMLT---SAGRSNTEQISQRLDISRVLLKPTKQF 708

Query: 676 MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG---RKILIVDDNNVNLKVAAAGLKRY 732
            L  ++  A+GV     ++        +++L+ G   R++L+V+DN VNLKVA   L++ 
Sbjct: 709 DLQRAITDALGVTTSHTVKK-------VQNLVPGPEARRVLLVEDNPVNLKVALELLRKR 761

Query: 733 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 792
           G + + V R             FD   MD+ MP MDG  AT+IIRE E       R  +V
Sbjct: 762 GHS-IEVARNGAEAVEAAAKEDFDVVLMDVHMPVMDGLTATRIIRERE-------RVDKV 813

Query: 793 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
           +          HVPI+A+TA       E  + +GM  +VSKPF++++L++
Sbjct: 814 A----------HVPIIALTAGATLEDRENSITAGMTDFVSKPFKSDELFQ 853


>gi|347757673|ref|YP_004865235.1| sensory box protein [Micavibrio aeruginosavorus ARL-13]
 gi|347590191|gb|AEP09233.1| sensory box protein [Micavibrio aeruginosavorus ARL-13]
          Length = 1341

 Score =  267 bits (683), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 186/630 (29%), Positives = 308/630 (48%), Gaps = 105/630 (16%)

Query: 226  GHIFQ--ATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 283
            GH+ +       + ++E+    + + + +A++A+ AKS FLA +SHEIRTPMNG++GM  
Sbjct: 631  GHVIRIVGAHTDVTEIEQANRNLKKARDEADSANRAKSDFLANMSHEIRTPMNGIIGMTH 690

Query: 284  MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 343
            +L++T+LD  Q+ Y +T   S ++L+ +IN++LD +K+E+GK+ELE + F+ + + +DV 
Sbjct: 691  LLLETKLDSRQRHYAQTVGQSAESLLQIINDILDFSKIEAGKMELENIPFDFQLLCEDVS 750

Query: 344  SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 403
             +   ++Q+KG+E  +      P+ L GDP R RQI+ NL GN+IKFT++G++ V V   
Sbjct: 751  EMMFVRAQEKGIEFLLSWDPDCPQFLFGDPVRIRQILFNLCGNAIKFTDEGYVLVKV--- 807

Query: 404  EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 463
                                            K   T  +DG T           +L +S
Sbjct: 808  --------------------------------KHLGT--RDGHT-----------DLRIS 822

Query: 464  VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 523
            V DTG GI  E Q+ +F  F Q   S +R +GGTG+GL+ISK L   M G I   S P +
Sbjct: 823  VVDTGIGIAKEKQALVFNKFDQADGSTTRRYGGTGLGLTISKQLAELMGGHISLTSEPGV 882

Query: 524  GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 583
            GSTF+            +   + ++ +   +      G++AL++D   +  ++   ++  
Sbjct: 883  GSTFSVHLTLSVAPRPKSYVRAPELEDFDGT------GIRALIIDDNIMSCEIFDTYLSS 936

Query: 584  LGIQVEVVSDQLQCLSQIASG---SKIINMILVEQEVWEKD-TSVSTLFVNNLRKLGCGF 639
            +G+ VE  S+    LS++       +  + ++V+  +   D  S+ +L   N +      
Sbjct: 937  IGMNVETESNPYNVLSKMERAVDEGRPYSFLIVDYAMPGMDGISLCSLIAQNKK-----I 991

Query: 640  QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML---AASLQRAMGVGNKGNIRNW 696
            Q  + ++A S              I   + KP+R S L    A+L +A   G    +   
Sbjct: 992  QGAIAIMATSQPGRTDIERMQRAGIKGYLSKPVRPSELISVIATLWKARKTGEDMGL--- 1048

Query: 697  ELPSMSLRHLLLGR------------KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 744
             +   +L     GR            ++L+V+DN VN +V  A L  YG     V+ G+ 
Sbjct: 1049 -VTRFTLDEQWAGRIRGPDDLYFKDTRVLVVEDNQVNQEVMVAMLDHYGIRSAVVDNGRD 1107

Query: 745  ATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH 804
            A   +M    FD  FMD QMP MDG+EAT+ +R+          +G   I+         
Sbjct: 1108 AVR-IMREQDFDLVFMDCQMPIMDGYEATRTVRK---------EKGGQDIK--------- 1148

Query: 805  VPILAMTADVIQATYEECLRSGMDGYVSKP 834
              I+AMTA+ ++   E+C+ +GMD Y+SKP
Sbjct: 1149 --IIAMTANAMKGDREKCIAAGMDDYLSKP 1176



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 15/133 (11%)

Query: 10  RVLRSEREEFE--KQQGWTIKRMDTFEHNPVHKD--EPSPIEEEYAPVIFAQ-DTVSHVI 64
           RVL SER EFE  +QQ +       F   PV  D  E SP  +EY P+ F + D+ +  I
Sbjct: 273 RVLDSERAEFEALRQQEYP----GFFIKAPVGPDAWERSPRRDEYYPIEFIEPDSFNRYI 328

Query: 65  SLDMLSGKEDRENVLRARASGKGVLTAPFRLL---KTNRLGVILTFAVYKR-ELPSNATP 120
             D+ + +      +RAR SG  V+T+  +LL   ++++ G +L   VY+R  L +N   
Sbjct: 329 GYDLSANEGRYAAFIRARDSGNAVITSRIKLLPDEESDQYGFLLVLPVYERGALITNVA- 387

Query: 121 NERIEATDGYLGG 133
            +R +A  G++ G
Sbjct: 388 -QRRDALMGFVAG 399


>gi|427421152|ref|ZP_18911335.1| PAS domain S-box [Leptolyngbya sp. PCC 7375]
 gi|425757029|gb|EKU97883.1| PAS domain S-box [Leptolyngbya sp. PCC 7375]
          Length = 1053

 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 195/616 (31%), Positives = 305/616 (49%), Gaps = 94/616 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +  A AA   KS+FLAT+SHEIRTPMN V+GM  +L+DT L   Q+++V T + SG AL+
Sbjct: 354 RDDALAATKTKSEFLATMSHEIRTPMNAVIGMTSLLLDTALTDEQRNFVTTVRNSGNALL 413

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           +LIN++LD +K+ESG LELEA  F+LRA +++   L + K+ +K +ELA  I   +P T 
Sbjct: 414 TLINDILDFSKIESGHLELEAHPFDLRACIEEAFDLIAAKASEKQLELAFNIDSAIPNTF 473

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GD  R RQ++ NL+GNS+KFT +G I ++V                             
Sbjct: 474 VGDVTRLRQVLVNLLGNSVKFTHRGEISISVT---------------------------- 505

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLI----NLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
               +WK         S+SP +  S  L     +L  +V+DTG GIP +  +R+F  F Q
Sbjct: 506 ----NWK---------SSSPAEPGSKSLAETHQSLCFAVKDTGIGIPTQRIARLFKAFSQ 552

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
           V  S +R +GGTG+GL+I K L   M G+I   S  + GSTF FT        T+ E +S
Sbjct: 553 VDSSTTRKYGGTGLGLAICKQLTEMMGGKIWVESQVDQGSTFFFTITL----QTTVEKSS 608

Query: 546 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
           ++      S SS+  G + L+VD      ++     Q  G+         + L     G 
Sbjct: 609 RKR----ISPSSQLVGKRLLIVDNNATNRQILEKQTQSWGMLTRTTCSGAEALKCFERG- 663

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
           ++ ++ +++ ++ E D       +++L       +S   ++  S+   + +         
Sbjct: 664 EVFDLAILDMQMPEMDGMTLAQEIHDLPDQ----KSLPLMMLTSVGKYQISQVDIEKHFV 719

Query: 666 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS---MSLRHLLLGR---KILIVDDNN 719
           + + KP++ + L  +L R       G    +E P     ++ H L  +   +IL+ +DN 
Sbjct: 720 AFLNKPIKQAQLLENLVRLCA----GKFVKFEQPKKLVTTIDHHLAKKHPLQILLAEDNG 775

Query: 720 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
           VN ++A   LK+ G     V  G +A   L     +D   MD+QMP+MDG  AT+ I E 
Sbjct: 776 VNQQLATQLLKKMGYRADLVGNGLEAINAL-ERQSYDVILMDLQMPDMDGLTATQKICE- 833

Query: 780 EHNFNNRIRRGEVSIEAYENVSNFHVP-ILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
           + +  NR                   P I+A+TA+ +Q   E CL++GMD Y+SKP   E
Sbjct: 834 QWSAANR-------------------PWIIAVTANAMQGDREACLKAGMDDYISKPIRIE 874

Query: 839 QLYREVSRFFPPIPDR 854
           +L   + R    +P R
Sbjct: 875 ELVAALQR----VPSR 886


>gi|445494035|ref|ZP_21461079.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
 gi|444790196|gb|ELX11743.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
          Length = 1016

 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 180/601 (29%), Positives = 292/601 (48%), Gaps = 89/601 (14%)

Query: 253 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
           AE A   KS FLA +SHEIRTPMNG++GM  + + TEL   Q++Y+   +++ + L+ +I
Sbjct: 272 AEDATKMKSDFLANMSHEIRTPMNGIIGMTHLALQTELSPKQRNYLEKVESAARNLLGII 331

Query: 313 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
           N++LD +K+E+GKL  E V F +  ++ ++  L   ++QDKG+EL   I+  VP+ L+GD
Sbjct: 332 NDILDFSKIEAGKLAFEQVDFYVEDVMANIADLSVMRAQDKGLELLFDIAPDVPQVLVGD 391

Query: 373 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 432
           P RF Q++ NL  N+IKFT++G I VT+ ++E + D                        
Sbjct: 392 PLRFGQVMINLTNNAIKFTQQGEIVVTIRVLERLPD------------------------ 427

Query: 433 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492
                                  + + L + V DTG G+  E Q+R+F  F Q   S +R
Sbjct: 428 -----------------------ERVRLRIDVRDTGPGLTPEQQARLFQAFTQADTSTTR 464

Query: 493 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 552
            HGGTG+GL+ISK LV  M GEIG  S P +GSTF F+AVFG G+             +P
Sbjct: 465 HHGGTGLGLTISKRLVELMDGEIGLESQPGVGSTFHFSAVFGIGAV-----------EEP 513

Query: 553 NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA---SGSKIIN 609
             +  +  G++ LVVD      ++    +  +           + +  +A   S  +  N
Sbjct: 514 LPL-PDISGLRVLVVDDNASAREIFMGMLSSMRFAAACADGGQRAIDMVAQARSEGRPFN 572

Query: 610 MILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
           ++L++   W+      + TL     +    G  +  F++  + +         G++I ++
Sbjct: 573 IVLLD---WQMPGMNGLETLQAIRAQAEADGVDAPAFIMVTAYNRDVLMDEARGIAIDAM 629

Query: 668 IMKPLRSSMLAASLQRAMGVG-NKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
           + KP+ SS L  S+    G               M+    + G  +L+V+DN VN +VA 
Sbjct: 630 LNKPVSSSTLLDSVSTVFGKDLRSCRRTRRRADHMAAEEAVRGAWLLLVEDNEVNQEVAQ 689

Query: 727 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
             L   G  V     G  A   L     +D   MD QMP MDG++AT+ +RE +  + N 
Sbjct: 690 QILSDAGIRVDIAANGAMALAKL-AVADYDGVLMDCQMPVMDGYDATRKLRE-DARYAN- 746

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
                             +P++AMTA+ +    E+CL +GM+ +++KP +  QL+  ++R
Sbjct: 747 ------------------LPVIAMTANAMVGDKEKCLDAGMNDFIAKPIDVAQLFTTLAR 788

Query: 847 F 847
           +
Sbjct: 789 W 789


>gi|71906576|ref|YP_284163.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal:Hpt
           [Dechloromonas aromatica RCB]
 gi|71846197|gb|AAZ45693.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Dechloromonas aromatica RCB]
          Length = 852

 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 204/710 (28%), Positives = 343/710 (48%), Gaps = 111/710 (15%)

Query: 159 YDITNLSHPISMYGSNVSDDGLWLVST---LNFGDPFRKHEMRCRFKQK-APWPLLAIST 214
           Y   +L + I+ +   V  D L L+ T    +  +     +  CRFK +   W    +  
Sbjct: 94  YADGDLDNSIAQWQRMVHPDDLRLLQTRIEAHIQNQDSHFQAECRFKARDGQWRWFLLRG 153

Query: 215 SIGILVIASLVGHIFQATVNR-IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRT 273
           ++           +    + R I+ V+     ++  K+ AE+A+ A+  FLA +SHEIRT
Sbjct: 154 AVAARNAEGKPARVL--VLQRDISDVKAAESALISAKEVAESANKARGAFLANMSHEIRT 211

Query: 274 PMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 333
           PMNG++GM ++ +DT+LD  Q+ Y++T ++S +AL++++N++LD +K+E+GK+E E++ F
Sbjct: 212 PMNGIIGMTELALDTQLDAEQRHYLKTVKSSAEALLTIVNDILDFSKIEAGKMEFESLVF 271

Query: 334 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK 393
           +++  + + + + +  +  KG+EL   +   VP  ++GDP R RQ+I NL+GN+IKFTE+
Sbjct: 272 SMQDTVLEAVRVLAVSAHKKGLELVADVRPEVPARIVGDPTRLRQVIINLIGNAIKFTER 331

Query: 394 GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 453
           G +            +++VE + S+ ++                                
Sbjct: 332 GEV------------ALKVEVDQSTERS-------------------------------- 347

Query: 454 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKG 513
               + L  S+ DTG G+P + Q  IF  F Q   S +R  GGTG+GL+IS  LV  M G
Sbjct: 348 ----VYLRFSIRDTGIGVPADKQQAIFEAFSQADVSTTRRFGGTGLGLAISARLVQLMDG 403

Query: 514 EIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIR 573
           +I   S P  GS F+FT  FG   +TS                + F G + LV++     
Sbjct: 404 KIWLESTPGQGSVFSFTGRFGVQEATS-----------VRPFEARFGGRRVLVIED---N 449

Query: 574 AKVSRYHI---QRLGIQVEVVSDQLQCLSQIASGSKI---INMILVEQEVWEKDTSVSTL 627
           A V +Y +   ++LG+QV +V+D    ++ +     +    + +L +  +   D      
Sbjct: 450 ATVGQYLVELLEQLGVQVSLVADGAAAVAAMERSRAMDFPYDYVLADANM---DAPAGFA 506

Query: 628 FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687
                 +   G   KL ++  + +     +    + + + ++KP+  + L  +L  A G 
Sbjct: 507 LAEAWGR--SGRVEKLIVMLTTENQRHDLSRLREIGVSAHLVKPIGGADLIDALALADGP 564

Query: 688 GNKGNIRNWELPSMSLRHLLL---------GRKILIVDDNNVNLKVAAAGLKRYGAAVVC 738
           GN+      EL   +L  +           G  IL+V+DN VN ++A   L+R    V  
Sbjct: 565 GNQ------ELSEFALSEINFDGVAKEDSSGLNILLVEDNPVNQELATRLLERQSHRVSL 618

Query: 739 VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYE 798
              G +A +L    H FD   MD+QMP M G EAT+ IR  E      +RR  V      
Sbjct: 619 ANNGAEAVDLFDSGH-FDVILMDMQMPVMGGIEATEAIRSRE------MRRSWV------ 665

Query: 799 NVSNFHVP--ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
            VS+   P  I+AMTA+V+    + CL +GM+ YV+KP  +E+LY  + R
Sbjct: 666 -VSHELKPVYIIAMTANVMATDRDRCLEAGMNDYVAKPLRSEELYAALER 714


>gi|410664806|ref|YP_006917177.1| MmoS protein [Simiduia agarivorans SA1 = DSM 21679]
 gi|409027163|gb|AFU99447.1| MmoS protein [Simiduia agarivorans SA1 = DSM 21679]
          Length = 798

 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 190/595 (31%), Positives = 281/595 (47%), Gaps = 86/595 (14%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K  AE A+ AKSQFLAT+SHEIRTPMNGV+GM+++L DT L+ TQQ Y+     SG+ L+
Sbjct: 268 KAVAETANRAKSQFLATMSHEIRTPMNGVIGMVELLRDTPLNATQQHYLDVIHRSGETLI 327

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +IN++LD +K+E+GK+ELE+  FNL  +++D + LF   +  + +EL   +S   P  L
Sbjct: 328 DIINDILDYSKIEAGKMELESAPFNLEDLVEDCVQLFGATANKRHIELIGSVSPTTPLNL 387

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R RQ++ NL+GN+ KFT +G++ V            E   E              
Sbjct: 388 MGDPTRLRQLLINLIGNAFKFTSEGYVIV------------EARRE-------------- 421

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                ++S  D   +  S+ D+G GI  E  +R+F  F Q   S
Sbjct: 422 ---------------------ENSDPDQPTIRFSIRDSGIGINDEGMARLFQSFSQADSS 460

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R  GGTG+GL+I K L   M GEIG VS    GSTF FTA F        +    ++ 
Sbjct: 461 TTRKFGGTGLGLAICKRLAEMMGGEIGVVSTEGKGSTFWFTARF--------QREQIKLP 512

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
            + N+      G + LVV+     A +  +H +  GI V  ++D    L  + + +    
Sbjct: 513 AKSNTSGGALAGKRLLVVEDNIYLADIISHHCKSWGIHV-FIADSESALDHLLADNHAAG 571

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
                 +    D  V  L             + + + ++ +  S          I  V  
Sbjct: 572 FDFAYLDYEMPDVDVLALSKKIQHYRDAPVPTAMQIGSDIMPESE---QLQAAGIAEVRR 628

Query: 670 KPLRSSMLAASLQRAMGVGN---KGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
           KP+    L  +L   +G+     + +++   L   S  HL    K+L+ +DNNVN  V  
Sbjct: 629 KPVTPKKLKQALSGLLGIDTGHAEASVKENNLKLYS--HL----KVLVAEDNNVNRMVIK 682

Query: 727 AGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785
             L ++G     VE GK A E +  P   FD   MD +MPEMDGFEAT+ IRE E     
Sbjct: 683 GMLGKFGIEPEMVENGKLAFEAVTAPDADFDLVLMDCEMPEMDGFEATRCIREYE----- 737

Query: 786 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
             RR  +              I+A+TA  +Q   E   ++GM+ Y+SKP   + L
Sbjct: 738 --RRNMLP----------DTLIVALTAHAMQEHREAVYQAGMNHYMSKPVTVDAL 780


>gi|125536525|gb|EAY83013.1| hypothetical protein OsI_38233 [Oryza sativa Indica Group]
          Length = 1019

 Score =  266 bits (681), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 144/258 (55%), Positives = 176/258 (68%), Gaps = 18/258 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV  SERE FE+QQ W+I+ M+             P  EEYAPVIFAQD   HV+S+DML
Sbjct: 101 RVTHSERELFERQQAWSIRAMNF--------SSKRPRAEEYAPVIFAQDAYKHVVSIDML 152

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG EDR N+LRAR SGK VLTAPF+LL   R+GV+LT+AVYK ELP NAT ++RI+++ G
Sbjct: 153 SGAEDRGNLLRARESGKVVLTAPFQLL-NKRIGVVLTYAVYKSELPLNATVHDRIQSSIG 211

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGS-NVSDDGLWLVSTLNF 188
           YLGG+FDIE  V+KLL +LA K+ + VN+YD T  S  I MYGS N S  G+  VSTL+F
Sbjct: 212 YLGGVFDIEGHVDKLLEKLAGKEPMTVNIYDTTGESM-IRMYGSSNESASGMCHVSTLDF 270

Query: 189 GDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMME 248
           GDP RKHEM CRF Q  PWP LA+++S G LVI+ LVG+IF  T   IAKVE+ Y     
Sbjct: 271 GDPLRKHEMHCRFTQGPPWPWLAVASSYGTLVISLLVGYIFHFTDKWIAKVEDGY----- 325

Query: 249 LKKKAEAADVAKSQFLAT 266
             K  +    AK +F AT
Sbjct: 326 --KATDMQMPAKDEFAAT 341


>gi|428304414|ref|YP_007141239.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
           9333]
 gi|428245949|gb|AFZ11729.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
           9333]
          Length = 1100

 Score =  266 bits (681), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 185/596 (31%), Positives = 302/596 (50%), Gaps = 82/596 (13%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K  AE+A  AKS+FLA +SHEIRTP+N V+GM  +L+DT LD  QQ++  T ++SG+AL+
Sbjct: 439 KIAAESATRAKSEFLANMSHEIRTPLNAVIGMTTLLLDTHLDPQQQNFTETIRSSGEALL 498

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           +L+N++LD +K+ESGKL+L+   FNLRA +++ L L + K+ +K +ELA  I    P+T+
Sbjct: 499 TLVNDILDFSKIESGKLDLDQYPFNLRACIEESLDLIASKAGEKKLELAYLIYPPTPKTI 558

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GD  R RQI+ N++ N++KFT  G + VTV        + ++ ++LS   N    Y + 
Sbjct: 559 VGDHNRLRQILVNILSNAVKFTPAGEVVVTV--------TTKILSKLSEVDNFPQKYEIQ 610

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                            +++DTG GIP +   ++F  F QV  S
Sbjct: 611 --------------------------------FAIKDTGIGIPNDRIEKLFQSFSQVDSS 638

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R +GGTG+GL+ISK LV  M G+I   S  + GSTF FT +  +    ++ HN+++++
Sbjct: 639 TTRHYGGTGLGLAISKQLVELMDGQIWVESEVDRGSTFNFTLIVESTQDQADIHNTKEIH 698

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
                      G + L+VD      +V    +Q   I     +   + LS + +     +
Sbjct: 699 --------PLSGKRILIVDNNITNQQVLILQMQCWKIITRAATSVQEALSLLQAEQ--FD 748

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKL-GCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 668
           + ++++++ E D     +  + +R+L  C  Q+   ++ NS+ + +             +
Sbjct: 749 LAILDRQMPEMD---GVMLTSAIRQLPSC--QNLPLVMLNSLGNDQITEQNSEADFAGFL 803

Query: 669 MKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR---KILIVDDNNVNLKVA 725
            KP++ S L  +L  A+  G    + ++          L  R   +IL+ +D  VN K+ 
Sbjct: 804 NKPVKQSQL-YNLLVAIFTGQSIKLTSYHPNQAKFDPHLATRIPLRILVAEDFVVNQKMI 862

Query: 726 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785
              L+R G        G +  E L     +D   MD+QMPEMDG EAT+ IR        
Sbjct: 863 LLMLERMGYRADIANNGFEVLEALH-RQPYDLVLMDVQMPEMDGLEATRSIR-------- 913

Query: 786 RIRRGEVSIEAYENVSNFHVP-ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                       +N ++   P I+A+TA+ +Q   E CL +GMD Y+SKP   E+L
Sbjct: 914 ------------QNTTSCPQPRIIAITANAMQGDKEACLEAGMDDYLSKPVRVEEL 957


>gi|302879767|ref|YP_003848331.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
            ES-2]
 gi|302582556|gb|ADL56567.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
            ES-2]
          Length = 1233

 Score =  266 bits (681), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 182/608 (29%), Positives = 289/608 (47%), Gaps = 95/608 (15%)

Query: 245  GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
             + + K+ AEAA  AK  FLA +SHEIRTPMNG++GM ++ +DTEL+  Q++Y+   Q+S
Sbjct: 588  ALRQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTELALDTELNSEQREYLGLVQSS 647

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
              AL++++N++LD +K+ESGKL++E + F+L  +L + +   + ++  K +EL ++++  
Sbjct: 648  ADALLTILNDILDFSKIESGKLDIENIEFSLEHMLRETMKSLAVRAHQKQLELLLHVAPD 707

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            VP+ L+GDPGR RQ+I NL+GN+IKFT  G I V V                      L 
Sbjct: 708  VPDRLLGDPGRLRQVIVNLVGNAIKFTASGEIEVDV--------------------QCLK 747

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
            G P                              + +  SV DTG GI  +    IF  F 
Sbjct: 748  GAPEGQ---------------------------MRMQFSVRDTGIGIARDKFQTIFESFS 780

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   S +R +GGTG+GL+IS  LV  M G I   S    GS F FT      S +     
Sbjct: 781  QADTSTTRRYGGTGLGLTISAQLVSLMGGSIALESEVGQGSNFYFTLDMPMLSVSPLAEY 840

Query: 545  SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS- 603
             Q         +    GM  L+ D      ++ +  +    +   V S+  + L ++A  
Sbjct: 841  QQ---------TGRIAGMTVLIADDNATNRRLLQEMLTNWKMHPVVTSNGQEALDELARA 891

Query: 604  -------GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                   G  ++++ + + + +E           ++R+        L +L +      A+
Sbjct: 892  TASGHPYGLALLDLQMPDMDGFE--------LAEHIREHPEYLVKTLMMLTSEGQRGHAS 943

Query: 657  TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
               + + + + +MKP+  S L  ++  A+GV  +       L  M  R       +L+ +
Sbjct: 944  RCRE-LGVAAYLMKPIAQSELFDAIMTALGVSEQPLTTRHSLKEMRRR-----LNLLLAE 997

Query: 717  DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
            DN VN  +A   L + G  V     G +A +L      FDA  MD+ MPEM+G++AT+ I
Sbjct: 998  DNAVNQTLATRLLTKLGHTVTVANNGIEAVQLWQNG-SFDAILMDVDMPEMNGYDATRCI 1056

Query: 777  REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
            RE E                       H+ I+AMTA  +Q   EECL +GMDGY++KP +
Sbjct: 1057 REQEQQLG----------------VGAHIRIVAMTAHAMQGAREECLLNGMDGYLTKPID 1100

Query: 837  AEQLYREV 844
             E L++E+
Sbjct: 1101 TEALWQEL 1108


>gi|398997231|ref|ZP_10700060.1| PAS domain S-box [Pseudomonas sp. GM21]
 gi|398124448|gb|EJM13958.1| PAS domain S-box [Pseudomonas sp. GM21]
          Length = 1328

 Score =  266 bits (681), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 185/610 (30%), Positives = 294/610 (48%), Gaps = 84/610 (13%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            ++ AE A  AKS FLAT+SHEIRTPMN ++GM  + + TELD  Q++Y+     S + L+
Sbjct: 587  REAAEEATRAKSNFLATMSHEIRTPMNAIIGMSHLALRTELDHRQRNYIEKVHRSAEYLL 646

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            ++IN++LD +++E+GK+ LE + F+L  +LD   ++   K++DKG+EL   I+  +P  L
Sbjct: 647  AIINDILDFSRIEAGKMHLEHIPFHLENVLDGFANMIGLKAEDKGLELLFNIAAELPTAL 706

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            IGDP R  QI+ NL  N+ KFTE+G I + V L                           
Sbjct: 707  IGDPLRLGQILVNLGNNATKFTEQGEIVLGVEL--------------------------- 739

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                 + ++ +  +L   V D+G G+  E  SR+F PF Q   S
Sbjct: 740  ---------------------RGAAGEEAHLHFWVRDSGIGMSTEQCSRLFQPFSQADSS 778

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+IS++LV  M G I   S P  GSTF F    G       +   ++M 
Sbjct: 779  TTRKYGGTGLGLAISRHLVELMGGSIWVESEPGHGSTFHFEVSLG----VQRDVQLRRM- 833

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSK 606
                + + E  G + LVVD      ++     +  G++V+V       L  L +  + ++
Sbjct: 834  ----ATADELFGSRVLVVDDNASAREILSGMTRSFGVEVDVAQSGPAALTLLLEAEAKAQ 889

Query: 607  IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
              +++L++  +   D  V T+      KL     S + + A     +R   S  G+ +P 
Sbjct: 890  PYDLVLMDWRMPGMD-GVETVRQMQAAKLA-QTPSVIMVTAFGREEAREEASRQGIQLPV 947

Query: 667  VIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL--PSMSLRHLLLGRKILIVDDNNVNLKV 724
            V+ KP+  S L  +L R +G   + + R  E    S S    L G ++L+V+DN +N ++
Sbjct: 948  VLTKPVTPSTLLEALGRVLGKIPQTDTRASERLDHSASTMASLRGARLLLVEDNELNREL 1007

Query: 725  AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
            A   L+  G  +     G +A + L      D   MD QMP MDG+ AT+ IRE     N
Sbjct: 1008 ACELLESAGIELCLAVNGAEALDQLERDADLDGVLMDCQMPVMDGYTATRKIREQSRWAN 1067

Query: 785  NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                +P++AMTAD +    E  L  GM+ ++SKP   E ++  +
Sbjct: 1068 --------------------LPVIAMTADAMAGDRERALACGMNDHISKPLNVEDMFATL 1107

Query: 845  SRFFPPIPDR 854
            +++  P P R
Sbjct: 1108 AKWIHPRPGR 1117


>gi|45861625|gb|AAS78641.1| putative cytokinin receptor [Oryza sativa]
 gi|77555555|gb|ABA98351.1| CHASE domain containing protein, expressed [Oryza sativa Japonica
           Group]
 gi|110331745|dbj|BAE97710.1| receptor-like serine/threonin kinase [Oryza sativa Japonica Group]
 gi|125579248|gb|EAZ20394.1| hypothetical protein OsJ_36000 [Oryza sativa Japonica Group]
          Length = 948

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 144/258 (55%), Positives = 176/258 (68%), Gaps = 18/258 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV  SERE FE+QQ W+I+ M+             P  EEYAPVIFAQD   HV+S+DML
Sbjct: 101 RVTHSERELFERQQAWSIRAMNF--------SSKRPRAEEYAPVIFAQDAYKHVVSIDML 152

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG EDR N+LRAR SGK VLTAPF+LL   R+GV+LT+AVYK ELP NAT ++RI+++ G
Sbjct: 153 SGAEDRGNLLRARESGKVVLTAPFQLL-NKRIGVVLTYAVYKSELPLNATVHDRIQSSIG 211

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGS-NVSDDGLWLVSTLNF 188
           YLGG+FDIE  V+KLL +LA K+ + VN+YD T  S  I MYGS N S  G+  VSTL+F
Sbjct: 212 YLGGVFDIEGHVDKLLEKLAGKEPMTVNIYDTTGESM-IRMYGSSNESASGMCHVSTLDF 270

Query: 189 GDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMME 248
           GDP RKHEM CRF Q  PWP LA+++S G LVI+ LVG+IF  T   IAKVE+ Y     
Sbjct: 271 GDPLRKHEMHCRFTQGPPWPWLAVASSYGTLVISLLVGYIFHFTDKWIAKVEDGY----- 325

Query: 249 LKKKAEAADVAKSQFLAT 266
             K  +    AK +F AT
Sbjct: 326 --KATDMQMPAKDEFAAT 341


>gi|115488474|ref|NP_001066724.1| Os12g0454800 [Oryza sativa Japonica Group]
 gi|113649231|dbj|BAF29743.1| Os12g0454800, partial [Oryza sativa Japonica Group]
          Length = 959

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 144/258 (55%), Positives = 176/258 (68%), Gaps = 18/258 (6%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           RV  SERE FE+QQ W+I+ M+             P  EEYAPVIFAQD   HV+S+DML
Sbjct: 112 RVTHSERELFERQQAWSIRAMNF--------SSKRPRAEEYAPVIFAQDAYKHVVSIDML 163

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG EDR N+LRAR SGK VLTAPF+LL   R+GV+LT+AVYK ELP NAT ++RI+++ G
Sbjct: 164 SGAEDRGNLLRARESGKVVLTAPFQLL-NKRIGVVLTYAVYKSELPLNATVHDRIQSSIG 222

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGS-NVSDDGLWLVSTLNF 188
           YLGG+FDIE  V+KLL +LA K+ + VN+YD T  S  I MYGS N S  G+  VSTL+F
Sbjct: 223 YLGGVFDIEGHVDKLLEKLAGKEPMTVNIYDTTGESM-IRMYGSSNESASGMCHVSTLDF 281

Query: 189 GDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMME 248
           GDP RKHEM CRF Q  PWP LA+++S G LVI+ LVG+IF  T   IAKVE+ Y     
Sbjct: 282 GDPLRKHEMHCRFTQGPPWPWLAVASSYGTLVISLLVGYIFHFTDKWIAKVEDGY----- 336

Query: 249 LKKKAEAADVAKSQFLAT 266
             K  +    AK +F AT
Sbjct: 337 --KATDMQMPAKDEFAAT 352


>gi|390949113|ref|YP_006412872.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
 gi|390425682|gb|AFL72747.1| PAS domain S-box [Thiocystis violascens DSM 198]
          Length = 1524

 Score =  266 bits (680), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 187/612 (30%), Positives = 295/612 (48%), Gaps = 90/612 (14%)

Query: 248  ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            E   +AE A VAKS+FLA +SHEIRTPMNGV+GM  +L++T+LD  Q+ +    +ASG++
Sbjct: 848  EQAARAEMASVAKSEFLANMSHEIRTPMNGVIGMTGLLLETDLDDEQRHFAEVVRASGES 907

Query: 308  LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
            L+ LIN++LD +K+E+GKL+LE + F+L   L+D  +  + ++Q+KG+E        VP 
Sbjct: 908  LLRLINDILDFSKIEAGKLDLEMLDFDLSLSLEDFATALALRAQEKGLEFLCDADPEVPA 967

Query: 368  TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 427
             L GDPGR RQI+TNL GN+IKFT  G + + V ++EE  +                   
Sbjct: 968  FLRGDPGRLRQILTNLAGNAIKFTPSGEVAIRVSVLEERTED------------------ 1009

Query: 428  VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487
                                          + L  +V DTG GIP +    +F  F QV 
Sbjct: 1010 ------------------------------VLLRFAVRDTGIGIPEDKLGLLFDKFSQVD 1039

Query: 488  PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 547
             S +R +GGTG+GL+ISK L   M GE+G +S    GS F FTA       +++    +Q
Sbjct: 1040 ASTTRQYGGTGLGLAISKQLAALMDGEVGVISQAGKGSEFWFTARLAKQPESAH----RQ 1095

Query: 548  MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG--- 604
            +     S+ ++  G++ L+VD      ++    +   G++     D  + L ++A     
Sbjct: 1096 L-----SLPADLLGVRVLIVDDNATNREILMTRLTSWGMRPAEARDGPEALRRLAGALDE 1150

Query: 605  SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
                 + +++ ++ E D       +    +L     +++ +L  S+           +  
Sbjct: 1151 PDPFRVAVIDMQMPEMDGETLGRAIGADSRLA---DTRMVML-TSLGMRGDARRFQELGF 1206

Query: 665  PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR------KILIVDDN 718
             + I KP+R   L A L   +   +   + +  + +  L   +L        +IL+ +DN
Sbjct: 1207 AAYITKPIRHEELKAVLSLVLTARSPAEMVSRPIATRYLAREILNLFAGCKVRILLAEDN 1266

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
              N +VA   LK+ G     V  G +A T L   P  +D   MD+QMP MDG EAT+ IR
Sbjct: 1267 TTNQQVALGILKKMGLHADAVANGAEAVTALASIP--YDLVLMDVQMPVMDGLEATRAIR 1324

Query: 778  EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
                              +   V N  +PI+AMTA  ++   E+CL +GM+ YVSKP   
Sbjct: 1325 -----------------ASSSAVRNPGLPIIAMTAGAMRGDQEQCLDAGMNDYVSKPVSP 1367

Query: 838  EQLYREVSRFFP 849
              L   ++R+ P
Sbjct: 1368 AILAEVLARWLP 1379


>gi|428214525|ref|YP_007087669.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
 gi|428002906|gb|AFY83749.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
          Length = 1970

 Score =  266 bits (680), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 189/636 (29%), Positives = 310/636 (48%), Gaps = 88/636 (13%)

Query: 236  IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 295
            I  V  + + +++ +++A  A   KSQFLA +SHEIRTPMNGVLGM ++L+ T+L   QQ
Sbjct: 1273 IVMVSSEINELVKAREQALEAARLKSQFLANMSHEIRTPMNGVLGMTELLLRTQLTEQQQ 1332

Query: 296  DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 355
            D+V+T + SG+ L++LI+++LD +K+E+G++ L+   F+L   L+D + LF+  +  K +
Sbjct: 1333 DFVKTLKISGENLLTLIDDILDFSKLEAGEMRLDHHEFDLNRTLEDTVDLFTLSAASKEI 1392

Query: 356  ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415
            ELA  ++  VP  L GD  R RQI+TNL+GN+IKFTE+G + +TV   +           
Sbjct: 1393 ELAFLVALDVPRYLKGDASRLRQILTNLLGNAIKFTERGEVVITVNRAD----------- 1441

Query: 416  LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 475
             S+ + +L     A R                          ++L  SV D+G GI    
Sbjct: 1442 -STPEQSLEAPDGAAR--------------------------LSLTFSVRDSGIGIGPSD 1474

Query: 476  QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535
              ++F  F QV  S +R +GGTG+GL+I K L   M GEIG  S   +GS F FT  F  
Sbjct: 1475 CKKLFQSFSQVDTSTTRKYGGTGLGLAICKQLTQLMGGEIGVESQLGVGSIFWFTVQFER 1534

Query: 536  GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 595
              +        Q ++  ++  S  +G K L+VD  PI  +V R      G++V    D L
Sbjct: 1535 VETIPPNLGFTQPSSL-DAAGSILRGKKLLIVDDSPINRQVVRQQASHWGMEVSEAEDGL 1593

Query: 596  QC---LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 652
            +    L +  S      + L++ ++ + D  +    +  L        +   ++  SI+ 
Sbjct: 1594 EAIKLLRKAVSTGNPFTLALLDMQMPKMDGEI----LGQLILTDPLLATTSLIMMTSINE 1649

Query: 653  SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV-GNKGNI---------------RNW 696
            S        +   + ++KP++ + L   L R +   G +G+                 NW
Sbjct: 1650 SYQARKFLDLGFSAYLIKPIKEARLLECLIRGISSDGYEGSSLSAAESGVAASAVPGNNW 1709

Query: 697  ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 756
            E   +          IL+V+D  +N KV    L+  G    C   G++A +  M   +++
Sbjct: 1710 EPEEIK------ALNILLVEDTRINQKVVLNQLESLGFEADCANNGQEALD-KMQVKEYN 1762

Query: 757  ACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 816
              FMD QMP +DG++AT+ IR  E +     RR              H+ ++ +TA  ++
Sbjct: 1763 LVFMDCQMPVLDGYDATRAIRHREGD-----RR--------------HMVVIGLTAYAME 1803

Query: 817  ATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
               ++CL +GMD Y++KP   + L R + ++  P P
Sbjct: 1804 GDRQKCLAAGMDDYLTKPVSVKDLQRAIRQWTHPSP 1839


>gi|333907033|ref|YP_004480619.1| multi-sensor hybrid histidine kinase [Marinomonas posidonica
           IVIA-Po-181]
 gi|333477039|gb|AEF53700.1| multi-sensor hybrid histidine kinase [Marinomonas posidonica
           IVIA-Po-181]
          Length = 1222

 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 183/618 (29%), Positives = 302/618 (48%), Gaps = 75/618 (12%)

Query: 238 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +V++  + +   +++AE A+  KS FL+ +SHEIRTPMN +LGM  + +  EL+  Q++Y
Sbjct: 448 QVDQQTNDIEHARQEAELANKMKSDFLSNMSHEIRTPMNAILGMSHLALQGELNRKQRNY 507

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           V     S ++L+ +IN++LD +K+E+GK+ELE   FNL  +L  + +L S K++D+ +EL
Sbjct: 508 VEKVHRSAESLLGIINDILDFSKIEAGKMELEQTDFNLEDVLIHLSNLLSLKAEDQELEL 567

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
              I++ VP TLIGDP R  QI+TNL  N++KFTE+G + +                   
Sbjct: 568 LFDIAEDVPLTLIGDPIRLGQILTNLGNNALKFTEEGEVVI------------------- 608

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                          H+ K  K +N D           + + L  SV+DTG G+  E Q 
Sbjct: 609 ---------------HA-KVLKRWNDD--------EHKEWVQLQFSVQDTGIGMTPEQQQ 644

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           R+F  + Q   S +R +GGTG+GLSISK L   M+G+I   S    GS F FT       
Sbjct: 645 RLFKTYSQADSSTTRKYGGTGLGLSISKNLTELMEGQIWVESEQGSGSCFKFTI----NI 700

Query: 538 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
             + E   + + N     +S  QG +ALVVD R    ++    +QR G+  +   +  + 
Sbjct: 701 MVNQEEPEKSIEN-----ASVLQGKRALVVDDRNSAREILLSILQRFGLSTDSAKNGKEA 755

Query: 598 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 657
           L++I    K      +    W+         +   + +    Q K  L+  ++     + 
Sbjct: 756 LTKIMEADKQNAPYQIVFMDWKMPIMNGLDCIRTFQSIPLSIQPKTILIT-AVGKDELDD 814

Query: 658 STDGVSIPSVIMKPLRSSMLAASLQRAMG--VGNKGNIRNWELPSMSLRHLLLGRKILIV 715
               +++   I KP+ +S+L   +  A G  +  KG           +   L G+ IL+V
Sbjct: 815 QIKDLNLHGAITKPVNASILLNLVMSAFGHQLSYKGRRVKRRDSERQIAQQLAGKHILLV 874

Query: 716 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI 775
           +DN +N ++A+  L      V     G++A +LL     FD   MD+QMP MDG+ AT  
Sbjct: 875 EDNEINQELASDLLTDVKINVTVANHGQEALDLLNSSQAFDCVLMDVQMPIMDGYTATHE 934

Query: 776 IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
           IR++   F+N                   +PI+AMTA+ ++   +  L SGM+ +++KP 
Sbjct: 935 IRKLPR-FSN-------------------LPIIAMTANAMKEDLDAALDSGMNAHLTKPI 974

Query: 836 EAEQLYREVSRFFPPIPD 853
           +  ++Y+ ++ +     D
Sbjct: 975 QVAEMYKTLAHWMKTDSD 992


>gi|288942572|ref|YP_003444812.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288897944|gb|ADC63780.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1705

 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 184/636 (28%), Positives = 307/636 (48%), Gaps = 98/636 (15%)

Query: 224  LVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 283
            L G +   +  + A+VE     ++  K+ AE A  AKS FLA +SHEIRTPMN ++G+  
Sbjct: 940  LAGTVIDISDRKAAEVE-----LLAAKELAEEATQAKSSFLANMSHEIRTPMNAIIGLSH 994

Query: 284  MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 343
            + + TELD  Q++Y+     S ++L+ +IN++LD +K+E+GKL++E ++F L  ++D++ 
Sbjct: 995  LALQTELDARQRNYIEKVHRSAESLLGIINDILDFSKIEAGKLDIEHIAFRLEDVMDNLA 1054

Query: 344  SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYL 402
            +L   K+++KGVEL   +   VP  L+GDP R  QI+ NL  N++KFTE G  I ++V +
Sbjct: 1055 NLVGLKAEEKGVELMFDLPPEVPTALVGDPLRLGQILINLGNNAVKFTEPGGEILISVRV 1114

Query: 403  VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIV 462
            +++                                                 AD + L  
Sbjct: 1115 MDQ------------------------------------------------GADWVRLGF 1126

Query: 463  SVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 522
            SV DTG G+  E Q+R+F PF Q   S +R +GGTG+GL+IS  L   M GEI   S P 
Sbjct: 1127 SVCDTGIGMSAEQQARLFEPFSQADMSTTRKYGGTGLGLTISTRLTELMGGEIRVESAPG 1186

Query: 523  IGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 582
             GSTF F    G  S   +E         P  ++ E   ++ LVVD      ++    + 
Sbjct: 1187 AGSTFGFDVRLGQQSGVVSE---------PARLTLEALSLRILVVDDNATAREILTQMLL 1237

Query: 583  RLGIQVEVVSDQLQCLSQIASGSKI--INMILVEQEVWEKDTSVSTLFVNNLRKLGCG-- 638
              G  VE  +   + L ++    ++   +++L++ ++ E D       +  +R+L C   
Sbjct: 1238 AFGFAVESAASGREALDRLRVVDRLEPFDLVLMDWKMPEMDG------IETIRRL-CAQT 1290

Query: 639  --FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV--GNKGNIR 694
               Q+   ++  +     A+     + +   + KP+ SS L  ++  A+G   G    + 
Sbjct: 1291 EITQAPALIMVTAYGHEAAHQVAVELGVSGFLTKPVTSSNLLDAIMHAVGRRGGQFTRMP 1350

Query: 695  NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
            N +  S      L G  +L+V+DN +N ++A   L   G +V     G++A E L    +
Sbjct: 1351 NRQEESSEAIAGLRGAHVLLVEDNELNQELALELLVSNGLSVEIAANGREALERLAGESR 1410

Query: 755  FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
            FD   MD QMP MDG+ AT+ IRE                          +P++AMTA+V
Sbjct: 1411 FDGVLMDCQMPVMDGYTATRAIREQPELAG--------------------LPVIAMTANV 1450

Query: 815  IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
            +    E+ L +GM+ ++ KP    +++  ++++  P
Sbjct: 1451 MSGDREKALAAGMNDHIGKPINVREMFATLAKWIRP 1486


>gi|332532631|ref|ZP_08408507.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037847|gb|EGI74296.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 924

 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 193/630 (30%), Positives = 302/630 (47%), Gaps = 95/630 (15%)

Query: 227 HIFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 283
           +I QAT +    +E+     +EL   KK+A+ A+  KS FLA +SHE+RTP+NGV+G   
Sbjct: 254 NIDQATSDYRETLEQYETSNIELSFAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTR 313

Query: 284 MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 343
            L  T L+  Q+DY+ T   S  +L+++I+++LD +K+E+G +ELE++ F LR  +++V+
Sbjct: 314 QLYKTPLNKHQKDYLDTIMLSANSLMTIISDILDFSKLEAGAMELESIQFQLRDAVNEVM 373

Query: 344 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 403
           +L +  + DK +EL++YI+ +VP+ L GDP RF+Q++ NL+ N+IKFTEKG I V +   
Sbjct: 374 TLLAPSAHDKQLELSIYINQQVPDDLTGDPTRFKQVLINLLSNAIKFTEKGSIKVDI--- 430

Query: 404 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 463
                                 + + D             D  TS           L+VS
Sbjct: 431 ---------------------SHRLLD-------------DERTS-----------LLVS 445

Query: 464 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 523
           V DTG GIP++ Q  +FTPF Q   SI+R  GGTG+GL I+K++V  M G I   S P  
Sbjct: 446 VTDTGVGIPMDKQDSLFTPFGQADSSITRKFGGTGLGLIITKHIVEAMSGRITLNSAPGN 505

Query: 524 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 583
           G+ FTF +VF          N    N+ P   +    G + L ++P           + +
Sbjct: 506 GTCFTFNSVFSLP-------NHVFTNDLP---TKSLIGKRILYLEPHEHTHHAVLSLLTQ 555

Query: 584 LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 643
               V    ++   L  I +     ++ L+       D      +V  +R+        L
Sbjct: 556 WESNVTACFNETSFLDAIKNTEHKYDVCLIGHMASVDDMQQLKSYVKAVRE----STDYL 611

Query: 644 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN-KGNIRNWELPSMS 702
           +L+ N++S +       G    + + KPL    L   L     + +   NI   +     
Sbjct: 612 YLMLNTVSHNMREAFI-GSGADACLSKPLNHRKLCEVLAAPYRLDHPTHNIEQND----- 665

Query: 703 LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 762
               LL  K+L+VDDN+ NLK+    L      +     G +A   L   H++D  FMDI
Sbjct: 666 --QALLPLKVLVVDDNDANLKLLHTLLSEQIEVIETAHNGSQAYS-LSKSHKYDIIFMDI 722

Query: 763 QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 822
           QMP MDG  A K+I+E   N +                     PI+A+TA  +Q+  E+ 
Sbjct: 723 QMPIMDGITACKLIQESSLNED--------------------TPIIAVTAHALQSEKEQL 762

Query: 823 LRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
           L+ G  GY++KP + + L + +S   P  P
Sbjct: 763 LKDGFKGYLTKPIDEDMLKQIISDHSPQTP 792


>gi|359441595|ref|ZP_09231486.1| two-component system, NarL family, sensor histidine kinase BarA
           [Pseudoalteromonas sp. BSi20429]
 gi|392533278|ref|ZP_10280415.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas arctica A
           37-1-2]
 gi|358036519|dbj|GAA67735.1| two-component system, NarL family, sensor histidine kinase BarA
           [Pseudoalteromonas sp. BSi20429]
          Length = 924

 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 193/630 (30%), Positives = 302/630 (47%), Gaps = 95/630 (15%)

Query: 227 HIFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 283
           +I QAT +    +E+     +EL   KK+A+ A+  KS FLA +SHE+RTP+NGV+G   
Sbjct: 254 NIDQATSDYRETLEQYETSNIELSFAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTR 313

Query: 284 MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 343
            L  T L+  Q+DY+ T   S  +L+++I+++LD +K+E+G +ELE++ F LR  +++V+
Sbjct: 314 QLYKTPLNKHQKDYLDTIMLSANSLMTIISDILDFSKLEAGAMELESIQFQLRDAVNEVM 373

Query: 344 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 403
           +L +  + DK +EL++YI+ +VP+ L GDP RF+Q++ NL+ N+IKFTEKG I V +   
Sbjct: 374 TLLAPSAHDKQLELSIYINQQVPDDLTGDPTRFKQVLINLLSNAIKFTEKGSIKVDI--- 430

Query: 404 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 463
                                 + + D             D  TS           L+VS
Sbjct: 431 ---------------------SHRLLD-------------DERTS-----------LLVS 445

Query: 464 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 523
           V DTG GIP++ Q  +FTPF Q   SI+R  GGTG+GL I+K++V  M G I   S P  
Sbjct: 446 VTDTGVGIPMDKQDSLFTPFGQADSSITRKFGGTGLGLIITKHIVEAMNGRITLNSAPGN 505

Query: 524 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 583
           G+ FTF +VF          N    N+ P   +    G + L ++P           + +
Sbjct: 506 GTCFTFNSVFSLP-------NHVFTNDLP---TKSLIGKRILYLEPHEHTHHAVLSLLTQ 555

Query: 584 LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 643
               V    ++   L  I +     ++ L+       D      +V  +R+        L
Sbjct: 556 WESSVTACFNETSFLDAIKNTEHKYDVCLIGHMASVDDMQQLKSYVKAVRE----STDYL 611

Query: 644 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN-KGNIRNWELPSMS 702
           +L+ N++S +       G    + + KPL    L   L     + +   NI   +     
Sbjct: 612 YLMLNTVSHNMREAFI-GSGADACLSKPLNHRKLCEVLAAPYRLDHPTHNIEQND----- 665

Query: 703 LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 762
               LL  K+L+VDDN+ NLK+    L      +     G +A   L   H++D  FMDI
Sbjct: 666 --QALLPLKVLVVDDNDANLKLLHTLLSEQIEVIETAHNGSQAYS-LSKSHKYDIIFMDI 722

Query: 763 QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 822
           QMP MDG  A K+I+E   N +                     PI+A+TA  +Q+  E+ 
Sbjct: 723 QMPIMDGITACKLIQESSLNED--------------------TPIIAVTAHALQSEKEQL 762

Query: 823 LRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
           L+ G  GY++KP + + L + +S   P  P
Sbjct: 763 LKDGFKGYLTKPIDEDMLKQIISDHSPQTP 792


>gi|158339052|ref|YP_001520229.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
 gi|158309293|gb|ABW30910.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
          Length = 1564

 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 200/650 (30%), Positives = 321/650 (49%), Gaps = 91/650 (14%)

Query: 211  AISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHE 270
            A++  +GI   A   GH+ +    +   + ++   + + +K A+AA+VAKS+FLAT+SHE
Sbjct: 984  AVAGQVGI---ALAHGHLLEQEQQQRQTLTQNNTALKQARKDADAANVAKSEFLATMSHE 1040

Query: 271  IRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEA 330
            IRTPMN V+GM  +L++T LD  Q+D+V T ++SG AL++LIN++LD +K+E+GKLE E 
Sbjct: 1041 IRTPMNAVIGMTGLLLNTTLDNQQRDFVETIRSSGDALLTLINDILDFSKIEAGKLEFEE 1100

Query: 331  VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKF 390
              F+LRA +++ L L + ++ DK +ELA       P  ++GD  R RQI+ NL+ N +KF
Sbjct: 1101 QPFSLRACIEESLRLVAPRAIDKQLELAYLFDPSTPNHIVGDVTRLRQILVNLLTNGVKF 1160

Query: 391  TEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPF 450
            TE+G +   V  V+++ D+   + E +S +               K F           F
Sbjct: 1161 TEQGEV---VIYVQDITDTDITQPETTSQR---------------KNFTDIQNQRRLIQF 1202

Query: 451  KSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGR 510
            +            V D+G GIP +   R+F  F QV  S ++ +GGTG+GL+I + L   
Sbjct: 1203 E------------VRDSGIGIPADRMDRLFKSFSQVDASTTKKYGGTGLGLAICRSLSQM 1250

Query: 511  MKGEIGFVSIPNIGSTFTFT---AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVV 567
            M G I   S   +GS+F FT    V   G +T ++  SQQ+            G + LVV
Sbjct: 1251 MGGRIWVESKAGVGSSFFFTIAVPVAPEGENTLDQ--SQQL----------LDGKQLLVV 1298

Query: 568  DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL 627
            D  P   ++     Q  G+ ++ VS   + L+ + S SK  ++ +++ ++ E D      
Sbjct: 1299 DDNPTNRRILTLQAQTWGMGIQTVSGGAEALALLESDSK-FDLAILDMQMPEMD---GVE 1354

Query: 628  FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL------ 681
               ++R+L       L +L+ S+           +   +++ KP++ S L  +L      
Sbjct: 1355 LARHIRQLDQRKHLPLVMLS-SLGQDEIIKHKQEIQFSAILNKPIQQSYLYDALAEIFEG 1413

Query: 682  QRAM---GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVC 738
            QR      V +  N      PS+         +IL+ +D  VN KVA   LK+ G     
Sbjct: 1414 QRVQVKPTVPSPVNTEEQGDPSL---------QILLAEDIVVNQKVALLILKQLGYRADV 1464

Query: 739  VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYE 798
               G++  E L     +D   MD+QMPEMDG  A + I E          + +   + Y 
Sbjct: 1465 ANNGEEVLEALH-RQSYDVVLMDVQMPEMDGLTAARHITE----------QWQEEEQPY- 1512

Query: 799  NVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
                    I+A+TA+ +Q   E C+ +GM  YVSKP   ++L     R+F
Sbjct: 1513 --------IIALTANAMQGDREMCMAAGMHDYVSKPIRVDELKSAFERYF 1554


>gi|332709992|ref|ZP_08429948.1| PAS domain S-box protein [Moorea producens 3L]
 gi|332351363|gb|EGJ30947.1| PAS domain S-box protein [Moorea producens 3L]
          Length = 1738

 Score =  266 bits (679), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 210/708 (29%), Positives = 334/708 (47%), Gaps = 122/708 (17%)

Query: 209  LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 268
            L A++  +GI +  +   H+ +    +  ++ E    + + ++ AEAA  AKS+FLAT+S
Sbjct: 944  LEAVADQVGIAIAQA---HLLEQETRQREQLTEQNFALEQARRTAEAATQAKSEFLATMS 1000

Query: 269  HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 328
            HEIRTPMN V+GM  +L+DT+L   Q+D+V T + SG +L+++IN++LD +K+ESGKLEL
Sbjct: 1001 HEIRTPMNAVIGMTGLLLDTDLTSQQRDFVETIRNSGDSLLTIINDILDFSKIESGKLEL 1060

Query: 329  EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 388
            E   FNL   +++ L L + K+ +K +ELA       P  ++GD  R RQI+ NL+GN+I
Sbjct: 1061 EEQPFNLITCIEESLDLLAAKAAEKKLELAYLFHPNTPPMIVGDVTRLRQILVNLLGNAI 1120

Query: 389  KFTEKGHIFVTVYLVE----EVVDSIEVETELSSSKNTLSGYPVADRC----HSWKGFKT 440
            KFT  G + V+V   E    E+VD    ETE S++ N    YP+A       H    F T
Sbjct: 1121 KFTHIGEVLVSVTARELSIGELVDG--KETEHSNTAN--YSYPLASAPDYGKHYSLSFPT 1176

Query: 441  ------------FNQDG----------------------------------STSPFKSSS 454
                        F+Q G                                   T+ F+S+S
Sbjct: 1177 LANGKDYTLQGGFDQTGYINGVRGAKGTQNNTRDNTRVFSPPHPQISSRNPHTARFRSAS 1236

Query: 455  --ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 512
              + +  +   V+DTG GIP +   R+F  F QV  S SR +GGTG+GL+I + L   M 
Sbjct: 1237 TQSSIYEIQFVVKDTGIGIPEDRIDRLFQSFSQVDSSTSRQYGGTGLGLAICQRLTTMMG 1296

Query: 513  GEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE--------FQGMKA 564
            G+I   S    GS F FT                 +  QP+ +            +G + 
Sbjct: 1297 GKIWVESQVGQGSKFYFTV----------------LAKQPDPIEEPKLPVSQPLLEGKRL 1340

Query: 565  LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSV 624
            L+VD       +     +  G+  +  +   + L  ++ G K  ++ +++  + E D   
Sbjct: 1341 LIVDDSATNRTIISEQAKSWGMLTQTAASGREALDWLSQGDK-FDIAILDGYMPEMD--- 1396

Query: 625  STLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 684
                   +R+   G Q+   ++ +S++ S        + I +V+ KP++ S L   L + 
Sbjct: 1397 GFTLATKIRQQSEG-QALPLVMLSSMNQSDTKHHQSQLDIAAVLNKPIKQSQLHDVLTQV 1455

Query: 685  MGVGNKGNIRNWELPSMSL------RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVC 738
            M  G    I+      + L      +H L   +IL+ +DN VN ++A   LKR G     
Sbjct: 1456 MS-GQPIKIKRTPAQHLKLDTEMAQKHPL---RILLAEDNIVNQQLALQLLKRMGYRADV 1511

Query: 739  VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYE 798
               G +  + L     +D   MD+QMPEMDG  AT+ I E                   +
Sbjct: 1512 AGNGLEVLQAL-SRQPYDLVLMDVQMPEMDGLTATQRICE-------------------Q 1551

Query: 799  NVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
              ++    I+AMTA+ ++   E CL +GMD Y+SKP +  +L R +S+
Sbjct: 1552 WPAHLRPWIIAMTANAMEGDREMCLSAGMDDYISKPIQVPELVRALSQ 1599


>gi|144898719|emb|CAM75583.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1067

 Score =  266 bits (679), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 190/618 (30%), Positives = 298/618 (48%), Gaps = 99/618 (16%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           + E  ++AEAA+ AKS+FLAT+SHEIRTPMNG++GM  +L+DT+L   Q  +  T + S 
Sbjct: 395 LKEAVERAEAANRAKSEFLATMSHEIRTPMNGIIGMTGLLLDTQLTREQMHFANTVRTSA 454

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
           +AL+S+IN++LD +K+E+G+LE E   F +R +++ V+ + + + + + VEL   +    
Sbjct: 455 EALLSIINDILDFSKMEAGRLEFEYGPFEIRPLIEGVVDILAPRVKGRNVELTYVVPPSA 514

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
                GD GR RQ++ NL GN+IKFTE G + +           I  ETE          
Sbjct: 515 RGVFYGDAGRLRQVLLNLAGNAIKFTEIGSVHI----------GIRAETEFD-------- 556

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                         D++ L + V DTG GI   A+SR+FT F Q
Sbjct: 557 ------------------------------DMVRLRIEVVDTGIGISDNAKSRLFTMFTQ 586

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
              S +R  GGTG+GL+IS+ +V  M GEIGF S    GSTF F          S+E  S
Sbjct: 587 ADSSTARRFGGTGLGLAISRRIVDMMGGEIGFDSTEGQGSTFWFQVSL----RRSDEQTS 642

Query: 546 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV---SDQLQCLSQIA 602
                    V +  +G + LVVD      +V ++ ++  G QV++V   +  L  + Q  
Sbjct: 643 DI------EVINPLEGARILVVDDNATNREVFQHQLENWGAQVDLVDGAAGGLMAIRQAQ 696

Query: 603 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
             +    ++L++  +      +S L +  + +          +LA+S + S        +
Sbjct: 697 HSAHPYQLVLLDHHM----PGMSGLDLAAVVRADPTTADLKLVLASSANPSDFRQLNASL 752

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL-------LGRKILIV 715
            +  V+ KP+R S L   L   +G       R+  LP  +    L       L  +IL+V
Sbjct: 753 RLDDVLSKPVRQSALLDCLMSRLG-------RSQALPQQTTLSALSDLPAPALALRILVV 805

Query: 716 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI 775
           +DN +N +VA   L + G      + G +A  L+     +D   MD+QMP MDG  AT I
Sbjct: 806 EDNPINQQVAVGLLAKLGHRADVADDGAEAVALV-ERGDYDLILMDMQMPRMDGLTATGI 864

Query: 776 IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
           IR +         +GEV+             I+AMTA+ ++   + CL +GM+ Y++KP 
Sbjct: 865 IRRLPAG------KGEVT-------------IIAMTANAMEGDRDACLAAGMNDYLAKPI 905

Query: 836 EAEQLYREVSRFFPPIPD 853
           +  +L   + R+   I D
Sbjct: 906 DRHRLAAVLQRWIDHIID 923


>gi|392549115|ref|ZP_10296252.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas rubra ATCC
           29570]
          Length = 925

 Score =  266 bits (679), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 187/634 (29%), Positives = 306/634 (48%), Gaps = 104/634 (16%)

Query: 227 HIFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 283
           HI QAT +    +E+     ++L   KK+A+ A+  KS FLA +SHE+RTP+NGV+G   
Sbjct: 253 HIDQATCDYRETLEQYETQNIQLNIAKKEAQVANRVKSDFLAKMSHELRTPLNGVIGFTR 312

Query: 284 MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 343
            L  T L+  Q+DY+ T + S  +L+++I+++LD +K+E+G +ELE++ F LR  +++V+
Sbjct: 313 QLYKTPLNKHQKDYLDTIELSANSLLTIISDILDFSKLEAGAMELESIQFQLRDAVNEVM 372

Query: 344 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 403
           +L +  + +K +EL++ I+ +VP+ L+GDP RF+Q++ NL+ N++KFTEKG + V     
Sbjct: 373 TLLAPSAYEKQLELSIAINRQVPDNLVGDPTRFKQVLINLISNAVKFTEKGSVKV----- 427

Query: 404 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 463
                                     D  H  KG      D  TS           L++S
Sbjct: 428 --------------------------DISHRLKG------DSQTS-----------LLIS 444

Query: 464 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 523
           V DTG GI  E Q  +FTPF Q   SI+R  GGTG+GL I+K++V  M G I   S P  
Sbjct: 445 VSDTGLGIAQEKQDTLFTPFAQADSSITRKFGGTGLGLIITKHIVEAMSGRITLNSAPGN 504

Query: 524 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 583
           GS FTF A+F   S   ++     +  +P       +  + L  +P+       +  ++ 
Sbjct: 505 GSCFTFNAIFNLPSRLFDD----DLPTKP------LENKRVLYFEPQEHTRNAVQAQLED 554

Query: 584 LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 643
             +QV    ++    + +    +  ++ L+       D      ++   R++       L
Sbjct: 555 WAMQVTCCKNEDTFFAALEQEFR-YDICLIGNMATVDDMQTVKAYITQAREMA----DYL 609

Query: 644 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS- 702
           +L+ N+IS +    S  G    + I KP+    L   L     + +         PS+S 
Sbjct: 610 YLMVNTISHN-MRESLIGSGADACISKPMHHRKLCDMLAAPYRLDH---------PSVSI 659

Query: 703 ----LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
               L HL L  K++I DDN+ NLK+    L+     +     G +A  L     ++D  
Sbjct: 660 DDTDLAHLPL--KVMIADDNDANLKLLYTLLEEQVDTIDTAHNGAQAVSLC-KSQKYDLI 716

Query: 759 FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
           FMDIQMP MDG  A + I+E   N +                     PI+A+TA  +   
Sbjct: 717 FMDIQMPIMDGITACRTIKESSLNDD--------------------TPIIAVTAHALTGE 756

Query: 819 YEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
            E+ ++ G +GY++KP + + L + +    P +P
Sbjct: 757 KEQLIKDGFNGYMTKPIDEDMLRQIICDHSPSLP 790


>gi|344941765|ref|ZP_08781053.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|344262957|gb|EGW23228.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 1247

 Score =  266 bits (679), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 188/606 (31%), Positives = 301/606 (49%), Gaps = 73/606 (12%)

Query: 260  KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
            K++FLA +SHEIRTPMNGVLGMLD+L DT+L   Q D +  A  S ++L+++IN++LD +
Sbjct: 533  KTEFLANMSHEIRTPMNGVLGMLDLLQDTQLSREQWDLIDIAANSAESLLTIINDILDFS 592

Query: 320  KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
            K+E+GK+ELE + FNL  ++++V +L S ++  KG+EL  ++   +P    GDP R RQ+
Sbjct: 593  KLEAGKIELEQIEFNLPDLVEEVCTLLSSRAHSKGLELNCFLPTDLPLRWQGDPTRIRQV 652

Query: 380  ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
            +TNL+GN++KFTE+G + VTV +                                    K
Sbjct: 653  LTNLIGNAVKFTEQGEVSVTVRVS-----------------------------------K 677

Query: 440  TFNQDGSTSP--FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 497
              + D +++P  F + +  L  L   V DTG GI  EAQ+R+F  F Q   S SR +GGT
Sbjct: 678  KDDTDAASAPGRFAADTPSLTILRFEVVDTGIGITAEAQARLFQAFSQADSSTSRRYGGT 737

Query: 498  GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS 557
            G+GLSISK LV  M G IG  S    G+ F FT      ++  NE  + Q N        
Sbjct: 738  GLGLSISKDLVMLMNGNIGVESALGQGANFWFTLPL---AAVDNEAPAPQAN-------- 786

Query: 558  EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---SKIINMILVE 614
             F   + L+VD       +  +++   G  +    +    L ++ +    ++  +++L +
Sbjct: 787  -FCDKRVLIVDDNATNRMILTHYLSNWGFTLSEADNGPAALDELEAAVLRNEPYDLLLSD 845

Query: 615  QEVWEKDT-SVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLR 673
             ++   D  +++   + N          ++ L + SI S     ++        ++KP+R
Sbjct: 846  MQMPGMDGFALARAIIEN---PAIADTPRILLSSGSIGSQVERLAS---GFTQSLLKPVR 899

Query: 674  SSMLAASLQRAMGV-GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRY 732
             S L  ++  A+ + G K      E   + L +    +++L+V+DN VN KV  + L ++
Sbjct: 900  QSQLFDAVIDALQLPGQKNAPVEKEKKEVLLDY--SSKRVLVVEDNKVNQKVILSQLAKF 957

Query: 733  GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 792
                     G+ A + L     +D  FMD QMP MDG+EAT+I+RE E            
Sbjct: 958  QLKPDLANNGQVALDQL-ERQAYDLVFMDCQMPIMDGYEATRILRERE--------IAGA 1008

Query: 793  SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF--PP 850
              E           ++A+TA       E+CL +GMD Y+SKP     L   ++R+   P 
Sbjct: 1009 CPEHGRGSGKLRTSVIALTAHASAGEREKCLSAGMDDYLSKPASRSDLAVVLARWLGEPS 1068

Query: 851  IPDRSP 856
             P+ +P
Sbjct: 1069 APEVAP 1074


>gi|218886197|ref|YP_002435518.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218757151|gb|ACL08050.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1548

 Score =  266 bits (679), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 188/606 (31%), Positives = 294/606 (48%), Gaps = 93/606 (15%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K+ AE A   KS FLA +SHEIRTPMN ++GM  + + TELD  Q DYVR  +ASG+ L+
Sbjct: 738  KEMAEEATRLKSDFLANMSHEIRTPMNAIIGMAHLALKTELDPRQADYVRKIRASGQHLL 797

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
             ++N++LD +K+E+GKL +E   F L  +LD V +L S K+  KG+E  + ++  VP  L
Sbjct: 798  GILNDILDFSKIEAGKLTVENTEFELETVLDTVANLVSEKAATKGLEFVLDVAANVPPVL 857

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GDP R  QI+ N   N++KFTE G I             I VET               
Sbjct: 858  RGDPLRLGQILINYANNAVKFTEHGEIV------------IHVET--------------- 890

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                 ++   D++ L  +V DTG G+  E ++R+F  F Q   S
Sbjct: 891  --------------------LETGDTDVL-LRFAVRDTGIGLTDEQKARLFVSFQQADTS 929

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+I+K L   M G +G  S+P  GSTF FTA  G GS            
Sbjct: 930  TTRKYGGTGLGLAIAKKLADLMGGGVGVDSVPGGGSTFWFTARLGLGS-----------G 978

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD----QLQCLSQIASGS 605
             +      + +G++ LVVD  P +A++   H+        V++D     L  L +     
Sbjct: 979  RRALLPRIDLRGLRVLVVDDNP-QARMVLAHMLEGMTFRPVMADGGETALDLLREARDAD 1037

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
                M+ ++   W+           N+R L          +  +        +++GV + 
Sbjct: 1038 TPFGMVFLD---WQMPGMDGLETARNIRTLAPDLP---VAIVTAHGREEIFAASEGVGVS 1091

Query: 666  SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNVNLK 723
            +V++KP++ S+L  +  R +G  +         P      L  + G ++L+V+DN +N +
Sbjct: 1092 AVLVKPVQPSLLFDTAMRLLGAVHPAPRAAVPPPDTRPAMLDGVRGSRVLLVEDNELNRE 1151

Query: 724  VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
            VA   L   G      E G +A  ++M    +D   MD+QMP MDG+EAT+IIR      
Sbjct: 1152 VALGLLAEAGLVPDAAEDGAQAVRMVM-EGDYDLVLMDVQMPVMDGYEATRIIR------ 1204

Query: 784  NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
              R R  +             +PI+AMTA+ +++  E CL +GM+ +V+KP + ++L+  
Sbjct: 1205 --RSREAD------------SLPIVAMTANAMRSDREACLAAGMNDHVAKPIDPDELFAA 1250

Query: 844  VSRFFP 849
            + R+ P
Sbjct: 1251 LIRWLP 1256


>gi|406920330|gb|EKD58417.1| hypothetical protein ACD_56C00133G0001 [uncultured bacterium]
          Length = 846

 Score =  265 bits (678), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 199/640 (31%), Positives = 315/640 (49%), Gaps = 116/640 (18%)

Query: 236 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 295
           I K+E+    ++  ++ A  A  AKS FLAT+SHEIRTPMNG++GM D+++DT+LD  QQ
Sbjct: 190 ITKMEQMQGELIASQQAALCASQAKSDFLATMSHEIRTPMNGIIGMTDLVLDTDLDEQQQ 249

Query: 296 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 355
           DY+   ++S   L+++IN++LD +K+E+GKL LE++SFNL A+++ +L   + K+ +K +
Sbjct: 250 DYLNIVKSSANGLITIINDILDFSKMEAGKLSLESISFNLHALINSLLKPLAVKADEKRI 309

Query: 356 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415
           EL   I ++VP  + GDPGR RQI+ NL+GN++KFT+ G I                  E
Sbjct: 310 ELISNIDEKVPLRVQGDPGRIRQILINLLGNALKFTKTGEI------------------E 351

Query: 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 475
           L  S + +S                     S +P          L+ SV D+G GIP E 
Sbjct: 352 LKVSTHEIS---------------------SIAPC---------LLFSVRDSGIGIPEEK 381

Query: 476 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535
           Q  IF  F Q   S +R +GGTG+GLSI+  LV  M GEI   S P+ GSTF        
Sbjct: 382 QKSIFEAFTQADTSTTRHYGGTGLGLSITSRLVKLMGGEIWVESTPDNGSTF-------- 433

Query: 536 GSSTSNEHNSQQMNNQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEV 590
                  H S  +   P  + + F      G +AL++D   I  ++ R  + R G++VE 
Sbjct: 434 -------HISIPLITAPEQLPAVFDAKQIIGKRALIIDDNEINRRIFREMLTRWGLEVEE 486

Query: 591 VSDQLQCLSQIAS-GSKIINMILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQSKLFLLA 647
               L  L  +    S+  ++++V+  +   D    + TL  N    L     +K+ +L+
Sbjct: 487 EPSALALLENLEKRSSQAFDLLVVDYHMPGMDGFELIETLNRNQRFPL-----AKILMLS 541

Query: 648 NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR--------AMGVGNKGNIRNWELP 699
           ++     A T    + + + + KP+       +L +        A    ++ NI     P
Sbjct: 542 SAAMPGLA-TRCQNLGVSTYLTKPIDRYEFFKALNKLFVPDTASASPSSHQENIT----P 596

Query: 700 SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 759
           +   +++ +   IL+ +DN VN K+    L+  G  V   E G+ A E      +FD   
Sbjct: 597 A---KNIGIRLNILVAEDNEVNQKLICTLLENKGHQVTLAENGQIAFEQF-KASRFDIVL 652

Query: 760 MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH--VPILAMTADVIQA 817
           MD+QMP M G EA++ IR                  A+E+ S+     PI A+TA V+  
Sbjct: 653 MDMQMPVMGGLEASQHIR------------------AWEDASSRRQATPIYALTAAVLPE 694

Query: 818 TYEECLRSGMDGYVSKPFEAEQLYR---EVSRFFPPIPDR 854
              +   +G+DG+++KP   E LY+   +++   P  P R
Sbjct: 695 VRTKAEAAGIDGFLTKPINKEVLYKALDDIASLRPASPPR 734


>gi|127514128|ref|YP_001095325.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126639423|gb|ABO25066.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1768

 Score =  265 bits (678), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 190/614 (30%), Positives = 298/614 (48%), Gaps = 109/614 (17%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + + K  A+AA  AKS FLA +SHEIRTPMN ++GM  + + T LD  QQ+YV     + 
Sbjct: 1026 LTQAKDVADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTSLDKKQQNYVEKIDRAS 1085

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            K+L+ +IN++LD +K+E+GKL++EAV F L  +L+D+  +FS K+ DK +EL   ++  +
Sbjct: 1086 KSLLGIINDILDFSKIEAGKLDIEAVPFQLDTMLEDLSDMFSVKAADKQLELLFAVAPNI 1145

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV-YLVEEVVDSIEVETELSSSKNTLS 424
            P  L+GDP R  Q++ NLM N+IKFTE+G + +++  LV E              +  L 
Sbjct: 1146 PRHLVGDPLRLSQVLINLMNNAIKFTEQGEVMLSISQLVRE-------------DEEILL 1192

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
             + V D                                     G G+  E + ++F  F 
Sbjct: 1193 KFSVRD------------------------------------NGIGLTEEQRGKLFQSFS 1216

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   S +R +GGTG+GL+I K LV  M GEIG  S    GSTF F+  F           
Sbjct: 1217 QADSSTTRKYGGTGLGLAICKQLVELMGGEIGVESQFGNGSTFFFSVRF----------- 1265

Query: 545  SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS- 603
             +  +NQ   V+ E +GM+ LV D       + R  ++ +G  V+ V    + LS+    
Sbjct: 1266 -KVADNQLIKVAQELEGMRILVADDNATARDILRSTLESMGFTVDTVRSGAEALSRCQET 1324

Query: 604  --GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN----T 657
              G  +I+  + E +  E    + +   N  + L              I S+ A+     
Sbjct: 1325 DYGVALIDWRMPEMDGLETARRLLSERTNPPKTL--------------IVSAHADGDFID 1370

Query: 658  STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI---RNWELPSMSLRHLLLGRKILI 714
              +   I   I KP+ +S L   +  A+  G +G +   R     S +L   L G++IL+
Sbjct: 1371 KAEQAEISGYITKPISASRLLDGIMSAL--GKQGAMPVRRKGSEVSPALLAQLKGKRILL 1428

Query: 715  VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATK 774
            V+DN +N +VA+  L++ G  +   E G+ A E L     FD   MD QMP MDG++AT 
Sbjct: 1429 VEDNEMNQEVASEFLEQVGVILSIAENGQVALEKL-AMQSFDLVLMDCQMPVMDGYQATA 1487

Query: 775  IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
             +R          +R E++           +P++AMTA+ +    E CLR+GM+ +++KP
Sbjct: 1488 ELR----------KRPELA----------DLPVIAMTANAMAGDKEMCLRAGMNDHIAKP 1527

Query: 835  FEAEQLYREVSRFF 848
             E   LY+ +  + 
Sbjct: 1528 IEVSLLYKTLLEYL 1541


>gi|336126078|ref|YP_004578034.1| GacS/BarA family sensor protein [Vibrio anguillarum 775]
 gi|335343795|gb|AEH35077.1| GacS/BarA family sensor protein [Vibrio anguillarum 775]
          Length = 1320

 Score =  265 bits (678), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 188/615 (30%), Positives = 302/615 (49%), Gaps = 97/615 (15%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + E K+ A+A   AK  FLA +SHEIRTPMN +LGM  + ++TEL+ TQQ Y+     S 
Sbjct: 593  LREAKETADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTELNPTQQKYISRINESA 652

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            K L+ +IN++LD +K+E+GKL +E + F+L  +LD++ +L S K+Q+K +E  + I   +
Sbjct: 653  KNLLGIINDILDFSKIEAGKLNVEHIDFSLDEVLDNLTTLISLKAQEKNIEFLLDIDPHI 712

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  L+GDP R  Q++ NL GN++KFTE+G I V+  +V                      
Sbjct: 713  PVGLVGDPLRLGQVLVNLCGNAVKFTEQGEIIVSARVV---------------------- 750

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                             Q+ +           + L  +V DTG GI     + +F+ F Q
Sbjct: 751  ----------------GQNDAN----------VTLKFTVSDTGIGIAESNVATLFSAFSQ 784

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               SI+R +GGTG+GLSISK LVG M G+I   S    GSTF FT   G   +       
Sbjct: 785  ADNSITRQYGGTGLGLSISKQLVGLMGGDIQVHSEEGSGSTFEFTVECGLQEA------- 837

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
             +M +    +S+   G +ALVVD       +    +  +  + + VS+  + L +I +  
Sbjct: 838  -KMRDIAKPLSA-LAGKRALVVDDNDSARNILMTLLNAMHFEAKSVSNGFEALDEIRNTH 895

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTSTDGV 662
               +M+ ++   W          +  ++ LG    +K FL+      IS    N+     
Sbjct: 896  --FDMLFID---WNMPGMNGIELLQRMKPLGVFDNTKRFLVTAYGREISLVGENSKL--- 947

Query: 663  SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
             + ++I+KP+  S L  ++  + G+      ++ E      R   +G+K+L+V+DN VN 
Sbjct: 948  -VDALIVKPVNPSNLLDAIMDSYGIEQLR--QSHEYLDHDTRPTFIGQKVLLVEDNEVNQ 1004

Query: 723  KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
            +VA   L+    ++V    G++A   L     FD   MD+QMP MDG  ATK IR+ E  
Sbjct: 1005 EVAFGLLESTQLSIVLANNGQEALTTLQ-QEAFDLVLMDMQMPIMDGISATKEIRQHEEW 1063

Query: 783  FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                                  +PI+AMTA+ + +  E CL +GM+ +V+KP + ++LY+
Sbjct: 1064 KT--------------------LPIVAMTANAMSSDVEHCLNAGMNDHVAKPIDVQRLYQ 1103

Query: 843  EVSRFFP-----PIP 852
             + ++       P+P
Sbjct: 1104 VLRKYLKANETTPVP 1118


>gi|94971085|ref|YP_593133.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
            versatilis Ellin345]
 gi|94553135|gb|ABF43059.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
            versatilis Ellin345]
          Length = 1326

 Score =  265 bits (678), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 188/615 (30%), Positives = 293/615 (47%), Gaps = 87/615 (14%)

Query: 248  ELKKKAEAADVA---KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL++  EAA+ A   KS FLA +SHEIRTPMN ++GM  + + T L   Q+DY+   Q S
Sbjct: 571  ELRRAREAAEDATRTKSDFLANMSHEIRTPMNAIIGMSHLALKTNLSPQQRDYLNKIQIS 630

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
               L+ +IN++LD +K+E+GKL +E++ F+L  +L+ + +L   K+  KG+EL   IS  
Sbjct: 631  SHHLLGVINDILDFSKIEAGKLNVESIDFSLEKVLETLANLIGEKASAKGLELIFDISPD 690

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            VP  LIGDP R  QI+TN   N++KFTE G I +                          
Sbjct: 691  VPHNLIGDPLRLGQILTNYASNAVKFTEHGEIVI-------------------------- 724

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
            G  V +R                        D + L  +V DTG G+  E ++R+F  F 
Sbjct: 725  GAKVQERTD----------------------DEVLLYFAVRDTGLGLTAEQKARLFQSFQ 762

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   S +R HGGTG+GL+ISK L   M GE+G  S P  GSTF FTA  G G S ++++ 
Sbjct: 763  QADTSTTRKHGGTGLGLAISKQLSALMHGEVGVESEPGKGSTFWFTARMGIGQSKADKYL 822

Query: 545  SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
                        S+ +G + LVVD      KV    +  +  QV   +   + + Q+   
Sbjct: 823  P----------VSDLRGRRVLVVDDNESARKVLDEMLSSMTFQVTTANGGHEAIDQVRQA 872

Query: 605  SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
            ++  +   +    W             +R LG   +S   ++  +              I
Sbjct: 873  AQAESPYDIAFLDWRMPGMDGIETAKAIRGLGLE-RSPRMVMVTAYGREEVMRGAAEAGI 931

Query: 665  PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL-RHL--LLGRKILIVDDNNVN 721
              V++KP+ +S+L  ++   +G G++   R  E    ++  HL  L G  +L+ +DN  N
Sbjct: 932  EDVLIKPVGASLLFDTIMAVLG-GSRQEDRQSEGSDNAIAAHLADLKGAVVLLAEDNEFN 990

Query: 722  LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
             +VA   L   G  V     GK+A   L     +DA  MD+QMPEMDG  AT+ IR+ + 
Sbjct: 991  QQVATGLLNEVGVNVEIAGDGKQALARL-AERTYDAVLMDMQMPEMDGLAATREIRK-QA 1048

Query: 782  NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
             F +                   +PI+AMTA+ ++   E C+ +GM+ +++KP + + L+
Sbjct: 1049 RFKD-------------------LPIIAMTANAMEQDKERCIAAGMNDHIAKPIDPDHLF 1089

Query: 842  REVSRFFPPIPDRSP 856
              + ++  P    +P
Sbjct: 1090 NTLLKWIKPRSQAAP 1104


>gi|354724951|ref|ZP_09039166.1| hybrid sensory histidine kinase BarA [Enterobacter mori LMG 25706]
          Length = 919

 Score =  265 bits (678), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 197/623 (31%), Positives = 295/623 (47%), Gaps = 142/623 (22%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + +EL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRGTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I +   LVE+                        
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDI---LVEK------------------------ 435

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                ++ S + + + V + DTG GIP   QSR+F  F Q   S
Sbjct: 436 ---------------------RALSNNKVQIEVQIRDTGIGIPERDQSRLFQAFRQADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F          + + N   M 
Sbjct: 475 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWF--------HINLDLNPNVMT 526

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAK-----------------------VSRYHIQRLGI 586
           + P  V+   +GM+   V+P    A+                       V  Y I  +GI
Sbjct: 527 DGP--VTDCLKGMRLAYVEPNAAAAQCTLDVLSTTPLEVVYSPTFSALAVEHYDILLMGI 584

Query: 587 QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 646
            V   +D                 + ++QE   K  S++      L  L C  Q     L
Sbjct: 585 PVTFTAD-----------------LTMQQERLAKAASMTDYL---LLALPCHAQINAEEL 624

Query: 647 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL 706
            N           DG +  + ++KPL ++ L  +L     +          LP +S    
Sbjct: 625 KN-----------DGAA--ACLLKPLTATRLLPALTEYCRLSQHA------LPLVSDEQK 665

Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
           L    ++ VDDN  NLK+    L+     V     G +A E      QFD   MDIQMP 
Sbjct: 666 L-PMSVMAVDDNPANLKLIGVLLEDQVQHVELCTSGAQAVEQ-AKQMQFDLILMDIQMPG 723

Query: 767 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG 826
           MDG  A ++IR++ H                        P++A+TA  +    E+ L +G
Sbjct: 724 MDGIRACELIRQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLSAG 763

Query: 827 MDGYVSKPFEAEQLYREVSRFFP 849
           M+ Y++KP + E+L+  + R+ P
Sbjct: 764 MNDYLAKPIDEEKLHSLLVRYKP 786


>gi|27364942|ref|NP_760470.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus CMCP6]
 gi|27361088|gb|AAO09997.1| BarA sensory histidine kinase (= VarS = GacS) [Vibrio vulnificus
           CMCP6]
          Length = 928

 Score =  265 bits (677), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 224/750 (29%), Positives = 353/750 (47%), Gaps = 121/750 (16%)

Query: 118 ATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSD 177
           A P E   A  GY+    D+ SL      +L   Q +F     +       S++ S +  
Sbjct: 146 AEPGEATRAI-GYIAVELDLSSL------RLQQYQEVFSAFLVLILGLGLASVFASRLMQ 198

Query: 178 DGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQ 230
           D    ++ + N  D  R+ ++  R + K    L ++   I  + I+    H      I Q
Sbjct: 199 DVTQPITHMKNVVDRIRRGQLDVRIEGKMHGELDSLKNGINAMAISLSEYHVEMQHSIDQ 258

Query: 231 ATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 287
           AT +    +E+     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ 
Sbjct: 259 ATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLK 318

Query: 288 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 347
           T+L  +Q DY++T + S   L+++IN++LD +K+E+GKL LE + F+ R  L++V+SL +
Sbjct: 319 TQLTNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQA 378

Query: 348 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 407
             + +KG+E+ + I  R+PE ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +  +  
Sbjct: 379 TSAHEKGLEITLKIDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSG 438

Query: 408 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 467
           DSI+++            + V D                                    T
Sbjct: 439 DSIDLQ------------FMVKD------------------------------------T 450

Query: 468 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
           G GI    Q+++F  F Q   SISR +GGTG+GL I++ LV +M GEI   S  + GSTF
Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510

Query: 528 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF-QGMKALVVDPRPIRAKVSRYHIQRLGI 586
            FT            H++Q      +S+ +E+ QG + L+V+P    A V++  + + GI
Sbjct: 511 WFTLRL---------HSTQM--PMSDSIEAEYLQGKELLLVEPNMQAAAVTQQVLTQEGI 559

Query: 587 QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 646
            V   S     L   A G   + + L   +V+E +T      + N         +   L 
Sbjct: 560 NVTYRS----LLPDNAKGYDFVLLSLAVNQVYELET------IENWLSRALHISANTILA 609

Query: 647 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSL 703
             S   + A+  T+   I   + KPL    L  SL   Q    +         E  S+S 
Sbjct: 610 IPSTELALADQLTERFGI-QCLTKPLGRRKLLQSLAAKQTLQPLLPAPENAQAERSSLS- 667

Query: 704 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 763
                   +L VDDN  NLK+  A L     +V     G+ A + +    QFD  FMDIQ
Sbjct: 668 --------VLAVDDNPANLKLITALLAERVVSVTSCSSGQDAVD-IATSRQFDLIFMDIQ 718

Query: 764 MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 823
           MP+MDG  A K+I++ E N N                     P++A+TA  +    +  L
Sbjct: 719 MPKMDGVTACKLIKQTELNANT--------------------PVIAVTAHAMSGERDRLL 758

Query: 824 RSGMDGYVSKPFEAEQLYREVSRFFPPIPD 853
           ++GMD Y++KP E   L + +  + P   D
Sbjct: 759 KAGMDDYLTKPIEEHILQQVLIHWNPNTCD 788


>gi|392382751|ref|YP_005031948.1| two-component hybrid sensor and regulator [Azospirillum brasilense
            Sp245]
 gi|356877716|emb|CCC98562.1| two-component hybrid sensor and regulator [Azospirillum brasilense
            Sp245]
          Length = 1179

 Score =  265 bits (677), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 199/653 (30%), Positives = 308/653 (47%), Gaps = 98/653 (15%)

Query: 226  GHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 285
            G +F A    +++ +     + E K+KAEA   +K +FLAT+SHEIRTPMNGV+GM  +L
Sbjct: 442  GVLFAAFFRDMSERKRVERALTEAKEKAEAGQRSKMEFLATMSHEIRTPMNGVIGMAGLL 501

Query: 286  MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 345
             +T LD  Q+ Y  T + S ++L+++IN++LD +K+++G+L LE   F    +++ V+ L
Sbjct: 502  QETHLDEEQRGYADTIRDSAESLLTIINDILDFSKIDAGRLTLEVSDFEAVPLVESVVEL 561

Query: 346  FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 405
             + ++  KG+ELA Y+   +   L GDPGR RQI+ NL GN++KFT++G + + +     
Sbjct: 562  LAPRATAKGLELACYVPPALHGPLRGDPGRLRQILINLAGNAVKFTDQGSVTIVL----- 616

Query: 406  VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 465
               S+E +           G  +    H              +P        + +   V 
Sbjct: 617  ---SVEQDDAAGPDDRPEPGDSLVPAPHE-------------TP--------VTIRFEVR 652

Query: 466  DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 525
            DTG GI      R+FT F QV  S +R HGGTG+GL+I K L   M G IG  S+P  GS
Sbjct: 653  DTGIGIAAADHKRLFTMFSQVDGSSARRHGGTGLGLAICKRLAELMGGRIGVHSLPGEGS 712

Query: 526  TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
             F        G+ T      Q            + G + L+VD   +   +    +  +G
Sbjct: 713  VFWVVIPLWRGTPTDAASAPQ--------APGAWTGRRILLVDDLAVNRDLLARQLAAMG 764

Query: 586  IQVEVVSDQLQCLSQI----ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641
            ++ E  +     L+++    A+G      IL        D  +  L    L        +
Sbjct: 765  LETESAATGEDALNRLLRAHATGRSFDAAIL--------DHCMPGLTGPELAARIRAVPA 816

Query: 642  KLFLLANSISSSRANTSTDGVSIPSV-IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 700
               L     +S R   + +  ++  V I+KP+RS+ L  ++ R       G  R   +P+
Sbjct: 817  LADLPLALATSHRMGETEEEAAVVDVRIVKPIRSTALRTAVSRLFATRAPGAARPDAVPA 876

Query: 701  MSLRHL---------------------LLG---RKILIVDDNNVNLKVAAAGLKRYGAAV 736
             S   +                     L G   R+IL+ +DN VNL+V  A L+R G AV
Sbjct: 877  DSKLDVSPPPSPRSGGPSAVPTPPGAPLTGTARRRILVAEDNPVNLQVTLALLRRAGHAV 936

Query: 737  VCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSI 794
              V  G +A   +  +P   +D   MD+QMPEMDG  AT+ IR M          G ++ 
Sbjct: 937  DSVSNGLEAVNAVAALP---YDLVLMDVQMPEMDGLAATRAIRRM----------GGIAA 983

Query: 795  EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                      VPI+AMTA+V++     CL +GMD Y+ KP  A+QL + V+R+
Sbjct: 984  ---------RVPIVAMTANVMEGDQAICLAAGMDDYLPKPIVADQLLQTVARW 1027


>gi|152996044|ref|YP_001340879.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836968|gb|ABR70944.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1258

 Score =  265 bits (677), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 196/620 (31%), Positives = 297/620 (47%), Gaps = 99/620 (15%)

Query: 252  KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
            +A AA  AKS FLAT+SHEIRTP+NGVLGM ++L  T+L+  Q   +   + SG+ L+ L
Sbjct: 594  QAVAASKAKSDFLATMSHEIRTPLNGVLGMAELLSGTKLNPEQTTQLNVLKESGEGLLGL 653

Query: 312  INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
            IN++LD +K+E+G + +E V FNL   + DV+ L   ++ +KG++L V   +  P  L+G
Sbjct: 654  INDLLDFSKIEAGHISIERVDFNLEKAIYDVIRLLMMRADEKGIDLLVEYDEVCPRFLVG 713

Query: 372  DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
            D  R +QI+TNL+ N+IKFT  GH+ V+V   + +VD                       
Sbjct: 714  DVFRIKQILTNLISNAIKFTSIGHVLVSV---KGIVDK---------------------- 748

Query: 432  CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
             H                       ++++ +SV DTG GI  + Q  +FT F+Q   S +
Sbjct: 749  -HG----------------------MVSITISVADTGVGIADKVQPHLFTAFVQADSSTT 785

Query: 492  RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 551
            R  GGTG+GL+I+K L+G M G I   S  N+GSTFT T       + S        N  
Sbjct: 786  RKFGGTGLGLAITKQLIGLMNGNISLSSKLNVGSTFTVTFALPESHAMSYIETIVDEN-- 843

Query: 552  PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA---SGSKII 608
                     G K LV+D       + +  ++   I  +     +  LS+I    +     
Sbjct: 844  ------LLLGKKTLVIDDNETNLTILKNQLRSCDIYADAEISPVDALSRIEQSINDDSPY 897

Query: 609  NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS-SRANTSTDGVSIPSV 667
             +I+++  + E D     +    +R++       + L+ +S+   S+   ST GV++   
Sbjct: 898  QIIVLDYLMPELD---GLMLSKLIREVSGSLYQPIILMTSSVGRLSQDELSTAGVNMS-- 952

Query: 668  IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM------SLRHLLLGRK---ILIVDDN 718
            I+KP    M A +L++ +      N+   +LP         L+  L G K   +L+V+D 
Sbjct: 953  IVKP----MSALTLKKGLVSALSSNLLGHQLPCTEVSDEDELKDNLNGEKKGLVLVVEDM 1008

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
              NL VA   L R G  V+  E GK   E +   HQ D  FMD+ MP MDG  A + IR+
Sbjct: 1009 KANLAVAQGILTRMGFDVIAAENGKVGVE-MWGTHQPDLIFMDLHMPVMDGMSAMRAIRQ 1067

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
             E N  NR                  VPI+A+TAD++  T  E  R+G DG V KPF+ +
Sbjct: 1068 AEKNSGNR-----------------RVPIIALTADIMPETLAEVFRAGGDGLVPKPFKQK 1110

Query: 839  QLYREVSRFFPP---IPDRS 855
            +    +  + P     PD S
Sbjct: 1111 EFISMLDEWLPSGHQSPDES 1130


>gi|434387854|ref|YP_007098465.1| signal transduction histidine kinase [Chamaesiphon minutus PCC
           6605]
 gi|428018844|gb|AFY94938.1| signal transduction histidine kinase [Chamaesiphon minutus PCC
           6605]
          Length = 696

 Score =  265 bits (677), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 190/605 (31%), Positives = 293/605 (48%), Gaps = 79/605 (13%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK AE+A+ AKS FLA +SHEIRTPMNGV+GM  +L+DTEL   Q ++V T + SG AL+
Sbjct: 162 KKVAESANKAKSAFLAAMSHEIRTPMNGVIGMTGLLLDTELTSQQHEFVSTIRHSGDALL 221

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           +LIN++LD +K+ESGKLEL+   FN+R  +++ L L + K+ +K +ELA  I    P  L
Sbjct: 222 TLINDILDFSKIESGKLELDYQPFNIRDCIEETLDLLAPKAAEKNLELAYLIYKNTPNYL 281

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVY---LVEEVVDSIEVETELSSSKNTLSGY 426
            GD  R RQI+ NL+GN +KFT  G + V V    +  E  D++                
Sbjct: 282 YGDVTRIRQILVNLVGNGLKFTNSGEVIVGVTARKIAAEDADAV---------------- 325

Query: 427 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 486
                                     ++ D   +   V+DTG GIP +   R+F  F QV
Sbjct: 326 -------------------------VTADDTYEVRFVVKDTGIGIPQDKIDRLFKAFSQV 360

Query: 487 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 546
             S +R +GGTG+GL ISK L   M G +   S  + GS F FT +     +T++    +
Sbjct: 361 DSSTTRNYGGTGLGLIISKRLTELMHGRMWVESNSDGGSNFFFTIIAKASPATTSSTWKE 420

Query: 547 QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
           Q  +QP    ++ QG + L+V+      K+     Q  G+         + L ++ +   
Sbjct: 421 Q--SQP----AQLQGKRLLIVEDNATHRKILALQAQSWGMHAHATESGAEAL-KLLNLRG 473

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
             ++ +++ ++ E D          +R+    +Q    ++ +S++ +R+      VS  +
Sbjct: 474 HFDLAILDMQMPEMD---GLTLAQKIREFP-EYQQLPLVMLSSLNINRSEIEAANVSFAA 529

Query: 667 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
            + KP+    L   L   +G     +I   +  +          +IL+ +DN VN KVA 
Sbjct: 530 TLNKPIGHFQLQDVLAHILGESENKSIVKPKASNYDRYQATFPLRILLAEDNLVNQKVAM 589

Query: 727 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT-KIIREM-EHNFN 784
             LKR G        G +  ELL     +D   MD+QMP+MDG EAT +I+ E  EH   
Sbjct: 590 HMLKRIGYQADIAMNGVEVLELLR-DRAYDVVLMDLQMPKMDGMEATRRILTEFPEHRCP 648

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                 I+AMTA  ++   +ECL +GM  YV+KP + EQL + +
Sbjct: 649 T---------------------IIAMTASALEGDKQECLAAGMHDYVTKPVKLEQLAQAL 687

Query: 845 SRFFP 849
           ++  P
Sbjct: 688 NQCQP 692



 Score = 44.3 bits (103), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 21/137 (15%)

Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
           ILIVDD+++   +    +++ G  V   + G++A  ++    Q D   MD  MPEMDGFE
Sbjct: 13  ILIVDDDDLVRSLLCEKVRKDGYQVRTAQNGEEAL-VIYQEIQPDLVLMDGVMPEMDGFE 71

Query: 772 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
             + ++        ++  GE++            P+L +T    +A+ +     G   Y+
Sbjct: 72  CCEQLQ--------KLPGGELT------------PVLMITGLDDKASLDRAYAVGAADYI 111

Query: 832 SKPFEAEQLYREVSRFF 848
           +KP     L + V R  
Sbjct: 112 TKPIHWAVLRQRVKRVL 128


>gi|261210923|ref|ZP_05925213.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
 gi|260839898|gb|EEX66498.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
          Length = 1324

 Score =  265 bits (677), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 189/618 (30%), Positives = 301/618 (48%), Gaps = 103/618 (16%)

Query: 238  KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
            ++EE+   + + KK A+A   AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ Y
Sbjct: 588  RMEEE---LRDAKKMADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKY 644

Query: 298  VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
            V     S K L+ +IN++LD +K+E+GKL +E + FNL  +LD+++S+ S K+Q+KG+E 
Sbjct: 645  VTRINESAKNLLGIINDILDFSKMEAGKLHVERIDFNLDDVLDNLISVISLKAQEKGIEF 704

Query: 358  AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
             + I   +P  LIGDP R  Q++ NL GN++KFT +G I ++  +               
Sbjct: 705  LMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTHQGEIVISARV--------------- 749

Query: 418  SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                 +  N+   T            L  +V+DTG GI  E  +
Sbjct: 750  ---------------------RQLNEQQVT------------LFFAVKDTGIGITQEKLA 776

Query: 478  RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
             +F  F Q   SI+R +GGTG+GLSISK LV  M GEI   S    GSTF F+ V G   
Sbjct: 777  GLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGEISAHSEEGKGSTFEFSVVCGLQE 836

Query: 538  STSNEHNSQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 594
            +   +            ++    G+   + LVVD       +    +  +   V  VS+ 
Sbjct: 837  ARMRD------------IAQPLHGLADKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNG 884

Query: 595  LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 654
             + LS+I    K  +M+ V+   W          +  ++ LG   Q+K FL+        
Sbjct: 885  FEALSEIQ--QKPFDMLFVD---WNMPGMNGIELLTRVKSLGLREQTKCFLVTAYGRDIH 939

Query: 655  ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN----KGNIRNWELPSMSLRHLLLGR 710
             ++    + + S+I+KP+  S L  ++  + G+ +    +  +     P+ +      G+
Sbjct: 940  LDSENSKL-VDSLIVKPVNPSNLLDAIVTSYGIDHVRHKQTEVHQHRKPNFA------GQ 992

Query: 711  KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
             +L+V+DN VN +VA   L+  G +V+    G++A + L     FD   MD+QMP MDG 
Sbjct: 993  TLLLVEDNEVNQEVALGLLQETGLSVIVANNGQEALQRL-AEKSFDLVLMDMQMPVMDGI 1051

Query: 771  EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
             ATK IR  E     R +                +PI+AMTA+ +    E C ++GM+ +
Sbjct: 1052 TATKKIRADE-----RWKT---------------LPIVAMTANAMATDIEHCTQAGMNDH 1091

Query: 831  VSKPFEAEQLYREVSRFF 848
            +SKP + ++ Y  + +F 
Sbjct: 1092 LSKPIDVDKFYHVLKQFL 1109


>gi|428212990|ref|YP_007086134.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
 gi|428001371|gb|AFY82214.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
          Length = 1811

 Score =  265 bits (676), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 185/611 (30%), Positives = 298/611 (48%), Gaps = 105/611 (17%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            +++ +++A  A   KSQFLA +SHEIRTPMNGV+GM D+L+ T L   QQD+V+  + SG
Sbjct: 1139 LVQAREQALQASRMKSQFLANMSHEIRTPMNGVIGMTDLLLKTPLSSQQQDFVKILKTSG 1198

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            + L+ LIN++LD +K+E+G++ L+   F L + +++ + L + ++Q K +EL   +   +
Sbjct: 1199 QNLLILINDILDFSKLEAGEMRLDRTEFYLNSCIEETIDLLATQAQSKRLELLFLVDSEI 1258

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  LIGDP R RQ++ NL GN++KFTE+G + V          S++++T  +++      
Sbjct: 1259 PPRLIGDPTRLRQVLMNLTGNALKFTEEGEVVVQA--------SLQIQTPTTTT------ 1304

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                              L   V DTG GI  + Q ++F  F Q
Sbjct: 1305 ----------------------------------LYFEVRDTGIGINAQDQHKLFQSFSQ 1330

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
            V  S +R +GGTG+GL+I K LV  M GE+G  S   +GS F FTA F            
Sbjct: 1331 VDASTTRKYGGTGLGLAICKQLVTLMGGELGVESSVGVGSRFWFTATFETVPG-----GV 1385

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
            + +   P S     + ++ LV+D      ++   +++   +Q E V++  + ++ + +  
Sbjct: 1386 KVLPELPQSP----RNLRLLVIDHNATSREMICAYLESWHLQGEAVANSSEAMAILQNAD 1441

Query: 606  KIIN-----MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 660
               N     +I ++    E +T   TL  +        F S  +++  SI          
Sbjct: 1442 AEGNPYSLVLIDLQNAQSEGETLAKTLIYD------ASFSSLKWIVMVSIHQHELVKRLL 1495

Query: 661  GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR---------- 710
                   ++KP+++S L   L +A      G       PS+ LR    GR          
Sbjct: 1496 KKGAAGYLLKPIKASRLLEGLTQAFQSQTSGVS-----PSLFLRE-DSGRSSPVLEPVKN 1549

Query: 711  -KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
             KIL+V+D  +N KV    LK  G A  CVE G++A + L     +D   MD  MP +DG
Sbjct: 1550 LKILLVEDTPINQKVILNQLKVLGYAADCVENGQQALDCL-AEQSYDIVLMDCLMPVLDG 1608

Query: 770  FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
            ++ TK++R+ E                    S+ H PI+AMTA+ ++   E+CL +GMD 
Sbjct: 1609 YKTTKVVRDREG-------------------SSRHTPIIAMTANAMKGDREKCLEAGMDD 1649

Query: 830  YVSKPFEAEQL 840
            Y+SKP + +QL
Sbjct: 1650 YLSKPVDLDQL 1660


>gi|443475295|ref|ZP_21065249.1| Hpt sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
 gi|443019885|gb|ELS33914.1| Hpt sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
          Length = 850

 Score =  265 bits (676), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 188/609 (30%), Positives = 310/609 (50%), Gaps = 95/609 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K+ AEA++ AKS FLAT+SHEIRTPMN V+GM  +L++T+LD  QQD+  T   SG+ L+
Sbjct: 178 KQIAEASNQAKSSFLATMSHEIRTPMNAVIGMTGLLLETDLDPRQQDFANTIHNSGEHLL 237

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           +LINE+LD +K+E+ +++LE + F L + +++V  + +G +  KG++LA++I   VP+ L
Sbjct: 238 NLINEILDFSKLEAREMQLEELDFELESSIEEVADILAGSAHSKGLDLALFIHPDVPKYL 297

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GD GR RQ++ NL  N+IKFT +G + + V + +E                        
Sbjct: 298 KGDIGRLRQVLLNLTNNAIKFTRQGEVTIEVAIAKE------------------------ 333

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                         D +T          ++L  SV DTG GI LEAQS++F PF+QV  S
Sbjct: 334 --------------DLTT----------VSLSFSVIDTGIGISLEAQSKLFEPFIQVDAS 369

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R +GGTG+GL+I K LV  M G I   S  N GSTF FT  F   S         +  
Sbjct: 370 TTRQYGGTGLGLAICKQLVRLMGGSIYVESEENKGSTFWFTVPFQKQS---------EEG 420

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV---SDQLQCLSQIASGSK 606
           + P +VS+  Q ++ LVVD       +  + ++   +QV+++   ++ +  L +  +  +
Sbjct: 421 SYPLAVSA-LQDLRVLVVDDSVTNCNILYHQLKSWKMQVDILIQSTEAIDALHRAIAIGQ 479

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL------LANSISSSRANTSTD 660
                L++ ++ + D            +LG   +S   L      +  S+  + A +   
Sbjct: 480 PYQFALLDMQMPDLDG----------EQLGTQIKSSPILRDTHLIMLTSLDQNGAASRML 529

Query: 661 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR-KILIVDDNN 719
            +     + KP+R   L  SL   +  G    + +     M+    L  + KIL+V+D+ 
Sbjct: 530 EIGFADYLRKPVRKLRLLNSLINTIS-GKSAKLIDQPPEFMAEEVKLPSQLKILLVEDSP 588

Query: 720 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
           +N KV    L   G  V  V  G++A ++L     +    MD QMP MDG+  ++ IRE 
Sbjct: 589 INQKVTINQLHNLGYRVDVVANGQEALDIL-DKISYSIILMDCQMPVMDGYVTSRRIRER 647

Query: 780 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
                          EA +N++   V I+A+TA+ ++A  + C+ +GMD ++SKP   + 
Sbjct: 648 ---------------EASQNLAGAGVAIIALTANAMKADRDRCIAAGMDDFLSKPVRKQD 692

Query: 840 LYREVSRFF 848
           L ++++ ++
Sbjct: 693 LAKKLAYWY 701


>gi|344338545|ref|ZP_08769477.1| integral membrane sensor hybrid histidine kinase [Thiocapsa marina
           5811]
 gi|343801827|gb|EGV19769.1| integral membrane sensor hybrid histidine kinase [Thiocapsa marina
           5811]
          Length = 763

 Score =  265 bits (676), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 182/606 (30%), Positives = 295/606 (48%), Gaps = 95/606 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K++AE+A +AK QF+A +SHEIRTPMNGVLG+L+ML    L   Q+  V  A  S ++L+
Sbjct: 242 KEQAESASIAKGQFVANMSHEIRTPMNGVLGLLEMLSHERLSAEQRGLVDVAHTSAESLL 301

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+ESG+L+ E + F+LR +++DV  LF+  ++ K +EL  ++   +P  +
Sbjct: 302 NVINDVLDFSKIESGRLDFERIPFDLRRLVEDVAGLFTASARSKQLELVCFVPPGLPARV 361

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R RQI+TN++GN++KF+  G + + V                             
Sbjct: 362 MGDPHRLRQILTNVLGNAVKFSLSGEVALRV----------------------------- 392

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D C    G   F+                     + DTG G+  E  +R+F PF+Q   S
Sbjct: 393 DVCAEEAGRSRFS-------------------FEISDTGIGMTPEQLARLFKPFVQADGS 433

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R  GG+G+GL+ISK L+  M G+I   S    GS F     F + S T+   +     
Sbjct: 434 TTRRFGGSGLGLAISKDLIELMGGDIQVESTFGRGSRFLVRLPFDHQSETAEPTD----- 488

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSK 606
                  +  +G + L VD      ++  +++Q  G+  E V+D    L+ L +  +  +
Sbjct: 489 ------GAGLEGRRILCVDDNATNLEILGHYLQEWGVAYEAVTDGPTALERLVRAQARDR 542

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
                +++ ++ E D          +R        +L LL++         + + V +  
Sbjct: 543 PFEAAVLDLQMPEMD---GLALARAIRATPGIAAVRLILLSSGGCPEPVGEAAETVDL-- 597

Query: 667 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL---LGRKILIVDDNNVNLK 723
           V+ KP+R  +L  +L + +  G         +P      +L   +  ++L+ +DN VN +
Sbjct: 598 VLSKPVRQGLLRDALAQVLVTGRP-------IPDPGATPILDRPMTGRVLLAEDNPVNQQ 650

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           VA   L R G     VE G +A E L    ++DA  MD+QMP +DG  AT+  RE EH  
Sbjct: 651 VARGMLMRLGIEADLVENGAEAIERL-ASGRYDAVLMDMQMPVLDGLGATRHWREREH-- 707

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
               R G             H+PI+AMTA+ + A  + CL +GMD Y++KP +   L   
Sbjct: 708 ----REGRS-----------HIPIIAMTANAMAADRDACLEAGMDDYLAKPVKIGALRET 752

Query: 844 VSRFFP 849
           + R+ P
Sbjct: 753 LRRWLP 758


>gi|428777290|ref|YP_007169077.1| multi-sensor hybrid histidine kinase [Halothece sp. PCC 7418]
 gi|428691569|gb|AFZ44863.1| multi-sensor hybrid histidine kinase [Halothece sp. PCC 7418]
          Length = 1478

 Score =  265 bits (676), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 195/625 (31%), Positives = 289/625 (46%), Gaps = 104/625 (16%)

Query: 226  GHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 285
            G++  +    I + +E    +   K+ AE A   KS+FLAT+SHEIRTP+NGV+GML +L
Sbjct: 814  GNLIYSAAREITERKEVEAELRAAKETAEMAAQTKSEFLATMSHEIRTPINGVIGMLHLL 873

Query: 286  MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 345
             DTEL   Q+  +  AQ+S  +L+ +IN++LD +KV+SG L+LE V F+L A+L+D    
Sbjct: 874  QDTELTFQQRSQLEIAQSSATSLLGIINDILDFSKVDSGNLKLETVEFDLIALLEDFAKT 933

Query: 346  FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 405
             +  +Q+K +EL + +S      + GDP R RQI TNL+ N+IKFT+ G I +  YL   
Sbjct: 934  MALPAQEKDLELILDVSQIQQPVVKGDPSRLRQIFTNLVSNAIKFTQAGEILIKCYL--- 990

Query: 406  VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 465
                                                           +  + + LI  V+
Sbjct: 991  ----------------------------------------------ETVGEQLRLIGIVK 1004

Query: 466  DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 525
            DTG GIP + Q  +F PF Q   S +R +GGTG+GL+I K L   M G I   S  + GS
Sbjct: 1005 DTGMGIPEDKQGSLFDPFTQADASTTRQYGGTGLGLAIVKRLCDLMDGAIALESKLDEGS 1064

Query: 526  TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
             FTFT      ++            QP +++ + QG+  LVV       +     +Q  G
Sbjct: 1065 CFTFTVTLEASTA------------QP-TLTRDLQGLSILVVAENGATQQALSRQLQAWG 1111

Query: 586  IQVEVVSDQ---LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNL---RKLGCGF 639
              V   SD    L   SQ          IL        D+++  L V +L    +     
Sbjct: 1112 ATVSTASDSATALSLCSQFRETPPFAIAIL--------DSNLPDLEVQDLIQQWQADSRL 1163

Query: 640  QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL----QRAMGVGNKGNIRN 695
            QS   ++  +I+    + S   + + + + KP+  S L   L    +    +    +   
Sbjct: 1164 QSMAIVMMMAINQVNQSHSLTHLGMRATVTKPVVPSQLWQVLTQLSENQTTLTQPVSTSQ 1223

Query: 696  WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF 755
              +PS  L+       +L+V+DN VN  V    LK+Y   V     G +A  +L   H +
Sbjct: 1224 TVIPSPQLKS---NSCVLVVEDNRVNQLVIQGMLKKYPLQVQIAHDGLEALVMLQKSH-Y 1279

Query: 756  DACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815
            D  FMD QMP MDG+EAT+ IR  +HN                      +PI+AMTA  +
Sbjct: 1280 DLVFMDCQMPNMDGYEATRQIRAGKHNQT--------------------IPIIAMTAYAM 1319

Query: 816  QATYEECLRSGMDGYVSKPFEAEQL 840
                E+CL +GM+ YVSKP   EQ+
Sbjct: 1320 VGDKEKCLAAGMNDYVSKPIAVEQV 1344


>gi|320155329|ref|YP_004187708.1| BarA sensory histidine kinase ( VarS GacS) [Vibrio vulnificus
           MO6-24/O]
 gi|319930641|gb|ADV85505.1| BarA sensory histidine kinase (VarS GacS) [Vibrio vulnificus
           MO6-24/O]
          Length = 928

 Score =  265 bits (676), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 223/750 (29%), Positives = 353/750 (47%), Gaps = 121/750 (16%)

Query: 118 ATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSD 177
           A P E   A  GY+    D+ SL      +L   Q +F     +       S++ S +  
Sbjct: 146 AEPGEATRAI-GYIAVELDLSSL------RLQQYQEVFSAFLVLILGLGLASVFASRLMQ 198

Query: 178 DGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQ 230
           D    ++ + N  D  R+ ++  R + K    L ++   I  + I+    H      I Q
Sbjct: 199 DVTQPITHMKNVVDRIRRGQLDVRIEGKMHGELDSLKNGINAMAISLSEYHVEMQHSIDQ 258

Query: 231 ATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 287
           AT +    +E+     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ 
Sbjct: 259 ATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLK 318

Query: 288 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 347
           T+L  +Q DY++T + S   L+++IN++LD +K+E+GKL LE + F+ R  L++V+SL +
Sbjct: 319 TQLTNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQA 378

Query: 348 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 407
             + +KG+E+ + I  R+PE ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +  +  
Sbjct: 379 TSAHEKGLEITLKIDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSG 438

Query: 408 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 467
           DS++++            + V D                                    T
Sbjct: 439 DSLDLQ------------FMVKD------------------------------------T 450

Query: 468 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
           G GI    Q+++F  F Q   SISR +GGTG+GL I++ LV +M GEI   S  + GSTF
Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510

Query: 528 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF-QGMKALVVDPRPIRAKVSRYHIQRLGI 586
            FT            H++Q      +S+ +E+ QG + L+V+P    A V++  + + GI
Sbjct: 511 WFTLRL---------HSTQM--PMSDSIEAEYLQGKELLLVEPNMQAAAVTQQVLTQEGI 559

Query: 587 QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 646
            V   S     L   A G   + + L   +V+E +T      + N         +   L 
Sbjct: 560 NVTYRS----LLPDNAKGYDFVLLSLAVNQVYELET------IENWLSRALHISANTILA 609

Query: 647 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSL 703
             S   + A+  T+   I   + KPL    L  SL   Q    +         E  S+S 
Sbjct: 610 IPSTELALADQLTERFGI-QCLTKPLGRRKLLQSLAAKQTLQPLLPAPENAQAERSSLS- 667

Query: 704 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 763
                   +L VDDN  NLK+  A L     +V     G+ A + +    QFD  FMDIQ
Sbjct: 668 --------VLAVDDNPANLKLITALLAERVVSVTSCSSGQDAVD-IATSRQFDLIFMDIQ 718

Query: 764 MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 823
           MP+MDG  A K+I++ E N N                     P++A+TA  +    +  L
Sbjct: 719 MPKMDGVTACKLIKQTELNANT--------------------PVIAVTAHAMSGERDRLL 758

Query: 824 RSGMDGYVSKPFEAEQLYREVSRFFPPIPD 853
           ++GMD Y++KP E   L + +  + P   D
Sbjct: 759 KAGMDDYLTKPIEEHILQQVLIHWNPNTCD 788


>gi|37681007|ref|NP_935616.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus YJ016]
 gi|37199757|dbj|BAC95587.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 928

 Score =  265 bits (676), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 223/750 (29%), Positives = 353/750 (47%), Gaps = 121/750 (16%)

Query: 118 ATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSD 177
           A P E   A  GY+    D+ SL      +L   Q +F     +       S++ S +  
Sbjct: 146 AEPGEATRAI-GYIAVELDLSSL------RLQQYQEVFSAFLVLILGLGLASVFASRLMQ 198

Query: 178 DGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQ 230
           D    ++ + N  D  R+ ++  R + K    L ++   I  + I+    H      I Q
Sbjct: 199 DVTQPITHMKNVVDRIRRGQLDVRIEGKMHGELDSLKNGINAMAISLSEYHVEMQHSIDQ 258

Query: 231 ATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 287
           AT +    +E+     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ 
Sbjct: 259 ATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLK 318

Query: 288 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 347
           T+L  +Q DY++T + S   L+++IN++LD +K+E+GKL LE + F+ R  L++V+SL +
Sbjct: 319 TQLTNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQA 378

Query: 348 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 407
             + +KG+E+ + I  R+PE ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +  +  
Sbjct: 379 TSAHEKGLEITLKIDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSG 438

Query: 408 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 467
           DS++++            + V D                                    T
Sbjct: 439 DSLDLQ------------FMVKD------------------------------------T 450

Query: 468 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
           G GI    Q+++F  F Q   SISR +GGTG+GL I++ LV +M GEI   S  + GSTF
Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510

Query: 528 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF-QGMKALVVDPRPIRAKVSRYHIQRLGI 586
            FT            H++Q      +S+ +E+ QG + L+V+P    A V++  + + GI
Sbjct: 511 WFTLRL---------HSTQM--PMSDSIEAEYLQGKELLLVEPNMQAAAVTQQVLMQEGI 559

Query: 587 QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 646
            V   S     L   A G   + + L   +V+E +T      + N         +   L 
Sbjct: 560 NVTYRS----LLPDNAKGYDFVLLSLAVNQVYELET------IENWLSRALHISANTILA 609

Query: 647 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSL 703
             S   + A+  T+   I   + KPL    L  SL   Q    +         E  S+S 
Sbjct: 610 IPSTELALADQLTERFGI-QCLTKPLGRRKLLQSLAAKQTLQPLLPAPENAQAERSSLS- 667

Query: 704 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 763
                   +L VDDN  NLK+  A L     +V     G+ A + +    QFD  FMDIQ
Sbjct: 668 --------VLAVDDNPANLKLITALLAERVVSVTSCSSGQDAVD-IATSRQFDLIFMDIQ 718

Query: 764 MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 823
           MP+MDG  A K+I++ E N N                     P++A+TA  +    +  L
Sbjct: 719 MPKMDGVTACKLIKQTELNANT--------------------PVIAVTAHAMSGERDRLL 758

Query: 824 RSGMDGYVSKPFEAEQLYREVSRFFPPIPD 853
           ++GMD Y++KP E   L + +  + P   D
Sbjct: 759 KAGMDDYLTKPIEEHILQQVLIHWNPNTCD 788


>gi|428308622|ref|YP_007119599.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
 gi|428250234|gb|AFZ16193.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
          Length = 1157

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 206/650 (31%), Positives = 334/650 (51%), Gaps = 44/650 (6%)

Query: 217 GILVIASLVGHIFQATVNRIAKVEEDYHGMMELKK-KAEAADVA--KSQFLATVSHEIRT 273
           G L I   +   + A +  +A  +E      +L+K KAE+ +    KSQFLA +SHEIRT
Sbjct: 375 GRLWILDDITEPYLAQLELVASSQELSQTNQQLEKAKAESEEATRIKSQFLANMSHEIRT 434

Query: 274 PMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 333
           PMN ++GM  +L+ TEL   Q+D+V TAQ+S +AL++LIN++LD +K+ESG +ELE  +F
Sbjct: 435 PMNAIIGMTGLLLTTELTPQQRDFVTTAQSSSEALLALINDILDLSKIESGSVELEKQAF 494

Query: 334 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK 393
           NL++ +++ L + + K+ +KG+ELA  +  + P  ++GD  R RQI+ NL+ N++KFT+ 
Sbjct: 495 NLQSCIEESLDILALKAAEKGIELAYGMHPQTPSIIVGDVTRLRQILVNLVSNAVKFTQT 554

Query: 394 GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 453
           G + V+V   E   D  +   +              + C++ +    F        F+  
Sbjct: 555 GEVVVSVTAKELEGDKGDKGDKGDKGDKGEKILYTNETCYNLQPATKFE-------FQ-- 605

Query: 454 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKG 513
                    +V+DTG GIP +   R+F  F QV  S +R +GGTG+GL+I K L   M G
Sbjct: 606 --------FAVKDTGIGIPPDRIDRLFKSFSQVDASTTRKYGGTGLGLAIGKQLSEMMGG 657

Query: 514 EIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIR 573
            +   S  N GSTF FT V    ++T+   +S  MN+  ++   +FQG + L+VD     
Sbjct: 658 RMWVESQVNRGSTFYFTLV---AAATA---DSSPMNS--DNFPPQFQGKRLLIVDDNDTY 709

Query: 574 AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLR 633
            ++    +Q  G+ +   +   +    +  G   ++M L++ ++   D          +R
Sbjct: 710 RQILTQQLQSWGMLIYGAASAAEAFDWLNQGQP-LDMALLDMQMPGMD---GLTLATKIR 765

Query: 634 KLGCGFQSKLFLLANSISS-SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM-GVGNKG 691
                +Q+   +L  SI+   RAN +   V + + + KP++ S L + L + + G     
Sbjct: 766 SYS-NYQTLPLVLLTSINGLERANQTHVPVDLAAFLTKPIKQSQLDSVLNQILAGSSISV 824

Query: 692 NIRNWELPSMSLR-HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 750
           N     LP   L+    L  +IL+ +DN VN KVA   LKR G     V  G +  + + 
Sbjct: 825 NPLPVTLPENPLQLATQLPLRILLAEDNGVNQKVALHLLKRIGYQADVVSNGLEVLDAVK 884

Query: 751 PPHQFDACFMDIQMPEMDGFEATK-IIREMEHN-----FNNRIRRGEVSIEAYENVSNFH 804
               +D   MD+QMP MDG  AT+ I +E+  +      N   +  + +  +    S+  
Sbjct: 885 -RKSYDVVLMDVQMPLMDGLTATRCICQELSGDGEFGEANQNSQNSDRNQPSKPATSHKR 943

Query: 805 VPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIPDR 854
             I+AMTA+ +Q   EECL +GMD Y+ KP   + L + +S    P+PDR
Sbjct: 944 PRIIAMTANAMQGDREECLNAGMDDYLCKPISLKALIQALSH-CQPLPDR 992


>gi|346224475|ref|ZP_08845617.1| PAS/PAC sensor hybrid histidine kinase [Anaerophaga thermohalophila
            DSM 12881]
          Length = 1033

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 184/617 (29%), Positives = 306/617 (49%), Gaps = 111/617 (17%)

Query: 242  DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
            D     E++++   A+ AKS+FLA +SHEIRTPMNG++G  ++L  T L+  QQ+ +   
Sbjct: 516  DITAQKEMQRREAEANKAKSEFLANMSHEIRTPMNGIIGATELLGQTRLNRDQQNIITII 575

Query: 302  QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
              S   L+++IN +LD +K+E+GKL++E   FNLR+ +D +L   + +S DK +EL   +
Sbjct: 576  SRSCDNLLNIINAILDFSKIEAGKLKIEKYPFNLRSTVDYLLDQMAFRSHDKNLELLASV 635

Query: 362  SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
             + +P  LIGD GR  Q+I NLMGN++KFT++G + + V                     
Sbjct: 636  EETIPSVLIGDEGRLIQVIINLMGNAVKFTQEGEVVLKV--------------------- 674

Query: 422  TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 481
                  + +R           Q+G            I L  ++ED+G GIP E + +IF 
Sbjct: 675  ------IIER-----------QEGKE----------IRLHFAIEDSGIGIPPEKKEKIFE 707

Query: 482  PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP---------NIGSTFTFTAV 532
             F Q   S +R +GGTG+G SISK LV  M G+I +V  P         N GS F F   
Sbjct: 708  SFTQADGSTTRKYGGTGLGTSISKMLVELMGGKI-WVESPNPNFAWSKENPGSVFHFVLP 766

Query: 533  FG-NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 591
            F  +   T N+ N+ +M           + ++AL+VD       + +      GI  E V
Sbjct: 767  FTFDRDKTDNQFNNPKM-----------KTLRALIVDNHRTNLLLLKKMFHNWGITPEAV 815

Query: 592  SDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS 651
            SD+   + ++ + +K  N + ++  ++ K    +   +  +++     ++ LF       
Sbjct: 816  SDEKAAIEKLKTDNK-FNFVTIDSHIFSK---TNQSLIKEIKEKAPSIKAILF------- 864

Query: 652  SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK 711
            SS+ N S +GV +  V+ KP++ ++L  ++ +     +    +N ELP  S       ++
Sbjct: 865  SSQRNPSMEGVDV--VLEKPIKQTILFNTISQLF--FDSSEEKNGELPVSSSEK---NKR 917

Query: 712  ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ-FDACFMDIQMPEMDGF 770
            IL+V+DN +N K+    L R G + V    G++A +L++   + FD   MDIQMP ++G 
Sbjct: 918  ILLVEDNPINQKITEKMLGRIGLSTVISNNGQEALDLVLNDKEDFDLILMDIQMPVLNGL 977

Query: 771  EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            +ATK +R+                      +    PI+AMTA+V++   E CL  GM+ Y
Sbjct: 978  DATKELRK----------------------AGVLTPIVAMTANVLKGDREICLAVGMNDY 1015

Query: 831  VSKPFEAEQLYREVSRF 847
            + KP +   L   + ++
Sbjct: 1016 IGKPVKLNDLQHTLQKW 1032


>gi|315127393|ref|YP_004069396.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913]
 gi|315015907|gb|ADT69245.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913]
          Length = 924

 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 181/604 (29%), Positives = 290/604 (48%), Gaps = 92/604 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A+  KS FLA +SHE+RTP+NGV+G    L  T L+  Q+DY+ T + S  +L+
Sbjct: 280 KKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKTPLNKNQKDYLDTIELSANSLM 339

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++I+++LD +K+E+G +ELE++ F LR  +++V++L +  + DK +EL++YI+ +VP+ L
Sbjct: 340 TIISDILDFSKLEAGAMELESIQFQLRDSVNEVMTLLAPSAHDKQLELSIYINPQVPDHL 399

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP RF+Q++ NL+ N+IKFTEKG I             +++   L   + T       
Sbjct: 400 TGDPTRFKQVLINLLSNAIKFTEKGAI------------KVDISHRLLDEERT------- 440

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                        +++VSV DTG GIP + Q  +FT F Q   S
Sbjct: 441 -----------------------------SVLVSVADTGVGIPADKQDALFTAFGQADSS 471

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           I+R  GGTG+GL I+K++V  M G I   S P  G+ FTF  VF          N   +N
Sbjct: 472 ITRKFGGTGLGLIITKHIVEAMSGRITLNSAPGSGTCFTFNGVF-------RLPNHVFIN 524

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
           + P   +    G + L ++P           +Q   + V    ++ + L  I +     +
Sbjct: 525 DLP---TQSLIGKRVLYLEPHKHTHHAVASLLQEWKVSVTPCYNETEFLECIKNSEINFD 581

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
           + L+       D      +V  +R+        L+L+ N++S +       G    + + 
Sbjct: 582 ICLIGHMASVDDMQRLKSYVKAVRE----STDYLYLMLNTVSHNMREAFI-GSGADACLS 636

Query: 670 KPLRSSMLAASLQRAMGVGNKG-NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
           KPL    L   L     + +   NI   E         LL  K+L+VDDN+ NLK+    
Sbjct: 637 KPLNHRKLCELLAAPYRLDHPAHNIEQHE-------QTLLPLKVLVVDDNDANLKLIYTL 689

Query: 729 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
           L      +     G +A   L   H++D  FMDIQMP MDG  A K+I+E   N +    
Sbjct: 690 LNEQVELIDTAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDGITACKLIKESSLNED---- 744

Query: 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
                            PI+A+TA  + +  E+ L+ G +GY++KP + + L + +    
Sbjct: 745 ----------------TPIIAVTAHALNSEKEQLLKDGFEGYLTKPIDEDMLNQIICDHS 788

Query: 849 PPIP 852
           P +P
Sbjct: 789 PQLP 792


>gi|94264445|ref|ZP_01288234.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455135|gb|EAT05357.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1009

 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 196/666 (29%), Positives = 321/666 (48%), Gaps = 102/666 (15%)

Query: 204 KAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYH-GMMELKKKAEAADVAKSQ 262
           K P+PL  +    G + + +++     A +    K +ED      E+ + A+AA++AKS+
Sbjct: 303 KPPYPLATVLAVGGAVFLITMLFSSLAALLFSWRKWQEDARLKAEEMARDAQAANLAKSE 362

Query: 263 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVE 322
           FLA +SHEIRTP+NGV+GM  +L++TEL+  Q+ Y  T   SG++L+SLIN++LD +K+E
Sbjct: 363 FLANMSHEIRTPLNGVIGMTGLLLETELNSQQRRYAETMLYSGESLLSLINDILDLSKIE 422

Query: 323 SGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITN 382
           + +LELE + F+L   +DD  +  + ++ ++G+EL    S  +   + GD GR RQ++ N
Sbjct: 423 ARQLELEEIEFDLAGTIDDFAATMAVRAHERGLELICLFSPGLSPLVKGDCGRLRQVLAN 482

Query: 383 LMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 442
           L+GNSIKFTEKG +            +I+V +     +N L  +                
Sbjct: 483 LVGNSIKFTEKGEV------------AIKVSSRDKDEENVLLSF---------------- 514

Query: 443 QDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLS 502
                                + DTG GIP E  + IF  F QV  S +R +GGTG+GL+
Sbjct: 515 --------------------EISDTGVGIPQEKLTTIFEKFSQVDASTTRKYGGTGLGLA 554

Query: 503 ISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGM 562
           I++ LV  M GEI   S    GS F+FT +F            +     P ++  E Q +
Sbjct: 555 ITRQLVDLMGGEITVSSREGSGSVFSFTVLF-----------RKVAGEIPTTM--ELQDV 601

Query: 563 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKIINMILVEQEVWE 619
             LVVD      +V   ++    ++  +  D    LQ L Q  +G     M L++ ++  
Sbjct: 602 PVLVVDDNATNREVLESYLNSWKMRPTMAEDGATALQKLQQAVAGDSPFAMALLDMQM-- 659

Query: 620 KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAA 679
               +  + +    K      +   +L  S+ S   + +       + + KPLR      
Sbjct: 660 --PGMDGMALARAIKEDSALSATPLILLTSLGSGDGDQAERRHLFAACLNKPLRQR---- 713

Query: 680 SLQRAMGVGNKGN-IRNWELPSMSLRHLLLGRK---ILIVDDNNVNLKVAAAGLKRYGAA 735
            L+  + + + G  +   E PS     + L  K   IL+V+DN +N +VA A + + G  
Sbjct: 714 ELRHVISMISSGKAVEKAEKPSFGEMLVSLDGKQPRILLVEDNIINQQVAKAVMAKIGIN 773

Query: 736 VVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVS 793
           +     G++A + L  +P   +D   MDIQMP MDG  AT+ IR ++             
Sbjct: 774 IHVAANGQEALDALGSIP---YDLVVMDIQMPVMDGLTATRKIRAVD------------- 817

Query: 794 IEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP---P 850
                   N  +PI+AMTA V++    ECL +GM+ Y++KP   + L  ++ ++ P    
Sbjct: 818 ----STALNPQIPIIAMTARVMKGDQAECLAAGMNDYLTKPLVPQALREKLLQWLPGAVT 873

Query: 851 IPDRSP 856
           +P ++P
Sbjct: 874 MPRQTP 879


>gi|398348886|ref|ZP_10533589.1| multi-sensor hybrid histidine kinase [Leptospira broomii str. 5399]
          Length = 847

 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 189/588 (32%), Positives = 290/588 (49%), Gaps = 91/588 (15%)

Query: 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 318
           AKS+FLA +SHEIRTPMNGV+GM ++L+D++L   +++Y    Q SG++L+S+IN++LD 
Sbjct: 332 AKSEFLAMMSHEIRTPMNGVIGMTELLLDSDLTGEKREYAEIIQKSGESLLSIINDILDY 391

Query: 319 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 378
           +K+ESG L LE+  F++    ++ L LF   + +KG++L  +I   VP+ +IGD  R RQ
Sbjct: 392 SKIESGTLRLESKEFSILETAEETLDLFRSSAAEKGIDLICHIDPNVPDIIIGDKLRLRQ 451

Query: 379 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 438
           ++ NL GNS+KFTEKG +F++                             A+     K F
Sbjct: 452 VLINLFGNSLKFTEKGEVFLS-----------------------------AEVSKKDKSF 482

Query: 439 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 498
            T                      SV DTG GIP E Q ++F PF QV  S +R +GGTG
Sbjct: 483 CTIR-------------------FSVRDTGIGIPKEKQKQLFNPFYQVDTSSTRKYGGTG 523

Query: 499 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 558
           +GLSIS  L+  M G I   S  N G+TF+F        + S E  +Q +   PN     
Sbjct: 524 LGLSISYRLIKMMGGRIWLESDVNKGTTFSFEI-----QAESVEQKNQVI---PNINYPG 575

Query: 559 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW 618
            +  K L++D      ++  + +Q LG+     S + + LS +  G      IL E  + 
Sbjct: 576 LENRKILIIDDNATNLRILSHQLQILGLMTFSSSSKEEALSLLDLG------ILPELAIL 629

Query: 619 EKDTSVS--TLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 676
           + + + +        LR+    F   L LL++SI   +     D + +   + KP++   
Sbjct: 630 DYNLAGNNGVQIAQELRRRNFLF--PLILLSSSILDIKEREIADQLFLRQ-LSKPVKKKE 686

Query: 677 LAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----KILIVDDNNVNLKVAAAGLKRY 732
           L   +   +  G +    N     +  +  LL      ++LI +DN +NL +A   L++ 
Sbjct: 687 LEQIVTEILITGTEKGKANRSSSYLEKQKDLLQSTYPFEVLIAEDNEINLSLAKRILQKL 746

Query: 733 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 792
           G + +    GK+    L    +FD   MD+ MPEMDG +AT++IR       N   + E 
Sbjct: 747 GYSPIVATNGKQVLNRLREA-KFDVVLMDVHMPEMDGIQATQVIR-------NTWPQNE- 797

Query: 793 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
             + Y         I+AMTA  +Q   E CLR+GM+ YVSKP   E+L
Sbjct: 798 --QPY---------IIAMTAAAMQGDREICLRAGMNDYVSKPIVFEEL 834


>gi|328873441|gb|EGG21808.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1361

 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 191/604 (31%), Positives = 288/604 (47%), Gaps = 88/604 (14%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K+ AEAA  AKS F+A +SHEIRTPMNG++GM D+ +DT+L   Q++Y+   Q+S  +L+
Sbjct: 728  KEAAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTDLTAEQREYLTMVQSSAGSLL 787

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            ++IN++LD +K+E+G+LEL+   F+LR  L D L   + ++  KG+EL   I+  V + L
Sbjct: 788  TIINDILDFSKIEAGRLELDQTEFSLRNHLYDTLKTMAWRAHQKGLELVCDIAPDVADIL 847

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GDPGR RQI+TNL+GN+IKFT +G + + V + E                         
Sbjct: 848  VGDPGRLRQIVTNLVGNAIKFTAEGEVILAVDIDER------------------------ 883

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                    S ++I +  +V DTG GIP E    IF  F Q   S
Sbjct: 884  -----------------------RSNNVIVIHFTVTDTGIGIPAEKLHLIFEAFSQADGS 920

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG-NGSSTSNEHNSQQM 548
            I+R +GGTG+GL+IS  +V  M G++   S P +GS F FTAVF  + ++   EH     
Sbjct: 921  ITRKYGGTGLGLTISTRMVELMGGKLRAESTPGLGSKFEFTAVFPISDANKEIEH----- 975

Query: 549  NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS--- 605
                     + +    L++D      KV    +   GI  +           + + S   
Sbjct: 976  --------IKLKDRNTLIIDDNKTTRKVLLQMLGEYGISADSADSAETAFRLLRAASLRK 1027

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
                 I ++ ++  +D  +    +     +G    + +F++    S  R +       I 
Sbjct: 1028 HPYECIFMDAQLNGRDGFLVAEAIKQDTTIG---DASIFMMICG-SGQRGDPENRSSVIS 1083

Query: 666  SVIMKPLRS-SMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
              + KP+    ML A   R     +  N       S +     +  +IL+ +DN VN ++
Sbjct: 1084 GYLTKPISPLEMLEALQGRGGHTSDSANGDGSRAQSTTAPAETMAAEILLAEDNIVNQRL 1143

Query: 725  AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
            A   L+R+G  V   E G +A         FD   MD+QMP M GFEAT  I        
Sbjct: 1144 AVRLLERFGHRVTLAENGLQAVA-ASETKDFDLILMDVQMPHMSGFEATNTI-------- 1194

Query: 785  NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
             RIR         E   N H PI+AMTA  +Q   E+CL +GMD Y+SKP  A+QL  ++
Sbjct: 1195 -RIR---------EKALNKHTPIIAMTAHALQKDREKCLEAGMDDYLSKPINADQLRSQI 1244

Query: 845  SRFF 848
             +F 
Sbjct: 1245 EKFL 1248


>gi|325106899|ref|YP_004267967.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324967167|gb|ADY57945.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 929

 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 196/607 (32%), Positives = 299/607 (49%), Gaps = 95/607 (15%)

Query: 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 318
           AKS FLA +SHEIRTPMN ++GM ++L+D+EL   Q  YVRT   S ++L+S+INE+LD 
Sbjct: 275 AKSDFLANMSHEIRTPMNAIIGMSELLLDSELQHQQDVYVRTVLDSAESLLSIINEILDF 334

Query: 319 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 378
           +K+E+G LEL     +LR ++ + L   + ++  KG+ELA  +   +P+ ++GDP R RQ
Sbjct: 335 SKIEAGHLELSWERIDLRDLVVETLRSLAARAHRKGLELAWRVDPSIPQVVMGDPVRIRQ 394

Query: 379 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 438
           I+ NL+GN+IKFTE G I V V  +E   DS+E+  E                       
Sbjct: 395 ILMNLVGNAIKFTEAGEIVVQVKSLEMSTDSVELHFE----------------------- 431

Query: 439 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 498
                                    V DTG GI  +   +IF  F Q   S +R  GGTG
Sbjct: 432 -------------------------VRDTGIGIQQDRLQKIFDAFEQADASTTRQFGGTG 466

Query: 499 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 558
           +GL+I+  L   M G I   S+   GS F F       SS+ NE    Q++  P+     
Sbjct: 467 LGLAIASRLASAMGGMIWAESMLGQGSVFHFKIQL--TSSSRNEILDSQVDVLPD----- 519

Query: 559 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSKIINMILVEQ 615
                 LVVD       + +  +   G++V  +S   D L  L  + +G+ ++ +++ + 
Sbjct: 520 LDSRPVLVVDDNETNRLLLQDMLNSWGLEVTSMSRAADALAYLEALPAGN-VLPLLVSDV 578

Query: 616 EVWEKD--TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLR 673
            +   D  T V T+  ++     C     + L + +       +S  GVS  S ++KP++
Sbjct: 579 NMPGMDGFTLVETIRDHDRLHELC----VILLTSGTRPGDLTRSSQLGVS--SHLLKPIK 632

Query: 674 SSMLAAS-------LQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
            S L  +       LQR M    + N+ +  +P+M          IL+ +D + N  +A 
Sbjct: 633 QSELLEAIMVGFGQLQR-MKEAFRPNV-DAGIPAMP------SLTILLAEDGHANQCLAT 684

Query: 727 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
           A L+++G  V   E G+ A E  +   ++D   MD+QMPEMDG++AT+ IR  E      
Sbjct: 685 AVLQKWGHEVDVAENGRIAFEKYLTS-RYDLILMDVQMPEMDGYQATQAIRNHEATSKGE 743

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
            +RG             H+PI+AMTA  ++   E CL +GMD YVSKP   + LY  +SR
Sbjct: 744 AKRGG------------HIPIIAMTARAMKGDRERCLDAGMDEYVSKPIRRKALYEAMSR 791

Query: 847 FFPPIPD 853
           FFP + +
Sbjct: 792 FFPALEE 798


>gi|255523785|ref|ZP_05390750.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
 gi|255512488|gb|EET88763.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
          Length = 945

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 190/628 (30%), Positives = 308/628 (49%), Gaps = 116/628 (18%)

Query: 232 TVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 291
           T  R+A+ E     + + K++AEAA+ AKS+FLA +SHEIRTPMNG+ G L++L  T L 
Sbjct: 300 TEQRLAEKE-----LYKAKEQAEAANTAKSRFLANMSHEIRTPMNGIFGFLELLQATNLS 354

Query: 292 VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 351
           + Q++++R A+++ + L+ +IN++LD +K+E+ KL +E + FNLR  ++D +SL + K+ 
Sbjct: 355 LEQKEFIREAKSASEILLHIINDILDFSKIEAKKLTMEKIKFNLRNSIEDAVSLLAPKAA 414

Query: 352 DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 411
           +K +EL   I+  VPE +IGDP R RQ++ NL+ N++KFT KG I V        VD ++
Sbjct: 415 EKNLELYTMINPNVPEEVIGDPSRLRQVLNNLISNAVKFTSKGEISVK-------VDCLK 467

Query: 412 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 471
            E +++                    F  F                      V+DTG GI
Sbjct: 468 EENKIA--------------------FLNF---------------------EVKDTGIGI 486

Query: 472 PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 531
             E  + IF  F Q   S +R +GGTG+GL+IS  LV  M G+I   SI   GSTF F  
Sbjct: 487 RKEHINTIFKSFSQADASTTRKYGGTGLGLAISSELVKMMGGKIQVESIVGEGSTFKFDV 546

Query: 532 VFG--NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 589
                 G+S       Q+ + +      + +GM  LVVD      K+   ++Q  G+ V 
Sbjct: 547 KLKIVKGASV------QKFDFE------KLRGMNVLVVDDNDNNRKIVVSYLQETGLMVF 594

Query: 590 VVSDQLQCLSQIAS--------GSKIINMILVEQEVWEKDTSVSTL-FVNNLRKLGCGFQ 640
              +    ++ I S         + II+  + +   +E  T++ T+ F  ++        
Sbjct: 595 EAKNAAAAITTIISKANTKNKINTAIIDYQMTDMSAYELATTLKTMPFAKDV-------- 646

Query: 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 700
            KL LLA S++      S+        + KP++   L   +   +G+  +    + E   
Sbjct: 647 -KLILLA-SVNQKGETKSSKEYGFSCYLGKPVKRDDLLNCIAMVLGLKKE----DEEKCE 700

Query: 701 MSLRHLL------LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
           +  +H++      L  KIL+V+DN +N K+    LK +         G +A + +     
Sbjct: 701 VVTKHIVREVKNELKPKILLVEDNVMNRKIVINILKLHDMTCDVAVNGSEALKAV-SEKD 759

Query: 755 FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
           +D  FMD QMP MDG+E T  IR +E +                     H  I+AMTA+ 
Sbjct: 760 YDVVFMDCQMPVMDGYECTAKIRILEGD-------------------KKHTTIIAMTANA 800

Query: 815 IQATYEECLRSGMDGYVSKPFEAEQLYR 842
           ++   E+C+ +GMD Y+SKP   + +++
Sbjct: 801 MEGDSEKCIEAGMDAYISKPINFDTMFK 828


>gi|261251052|ref|ZP_05943626.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891 = ATCC
            33934]
 gi|417955337|ref|ZP_12598357.1| CheY-like receiver [Vibrio orientalis CIP 102891 = ATCC 33934]
 gi|260937925|gb|EEX93913.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891 = ATCC
            33934]
 gi|342813393|gb|EGU48364.1| CheY-like receiver [Vibrio orientalis CIP 102891 = ATCC 33934]
          Length = 1319

 Score =  263 bits (673), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 196/636 (30%), Positives = 311/636 (48%), Gaps = 104/636 (16%)

Query: 221  IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
            ++ +VG +   T  ++ + E     + + K+ A+A   AK +FLA +SHEIRTPMNG+LG
Sbjct: 573  VSGIVGILLDLTERKLMETE-----LRDAKETADAMSRAKGEFLANMSHEIRTPMNGILG 627

Query: 281  MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
            M+ + ++TELD  Q  Y+     S K L+ +IN++LD +K+E GKL +E + F+L  + D
Sbjct: 628  MVHLALNTELDPAQHKYLTRINESAKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFD 687

Query: 341  DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
            ++ ++ S K+Q+K +E  + I  +VP  LIGDP R  Q++ NL GN++KFTE+G + V V
Sbjct: 688  NLTNVISLKAQEKKIEFLLDIEPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVVAV 747

Query: 401  YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 460
                     IE+ TE                                        D++ L
Sbjct: 748  --------RIEMLTE---------------------------------------RDVV-L 759

Query: 461  IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520
              SV+DTG GI  E  + +F  F Q   SI+R  GGTG+GLSISK LV  M G++   S 
Sbjct: 760  HFSVKDTGIGIDKEKIAHLFDAFSQADSSITREFGGTGLGLSISKQLVELMGGQLSVSST 819

Query: 521  PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 580
               GSTF FT   G   +        +M +    ++    G +ALVVD       +    
Sbjct: 820  LGAGSTFAFTITCGLQEA--------KMRDISKPIAG-LAGKRALVVDDNDSARNILVTL 870

Query: 581  IQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640
            +  +    + VS+  + L +I       ++  V+   W          +   +       
Sbjct: 871  LNAMHFDAKAVSNGFEALDEIRRDQ--FDLFFVD---WNMPGLNGIELLQTAQSERLLQH 925

Query: 641  SKLFLL---ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN--KGNIRN 695
            SK FL+      IS  +AN+      + S+I+KP+  S L  ++  + G+ +  + N  N
Sbjct: 926  SKNFLVTAYGREISLDQANSKL----VDSLIVKPVNPSNLLDAIMDSFGIEHVTRDNPTN 981

Query: 696  -WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
             +E P         G+ IL+V+DN VN +VA   LK     V+  E G++A ++L   H 
Sbjct: 982  QFEKPVFD------GQTILLVEDNEVNQEVAIGLLKGTNVNVLTAENGQQAMDML-EQHP 1034

Query: 755  FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
             D   MD+QMP +DG  AT+           +IRR         N +   +PI+AMTA+ 
Sbjct: 1035 VDLVLMDMQMPVLDGVSATE-----------QIRR---------NPNWQQLPIIAMTANA 1074

Query: 815  IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
            +Q+  E C+ +GM+ +++KP     LY+ +S++  P
Sbjct: 1075 MQSDVERCITAGMNSHLAKPINVHNLYKTLSQYLSP 1110


>gi|375104871|ref|ZP_09751132.1| signal transduction histidine kinase [Burkholderiales bacterium
           JOSHI_001]
 gi|374665602|gb|EHR70387.1| signal transduction histidine kinase [Burkholderiales bacterium
           JOSHI_001]
          Length = 812

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 192/629 (30%), Positives = 291/629 (46%), Gaps = 98/629 (15%)

Query: 237 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 296
           A VE     +   K  AE A  AKS FLA +SHEIRTPMNGVLGMLD+L DT L   Q+ 
Sbjct: 259 ATVERRTQELRLAKDAAEDASRAKSAFLANMSHEIRTPMNGVLGMLDLLRDTRLSERQRH 318

Query: 297 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 356
           +  TA +SG+AL++++N++LD +K+E+G++ LE   F L  ++DD L LF+  +Q KGVE
Sbjct: 319 FADTAHSSGEALLAILNDILDFSKIEAGRMALEHAPFELAPLVDDALGLFARDAQAKGVE 378

Query: 357 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 416
           L   +   +PE L+GDP R RQI+TNL+ N++KFT +G +               V+  L
Sbjct: 379 LLAQVDAALPEHLLGDPLRLRQILTNLLSNAVKFTARGEVI--------------VQARL 424

Query: 417 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476
            S  +   G P       W                        L ++V D+G G+     
Sbjct: 425 DSGTD---GAP-------W------------------------LALAVRDSGVGMDAPTL 450

Query: 477 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536
           +R+F  F Q   S +R +GGTG+GL+I + L   M GE+   S P  GSTFT        
Sbjct: 451 ARVFDAFSQADVSTTRRYGGTGLGLTICRRLASLMGGELVATSTPGAGSTFTLRLPLAEA 510

Query: 537 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              S          +P + +    G+KALVVD      ++  + +Q +G+        L+
Sbjct: 511 PDGS---------ARPAAPAGMPPGLKALVVDDNATGREILLHQLQGMGLAAHSAHGGLE 561

Query: 597 CLSQ----IASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 652
            L+Q    +  G     ++L ++       +V      + R     F      +  S+  
Sbjct: 562 ALAQLNGAVREGRPYELLVLDDRMPGMTGRAVVRALRGDAR-----FADLPIAMLTSVDD 616

Query: 653 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL--PSM--SLRHLLL 708
            R + +    ++ + + KP+R   L  +L R +  G     R   L  PS+   L     
Sbjct: 617 RR-DDALGPDAVQAWLTKPVRRKTLHETLLR-LAAGGAAPSRPAPLGEPSVLGGLDDAPR 674

Query: 709 GR---------KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 759
            R         ++L+ +D+ VN  VA   L+  G   V    G++A         FD   
Sbjct: 675 ARDGGPSATRPRVLLAEDHPVNQLVAQTRLRELGCDTVLATNGREAVARWR-EGGFDLVL 733

Query: 760 MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
           MD  MPE+DGF+AT+ IR +E    +  R                 PI+A+TA+ +    
Sbjct: 734 MDCHMPELDGFDATREIRALEGPSGDGRR----------------TPIIALTANAMAGDR 777

Query: 820 EECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           E CL +GMD ++ KPF  +QL   + R+ 
Sbjct: 778 ERCLAAGMDEHLPKPFTRDQLQAALQRWL 806


>gi|145300783|ref|YP_001143624.1| two-component system hybrid sensor histidine kinase/response
           regulator protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|418361336|ref|ZP_12961991.1| two-component system hybrid sensor histidine kinase/response
           regulator protein [Aeromonas salmonicida subsp.
           salmonicida 01-B526]
 gi|142853555|gb|ABO91876.1| two-component system hybrid sensor histidine kinase/response
           regulator protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|356687366|gb|EHI51948.1| two-component system hybrid sensor histidine kinase/response
           regulator protein [Aeromonas salmonicida subsp.
           salmonicida 01-B526]
          Length = 890

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 188/602 (31%), Positives = 284/602 (47%), Gaps = 92/602 (15%)

Query: 253 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
           AE+A  AKS FLA +SHEIRTPMN +LGM  + + T LD  Q DYV   Q S + L+ +I
Sbjct: 153 AESATRAKSDFLANMSHEIRTPMNAILGMAHLALQTRLDPQQADYVGKIQRSAQHLLGII 212

Query: 313 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
           N++LD +K+E+GKL+LE + F+L  +L+++ +L   K++ KG+EL   +  ++   L GD
Sbjct: 213 NDILDFSKIEAGKLDLEQIEFDLDHVLENLATLVGEKAEAKGIELLFEVDHQLDTLLYGD 272

Query: 373 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 432
           P R  QI+ N   N++KFTE+G I V V  +E++             K  L         
Sbjct: 273 PLRLGQILINYANNAVKFTEQGEILVKVTCLEKL------------PKEVL--------- 311

Query: 433 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492
                                      L  SV+DTG G+  E Q R+F  F Q   S +R
Sbjct: 312 ---------------------------LHCSVQDTGIGMSQEQQQRLFQSFQQADSSTTR 344

Query: 493 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 552
            +GGTG+GL+IS+ L   M GE+G  S P  GSTF FTA  G G   S            
Sbjct: 345 KYGGTGLGLAISRELAALMGGEVGVQSEPGKGSTFWFTARLGRGRYRSR----------- 393

Query: 553 NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMIL 612
              S + +G + LV D       +    ++ +   V+      Q L  IAS  +  N   
Sbjct: 394 YLPSLDLRGRRMLVADDSASARTILAALLRSMSFVVDTAESGQQALQMIASAEQEGNAY- 452

Query: 613 VEQEVWEKDTSVSTL--FVNNLRKLGCGFQSKLF-LLANSISSSRANTSTDGVSIPSVIM 669
              EV   D  +  L       R +  G   +L+ ++                    V++
Sbjct: 453 ---EVVLLDWHMPGLDGIETGRRLIARGLGKRLYRVMVTGYGREEVFREAQSAGFDRVLV 509

Query: 670 KPLRSSMLAASLQRAMGV-GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
           KP+ +S+L  ++   +G+ G++      + P  +  +   G +IL+ +DN +N +VA   
Sbjct: 510 KPVCASVLFDTI---IGLFGHQTTAITLKPPQPTHSYRFDGLRILLAEDNELNQQVAMEL 566

Query: 729 LKRYGAAVVCVERGKKATELLMPPHQ-FDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787
           L+  GA V     G  A  L M   Q +D   MD+QMP MDG  AT+ +R+ E +     
Sbjct: 567 LRAVGADVSIA--GNGAIALQMAAQQPYDLILMDMQMPVMDGLAATRQLRQQESD----- 619

Query: 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                            +PILAMTA+V+    E CL +GMD +++KP + ++LY  + R+
Sbjct: 620 --------------GHQIPILAMTANVMAGDRERCLAAGMDDHIAKPIDPDKLYAALQRW 665

Query: 848 FP 849
            P
Sbjct: 666 VP 667


>gi|268317258|ref|YP_003290977.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334792|gb|ACY48589.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 1346

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 206/701 (29%), Positives = 329/701 (46%), Gaps = 138/701 (19%)

Query: 199  CRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMME--------LK 250
             RF+   P+   A   ++ + ++  LVG I +  + RI + +E    +++         K
Sbjct: 726  ARFEITPPFWQTAWFAALMVTLLGLLVGGIHRYRIYRIEQQKEQLEALVQERTAELQAQK 785

Query: 251  KKAEA---------------------ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE 289
            ++ EA                     A   KS+FLA +SHEIRTPMNGVLGM ++L++ +
Sbjct: 786  RQLEATLEDLRRTKEELERANEELVRASRLKSEFLANMSHEIRTPMNGVLGMTELLLEMD 845

Query: 290  LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGK 349
            L   Q++ V     SG+ L++++N++LD +K+E+G+LELE + FNL+  ++DV++LF+ +
Sbjct: 846  LTKEQRECVEIIHRSGETLLTILNDILDFSKIEAGRLELENIDFNLQETIEDVITLFAPR 905

Query: 350  SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 409
            +  K +EL  +I +R  E + GDP R RQ+++NL+GN+IKFTE+G          EVV  
Sbjct: 906  AAAKQLELICFIEERALE-VQGDPHRLRQVLSNLIGNAIKFTERG----------EVV-- 952

Query: 410  IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469
              VE EL           + +R   W+                         +SV DTG 
Sbjct: 953  --VEAELER---------LDERRAHWR-------------------------ISVRDTGI 976

Query: 470  GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 529
            GIP +  S +F PF Q+  S +R +GGTG+GL+ISK LV  M G IG  S    GSTFT 
Sbjct: 977  GIPPDRLSHLFQPFTQLDGSTTRRYGGTGLGLAISKQLVEMMGGTIGVESEVGKGSTFTV 1036

Query: 530  TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 589
               F           S Q     +   +  + ++ L+VD      ++ R       +   
Sbjct: 1037 RIPF---------RLSSQRKLNGDERRALLKDVRVLIVDDNEANREILRRQTLGWDMVPT 1087

Query: 590  VVSDQLQCLSQIASGSK--------IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641
            +     + L  + + ++        I++M++ E +          +    +++      +
Sbjct: 1088 LARSGPEALEMMRAAARQGHPFELAILDMMMPEMD--------GIMLAREIKQDPSLADT 1139

Query: 642  KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR------- 694
             L LL++ + +   + + D     +V+ KP R S L  +L R +                
Sbjct: 1140 PLILLSSYLFTREDHRAMDETLFAAVLSKPTRQSYLFNTLVRVLQESRPVAAAKQQAQQD 1199

Query: 695  --------NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT 746
                    +   PS + R    G  +L+ +DN VN KVA   L+R G     V  GK+A 
Sbjct: 1200 ESAATPSDSSATPSPTPRPAGRG-HLLLAEDNPVNQKVALYHLERLGYTCDVVGDGKQAV 1258

Query: 747  ELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVP 806
            E  +    +DA  MD+ MP MDGFEAT  IRE E        RG             H P
Sbjct: 1259 EAAL-RGGYDAILMDVHMPVMDGFEATAQIREREAE------RGR------------HTP 1299

Query: 807  ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
            I+AMTA+ ++   E CL +GMD Y++KPF+ ++L   + R+
Sbjct: 1300 IIAMTANALRGERERCLEAGMDDYIAKPFKKDELKAVLERW 1340


>gi|192288750|ref|YP_001989355.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris TIE-1]
 gi|192282499|gb|ACE98879.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris TIE-1]
          Length = 636

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 186/605 (30%), Positives = 297/605 (49%), Gaps = 101/605 (16%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           ++  ++ A+AA+ AKS+ LA  SHEIRTP+NG++GM  +L+DT L   Q  Y +  + SG
Sbjct: 109 LIAARESADAANHAKSRLLAMASHEIRTPLNGIIGMSRLLLDTPLSAEQATYAKAVKTSG 168

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
           +AL++L +E+LD A++E+GK+EL+   F L ++++D++ L + ++Q +G+E+A  I +R+
Sbjct: 169 EALLALTDELLDYARIEAGKIELDCRPFVLSSLIEDIIELLAPRAQARGLEIAADIDERL 228

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
           P +LIGD  R RQ++ NL GN+IKFTE G + + V                         
Sbjct: 229 PVSLIGDAARLRQVLLNLCGNAIKFTETGGVALIV------------------------- 263

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
               +R     G +                      + V DTG GI  +AQ+RIF  F Q
Sbjct: 264 ----ERGDQSDGLR----------------------IIVRDTGIGIAPDAQARIFHEFEQ 297

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               I+R  GGTG+GLSIS  +V  M G I   S P  GSTFT T        ++ +H+ 
Sbjct: 298 ADAGIARNFGGTGLGLSISDRIVSVMGGRIALESKPGEGSTFTITLPL-----SAADHDR 352

Query: 546 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
                 P     +  G   ++V P  + A ++   ++R G +  +  D    ++++   S
Sbjct: 353 ATAAFAP----PDLHGSSVMIVSPHGVEASLAARRLERWGAETCLCDDLAAAIARLPERS 408

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD-GVSI 664
              + +L++   +  DT + TL    L +       +L +L     ++R     D   + 
Sbjct: 409 --WHAVLIDH-AFGTDT-IETLARKALPR----ATHRLVML---TPAARHELLPDLPAAF 457

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP-----SMSLRHLLLGRKILIVDDNN 719
              ++KPLR++ LAA L  A+ V    +I + + P     S ++ H      IL+ +DN+
Sbjct: 458 TGYLVKPLRAASLAARLGTAVEVAAP-SIADGDPPPVQDASSAITHEAFA--ILVAEDND 514

Query: 720 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ----FDACFMDIQMPEMDGFEATKI 775
           +N  +  A L R G     V  G++A E           FD   MD+QMP +DG  A + 
Sbjct: 515 INALLIRALLHRLGHHAEIVGDGRRAVEAWGAADNTGTPFDLVLMDVQMPILDGLAAARQ 574

Query: 776 IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
           IR +E     R R                VPILA+TA+ +    E CL SGMDG++ KP 
Sbjct: 575 IRTLE---AERARS--------------RVPILALTANTLAEDREACLESGMDGFLVKPI 617

Query: 836 EAEQL 840
           + ++L
Sbjct: 618 DPDRL 622


>gi|302879489|ref|YP_003848053.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
            ES-2]
 gi|302582278|gb|ADL56289.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
            ES-2]
          Length = 1179

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 186/604 (30%), Positives = 294/604 (48%), Gaps = 102/604 (16%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            ++  K+ AEAA  AK  FLAT+SHEIRTPMNG++GM ++ +DTE+   Q++Y+   ++S 
Sbjct: 544  LLRAKESAEAASRAKGDFLATMSHEIRTPMNGIIGMTELALDTEMSAEQREYLNMVKSSA 603

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
             AL+++IN++LD +K+ESGK+ELE+V F++R +        + ++  KG+EL   +   +
Sbjct: 604  DALLTIINDILDFSKIESGKMELESVEFDVRNLFASAEKTLAIRAAQKGLELVYDVDGAI 663

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P+ L+GDPGR RQ++TNL+GN+IKF+E G I + + L+ +  D + V  E++       G
Sbjct: 664  PDLLVGDPGRLRQVLTNLLGNAIKFSEHGAITLRMKLLMQTSDGLCVRIEVADQG---IG 720

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
             PV    H                                             IF  F Q
Sbjct: 721  IPVDKLAH---------------------------------------------IFEAFTQ 735

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               S +R +GGTG+GL+IS  LV  M G++   S   IGS F FT               
Sbjct: 736  ADTSTTRKYGGTGLGLAISSKLVAAMGGDLSVESQVGIGSVFGFTTTLPVAL-------- 787

Query: 546  QQMNNQPNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV---VSDQLQCLSQI 601
                NQP+ +S E    + AL+VD      K+    I++ G++  V    S+ +  L + 
Sbjct: 788  ----NQPSEISCESLVNLSALIVDDNATNCKLLSQQIKKWGMRPTVAGSASEGMAMLREA 843

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS-TD 660
                   +++L++  + + D      F   L+ +    ++ + +L  S +S RA+     
Sbjct: 844  QQEQAPFDLLLLDAVLSDAD---GFDFAAQLQSMPQKPRALVMML--SSASLRADAERCR 898

Query: 661  GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
               I + + KP+    L  +++ A+G+    ++     P  S   L     IL+ +DN V
Sbjct: 899  QAGISNYLSKPIDRWELIKTIKAALGL-QVDDVFVQTAPLASAHSL----NILLAEDNRV 953

Query: 721  NLKVAAAGLKRYGAAVVCVERGKKATELLMPPH----QFDACFMDIQMPEMDGFEATKII 776
            N K+A   L ++G  VV    G +A E     H     FD   MD+QMPEM G EAT++I
Sbjct: 954  NQKLAITLLGKWGHRVVLANNGIEAVE-----HAGRVDFDVILMDLQMPEMSGMEATRLI 1008

Query: 777  REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
            RE +        RG             H  I+AMTA+ +    + CL +GMD Y++KP  
Sbjct: 1009 REQDQ------LRGR------------HSRIVAMTANAMSEDRQRCLDAGMDDYIAKPLN 1050

Query: 837  AEQL 840
             E+L
Sbjct: 1051 TEKL 1054


>gi|88857797|ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
 gi|88820994|gb|EAR30806.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
          Length = 1235

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 201/656 (30%), Positives = 319/656 (48%), Gaps = 120/656 (18%)

Query: 216 IGILVIA--SLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRT 273
           +GIL  A  S+   IF    N   KV E    ++E +KKAE+A  AKS FLA +SHE+RT
Sbjct: 436 VGILANAFKSMATRIFDYNTNLEQKVSERTSELVEARKKAESASKAKSNFLAHMSHEVRT 495

Query: 274 PMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 333
           PMN ++G+  +++ T+L+  Q+D++    +S   L++ +N+VLD +K+E+ KL L+   F
Sbjct: 496 PMNAIIGLSQLMLKTQLNKRQRDFMEKVLSSSDVLLNTLNDVLDYSKIEANKLTLDYTPF 555

Query: 334 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK 393
           ++R +L  V ++ + K+Q KGVEL + I  +VP   IGDP R  QI+ NL  N++KFTE+
Sbjct: 556 DIRDVLRRVTNISAYKAQYKGVELLLDIDQKVPFQWIGDPIRLGQILINLASNAVKFTEQ 615

Query: 394 GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 453
           G + + V L+E+                                    NQ  +       
Sbjct: 616 GEVIIRVKLLEQ-----------------------------------HNQQST------- 633

Query: 454 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKG 513
                 L  SV DTG GI  E  + +FTPFMQ+  SI+R +GGTG+GL+IS+ L   M G
Sbjct: 634 ------LRFSVIDTGIGIEQERINLLFTPFMQMDSSITRKYGGTGLGLAISRQLTELMGG 687

Query: 514 EIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIR 573
            I   S  N+GS F FT        T N+  S++    P    +  +GM+ALVVD   + 
Sbjct: 688 RIWVESQLNVGSQFHFTCKL-----TLND--SEKTPLMP--FHNRLKGMRALVVDDNAMA 738

Query: 574 AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVN-NL 632
            +V    +  LG++V  V+D    + ++             ++   K T    +F++ N+
Sbjct: 739 REVLADILTSLGLEVTTVADGYAGIDEL-------------EKACSKQTPYDVVFLDWNI 785

Query: 633 RKL-GCGFQSKL-----------FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAAS 680
             + G    SK+            L+  +    +  +    V+I  +I KP+ +S +  +
Sbjct: 786 PGINGVETASKIERNVHITKPAAMLMVTAYDVDKFESDAHNVNIKKIISKPVDASCIHDN 845

Query: 681 L---------QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKR 731
           L          R      + N+ N  L   +LR     +K+LIVDD+ +N +VA+  L  
Sbjct: 846 LVEIFFQEKTSRTCAQKRELNLNN-SLDLSALR----DKKVLIVDDSILNREVASEFLLD 900

Query: 732 YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 791
            G  V     G++A +++   H +D   MD+QMP MDG  ATK +R              
Sbjct: 901 VGIQVSTANNGQQALDMINQYH-YDLVLMDVQMPVMDGLTATKQLR-------------- 945

Query: 792 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                 +N  +  +PI+AMTA      Y   L +GM+ +++KP + + LY  V+R+
Sbjct: 946 ------KNPLHKQLPIIAMTAHASADDYRRSLDAGMNDHLNKPIDHQLLYLTVTRW 995


>gi|392553976|ref|ZP_10301113.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas undina
           NCIMB 2128]
          Length = 945

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 185/606 (30%), Positives = 288/606 (47%), Gaps = 96/606 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A+  KS FLA +SHE+RTP+NGV+G    L  T L+  Q+DY+ T + S  +L+
Sbjct: 297 KKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKTPLNKNQKDYLDTIELSANSLL 356

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++I+++LD +K+E+G +ELE++ F LR  +++V++L +  + DK +EL++YI+ +VP+ L
Sbjct: 357 TIISDILDFSKLEAGAMELESIQFQLRDSVNEVMTLLAPSAHDKQLELSIYINPQVPDHL 416

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTV--YLVEEVVDSIEVETELSSSKNTLSGYP 427
            GDP RF+Q++ NL+ N+IKFTEKG I V +   L++E   SI                 
Sbjct: 417 TGDPTRFKQVLINLLSNAIKFTEKGAIKVDISHRLLDEERTSI----------------- 459

Query: 428 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487
                                            +VSV DTG GIP + Q  +FT F Q  
Sbjct: 460 ---------------------------------LVSVADTGVGIPADKQDALFTAFGQAD 486

Query: 488 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 547
            SI+R  GGTG+GL I+K++V  M G I   S P  G+ FTF  VF          N   
Sbjct: 487 SSITRKFGGTGLGLIITKHIVEAMNGRITLNSAPGSGTCFTFNGVF-------RLPNHVF 539

Query: 548 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 607
           +N+ P   +    G + L ++P           +Q   I V     + + L  I      
Sbjct: 540 INDLP---TQSLIGKRVLYLEPHKHTHHAVVSLLQEWKISVTRCHSESEFLECIEKSEIN 596

Query: 608 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
            ++ L+       D      +V  +R+        L+L+ N++S +       G    + 
Sbjct: 597 FDICLIGHMASVDDMQRLKSYVKAVRE----STDYLYLMLNTVSHNMREAFI-GSGADAC 651

Query: 668 IMKPLRSSMLAASLQRAMGVGNKG-NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
           + KPL    L   L     + +   NI   E         LL  K+L+VDDN+ NLK+  
Sbjct: 652 LSKPLNHRKLCELLAAPYRLDHPAHNIDQHE-------QTLLPLKVLVVDDNDANLKLIY 704

Query: 727 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
             L      +     G +A   L   H++D  FMDIQMP MDG  A K+I+E   N +  
Sbjct: 705 TLLNEQVELIDTAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDGITACKLIKESSLNED-- 761

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
                              PI+A+TA  + +  E+ L+ G +GY++KP + + L + +  
Sbjct: 762 ------------------TPIIAVTAHALNSEKEQLLKDGFEGYLTKPIDEDMLNQIICD 803

Query: 847 FFPPIP 852
             P +P
Sbjct: 804 HSPQLP 809


>gi|334119823|ref|ZP_08493907.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
 gi|333457464|gb|EGK86087.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
          Length = 1702

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 200/622 (32%), Positives = 306/622 (49%), Gaps = 88/622 (14%)

Query: 243  YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQ 302
            +    + ++ A  A   KS FLA +SHEIRTPMNGV+GM D+L+ T L   Q D+V+T +
Sbjct: 1006 FEQAQQAREAALEASRMKSLFLANMSHEIRTPMNGVMGMTDLLLKTNLTPEQIDFVQTLK 1065

Query: 303  ASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 362
             SG+ L+S+IN++LD +K+E+G++ LE + FNL   +++VL L +  +Q+KG+E+   I 
Sbjct: 1066 LSGQNLLSIINDILDLSKLEAGEMRLEILEFNLSICMNEVLDLLATPAQEKGIEVVALID 1125

Query: 363  DRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNT 422
              VP  + GD  R RQI+TNL+ N+IKFTE G + +      EV D+      L++S N 
Sbjct: 1126 TDVPLQIKGDAARLRQILTNLINNAIKFTEAGEVVI------EVADASNPGL-LAASDNQ 1178

Query: 423  LSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 482
                            K   +     P K  + D + L+  V DTG GI  E Q ++F  
Sbjct: 1179 ----------------KILEK---IEPLKIENNDSMLLLFKVTDTGIGIATEDQKKLFQS 1219

Query: 483  FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT--AVFGN--GSS 538
            F QV  S +R +GGTG+GL+ISK LV  M G+IG  S P  GSTF FT   V  N  G  
Sbjct: 1220 FTQVDASTTRKYGGTGLGLAISKELVELMGGQIGVESTPGQGSTFWFTVPTVKENLTGVG 1279

Query: 539  TSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QL 595
            T+ E N          + +   G K L+   +P   KV        G++VE V +    +
Sbjct: 1280 TACEVN----------LETVLAGRKMLIASDKPTVRKVLVRMAVVWGMEVEEVENGWMTI 1329

Query: 596  QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG----FQSKLFLLANSIS 651
              L +  S +   +++LV       D  +  +   +L +L        Q+K  +L +   
Sbjct: 1330 ASLYKAVSLNSPYDIVLV-------DIQLPEMVAGSLERLRISEPAMQQTKWVVLTSMTQ 1382

Query: 652  SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG------------VGNKGN-IRNWEL 698
             + A    D       + KP+++  L   L  A+               N+ + I N +L
Sbjct: 1383 LAEAKRLVDS-GFSGYLTKPVKAHRLFDCLANAIAPSTLIDESQANPTSNRASAIDNRDL 1441

Query: 699  PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
             S+         KIL+V+D  +N KV    L+  G A      G +A  ++    ++D  
Sbjct: 1442 ASL---------KILLVEDTPINQKVGLNQLRVLGCAADVANNGAEALSMV-ALKKYDIV 1491

Query: 759  FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
             MD QMP +DG+EAT  +R +E             + A +  S+    ++AMTA+ ++  
Sbjct: 1492 LMDCQMPVLDGYEATLQLRGLEA----------ADLAAGKMESHQKTVVIAMTANALKGD 1541

Query: 819  YEECLRSGMDGYVSKPFEAEQL 840
             E+CL +GMD Y+SKP   E+L
Sbjct: 1542 REKCLAAGMDDYISKPISIEKL 1563



 Score = 39.3 bits (90), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 30/157 (19%)

Query: 701  MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG-------KKATELLMPPH 753
            ++L  +L GRK+LI  D     KV       +G  V  VE G        KA  L  P  
Sbjct: 1284 VNLETVLAGRKMLIASDKPTVRKVLVRMAVVWGMEVEEVENGWMTIASLYKAVSLNSP-- 1341

Query: 754  QFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD 813
             +D   +DIQ+PEM       +   +E     R+R  E +++  + V         +T+ 
Sbjct: 1342 -YDIVLVDIQLPEM-------VAGSLE-----RLRISEPAMQQTKWV--------VLTSM 1380

Query: 814  VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
               A  +  + SG  GY++KP +A +L+  ++    P
Sbjct: 1381 TQLAEAKRLVDSGFSGYLTKPVKAHRLFDCLANAIAP 1417


>gi|359437632|ref|ZP_09227689.1| two-component system, NarL family, sensor histidine kinase BarA
           [Pseudoalteromonas sp. BSi20311]
 gi|358027674|dbj|GAA63938.1| two-component system, NarL family, sensor histidine kinase BarA
           [Pseudoalteromonas sp. BSi20311]
          Length = 941

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 185/606 (30%), Positives = 288/606 (47%), Gaps = 96/606 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A+  KS FLA +SHE+RTP+NGV+G    L  T L+  Q+DY+ T + S  +L+
Sbjct: 297 KKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKTPLNKNQKDYLDTIELSANSLL 356

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++I+++LD +K+E+G +ELE++ F LR  +++V++L +  + DK +EL++YI+ +VP+ L
Sbjct: 357 TIISDILDFSKLEAGAMELESIQFQLRDSVNEVMTLLAPSAHDKQLELSIYINPQVPDHL 416

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTV--YLVEEVVDSIEVETELSSSKNTLSGYP 427
            GDP RF+Q++ NL+ N+IKFTEKG I V +   L++E   SI                 
Sbjct: 417 TGDPTRFKQVLINLLSNAIKFTEKGAIKVDISHRLLDEERTSI----------------- 459

Query: 428 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487
                                            +VSV DTG GIP + Q  +FT F Q  
Sbjct: 460 ---------------------------------LVSVADTGVGIPADKQDALFTAFGQAD 486

Query: 488 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 547
            SI+R  GGTG+GL I+K++V  M G I   S P  G+ FTF  VF          N   
Sbjct: 487 SSITRKFGGTGLGLIITKHIVEAMNGRITLNSAPGSGTCFTFNGVF-------RLPNHVF 539

Query: 548 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 607
           +N+ P   +    G + L ++P           +Q   I V     + + L  I      
Sbjct: 540 INDLP---TQSLIGKRVLYLEPHKHTHHAVVSLLQEWKISVTPCHSESEFLECIEKSEIN 596

Query: 608 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
            ++ L+       D      +V  +R+        L+L+ N++S +       G    + 
Sbjct: 597 FDICLIGHMASVDDMQRLKSYVKAVRE----STDYLYLMLNTVSHNMREAFI-GSGADAC 651

Query: 668 IMKPLRSSMLAASLQRAMGVGNKG-NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
           + KPL    L   L     + +   NI   E         LL  K+L+VDDN+ NLK+  
Sbjct: 652 LSKPLNHRKLCELLAAPYRLDHPAHNIDQHE-------QTLLPLKVLVVDDNDANLKLIY 704

Query: 727 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
             L      +     G +A   L   H++D  FMDIQMP MDG  A K+I+E   N +  
Sbjct: 705 TLLNEQVELIDTAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDGITACKLIKESSLNED-- 761

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
                              PI+A+TA  + +  E+ L+ G +GY++KP + + L + +  
Sbjct: 762 ------------------TPIIAVTAHALNSEKEQLLKDGFEGYLTKPIDEDMLNQIICD 803

Query: 847 FFPPIP 852
             P +P
Sbjct: 804 HSPQLP 809


>gi|383761056|ref|YP_005440038.1| putative two-component hybrid sensor and regulator [Caldilinea
            aerophila DSM 14535 = NBRC 104270]
 gi|381381324|dbj|BAL98140.1| putative two-component hybrid sensor and regulator [Caldilinea
            aerophila DSM 14535 = NBRC 104270]
          Length = 1523

 Score =  263 bits (671), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 198/609 (32%), Positives = 307/609 (50%), Gaps = 92/609 (15%)

Query: 248  ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            EL  +AE A+ AKS+FLA +SHEIRTPMNGV+GM  +L++TEL+  Q+ YV T ++SG+ 
Sbjct: 994  ELAAQAEQANRAKSEFLANMSHEIRTPMNGVIGMTGLLLETELNEEQRRYVETIRSSGET 1053

Query: 308  LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
            L+++IN++LD +K+E+GKLELE + F+L  +LDD  +  + K+Q+K +E         P 
Sbjct: 1054 LLAIINDILDISKIEAGKLELETLDFDLIDLLDDFAATLAVKAQEKRLEFICAADPETPR 1113

Query: 368  TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 427
             L GDPGR RQ++TNL  N+++FTEKG + V V                           
Sbjct: 1114 HLRGDPGRLRQVLTNLAANALRFTEKGEVSVRV--------------------------- 1146

Query: 428  VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487
                                SP + +  D + L   V DTG GIP E    IF  F+QV 
Sbjct: 1147 --------------------SPVRMTEGD-VTLRFVVRDTGIGIPKEKLPSIFEKFVQVD 1185

Query: 488  PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 547
             S +R +GGTG+GL+ISK LV  M GEIG  S    GSTF FT      S          
Sbjct: 1186 ASTTRRYGGTGLGLAISKRLVELMGGEIGVESEVGRGSTFWFTVKLLRQSGV-------- 1237

Query: 548  MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSDQLQCLSQIASG 604
               Q  S+     G++ L+VD      ++ R  +   G++    E  +  L+ L +    
Sbjct: 1238 --EQKPSLPDTLHGIRVLIVDDNATNREILRTQLSAWGMEPDEAEDAAAALRKLEEALQE 1295

Query: 605  SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             K   + +++ ++ E D     + +    +    F+S   ++ +S+       +      
Sbjct: 1296 GKPYRLAILDLQMPEID----GIMLGRQIRSDERFRSLELIMMSSMGQDGEARNVLNNGF 1351

Query: 665  PSVIMKPLRSSMLAASL-----QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 719
             + +MKP+R S L  ++     Q A+ +G K +     +P +S  ++    ++L+ +DN 
Sbjct: 1352 AAYLMKPVRQSDLFNTVRQVLAQNALRLGGKSSENKPVIPKLSTPNV----RVLVAEDNA 1407

Query: 720  VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
            VN +VA   L+R GA    V  G ++ E L     +D   MD+QMP+MDG EAT+     
Sbjct: 1408 VNQQVALGILRRMGAHAEVVGSGAESIEALQQA-PYDIVLMDVQMPDMDGLEATR----- 1461

Query: 780  EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
                  RIR GE    A +      +PI+AMTA  +Q+  + CL +GM+ YVSKP   ++
Sbjct: 1462 ------RIRNGEAGETARD------IPIIAMTAHALQSDRDRCLAAGMNDYVSKPVRPQE 1509

Query: 840  LYREVSRFF 848
            L++ + ++ 
Sbjct: 1510 LHQVLEKWL 1518


>gi|116624414|ref|YP_826570.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
 gi|116227576|gb|ABJ86285.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
          Length = 1349

 Score =  263 bits (671), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 206/670 (30%), Positives = 326/670 (48%), Gaps = 111/670 (16%)

Query: 201  FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHG--MMEL---KKKAEA 255
            F    PWP       +G L + S VG      +  +A ++    G  ++EL   K++AEA
Sbjct: 724  FAFAVPWPWF---RQLGFLALLS-VGSCAIIVLACVAAIQYRRRGSLILELNRAKEQAEA 779

Query: 256  ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEV 315
            A   K++FLA +SHEIRTPMNGV+GM  +L+DTEL   Q+DY  T + SG++L++LIN++
Sbjct: 780  ASRHKTEFLANMSHEIRTPMNGVIGMTGLLLDTELTTEQRDYAGTVRRSGESLLTLINDI 839

Query: 316  LDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGR 375
            LD +KVE+GKL +EA +F+LR+ +++V  + + K +++ ++L +      P   +GD GR
Sbjct: 840  LDFSKVEAGKLAIEASAFDLRSTIEEVDEMLAPKIENRKLDLVLQYPVGAPRHFVGDAGR 899

Query: 376  FRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSW 435
             RQ++TNL+GN+IKFT +G I +      EVV                        C S 
Sbjct: 900  IRQVVTNLVGNAIKFTGEGSIVI------EVV------------------------CES- 928

Query: 436  KGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 495
                   QD + +  +          V++ DTG GIP E    +F  F Q+  S +R +G
Sbjct: 929  -------QDEARAVMR----------VAIHDTGPGIPSEKIGSLFEKFSQLDGSTTRKYG 971

Query: 496  GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSV 555
            GTG+GL+ISK LV  M G +   S    GSTF+FT      +++  E  +          
Sbjct: 972  GTGLGLAISKQLVSLMGGSMAVSSRLGEGSTFSFTLPLPLDANSPVEPLT---------- 1021

Query: 556  SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSDQLQCLSQIASGSKIINMIL 612
            ++  +G++AL+VD   I  +V    I   G++        + L  L    +     +  +
Sbjct: 1022 AAGLRGLRALIVDDNEINRRVLHEQIIGWGMRNGSFAAGEEALVALRAAHAAGDPYHFAI 1081

Query: 613  VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS-SRANTSTDGVSIPSVIMKP 671
            ++  +      +  + V    K     +  + +L  S+   S A     G+ + + ++KP
Sbjct: 1082 LDYRM----PGMDGVEVARAIKADDELRETVVVLLTSVGQWSEARQKESGI-VDASLVKP 1136

Query: 672  LRSS----MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR------KILIVDDNNVN 721
            +R S    +L++   R   +     +R  E P   +R  L  R      ++L+ +DN VN
Sbjct: 1137 VRQSQLLNILSSCWVRTNSITAAPAVRP-EPPVNEMRAALALRFGGVPVRVLVAEDNVVN 1195

Query: 722  LKVAAAGLKRYGAAVVCVERGKKATEL--LMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
             KV+A  L + G        G++A  L  L+P   +D  FMD QMPEMDG+ AT+ IR  
Sbjct: 1196 QKVSARMLDKLGIRADVAADGREAVALFGLVP---YDLIFMDCQMPEMDGYAATREIRRR 1252

Query: 780  EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
            E                        VPI AMTA+V+    E CL +GMD ++ KP + E 
Sbjct: 1253 EG-------------------PGRRVPIAAMTAEVLGGCRELCLAAGMDDHIPKPVKMEV 1293

Query: 840  LYREVSRFFP 849
            L+  + R+ P
Sbjct: 1294 LFETLRRWIP 1303


>gi|334129574|ref|ZP_08503378.1| Sensor protein [Methyloversatilis universalis FAM5]
 gi|333445259|gb|EGK73201.1| Sensor protein [Methyloversatilis universalis FAM5]
          Length = 870

 Score =  263 bits (671), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 198/644 (30%), Positives = 302/644 (46%), Gaps = 92/644 (14%)

Query: 221 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
           + S+ G I      R A+VE     ++  K+KAEAA  AKS FLA +SHEIRTPMNG++G
Sbjct: 150 VVSVSGLIGLLDARRQAEVE-----LLRAKEKAEAASRAKSDFLANMSHEIRTPMNGIMG 204

Query: 281 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
           M  +L DT LD  Q++YV   + S  AL+ +IN++LD +K+E+GKL +E V      ++ 
Sbjct: 205 MSALLQDTSLDSEQREYVHAIKTSADALLVIINDILDFSKIEAGKLAIEEVECVPSDLVG 264

Query: 341 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
           +     +  +Q KGVEL   I+  +P  ++GDPGR RQI+ NL+GN++KFTE+G I V  
Sbjct: 265 EAARGLAIGAQQKGVELYCRIAPDLPRRVLGDPGRMRQILVNLIGNAVKFTERGEIEVGC 324

Query: 401 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 460
             V                     G P                        S+  D   L
Sbjct: 325 EAV---------------------GMP------------------------SAVGDHAEL 339

Query: 461 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520
            + V DTG GI    Q+ +F  F Q   S +R  GGTG+GL+I   LV  M G +   S 
Sbjct: 340 HLWVRDTGIGIDAAKQALVFEAFAQADTSTTRRFGGTGLGLAICNRLVSLMGGRLWLEST 399

Query: 521 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 580
           P  GSTF FT       +     + Q+           F G++ L+++  P         
Sbjct: 400 PGQGSTFHFTMRCRVLEAAGLSPHFQR-----------FPGLRVLLIEDHPPSRSAVAAM 448

Query: 581 IQRLG---IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637
           +  +G   + V  V    Q L Q     +  ++++V++ + ++D   +  FV+   + G 
Sbjct: 449 LGDMGASALAVGAVQAARQALRQAHDSGRPFDILMVDRTLPDED---AFDFVSGFCE-GP 504

Query: 638 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 697
              +++ ++ +  + +  N     + +   + KP  +  LA +L  A+      +    +
Sbjct: 505 NRLNRVVMMLSGANQAADNALARSLGVRGRLHKPFSAGELATALTDALSSQPDDSAHELD 564

Query: 698 LPSM---------SLRHLLLG----RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 744
             ++         SL H  LG    R +L+ +DN VN  VA   L+R G  V     G++
Sbjct: 565 DFALTIGDLDIERSLVHSGLGSATVRHVLLAEDNPVNQLVAVRTLERAGYKVTVANNGQE 624

Query: 745 ATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH 804
           A +L+     FD   MD+QMP M G EAT+ IR  E   +  +    V           H
Sbjct: 625 ALDLI-DSESFDVVLMDVQMPVMGGIEATRAIRAREQRRSWVVDTDHVQ----------H 673

Query: 805 VPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           +PI+AMTA+ ++   E CL  GMD YVSKP +AE L   + R  
Sbjct: 674 LPIIAMTANAMKGDRELCLDEGMDDYVSKPVKAEDLLAALERVL 717


>gi|389879451|ref|YP_006381681.1| Signal transduction histidine kinase [Tistrella mobilis KA081020-065]
 gi|388530841|gb|AFK56036.1| Signal transduction histidine kinase [Tistrella mobilis KA081020-065]
          Length = 1577

 Score =  263 bits (671), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 188/619 (30%), Positives = 294/619 (47%), Gaps = 96/619 (15%)

Query: 244  HGMMELKKK---AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRT 300
            H   EL +    AE A   KS FLA +SHEIRTPMN V+GM  + + TEL   Q+DY++ 
Sbjct: 821  HAADELARARDLAEQASRLKSDFLANMSHEIRTPMNAVIGMTHLALKTELTPRQRDYLQK 880

Query: 301  AQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVY 360
             Q +   L+ +IN++LD +K+E+G+LELEAV F L  +L ++ ++   ++++K +E    
Sbjct: 881  IQGAADGLLGIINDILDFSKIENGRLELEAVDFRLDDVLGNLATVIGHRAEEKRLEFIFD 940

Query: 361  ISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSK 420
            ++  VP TL+GDP R  Q++ NL GN++KFTE G + V+V LV                 
Sbjct: 941  VAPDVPGTLLGDPLRLGQVLINLAGNAVKFTETGEVVVSVRLV----------------- 983

Query: 421  NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 480
                                            S AD   L  +V DTG G+  +  S +F
Sbjct: 984  -------------------------------ISDADGHRLRFAVRDTGIGMTPDQMSHLF 1012

Query: 481  TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTS 540
             PF Q   SI+R +GGTG+GLSIS+ LV  M GE+   S P  GS FTF A FG      
Sbjct: 1013 EPFTQADGSITRRYGGTGLGLSISRRLVRMMDGEVTVESTPGAGSVFTFDAAFGR----- 1067

Query: 541  NEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQ 600
            +     ++  +P+      +G+  LV+D  P+  +V    ++ +  +V  V      L  
Sbjct: 1068 SRARWSRITARPD-----LRGLHVLVIDDNPLARQVLTGMLEGMAFRVVAVPSGEAGLEA 1122

Query: 601  IASGSKI---INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 657
            +A G ++    +++L++  +      ++T  +        G      ++  +        
Sbjct: 1123 LARGREVEDPYSLVLLDWRLGAGLDGLATAGLIAQAAAEAGAPVPPIVMITAFGRDDLRQ 1182

Query: 658  STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR---NWELPSMSLRHLLLGRKILI 714
            S +   I +V+ KP  +S L  ++      G   ++R      LP       L G ++L+
Sbjct: 1183 SAEAAGIRAVLGKPFNASTLFDTIMHVFDDGGGDDVRAAATQALPD------LRGGRVLL 1236

Query: 715  VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP---PHQFDACFMDIQMPEMDGFE 771
            V+DN +N +VA   L+  G  V     G+ A + L+    P   D   MD+QMP MDG+E
Sbjct: 1237 VEDNALNQQVALELLEAAGLVVDVETDGRAALDRLVAGPRPPVHDLVLMDLQMPVMDGYE 1296

Query: 772  ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
            AT+ IR                  A   ++N   PI+AMTA  +    + CL +GM+  V
Sbjct: 1297 ATRAIR------------------ATPGLANL--PIVAMTAHALAEERQRCLEAGMNDCV 1336

Query: 832  SKPFEAEQLYREVSRFFPP 850
            +KP + E+L   V+ F  P
Sbjct: 1337 TKPVDPERLMAVVAGFVRP 1355


>gi|193214323|ref|YP_001995522.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
            35110]
 gi|193087800|gb|ACF13075.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
            35110]
          Length = 1629

 Score =  263 bits (671), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 198/617 (32%), Positives = 299/617 (48%), Gaps = 70/617 (11%)

Query: 238  KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
            KVE +   ++E +++A  A  AK++FLA +SHEIRTPMN V+GM  +L+DT L   Q++Y
Sbjct: 909  KVERE---LIEAREEALRAAQAKAEFLANMSHEIRTPMNAVIGMTGLLLDTPLTAEQREY 965

Query: 298  VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
            V T ++SG AL+++IN++LD +K+ESGKLELE   F LR  +++ + +FS  + +K +EL
Sbjct: 966  VETIRSSGDALLTVINDILDFSKIESGKLELEQYPFTLRNAIEECIDIFSATAAEKHLEL 1025

Query: 358  AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-EVVDSIEVETEL 416
              +I ++VP  + GD  R RQI+ NL+ N++KFT+ G + + V L +    ++ E     
Sbjct: 1026 VYFIHEKVPTKVSGDVTRLRQILVNLVSNAVKFTKSGEVVLEVQLQQPREQNADERLMVF 1085

Query: 417  SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476
                +    YP A         + F+    T  F            +V DTG GIP +  
Sbjct: 1086 HDHDDDKYNYPQA-------ALQQFDDKKCTLHF------------TVRDTGIGIPADRL 1126

Query: 477  SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536
             RIF  F QV  S +R +GGTG+GL+ISK+L   M G++   S    GSTF FT      
Sbjct: 1127 ERIFHSFSQVDASTTRKYGGTGLGLTISKHLCELMNGKMWVESELGKGSTFHFTITLERL 1186

Query: 537  SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              T  E+            SS+  G  AL+VD      ++        G+    V     
Sbjct: 1187 PDTKGEY------------SSKLAGKHALIVDDNATNRRILSLQSATWGMSSHTVGSGKN 1234

Query: 597  CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
             L  I SG    ++ +++  + E D     +    LRKL       L +L  S  +    
Sbjct: 1235 ALELIHSGMH-FDVGILDFHMPEMD---GLMLAMELRKLPQTQDLPLVMLT-SAGNRETV 1289

Query: 657  TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR-HLLLGR----K 711
            + T GV   + + KP++ S L   L     V  KG +   E P    +  + L R    +
Sbjct: 1290 SETVGVGFSAFLNKPIKQSQLYDVL---TDVFQKGELPVREKPKPKTKVSIDLAREIPLR 1346

Query: 712  ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
            ILI +DN VN K+    L++ G        G +  E L     +D   MD+QMPEMDG  
Sbjct: 1347 ILIAEDNVVNQKLVLRILEKVGYRADVAANGAEVIEAL-KSKTYDLILMDVQMPEMDGLT 1405

Query: 772  ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVP-ILAMTADVIQATYEECLRSGMDGY 830
            AT+ I                     +N      P I+AMTA+ ++   E CL +GMD Y
Sbjct: 1406 ATRYI--------------------CQNWPRLERPFIIAMTANAMKGDREACLEAGMDDY 1445

Query: 831  VSKPFEAEQLYREVSRF 847
            +SKP   + L + + ++
Sbjct: 1446 LSKPVRFDDLQKALDKW 1462



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 20/142 (14%)

Query: 707  LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
            L G+  LIVDDN  N ++ +     +G +   V  GK A EL+     FD   +D  MPE
Sbjct: 1197 LAGKHALIVDDNATNRRILSLQSATWGMSSHTVGSGKNALELIHSGMHFDVGILDFHMPE 1256

Query: 767  MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG 826
            MDG      +R++    +                    +P++ +T+   + T  E +  G
Sbjct: 1257 MDGLMLAMELRKLPQTQD--------------------LPLVMLTSAGNRETVSETVGVG 1296

Query: 827  MDGYVSKPFEAEQLYREVSRFF 848
               +++KP +  QLY  ++  F
Sbjct: 1297 FSAFLNKPIKQSQLYDVLTDVF 1318


>gi|359445977|ref|ZP_09235687.1| two-component system, NarL family, sensor histidine kinase BarA
           [Pseudoalteromonas sp. BSi20439]
 gi|358040175|dbj|GAA71936.1| two-component system, NarL family, sensor histidine kinase BarA
           [Pseudoalteromonas sp. BSi20439]
          Length = 941

 Score =  263 bits (671), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 185/606 (30%), Positives = 288/606 (47%), Gaps = 96/606 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A+  KS FLA +SHE+RTP+NGV+G    L  T L+  Q+DY+ T + S  +L+
Sbjct: 297 KKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKTPLNKNQKDYLDTIELSANSLL 356

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++I+++LD +K+E+G +ELE++ F LR  +++V++L +  + DK +EL++YI+ +VP+ L
Sbjct: 357 TIISDILDFSKLEAGAMELESIQFQLRDSVNEVMTLLAPSAHDKQLELSIYINPQVPDHL 416

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTV--YLVEEVVDSIEVETELSSSKNTLSGYP 427
            GDP RF+Q++ NL+ N+IKFTEKG I V +   L++E   SI                 
Sbjct: 417 TGDPTRFKQVLINLLSNAIKFTEKGAIKVDISHRLLDEERTSI----------------- 459

Query: 428 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487
                                            +VSV DTG GIP + Q  +FT F Q  
Sbjct: 460 ---------------------------------LVSVADTGVGIPADKQDALFTAFGQAD 486

Query: 488 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 547
            SI+R  GGTG+GL I+K++V  M G I   S P  G+ FTF  VF          N   
Sbjct: 487 SSITRKFGGTGLGLIITKHIVEAMNGRITLNSAPGSGTCFTFNGVF-------RLPNHVF 539

Query: 548 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 607
           +N+ P   +    G + L ++P           +Q   I V     + + L  I      
Sbjct: 540 INDLP---TQSLIGKRVLYLEPHKHTHHAVLSLLQEWKISVTPCHSESEFLECIEKSEIN 596

Query: 608 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
            ++ L+       D      +V  +R+        L+L+ N++S +       G    + 
Sbjct: 597 FDICLIGHMASVDDMQRLKSYVKAVRE----STDYLYLMLNTVSHNMREAFI-GSGADAC 651

Query: 668 IMKPLRSSMLAASLQRAMGVGNKG-NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
           + KPL    L   L     + +   NI   E         LL  K+L+VDDN+ NLK+  
Sbjct: 652 LSKPLNHRKLCELLAAPYRLDHPAHNIDRHE-------QTLLPLKVLVVDDNDANLKLIY 704

Query: 727 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
             L      +     G +A   L   H++D  FMDIQMP MDG  A K+I+E   N +  
Sbjct: 705 TLLNEQVELIDTAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDGITACKLIKESSLNED-- 761

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
                              PI+A+TA  + +  E+ L+ G +GY++KP + + L + +  
Sbjct: 762 ------------------TPIIAVTAHALNSEKEQLLKDGFEGYLTKPIDEDMLNQIICD 803

Query: 847 FFPPIP 852
             P +P
Sbjct: 804 HSPQLP 809


>gi|421495807|ref|ZP_15943063.1| two-component system sensor protein [Aeromonas media WS]
 gi|407185191|gb|EKE58992.1| two-component system sensor protein [Aeromonas media WS]
          Length = 1060

 Score =  263 bits (671), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 212/686 (30%), Positives = 319/686 (46%), Gaps = 103/686 (15%)

Query: 172 GSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWP---LLAISTSI--GILVIASLVG 226
           G   S DGLW  +TL    P + H+ +  +K  +  P   LLAI T I   I V  +++ 
Sbjct: 263 GQMESADGLWSWTTLY---PAQNHD-QLIWKAASLVPRSELLAIRTHIWGSISVTCAMLL 318

Query: 227 HIFQATVNRIAKVEEDYHGMMELKKKAEAADVA--KSQFLATVSHEIRTPMNGVLGMLDM 284
            +F A V  + +         E   + EAA +A  K  F+A +SHEIRTPMN ++G+  +
Sbjct: 319 LLFGAGVAALVRSRR-----REQLAQQEAARLAQVKGDFIANMSHEIRTPMNAIMGLTYL 373

Query: 285 LMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLS 344
           L    LD  Q   VR    +G+AL+ +IN++LD +K+ESG+LELE V F++  +LD V +
Sbjct: 374 LEQGGLDDGQHALVRKIHQAGQALLGIINDILDFSKIESGRLELERVPFSMEEVLDHVAA 433

Query: 345 LFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 404
           + S    +K +EL V  +      LIGD  R  Q++ NL GN+IKFTE+G + V V    
Sbjct: 434 IMSTCVGEKHLELVVSSAPEQVSHLIGDALRLEQVLLNLTGNAIKFTERGEVEVKV---- 489

Query: 405 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSV 464
                 E+E E                           QDG           +  L+  V
Sbjct: 490 ------ELEAE---------------------------QDG-----------MATLLFRV 505

Query: 465 EDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 524
            DTG GIP E Q+ IF  F Q   S SR  GGTG+GL+IS+ LV  M GEIG  S    G
Sbjct: 506 RDTGIGIPPEQQANIFNAFSQADSSTSRRFGGTGLGLTISRRLVNLMGGEIGVTSELGKG 565

Query: 525 STFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL 584
           S F F                 +   +P ++S   Q +  L+ D   +        +  L
Sbjct: 566 SEFWFRVRL-------------EQVERPEALSERLQHISLLIADDNQVTRDALSMTVGSL 612

Query: 585 GIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLF 644
           G Q  VV    Q L  +    +  ++IL++  +   D   + L +   R      +S + 
Sbjct: 613 GWQSRVVESGEQALHHLLRQGERFDVILLDWIMPGMDGLETCLAIR--RAFEQQERSPII 670

Query: 645 LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR 704
           ++A + S            +  V+ KP+  S L  ++ R +    + ++   E     LR
Sbjct: 671 IMATAYSQDELMHRPGSEQVDLVLHKPVTGSSLYNAVARLIH-EKRDHVEPLESGQRRLR 729

Query: 705 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM-PPHQFDACFMDIQ 763
             L G  +L+VDD+++NL+VA   L+R GA V+    G++A   L  P  + D   MD+Q
Sbjct: 730 --LPGVHVLLVDDSDINLEVATRLLQREGAEVITAIDGERALACLADPARRIDLVLMDVQ 787

Query: 764 MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 823
           MP MDG+EAT+ +R++                          P+LA+TA V +   E  L
Sbjct: 788 MPVMDGYEATRRLRQLP--------------------GREETPVLALTAGVFKDQREAAL 827

Query: 824 RSGMDGYVSKPFEAEQLYREVSRFFP 849
            SGM+ +++KP + EQL   + R+ P
Sbjct: 828 ASGMNDFIAKPLDVEQLIATLLRYLP 853


>gi|254443048|ref|ZP_05056524.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198257356|gb|EDY81664.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1320

 Score =  263 bits (671), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 189/599 (31%), Positives = 294/599 (49%), Gaps = 105/599 (17%)

Query: 251  KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 310
            K+A+ A  AKSQFLA +SHEIRTPMNGV+GM  +L DT+L  TQ+DYV T ++S + L++
Sbjct: 805  KEAKKAGQAKSQFLANMSHEIRTPMNGVMGMCTLLNDTQLSNTQRDYVSTIRSSSETLLT 864

Query: 311  LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 370
            +IN++LD +K+E+GKL++E + F+L  +++DVL LFS   + K ++L  +I+  V    I
Sbjct: 865  IINDILDFSKIEAGKLQIETIPFDLVDLVEDVLDLFSQHLEQKKLDLVHHIAASVSTQRI 924

Query: 371  GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 430
            GDP R RQI+ NL+GN+IKFT  G I++++                              
Sbjct: 925  GDPTRIRQILVNLVGNAIKFTTSGDIYISI------------------------------ 954

Query: 431  RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 490
                                  S  D   + + V D+G GI     + +F PF Q   SI
Sbjct: 955  ---------------------ESGDDPDEITIEVRDSGIGIDQRKLNDLFQPFSQEDESI 993

Query: 491  SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 550
            +R +GGTG+GLSISK L   M G +   S   +GS+F FT       S++N         
Sbjct: 994  TRKYGGTGLGLSISKMLAEIMHGRLWAESEIGVGSSFFFTIKTPVDKSSTNTE------- 1046

Query: 551  QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIIN 609
               ++   F+G + LV +P P+        ++   I+ +E +S++  C   +A    I  
Sbjct: 1047 ---AIPENFRGKRILVCEPHPLNRHSLLETLRLWNIEPIEALSEKEAC-KTLAKDHAIDA 1102

Query: 610  MIL-VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 668
            + L    + + K+T      + ++R     ++  + LLA+S       T    V    ++
Sbjct: 1103 LFLGANSDDFTKET------IESIRSEAKRYKLPVVLLASSKLKGEI-TYKPQVDALKIL 1155

Query: 669  MKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KILIVDDNNVNLKVAA 726
             KPLR   L  +L        K  ++N +  +  L+ +   +  +IL+V+DN VN KVA 
Sbjct: 1156 AKPLRRKQLKRAL--CFFFDKKTTVKNAKRSTRVLKKIPNSKSLRILVVEDNPVNQKVAR 1213

Query: 727  AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
              LKR G  +     G +  E +   H +D   MD+QMPEMDG EAT+ IR++       
Sbjct: 1214 LLLKRLGFQIDLAGNGIEGVESVTRQH-YDIVLMDVQMPEMDGLEATRQIRKL------- 1265

Query: 787  IRRGEVSIEAYENVSNFHVP-----ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                             H+P     I AM+A V +   +EC  +GM+G++ KP + E L
Sbjct: 1266 -----------------HLPDGQPAIFAMSAGVSEYDKKECFDAGMNGFIPKPVKVETL 1307


>gi|325110166|ref|YP_004271234.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
 gi|324970434|gb|ADY61212.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
          Length = 1273

 Score =  262 bits (670), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 195/608 (32%), Positives = 299/608 (49%), Gaps = 88/608 (14%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K+ AEAA+ AKS FLAT+SHEIRTP+NGV+GMLD+L +T+ D  Q  YV  A+ S ++L+
Sbjct: 599  KEMAEAANKAKSSFLATMSHEIRTPLNGVIGMLDLLCETDTDQQQGRYVSIAKNSAESLL 658

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
             LIN++LD +K+E+GKLEL    FNL  +++DV  +F+ ++  KG+EL+ +I   V   +
Sbjct: 659  CLINDILDFSKIEAGKLELSPSEFNLPTLVEDVSDMFAHRAASKGLELSCHILPEVASRV 718

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GD  R RQI+ NL+GN+IKFTE G I + V                            +
Sbjct: 719  LGDSERLRQILINLIGNAIKFTEVGEIRINV-------------------------AATS 753

Query: 430  DRCH-SWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 488
             R H  W  F+                        V+DTG GIP + Q R+F PF Q   
Sbjct: 754  TRDHEQWVRFE------------------------VQDTGVGIPEDIQQRLFQPFEQADA 789

Query: 489  SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 548
            S +R  GGTG+GL+I + L   M G+I   S    G+TF+    F            Q +
Sbjct: 790  STTRKFGGTGLGLAICRELAILMGGKITVDSQLGSGATFSLEIPF-------EVIKRQAL 842

Query: 549  NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGS 605
              Q   +   F+G++ L VD       + +  I   G +V  VS   + LQ L   A   
Sbjct: 843  GRQ---IDERFRGVRILAVDDVETNRVILQTQIATWGAEVVTVSSANEALQELQTAAREE 899

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
            +   + + +  + E D    +  V+N   L     ++  LL +S    R     +G+   
Sbjct: 900  RPFEICITDYNMPEMDGLQLSRSVSNDPDLK---DTRFLLLTSSDGIERRQLEENGIHAC 956

Query: 666  SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL--LGR---KILIVDDNNV 720
            S   KP+R S L   L   +   N      +EL + ++   L  +G    +IL+ +DN +
Sbjct: 957  SC--KPIRPSRLFNELLALL--FNNPPEEEFELDAHAVSEELGMVGNDAYRILVTEDNEI 1012

Query: 721  NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
            N  V    ++R G        G++A +LL    +FD   MD QMP  DGF AT  IR+++
Sbjct: 1013 NQIVTQEIIERAGFQCRLANNGQEAIDLL-KKRKFDLVLMDCQMPVKDGFTATAEIRQIQ 1071

Query: 781  HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                    +GE++ +  +     H+PI+A+TA+ ++   E CL++GMD YV+KP + + L
Sbjct: 1072 P-------KGELNKDLPQ-----HLPIVALTANAVKGDQERCLKAGMDAYVAKPIDPQLL 1119

Query: 841  YREVSRFF 848
               + +  
Sbjct: 1120 ISTIRKLL 1127


>gi|336246899|ref|YP_004590609.1| hybrid sensory histidine kinase BarA [Enterobacter aerogenes KCTC
           2190]
 gi|444354993|ref|YP_007391137.1| BarA sensory histidine kinase (= VarS = GacS) [Enterobacter
           aerogenes EA1509E]
 gi|334732955|gb|AEG95330.1| hybrid sensory histidine kinase BarA [Enterobacter aerogenes KCTC
           2190]
 gi|443905823|emb|CCG33597.1| BarA sensory histidine kinase (= VarS = GacS) [Enterobacter
           aerogenes EA1509E]
          Length = 916

 Score =  262 bits (670), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 196/608 (32%), Positives = 293/608 (48%), Gaps = 113/608 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRNTLDEVVTLLAHSAHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I V   LVE+                        
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTEHGNIDV---LVEQ------------------------ 435

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                ++ S   + + V + DTG GIP   QSR+F  F Q   S
Sbjct: 436 ---------------------RAMSNSRVQIEVQIHDTGIGIPERDQSRLFQAFRQADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN+++  F      G K   ++     A+ +   +    ++V V S  L  L      
Sbjct: 522 --PNAITDGFDTHCLAGKKLAYIEANTTAAQSTMELLATTPLEV-VYSPTLSALPDAH-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKL--GCGFQSKLFL-LANSISSSRANTSTDG 661
               +++L    V  +D S      N   KL   C     L L L      S      +G
Sbjct: 577 ---YDILLAGIPVSMRDLS------NQREKLVRACSLSDTLVLGLPCHAQVSAEELKRNG 627

Query: 662 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 721
           V+  + ++KPL S+ L   L  +             +P   +    L   ++ VDDN  N
Sbjct: 628 VT--ACLLKPLTSTRLFPVLMASCRA-------QPPVPQPYIDSDKLAMTVMAVDDNPAN 678

Query: 722 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
           LK+  A L      V+  + G+ A E      Q D   MDIQMP+MDG  A ++IR + H
Sbjct: 679 LKLIGALLDDLVQHVILCDSGQDAVE-QAKQSQLDLILMDIQMPDMDGIRACELIRHLPH 737

Query: 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
                                   P++A+TA  ++   E+ L +GM+ Y++KP E ++L 
Sbjct: 738 --------------------QQQTPVIAVTAHALEGQREKLLAAGMNDYLAKPIEEDKLS 777

Query: 842 REVSRFFP 849
             + R+ P
Sbjct: 778 TLLLRYQP 785


>gi|451820687|ref|YP_007456888.1| putative sensor histidine kinase/response regulator hybrid
           [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
 gi|451786666|gb|AGF57634.1| putative sensor histidine kinase/response regulator hybrid
           [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
          Length = 949

 Score =  262 bits (670), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 195/622 (31%), Positives = 302/622 (48%), Gaps = 96/622 (15%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           +++ K++AEAA+VAKSQFLA +SHEIRTPMNG+ G L++L  TEL + Q++++R A+++ 
Sbjct: 313 LLKAKEQAEAANVAKSQFLANMSHEIRTPMNGIFGFLELLQTTELSLEQEEFIREAKSAS 372

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
           + L+ +IN++LD +K+E+ KL +E++ FNLR  ++D +SL S K+ +KG+E+ V I D V
Sbjct: 373 EILLYIINDILDFSKIEAKKLVMESIKFNLRTTIEDAVSLLSHKAVEKGLEIYVMIKDGV 432

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
           PE +IGDP R RQI+ NL+ N++KFTE G I V+V   E+  D   +  E+   K+T  G
Sbjct: 433 PEEVIGDPSRIRQILNNLISNAVKFTESGDISVSVDYEEKENDMANLYFEV---KDTGIG 489

Query: 426 YPVADRCHSWKGFKTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
               D  H  K F++FNQ D ST                                     
Sbjct: 490 IRKED-IH--KLFQSFNQADAST------------------------------------- 509

Query: 485 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
                 +R +GGTG+GL+IS  LV  M GE+   S    GSTF F         +S    
Sbjct: 510 ------TRKYGGTGLGLAISSELVKMMDGEMNVESEFGKGSTFKFNVNLKIAKRSS---- 559

Query: 545 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
                 +P     + +G+  LVVD      +  + +     I +    D    ++ +   
Sbjct: 560 ------EPKFDLEKLKGVNILVVDGNDNNRESIKSYFHGADINLFEAKDAGDAITTVIKN 613

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS--ISSSRANTSTDGV 662
           S   N I V    +      +      L+ +      KL LL +S  I  S+A       
Sbjct: 614 SNSKNKIDVAIVDYRMSDMTAYELATTLKSIPIAKDIKLILLTSSAKIVDSKA---AKEY 670

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL--LGRKILIVDDNNV 720
              S + KP+R   L + +   +G+          +   +++ +   L  KIL+V+DN +
Sbjct: 671 GFSSYLSKPIRKDDLISCIAILLGLEEDHEEEQEVVIKHTVKEIKHSLKPKILLVEDNEI 730

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           N K+    LK           G +A + ++    +D  FMD QMP MDG+E+T  IRE+E
Sbjct: 731 NRKIVIGILKSREMTCDIAVNGSEAVKAVL-ERDYDVVFMDCQMPVMDGYESTARIRELE 789

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                    GE            H  I+AMTA+ ++   E+C+++GMD Y+SKP   E +
Sbjct: 790 ---------GEKK----------HTTIIAMTANAMEGDSEKCIQAGMDYYISKPINFELM 830

Query: 841 Y---------REVSRFFPPIPD 853
           +         RE++  F  I D
Sbjct: 831 FSMIESNTKTREITINFNSIID 852


>gi|296120946|ref|YP_003628724.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
 gi|296013286|gb|ADG66525.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
          Length = 1322

 Score =  262 bits (670), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 187/601 (31%), Positives = 287/601 (47%), Gaps = 89/601 (14%)

Query: 261  SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 320
            SQFLA +SHEIRTP+NGV+GMLD+L  T LD  Q+ YV   ++S   L+ LIN++LD +K
Sbjct: 611  SQFLAKMSHEIRTPLNGVIGMLDLLKATSLDDRQKRYVTICRSSADTLLGLINDILDLSK 670

Query: 321  VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 380
            +E+G++EL  V F+L  +++D+  +F  +++ KGVELA +I+  VP+ + GDP R RQI+
Sbjct: 671  IEAGRMELALVDFDLHQLVEDISEMFVHRAEGKGVELACHIAPDVPQRIEGDPERLRQIL 730

Query: 381  TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 440
             NL+GN++KFT  G++ + V + +                      P  +          
Sbjct: 731  VNLVGNALKFTSVGYVLIKVSMAQS---------------------PTGEH--------- 760

Query: 441  FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 500
                               L + V+DTG GI    Q ++F PF Q   + SR  GGTG+G
Sbjct: 761  ------------------RLQIHVKDTGIGISPAQQQKLFQPFTQADVTTSRRFGGTGLG 802

Query: 501  LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 560
            LSI + L   M+G I   S   +G+TFT          TS E +     ++P        
Sbjct: 803  LSICRQLADLMQGSIQIESAVGVGTTFTVDLPL-----TSAEVSKVAPEHEP------LA 851

Query: 561  GMKALVVDPRPIRAKVSRYHIQRLGIQVE---VVSDQLQCLSQIASGSKIINMILVEQEV 617
            G++ L+VD   I  ++   H+   G +V         L  LS+ A+     ++ ++++++
Sbjct: 852  GLRVLLVDDNEINLEILSEHLVAWGCRVSKCLSAETALSLLSKPATTGPAFSIAIIDKQM 911

Query: 618  WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV-SIPSVIMKPLRSSM 676
               D     +   ++RK      S   L+  S+  S A  + DG+    + I KP+R+  
Sbjct: 912  PGFD---GEMLAGSIRKYA-HLDSLRILMLTSVDFSDA--AVDGIPPWDAWINKPVRAGR 965

Query: 677  LAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAV 736
            L   LQ+        N R                +ILI DDN VNL V    ++  G   
Sbjct: 966  LLEMLQKLRDYVPLENARELSAQQPLSETKTPSARILIADDNEVNLIVTTELVRSLGFDT 1025

Query: 737  VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEA 796
                 G    E L     +D   MD QMP +DGFE T+ IRE+E    N    GE     
Sbjct: 1026 ETAADGSIVLEKL-KSQTYDLILMDCQMPTLDGFETTRKIREIEKQAQN----GE----- 1075

Query: 797  YENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP---PIPD 853
                   H+PI+A+TA+ IQ   + C ++GMDGY++KP +  QL   + +      P+P 
Sbjct: 1076 -------HIPIVALTANAIQGDNDRCRQAGMDGYLTKPIDHAQLSNTLLQILTTHQPVPQ 1128

Query: 854  R 854
            +
Sbjct: 1129 Q 1129


>gi|431929976|ref|YP_007243022.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
 gi|431828279|gb|AGA89392.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
          Length = 750

 Score =  262 bits (670), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 190/617 (30%), Positives = 294/617 (47%), Gaps = 99/617 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K++AEAA  AKS+F+A +SHEIRTPMNG+LGML+ML  T L+  Q   ++  + S + L+
Sbjct: 218 KEQAEAASQAKSRFVANMSHEIRTPMNGMLGMLEMLSQTRLNREQTAALQVVRRSAEGLL 277

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++I+++LD +K+ESGKLELE + F++R + ++V +LFS  ++ KG+ELA + +   P  +
Sbjct: 278 TVIDDILDVSKIESGKLELEEIPFDVRGLTEEVATLFSASARSKGLELACFFAPSAPAHV 337

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R RQI+ NL+GN+IKFT +G + + V            E E SS +         
Sbjct: 338 CGDPTRLRQILNNLLGNAIKFTHEGEVALRVE-----------EAEASSPE--------- 377

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                    A+ + L   V DTG G+  E  + +FTPF Q   S
Sbjct: 378 -------------------------ANTVRLRFEVIDTGIGMSAEHMAHLFTPFHQADAS 412

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R  GGTG+GL+ISK L   M G+I   S    GS F     F            Q   
Sbjct: 413 TTRRFGGTGLGLAISKNLARLMGGDIEVASGLGRGSRFALVVPF----------TRQGEV 462

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG----- 604
             P  V ++  G +ALVVD      +V  Y+++  G+  +  +   + L Q+ +      
Sbjct: 463 EHPVRV-ADLTGRRALVVDDNETNRRVVGYYLRNWGVVTQCAATAAEGLRQLRAAVDEGQ 521

Query: 605 ---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
                I+++ + + E ++         V  +R       +++ LL    +S       D 
Sbjct: 522 PFDVAILDLEMPDAEGFD--------LVRRIRTDSALAATRIMLL----NSGGKTGLQDD 569

Query: 662 VSIPSVIMKPLRSSMLAASLQRAM-----GVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
           +    V+ KP+R  +L  +L +A+     G       +    PS      LL  ++L+V+
Sbjct: 570 LGGALVLAKPIRQQLLRDALLQALSGVAHGSSTGAPAQRPGAPSAGHGAPLLRGRVLLVE 629

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
           DN +N +VA   L+R G      E G +          +DA  MDIQMP+MDG+E T+ I
Sbjct: 630 DNPINQQVALGLLRRLGLTPDVAETGAQGIAQATSA-DYDAILMDIQMPDMDGYETTRAI 688

Query: 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
           R  E   + R                  VPI+AMTA+ ++   E CL +GMD Y++KP  
Sbjct: 689 RAWEAVHHRR-----------------SVPIIAMTANTLEGDRERCLEAGMDDYLAKPVR 731

Query: 837 AEQLYREVSRFFPPIPD 853
                  +  +  P  D
Sbjct: 732 LAGFAEVLGHWLEPAGD 748


>gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.]
          Length = 1266

 Score =  262 bits (670), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 186/626 (29%), Positives = 304/626 (48%), Gaps = 102/626 (16%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            +++ K+KAE A  AK +FLA +SHEIRTPMNG++   ++L + ++    + Y+R    S 
Sbjct: 506  LIKAKEKAEVATGAKDEFLANMSHEIRTPMNGIIAASELLSNEDISDKAKHYLRIITTSA 565

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
             +L+ +IN++LD +K+E+GKL+LE   F +  ++D ++++F  ++  K +EL V I   +
Sbjct: 566  YSLLEIINDILDVSKIEAGKLDLEIRDFKIEDVIDKLVNMFFHRTSKKFIELLVDIDPEI 625

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  L GD  R  QI+ NL+ N++KFT+KG I +                           
Sbjct: 626  PRALRGDELRLYQILVNLVSNAVKFTKKGGIIIV-------------------------- 659

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                       G K           +S+ +  + L   ++DTG GI  E   +IF PF Q
Sbjct: 660  -----------GVKELEN-------RSAESGEVKLRFFIKDTGIGIAHENIEKIFEPFSQ 701

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               S +R +GGTG+GL I K LV  M GEI   S P  GSTF+FTA+F            
Sbjct: 702  ADASTTRNYGGTGLGLCICKQLVEMMGGEIRVESEPEKGSTFSFTAIF------------ 749

Query: 546  QQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQ 596
               + QP     EF      QG+  LVVD       +    ++  G +VE +S     LQ
Sbjct: 750  ---HRQPKKTEREFIPPHGLQGLNVLVVDDCKDSQNIMEKMLESFGFKVESISSAQASLQ 806

Query: 597  CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
             L +  +    I++++++  +   D   ++  + +  KL         ++  +  +    
Sbjct: 807  RLREDETRENPIDLVMMDWLMPGLDGIEASSIIRDDLKLNVP-----IIMMTAFGNETQM 861

Query: 657  TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL---RHLLLGRKIL 713
               + V +   + KP+  S L  ++  A G     +++  +  +  +   +  L G ++L
Sbjct: 862  LYAEKVGVNGFLTKPICQSTLFDAIMDAFGKKRAKSLKEKKHITTRVSIHKKRLKGFRVL 921

Query: 714  IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
            + +DN  N ++A A L+  G  V  V  GK+A + +    QFDA  MDIQMP MDG+EAT
Sbjct: 922  VAEDNITNQEIALAILEEAGLVVKIVNNGKEAVDAVRES-QFDALLMDIQMPVMDGYEAT 980

Query: 774  KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
            + IR+ +  F +                   +PI+AMTA  ++   EECL++GM+GY+ K
Sbjct: 981  RQIRK-DAEFKD-------------------LPIIAMTAHAMKGDEEECLKAGMNGYIPK 1020

Query: 834  PFEAEQLY----REV-SRFFPPIPDR 854
            P   + L+    RE+ +R  P I D+
Sbjct: 1021 PVSQDMLFNVLWRELKNREKPDIADK 1046


>gi|372487459|ref|YP_005027024.1| PAS domain S-box [Dechlorosoma suillum PS]
 gi|359354012|gb|AEV25183.1| PAS domain S-box [Dechlorosoma suillum PS]
          Length = 1306

 Score =  262 bits (670), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 184/611 (30%), Positives = 298/611 (48%), Gaps = 89/611 (14%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            +  AE A  AKS FLA +SHEIRTPMN ++GM  + M TEL   Q+DYV     +  +L+
Sbjct: 569  RATAEEATEAKSLFLANMSHEIRTPMNAIIGMAHLAMKTELTPKQRDYVGKIHNAAISLL 628

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
             +IN++LD +K+E+GKL LE V F+L  +LD+V  L   K+ +KG+EL   ++   P  L
Sbjct: 629  GIINDILDFSKIEAGKLSLEYVPFSLEDVLDNVSGLLGLKANEKGLELLFNVNAGTPAGL 688

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GDP R  QI+TNL+ N+IKFTE+G I +T   V++  D ++++                
Sbjct: 689  VGDPLRLNQILTNLVSNAIKFTERGQITLTTRPVDQAGDRVKLQF--------------- 733

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                 W                            +ED G G+  E    +F  F Q   S
Sbjct: 734  -----W----------------------------IEDMGIGMSREQLLHLFQAFTQADGS 760

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GLSIS+ LV  M G I   S    GSTF FTA FG     +         
Sbjct: 761  TTRKYGGTGLGLSISRRLVEMMGGTIWADSTLGEGSTFCFTAWFGRAEELA--------- 811

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA---SGSK 606
             +P ++ +   G++ LV D      ++    ++ L ++ ++V+   + L+Q+     G+ 
Sbjct: 812  -RPRTLPASLAGLRVLVADDNGAAREILGEALRHLDLRPDLVASGAEALAQLTEMQGGAD 870

Query: 607  IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
               ++ ++ ++ + D  VSTL  + L++     Q    ++  +         T+ + I  
Sbjct: 871  PYRVLFLDWQMPDLD-GVSTL--HKLQQALPQAQWPRVVMVTAYDQEELRRQTENLGICG 927

Query: 667  VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
            +++KP+ +S L   L   + + +  N     L   + +  + G +IL+ +DN +N ++A 
Sbjct: 928  ILVKPVSASTLFDVL---VSLVDADNAPATPLHIAAPQTRIDGMRILLAEDNEINQQIAV 984

Query: 727  AGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
              L+  GA V     G +A ELL   P   FD   MD+QMP +DG++AT+ +R  +  F 
Sbjct: 985  ELLQSMGAQVTVAGDGLQAVELLERSPDDSFDLVLMDLQMPHLDGYDATERLR-CQQRFA 1043

Query: 785  NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                               H+PILAMTA  +    E CL  GM+ +++KP +   L   +
Sbjct: 1044 -------------------HLPILAMTAHAMPEERERCLAIGMNDHLAKPIDPTALAATL 1084

Query: 845  SRFFPPIPDRS 855
            +R++   P  S
Sbjct: 1085 ARWYEERPGAS 1095


>gi|395225868|ref|ZP_10404378.1| signal transduction histidine kinase [Thiovulum sp. ES]
 gi|394445947|gb|EJF06805.1| signal transduction histidine kinase [Thiovulum sp. ES]
          Length = 906

 Score =  262 bits (670), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 179/631 (28%), Positives = 310/631 (49%), Gaps = 119/631 (18%)

Query: 239 VEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 298
           V+++ + + E+ K  ++A+ AKS F+AT+SHEIRTPMN +LG+ ++L +T+LD  Q ++ 
Sbjct: 233 VQKEKNTLEEIAKVEKSANEAKSIFIATMSHEIRTPMNAILGLTEILQNTDLDQEQYEFT 292

Query: 299 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 358
            T   SG +L+ +IN++LD +KVE+G+LELE ++ +L  +++DV+ L    + +KGV L 
Sbjct: 293 ETIYNSGNSLLDIINDILDYSKVEAGRLELEELNTDLENLVNDVVFLLEHNANEKGVRLI 352

Query: 359 VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 418
           V      P+ +  DP R +Q++ NL+GN+IKFT+ GH+ + V   EE             
Sbjct: 353 VDYCSTCPQFIKCDPSRLKQVLINLVGNAIKFTKSGHVLLRVGKKEE------------- 399

Query: 419 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 478
                                                   NL+  +EDTG GIP +    
Sbjct: 400 ----------------------------------------NLLFEIEDTGIGIPEKKLKN 419

Query: 479 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS 538
           +FT F QV  S +R +GG+G+GL+ISK ++  M G+IG  S+ +IGS F F         
Sbjct: 420 LFTIFTQVDSSTTREYGGSGLGLAISKKMIELMGGKIGVQSVLHIGSKFYFEIPL----- 474

Query: 539 TSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 598
               + S+++ +     S   +G+KAL+VD       V    ++  G+++  +++  + +
Sbjct: 475 ----YESEEIKDLSEKKS--LKGVKALIVDDYETNRIVFEGQLEEFGMEIVSIAESREAI 528

Query: 599 SQIASGSKI---INMILVEQEVWEKDTSVSTLFVNNL---RKLGCGFQSKLFLLANSISS 652
           S +   +K     +++L +Q +          F++ L   +K+         ++  + S 
Sbjct: 529 SILEEANKKGEPFDIVLTDQNMP---------FLDGLSLSKKIKDNKNISSSIVVVTSSG 579

Query: 653 SRANTST-DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR- 710
            R +    +       ++KP+    +   L   +G       R+++ P    R++L  + 
Sbjct: 580 HRGSFDEFEKAGASGYLVKPIDRKTMNKFLATVLGT------RDFKNPPFITRYMLNQKM 633

Query: 711 -------------KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 757
                        K+L+ +D   N+ V    LK +   V     G++A   L     F+ 
Sbjct: 634 KQSKDTEAKKFIGKVLVAEDTKANVIVIKTLLKSFNLEVSIANDGQEALN-LYKSENFNL 692

Query: 758 CFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQA 817
            FMD++MP MDG EATK+IR+                  YE +S+   PI+A+TADVIQ 
Sbjct: 693 VFMDLRMPNMDGLEATKLIRK------------------YEEISHKFTPIIALTADVIQQ 734

Query: 818 TYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           T E+  ++GM+GY++KPF+  ++   +S F 
Sbjct: 735 TKEDTEQAGMNGYIAKPFKIAEITAVLSNFL 765


>gi|365538843|ref|ZP_09364018.1| GacS/BarA family sensor protein [Vibrio ordalii ATCC 33509]
          Length = 1320

 Score =  262 bits (669), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 190/615 (30%), Positives = 301/615 (48%), Gaps = 97/615 (15%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + E K+ A+A   AK  FLA +SHEIRTPMN +LGM  + ++TEL+ TQQ Y+     S 
Sbjct: 593  LREAKETADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTELNPTQQKYISRINESA 652

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            K L+ +IN++LD +K+E+GKL +E + F+L  +LD++ +L S K+Q+K +E  + I   +
Sbjct: 653  KNLLGIINDILDFSKIEAGKLNVEHIDFSLDEVLDNLTTLISLKAQEKNIEFLLDIDPHI 712

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  L+GDP R  Q++ NL GN++KFTE+G I V+V +V                      
Sbjct: 713  PVGLVGDPLRLGQVLVNLCGNAVKFTEQGEIIVSVRVV---------------------- 750

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                             Q+ +           + L  +V DTG GI       +F+ F Q
Sbjct: 751  ----------------GQNDAN----------VTLKFTVYDTGIGIAESNIGTLFSAFSQ 784

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               SI+R +GGTG+GLSISK LVG M G+I   S    GSTF FT   G   +       
Sbjct: 785  ADNSITRQYGGTGLGLSISKQLVGLMGGDIQVRSEEGSGSTFEFTIECGLQEA------- 837

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
             +M +    + +   G +ALVVD       +    +  +  + + VS+  + L +I +  
Sbjct: 838  -KMRDIAKPLIA-LAGKRALVVDDNDSARNILMTLLNAMHFEAKSVSNGFEALDEIRNTH 895

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTSTDGV 662
               +M+ ++   W          +  ++ LG    +K FL+      IS    N+     
Sbjct: 896  --FDMMFID---WNMPGMNGIELLQRMKSLGDFDNTKRFLVTAYGREISLVGENSKL--- 947

Query: 663  SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
             + ++I+KP+  S L  ++  + G+     I   E     +R   +G+K+L+V+DN VN 
Sbjct: 948  -VDALIVKPVNPSNLLDAIMDSYGIEQLRKIH--EHLDYDIRPSFMGQKVLLVEDNVVNQ 1004

Query: 723  KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
            +VA   L+    ++V    G++A   L     FD   MD+QMP MDG  ATK IR+    
Sbjct: 1005 EVALGLLESTQLSIVVANNGQEALTKLQ-QEAFDLVLMDMQMPIMDGISATKEIRQ---- 1059

Query: 783  FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                          YE      +PI+AMTA+ + +  E CL +GM+ +V+KP + ++LY 
Sbjct: 1060 --------------YEKWK--ALPIVAMTANAMSSDVEHCLNAGMNDHVAKPIDVQRLYH 1103

Query: 843  EVSRFFP-----PIP 852
             + ++       P+P
Sbjct: 1104 VLRKYLKADETTPVP 1118


>gi|427738829|ref|YP_007058373.1| signal transduction histidine kinase [Rivularia sp. PCC 7116]
 gi|427373870|gb|AFY57826.1| signal transduction histidine kinase [Rivularia sp. PCC 7116]
          Length = 1288

 Score =  262 bits (669), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 193/613 (31%), Positives = 303/613 (49%), Gaps = 85/613 (13%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K+ AE A+ AKS+FLA +SHEIRTPMN V+GM  +L+D +L   Q D+V T ++SG AL+
Sbjct: 622  KQGAETANRAKSEFLAMMSHEIRTPMNAVIGMSGLLLDMDLTPRQLDFVETIRSSGDALL 681

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            ++IN++LD +K+ESG+L+LE + FNLR  +++ L L + ++ DK + LA  I  + P  +
Sbjct: 682  TIINDILDFSKIESGRLDLEKLPFNLRNCIEESLDLLTSQAADKNLNLAYMIDSQTPTLI 741

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            IGD  R RQII NL+ N++KFT+ G + V+V                       SG    
Sbjct: 742  IGDVTRVRQIIVNLLSNAVKFTQAGEVCVSV-----------------------SG---- 774

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                     +  + + ST+ ++        +  SV DTG GIP E   R+F PF QV  S
Sbjct: 775  ---------RQLSSELSTNDYQ--------IKFSVSDTGIGIPQEKIQRLFKPFSQVDAS 817

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            ++R +GGTG+GL+ISK L   M G +   S   +GSTF FT       S ++   S   N
Sbjct: 818  MTRQYGGTGLGLAISKRLSEIMDGTMWVESTVGVGSTFHFTIA---AQSVASAGISNLDN 874

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             QP+       G + LVVD       +    +++ GI V   S   + L ++ +  K  +
Sbjct: 875  IQPH-----LSGKRLLVVDSNATNRNILTLQMEKWGIVVFAASTTSEAL-ELVNSRKDFD 928

Query: 610  MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
            M +++ +  + D       ++ +   GC  +    ++ +S+               +++ 
Sbjct: 929  MAIIDMQTPQVDGLNLAAEIHGVP--GC--EQLPIVMLSSVDRVTQQQLVAKSKFVALLN 984

Query: 670  KPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
            KP++ S L  +  R +      N+ +  ++  M L   L  R IL+V+D  +N KVA   
Sbjct: 985  KPIKQSQLYDTCVRILCGKQISNLSSTSKVDDMQLSEQLPLR-ILLVEDMPLNQKVALHM 1043

Query: 729  LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
            L++ G +      G +A   L    ++D  FMD+QMPEMDG +AT+ I            
Sbjct: 1044 LQKLGYSADVAANGLEALTSLR-RQEYDIVFMDVQMPEMDGLQATRCI------------ 1090

Query: 789  RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL------YR 842
                     E        I+AMTA+ +Q   EECL +GM+ Y+SKP   + L      Y+
Sbjct: 1091 -------CKEWSPPLRPWIIAMTANAMQGDREECLNAGMNDYLSKPVRIDALVQALHNYQ 1143

Query: 843  EVSRFFPPIPDRS 855
             +   F P  D +
Sbjct: 1144 SLRHSFNPDSDST 1156


>gi|428303899|ref|YP_007140724.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
 gi|428245434|gb|AFZ11214.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
          Length = 1112

 Score =  262 bits (669), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 203/631 (32%), Positives = 312/631 (49%), Gaps = 93/631 (14%)

Query: 224  LVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 283
            L+     +T+ R    EE    +   + +A AA  AK++FLAT+SHEIRTPMNGV+GM  
Sbjct: 552  LMAQWVGSTIERKIAAEE----LALTRDQAIAATQAKAEFLATMSHEIRTPMNGVIGMTG 607

Query: 284  MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 343
            +L++T+L   Q+D+V T + SG +L+++IN++LD +K++SGKLELE   F LR  +++ L
Sbjct: 608  LLLETDLTPQQRDFVETIRTSGDSLLTIINDILDFSKIDSGKLELEKHPFELRIGIEEAL 667

Query: 344  SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 403
             L + K+  KG+ELA  I    P+T++GD  R RQI+ NL+ N+IKFTE G + ++V   
Sbjct: 668  DLVAHKAGSKGLELAYLIDSNTPQTILGDITRLRQILVNLLSNAIKFTEVGEVVLSV--- 724

Query: 404  EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 463
                           +   + G  V   C                      +D   +  +
Sbjct: 725  ---------------TAKQIPG-EVQHNC----------------------SDTYEIKFA 746

Query: 464  VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 523
            V+DTG GIP     R+F  F QV  S +R +GGTG+GL IS+ L   M G++   S PN 
Sbjct: 747  VKDTGIGIPANRMDRLFQSFSQVDSSTTRQYGGTGLGLVISQRLSQIMGGKMWVESQPNQ 806

Query: 524  GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 583
            GS F FT V  +   +S       + + P + +    G + L+VD      K+     Q 
Sbjct: 807  GSIFYFTIVAQSIPCSS-------ILDVPTATT--LSGKRLLIVDDNATNRKILTLQAQS 857

Query: 584  LGIQVEVVS---DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640
             G+    V+   + L+CLS+     +  ++ +++ ++ E D          +RKL   FQ
Sbjct: 858  WGMLSNAVTGGNEALECLSR----GEQYDIAVLDMQMPEMD---GLTLAAEIRKLP-QFQ 909

Query: 641  SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG---VGNKGNIRNWE 697
                ++  S+  SR        +  + + KP++   L     +A+    V  K       
Sbjct: 910  HLPLVMLTSLGRSRIVEQGVKHNFAAFLSKPIKQEQLYNVFLQALSDQLVTTKAPPPTSS 969

Query: 698  LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQF 755
              +  L   L  R IL+ +DN VN KVA   LKR G     V  G +A E L  +P   +
Sbjct: 970  AATTKLAESLPLR-ILLAEDNVVNQKVAIQLLKRLGYRADVVGNGCEALEALCHVP---Y 1025

Query: 756  DACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815
            D   MD+QMPEMDG EAT+ I                 I+ +++V      I+A+TA+ +
Sbjct: 1026 DVVLMDMQMPEMDGIEATRRI-----------------IQNWQSVERPR--IIALTANAM 1066

Query: 816  QATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
            Q   E CL++GMD Y+SKP   E L + +S+
Sbjct: 1067 QGDKELCLQAGMDDYLSKPIRLENLVQALSK 1097


>gi|302875422|ref|YP_003844055.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
           743B]
 gi|307689020|ref|ZP_07631466.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
           743B]
 gi|302578279|gb|ADL52291.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
           743B]
          Length = 949

 Score =  262 bits (669), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 177/600 (29%), Positives = 297/600 (49%), Gaps = 83/600 (13%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           + + K++AEAA++AKS+FLA +S EIRTPMNG+ G L++L  T L   Q++++R A+++ 
Sbjct: 313 LYKAKEEAEAANIAKSKFLANMSREIRTPMNGIFGFLELLELTNLSSEQKEFIREAKSAS 372

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
           + L+ +IN++LD +K+E+ KL +E +SFNLR  ++D +SL + K+ +KG+EL V I + V
Sbjct: 373 EVLLHIINDILDLSKIEARKLIMENISFNLRDAIEDTVSLLAPKAAEKGLELYVRIKEDV 432

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
           PE +IGDP R RQI+ NL+ N++KFTEKG++ ++       +D +E + E++        
Sbjct: 433 PEEVIGDPSRLRQILNNLIYNAVKFTEKGYVSIS-------MDYLEKDHEIA-------- 477

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                          L+N    VEDTG GI  E   ++F  F Q
Sbjct: 478 -------------------------------LVNF--EVEDTGIGIATEDIPKVFEAFNQ 504

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
              S +R +GGTG+GL IS  L+  M G+I   S    GSTF F          S +   
Sbjct: 505 ADASTTRKYGGTGLGLPISYELIKMMGGDIRVESKLGEGSTFKFNVNLKIAKRASEQR-- 562

Query: 546 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
                    +  + +G   ++VD       + + + Q  G+ +    +    ++ I S +
Sbjct: 563 --------CLFDKLKGKNIIIVDGNENNINIIKSNFQGTGVNIFEAKNAGNAINIIISNA 614

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
              N I +    ++            ++ +    + KL LL N      +N + +   + 
Sbjct: 615 NTENRIDIAIIDYQMSDMTGYELATTIKTIPFAKEIKLILLINLSQKGESNVAQENGFLS 674

Query: 666 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP---SMSLRHLLLGRKILIVDDNNVNL 722
           S + KP+R   L   + +  G+  K +  N ++    ++S     L  KIL+V+DN +N 
Sbjct: 675 S-LFKPIRRKDLLNCISKIFGL-QKEDEENRKIEIKDAISETKNRLIPKILLVEDNEINR 732

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
           K+  + +K           G +A + +     +D  FMD QMP MDG+E+T  IR++E N
Sbjct: 733 KIFISMIKSRNFTCDVAVDGSEALKAV-EKKDYDIIFMDCQMPTMDGYESTAKIRKLEGN 791

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                                H  I+AMTA+ ++   E+C+ +GMD Y+SKP    ++++
Sbjct: 792 -------------------KKHTRIVAMTANAMEGDSEKCIEAGMDDYISKPINFNKMFK 832


>gi|423109998|ref|ZP_17097693.1| signal transduction histidine-protein kinase BarA [Klebsiella
           oxytoca 10-5243]
 gi|423115959|ref|ZP_17103650.1| signal transduction histidine-protein kinase BarA [Klebsiella
           oxytoca 10-5245]
 gi|376379371|gb|EHS92124.1| signal transduction histidine-protein kinase BarA [Klebsiella
           oxytoca 10-5245]
 gi|376380540|gb|EHS93285.1| signal transduction histidine-protein kinase BarA [Klebsiella
           oxytoca 10-5243]
          Length = 917

 Score =  262 bits (669), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 195/607 (32%), Positives = 297/607 (48%), Gaps = 115/607 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNTTQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRNSLDEVVTLLAHSAHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNLMGN+IKFTE G+I V   LVE+                        
Sbjct: 403 IGDPLRLQQIITNLMGNAIKFTEHGNIDV---LVEQ------------------------ 435

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                ++ S   + + V + DTG GIP   QSR+F  F Q   S
Sbjct: 436 ---------------------RAISNSRVQIEVQIHDTGIGIPERDQSRLFQAFRQADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQ--PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
               P+SV ++   G K   ++     A+ +   +    ++V V S  +  L        
Sbjct: 522 PNAVPDSVPTQCLAGKKLAYIEANAAAAQCTMELLATTPLEV-VYSPTMTALPDAH---- 576

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
             +++L    V  +D +     +   RKL       L  L      S      DG++  +
Sbjct: 577 -YDILLAGIPVSIRDLNQHRDKLARARKLADHL---LLALPCHAQVSAETLKHDGIA--A 630

Query: 667 VIMKPLRSSMLAASL------QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
            ++KPL S+ L  +L      Q  + +   G+ +             L   ++ VDDN  
Sbjct: 631 CLLKPLTSTRLLPALTATCQTQPTLLLPRSGSTK-------------LPMTVMAVDDNPA 677

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           NLK+  A L+     V+  + G+ A E      Q D   MDIQMPEMDG  A ++I ++ 
Sbjct: 678 NLKLIGALLEDLVQHVILCDSGQNAVERAREMQQ-DLILMDIQMPEMDGIRACELIHQLP 736

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
           H                        P++A+TA  ++   E+ L +GM+ Y++KP E ++L
Sbjct: 737 HQQ--------------------QTPVIAVTAHALEGQREKLLSAGMNDYLAKPIEEDKL 776

Query: 841 YREVSRF 847
           Y  + R+
Sbjct: 777 YNLLLRY 783


>gi|392408688|ref|YP_006445295.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
 gi|390621824|gb|AFM23031.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
          Length = 1109

 Score =  262 bits (669), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 188/603 (31%), Positives = 288/603 (47%), Gaps = 83/603 (13%)

Query: 242 DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
           D   + E K++AE AD++KS+FLA +SHEIRTPMN ++GM ++  +TEL   Q++Y++T 
Sbjct: 447 DVTELAEAKRQAEQADLSKSRFLANMSHEIRTPMNAIIGMAELAQNTELTPVQREYIQTI 506

Query: 302 QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
           + SG +L+++IN++LD +K+E+GKL++  V  +L   +   +   + ++  KG+EL   I
Sbjct: 507 ETSGHSLLAIINDILDFSKIEAGKLQISFVGLSLTDCVCGSVHSLASQAHAKGLELVCRI 566

Query: 362 SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
           +  +P+ LIGDP R RQII NL+GN+IKFT KG + V V                 S+  
Sbjct: 567 APGIPDHLIGDPERIRQIIINLVGNAIKFTHKGEVLVEVEEESR------------SAHQ 614

Query: 422 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 481
            L  + V+D                                    TG GIP + Q  +F 
Sbjct: 615 VLLHFKVSD------------------------------------TGIGIPRQKQKTVFC 638

Query: 482 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 541
            F Q   S SRT+GGTG+GL+IS  LV  M G I   S P  GS F F       S+   
Sbjct: 639 AFEQADSSTSRTYGGTGLGLAISSQLVELMGGNIWVESSPGKGSVFNFRIPMEIHSAPPE 698

Query: 542 EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
              SQ +           +G + L+VD      ++    + + G+    V +    L  +
Sbjct: 699 IPVSQDLRT--------LKGTRVLIVDDNATNRRILVELLIQWGMIPSAVDNGRTALKTL 750

Query: 602 ASGSKI---INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 658
               K+     M+LV+  + E D    +  +  + +L     + + +L +++    A   
Sbjct: 751 RERYKMGTPFAMVLVDCMMPEMDGFQVSEAIKAIPELA---STHIIMLTSALPDYSAEKC 807

Query: 659 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                I + ++KP+  S L +++   +  G K +    E     +R      +IL+ +DN
Sbjct: 808 R-AAGIETCLLKPIHKSNLYSAIHELLS-GAKSDSSLEETARRKVRKTERPLRILLAEDN 865

Query: 719 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             N KVA+  L   G ++  V  G +A E       FD   MD+QMP MDGFEAT  IR 
Sbjct: 866 AFNQKVASGMLSGMGHSISVVPNGAEAVEAYT-RGGFDVILMDVQMPLMDGFEATAAIRA 924

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
            E N   RI                  PI+AMTA  +    E CL +GMDGYV+KP  +E
Sbjct: 925 FEKNGAPRI------------------PIVAMTAHAMAGDRERCLNAGMDGYVAKPISSE 966

Query: 839 QLY 841
           +L+
Sbjct: 967 ELF 969



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 37/172 (21%)

Query: 689 NKGNIRNWELP------------SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAV 736
            KG++ N+ +P            S  LR  L G ++LIVDDN  N ++    L ++G   
Sbjct: 679 GKGSVFNFRIPMEIHSAPPEIPVSQDLR-TLKGTRVLIVDDNATNRRILVELLIQWGMIP 737

Query: 737 VCVERGKKATELLMPPHQ----FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 792
             V+ G+ A + L   ++    F    +D  MPEMDGF+ ++                  
Sbjct: 738 SAVDNGRTALKTLRERYKMGTPFAMVLVDCMMPEMDGFQVSE------------------ 779

Query: 793 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
           +I+A   +++ H  I+ +T+ +   + E+C  +G++  + KP     LY  +
Sbjct: 780 AIKAIPELASTH--IIMLTSALPDYSAEKCRAAGIETCLLKPIHKSNLYSAI 829


>gi|186682678|ref|YP_001865874.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465130|gb|ACC80931.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1403

 Score =  261 bits (668), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 204/661 (30%), Positives = 336/661 (50%), Gaps = 47/661 (7%)

Query: 201  FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAK 260
            F+Q  P  +  +      L IA     + +   +R  ++      + + K++AEAA+ AK
Sbjct: 618  FRQWTPDEIELLEAVAAQLGIALAQAQLLEQETHRREELTLKNFALEQAKRQAEAANRAK 677

Query: 261  SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 320
            S+FLA +SHEIRTPMN V+GM D+L+DT+L   QQD+V T ++SG AL+++IN++LD +K
Sbjct: 678  SEFLAMMSHEIRTPMNAVIGMTDLLLDTDLTPQQQDFVETVRSSGDALLTIINDILDFSK 737

Query: 321  VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 380
            +ESGKLELE   F+LRA ++  +SL + K+  K +EL   I  +VP  ++GD  R RQ++
Sbjct: 738  IESGKLELEEQPFDLRACVEQAISLLAPKAAQKNIELVYLIQPQVPTQIVGDMTRLRQVL 797

Query: 381  TNLMGNSIKFTEKGHIFVTVYL-VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
             NL+ N+IKFTE+G + ++V L   + V   E  + L  S   L   P           +
Sbjct: 798  MNLLNNAIKFTERGEVVLSVELGAGDSVKQGENSSPLHPSLVRLR--PSLREAAPTTTLR 855

Query: 440  TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
            T ++    S   +SS   I +  +++DTG GI  E   R+F PF Q   S++R +GGTG+
Sbjct: 856  TSSRQARPS---ASSESPIQIQFAIKDTGIGITPEKIERLFHPFTQADVSMTRRYGGTGL 912

Query: 500  GLSISKYLVGRM--------KGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 551
            GL ISK L   M        +G +G    P   S  + ++ + +  ST     + Q+   
Sbjct: 913  GLVISKRLSKMMGGTLWVESQGIVGGNPSPRWKSRKSLSSPYSSQGSTFYFTITAQVPAV 972

Query: 552  PNSVSS----EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 607
            P +  S    + QG + L+VD      ++     +   ++        + L+Q+A G + 
Sbjct: 973  PEAEFSNSPMQLQGKRLLIVDDNLTNCQIISLQAESWEMETYAAKSAKEALAQLAQGIQ- 1031

Query: 608  INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
             ++ +++ E+   D    TL     R+ GC  Q+   ++  S+      +    V   + 
Sbjct: 1032 FDIAILDMEMPAMDG--ITLARQIRRQSGC--QNLPLVILTSLGREETFSDFGDVEFAAS 1087

Query: 668  IMKPLRSSMLAASLQRAMG-VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
            + KP++ S L   + R +G   ++ +I ++ L    L H L  R IL+ +D  VN KVA 
Sbjct: 1088 LSKPIKQSQLYDVITRVLGNQPSEASITDFPLVDRHLTHPLPLR-ILLAEDTIVNQKVAL 1146

Query: 727  AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE-ATKIIREMEHNFNN 785
              L++ G +   V  G +  + L     +D   MD+ MPEMDG E A +I +E +  F  
Sbjct: 1147 LMLQKIGYSADVVTNGVEVLKALQ-KQPYDLVLMDVHMPEMDGLETARRICQEWKVGFRP 1205

Query: 786  RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 845
                                 I+A+TA+ ++   E CL +GMD Y+SKP + ++L + +S
Sbjct: 1206 H--------------------IIAITANAMRGDREVCLAAGMDDYISKPIQLQKLAQALS 1245

Query: 846  R 846
            +
Sbjct: 1246 K 1246


>gi|223939259|ref|ZP_03631140.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223892091|gb|EEF58571.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 844

 Score =  261 bits (668), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 191/620 (30%), Positives = 306/620 (49%), Gaps = 69/620 (11%)

Query: 229 FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT 288
           +QA      ++ E    ++ L +K E A +AKS+FLA +SHE+RTPMNGV+GM  +L+DT
Sbjct: 156 YQALRESQKQLVEKNASLVALNQKLEEATLAKSEFLANMSHEVRTPMNGVIGMTALLLDT 215

Query: 289 ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 348
           EL   Q++YV   ++S  A++++IN++LD +K+ESGKL+LE+  F L   +++ L L + 
Sbjct: 216 ELTDEQREYVEATRSSADAMLTIINDILDFSKIESGKLDLESHPFELHTCIEEALDLLAP 275

Query: 349 KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 408
           K+ +K ++LA  + D +P+ L+GD  R RQI+ NL+GN++KFT +G +F+ V        
Sbjct: 276 KAAEKDLDLAYSVDDAIPKILVGDVTRLRQILVNLIGNAVKFTNEGEVFIQV-------- 327

Query: 409 SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 468
                             P           K FN D   S    +  D+  L  SV DTG
Sbjct: 328 -----------------KPAP---------KHFN-DRDRSASSITGPDMWMLQFSVRDTG 360

Query: 469 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 528
            GIP++ Q R+F  F QV  S +R +GGTG+GL+I K L   M G+I   S    GSTF 
Sbjct: 361 VGIPIDKQHRLFKSFQQVDASTTRHYGGTGLGLAICKKLSELMGGDIQVESDAGKGSTFH 420

Query: 529 FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 588
           FT +    +++      QQ+  QP     +  G + L+V+      ++  +  ++ G+  
Sbjct: 421 FT-IQARATASVIPPAWQQI--QP-----QLAGKRVLIVEDNATNRQILSHRCRQWGMLP 472

Query: 589 EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 648
           +  ++  + L  +A+  K  +  +++ ++   D          +R+   G  S   LL +
Sbjct: 473 DEAANAEKALEMVAN-QKYYDAAILDVQLPGFD---GIKLAQAIRQRLNG-NSISLLLLS 527

Query: 649 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL-L 707
           S+     +T    + I   + KP+R S L  +L R + +  +   +   LP M       
Sbjct: 528 SVRLRSDDTRAAELGITIFVHKPIRPSQLLQALYRGLSLQIQREKKAPALPCMDSSFANR 587

Query: 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
              +IL+ DDN +N KV    L+R G        G +    L     +D   +D+QMPE+
Sbjct: 588 FPLRILLADDNPINQKVGLNVLRRLGYRADVANNGLEVLRAL-DRQPYDIILLDVQMPEL 646

Query: 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
           DGFE T  IRE       R R                  ++AMT + +    E+CL +GM
Sbjct: 647 DGFETTSSIRE-RWPLGKRPR------------------VVAMTGNALLGDREKCLDAGM 687

Query: 828 DGYVSKPFEAEQLYREVSRF 847
           D Y+SKP    +L   + R+
Sbjct: 688 DDYISKPIRIGELQSALERW 707


>gi|83313245|ref|YP_423509.1| Signal transduction histidine kinase [Magnetospirillum magneticum
            AMB-1]
 gi|82948086|dbj|BAE52950.1| Signal transduction histidine kinase [Magnetospirillum magneticum
            AMB-1]
          Length = 1258

 Score =  261 bits (668), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 179/597 (29%), Positives = 293/597 (49%), Gaps = 94/597 (15%)

Query: 252  KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
            +AEAA  AK+ FLA +SHEIRTPMN ++GM  + + TEL+  Q+DYVR  Q SG+ L+ +
Sbjct: 605  RAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKTELNPRQRDYVRKIQQSGQHLLGI 664

Query: 312  INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
            IN++LD +K+E+GKL +E  + +L  +LD+V +L S K+  KG+EL   ++  VP  ++G
Sbjct: 665  INDILDFSKIEAGKLSVEKTAVHLDTVLDNVANLISEKTIAKGLELIFDVASDVPNDMVG 724

Query: 372  DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
            DP R  QI+ N   N++KFTE G I V V L E++ +++ +  E+  +   LS       
Sbjct: 725  DPLRLGQILINYANNAVKFTETGEIVVAVRLAEDLGEAVRLRFEVRDTGIGLSA------ 778

Query: 432  CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
                                                      E   R+F  F Q   S +
Sbjct: 779  ------------------------------------------EQMGRLFQSFQQADTSTT 796

Query: 492  RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 551
            R +GGTG+GL+IS+ L   M GE+G  S P  GSTF FTA  G G         + +  +
Sbjct: 797  RKYGGTGLGLAISRKLAELMDGEVGVESQPGRGSTFWFTACLGKG------RPRRALVPK 850

Query: 552  PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--ASGSKIIN 609
            P+      +G   LVVD       V    +  +  +VE V      ++++   +G+K   
Sbjct: 851  PD-----LRGRHMLVVDDNENARAVLVDMLTSMSFRVEAVESGAAAVARVREVAGAKPFE 905

Query: 610  MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS-KLFLLANSISSSRANTSTDGVSIPSVI 668
            ++ ++ ++   D   +   +     LG G  S    ++  +        + +   I  V+
Sbjct: 906  VVFLDWQMPGMDGIETARAI-----LGLGLTSPPHMIMVTAHGREEVMKAAESAGIEDVL 960

Query: 669  MKPLRSSMLAASLQRAMGVGNKGN----IRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            +KP+  S++  ++ RA+G   +G+        E+   +L   L G ++L+ +DN+ N +V
Sbjct: 961  IKPVNPSIMFDAVMRALGAALEGDPEEAAAGREVSDDALAS-LRGLRVLLAEDNDFNQQV 1019

Query: 725  AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
            A   L   G  V   E GK A +++M    +D   MD+QMP MDG  AT+ IR +   F 
Sbjct: 1020 ATELLADGGVEVEVAENGKIAVDMVMAA-PYDMVLMDMQMPVMDGVAATREIRRL--GFG 1076

Query: 785  NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
            +                   +P++AMTA+ +QA  + C  +GM+ Y++KP + ++L+
Sbjct: 1077 D-------------------LPVIAMTANAMQADRDRCAAAGMNDYLTKPIDPDELF 1114


>gi|410724306|ref|ZP_11363504.1| PAS domain S-box [Clostridium sp. Maddingley MBC34-26]
 gi|410602311|gb|EKQ56792.1| PAS domain S-box [Clostridium sp. Maddingley MBC34-26]
          Length = 949

 Score =  261 bits (668), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 81/591 (13%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           + + K +AEAA++AKSQFLA +SHEIRTP+NG+ G L++L  + L + Q++++R A+++ 
Sbjct: 313 LYKAKVEAEAANIAKSQFLANMSHEIRTPINGIFGFLELLETSNLSLEQKEFIREAKSAS 372

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
           + L+ +IN++LD +K+E+ KL +E++ FNLR  ++D +SL   K+ +KG+EL   I   V
Sbjct: 373 EMLLYIINDILDFSKIEAKKLTMESIEFNLRTAIEDAVSLLVPKATNKGIELYSMIKANV 432

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
           PE +IGDP RF+Q++ NL+ N++KFTE G I V        +D +  E E++        
Sbjct: 433 PEVVIGDPSRFKQVLNNLISNAVKFTESGEISVA-------IDCLVEENEIAL------- 478

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                             L   V+DTG GI  E    IF  F Q
Sbjct: 479 ----------------------------------LSFEVKDTGIGIKAENIPNIFQSFSQ 504

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
              S +R +GGTG+GL+IS  LV  M GEI   S    GSTF F          +     
Sbjct: 505 ADTSTTRKYGGTGLGLAISSELVKMMGGEICVESKFGEGSTFKFNVKLKIAKRVA----- 559

Query: 546 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
                +P  +  +      LV+D      ++ + ++Q  G++V    D    ++ I S +
Sbjct: 560 -----EPIYMFEKLDHANILVIDDNANNREIVKLYLQENGLKVYEAGDAGSGITTIISNA 614

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
              N I +    +E          N L+ +      KL LL  S +      S       
Sbjct: 615 NTNNKINIAIIDYEMPGMSGYELANALKNIPIAKDVKLILLT-SYAKRECGKSAKEFGFS 673

Query: 666 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNVNLK 723
           S + KP+R   L   +  A+G+  +    +       ++ +   L  +IL+V+DN VN K
Sbjct: 674 SYLTKPIRRDDLIRCVAVALGLKQEEEEEHEIEMESGIKEIQTQLKPRILLVEDNEVNRK 733

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           +  + LK +         G +A + +     +D  FMD QMP MDG+E+T  IR++E + 
Sbjct: 734 IFISMLKSHNMDCDVALDGSEALKAV-SEKDYDIVFMDCQMPVMDGYESTAKIRQLEGD- 791

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
                               H  I+A+TA+ ++    +C+++GMD Y+SKP
Sbjct: 792 ------------------KKHTKIIAVTANAMEGDSVKCIKAGMDDYISKP 824


>gi|218782287|ref|YP_002433605.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
            AK-01]
 gi|218763671|gb|ACL06137.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
            AK-01]
          Length = 1349

 Score =  261 bits (668), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 186/599 (31%), Positives = 283/599 (47%), Gaps = 98/599 (16%)

Query: 255  AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINE 314
            AA+ AK +FLA +SHEIRTPMNG++GM  +L DT L+  Q+D ++T  +S ++L+ +IN+
Sbjct: 695  AANKAKGEFLANMSHEIRTPMNGIIGMASLLEDTPLNNEQKDLLQTISSSAESLLRIIND 754

Query: 315  VLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG 374
            +LD +K+E+GKL+LE + F+ R+ ++DV +L +  ++ KG+++   IS +VP  ++GDPG
Sbjct: 755  ILDYSKIEAGKLDLERIEFDPRSTVEDVTALMAKTAEQKGLQITSLISHKVPSKVVGDPG 814

Query: 375  RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHS 434
            R RQ++ NL GN+IKFT KG + V   + EE                             
Sbjct: 815  RLRQVLMNLTGNAIKFTSKGEVIVRALVDEE----------------------------- 845

Query: 435  WKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 494
                   ++ G+T  F+            + DTG G+P    S ++  F Q  PS +R +
Sbjct: 846  -------DRGGATLRFE------------IIDTGIGVPQSRLSSLYESFTQADPSTTRRY 886

Query: 495  GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNS 554
            GGTG+GL+ISK L   M G+IG  S    GS F FT               + M+  P +
Sbjct: 887  GGTGLGLTISKQLCRLMGGKIGAESKEGEGSLFWFTVKM---------ERPRNMDVAPPA 937

Query: 555  VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK-------- 606
              S  QG + L+ D R I         +    QVE  +   +CL  +   ++        
Sbjct: 938  PVS-LQGKRILLADARHINRMALTEMFRMWRCQVEHAASGKKCLELLRQATEQGREFDCL 996

Query: 607  IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
            II+  L + E  E         + N+            +LA             G+    
Sbjct: 997  IIDYSLADMEGIE---------LGNIILHDPSLNHNQLILAAPPGMLGEGGKLRGIGFAG 1047

Query: 667  VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR---KILIVDDNNVNLK 723
             + KP R S L   L   +   +K   +  E   M  RH L+     ++L+V+D  VN K
Sbjct: 1048 YLTKPFRHSQLKDMLLAVLAKEDKA--QAGESRKMVTRHTLMENSKLRVLLVEDQMVNQK 1105

Query: 724  VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
            VA   ++  G  VV  + G++  E       FD  FMD+QMP MDG  AT  IR++E   
Sbjct: 1106 VAVKIIQNMGHGVVVADNGQEGLEAF-KNGAFDIVFMDVQMPVMDGLAATAAIRKLESE- 1163

Query: 784  NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
             NR R                +PI+A TA  ++   E  L +GMD Y++KP + + L R
Sbjct: 1164 ENRAR----------------IPIIAFTAHAMEGDKERFLSAGMDDYLTKPVKKDALTR 1206


>gi|452966229|gb|EME71242.1| sensor protein gacS [Magnetospirillum sp. SO-1]
          Length = 965

 Score =  261 bits (668), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 202/703 (28%), Positives = 322/703 (45%), Gaps = 128/703 (18%)

Query: 175 VSDDGLWLVSTLNFGD-----PFRKHEMRCRFKQKAPWPLLAISTS---------IGILV 220
           ++DD        N  D     PFR    R R     P   L ++           +G   
Sbjct: 230 IADDTPMEARRQNLADMEARRPFRDFVYRTR-NMSGPGRFLRVNGKPVFGPAGEFLGYRG 288

Query: 221 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
            AS +    +A     A   E    + + K+ AEA +  KS+FLAT+SHEIRTPMNGV+G
Sbjct: 289 TASDITEEIEAEARLKATQAEMERRLRDAKEAAEAGNRIKSEFLATMSHEIRTPMNGVIG 348

Query: 281 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
           M  +L+DT L   Q+ +  T + SG++L+++IN++LD +K+E+GKL+L+   F L  +++
Sbjct: 349 MTGLLLDTRLSEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVE 408

Query: 341 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
            V+ + + ++  KG+E+A  I  R+   +  DPGR RQ++ NL GN++KFTEKG + +  
Sbjct: 409 SVVDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEA 468

Query: 401 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 460
            L+E               +  ++ + V D                              
Sbjct: 469 TLLE------------PRGEAQMARFDVRD------------------------------ 486

Query: 461 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520
                 +G GI  EAQ R+F+ F QV  S +R +GGTG+GL+ISK L   M GE+G  S 
Sbjct: 487 ------SGIGIAPEAQHRLFSMFSQVDASTARRYGGTGLGLAISKKLAELMGGEVGMESA 540

Query: 521 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS-SEFQGMKALVVDPRPIRAKVSRY 579
           P  GS F  T      +              P S++  + +  + LVVD  P+   +   
Sbjct: 541 PGQGSRFWITLPLDLLA--------------PQSLAPPDLRNRRVLVVDDNPVNRDIIER 586

Query: 580 HIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL-------FVNNL 632
            ++  G++V       Q  ++  +G + +    V  E WE     S +        V  +
Sbjct: 587 QLRAFGVRV-------QACAEAGAGMEELTRAAVSGEPWEVAVIDSQMPMVTGPEMVRMI 639

Query: 633 RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG- 691
           R +     S   ++  S     A  + D  +I   + KPLR S L  ++ R +G+ ++  
Sbjct: 640 RAI--PMLSGTRIIVTSSQGLAAEPNQDKAAIDGFLHKPLRQSTLLDTIGRVLGLSDRPA 697

Query: 692 -----NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT 746
                       P  + R L    +IL+ +DN VN +VA   L++ G +V  V  G +A 
Sbjct: 698 HSAGHEQEETGAPESAGRRL----RILVAEDNPVNQQVALGLLRKLGHSVDVVGDGAEAL 753

Query: 747 EL--LMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH 804
           E   L+P   +D   MD+QMP MDG EAT+ IR +                         
Sbjct: 754 EAVRLLP---YDLVLMDVQMPGMDGLEATRAIRAL-------------------ATPAAR 791

Query: 805 VPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
           +PI+AMTA+ ++   + C  SGM+GY+SKP +  +L   ++ +
Sbjct: 792 IPIVAMTANAMRGDDQICFDSGMNGYISKPIDRRKLAEALAPY 834


>gi|414079219|ref|YP_007000643.1| multi-sensor hybrid histidine kinase [Anabaena sp. 90]
 gi|413972498|gb|AFW96586.1| multi-sensor hybrid histidine kinase [Anabaena sp. 90]
          Length = 1311

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 190/598 (31%), Positives = 299/598 (50%), Gaps = 86/598 (14%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            +++AE+A  AKS FLA +SHEIRTPMNGVLGM  +L++T L+  QQD++ T + SG AL+
Sbjct: 768  RQEAESALQAKSSFLANMSHEIRTPMNGVLGMTSLLLETPLNPEQQDFLETVRTSGDALL 827

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            SLINE+LD +K+E+GK+ LE + FNL   + +V+ L + ++ DKG+E+A  I   VP  +
Sbjct: 828  SLINEILDLSKLEAGKMMLETLDFNLSTCIQEVIELLAPQAHDKGLEIAALIPADVPIYI 887

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GD  R RQ+I NLMGN IKFT +G + V + L+ E  D+  ++                
Sbjct: 888  QGDASRLRQVIMNLMGNGIKFTSQGKVIVQLELISETDDTATIQ---------------- 931

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                             ++ DTG GI  E ++ +F PF QV  S
Sbjct: 932  --------------------------------FAIIDTGIGITTEDKNNLFQPFTQVDAS 959

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            I+R +GGTG+GL+I + LV  M G+IG  S    GS F F   F     + +++   Q+ 
Sbjct: 960  ITRKYGGTGLGLAICQQLVTLMGGKIGLNSEIGKGSKFWFNLSFTKQPESVSQNQDYQIL 1019

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ---LQCLSQIASGSK 606
            +Q           + LVV+   I  ++  +     G+ ++ V      L  L   A+   
Sbjct: 1020 SQ----------RRLLVVNNNTISREILHHQAISWGMHIDEVDSAIAGLAALETAATQQM 1069

Query: 607  IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
              ++ +++ ++ E D    TL +  +RK        L +L  +        + D +   S
Sbjct: 1070 PYDIAIIDMQMPEIDG--LTLGI-QIRKNPAIANVPLIMLTCTNQRDEVKKALD-IGFIS 1125

Query: 667  VIMKPLRSSMLAASLQRAMGVGNKGN----IRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
             ++KP++ + L  ++   +G  +K N      N ELP++S ++     K+L+ +DN VN 
Sbjct: 1126 YLVKPIKPTRLLDTIMNIVGSQSKINNSQIAINEELPAISNKN-TSKLKLLLAEDNLVNQ 1184

Query: 723  KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
            KV    L+  G     V  G++  ELL     +D  FMD QMP +DG  ATK IR     
Sbjct: 1185 KVFLKQLQNLGYQADAVANGQEVLELL-DKIAYDLIFMDCQMPILDGLAATKEIR----- 1238

Query: 783  FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                 RR   S   ++        ++A+TA+ ++   + CL +GMD Y+SKP   ++L
Sbjct: 1239 -----RRPLSSFPKHQ-----QPVVIAITANAMKEDQKICLDAGMDDYLSKPVAKDKL 1286


>gi|262404023|ref|ZP_06080578.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
 gi|262349055|gb|EEY98193.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
          Length = 1323

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 193/633 (30%), Positives = 309/633 (48%), Gaps = 103/633 (16%)

Query: 221  IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
            +  +VG +   T  ++ + E     + E K  A+A   AK  FLA +SHEIRTPMN +LG
Sbjct: 573  VNGIVGLLLDLTERKVMEQE-----LREAKDAADAMSQAKGDFLANMSHEIRTPMNAILG 627

Query: 281  MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
            M  + ++T+LD TQ+ YV     S K L+ +INE+LD +K+E+GKL +E + FNL  +LD
Sbjct: 628  MAHLALNTKLDTTQRKYVTRINESAKNLLGIINEILDFSKIEAGKLNVERIDFNLDDVLD 687

Query: 341  DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
            +V ++ S K+Q+KG+E  + I   +P  LIGDP R  Q+I NL GN++KFT +G I +T 
Sbjct: 688  NVTAVISLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVIVNLCGNAVKFTHQGEIVITA 747

Query: 401  YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 460
             +           ++L+    TL             GF                      
Sbjct: 748  RV-----------SQLNDQYVTL-------------GF---------------------- 761

Query: 461  IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520
              +V+DTG GI  E  + +F  F Q   SI+R +GGTG+GLSISK LV  M G+I   S 
Sbjct: 762  --AVKDTGIGIAKEKLTDLFNAFSQADSSITRQYGGTGLGLSISKQLVELMGGQISVRST 819

Query: 521  PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVS 577
               GS F F+ V G   +   +            ++    G+   + LVVD       + 
Sbjct: 820  EGEGSIFEFSVVCGLQEAKMRD------------IAQPVHGLADKRVLVVDDNDSARNIL 867

Query: 578  RYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637
               +  +   V  VS+  + LS+I    K  +M+ V+   W          +  ++ LG 
Sbjct: 868  DSLLTAMRFNVVTVSNGFEALSEIQ--HKKFDMLFVD---WNMPGMNGIELLTRVQSLGL 922

Query: 638  GFQSKLFLLANSISSSRANTSTDGVS---IPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 694
              ++K FL    +++   + + DG +   + ++I+KP+  S L  ++  + G+ +  +  
Sbjct: 923  REKTKCFL----VTAYGRDINLDGENGKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKH 978

Query: 695  NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
            +   P    +    G+ +L+V+DN VN +VA   L+  G  V     G++A E +    +
Sbjct: 979  SEHHPHS--KPNFKGKSVLLVEDNEVNQEVALGLLQDTGLRVTVANNGQEALEKI-EQAR 1035

Query: 755  FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
            FD   MD+QMP MDG  ATK IR      + R +                +PI+AMTA+ 
Sbjct: 1036 FDLVLMDMQMPVMDGITATKRIRA-----DKRWK---------------DLPIVAMTANA 1075

Query: 815  IQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
            +    E C ++GM+ ++SKP + ++ Y  + +F
Sbjct: 1076 MTVDIERCTQAGMNDHLSKPIDIDKFYSVLKQF 1108


>gi|99078583|ref|YP_611841.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99035721|gb|ABF62579.1| two-component hybrid sensor and regulator [Ruegeria sp. TM1040]
          Length = 770

 Score =  261 bits (667), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 190/643 (29%), Positives = 309/643 (48%), Gaps = 105/643 (16%)

Query: 206 PW----PLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKS 261
           PW       A++ S+G+L              +  A+ +E    +   +++AE A  AKS
Sbjct: 203 PWYSSREFQALNVSVGVLE-------------DSFAERDEREKALEHAREQAEIASRAKS 249

Query: 262 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKV 321
           +FLA +SHEIRTPMNGV+GM ++L +TEL   Q+ Y  T   SG AL+S+IN++L  +K+
Sbjct: 250 EFLANMSHEIRTPMNGVIGMAEVLRETELTPDQELYTETIVKSGNALLSIINDILSFSKI 309

Query: 322 ESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIIT 381
           E+GKLEL   +FNLR +++DV+ L + K+ +K V+L +     + E   GD GR RQI+T
Sbjct: 310 EAGKLELTQATFNLRTVIEDVIMLLAPKAAEKWVQLTLRYDPDLAEFYDGDAGRIRQIVT 369

Query: 382 NLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTF 441
           N++GN++KFT +G + + V  V                                      
Sbjct: 370 NVVGNAVKFTSRGSVHIDVTGV-------------------------------------- 391

Query: 442 NQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGL 501
                      +   L++L +SV DTG GIP E   RIF  F QV  + +R   GTG+GL
Sbjct: 392 -----------ARGQLMDLRISVVDTGIGIPAEKLDRIFHAFEQVDGAATRNFEGTGLGL 440

Query: 502 SISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQG 561
           +IS  L+  MKG I   S    GS FT          TS+      +  QP S      G
Sbjct: 441 AISTRLLQMMKGRIHVTSSEGKGSVFTIDISL----PTSDRAPVAFLPEQPVS------G 490

Query: 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC---LSQIASGSKIINMILVEQEVW 618
           + AL+VD   +  ++    ++  G++V   +  ++    L ++   +   ++I ++  + 
Sbjct: 491 LHALIVDDLELNRRILGERLRSWGLRVTEAASAMEAMLHLDEMRDATDTCDLIFLDYNMP 550

Query: 619 EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLA 678
           + D     L +  L        S   ++ +S+  + + +    + +   ++KP+R+  L 
Sbjct: 551 DCDGYELALRIRGLPNTA----SVPIIVISSVDPALSQSMLADIEVCHQVLKPVRADDLR 606

Query: 679 ASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR-KILIVDDNNVNLKVAAAGLKRYGAAVV 737
             + +A+G G+    R    PS S    ++ R K+L+ +DN  N  V    LK     ++
Sbjct: 607 GVISQALGAGSAVEERA---PSGSEDAKIMQRIKVLMAEDNRTNQVVVTRMLKSESVDII 663

Query: 738 CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAY 797
               G++A E+ +   + D   MD+ MP MDG +ATK IR++E+    R           
Sbjct: 664 IASNGQEAIEMYL-RERPDVILMDMMMPVMDGLDATKAIRKIENETGVR----------- 711

Query: 798 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                  VPI+A+TA+ +Q+  E CL  GMD ++SKP   + L
Sbjct: 712 ------QVPIIALTANALQSHEEACLEVGMDDFLSKPIRKQAL 748


>gi|301057596|ref|ZP_07198676.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300448320|gb|EFK12005.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 1052

 Score =  261 bits (667), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 201/641 (31%), Positives = 310/641 (48%), Gaps = 97/641 (15%)

Query: 231  ATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL 290
             TV  I + +E      E + +AE A+ AKS+FLA +SHEIRTPMN V+G  D+L+D+ L
Sbjct: 478  GTVMDITERKETERLQQEARDRAERANAAKSEFLANMSHEIRTPMNAVIGFTDLLLDSGL 537

Query: 291  DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKS 350
            D  Q DY +T + SG+ L+SLIN++LD +K+E+G L+ E + F+   +  D+  +   + 
Sbjct: 538  DDIQMDYAKTIKQSGEGLISLINDILDFSKIEAGDLDFEEIDFDPELLAYDICDMIRPRI 597

Query: 351  QDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 410
             +K +E+  +I D VP+ + GDP R RQ++TNLM N+ KFTE G I +          S+
Sbjct: 598  GEKPIEILCHIGDTVPDHIKGDPTRVRQVLTNLMANAPKFTEAGEIEL----------SL 647

Query: 411  EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
            +VE E                            +G            + L  SV DTG G
Sbjct: 648  DVEEE---------------------------DEGR-----------VKLHASVRDTGIG 669

Query: 471  IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
            I       IF PF Q   S +R +GGTG+GLSI K +   M G++   S    GS F FT
Sbjct: 670  IAGNKLELIFDPFQQADGSTTRKYGGTGLGLSICKQISRLMGGDVWAESDEGKGSIFHFT 729

Query: 531  AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 590
            A  G   + +    +      P S+S    G KAL+VD      K+   +++ +GI++ +
Sbjct: 730  AWLGKSETKAARPYT------PVSLS----GKKALLVDDNDTNLKILAAYLKPVGIRLVL 779

Query: 591  VSDQLQCLSQIASG-----------SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639
            ++  +  L  + S            + I   I+   EV  +      LF + +  L    
Sbjct: 780  LNKGVDVLPLLESAIGEQDPFDICITDIQMPIMSGYEVARQ----IRLFESPVSGLQTSI 835

Query: 640  QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE-- 697
            +S   +  +S+    A    + V     + KP+R   L   L+R +G    G+ RN    
Sbjct: 836  RSLPLMALSSVRGQDAKRCRE-VGFDGFLGKPIRRERLYRMLERILGAAVAGDQRNSVEQ 894

Query: 698  ---LPSMSLR-HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH 753
               +   S+R  +    +IL+ +DN VN K+A   LK+ G  V     G++A E+LM   
Sbjct: 895  GEIMTQYSVREEMKRSVRILLAEDNPVNQKLAKIMLKKAGYQVEVANNGREAIEILMASR 954

Query: 754  Q-FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH------VP 806
              F   FMD+QMPEMDGF AT+ IR +E             +      ++FH      +P
Sbjct: 955  NGFHLIFMDVQMPEMDGFTATREIRRLESE----------HVLKPPQCTDFHASTIARIP 1004

Query: 807  ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
            I+AMTA  ++   E C+ +GMD Y++KP + E ++  V ++
Sbjct: 1005 IIAMTAHAMKGDREACIDAGMDDYITKPIKREGVFSIVEKW 1045


>gi|383764048|ref|YP_005443030.1| putative two-component hybrid sensor and regulator [Caldilinea
           aerophila DSM 14535 = NBRC 104270]
 gi|381384316|dbj|BAM01133.1| putative two-component hybrid sensor and regulator [Caldilinea
           aerophila DSM 14535 = NBRC 104270]
          Length = 731

 Score =  261 bits (667), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 192/619 (31%), Positives = 303/619 (48%), Gaps = 105/619 (16%)

Query: 238 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           ++E+       L  +AEAA  AKS+FLA +SHEIRTP+N V+GM  +L+D+ L   Q+++
Sbjct: 185 QLEQALEQARRLAVEAEAASRAKSEFLANISHEIRTPLNAVIGMTTLLLDSALTAEQREF 244

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
             T + SG+AL+SL+N+VLD +K+E+G+LELE + F+    +++ +SLF+ ++  KG+EL
Sbjct: 245 AETIRISGEALLSLLNDVLDFSKIEAGRLELERIPFDAMKCVEEAVSLFARQASAKGIEL 304

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            +   + +P+ ++GDP R RQI+ NL+ N++KFT +G I V+V+        +E +  +S
Sbjct: 305 VLLPENVLPDRVMGDPVRLRQILINLVNNAVKFTHEGEIVVSVW--------VEWDAAMS 356

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
           S    +   P    C                           L  SV DTG GIP E + 
Sbjct: 357 SPAEAMESVP----C--------------------------TLRFSVRDTGVGIPAERRG 386

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           R+F  F QV  S +R +GG+G+GL+I++ L   M G++   S P +GSTF FT       
Sbjct: 387 RLFQAFSQVDSSTTRKYGGSGLGLAIARNLCRLMGGDMWVESEPGVGSTFFFTV------ 440

Query: 538 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
                  S+ +   P+   S F G   LV+D      K   +  +RLG++   V+ + + 
Sbjct: 441 ------RSEAVAVTPSYQESPFAGRILLVLDDNRAARKAFMFWAERLGMKAVAVASEEEA 494

Query: 598 LSQIASGSKIINMILVEQEVWEKDTSVST-LFVNNLRKLGCGFQSKLFLLANSIS---SS 653
              +     + ++ LV+ ++      +S  L   N+  +    Q       N I    + 
Sbjct: 495 FQILEEA--LPDLALVDGDLSPPSAPLSMHLRGRNIPAIFTTIQQ------NGIQQNETQ 546

Query: 654 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM--------SLRH 705
             N + + + I   + KP+  + L   ++RA+G          +LPS+        S   
Sbjct: 547 HQNAADNDLRIEIWLRKPVFFASLLEQVRRALG----------QLPSVPEKRRSIASRLD 596

Query: 706 LLLGRK----ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761
             LG++    IL+V+DN VN KVA   L+R G        G +A        ++D   MD
Sbjct: 597 ATLGQRRPLSILLVEDNPVNQKVALMMLRRLGYTPDLATNGAEAVA-AQQRREYDLVLMD 655

Query: 762 IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 821
           + MPEMDGFEA + IR +       +RR  +              I AMTA V +A    
Sbjct: 656 LHMPEMDGFEAAQRIRRLP------LRRQPL--------------IYAMTAAVTEADLAG 695

Query: 822 CLRSGMDGYVSKPFEAEQL 840
              +GMDG + KP   EQL
Sbjct: 696 VREAGMDGVIPKPVRVEQL 714


>gi|239907556|ref|YP_002954297.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797422|dbj|BAH76411.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1011

 Score =  261 bits (667), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 203/666 (30%), Positives = 324/666 (48%), Gaps = 105/666 (15%)

Query: 205 APWPLLAISTSIGILVIASLVGHIFQATVNRI---AKVEEDYHGMMELKKKAEAADV--- 258
           +PW +  ++    + ++A L   + +A  +R+    +++E       L+K  EAA+    
Sbjct: 315 SPWMMTFVAGGFSLALLAGL-WQLMRANSDRMKLAGRLDEQSRMNDVLQKAKEAAESGSR 373

Query: 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 318
           AKS FLA  SHEIRTPMNG++GM ++L+ T L   Q ++VRT   S   L+++IN++LD 
Sbjct: 374 AKSAFLANTSHEIRTPMNGIIGMCNLLLGTRLSDKQLEFVRTVHYSANTLMAVINDILDF 433

Query: 319 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 378
           +K+++GK  LE + F+LR +L+  L   +   Q KGVEL + +S  +P  L GDP R +Q
Sbjct: 434 SKIDAGKFSLEIIEFDLRRVLNMTLRPLTIACQQKGVELILVVSPHMPVFLRGDPARLQQ 493

Query: 379 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 438
           +I NL+GN+IKFTE+G + V V                                      
Sbjct: 494 VINNLVGNAIKFTERGEVAVCV-------------------------------------- 515

Query: 439 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 498
                      F S S  +  +  SV+DTG G+  + Q  IF PF QV  S++R  GGTG
Sbjct: 516 ----------DFLSESDGVAYIRFSVKDTGIGMSPQQQEIIFKPFEQVDSSLTRRFGGTG 565

Query: 499 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 558
           +GL+IS +L+  M G++   SI   GS F F             +        P+  SS 
Sbjct: 566 LGLAISSHLIELMGGQLSVESILGKGSEFFFEIGLAVAEQAPRAYWV------PD--SSV 617

Query: 559 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI----ASGSKIINMILVE 614
             G+  LVVD       + R  +      VE   D  + L+ +    A G+  I ++L +
Sbjct: 618 LDGLNVLVVDDHATNRAILRELLAGWKALVEEAKDGFEALTILKEHEAQGNP-IRLLLSD 676

Query: 615 QEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI----MK 670
            ++   D          + KL CG     F+L   ISSS+     +G   PS++    +K
Sbjct: 677 LQMPGID---GLALAQRVEKL-CGSHPPAFIL---ISSSQ--IELEGGIAPSIVKDFLLK 727

Query: 671 PLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KILIVDDNNVNLKVAAAG 728
           P   S +   +   + +G+   +  +++ S S+  + LG    I++ +D+ VN +V +  
Sbjct: 728 PFDPSHVLDCV--LISLGHAVKMTQFQVES-SIETVPLGEGLDIMVAEDSPVNQRVISHV 784

Query: 729 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
           L + G +   VE G+ A   L    +FDA  MD+QMP MDG EAT+ IRE++ +  N   
Sbjct: 785 LHKMGHSFTIVENGQDAVT-LWERRKFDAILMDVQMPVMDGIEATRRIRELDAHCEN--- 840

Query: 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
                           VPI+A+TA  +Q+  E CL +GM+ Y+SKP +   L  +++++ 
Sbjct: 841 ---------------PVPIIALTAHAMQSDRERCLDAGMNDYLSKPLDPGMLAEKLAKWA 885

Query: 849 PPIPDR 854
            PI ++
Sbjct: 886 SPIRNK 891


>gi|443474974|ref|ZP_21064938.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
 gi|443020231|gb|ELS34214.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
          Length = 1137

 Score =  261 bits (667), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 194/611 (31%), Positives = 295/611 (48%), Gaps = 103/611 (16%)

Query: 247  MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGK 306
            +E  K AEAA+ AKSQFLA +SHEIRTPMN V+GM D+L DT L   Q+ YV T +  G+
Sbjct: 488  LEAAKFAEAANQAKSQFLAVMSHEIRTPMNAVIGMTDILQDTPLSPQQRQYVNTIRQGGE 547

Query: 307  ALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVP 366
             L+S+IN +LD +++ESGK ELE   F L+  +D+V  L + +  +K +EL   I   +P
Sbjct: 548  VLLSVINNILDFSRIESGKFELEEQPFYLQKCVDEVFELMTSRMAEKSLELFALIDPNIP 607

Query: 367  ETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGY 426
            + +IGD  R RQI+ NL+ N+IKFT  G I +T+                          
Sbjct: 608  QQIIGDYSRLRQILVNLVSNAIKFTASGEIIITI------------------------NS 643

Query: 427  PVADR-CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
             + DR  H ++                       L+  V DTG GI  EA  R+F  F Q
Sbjct: 644  QLVDRDSHRYE-----------------------LLFEVSDTGIGILPEAIGRLFQAFSQ 680

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               SI+R +GGTG+GL+I K L   M G+IG  S    GSTF+F+ +     + + + +S
Sbjct: 681  ADSSINRQYGGTGLGLAICKQLCELMGGKIGVQSQVGEGSTFSFSIM---AQAIAFDRHS 737

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
            + M     +++ E +G + L V   P        +  +  I ++     ++ L  + + S
Sbjct: 738  ELM-----AIAPEIKGKRILSVHHSPRFQTAISLYTDKWEIDIKFAYSAIEALQFLTNES 792

Query: 606  KIINMILVEQEVWEKDT--SVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
               + +L+E+++ E D+          N++ +    +  LF       SS  NT++  + 
Sbjct: 793  --FDAVLIERQLAEADSPEGFGLELAQNIQAVFPNLKLVLF-------SSINNTNSIPIK 843

Query: 664  IPSVIMKPLRSSMLAASLQRAMGVGN---KGNIRNWELP----SMSLRHLLLGRKILIVD 716
                I+KPL +S L  +        N    GN  N+  P    + + R+ L   KILI +
Sbjct: 844  FADYIIKPLSASKLYQAFVNIFSTQNFKLSGN--NFSAPILDANFAKRYPL---KILIAE 898

Query: 717  DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
            DN +N K+    L+  G  V  VE G+KA   +   + +D  FMDIQMP MDG  A+K I
Sbjct: 899  DNPINQKILWLMLETLGYNVASVENGQKALNAI-ANNAYDLIFMDIQMPIMDGLTASKNI 957

Query: 777  REMEHNFNNRIRRGEVSIEAYENVSNFHVP-ILAMTADVIQATYEECLRSGMDGYVSKPF 835
            R M                      + H P I+ ++A+    +Y+  L SGMD Y++KP 
Sbjct: 958  RLM----------------------SIHQPWIIGLSANAFVESYDLALASGMDDYLTKPL 995

Query: 836  EAEQLYREVSR 846
            +   L   + R
Sbjct: 996  QTASLIAALQR 1006


>gi|71281538|ref|YP_270817.1| sensory box histidine kinase/response regulator [Colwellia
            psychrerythraea 34H]
 gi|71147278|gb|AAZ27751.1| sensory box histidine kinase/response regulator [Colwellia
            psychrerythraea 34H]
          Length = 1683

 Score =  261 bits (667), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 184/610 (30%), Positives = 294/610 (48%), Gaps = 85/610 (13%)

Query: 245  GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
             ++E K+ ++ A  AKS FLA +SHEIRTPMN ++GM  + +  ELD   ++YV     +
Sbjct: 930  ALLEAKRISDDASKAKSDFLANMSHEIRTPMNAIMGMSHLALGCELDRKPKNYVTKVYKA 989

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             ++L+ +IN++LD +K+E+GKL++E + F+L     D+ ++   K+ +K +EL   IS  
Sbjct: 990  AESLLGIINDILDFSKIEAGKLDIEVIEFSLHDTFADLANIIGLKAGEKNLELLFDISPD 1049

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            VP  L GDP R  QI+ NL GN++KFTE+G + ++V +V  V                  
Sbjct: 1050 VPVNLKGDPLRLNQILINLAGNAVKFTEQGQVVISVNVVTNV------------------ 1091

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                       +S  D INL  SV+D+G G+  E Q ++F  F 
Sbjct: 1092 --------------------------STSHCDDINLEFSVKDSGIGMDDEQQKKLFQSFS 1125

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   S +R +GGTG+GL+ISK LV  M G+I   S    GS F+FT          N   
Sbjct: 1126 QADSSTTRKYGGTGLGLTISKKLVELMNGQIWLESKAGEGSCFSFTTTLQVSDVIDNRLV 1185

Query: 545  SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             QQ         S     + L+VD   +   V    ++     V   +   + +  +   
Sbjct: 1186 EQQ--------KSFLADKRILIVDDNLLALDVLSSILKSFHCHVVAANSGEEAIELVKQA 1237

Query: 605  SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS- 663
            +   + I+++  + + D  + T    ++ K    +Q   F+L    S++  N + D +  
Sbjct: 1238 TLTFDFIMLDWNMPDLD-GIETY---HIIKSQNNYQDNQFILVT--SNANDNEAVDQLKK 1291

Query: 664  -IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNV 720
             I SV++KP+ SS +   + R  G     N R  +     +++   L G KIL+V+DN +
Sbjct: 1292 RINSVLVKPVTSSSIFDEMMRLNGDEAYSNTREMKRDDELIQNQQHLSGAKILLVEDNEL 1351

Query: 721  NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
            N ++A   LK+    V   E G  A E     H FD   MD+QMP MDGF ATKIIRE  
Sbjct: 1352 NQELALELLKQSNIDVELAENGAIAVEKFSSRH-FDGILMDLQMPVMDGFTATKIIRE-- 1408

Query: 781  HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                                S+  +PI+AMTA+ + +  E+ L SGM+ +++KP     +
Sbjct: 1409 --------------------SDSSIPIIAMTANAMVSDKEKVLASGMNDHITKPINVNTM 1448

Query: 841  YREVSRFFPP 850
            +  ++++  P
Sbjct: 1449 FATIAKWVSP 1458


>gi|126741123|ref|ZP_01756804.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
 gi|126717760|gb|EBA14481.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
          Length = 762

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 192/653 (29%), Positives = 313/653 (47%), Gaps = 103/653 (15%)

Query: 202 KQKAPW----PLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAAD 257
           +   PW       A++ S+G+L  A              A+  E  H + E  K A+ A+
Sbjct: 191 RTSVPWYASREFWALNYSVGVLEDA-------------FAERNEREHALQEACKAADIAN 237

Query: 258 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLD 317
            AKS+FLA +SHEIRTPMNGV+GM ++++DTELD  QQ Y  T   SG AL+++IN++L+
Sbjct: 238 RAKSEFLANMSHEIRTPMNGVIGMAELILDTELDEDQQMYAETISKSGSALLTIINDILN 297

Query: 318 QAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFR 377
            +K+E+GK+EL+   FNL+  ++DV++L S ++  KGVE+ +  +  +PE   GD GR R
Sbjct: 298 FSKIEAGKVELDNAPFNLQVAIEDVVTLLSPRATMKGVEITLRYAPDLPEFFTGDVGRVR 357

Query: 378 QIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKG 437
           Q++TN++GN+IKFT  G++ + V                S +K               KG
Sbjct: 358 QVVTNIVGNAIKFTSTGYVAIDV----------------SGAKGP-------------KG 388

Query: 438 FKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 497
           ++                    L + V DTG GIP E    IF+ F QV  + +R+  GT
Sbjct: 389 YQ--------------------LGIEVLDTGIGIPEERLDDIFSAFEQVDSAATRSFEGT 428

Query: 498 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS 557
           G+GL+IS  L+  M G +   S+   GS FT         +  +                
Sbjct: 429 GLGLAISSRLLSLMGGRVTVKSVAGKGSVFTIRLPLTECDAVPSVQEG----------DF 478

Query: 558 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSDQLQCLSQIASGSKIINMILVE 614
           +F+G+  L+VD   +   +    +   G+Q    E  +  L+ L+ +      ++  +++
Sbjct: 479 DFKGLTCLIVDDLELNRSILSERLTSWGVQCFQAESANRALELLADLRLEKCHLDFAILD 538

Query: 615 QEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRS 674
            ++   D       ++ + +    F     ++ +S+  + A +  +  +I  + +KPLR+
Sbjct: 539 YQMPVTDGRELAKCIHKIPE----FAQVPIVMLSSVEQAMARSVREVENICEIALKPLRA 594

Query: 675 SMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGA 734
           S L   + R + VG   +I +  LP          +K+LI +DN  N  V    LK    
Sbjct: 595 SHLRQVINRVLNVGELPSIPS--LPKSEPEVKTQYKKLLIAEDNRTNQLVVTRMLKNDNY 652

Query: 735 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSI 794
            +     G +A EL     + D   MD+ MP MDG EAT  IRE+E           V+ 
Sbjct: 653 EITIAGNGAEAVELF-KKDRPDLILMDMMMPVMDGVEATLKIRELE----------AVAH 701

Query: 795 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
           EA         PI+A+TA+ ++A  E+CL +GMD ++SKP   + L   + ++
Sbjct: 702 EA-------GCPIIALTANALEAHKEKCLAAGMDDFLSKPINKKSLLETLEKW 747


>gi|17231253|ref|NP_487801.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132895|dbj|BAB75460.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1550

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 211/705 (29%), Positives = 327/705 (46%), Gaps = 128/705 (18%)

Query: 183  VSTLNFGDPFRKH-EMRCRFKQKAPW--PLLAISTSIGILVI---------ASLVGHIFQ 230
            ++ L+ G+  + H E+  +F  KA    P+L      G+L++          S   H+ +
Sbjct: 792  IANLDLGEIQQSHLELLRKFGVKANLVIPILVKDELCGLLIVHQCATSRQWTSFETHLLR 851

Query: 231  ATVNRIA---------KVEEDYHGMMEL-KKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
               +++          +VE      +E+ + +AE A  AKS FLA +SHEIRTPMN VLG
Sbjct: 852  QIADQVGIAVAQAQLLEVETRQRQELEVARSQAELASHAKSAFLANMSHEIRTPMNAVLG 911

Query: 281  MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
            M  ++++T L+  Q+D++ T + SG AL++LINE+LD +K+E+G++ LE ++FNL   ++
Sbjct: 912  MTGLMLETLLNQEQRDFMETIRISGDALLTLINEILDLSKLEAGEMALENLNFNLSTCVE 971

Query: 341  DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
            +VL L + ++  KG+E+A  I   VP  L GD  R RQI+ NL+GN+IKFT  G      
Sbjct: 972  EVLDLLAPQAHSKGLEIAALIYRHVPIQLQGDASRLRQILMNLIGNAIKFTSFG------ 1025

Query: 401  YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 460
                EVV  +E+ +E           P     H                           
Sbjct: 1026 ----EVVMRVELRSE----------TPTTAIIH--------------------------- 1044

Query: 461  IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520
              +V D+G GI LE Q ++FTPF QV  S +R +GGTG+GL+I K LV  M GEIG  S 
Sbjct: 1045 -FAVTDSGLGITLEDQHKLFTPFTQVDASTTRKYGGTGLGLAICKQLVTLMGGEIGVESQ 1103

Query: 521  PNIGSTFTFTAVFGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRY 579
               GS F F   F       S   +   +NN+           + LVVD      K+  +
Sbjct: 1104 LGKGSKFWFEIPFAKQLQPVSFVEDCGLLNNR-----------RLLVVDDHATNRKIIYH 1152

Query: 580  HIQRLGIQVEVVSDQLQCLSQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 636
             + R G+QV+     +  LS I      +K  ++IL++ ++ E D     + +    K  
Sbjct: 1153 QVSRWGMQVDQADRAVAALSMIVEACQQNKPYDVILIDMQMPEMD----GMALGKQIKAN 1208

Query: 637  CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV-----GNKG 691
                    ++  S +          +   + ++KP++SS L  ++   +         K 
Sbjct: 1209 SAIPPTPLIMLTSTNQRDEVQQAIKIGFAAYLVKPVKSSRLLDTIMSVLKTPSQLEAEKL 1268

Query: 692  NIRNWELPSMSLRH--------------LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVV 737
             +++ EL   +L H              +    +IL+ +DN VN KVA   L+  G    
Sbjct: 1269 EVKSQELEKNNLDHSRNHNFTATQAQNSVSTKTRILLAEDNLVNQKVALKQLQSLGYTAD 1328

Query: 738  CVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIE 795
                GK+  +LL  +P   +D   MD QMP +DG EATK I     +     RR      
Sbjct: 1329 VAANGKEVLQLLKQIP---YDLILMDCQMPILDGLEATKEIHRWAESSFASCRRP----- 1380

Query: 796  AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                       I+AMTA+ ++   + CL +GMD Y+SKP   EQL
Sbjct: 1381 ----------VIIAMTANAMKEDKQMCLDAGMDDYLSKPVMKEQL 1415


>gi|386827592|ref|ZP_10114699.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
 gi|386428476|gb|EIJ42304.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
          Length = 762

 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 193/619 (31%), Positives = 297/619 (47%), Gaps = 100/619 (16%)

Query: 234 NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT 293
           + +AK+++    +   K+ AE+A  AKSQFLAT+SHEIRTPMNGVLGM ++L+DT L+  
Sbjct: 227 DMLAKIQKRDKELEHAKELAESASQAKSQFLATMSHEIRTPMNGVLGMTELLLDTGLNER 286

Query: 294 QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDK 353
           Q+    T Q SG+ L+++IN+VLD +K+E+G L L    F++ A+++D L LF+G    K
Sbjct: 287 QRHLAETVQNSGQTLMTIINDVLDFSKIEAGHLALYNSEFDVHALVEDTLDLFAGAIVQK 346

Query: 354 GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 413
            + L  +I+  VP+ L GD  R RQI++NL+ N+IKFTE G + + V  V          
Sbjct: 347 KLALCSHIAANVPKMLSGDLVRLRQILSNLINNAIKFTEVGEVVIKVTQV---------- 396

Query: 414 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 473
                                       N D +           + L  ++ DTG GIP 
Sbjct: 397 ----------------------------NNDATR----------VQLKFAIYDTGIGIPE 418

Query: 474 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533
                +F PF QV  S+SR +GGTG+GL+ISK L   M GEIG  S  N GS F FTA  
Sbjct: 419 AKCPILFQPFTQVDGSMSRRYGGTGLGLAISKQLAQLMGGEIGVESKINQGSLFWFTAWL 478

Query: 534 GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 593
               + +            +    +   ++ L+V  +    ++   ++   G+ V+   +
Sbjct: 479 DKLQTPT-----------VSPAQDKLPALQVLIVAYKNHCVQILAEYLTTWGLHVDFCDE 527

Query: 594 QLQCLSQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           Q   L+Q+ +        +++L+E     K  S++       + +    +S   +L  S+
Sbjct: 528 QSAVLAQVQTAITQHTPYDVVLLELMHNPKQDSIAL-----AQAIKEQQESTHIILIASV 582

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL---- 706
              R  +     +I +++ KP+R + L   L          N+ N   P           
Sbjct: 583 DQVR-KSYLQHPAISAILHKPIRQARLYQCL---------CNVINNPFPQTEAEQTDSTE 632

Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
               KIL+ +DN VN +     L+  G  V  VE G++  + L     +D  FMD QMP 
Sbjct: 633 RFNAKILLAEDNIVNQQYVRLVLEDLGCQVDLVEDGEQVLKQLR-LQAYDLIFMDCQMPH 691

Query: 767 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH-VPILAMTADVIQATYEECLRS 825
           +DG  ATK+IR+                + Y N    H +PI+A+TA  +Q   E CL+ 
Sbjct: 692 LDGLAATKLIRQ----------------QGYLNAKKNHAIPIIALTAHAMQGDREYCLQI 735

Query: 826 GMDGYVSKPFEAEQLYREV 844
           GMD Y+SKP   +QL RE+
Sbjct: 736 GMDDYLSKPVSKQQL-REI 753


>gi|398343867|ref|ZP_10528570.1| multi-sensor hybrid histidine kinase [Leptospira inadai serovar
           Lyme str. 10]
          Length = 856

 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 190/588 (32%), Positives = 289/588 (49%), Gaps = 91/588 (15%)

Query: 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 318
           AKS+FLA +SHEIRTPMNGV+GM ++L+D++L   +++Y    Q SG++L+S+IN++LD 
Sbjct: 341 AKSEFLAMMSHEIRTPMNGVIGMTELLLDSDLTGEKREYAEIIQKSGESLLSIINDILDY 400

Query: 319 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 378
           +K+ESG L LE+  F++    ++ L LF   + +KG++L  +I   VP+ +IGD  R RQ
Sbjct: 401 SKIESGTLSLESKEFSILETAEETLDLFRSSAAEKGIDLICHIDPNVPDRIIGDKLRLRQ 460

Query: 379 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 438
           ++ NL GNS+KFTEKG +F++               E+S  + ++        C      
Sbjct: 461 VLINLFGNSLKFTEKGEVFLS--------------AEVSKKEKSI--------C------ 492

Query: 439 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 498
                                +  SV DTG GIP E Q ++F PF QV  S +R +GGTG
Sbjct: 493 --------------------TIRFSVRDTGIGIPKEKQKQLFNPFYQVDTSSTRKYGGTG 532

Query: 499 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 558
           +GLSIS  L+  M G I   S  N G+TF+F  +   G    N+         P+     
Sbjct: 533 LGLSISYRLIKMMGGRIWLESDINKGTTFSF-EIQAEGVEEKNQV-------VPDINYPG 584

Query: 559 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW 618
            +  K L++D      ++  + +Q LG+     S + + LS +  G      IL E  + 
Sbjct: 585 LENRKILIIDDNATNLRILSHQLQTLGLMTFSSSSKEEALSLLDLG------ILPELALL 638

Query: 619 EKDTSVS--TLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 676
           + + S S        LR+    F   L LL++SIS  +     D + +   + KP++   
Sbjct: 639 DYNLSGSNGVQIAQELRR--KNFLFPLILLSSSISDIKEKEIADQLFLRQ-LSKPVKKKE 695

Query: 677 LAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----KILIVDDNNVNLKVAAAGLKRY 732
           L   +   +  G      N     +  +  LL       +LI +DN +NL +A   L++ 
Sbjct: 696 LEQLVTEILITGTDKGKANRSSSYLEKQKDLLQSTYPFDVLIAEDNEINLSLAKRILQKL 755

Query: 733 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 792
           G   V    GK+    L    +FD   MD+ MPEMDG +AT++IR       N   + E 
Sbjct: 756 GYHPVVAMNGKQVLNRLREA-KFDVVLMDVHMPEMDGIQATQVIR-------NTWPQSE- 806

Query: 793 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
             + Y         I+AMTA  +Q   E CLR+GM+ YVSKP   E+L
Sbjct: 807 --QPY---------IIAMTAAAMQGDREICLRAGMNDYVSKPIVFEEL 843


>gi|315125188|ref|YP_004067191.1| sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315013701|gb|ADT67039.1| sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 1117

 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 188/641 (29%), Positives = 317/641 (49%), Gaps = 104/641 (16%)

Query: 218  ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 277
            ++ + +L+G ++ ++  RI    E    +++ K+ AE A +AKS+FLA++SHEIRTPMNG
Sbjct: 568  LIAVGALIGSLY-SSQQRI----ETEAQLVKAKEAAEQAVIAKSEFLASMSHEIRTPMNG 622

Query: 278  VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337
            VLGML+++  T+LD  Q+ +++ AQ+S ++L+ +IN++LD +K+E+GKL++E + FNL  
Sbjct: 623  VLGMLNIVKATQLDQQQKHHIKLAQSSAESLLGIINDILDFSKIEAGKLDIENIQFNLPR 682

Query: 338  ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 397
            +L +V+  F+ K++     L +  +       I DP R RQI++NL+GN++KFT+ G I 
Sbjct: 683  LLGEVVESFALKAEQNNTTLILDATHITSSEFISDPNRLRQILSNLIGNAVKFTQNGEIL 742

Query: 398  VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 457
            VT  +                                                 + + D 
Sbjct: 743  VTAKI-------------------------------------------------THTLDA 753

Query: 458  INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 517
              L  ++ D+G GI  E Q  +F  F Q   S +R +GGTG+GL+I K L   M GE+  
Sbjct: 754  TVLECAIADSGIGISAEKQPHLFDSFTQADTSTTRQYGGTGLGLAIVKQLCELMSGEVNV 813

Query: 518  VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 577
             S PN GSTF+F            +H + Q            +  +  V+D   +   ++
Sbjct: 814  SSTPNKGSTFSF--FIKIIPQLVQQHEAYQA----------IKNKRIWVIDDCLLNTTIA 861

Query: 578  RYHIQRLGIQVEVVSDQLQCLSQIASGSKI-INMILVEQEVWEKDTSVSTLFVNNLRKLG 636
            +  + R G +V  + D L     I S      N++LV+  ++E       L    L++  
Sbjct: 862  KKQLTRWGGKVSTICDYLSISDYINSHEDTPPNIVLVDSALFEPLYEAQAL---ALKQFL 918

Query: 637  CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR-- 694
                S L ++A  +S +  N +T  ++  +++ KPL        LQ A+    K  I   
Sbjct: 919  IKSNSHLIIMA-PMSYTNKN-ATLPLTEETLVFKPLT----PFDLQNALTA--KSTIEQT 970

Query: 695  --NWELPSMSLRHLL---LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 749
              + +L S++   ++   L   +L+V+DN +N  V AA LK+        E G +A E L
Sbjct: 971  HVDTQLKSLAATEVMTDTLAAHVLLVEDNKINQVVTAAFLKQLNVTFEIAENGAEAVEKL 1030

Query: 750  --MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPI 807
               P + +    MD QMP MDG++AT  IRE         + G+V         N ++ I
Sbjct: 1031 NQNPANTYQLILMDCQMPTMDGYQATIAIREG--------KAGKV---------NKNITI 1073

Query: 808  LAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            +A+TA+ +Q   ++CL +GMD Y++KP  A  L+ ++ ++ 
Sbjct: 1074 IALTANAMQGDKDKCLATGMDDYLTKPLNATTLHSKLQQWL 1114


>gi|383454339|ref|YP_005368328.1| sensory box histidine kinase/response regulator [Corallococcus
           coralloides DSM 2259]
 gi|380732170|gb|AFE08172.1| sensory box histidine kinase/response regulator [Corallococcus
           coralloides DSM 2259]
          Length = 909

 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 186/626 (29%), Positives = 315/626 (50%), Gaps = 96/626 (15%)

Query: 243 YHGMMELKK---KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 299
           YH + +L++    AE A+ AKS FLATVSHEIRTPMN ++GM  +LMDT L   Q+D+  
Sbjct: 224 YHDVTDLQRARQSAEDANQAKSLFLATVSHEIRTPMNAIIGMAGLLMDTALTPEQRDFAS 283

Query: 300 TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 359
           T + SG AL+ L+N++LD +K+E+G++ELE   FNLR  ++ VL L + ++ +K ++L  
Sbjct: 284 TIRQSGDALLGLLNDMLDFSKIEAGRVELEQQPFNLRQCVESVLDLLAMRASEKSLDLGY 343

Query: 360 YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSS 419
           +++D  P +++GD  R RQ++ NL+GN++KFTE+G + ++V                   
Sbjct: 344 HVTDETPVSVVGDGARLRQVLLNLVGNAVKFTERGGVSISV------------------- 384

Query: 420 KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 479
                                   D    P   +   L  L  +V+DTG GI   A++ +
Sbjct: 385 ------------------------DTPRQPL--APGGLFELHFAVQDTGLGITEAARAGL 418

Query: 480 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS--IPNIGSTFTFTAVFGNGS 537
           F PF Q+  S+SR +GGTG+GL+ISK LV  M G +   S  +P  G+TF FT       
Sbjct: 419 FQPFNQLNESVSRRYGGTGLGLAISKRLVEAMGGRLWMESEGVPGKGATFHFT------- 471

Query: 538 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
             + E        +P+++  +  G + LVVD   I  K+    +   G+ +  V    + 
Sbjct: 472 FQAREAPRGGEPLRPDAL--KLHGRRVLVVDDNAINRKLLGRQLAAWGMAIVEVGSGAEA 529

Query: 598 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 657
           LS++ SG++  ++ +++  +   D         ++R+     +  L LL    S  + + 
Sbjct: 530 LSKLESGAR-FDLAILDHRMPLMDGPT---LAAHIRQQRDARELPLLLL---TSFDQRDA 582

Query: 658 STDGVSIPSVIMKPLRSSMLAASLQRAMG--VGNKGNIRNWELPSMSLRHLLLGR----- 710
              G+   +V+ +P+++S L  +L   +   + +   +     P+   R +   R     
Sbjct: 583 QPPGL-FTAVLPRPVKASHLHDALMTCLAQDLISARPMPVTPAPATRERSVFNTRPGEQM 641

Query: 711 --KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768
             +IL+V+DN  N K+A   L+R G        G++   L+    ++D   MD+QMPE+D
Sbjct: 642 PLRILLVEDNPTNQKLALLVLERLGYPADTANNGREGLSLIS-RKRYDVVLMDVQMPELD 700

Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
           G +AT+ +R+             VS + +         ++AMTA+ + A   ECL +GMD
Sbjct: 701 GLQATRQLRQ----------DMPVSEQPW---------VIAMTANAMTADRRECLDAGMD 741

Query: 829 GYVSKPFEAEQLYREVSRFFPPIPDR 854
            ++SKP   E+L   + R +  +P +
Sbjct: 742 DFLSKPIRVEELISALRRAWERLPGK 767


>gi|268679547|ref|YP_003303978.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617578|gb|ACZ11943.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 2035

 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 178/623 (28%), Positives = 295/623 (47%), Gaps = 95/623 (15%)

Query: 236  IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 295
            I+  +E    +   K  AE A   KS FLA +SHEIRTPMN ++GM  + + TEL   Q+
Sbjct: 1288 ISTEKEALEAIQRAKSLAEEATQVKSAFLANMSHEIRTPMNAIIGMAHLALQTELSNQQR 1347

Query: 296  DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 355
            +Y+    ++ K L+ +IN++LD +K+E+GK+  E++ F L  +++ +  L   K+Q+KG+
Sbjct: 1348 NYLVKIDSASKHLLGIINDILDFSKIEAGKMRFESIDFYLEDVMEHLADLSVMKAQEKGL 1407

Query: 356  ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415
            EL   I   +P  L GDP R  QI+ NL+ N+IKFT +G I + V L+            
Sbjct: 1408 ELLFDIETNIPTALRGDPLRLGQILINLVNNAIKFTAQGEIRLFVKLL------------ 1455

Query: 416  LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 475
                                                +  A  ++L+  V DTG GI    
Sbjct: 1456 ------------------------------------AQEAKQVHLLFEVHDTGIGIDEAQ 1479

Query: 476  QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535
            Q+++F  F Q   S +R  GG+G+GL+I K+LV  M+G+I   S    GSTF+F+A F  
Sbjct: 1480 QAKLFEAFSQADLSTTREFGGSGLGLAICKHLVEMMQGKIWVKSTLGEGSTFSFSAQF-- 1537

Query: 536  GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 595
                      Q+   +P     + + ++ L+VD      ++    ++     V  V D  
Sbjct: 1538 --------ELQEEQKKPQFNDEDVRNLRILIVDDNASAREILENILRSFHFNVHSVCDGH 1589

Query: 596  QCLSQIASGSK---IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 652
              LS +    K     N++L++   W          +  +R+     Q  +F++  + S 
Sbjct: 1590 HALSLLKEAQKEPQPYNLVLID---WMMPQLNGIETIRKIREEIVSDQPLMFIMITAYSK 1646

Query: 653  SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG-----VGNKGNIRNWELPSMSLRHLL 707
                   + + +  +++KP+  S L  ++   +G     +  K + +     S+   H L
Sbjct: 1647 EELQKELEELFVDGILIKPISPSTLLNTILNVLGKEVMRLSRKEDKQALYRESI---HAL 1703

Query: 708  LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
             G K+L+V+DN +N ++A   L+R G  +V    GK+A E +     FD   MD QMP M
Sbjct: 1704 RGAKVLLVEDNIINQEIAKEILEREGMDIVVANHGKEALEWI-EKESFDGVLMDCQMPVM 1762

Query: 768  DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
            DGFEAT+++RE  H                       +PILAMTA+ ++   E CL  GM
Sbjct: 1763 DGFEATRLMREGGHT----------------------LPILAMTANAMEGDKERCLACGM 1800

Query: 828  DGYVSKPFEAEQLYREVSRFFPP 850
            + ++SKP +  +L+  ++++  P
Sbjct: 1801 NDHISKPIDMAKLFITMAKWIVP 1823


>gi|22298419|ref|NP_681666.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
 gi|22294598|dbj|BAC08428.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
          Length = 1035

 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 190/645 (29%), Positives = 315/645 (48%), Gaps = 102/645 (15%)

Query: 229  FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT 288
            F  T   I+++ +    +   ++ AE A  AKS+FLAT+SHEIRTPMN ++G+  +L+DT
Sbjct: 463  FVGTWEDISQMMQQQELLEVARQAAEEASRAKSEFLATMSHEIRTPMNAIIGLTGLLLDT 522

Query: 289  ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 348
             L+  QQ++V T + SG AL+ +IN++LD +K+ESGKLELE+  FNLR  +++VL L + 
Sbjct: 523  PLNPQQQEFVNTIRLSGDALLGVINDILDFSKIESGKLELESYPFNLRTCVEEVLDLLAS 582

Query: 349  KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 408
            ++ ++ VELA +I   VP  +IGD GR RQ++ NL+GN+IKFT+KG+  VT+Y       
Sbjct: 583  RAAEREVELAAHIDSGVPCAVIGDMGRLRQVLVNLIGNAIKFTQKGN--VTLY------- 633

Query: 409  SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 468
                   + +    +S Y      +S+                         + +++DTG
Sbjct: 634  -------VKAKPMPMSQYEFMPSYYSY-------------------------LFAIQDTG 661

Query: 469  QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIG------------ 516
             GI     +R+F PF QV  S +R +GGTG+GL I + LV RM G+I             
Sbjct: 662  IGISAAGMNRLFKPFSQVDASTTRQYGGTGLGLVICQRLVERMGGQIWVESKKTGESLVV 721

Query: 517  -------FVSIP--NIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVV 567
                   + SIP    GS F FTA F    + + E         P   +   +  + L+V
Sbjct: 722  GGTPLAVYESIPIAESGSVFYFTARFLLNPNPAPE---------PTDDTCYLENRRVLIV 772

Query: 568  DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL 627
            D      ++    I++  +Q  V       L+ +      +++ +++ ++ E D      
Sbjct: 773  DDNATNRQILALQIKKWKMQPLVAESGPSALA-LLQQQGWVDLAILDLQMPEMDG----- 826

Query: 628  FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687
             V   R++   +     +L  S+ ++   T ++     S+I KP++ S L  +L  ++  
Sbjct: 827  -VTLARQIRAAYGELPLILLTSLGNTL--TESEKALFSSLISKPVKQSTLYNALN-SLFC 882

Query: 688  GNKGNIRNWELPSMSLRHL---LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 744
              +  +      + S  HL   L   +IL+ +DN VN  VA   L++ G        G +
Sbjct: 883  EKQKTVSPKPAAAPSFEHLKAELPPLRILVAEDNKVNQMVALRILEKLGYRGDIAANGLE 942

Query: 745  ATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH 804
              + +     +D   MD+QMPEMDG  AT+ + ++                 ++ +    
Sbjct: 943  VLDAVQ-RQPYDVILMDMQMPEMDGITATREVTQL-----------------FQGLKKPR 984

Query: 805  VPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
              I+AMTA+ +++  + CL +GMD YVSKP   E+L R + +  P
Sbjct: 985  PRIIAMTANAMESDRQLCLDAGMDDYVSKPIRLEELVRALRQCQP 1029


>gi|374294152|ref|YP_005041177.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
 gi|357428150|emb|CBS91102.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
          Length = 1314

 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 191/623 (30%), Positives = 309/623 (49%), Gaps = 109/623 (17%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++A+ A+  KS FLA +SHEIRTPMN V+G+  ++M T+L   Q+DY+    AS ++L+
Sbjct: 536  KEEADRANRQKSDFLANMSHEIRTPMNAVIGLSHLMMKTDLTPRQRDYLDKIHASSRSLL 595

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
             +IN++LD +KVE+GKL +EA+ F++  +L +V ++   K ++KG+EL V ++  VP TL
Sbjct: 596  GIINDILDFSKVEAGKLTIEAIPFHVGDVLQEVATVVLPKLREKGLELIVDLNGDVPGTL 655

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GDP R  Q+I NL+ N++KFTE+G + VTV                             
Sbjct: 656  VGDPLRLGQVILNLVSNAVKFTERGEVVVTVG---------------------------- 687

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                         + G+   ++        L V V DTG G+  E  + +F PF Q   S
Sbjct: 688  ------------GRIGTADDYR--------LEVEVCDTGIGMSPEQTAALFRPFTQADTS 727

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT--AVFGNGSSTSNEHNSQQ 547
             +R  GGTG+GL+I + LV  M G +   S P  GS F F+       G +  +      
Sbjct: 728  TTRRFGGTGLGLAICRQLVELMGGAVSVESRPGEGSIFRFSIRCRVAAGDTADDRLPRHL 787

Query: 548  MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK- 606
            M+             + LVVD       +    ++R G+ VE V+D L  L ++  G   
Sbjct: 788  MDR------------RVLVVDDSDAVRSILTDMLERFGLTVEAVADGLSALRRLEEGQAG 835

Query: 607  ---IINMILVEQEVWEKDTSVSTLFVNNLRKLGC--GFQSKLFLL----ANSISSSRANT 657
                + +++++  + + D       V  LR+L    G Q  + +     A+ +  +  + 
Sbjct: 836  SQPPVELVVLDWRMPDLDG------VETLRRLRALPGAQPPVVMTTAYGADGVQGA-LDG 888

Query: 658  STDGVSIP-----SVIMKPLRSSMLAASLQRAMGVGN---KGNIRNWELPSMSLR-HLLL 708
            + DG++ P     +V+ KP+  S +  S+  A+G         +R    P+ S     L+
Sbjct: 889  ALDGMAGPAGPVTAVLEKPVTPSAMFDSVMMALGGAGPRMADAVRRIHDPAQSTELSALV 948

Query: 709  GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768
            GR +L+V+DN VN +VA   L+  G   + V  G++A + L    +FD   MD+QMP +D
Sbjct: 949  GRTVLLVEDNLVNQQVACGLLELVGIEAMVVGSGEEALQCLREV-KFDLVLMDVQMPGLD 1007

Query: 769  GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
            G+E T++IR          R  E+S           +PI+AMTA  +    E CL +GM+
Sbjct: 1008 GYETTRLIR----------RDLELS----------SLPIVAMTAHAMAGDRERCLDAGMN 1047

Query: 829  GYVSKPFEAEQLYREVSRFFPPI 851
             +VSKP + E LY  ++R+  P+
Sbjct: 1048 DHVSKPIDPEALYAALARWLKPV 1070


>gi|113474748|ref|YP_720809.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum
            IMS101]
 gi|110165796|gb|ABG50336.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum
            IMS101]
          Length = 1384

 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 202/649 (31%), Positives = 312/649 (48%), Gaps = 99/649 (15%)

Query: 238  KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
            K   D   + + + +A AA  AKS+FLAT+SHEIRTP+N V+GM  +L+DT L   Q ++
Sbjct: 646  KTATDATDLAKARDEALAATRAKSEFLATMSHEIRTPINAVIGMTGLLLDTSLKSDQTEF 705

Query: 298  VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
            V T ++SG AL++LIN++LD +K+ES K +LE   F+L   L++ + L   K  ++G+EL
Sbjct: 706  VETIRSSGDALLTLINDILDFSKIESEKFDLEEHPFDLETCLEESIDLLVAKVSEQGLEL 765

Query: 358  AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV----YLVEEVVDSIEVE 413
              +I    P  +IGD  R RQI+ NL+ N++KFT  G + V+V      +EE V ++ VE
Sbjct: 766  VYFIDPETPTIVIGDVTRVRQILVNLLSNAVKFTSDGEVLVSVSGRKLEIEENVQNLAVE 825

Query: 414  TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 473
              +S S          D C  W  ++                    +  SV+DTG GIP 
Sbjct: 826  N-ISES----------DTCDIWPAYE--------------------IQFSVKDTGIGIPA 854

Query: 474  EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS-------------I 520
               +R+F  F QV  S +R +GGTG+GL ISK L   M G++   S             +
Sbjct: 855  NRMNRLFKRFSQVDSSTNREYGGTGLGLVISKRLAEMMGGQMWVESMGVVGGNPPATYRL 914

Query: 521  PNI-----------GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 569
            P++           GSTF FT V  +  S     N     N  N    +    + L+VD 
Sbjct: 915  PDLYEHSAAVNEKSGSTFYFTIV--SKCSIQTVQNKFIQTNYVNGSQHKLVDKRILIVDD 972

Query: 570  RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK----IINMILVEQEVWEKDTSVS 625
                  +     +  G+ V    +  + L  IA+ +K    II+M + E +       ++
Sbjct: 973  NSTNRTILLRQTESWGMIVRTAENANRALELIATENKFDVAIIDMKMPEIDGLSLGKKIT 1032

Query: 626  TLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL---- 681
               +         +Q+   +L +S+     N S   +   SVI KP++ S L  +L    
Sbjct: 1033 EYPI---------YQNLPIILLSSLGQQEINFSDKLLG--SVINKPIKQSQLYEALLNIF 1081

Query: 682  --QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCV 739
              Q         N RN++   +  + L L  +IL+ DD+ VN KVA   L+R G      
Sbjct: 1082 SGQDVKVKFKNNNKRNYQTIPVLAKELPL--RILLADDHLVNQKVALRILQRMGYRADLA 1139

Query: 740  ERGKK--ATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAY 797
              G +  A    +P   +D   MD+QMP MDG EA+   R ++  + N  +  + S +  
Sbjct: 1140 SNGLEVLAAVFRLP---YDVVLMDVQMPLMDGLEAS---RHIQREYENATKYSQKSPQKR 1193

Query: 798  ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
                     I+AMTA+V+Q   EEC+ +GMD Y+SKP + E+L + +S+
Sbjct: 1194 PR-------IIAMTANVMQGYREECIAAGMDDYISKPIQIEELIKALSK 1235


>gi|288942322|ref|YP_003444562.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288897694|gb|ADC63530.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1320

 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 198/632 (31%), Positives = 295/632 (46%), Gaps = 109/632 (17%)

Query: 252  KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
            +AEA+  AKSQFLA +SHEIRTPMNGV+G+  +L+DT+LD  Q+      + SG+ L++L
Sbjct: 656  QAEASTQAKSQFLANMSHEIRTPMNGVIGITGLLLDTDLDPEQRRLAEIVRDSGENLLAL 715

Query: 312  INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
            IN++LD +K+E+GKLELE + F+LR ++++VL + +  + +K +EL   I+ +VP  + G
Sbjct: 716  INDILDFSKIEAGKLELEHLEFDLRLLIEEVLEMMAFNAHEKDLELTYRIAPQVPTAVRG 775

Query: 372  DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
            DP   RQ+I NLMGN+IKFTE+G + + + L                           +R
Sbjct: 776  DPRYLRQVIVNLMGNAIKFTERGEVGLQLAL---------------------------ER 808

Query: 432  CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
              + +    F                      V D+G GIP +   ++FT F QV  S +
Sbjct: 809  AEAGRALIRFE---------------------VHDSGIGIPEDQLGKLFTAFNQVDSSTT 847

Query: 492  RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 551
            R  GGTG+GL I+K L   M G+IG  S P  GS F FTA F     T+ E+   + +  
Sbjct: 848  RRFGGTGLGLVIAKQLAQLMNGDIGLESRPGQGSRFWFTAEFECSPQTATEYRVCERDID 907

Query: 552  PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV---VSDQLQCLSQIASGSKII 608
               V      +     D R   A + R      G QV V     D L+ L Q        
Sbjct: 908  DVRVLVVDDHL-----DNRAQAASLLRA----WGCQVAVAGRAGDALRALHQAVRAGAPF 958

Query: 609  NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 668
            ++ L++  +       + L +  L K     +    +L  +++        +       +
Sbjct: 959  DVALIDLRM----PDPNGLQLARLIKQEPEIRDTRLVLLTALAKREDYAYLESGDFAGYV 1014

Query: 669  MKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR------KILIVDDNNVNL 722
             KPLR  ++   L R MG   +  +     P    R   +GR      ++L+VDDN  N 
Sbjct: 1015 TKPLRHHLVRDCLLRVMG-RERPVLEPVSPPVGPDRIPGIGRPAHPEARLLLVDDNPTNQ 1073

Query: 723  KVAAAGLKRYGAA---VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
             VA   L++ G     + C   G +A E L    ++D   MD QMPEMDGFE  ++    
Sbjct: 1074 IVARGILEKLGYPKPDIAC--NGLEALEALSRA-RYDLVLMDGQMPEMDGFETARL---- 1126

Query: 780  EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
                   IRRGE        V + HVPI+AMTA V+      CL +GM+ Y+SKP +  +
Sbjct: 1127 -------IRRGEA------GVLDPHVPIVAMTALVMPGDVRRCLDAGMNAYISKPVQPHE 1173

Query: 840  LYREVSRFF---------------PPIPDRSP 856
            L R ++                  P +PD  P
Sbjct: 1174 LSRIIAEHLFHMDSRRGPKDADLPPEVPDPRP 1205


>gi|428221149|ref|YP_007105319.1| PAS domain-containing protein [Synechococcus sp. PCC 7502]
 gi|427994489|gb|AFY73184.1| PAS domain S-box [Synechococcus sp. PCC 7502]
          Length = 1257

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 186/594 (31%), Positives = 295/594 (49%), Gaps = 98/594 (16%)

Query: 261  SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 320
            S+FLA +SHEIRTPMN V+GM  +L+DT+L+  Q+++V T +  G AL+++IN++LD +K
Sbjct: 628  SEFLAMMSHEIRTPMNAVIGMTGLLLDTQLNNEQRNFVETIRMGGDALLNVINDILDFSK 687

Query: 321  VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 380
            +E+ ++ELE   F+++A ++++L LF+ K  +K +ELA  I  ++P  + GD GR RQI+
Sbjct: 688  IEANRMELEIEPFSIQACVEEILDLFAPKITEKKIELAALIDPKLPSVINGDAGRLRQIL 747

Query: 381  TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 440
             NL+ N IKFTEKG + + V  +E                                    
Sbjct: 748  INLVSNGIKFTEKGEVTIVVTYIE------------------------------------ 771

Query: 441  FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 500
                       +S+ D + +   ++DTG GI  E   R+F PF Q   SI+R +GGTG+G
Sbjct: 772  -----------NSAVDCL-VQFKIKDTGIGIKDEQIGRLFQPFAQADSSITRRYGGTGLG 819

Query: 501  LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSV-SSEF 559
            L ISK L   M G +   S   +GSTF+FT     G            ++ P ++   + 
Sbjct: 820  LVISKRLCEMMGGTLTVNSQIGVGSTFSFTIPVACG------------HDLPETILEDDL 867

Query: 560  QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS--QIASGSKIINMILVEQEV 617
            +G + L+VD       +    +Q  G+ V+      + L   +I     +  + L   E+
Sbjct: 868  KGKRILIVDDNATNRHILTIQLQGWGMLVQSAGLGREALDILEIDPNFDLAILDLKMPEI 927

Query: 618  WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 677
               + +++      L++ G  F     +L  S+   R   +       + + KP++SS L
Sbjct: 928  NGAELAIA------LQEKGHTFP---IILLTSLDYHRKIEAA-----AATLSKPVKSSQL 973

Query: 678  AASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVV 737
              +L R   + +   +     P +S   L    +IL+V+DN +N KVA A L+R+G    
Sbjct: 974  LKTLLRIFSL-HGSEVTEISHPQVS--GLTKPLQILLVEDNAINQKVAVAMLERFGYNPA 1030

Query: 738  CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR--EMEHNFNNRIRRGEVSIE 795
                GK+A  ++    +FD  FMDI MPEMDG  AT+IIR  ++++  N R  R      
Sbjct: 1031 IAGNGKEAI-VMTEQQRFDLIFMDIHMPEMDGLTATRIIRSQDLQNIKNGRGNRPR---- 1085

Query: 796  AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
                       I+AMTA+V Q    EC  +GMD Y+SKP   E+L + + R  P
Sbjct: 1086 -----------IVAMTANVFQEAIAECFEAGMDDYISKPVLTEELAKVIERCQP 1128


>gi|209522722|ref|ZP_03271280.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496771|gb|EDZ97068.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1493

 Score =  260 bits (664), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 208/698 (29%), Positives = 322/698 (46%), Gaps = 135/698 (19%)

Query: 212  ISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEI 271
            +++ +GI +  +    + +  V     +E     + E K  AE A  AKS+FLAT+SHEI
Sbjct: 687  VASQVGITIAQA---KLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEI 743

Query: 272  RTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 331
            RTPMN V+GM  +L+D EL   Q+D+V T + SG AL+++IN++LD +K+ESGKLELE  
Sbjct: 744  RTPMNAVIGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQ 803

Query: 332  SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT 391
             F LR  L++ L L SG++ +KG+ELA  I    P+T++GD  R RQ++ NL+ N+IKFT
Sbjct: 804  PFKLRNCLEECLELLSGRADEKGLELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFT 863

Query: 392  EKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFK 451
             +G + + V                                      K  + D      K
Sbjct: 864  SEGEVILAV--------------------------------------KATHPDAKKDVKK 885

Query: 452  SSSADLIN----LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 507
            S  +D       L   V DTG GIP +   R+F  F QV  S +R +GGTG+GL+IS+ L
Sbjct: 886  SDDSDFTESHYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRL 945

Query: 508  VGRMKGEIGFVSIPNI-------------------------------GSTFTFTAVFGNG 536
               M G++   S  N+                               GS F FT V    
Sbjct: 946  SQLMNGKMWVASWVNLLDEYHDETSSLISSVAGNPPPDFVRPQVFRPGSIFYFTIVCSGF 1005

Query: 537  SSTSNEHNSQQMNNQPN--SVSSEF-QGMKALVVDPRPIRAKVSRYHIQRLG---IQVEV 590
                         N P+    S +F  G K L+V+   I  K+    ++  G   ++V+ 
Sbjct: 1006 -------------NTPDLGEFSDDFLHGKKVLIVEHHDINQKLLIRQVKSWGMVPVRVKT 1052

Query: 591  VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK--LGCGFQSKLF--LL 646
             +D L+ L      +  +++I++   + + D +     +  L K  +   ++ K F  ++
Sbjct: 1053 GADALKVLHD----NPGLDLIILGINLPDMDEATLASRIRQLEKQMIAGKYRQKPFNLVM 1108

Query: 647  ANSISSSRA--NTSTDGVSIPSVIMKPLRSSMLAASLQRAMG----VGNKGNIRNWEL-- 698
             N  S++         GV++  ++ KPL+ S    +L +       +    +I+N E   
Sbjct: 1109 FNYASNTEVLRRLEAQGVNVAGLVNKPLKQSQFYNTLMQIFADSQTIEKHYHIKNAESGY 1168

Query: 699  -PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 757
             P++   H  L  +IL+ +DN  N KVA   L+R G        G +  + L    Q+D 
Sbjct: 1169 DPAIPQPHANL--RILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALN-RQQYDV 1225

Query: 758  CFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNF---HVPILAMTADV 814
              MD+QMPEMDG EA+K I                   AY + S+       I+AMTA+ 
Sbjct: 1226 ILMDVQMPEMDGLEASKHI-----------------CAAYSDGSDMGPRKPRIIAMTANA 1268

Query: 815  IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
            +Q   E CL +GMD Y++KP   E L   +++  P  P
Sbjct: 1269 MQGDREMCLNAGMDDYITKPVRREALAEALAKCHPISP 1306


>gi|290511110|ref|ZP_06550479.1| two-component system, NarL family, sensor histidine kinase BarA
           [Klebsiella sp. 1_1_55]
 gi|289776103|gb|EFD84102.1| two-component system, NarL family, sensor histidine kinase BarA
           [Klebsiella sp. 1_1_55]
          Length = 916

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 191/609 (31%), Positives = 297/609 (48%), Gaps = 115/609 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QI+TNL+GN+IKFTE G+I V   LVE+                        
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDV---LVEQ------------------------ 435

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                ++ S   + + + + DTG GIP   QSR+F  F Q   S
Sbjct: 436 ---------------------RAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFRQADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++     +    G +   V+     A+ +   +    ++V + S     L++    
Sbjct: 522 --PNAIPDMLNTDGLTGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 663
               +++LV   V  +D S        L K  C     + L L      S      DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLVK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629

Query: 664 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
             + ++KPL ++ L  +L     A          + +LP            ++ VDDN  
Sbjct: 630 --ACLLKPLTTTRLLPALVATNHAPASAPLTQTDSHKLPM----------TVMAVDDNPA 677

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           NLK+  A L      V+  + G++A +      Q D   MDIQMP+MDG  A ++I  + 
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVDQ-AKRLQMDLILMDIQMPDMDGIRACELIHHLS 736

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
           H+                       P++A+TA  ++   E+ L +GM+ Y++KP E E+L
Sbjct: 737 HHQ--------------------QTPVIAVTAHALEGQREKLLSAGMNDYLAKPIEEEKL 776

Query: 841 YREVSRFFP 849
           +  + R+ P
Sbjct: 777 HALLLRYQP 785


>gi|428213858|ref|YP_007087002.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
 gi|428002239|gb|AFY83082.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
          Length = 1437

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 204/651 (31%), Positives = 315/651 (48%), Gaps = 89/651 (13%)

Query: 252  KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
            +A AA  AKS+FLAT+SHEIRTPMN V+GM  +L+DT+L+  Q+D+V T +ASG AL+++
Sbjct: 674  EALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTDLNPEQRDFVETVRASGDALLTI 733

Query: 312  INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
            IN++LD +K+ESGKL+LE   FNLR+ ++D L L + ++ +KGVELA  I    PE +IG
Sbjct: 734  INDILDFSKIESGKLDLEQQPFNLRSCIEDSLDLLASRAAEKGVELAYLIEPSTPEMIIG 793

Query: 372  DPGRFRQIITNLMGNSIKFTEKGHIFVTV---YLVEEVVDSIEVETELSSSKNTLSGYPV 428
            D  R RQI+ NL+ N++KFTEKG + V+V    +  +    I  ++ +   + T +G+  
Sbjct: 794  DVTRVRQILVNLLSNAVKFTEKGEVVVSVSASAIPPQQAGGIGTDSLILKDQETTNGH-- 851

Query: 429  ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 488
                H     K  N D       S+   L  +  +V DTG GIP E  +R+F  F QV  
Sbjct: 852  ---LH-----KDLNPD------SSAGNPLCQIQFTVSDTGIGIPPERMNRLFKSFSQVDS 897

Query: 489  SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG------------------------ 524
            S +R +GGTG+GL+ISK L   M G +  VS   +G                        
Sbjct: 898  STTREYGGTGLGLAISKRLSELMGGRMWVVSGEGVGGDPDPAFQWPIASSVQEQSSPMPD 957

Query: 525  ---STFTFTAVFGNGSSTSNEHN--------SQQMNNQP---NSVSSEFQGMKALVVDPR 570
               S FT T    + + T    +        +  +N  P   N       G + L+VD  
Sbjct: 958  PEQSIFTLTDAKSDQADTPPTGSTFYFTVMATPAVNPLPVDLNGTQPSLAGKRVLIVDDN 1017

Query: 571  PIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVN 630
                ++        G++ +  S   + L  + + S++ ++ +++ ++ + D      ++ 
Sbjct: 1018 ATNRQILTRQALFWGMKPKAASSAREALDWLQN-SEMFDIAILDMQMPQMDGITLASYIR 1076

Query: 631  NLRKLGCGFQSKLFLLANSISSSRANTS-TDGVSIPSVIMKPLRSSMLAASLQRAMGVGN 689
             + K      ++ F L    S  R      D V   + + KP++ S L   L    G G 
Sbjct: 1077 GIVK------NREFPLVMLTSIGRQEVDLPDKVPFAAFLNKPIKQSYLYNVLAGIFG-GV 1129

Query: 690  KGNIRNWELPSMSLRHLLLGRK---ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT 746
                R   L ++++   +  +K   IL+ +D+ VN KVA   L R G        G +  
Sbjct: 1130 PILSRPVHLNAVAIDPQMAQQKPLRILLAEDHLVNQKVALQILHRLGYRADVAGNGIEVL 1189

Query: 747  ELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVP 806
            + L   H +D   MD+ MPEMDG  AT+ I   +   + R+                H P
Sbjct: 1190 QALDRQH-YDVVLMDVHMPEMDGLAATRQI--CQDALDGRLS---------------HRP 1231

Query: 807  -ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIPDRSP 856
             I+AMTA+ +Q   E CL +GMD Y+SKP    +L   ++   P   D SP
Sbjct: 1232 RIIAMTANAMQGDRELCLDAGMDDYISKPIRMPELVEALA-LTPVDSDHSP 1281


>gi|398872748|ref|ZP_10628030.1| PAS domain S-box [Pseudomonas sp. GM74]
 gi|398201838|gb|EJM88704.1| PAS domain S-box [Pseudomonas sp. GM74]
          Length = 1469

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 183/612 (29%), Positives = 292/612 (47%), Gaps = 88/612 (14%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            ++ AE A  AKS FLAT+SHEIRTPMN ++GM  + + TELD  Q++Y+     S + L+
Sbjct: 725  REAAEEATRAKSNFLATMSHEIRTPMNAIIGMSYLALRTELDHRQRNYIEKVHRSAEYLL 784

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
             +IN++LD +++E+GK+ LE + F+L A+LD   S+   K++DKG+EL       +P  L
Sbjct: 785  VIINDILDFSRIEAGKMHLEHIPFHLEAVLDGFASMIGLKAEDKGLELLFSTDAELPTAL 844

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            IGDP R  Q++ NL  N+ KFTE+G I + V            E   ++ +         
Sbjct: 845  IGDPLRLGQVLINLGNNATKFTEQGEIVLGV------------EQRGAAGEQA------- 885

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
             + H W                            V DTG G+  E  SR+F PF Q   +
Sbjct: 886  -QLHFW----------------------------VRDTGIGMNAEQCSRLFEPFSQADST 916

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+IS++LV  M G I   S P +GSTF F    G            Q +
Sbjct: 917  TTRKYGGTGLGLAISRHLVELMGGRIWVESEPGLGSTFHFEVSLGV-----------QRD 965

Query: 550  NQPNSV--SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG-SK 606
            + P  +  + E  G + LVVD       +     +  G++V+V       L+ +    +K
Sbjct: 966  SHPRRMVTADELLGSRVLVVDDNASARAILSSMARSFGVEVDVAQSGRVALAMLVEAEAK 1025

Query: 607  II--NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
            ++  +++L++  +   D  V T+      KL     S + + A     +R   S  G+ +
Sbjct: 1026 VLPYDLVLMDWRMPGMD-GVETVRQMQAAKL-AQTPSVIMVTAFGREEAREEASRYGIQL 1083

Query: 665  PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL--PSMSLRHLLLGRKILIVDDNNVNL 722
            P V+ KP+  S L  +L   +G   + + R  E      S+   L G ++L+V+DN +N 
Sbjct: 1084 PVVLTKPVTPSTLLEALGTVLGKIPEAHTRTGERLGQRASVMASLRGARLLLVEDNELNR 1143

Query: 723  KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
            ++A   L+  G  +     G +A + L     FD   MD QMP MDG+ AT+ IRE    
Sbjct: 1144 ELACELLESAGIELCLAVHGAQALDQLARDADFDGVLMDCQMPVMDGYTATRKIREQPRW 1203

Query: 783  FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                                  +P++AMTAD +    E  L  GM+ +++KP   + ++ 
Sbjct: 1204 TT--------------------LPVIAMTADAMAGDRERALACGMNDHITKPLNVDDMFA 1243

Query: 843  EVSRFFPPIPDR 854
             ++++  P  DR
Sbjct: 1244 TLAKWIHPRTDR 1255


>gi|254415604|ref|ZP_05029363.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
 gi|196177554|gb|EDX72559.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
          Length = 1156

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 183/612 (29%), Positives = 289/612 (47%), Gaps = 94/612 (15%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           ++E +  A A    KS+FLA +SHEIRTP+NGVLGM+ +L+ T+L+  Q +Y RT ++  
Sbjct: 408 LVEARDAALATARLKSKFLANMSHEIRTPINGVLGMMRLLLQTDLNPQQLNYTRTIESCA 467

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
           K L+++IN++LD +K+E+GK+ LE + F+L + LD V+ + + +++ KG+ELA+ +   V
Sbjct: 468 KHLLTVINDILDVSKLEAGKMLLEQIDFSLDSCLDSVIDVLAVQAETKGLELAILVESNV 527

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
           P  L  DPGR RQI+ NL+GN+IKFT+ G + V V +                       
Sbjct: 528 PRQLQSDPGRLRQILLNLVGNAIKFTDAGEVVVRVAVSRH-------------------- 567

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                  P  + S   + L  SV DTG GI    QS++F  F Q
Sbjct: 568 ----------------------QPTDTLSQSSVTLRFSVTDTGIGISAADQSKLFQAFSQ 605

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
           V  S +R +GGTG+GL I + LV  + G+IG  S    GSTF FT               
Sbjct: 606 VEASTTRRYGGTGLGLVICQQLVELLGGKIGVESKVGQGSTFWFTV-------------- 651

Query: 546 QQMNNQP----NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
             +  QP     +V    + +K LV        +  R H++  G+Q++  +D    +  +
Sbjct: 652 -PVKTQPLPPAQAVPLALRQLKLLVTAKNATTRQTVRSHLEAWGMQIDEATDSTSTMDAL 710

Query: 602 ASGSKIIN----MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 657
            +     +     IL  Q    +  S+  +   N         S   ++  ++       
Sbjct: 711 RNAVSRCHPYDVAILDLQLPGSQGESIVPMIRCN-----PSLASTKLIVITTMHQLDTVQ 765

Query: 658 STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KILIV 715
             + + I   + KP+++S L  SL  A  V  + ++  W+       HL      KIL+V
Sbjct: 766 ELESMEILGYLTKPMKASQLWESLLAA--VTPEVDLETWQTTIHQPTHLNDSSHLKILLV 823

Query: 716 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI 775
           DD+ +N  V    L+  G    C   G +A   L     +D  FMD QMP +DG+EAT+ 
Sbjct: 824 DDHPINQTVIVNQLQMLGYQPECASNGSEALAKLQ-AQSYDIVFMDCQMPVLDGYEATRE 882

Query: 776 IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
           +R  E                    SN H  ++A+TA  +++  E+CL  GMD ++SKPF
Sbjct: 883 LRRQEG-------------------SNRHTIVIALTASALESDREKCLAVGMDDFLSKPF 923

Query: 836 EAEQLYREVSRF 847
           + + L   + R+
Sbjct: 924 DQDTLQAMIERW 935


>gi|239905593|ref|YP_002952332.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239795457|dbj|BAH74446.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1248

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 202/626 (32%), Positives = 296/626 (47%), Gaps = 96/626 (15%)

Query: 242  DYHGMMELKKK--------AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT 293
            DY   MEL  K        A+ A  AK  FLA +SHEIRTPMNGV+GM  +L+DT L   
Sbjct: 569  DYANRMELTNKQLNIALARADEAAKAKGDFLANMSHEIRTPMNGVIGMAGLLLDTSLTDE 628

Query: 294  QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDK 353
            QQ +  T ++SG+ L+ L+N++LD +K+E+GKLELE V F+L  ILDDV+   +  S  K
Sbjct: 629  QQRFAETIRSSGELLLLLVNDILDFSKIEAGKLELEIVDFDLVQILDDVMDSMAVGSHSK 688

Query: 354  GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 413
            G+EL       VP  L GDP R RQI++NL+GN+IKFT +G + V V +V E        
Sbjct: 689  GLELLCATDPSVPYQLQGDPARLRQILSNLVGNAIKFTVQGQVSVRVSIVNE-------- 740

Query: 414  TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 473
                                                     +D I L  SV DTG GI  
Sbjct: 741  ---------------------------------------KESDCI-LKFSVSDTGIGIQS 760

Query: 474  EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533
            + Q  IF  F QV  S +R  GGTG+GL+ISK LV  M G IG  S    G++F FTA  
Sbjct: 761  DKQVLIFEQFNQVDASTTRKFGGTGLGLAISKRLVEMMGGTIGVESNLGEGASFWFTACL 820

Query: 534  GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 593
                S + E +          +SS FQG + LVVD      +     +   G++ E+  D
Sbjct: 821  KKRDSITEESSV--------CLSSFFQG-RVLVVDDNVTSCENLFTQLNSWGLKTEIAMD 871

Query: 594  ---QLQCLSQIASGSKIINMILVEQEVWEKD-TSVSTLFVNNLRKLGCGFQSKLFLLANS 649
                LQ L ++ +      +++++  +   D  ++     ++ R     F S   +   S
Sbjct: 872  GPSALQALYKVINVEDFYKVVIIDVHLPGMDGVALGQTIRSDHR-----FDSVKIIFMTS 926

Query: 650  ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG 709
            +  +      D VS    + KP+    L + L R   V +  N +   L   +  H    
Sbjct: 927  LGGNCRQYCHD-VSNADCLSKPVHYRDLRSMLGRFFEVNSCQNRQTENLHGSNNEHAFQF 985

Query: 710  R---KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
                +IL+ +DN  N +VA   L ++G  V  V  G +A  + +    +D   MD+ MP 
Sbjct: 986  SSEWRILLAEDNITNQQVAKGILNKFGLNVDVVSNGLEAV-VALESEAYDLVLMDMHMPT 1044

Query: 767  MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG 826
            +DG  AT+ I                 ++    V N ++PI+AMTA+V++A  E+C  +G
Sbjct: 1045 LDGVAATRRI-----------------LDGSSKVINRNIPIIAMTANVLEADREKCFAAG 1087

Query: 827  MDGYVSKPFEAEQLYREVSRFFPPIP 852
            M  YVSKP   + L  +++++ P  P
Sbjct: 1088 MVDYVSKPVVPQVLADKIAKWLPKDP 1113


>gi|154252300|ref|YP_001413124.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
 gi|154156250|gb|ABS63467.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
          Length = 946

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 189/642 (29%), Positives = 302/642 (47%), Gaps = 114/642 (17%)

Query: 236 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 295
           IA++E     ++  K +AEA + AKS FLA +SHEIRTPMNGVLGM ++L+ T L+  Q+
Sbjct: 253 IAELEATKQELIAAKDQAEAGNRAKSDFLANMSHEIRTPMNGVLGMTELLLTTALNAEQR 312

Query: 296 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 355
            +  T + SG+AL++++N++LD +K+E+G+LEL+ + F+L   ++  +SL + ++ +K +
Sbjct: 313 KFAETVRESGEALLTIVNDILDVSKLEAGRLELDHIDFDLVNTVESAISLMAARAAEKQI 372

Query: 356 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF--VTVYLVEEVVDSIEVE 413
           +L  YI         GDP R RQ++ NL+GN+IKFTEKG +   V+VY VE+        
Sbjct: 373 DLGAYIEPAARGIYRGDPARLRQVLLNLIGNAIKFTEKGGVAVRVSVYRVED-------- 424

Query: 414 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 473
                                              P   +S    +L   V DTG GIP 
Sbjct: 425 -----------------------------------PQTKAS----HLRFEVHDTGIGIPE 445

Query: 474 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533
           +   R+F  F Q   S++R +GGTG+GL+I K +V  M G IG  S    GSTF F    
Sbjct: 446 DVCGRLFQKFSQADSSVTRRYGGTGLGLAICKQIVELMDGNIGVNSRVGAGSTFWFQL-- 503

Query: 534 GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 593
              S   +  +   ++  P       + +K LVVD  P+   V    +   GI V    D
Sbjct: 504 ---SLVRSAAHLPDLSRLP----VYLEKLKVLVVDDVPVNLDVLTSQLGTYGITVTRAED 556

Query: 594 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK--LGCGFQSKL-------- 643
                +++             +  W         F++ +     G    S++        
Sbjct: 557 GFAAQAEL-------------ERAWHAGHPYDIAFLDQMMPGISGEDLASRIRNNPDLAD 603

Query: 644 --FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG---VGNKGNIRNWEL 698
              +L +S  S  +    +  ++ + + KPLR   L   L R      + +  +  N ++
Sbjct: 604 MKLVLVSSAGSHASKLHEENDTLDARVEKPLRQHELLDCLMRVYSGAPLVDSSSAHNRDV 663

Query: 699 ----PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
                + S R L    +IL+ +DN +N KVA A L++ G +V   E G +A + +   H 
Sbjct: 664 LEDGAATSARTL----RILLAEDNKINQKVALAMLEQLGHSVTIAENGLQAVDAVRRGH- 718

Query: 755 FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
           FD   MDIQMPE+DG  AT+ IR +                         +PI+AMTA+ 
Sbjct: 719 FDVVLMDIQMPELDGVGATRGIRALP-------------------APKCDIPIIAMTANA 759

Query: 815 IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIPDRSP 856
           ++    + L  GMD Y+SKP   + L+ ++++    +P + P
Sbjct: 760 MEGAERKYLDCGMDDYISKPVRRDILFAKLAKVSAALPAQPP 801


>gi|428213913|ref|YP_007087057.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
 gi|428002294|gb|AFY83137.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
          Length = 1680

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 210/682 (30%), Positives = 322/682 (47%), Gaps = 125/682 (18%)

Query: 233  VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 292
            V  IA V ++ + ++E ++ A  A   KSQFLA +SHEIRTPMNGVLGM  +L+ T L  
Sbjct: 931  VGGIAIVTDNINELVEARETALEAARIKSQFLANMSHEIRTPMNGVLGMTGLLLQTSLSN 990

Query: 293  TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 352
             Q+D   T + SG+ L+ +IN++LD +K+E+G++ LE++ F L   +++V+ L +  +  
Sbjct: 991  QQRDCAETIRISGEHLLRVINDILDFSKLEAGEMNLESLDFQLSTCIEEVVDLLAAPAHQ 1050

Query: 353  KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV--YLVEEVVDSI 410
            KG+ELAV+I  +VP+ LIGDP R RQI+ NL+ N IKFT +G + V V   +  E +D+ 
Sbjct: 1051 KGLELAVWIDPKVPQHLIGDPARLRQILLNLINNGIKFTHRGEVVVQVNQSMKPESLDA- 1109

Query: 411  EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
                                     KG + +                  L  +V+DTG G
Sbjct: 1110 -------------------------KGQEVW------------------LRFTVQDTGIG 1126

Query: 471  IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
            IP E Q+++F  F QV  S +R +GGTG+GL+I K LV  M GEIG  S P+ GS F F 
Sbjct: 1127 IPKERQNKLFQSFSQVDTSTTRRYGGTGLGLAICKQLVELMGGEIGVESYPDRGSNFWFE 1186

Query: 531  AVFGNGSSTSNEHNSQQMNNQPN-SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI--- 586
              F        +  ++   + P  ++      +K LV  P     +  RY     GI   
Sbjct: 1187 LKF-------RKQGTRVSGSIPRCALPIALTEVKVLVAHPSAATRQSLRYLAADWGIGLD 1239

Query: 587  QVEVVSDQLQCLSQIASGSKIINMILVEQEVW---------------------------E 619
            +VE  S   Q L   A+  +   + +V+  +                            E
Sbjct: 1240 EVENYSSLCQTLQAAATAGQPYQVAIVDLHLLLGLEDDRQEHGDCQEDCKNCTDCTLSDE 1299

Query: 620  KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA-----NTSTDGVS-IPSVIMKPLR 673
             D S+   F+  L       ++ LFL+       RA      +   G+S +   ++KP+R
Sbjct: 1300 PDPSMVEEFIQKLSPF--TPETSLFLMTTLQYRDRALALVQCSQQRGLSFVEGHLVKPVR 1357

Query: 674  SSMLAASLQRAM-----GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
            SS L  SL   +       G++    + + P  S  H  +  KIL+ +D+ +N +V    
Sbjct: 1358 SSQLLNSLMTVVLRPQTRSGDRTVSDSPQNPVPSPIHSPV--KILVAEDHPINQQVILQQ 1415

Query: 729  LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
            L+  G    CV  G +A   L   H +D   MD QMP +DG++ T+ IR+ E        
Sbjct: 1416 LEALGYQGECVGNGVEAIARLGQKH-YDIVLMDCQMPGLDGYQTTQEIRKREAT------ 1468

Query: 789  RGEVSIEAYENVSNFHVP-----ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
             G +  ++ E+ S  H P     ++A+TA  + A  E+CL +GMD Y+SKP   + L   
Sbjct: 1469 -GSL-CQSTESDSPDHSPPHKTVVIALTAHAMSAEREKCLAAGMDDYLSKPVHLDHLSAL 1526

Query: 844  VSRFF------------PPIPD 853
            + R+             PP PD
Sbjct: 1527 LERWIARPHQPINNLNQPPEPD 1548


>gi|417824412|ref|ZP_12471003.1| sensory box protein [Vibrio cholerae HE48]
 gi|340048097|gb|EGR09020.1| sensory box protein [Vibrio cholerae HE48]
          Length = 1331

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 301/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
                K  +M+ V+   W          +  ++ LG     K FL    +++     + DG
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFL----VTAYGREINLDG 942

Query: 662  VS---IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
             +   + ++I+KP+  S L  ++  + G+ +  +  N      + R   +G+ +L+V+DN
Sbjct: 943  ENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFVGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIRA 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1060 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVRD 1113


>gi|376007484|ref|ZP_09784679.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
 gi|375324120|emb|CCE20432.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
          Length = 1493

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 208/698 (29%), Positives = 322/698 (46%), Gaps = 135/698 (19%)

Query: 212  ISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEI 271
            +++ +GI +  +    + +  V     +E     + E K  AE A  AKS+FLAT+SHEI
Sbjct: 687  VASQVGITIAQA---KLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEI 743

Query: 272  RTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 331
            RTPMN V+GM  +L+D EL   Q+D+V T + SG AL+++IN++LD +K+ESGKLELE  
Sbjct: 744  RTPMNAVIGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQ 803

Query: 332  SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT 391
             F LR  L++ L L SG++ +KG+ELA  I    P+T++GD  R RQ++ NL+ N+IKFT
Sbjct: 804  PFKLRNCLEECLELLSGRAAEKGLELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFT 863

Query: 392  EKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFK 451
             +G + + V                                      K  + D      K
Sbjct: 864  SEGEVILAV--------------------------------------KATHPDAKKDVKK 885

Query: 452  SSSADLIN----LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 507
            S  +D       L   V DTG GIP +   R+F  F QV  S +R +GGTG+GL+IS+ L
Sbjct: 886  SDDSDFTESHYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRL 945

Query: 508  VGRMKGEIGFVSIPNI-------------------------------GSTFTFTAVFGNG 536
               M G++   S  N+                               GS F FT V    
Sbjct: 946  SQLMNGKMWVASWVNLLDEYHDETSSLISSVAGNPPPDFVRPQVFRPGSIFYFTIVCSGF 1005

Query: 537  SSTSNEHNSQQMNNQPN--SVSSEF-QGMKALVVDPRPIRAKVSRYHIQRLG---IQVEV 590
                         N P+    S +F  G K L+V+   I  K+    ++  G   ++V+ 
Sbjct: 1006 -------------NTPDLGEFSDDFLHGKKVLIVEHHDINQKLLIRQVKSWGMVPVRVKT 1052

Query: 591  VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK--LGCGFQSKLF--LL 646
             +D L+ L      +  +++I++   + + D +     +  L K  +   ++ K F  ++
Sbjct: 1053 GADALKVLHD----NPGLDLIILGINLPDMDEATLASRIRQLEKQMIAGKYRQKPFNLVM 1108

Query: 647  ANSISSSRA--NTSTDGVSIPSVIMKPLRSSMLAASLQRAMG----VGNKGNIRNWEL-- 698
             N  S++         GV++  ++ KPL+ S    +L +       +    +I+N E   
Sbjct: 1109 FNYASNTEVLRRLEAQGVNVAGLVNKPLKQSQFYNTLMQIFADSQTIEKHYHIKNAESGY 1168

Query: 699  -PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 757
             P++   H  L  +IL+ +DN  N KVA   L+R G        G +  + L    Q+D 
Sbjct: 1169 DPAIPQPHANL--RILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALN-RQQYDV 1225

Query: 758  CFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNF---HVPILAMTADV 814
              MD+QMPEMDG EA+K I                   AY + S+       I+AMTA+ 
Sbjct: 1226 ILMDVQMPEMDGLEASKHI-----------------CAAYSDGSDMGPRKPRIIAMTANA 1268

Query: 815  IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
            +Q   E CL +GMD Y++KP   E L   +++  P  P
Sbjct: 1269 MQGDREMCLNAGMDDYITKPVRREALAEALAKCHPISP 1306


>gi|428215820|ref|YP_007088964.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
 gi|428004201|gb|AFY85044.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
          Length = 1860

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 190/599 (31%), Positives = 301/599 (50%), Gaps = 81/599 (13%)

Query: 260  KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
            KS+FLAT+SHEIRTPMN V+GM  +L+DT L+  Q+++V T + SG  L+++IN++LD +
Sbjct: 1155 KSEFLATMSHEIRTPMNAVIGMTGLLLDTPLNADQREFVETIRTSGDGLLTIINDILDFS 1214

Query: 320  KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
            K+ESGK++LE   FNLR  +++ L L + K+ +K +ELA  ++ + PE +IGD  R RQI
Sbjct: 1215 KIESGKMDLEEHPFNLRTCIEECLDLVASKAAEKQLELAYLLAPQTPEGIIGDVTRLRQI 1274

Query: 380  ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
            + NL+ N++KFT++G   V V                                       
Sbjct: 1275 LVNLLSNAVKFTQEGETIVAVN-------------------------------------G 1297

Query: 440  TFNQDGS-TSPFKSSS-ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 497
            TF QD    +P  +++   +  +  SV+DTG GIP +   R+F  F QV  S +R +GGT
Sbjct: 1298 TFVQDAQFGNPMATATEGGVYQIHFSVKDTGVGIPPDRMDRLFKSFSQVDSSTTRKYGGT 1357

Query: 498  GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS 557
            G+GL+I+K L   M G +   S   +GSTF FT      ++TS   ++   +  P     
Sbjct: 1358 GLGLAIAKRLSELMGGTMWVESQVGVGSTFHFTI---QATATSEFASATPEDEVP----- 1409

Query: 558  EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI-INMILVEQE 616
            +  G   L+VD       +     Q  G+     +   + L+Q+   +    ++ +++ +
Sbjct: 1410 QLTGKHLLIVDDNATNRLILTRQAQSWGMIPYAAASGPEGLAQLQETADTRFDLAILDMQ 1469

Query: 617  VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 676
            + E D          +R+L  G +  L +L  S+     +    G+   + + KP++ S 
Sbjct: 1470 MPEMD---GLALAAAIRQLPGGDRLPLIML-TSLGWQPVSREAAGIDFAAFLSKPIKQSQ 1525

Query: 677  LAASLQRAMGV----GNKGNIRNWELPSMSLRHLLLGR----KILIVDDNNVNLKVAAAG 728
            L   L   +G+     N+ + R   +PS   + + L      KIL+ +DN VN KVA   
Sbjct: 1526 LFDIL---IGIFSRRSNRKDSRVHRVPSFPKQSIPLKSDRPLKILLAEDNVVNQKVALRI 1582

Query: 729  LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATK-IIREMEHNFNNRI 787
            L+R G        G +A   L     +D   MD+QMPEMDG EAT+ I +E        +
Sbjct: 1583 LERMGYRADVASNGLEAIAALN-RQSYDVILMDVQMPEMDGLEATRHICKEWT------L 1635

Query: 788  RRGEVSIEAYENVSNFHVP-ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 845
            RR         ++S    P I+AMTA+ +Q   E CL++GMD Y+SKP   E L + ++
Sbjct: 1636 RR---------DISPMGRPWIIAMTANAMQGDREICLQAGMDNYISKPIRMEALAQALA 1685


>gi|288933810|ref|YP_003437869.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
 gi|288888539|gb|ADC56857.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
          Length = 916

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 191/606 (31%), Positives = 295/606 (48%), Gaps = 109/606 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QI+TNL+GN+IKFTE G+I V   LVE+                        
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDV---LVEQ------------------------ 435

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                ++ S   + + + + DTG GIP   QSR+F  F Q   S
Sbjct: 436 ---------------------RAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFRQADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++     +    G +   V+     A+ +   +    ++V + S     L++    
Sbjct: 522 --PNAIPDMLNTDGLTGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 663
               +++LV   V  +D S        L K  C     + L L      S      DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLVK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 723
             + ++KPL ++ L  +L          N      P        L   ++ VDDN  NLK
Sbjct: 630 --ACLLKPLTTTRLLPALMAT-------NHAPASAPLTQTDSHKLPMTVMAVDDNPANLK 680

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           +  A L      V+  + G++A +      Q D   MDIQMP+MDG  A ++I  + H+ 
Sbjct: 681 LIGALLDDLVQQVILCDSGQQAVDQ-AKRLQMDLILMDIQMPDMDGIRACELIHHLSHHQ 739

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
                                 P++A+TA  ++   E+ L +GM+ Y++KP E E+L+  
Sbjct: 740 --------------------QTPVIAVTAHALEGQREKLLSAGMNDYLAKPIEEEKLHAL 779

Query: 844 VSRFFP 849
           + R+ P
Sbjct: 780 LLRYQP 785


>gi|389776683|ref|ZP_10194114.1| multi-sensor hybrid histidine kinase [Rhodanobacter spathiphylli B39]
 gi|388436485|gb|EIL93349.1| multi-sensor hybrid histidine kinase [Rhodanobacter spathiphylli B39]
          Length = 1392

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 181/619 (29%), Positives = 302/619 (48%), Gaps = 99/619 (15%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            ++  +  AE A  AKS FLA +SHEIRTPMN ++GM  + + T LD  Q++Y+     + 
Sbjct: 636  VLRARDIAEEATRAKSDFLANMSHEIRTPMNAIIGMSYLALQTALDPRQRNYIEKVHRAA 695

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            + L+ +IN++LD +K+E+GK+ +E+V F L  ++D++ +L   K++ + +EL   I+  V
Sbjct: 696  ENLLGVINDILDFSKIEAGKMTMESVDFRLEDVMDNLANLVGLKAEQRNLELLFEIAPDV 755

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  L+GDP R  Q++ NL  N++KFTEKG + V+V  V                      
Sbjct: 756  PTALVGDPLRLGQVLVNLGNNAVKFTEKGAVVVSVERV---------------------- 793

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                      +   D + L   V D+G G+  E  S +F  F Q
Sbjct: 794  --------------------------AQRGDQVELHFQVRDSGIGMTSEQVSALFRSFSQ 827

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               S +R +GG+G+GL+IS+ LVG M GEI   S P  GSTF F A+ G           
Sbjct: 828  ADSSTTRKYGGSGLGLAISRRLVGMMGGEIWVDSEPGQGSTFHFHALLG----------V 877

Query: 546  QQMNN-QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS- 603
            Q M + +P   + +  G++ L+VD  P+  ++        G+ V+  S   Q L  IA  
Sbjct: 878  QAMPSLRPELYADDLNGLRLLIVDDNPVAREILATIAAEFGVDVDTASGGGQALVMIAEA 937

Query: 604  ----GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC--GFQSKLFLLANSISSSRANT 657
                G    +++L++   W+  T      +  L++      F + + + A+    +    
Sbjct: 938  AAAAGGHPYDVVLMD---WKMPTMDGVEAIRRLQEYTAMTSFPAVIMVTAHGRDEALDAA 994

Query: 658  STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI------RNWELPSMSLRHLLLGRK 711
            +  GV + +V+ KP+  S L  ++  A+G   KG +      R  E  S +LR L  G +
Sbjct: 995  AKSGVRVQAVLTKPVTFSSLFDAVVEALG---KGRVVDSRVHRKAERNSEALRQLR-GAR 1050

Query: 712  ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
            +L+V+DN+VN ++A   L + G  VV    G++A ++L    +FDA  MD QMP MDG+E
Sbjct: 1051 VLLVEDNDVNQELAREILAQAGMEVVVAGHGQEALDILGRDSRFDAVLMDCQMPVMDGYE 1110

Query: 772  ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
            A++ IR                       +   +PI+AMTA+ +    E+ + +GM  ++
Sbjct: 1111 ASRAIRAQP--------------------ALAGMPIIAMTANAMIGDREKVIDAGMIDHI 1150

Query: 832  SKPFEAEQLYREVSRFFPP 850
            +KP     ++  ++++  P
Sbjct: 1151 AKPLRVADMFATLAKWIRP 1169


>gi|374996937|ref|YP_004972436.1| signal transduction histidine kinase [Desulfosporosinus orientis DSM
            765]
 gi|357215303|gb|AET69921.1| signal transduction histidine kinase [Desulfosporosinus orientis DSM
            765]
          Length = 1261

 Score =  259 bits (663), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 175/624 (28%), Positives = 311/624 (49%), Gaps = 111/624 (17%)

Query: 238  KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
            + EE+    ME    AE A  AKSQFLA +SHEIRTPMN ++G+  +L  ++L  +QQ+Y
Sbjct: 524  RTEEELKRAME---AAEEASQAKSQFLANMSHEIRTPMNAIMGLAHLLAQSDLKESQQNY 580

Query: 298  VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
            V   + + K L+ +IN+VLD +K+E+GKLE+E + FNL  +L++V +L+S  + +KG++L
Sbjct: 581  VAKIEGASKTLLRIINDVLDFSKIEAGKLEIENIKFNLDKVLENVANLYSISAAEKGIDL 640

Query: 358  AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
                 + VP+ LIGDP R  Q+++NL+ N+IKFT +G + V+V ++ E  D +++     
Sbjct: 641  NFDTGEGVPDVLIGDPLRLEQVLSNLITNAIKFTNRGEVNVSVKVLGENNDEVKL----- 695

Query: 418  SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                    + V+D                                    TG GI  E   
Sbjct: 696  -------SFTVSD------------------------------------TGIGITKEHIG 712

Query: 478  RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
            R+F  F Q   S++R +GGTG+GL+ISK LV  M GEI   S+   G++F F   F    
Sbjct: 713  RLFRAFTQADGSMTRKYGGTGLGLTISKQLVELMNGEISVESVYGEGTSFHFIVHF---- 768

Query: 538  STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
                 H +  +     S   + QG KAL++D       +    ++   ++V  ++D  + 
Sbjct: 769  -----HKALDLKKPSCSNYPDLQGKKALIIDHNKTSLTILERMLRSFSLEVTALNDPFEA 823

Query: 598  LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL-GCGFQSKLF----------LL 646
            L ++    +  ++++++                NL +L G  F  ++           + 
Sbjct: 824  LERLH--RECFDLLVIDF---------------NLPELPGIEFYKRIIANPDIALPKTIF 866

Query: 647  ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG--VGNKGNIRNWELPSMSLR 704
             ++I           + + + ++KP+  S++  ++  A+     ++G + + E  S   R
Sbjct: 867  VSAIGRETHYHQVKQLGVRNFLVKPINQSLMFDAIMNALNGTALHQGEVIHDEANSRKHR 926

Query: 705  HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 764
              L  +++L+V+DN++N  VA   L++ G  V     G++A + +   ++F A  MD+QM
Sbjct: 927  GELADKRVLVVEDNDINQLVAKDMLEQAGMLVSIANNGEEAIKYV-HANKFAAVLMDVQM 985

Query: 765  PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 824
            P MDG++AT+I+R                    +  S+  +PI+AMTA+ ++   E  + 
Sbjct: 986  PVMDGYKATEILR--------------------KTYSSSELPIIAMTANALRGDRERSIA 1025

Query: 825  SGMDGYVSKPFEAEQLYREVSRFF 848
            +GM+ Y+SKP +  +L+  + ++ 
Sbjct: 1026 AGMNDYISKPIDPNRLFDTLEKWL 1049


>gi|403059834|ref|YP_006648051.1| sensor histidine kinase/response regulator [Pectobacterium
           carotovorum subsp. carotovorum PCC21]
 gi|402807160|gb|AFR04798.1| sensor histidine kinase/response regulator [Pectobacterium
           carotovorum subsp. carotovorum PCC21]
          Length = 931

 Score =  259 bits (663), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 199/613 (32%), Positives = 292/613 (47%), Gaps = 120/613 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T L+ TQ DY+ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLNTTQTDYLLTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F+L + LDDV+ L +  + +KG+EL + I + VPE  
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +QIITNL+GN+IKFTE+G+I             I VE     S          
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNI------------DIRVEKRRQESHQ-------- 442

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                       + L V + DTG GI    QS++F  F Q   S
Sbjct: 443 ----------------------------VQLEVQIRDTGIGIAELQQSQLFQAFRQADTS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S  N GSTF F              N   M 
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITL--------PLNPHAMP 526

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASGSKI 607
            +P    +  QG     V+  PI A+ +      L I  Q  ++        Q+  G   
Sbjct: 527 TEP--AYTMLQGKHLAYVEYHPIAAQAT------LDILSQTPLIVSYSPTFEQLPEGD-- 576

Query: 608 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA-NTSTDGVSIPS 666
            +++L+   V  ++T +   +   LR + C     + L   S++   A    T GV   +
Sbjct: 577 FDILLLGIPVQYRNTLLD--YTPRLRDI-CRRSPCVILALPSLAQMDAEQLKTFGVH--A 631

Query: 667 VIMKPLRSSMLAASLQRAM----------GVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
            + KPL +S L   LQ +              ++G +R+   P+       L   ++ VD
Sbjct: 632 CLSKPLAASRLLPLLQDSTLFQLSFLPDDAASHQGVVRH---PAR------LPLSVMAVD 682

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPEMDGFEAT 773
           DN  NLK+    L+     ++  E G+ A    EL    HQFD   MDIQMP MDG  A+
Sbjct: 683 DNPANLKLIGTLLEEQVETIILCESGQDAIAQAEL----HQFDVILMDIQMPGMDGICAS 738

Query: 774 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
           ++IR++ H+                       PI+A+TA  +    E  LRSGMD Y++K
Sbjct: 739 ELIRQIPHHATT--------------------PIIAVTAQTMTGEREHLLRSGMDDYLAK 778

Query: 834 PFEAEQLYREVSR 846
           P + + L   ++R
Sbjct: 779 PIDEQMLKSVLTR 791


>gi|206578572|ref|YP_002236863.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae 342]
 gi|206567630|gb|ACI09406.1| signal transduction histidine-protein kinase BarA [Klebsiella
           pneumoniae 342]
          Length = 916

 Score =  259 bits (663), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 191/609 (31%), Positives = 297/609 (48%), Gaps = 115/609 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QI+TNL+GN+IKFTE G+I V   LVE+                        
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDV---LVEQ------------------------ 435

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                ++ S   + + + + DTG GIP   QSR+F  F Q   S
Sbjct: 436 ---------------------RAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFRQADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++     +    G +   V+     A+ +   +    ++V + S     L++    
Sbjct: 522 --PNAIPDMLNTDGLTGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 663
               +++LV   V  +D S        L K  C     + L L      S      DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLVK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629

Query: 664 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
             + ++KPL ++ L  +L     A          + +LP            ++ VDDN  
Sbjct: 630 --ACLLKPLTTTRLLPALVATNHAPASAPLTQTDSHKLP----------MTVMAVDDNPA 677

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           NLK+  A L      V+  + G++A +      Q D   MDIQMP+MDG  A ++I  + 
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVDQ-AKRLQMDLILMDIQMPDMDGIRACELIHHLS 736

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
           H+                       P++A+TA  ++   E+ L +GM+ Y++KP E E+L
Sbjct: 737 HHQ--------------------QTPVIAVTAHALEGQREKLLSAGMNDYLAKPIEEEKL 776

Query: 841 YREVSRFFP 849
           +  + R+ P
Sbjct: 777 HALLLRYQP 785


>gi|312880876|ref|ZP_07740676.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
            12260]
 gi|310784167|gb|EFQ24565.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
            12260]
          Length = 1513

 Score =  259 bits (662), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 196/614 (31%), Positives = 294/614 (47%), Gaps = 87/614 (14%)

Query: 238  KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
            ++EE       +  +A+ A+ AKS FLA +SHEIRTPMNG+LGM  +L+DT+L   Q+ +
Sbjct: 840  RLEEQTALARSMALQADQANRAKSDFLANMSHEIRTPMNGILGMAALLLDTDLTPEQRHF 899

Query: 298  VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
                QAS + L+ L+N++LD +K+E+G+L LE V F+LR++ DDV +  + ++Q KG+E 
Sbjct: 900  GEIVQASAENLLGLLNDILDLSKIEAGRLALEEVDFDLRSLFDDVGAALAAQAQAKGLEF 959

Query: 358  AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
               +   VP  L GDPGR RQ++TNL+GN++KFT +G + V    V E  + ++V     
Sbjct: 960  LGSVEPDVPSALRGDPGRLRQVLTNLLGNAVKFTHRGEVVVRARRVSESPERVQVRF--- 1016

Query: 418  SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
            S ++T  G P                           AD ++L                 
Sbjct: 1017 SVRDTGIGIP---------------------------ADKVDL----------------- 1032

Query: 478  RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
             +F  F Q   S +R +GGTG+GL+ISK LV  M GEIG  S   +GS F FT  F    
Sbjct: 1033 -LFQKFTQADASTTRHYGGTGLGLAISKNLVELMGGEIGVHSREGVGSEFWFTLDFAKQP 1091

Query: 538  STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---Q 594
                              S + +G++ALVVD      ++    +   G+ VE V+D    
Sbjct: 1092 GGEGARGGD---------SRDLKGVRALVVDDNATNREILLARLTGWGMAVEAVADGPSA 1142

Query: 595  LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 654
            L+ L   ++      M +++ ++   D       +    KLG     KL ++ +      
Sbjct: 1143 LEVLRAASARGVPFEMAVLDMQMPGMDGETLGRILREDPKLGG---LKLVMMTSMGQRGD 1199

Query: 655  ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILI 714
            A+   + +   + + KPLR   L  SL  A+  G K  +    +    +R L    + L+
Sbjct: 1200 AHRMEE-IGFSAYLTKPLRHQDLRDSLT-AVLAGEKQPL----VTRHRIRELRRRGRALL 1253

Query: 715  VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATK 774
            V+DN VN +VA   L+R G      E G  A   L     +D   MD+QMP MDG E T+
Sbjct: 1254 VEDNEVNRQVALGMLRRLGLRADVAEDGLGALRAL-EEGDYDLVLMDVQMPGMDGVETTR 1312

Query: 775  IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
             IR       +R R             N  VPI+AMTA  +Q   E CL +GMDG++SKP
Sbjct: 1313 AIRAP----GSRAR-------------NPRVPIVAMTAHAMQGDRERCLEAGMDGFLSKP 1355

Query: 835  FEAEQLYREVSRFF 848
             +   L   +S + 
Sbjct: 1356 LDFSTLAESLSPWL 1369


>gi|443535096|ref|ZP_21100989.1| sensory box protein [Vibrio cholerae HC-80A1]
 gi|443461711|gb|ELT32769.1| sensory box protein [Vibrio cholerae HC-80A1]
          Length = 1314

 Score =  259 bits (662), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 195/615 (31%), Positives = 298/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 575  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 634

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 635  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 694

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 695  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 743

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 744  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 766

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 767  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 824

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 825  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 874

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
                K  +M+ V+   W          +  ++ LG     K FL    +++     + DG
Sbjct: 875  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFL----VTAYGREINLDG 925

Query: 662  VS---IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
             +   + ++I+KP+  S L  ++  + G+ +  +  N      + R    G+ +L+V+DN
Sbjct: 926  ENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 983

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 984  EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIR- 1041

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                                N     +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1042 -------------------ANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1082

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1083 KFY-QVLRHFLQVSD 1096


>gi|186682103|ref|YP_001865299.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186464555|gb|ACC80356.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1559

 Score =  259 bits (662), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 197/628 (31%), Positives = 294/628 (46%), Gaps = 119/628 (18%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            + +AE A   KS FLA +SHEIRTPMN VLGM  ++++T L+  QQD++ T + SG AL+
Sbjct: 886  RHQAELASKTKSAFLANMSHEIRTPMNAVLGMTGLMLETPLNSEQQDFIETIRISGDALL 945

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            SLINE+LD +K+E+G++ LE + F+L   L++VL L +  + +KG+E+A  I   VP  L
Sbjct: 946  SLINEILDLSKLEAGEMALETLDFDLSTCLEEVLELLAPSAHNKGLEIAALIYPNVPTQL 1005

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GD GR RQI+ NL+ N+IKFT  G + V   L                           
Sbjct: 1006 QGDAGRLRQILMNLISNAIKFTSNGEVVVRAEL--------------------------- 1038

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                 +S S+    +  ++ DTG GI  E Q R+FTPF QV  S
Sbjct: 1039 ---------------------RSLSSTTATIYFAITDTGLGITFEDQCRLFTPFTQVDAS 1077

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+I K LV  M GEIG  S    GS F F   F           +QQ+ 
Sbjct: 1078 NTRKYGGTGLGLAICKQLVSLMGGEIGVESRLGKGSKFWFEVTF-----------AQQLY 1126

Query: 550  NQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
              P S  SE + +   + LVVD      K+  +   R G+ V+  +     L  I   +K
Sbjct: 1127 --PISSESERELLINRRLLVVDDNATNRKIIHHQATRWGMLVDQAASATIALKAIEETAK 1184

Query: 607  IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL--------FLLANSISSSRANTS 658
              N+          D +V  + +  +  +  G Q K          ++  S +       
Sbjct: 1185 QKNLY---------DIAVIDMHMPEVDGMTLGEQIKANSAIAGLPLIMLTSTNQRDEIQR 1235

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMG--VGNKGNIRNWELP---------SMSLRHLL 707
               +   + ++KP++ S L  ++   +G  +  +  +R+ E             S    L
Sbjct: 1236 ALKIGFAAYLVKPVKPSRLLDTIMTILGTQIKEETEVRSQEFKLKDYENNSNDHSSSSRL 1295

Query: 708  LGR-----KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFM 760
            L R     +IL+ +DN VN KVA   L+  G +      GK+  +LL  +P   +D   M
Sbjct: 1296 LARDFHKLRILLAEDNLVNQKVALKQLQSLGYSADVAGNGKEVLQLLEKIP---YDLILM 1352

Query: 761  DIQMPEMDGFEATK-IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
            D QMP +DG E TK I R  E +F                VS+    ++AMTA+ ++   
Sbjct: 1353 DCQMPVLDGLETTKEIHRWQESSF----------------VSSRRPVVIAMTANAMKEDQ 1396

Query: 820  EECLRSGMDGYVSKPFEAEQLYREVSRF 847
            + CL +GMD Y+SKP   E+L   + R+
Sbjct: 1397 QMCLDAGMDDYLSKPVIKEKLAAALQRW 1424


>gi|254409964|ref|ZP_05023744.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
 gi|196183000|gb|EDX77984.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
          Length = 1946

 Score =  259 bits (662), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 199/640 (31%), Positives = 308/640 (48%), Gaps = 77/640 (12%)

Query: 209  LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 268
            L A++  +GI   A     + +   ++  ++ E    M + K+ AEAA+ AKS FLAT+S
Sbjct: 1208 LEAVADQVGI---ALAQAQLLEQEKHQRQQLAEQNVAMEKAKQIAEAANRAKSDFLATMS 1264

Query: 269  HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 328
            HEIRTPMN V+GM  +L+DT+L   Q ++  T + SG+AL+++IN++LD +K+ESGKLEL
Sbjct: 1265 HEIRTPMNAVIGMTGLLLDTQLSHEQAEFAETIRNSGEALLTIINDILDFSKIESGKLEL 1324

Query: 329  EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 388
            E   FNLR  +++ L L + K+ +K +ELA       P T+ GD  R RQI+ NL+ N++
Sbjct: 1325 EEQPFNLRTCIEESLDLLTPKAAEKAIELAYLFDPHTPNTIRGDITRLRQILVNLLSNAL 1384

Query: 389  KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 448
            KFT +G + V+V        S+E   +LS   N    Y +                    
Sbjct: 1385 KFTHQGEVTVSVSSKRVSPQSLE---QLSHRTNKEQQYEI-------------------- 1421

Query: 449  PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 508
                        + +V+DTG GIP +   R+F  F QV  S SR +GGTG+GL ISK L 
Sbjct: 1422 ------------LFAVKDTGIGIPPDRLDRLFKAFSQVDSSTSRHYGGTGLGLVISKRLS 1469

Query: 509  GRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN-NQPNSVSSEFQGMKALVV 567
              M G I   S    GS F FT V    +   +  N   ++  QP     + +G + L+V
Sbjct: 1470 EMMGGRIWVESEVGKGSIFYFTIV----APVCHIDNLSNLDLRQP-----QLEGKRMLIV 1520

Query: 568  DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL 627
            D      ++     Q  G+         Q L  +  G +  ++ +++  +   D      
Sbjct: 1521 DDNATNRRILTLQGQSWGVLTRAAESGEQALDWLQQG-ETFDLAILDMHMPGMD---GVN 1576

Query: 628  FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687
              + +R+   G +  L +L  SI     +   D     + + KP++ S L   L   + V
Sbjct: 1577 LASQIRRQPDGQEIPLVML-TSIGKPENSGQLDEAKFAAFLTKPIKQSQLYNVLMDVL-V 1634

Query: 688  GNKGNIRNWELPSMSLRHLL---LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 744
            G    +R+    S ++   +   +  +IL+ +DN VN +V    L R G        G +
Sbjct: 1635 GQPVKVRSTCEISPTIDPYMGANIPLRILLAEDNVVNQQVGLHILGRMGYRADVAANGLE 1694

Query: 745  ATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH 804
              E L     +D   MD+QMPEMDG +AT+ I + E +  NR                  
Sbjct: 1695 VLEALH-RQSYDVVLMDVQMPEMDGLKATQRICQ-EWSAENRPH---------------- 1736

Query: 805  VPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
              I+AMTA+ ++   E CL++GMD Y+SKP   E+L R +
Sbjct: 1737 --IIAMTANAMRGDRETCLQAGMDDYISKPIRVEELVRSL 1774


>gi|421320958|ref|ZP_15771515.1| sensory box protein [Vibrio cholerae CP1038(11)]
 gi|421335208|ref|ZP_15785675.1| sensory box protein [Vibrio cholerae CP1048(21)]
 gi|395923940|gb|EJH34751.1| sensory box protein [Vibrio cholerae CP1038(11)]
 gi|395937069|gb|EJH47792.1| sensory box protein [Vibrio cholerae CP1048(21)]
          Length = 1317

 Score =  259 bits (662), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 195/615 (31%), Positives = 298/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 578  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 637

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 638  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 697

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 698  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 746

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 747  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 769

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 770  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 827

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 828  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 877

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
                K  +M+ V+   W          +  ++ LG     K FL    +++     + DG
Sbjct: 878  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFL----VTAYGREINLDG 928

Query: 662  VS---IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
             +   + ++I+KP+  S L  ++  + G+ +  +  N      + R    G+ +L+V+DN
Sbjct: 929  ENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 986

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 987  EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIR- 1044

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                                N     +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1045 -------------------ANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1085

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1086 KFY-QVLRHFLQVSD 1099


>gi|424613163|ref|ZP_18051966.1| sensory box protein [Vibrio cholerae HC-41A1]
 gi|408014539|gb|EKG52173.1| sensory box protein [Vibrio cholerae HC-41A1]
          Length = 1325

 Score =  259 bits (661), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 195/615 (31%), Positives = 298/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 586  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 645

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 646  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 705

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 706  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 754

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 755  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 777

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 778  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 835

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 836  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 885

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
                K  +M+ V+   W          +  ++ LG     K FL    +++     + DG
Sbjct: 886  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFL----VTAYGREINLDG 936

Query: 662  VS---IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
             +   + ++I+KP+  S L  ++  + G+ +  +  N      + R    G+ +L+V+DN
Sbjct: 937  ENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 994

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 995  EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIR- 1052

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                                N     +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1053 -------------------ANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1093

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1094 KFY-QVLRHFLQVSD 1107


>gi|428227107|ref|YP_007111204.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
 gi|427987008|gb|AFY68152.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
          Length = 1170

 Score =  259 bits (661), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 190/639 (29%), Positives = 299/639 (46%), Gaps = 117/639 (18%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            +K+AE A   KS FLAT+SHEIRTPMN VLGM  +L+DT+L+  Q+DYV T Q SG AL+
Sbjct: 505  RKEAERASQLKSIFLATMSHEIRTPMNAVLGMTGLLLDTDLNPEQRDYVETIQVSGDALL 564

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +LINE+LD +K+E+G++ELE + FN +  L++V  L +  +  KG+E+AV+   ++P  L
Sbjct: 565  TLINEILDFSKLEAGEMELEILEFNPKDALEEVADLLAPSAHAKGLEMAVWSDPQLPPCL 624

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GD  R RQ++ NL+GN+IKFT +G + +   L+        +E  +S +          
Sbjct: 625  LGDVSRLRQVLINLVGNAIKFTAQGEVVIRAALLRASASEARLEFSVSDT---------- 674

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                                  G GI  EAQ RIF PF QV  S
Sbjct: 675  --------------------------------------GIGIQPEAQKRIFQPFSQVDAS 696

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            ++R +GGTG+GL+I + L   M G IG  S    GS F     F  G +       + ++
Sbjct: 697  MTRLYGGTGLGLAICRQLTELMGGAIGVESEWERGSRFWVRLGFQVGVAKPGPRKPEALD 756

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG----- 604
              P S+     G + LVVD      ++ R      G+QVE  +   +  + +        
Sbjct: 757  --PGSLV----GARLLVVDDNGTNRRILREQAIAWGMQVEEAAGAAEAWAMMQGAIAENQ 810

Query: 605  ---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
               + I++M++ E         ++   +    K      S   ++  S++ S    +   
Sbjct: 811  PYDAAILDMLMPE---------MNGEMLGRQIKADPVLASTPLIMMTSVNQSGQRQTLLD 861

Query: 662  VSIPSVIMKPLRSSMLAASLQRAMGV-------GNKGN------------IRNWE---LP 699
            +   + ++KP++ + L  SL +A+         G  G+            + +W    LP
Sbjct: 862  LGFAAYLIKPVKQARLLQSLVQAIAPKPPAESRGAWGDPATGDRPAVGCYLESWSSSPLP 921

Query: 700  SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDA 757
            S          KIL+V+D+ VN KVA   L+R G A      G++A ++L  +P   +D 
Sbjct: 922  SQWAMQTTTKPKILVVEDSAVNQKVALKQLERLGYAADVAANGQEALQMLETIP---YDI 978

Query: 758  CFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQA 817
              MD QMP +DG+ AT+++R  E                       H  ++AMTA+ +  
Sbjct: 979  VLMDCQMPVLDGYSATRMLRSREDG-------------------QRHTIVIAMTANAMTE 1019

Query: 818  TYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIPDRSP 856
              + CL +GMD Y+ KP   + L R + R+  P   + P
Sbjct: 1020 DRDLCLEAGMDDYLCKPIRIDDLGRMIDRWVLPCQMQPP 1058


>gi|359459603|ref|ZP_09248166.1| two-component hybrid sensor and regulator [Acaryochloris sp. CCMEE
           5410]
          Length = 1038

 Score =  259 bits (661), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 193/636 (30%), Positives = 315/636 (49%), Gaps = 90/636 (14%)

Query: 225 VGHIFQATVNRIAKVEEDYHGMM-EL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
           +G +  + ++ +   +++  GM+ EL   K +AEAA+ AKSQFLA +SHEIRTPMN V+G
Sbjct: 251 IGQLKDSMISLLKTRQQELEGMVSELQSAKHEAEAANQAKSQFLANMSHEIRTPMNAVIG 310

Query: 281 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
           M  +L++T L+  QQD+V T ++SG AL++LIN++LD +K+E+GKL+LE   F +R  ++
Sbjct: 311 MTGLLLNTPLEAQQQDFVETIRSSGDALLTLINDILDFSKIEAGKLDLEQQPFEIRTCIE 370

Query: 341 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
           + L + + K+ +K +ELA  I+   P  ++GD  R RQ++ NL+ N++KFT +G   V V
Sbjct: 371 EALLIVASKASEKNLELAYLINPPTPTAILGDITRLRQVLVNLLNNALKFTGEGE--VVV 428

Query: 401 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 460
           Y+  + ++S +++ E                                +P++        +
Sbjct: 429 YVSSKPIESKDLDAE-----------------------SDLEVIAEATPYE--------I 457

Query: 461 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520
              V+DTG GIP +   R+F  F QV  S +R  GGTG+GL+ISK L   M G+I   S 
Sbjct: 458 QFDVKDTGIGIPPDKLERLFKSFSQVDASTTRKFGGTGLGLAISKQLSELMGGKIWVSSE 517

Query: 521 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS------EFQGMKALVVDPRPIRA 574
            ++GSTF+FT        T++E         PN VS       +  G + L+VD      
Sbjct: 518 VSVGSTFSFTI-------TASEI--------PNYVSPKAASDVQLAGKQLLIVDDNATNR 562

Query: 575 KVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK 634
           ++     Q  G+    V   ++ L  +  G    ++ +++ ++ E D          +R 
Sbjct: 563 EILSLQAQSWGMLTCAVKSGIKALEWLQRGVN-FDLAVLDMQMPEMD---GVTLAEKIRA 618

Query: 635 LGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 694
              G    L +L+ S+           ++  +++ KP++ + L + L + +G      I+
Sbjct: 619 EPNGKTLPLVVLS-SLGQDDIRARAGDINFSAILNKPVQQAQLQSVLAQVLG---NPLIK 674

Query: 695 NWELPSMSLRHLLLGR----KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 750
             + P +      LG     +IL+ +D  VN KVA   LK+ G        G +  E L 
Sbjct: 675 VEQAPDVQENPTNLGDQHPLRILLAEDMVVNQKVALLTLKQLGYRADVANNGLEVIEAL- 733

Query: 751 PPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM 810
               +D   MD+QMPEMDG  AT   RE+   ++   R                  I+AM
Sbjct: 734 ERQAYDVVLMDVQMPEMDGLTAT---REVCQRWSPEDRPH----------------IIAM 774

Query: 811 TADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
           TA+ +Q   E CL +GMD Y++KP    +L   +SR
Sbjct: 775 TANAMQGDREMCLDAGMDAYITKPVRIHELRDVLSR 810


>gi|254506216|ref|ZP_05118360.1| PAS fold family protein [Vibrio parahaemolyticus 16]
 gi|219551034|gb|EED28015.1| PAS fold family protein [Vibrio parahaemolyticus 16]
          Length = 1319

 Score =  259 bits (661), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 188/616 (30%), Positives = 304/616 (49%), Gaps = 97/616 (15%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + E K+ A+A   AK  FLA +SHEIRTPMN +LGM  + ++TELD +Q+ Y+     S 
Sbjct: 594  LREAKELADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTELDPSQKKYLTRINESA 653

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            K L+ +IN++LD +K+E+GKL +E++ F+L  + D+++++ S K+ +KGVE  + I  +V
Sbjct: 654  KNLLGIINDILDFSKIEAGKLTVESIDFSLDEVFDNLVNVVSYKAHEKGVEFLLDIDPKV 713

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  L+GDP R  Q++ NL  NS+KFTEKG I V+  LVE++                   
Sbjct: 714  PIGLVGDPLRLGQVLVNLCSNSVKFTEKGEIVVSA-LVEQL------------------- 753

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                            +++ +T  F            SV+DTG GI  E    +F  F Q
Sbjct: 754  ----------------DENRATIRF------------SVKDTGIGIAKEKIQHLFRAFSQ 785

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               SI+R  GGTG+GLSISK LV  M GE+   S    GS F+FT   G   +       
Sbjct: 786  ADSSITRQFGGTGLGLSISKQLVELMGGELVVSSSEGTGSVFSFTIDCGLQEA------- 838

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
             +M +    VS+   G +AL+VD       + R  +  +    + VS+  + L ++    
Sbjct: 839  -KMRDLSEPVSA-LAGKRALIVDDNDSARSILRTLLTAMHFDAKAVSNAYEALDELK--E 894

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLF-----LLANSISSSRANTSTD 660
            +  +M+ V+   W      +   +N L  L      +L       L  +     + T   
Sbjct: 895  RAYDMLFVD---W------TMPGMNGLELLQKAHDERLLPHCKVFLVTAYGRELSLTEQS 945

Query: 661  GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
               I ++I+KP+  S L  ++  + G+    ++ +   PS ++R     + +L+V+DN V
Sbjct: 946  SKLIDALIVKPVNPSNLLDAVMDSFGI---EHVTSKVTPSDNVRPRFEKQTVLLVEDNEV 1002

Query: 721  NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
            N +VA   L      V+    G++A ++L   H+     MD+QMP MDG  A + IR+ +
Sbjct: 1003 NQEVALGLLSDTNLDVLVANHGQEAIKML-GHHKVSLVLMDMQMPVMDGITACQEIRKKD 1061

Query: 781  HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                          E  E      +PI+AMTA+ +Q+  E C+ +GM+G+++KP     L
Sbjct: 1062 --------------EWQE------LPIVAMTANAMQSDVERCINAGMNGHIAKPINVANL 1101

Query: 841  YREVSRFFPPIPDRSP 856
            Y+ + ++ P   D+ P
Sbjct: 1102 YQTLQQYLPLEGDQPP 1117


>gi|428305786|ref|YP_007142611.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
           9333]
 gi|428247321|gb|AFZ13101.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
           9333]
          Length = 1034

 Score =  259 bits (661), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 186/637 (29%), Positives = 309/637 (48%), Gaps = 97/637 (15%)

Query: 226 GHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 285
             + Q  + R  ++ E    + E ++ AE+A   KS FLA +SHEIRTPMN V+GM  +L
Sbjct: 342 AQLLQVEIRRAEELAERNLVLEEARQAAESAVKMKSAFLANMSHEIRTPMNAVIGMTGLL 401

Query: 286 MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 345
           ++TE+   Q+D++ T + S   L+++INE+LD +K+E+G++ LE ++F L   +++V  L
Sbjct: 402 LETEVTSEQKDFLETIRISADNLLTIINEILDFSKIEAGEMHLETINFGLHQCVEEVAEL 461

Query: 346 FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 405
            +  +Q+KG+E+  ++   +P T  GDP R RQI+TNL+ N+IKFTE G   VT+Y+   
Sbjct: 462 LATSAQEKGIEITTFVPANIPVTFKGDPTRLRQILTNLVSNAIKFTEVGG--VTIYV--- 516

Query: 406 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 465
              +++ ET + ++ +                                          V+
Sbjct: 517 ---NLQSETSVDATMH----------------------------------------FGVK 533

Query: 466 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 525
           DTG G+    Q ++F  F Q   S +R +GGTG+GL+I K LV  M GEIG  S    G+
Sbjct: 534 DTGIGLSPAQQKKLFQSFSQADASTTRKYGGTGLGLAICKALVELMGGEIGITSAQGEGA 593

Query: 526 TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVV-DPRPIRAKVSRYHIQRL 584
           TF FT        T N+  + Q  N  N      + ++ LVV D    R+ ++ +H    
Sbjct: 594 TFWFTI-------TLNKQPTTQPQNLENPALDRLKKVRLLVVEDFLDTRSAIA-HHTTAW 645

Query: 585 GIQVEVVSD---QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641
           G+QV++  +    +Q L Q    +      L++  + + D    +  +    KL    ++
Sbjct: 646 GMQVDLAENGATAIQDLQQAVDSNNPYQFALIDLNLPDMDGETLSKTIKADPKLA---KT 702

Query: 642 KLFLL--ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP 699
           +L L+   N +  ++   +   V+I   ++KP+++S +  SL  A  + N+      +  
Sbjct: 703 QLILMIPVNQLEQAKKLLN---VTIVDYLIKPVKTSKMLNSLVAATTISNQAEQSVNQHI 759

Query: 700 SMSLRHLLLGR---------KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 750
           + S     + +         KI++ +DN VN KVA   LK  G A      G++  E L 
Sbjct: 760 TTSKSFTTIDKKTQNRRSQVKIILAEDNKVNQKVALNQLKNLGYAADVANNGQEVLEQL- 818

Query: 751 PPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM 810
               +D   MD QMP +DG+EAT  IR  E                     N H  I+A+
Sbjct: 819 DKQNYDLVLMDCQMPILDGYEATAEIRRQEG-------------------KNKHTIIIAL 859

Query: 811 TADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
           TA  ++   ++C+ SGMD ++SKP   E L  ++  +
Sbjct: 860 TASAMKEDLDKCIASGMDDFLSKPVRKEALLEKLEHW 896


>gi|260221574|emb|CBA30274.1| hypothetical protein Csp_C22730 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 785

 Score =  259 bits (661), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 189/618 (30%), Positives = 294/618 (47%), Gaps = 85/618 (13%)

Query: 237 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 296
           A +E+      + +  AE A +AKSQFLA +SHE+RTPMN +LGML +L  TEL   Q+ 
Sbjct: 240 AALEQAKLAAEKARHTAEQASLAKSQFLANMSHELRTPMNAILGMLQLLEGTELTDKQRS 299

Query: 297 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 356
           Y     ++ ++L+SL+N++LD +KVE+GK+ L+   F    +L D+  + S     K +E
Sbjct: 300 YTHNTASAARSLLSLLNDILDFSKVEAGKMTLDPRPFRTDQLLRDLSVILSANVGAKTIE 359

Query: 357 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 416
           +   +   VP  L+GD  R +Q++ NL GN++KFTE+G + + +                
Sbjct: 360 VLFDVGTDVPNALVGDDMRLQQVLINLGGNAVKFTERGEVVIRL---------------- 403

Query: 417 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476
                         R  +  G K F +                   +V DTG GI  E Q
Sbjct: 404 --------------RLKATNGAKAFVE------------------FAVSDTGIGIASENQ 431

Query: 477 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536
           + IF+ F Q   S +R  GGTG+GL+I + LVG M G +   S+P  GS F FT      
Sbjct: 432 AHIFSGFSQAEASTTRRFGGTGLGLAICQRLVGLMGGTLEVDSVPGEGSNFHFTVPLQIA 491

Query: 537 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
            S +    +  +   P          KALVVD  P+   +     + LG  V+V     Q
Sbjct: 492 PSAA-VGPAAMVQRHP------LAAQKALVVDDNPVARALLATMTRSLGWDVDVAEGGPQ 544

Query: 597 CLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL-ANSISS 652
            L ++    SG K   +I ++  + + D   +T     +R    G  + + ++ AN  + 
Sbjct: 545 ALERVQAAQSGGKPYQVIFMDWRMPDWDGWETT---RRIRAAMPGGDTLILMVSANGRAM 601

Query: 653 SRANTSTDGVSIPSVIMKPLRSSMLA-ASLQRAMGVGNKGNIRNWELP-SMSLRHLLLGR 710
               T+ +   +   ++KP+ +SML  A +             N   P +++    L G 
Sbjct: 602 MAERTADEQALLNGFLVKPVTASMLLDAVMDAQAASAKAATGVNPAAPQAVNKPKRLDGM 661

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP-PHQFDACFMDIQMPEMDG 769
           ++L+V+DN +N  VA   LK+ GA V   + G+ A ELL   P  F+A  MD+QMP MDG
Sbjct: 662 RLLVVEDNKINQLVAKGLLKQEGAEVTLADNGQLAVELLTAQPDAFEAVLMDVQMPVMDG 721

Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
           +EAT+ +R M    N                    +P++AMTA+ + +  E CL +GM+ 
Sbjct: 722 YEATRALRTMPVFAN--------------------LPVIAMTANAMASDREACLAAGMND 761

Query: 830 YVSKPFEAEQLYREVSRF 847
           +V KPFE + L R +  F
Sbjct: 762 HVGKPFEIDHLVRTLLHF 779


>gi|15641361|ref|NP_230993.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae O1 biovar El Tor str. N16961]
 gi|153822062|ref|ZP_01974729.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae B33]
 gi|229511262|ref|ZP_04400741.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
 gi|229518380|ref|ZP_04407824.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
 gi|229608072|ref|YP_002878720.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
 gi|254848471|ref|ZP_05237821.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae MO10]
 gi|255745740|ref|ZP_05419688.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
 gi|262158982|ref|ZP_06030094.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
 gi|360035246|ref|YP_004937009.1| hypothetical protein Vch1786_I0851 [Vibrio cholerae O1 str.
            2010EL-1786]
 gi|379741153|ref|YP_005333122.1| hypothetical protein O3Y_06280 [Vibrio cholerae IEC224]
 gi|417813368|ref|ZP_12460025.1| sensory box protein [Vibrio cholerae HC-49A2]
 gi|417816232|ref|ZP_12462864.1| sensory box protein [Vibrio cholerae HCUF01]
 gi|418332380|ref|ZP_12943314.1| sensory box protein [Vibrio cholerae HC-06A1]
 gi|418337124|ref|ZP_12946022.1| sensory box protein [Vibrio cholerae HC-23A1]
 gi|418343639|ref|ZP_12950423.1| sensory box protein [Vibrio cholerae HC-28A1]
 gi|418348791|ref|ZP_12953525.1| sensory box protein [Vibrio cholerae HC-43A1]
 gi|418354901|ref|ZP_12957622.1| sensory box protein [Vibrio cholerae HC-61A1]
 gi|419825836|ref|ZP_14349340.1| sensory box protein [Vibrio cholerae CP1033(6)]
 gi|421316322|ref|ZP_15766893.1| sensory box protein [Vibrio cholerae CP1032(5)]
 gi|421324953|ref|ZP_15775479.1| sensory box protein [Vibrio cholerae CP1041(14)]
 gi|421328612|ref|ZP_15779126.1| sensory box protein [Vibrio cholerae CP1042(15)]
 gi|421331637|ref|ZP_15782117.1| sensory box protein [Vibrio cholerae CP1046(19)]
 gi|421339102|ref|ZP_15789537.1| sensory box protein [Vibrio cholerae HC-20A2]
 gi|421347236|ref|ZP_15797618.1| sensory box protein [Vibrio cholerae HC-46A1]
 gi|422891457|ref|ZP_16933835.1| sensory box protein [Vibrio cholerae HC-40A1]
 gi|422902668|ref|ZP_16937665.1| sensory box protein [Vibrio cholerae HC-48A1]
 gi|422906547|ref|ZP_16941377.1| sensory box protein [Vibrio cholerae HC-70A1]
 gi|422913130|ref|ZP_16947649.1| sensory box protein [Vibrio cholerae HFU-02]
 gi|422925611|ref|ZP_16958636.1| sensory box protein [Vibrio cholerae HC-38A1]
 gi|423144933|ref|ZP_17132542.1| sensory box protein [Vibrio cholerae HC-19A1]
 gi|423149612|ref|ZP_17136940.1| sensory box protein [Vibrio cholerae HC-21A1]
 gi|423153426|ref|ZP_17140620.1| sensory box protein [Vibrio cholerae HC-22A1]
 gi|423156239|ref|ZP_17143343.1| sensory box protein [Vibrio cholerae HC-32A1]
 gi|423160064|ref|ZP_17147032.1| sensory box protein [Vibrio cholerae HC-33A2]
 gi|423164787|ref|ZP_17151542.1| sensory box protein [Vibrio cholerae HC-48B2]
 gi|423730917|ref|ZP_17704231.1| sensory box protein [Vibrio cholerae HC-17A1]
 gi|423754962|ref|ZP_17712238.1| sensory box protein [Vibrio cholerae HC-50A2]
 gi|423892605|ref|ZP_17726288.1| sensory box protein [Vibrio cholerae HC-62A1]
 gi|423927383|ref|ZP_17730905.1| sensory box protein [Vibrio cholerae HC-77A1]
 gi|424001928|ref|ZP_17745014.1| sensory box protein [Vibrio cholerae HC-17A2]
 gi|424006089|ref|ZP_17749069.1| sensory box protein [Vibrio cholerae HC-37A1]
 gi|424024107|ref|ZP_17763767.1| sensory box protein [Vibrio cholerae HC-62B1]
 gi|424026957|ref|ZP_17766570.1| sensory box protein [Vibrio cholerae HC-69A1]
 gi|424586230|ref|ZP_18025819.1| sensory box protein [Vibrio cholerae CP1030(3)]
 gi|424594931|ref|ZP_18034264.1| sensory box protein [Vibrio cholerae CP1040(13)]
 gi|424598796|ref|ZP_18037989.1| sensory box protein [Vibrio Cholerae CP1044(17)]
 gi|424601535|ref|ZP_18040687.1| sensory box protein [Vibrio cholerae CP1047(20)]
 gi|424606527|ref|ZP_18045487.1| sensory box protein [Vibrio cholerae CP1050(23)]
 gi|424610357|ref|ZP_18049211.1| sensory box protein [Vibrio cholerae HC-39A1]
 gi|424616978|ref|ZP_18055665.1| sensory box protein [Vibrio cholerae HC-42A1]
 gi|424621929|ref|ZP_18060452.1| sensory box protein [Vibrio cholerae HC-47A1]
 gi|424644902|ref|ZP_18082650.1| sensory box protein [Vibrio cholerae HC-56A2]
 gi|424652582|ref|ZP_18090058.1| sensory box protein [Vibrio cholerae HC-57A2]
 gi|424656486|ref|ZP_18093784.1| sensory box protein [Vibrio cholerae HC-81A2]
 gi|440709608|ref|ZP_20890265.1| hypothetical protein VC4260B_10100 [Vibrio cholerae 4260B]
 gi|443503439|ref|ZP_21070418.1| sensory box protein [Vibrio cholerae HC-64A1]
 gi|443507340|ref|ZP_21074124.1| sensory box protein [Vibrio cholerae HC-65A1]
 gi|443511467|ref|ZP_21078122.1| sensory box protein [Vibrio cholerae HC-67A1]
 gi|443515022|ref|ZP_21081549.1| sensory box protein [Vibrio cholerae HC-68A1]
 gi|443518820|ref|ZP_21085230.1| sensory box protein [Vibrio cholerae HC-71A1]
 gi|443523710|ref|ZP_21089937.1| sensory box protein [Vibrio cholerae HC-72A2]
 gi|443531320|ref|ZP_21097335.1| sensory box protein [Vibrio cholerae HC-7A1]
 gi|443538664|ref|ZP_21104519.1| sensory box protein [Vibrio cholerae HC-81A1]
 gi|449056162|ref|ZP_21734830.1| Sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae O1 str. Inaba G4222]
 gi|9655841|gb|AAF94507.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae O1 biovar El Tor str. N16961]
 gi|126520395|gb|EAZ77618.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae B33]
 gi|229345095|gb|EEO10069.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
 gi|229351227|gb|EEO16168.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
 gi|229370727|gb|ACQ61150.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
 gi|254844176|gb|EET22590.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae MO10]
 gi|255736815|gb|EET92212.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
 gi|262029167|gb|EEY47819.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
 gi|340041958|gb|EGR02924.1| sensory box protein [Vibrio cholerae HCUF01]
 gi|340042672|gb|EGR03637.1| sensory box protein [Vibrio cholerae HC-49A2]
 gi|341623382|gb|EGS48917.1| sensory box protein [Vibrio cholerae HC-48A1]
 gi|341623445|gb|EGS48978.1| sensory box protein [Vibrio cholerae HC-70A1]
 gi|341624505|gb|EGS49997.1| sensory box protein [Vibrio cholerae HC-40A1]
 gi|341639567|gb|EGS64184.1| sensory box protein [Vibrio cholerae HFU-02]
 gi|341647193|gb|EGS71279.1| sensory box protein [Vibrio cholerae HC-38A1]
 gi|356419191|gb|EHH72749.1| sensory box protein [Vibrio cholerae HC-06A1]
 gi|356419628|gb|EHH73173.1| sensory box protein [Vibrio cholerae HC-21A1]
 gi|356424676|gb|EHH78075.1| sensory box protein [Vibrio cholerae HC-19A1]
 gi|356431642|gb|EHH84846.1| sensory box protein [Vibrio cholerae HC-22A1]
 gi|356432702|gb|EHH85899.1| sensory box protein [Vibrio cholerae HC-23A1]
 gi|356436053|gb|EHH89180.1| sensory box protein [Vibrio cholerae HC-28A1]
 gi|356441913|gb|EHH94789.1| sensory box protein [Vibrio cholerae HC-32A1]
 gi|356447530|gb|EHI00321.1| sensory box protein [Vibrio cholerae HC-43A1]
 gi|356448520|gb|EHI01284.1| sensory box protein [Vibrio cholerae HC-33A2]
 gi|356453303|gb|EHI05966.1| sensory box protein [Vibrio cholerae HC-61A1]
 gi|356454312|gb|EHI06960.1| sensory box protein [Vibrio cholerae HC-48B2]
 gi|356646400|gb|AET26455.1| conserved hypothetical protein [Vibrio cholerae O1 str. 2010EL-1786]
 gi|378794663|gb|AFC58134.1| hypothetical protein O3Y_06280 [Vibrio cholerae IEC224]
 gi|395920623|gb|EJH31445.1| sensory box protein [Vibrio cholerae CP1041(14)]
 gi|395921279|gb|EJH32099.1| sensory box protein [Vibrio cholerae CP1032(5)]
 gi|395930118|gb|EJH40867.1| sensory box protein [Vibrio cholerae CP1042(15)]
 gi|395932901|gb|EJH43644.1| sensory box protein [Vibrio cholerae CP1046(19)]
 gi|395944050|gb|EJH54724.1| sensory box protein [Vibrio cholerae HC-20A2]
 gi|395946296|gb|EJH56960.1| sensory box protein [Vibrio cholerae HC-46A1]
 gi|395960274|gb|EJH70649.1| sensory box protein [Vibrio cholerae HC-56A2]
 gi|395961513|gb|EJH71836.1| sensory box protein [Vibrio cholerae HC-57A2]
 gi|395964689|gb|EJH74888.1| sensory box protein [Vibrio cholerae HC-42A1]
 gi|395972195|gb|EJH81802.1| sensory box protein [Vibrio cholerae HC-47A1]
 gi|395975624|gb|EJH85108.1| sensory box protein [Vibrio cholerae CP1030(3)]
 gi|395977311|gb|EJH86722.1| sensory box protein [Vibrio cholerae CP1047(20)]
 gi|408008224|gb|EKG46228.1| sensory box protein [Vibrio cholerae HC-39A1]
 gi|408034321|gb|EKG70825.1| sensory box protein [Vibrio cholerae CP1040(13)]
 gi|408043399|gb|EKG79395.1| sensory box protein [Vibrio Cholerae CP1044(17)]
 gi|408044730|gb|EKG80622.1| sensory box protein [Vibrio cholerae CP1050(23)]
 gi|408055467|gb|EKG90395.1| sensory box protein [Vibrio cholerae HC-81A2]
 gi|408609917|gb|EKK83293.1| sensory box protein [Vibrio cholerae CP1033(6)]
 gi|408625305|gb|EKK98218.1| sensory box protein [Vibrio cholerae HC-17A1]
 gi|408638279|gb|EKL10200.1| sensory box protein [Vibrio cholerae HC-50A2]
 gi|408656242|gb|EKL27339.1| sensory box protein [Vibrio cholerae HC-77A1]
 gi|408657517|gb|EKL28596.1| sensory box protein [Vibrio cholerae HC-62A1]
 gi|408846838|gb|EKL86917.1| sensory box protein [Vibrio cholerae HC-37A1]
 gi|408848255|gb|EKL88306.1| sensory box protein [Vibrio cholerae HC-17A2]
 gi|408871573|gb|EKM10810.1| sensory box protein [Vibrio cholerae HC-62B1]
 gi|408879848|gb|EKM18791.1| sensory box protein [Vibrio cholerae HC-69A1]
 gi|439975197|gb|ELP51333.1| hypothetical protein VC4260B_10100 [Vibrio cholerae 4260B]
 gi|443432171|gb|ELS74702.1| sensory box protein [Vibrio cholerae HC-64A1]
 gi|443436373|gb|ELS82496.1| sensory box protein [Vibrio cholerae HC-65A1]
 gi|443439642|gb|ELS89340.1| sensory box protein [Vibrio cholerae HC-67A1]
 gi|443443664|gb|ELS96950.1| sensory box protein [Vibrio cholerae HC-68A1]
 gi|443447869|gb|ELT04511.1| sensory box protein [Vibrio cholerae HC-71A1]
 gi|443450261|gb|ELT10538.1| sensory box protein [Vibrio cholerae HC-72A2]
 gi|443458403|gb|ELT25799.1| sensory box protein [Vibrio cholerae HC-7A1]
 gi|443466253|gb|ELT40912.1| sensory box protein [Vibrio cholerae HC-81A1]
 gi|448263985|gb|EMB01224.1| Sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae O1 str. Inaba G4222]
          Length = 1331

 Score =  259 bits (661), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 195/615 (31%), Positives = 298/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
                K  +M+ V+   W          +  ++ LG     K FL    +++     + DG
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFL----VTAYGREINLDG 942

Query: 662  VS---IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
             +   + ++I+KP+  S L  ++  + G+ +  +  N      + R    G+ +L+V+DN
Sbjct: 943  ENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIR- 1058

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                                N     +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1059 -------------------ANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVSD 1113


>gi|144898313|emb|CAM75177.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 935

 Score =  259 bits (661), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 186/656 (28%), Positives = 307/656 (46%), Gaps = 121/656 (18%)

Query: 210 LAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSH 269
           LA+ T + +L  A +V     A    +  + ED   + + K  A+AA+ AKS+FLAT+SH
Sbjct: 255 LAVVTVLSVLTFAVMVAKQILAGSALLQAMVED---LRQAKTGADAANQAKSEFLATMSH 311

Query: 270 EIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 329
           EIRTPMNG++GM  +L+DT L+  Q  +  T + S ++L+++IN++LD +K+E+GKLE E
Sbjct: 312 EIRTPMNGIIGMTSLLLDTRLERDQAHFANTVRVSAESLLTIINDILDFSKMEAGKLEFE 371

Query: 330 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK 389
             SF L  +++ V+ +   + +DK ++L+ +I         GD GR RQ++ NL GN++K
Sbjct: 372 ETSFELVPLIEGVVDILGPRLRDKNLDLSCFIPPAAHGVFRGDAGRLRQVLLNLAGNAVK 431

Query: 390 FTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 449
           FT +G + + V +                           D     +    F        
Sbjct: 432 FTNQGGVVLEVMV---------------------------DDSDPARALLRF-------- 456

Query: 450 FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVG 509
                        ++ DTG GIP  A+ ++F  F Q   S +R  GG+G+GL+I K +V 
Sbjct: 457 -------------TITDTGIGIPEAAKGKLFGTFTQAEASTARRFGGSGLGLAICKRIVT 503

Query: 510 RMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 569
            M G+IGF S    GSTF F               + ++   P + S     +  LVVD 
Sbjct: 504 MMGGDIGFDSSEGKGSTFWFQVPL---------PRTDEIPADP-APSMPLAEVHILVVDD 553

Query: 570 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVE----------QEVWE 619
             I  ++ +  +Q  G QV    + ++ L  + +G++   M+L              +  
Sbjct: 554 NSINREIFQRQLQAWGAQVSTAFNGMEALEALRAGTRFHVMVLDHLMPGLSGIDLAAILR 613

Query: 620 KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAA 679
            DT+++ L +               L+A S+           V I SV++KP+R S L  
Sbjct: 614 GDTALAHLPI---------------LMATSVGGPEVMQQAQAVGIGSVLLKPVRQSALLH 658

Query: 680 SLQRAMGVG--------NKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKR 731
           +L   +G G          G + +   P+M LR       IL+ +DN +N +VA   L +
Sbjct: 659 ALLALLGKGEDTSPHVLGTGLVDDEAPPAMPLR-------ILVAEDNAINQQVAVGLLNK 711

Query: 732 YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 791
            G      + G +A EL+     +D   MD+QMP +DG  AT++IR++    N       
Sbjct: 712 LGHRADVADDGAEAVELVR-AGDYDLVLMDMQMPRVDGLAATRLIRQLAEPKN------- 763

Query: 792 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                        + I+AMTA+ ++A  + CL +GMD +++KP +  +L   + R+
Sbjct: 764 ------------RIAIIAMTANAMEADRQACLAAGMDDFLAKPIDRRRLSAILHRW 807


>gi|392424058|ref|YP_006465052.1| histidine kinase,Response regulator receiver domain
           protein,histidine kinase,Hpt domain-containing protein
           [Desulfosporosinus acidiphilus SJ4]
 gi|391354021|gb|AFM39720.1| histidine kinase,Response regulator receiver domain
           protein,histidine kinase,Hpt domain-containing protein
           [Desulfosporosinus acidiphilus SJ4]
          Length = 772

 Score =  259 bits (661), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 184/603 (30%), Positives = 294/603 (48%), Gaps = 102/603 (16%)

Query: 257 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVL 316
           +++KS FLA +SHEIRTPMNG++G L++L  +     Q++Y+R A+++   L+ +IN++L
Sbjct: 148 NISKSLFLANMSHEIRTPMNGIMGFLELLNMSNPSTEQKEYIREAKSASAVLLYVINDIL 207

Query: 317 DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 376
           D +K+E+GKL +E   F  R  ++D +SL   K+ +K +EL   I+  VPE +IGD  R 
Sbjct: 208 DFSKIEAGKLTMEESCFKTRTAIEDAVSLHVHKAFEKNLELHSMINANVPEEVIGDAQRL 267

Query: 377 RQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 436
           RQ++ NL+GN++KFTEKG I VT       VD IE E E++  K                
Sbjct: 268 RQVLNNLIGNAVKFTEKGEISVT-------VDCIEEEDEIALLK---------------- 304

Query: 437 GFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 496
                                      ++DTG GI  E   ++F  F QV  S +R +GG
Sbjct: 305 -------------------------FEIKDTGIGISQEDFQKLFQSFNQVDSSTTRKYGG 339

Query: 497 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS 556
           TG+GL+ISK LV  M+G I F SI   GS F F   F       +           N V 
Sbjct: 340 TGLGLAISKELVSLMRGNIEFKSILGEGSNFKFDVRFKIAKRVPDH----------NYVF 389

Query: 557 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI---INMILV 613
            E  G+  L++D  P   +++  ++  +G +V    D  + ++ I S       I++ L+
Sbjct: 390 KELAGVNILIIDDNPSNRRIAISYLGGMGCKVFEAKDPGEAITTIISKVSTRDKIDIALI 449

Query: 614 EQEV-----WEKDTSVSTL-FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
           +  +     +E  TS+  + F +++         KL LL ++  S  A  +   +     
Sbjct: 450 DYRMPGMSGFELATSLKAIPFASDI---------KLILLTSAAQSGGAKEAKQ-LGFAGY 499

Query: 668 IMKPLRSSMLAASLQRAMGVGNKGN---IRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
           ++KP++   L   +   +G+ ++ N   I    +    L H     KIL+V+DN +N K+
Sbjct: 500 LIKPIKRDDLLNCIAIVLGLKSEENNEPIVTKYVVQEGLDH--RKPKILLVEDNEINRKI 557

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A LK        V  G  A + +     +D   MD QMP MDG++ T  IREME    
Sbjct: 558 VTAVLKTRDITCDVVINGLDAYQAV-KKKDYDIVLMDCQMPVMDGYKCTAKIREMEG--- 613

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                           S+ H  I+AMTA+V++   E+C+++GMD Y+ KP   + L++ +
Sbjct: 614 ----------------SSKHTTIIAMTANVMEGDKEKCIQAGMDDYIGKPINFDNLFQII 657

Query: 845 SRF 847
             +
Sbjct: 658 ESY 660


>gi|24372448|ref|NP_716490.1| two component signal transduction system hybrid histidine
            kinase/response regulator with PAS sensory domain
            [Shewanella oneidensis MR-1]
 gi|24346431|gb|AAN53935.1| two component signal transduction system hybrid histidine
            kinase/response regulator with PAS sensory domain
            [Shewanella oneidensis MR-1]
          Length = 1765

 Score =  259 bits (661), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 186/611 (30%), Positives = 298/611 (48%), Gaps = 102/611 (16%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K +A+AA  AK  FLA +SHEIRTPMN ++GM  + + T+LD  Q++Y+   + + ++L+
Sbjct: 1030 KDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQLDKKQKNYLEKIERASQSLL 1089

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            S+IN++LD +K+E+GKL++E VSF L  +L+D+  +FS ++  K +EL   ++  VP  L
Sbjct: 1090 SIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQIELLFAVAPNVPRHL 1149

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GDP R  Q++ NLM N+IKFTE+G + +++ LVE+  D + +   +  S   L+     
Sbjct: 1150 LGDPLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQNDDVVLRFSVRDSGIGLT----- 1204

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                         Q+  +  FKS                              F Q   S
Sbjct: 1205 -------------QEQQSKLFKS------------------------------FTQADTS 1221

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+ISK LV  M G IG  S    GSTF FT      S            
Sbjct: 1222 TTRKYGGTGLGLAISKQLVELMGGSIGVESQLGHGSTFFFTVKLCISS------------ 1269

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV--SDQ--LQCLSQIASGS 605
             Q   V  E  GM  LV D       + R  ++ +G  V+ V   D+  ++C SQ     
Sbjct: 1270 GQKLFVGQELDGMSILVADDNATARDIMRTTLESMGFNVDTVRSGDEAIMRC-SQQEYAV 1328

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
             +I+  +   +  E    +     N  R           L+ ++ ++    T  + + + 
Sbjct: 1329 ALIDWKMPNLDGIETAKQIKQQTKNAPR----------ILMVSAHANQDFLTQIEQLGLA 1378

Query: 666  SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE---LPSMSLRHLLLGRKILIVDDNNVNL 722
              I KP+ +S L   +  A+G      +R  +    P + L   L G++IL+V+DN +NL
Sbjct: 1379 GYISKPISASRLLDGIMNALGRSGILPVRRHQDNIAPELLLP--LKGKRILLVEDNEMNL 1436

Query: 723  KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
            +VA   L++ G  +     G+ A + L     FD   MD QMP MDG++ATK IR+    
Sbjct: 1437 EVATEFLEQVGIILSIATNGQIALDKL-AQQSFDLVLMDCQMPVMDGYQATKAIRQ---- 1491

Query: 783  FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                  R E++           +P++AMTA+ +    E CLR+GM+ +++KP E   LY+
Sbjct: 1492 ------RPELA----------QLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQ 1535

Query: 843  EVSRFF-PPIP 852
             + ++   P+P
Sbjct: 1536 TLLKYLGAPVP 1546


>gi|158339053|ref|YP_001520230.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158309294|gb|ABW30911.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 1038

 Score =  259 bits (661), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 194/636 (30%), Positives = 316/636 (49%), Gaps = 90/636 (14%)

Query: 225 VGHIFQATVNRIAKVEEDYHGMM-EL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
           +G +  + ++ +   +++  GM+ EL   K +AEAA+ AKSQFLA +SHEIRTPMN V+G
Sbjct: 251 IGQLKDSMISLLKTRQQELEGMVSELQAAKHEAEAANQAKSQFLANMSHEIRTPMNAVIG 310

Query: 281 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
           M  +L++T L+  QQD+V T ++SG AL++LIN++LD +K+E+GKL+LE   F +R  ++
Sbjct: 311 MTGLLLNTPLEAQQQDFVETIRSSGDALLTLINDILDFSKIEAGKLDLEQQPFEIRTCIE 370

Query: 341 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
           + L + + K+ +K +ELA  I+   P  ++GD  R RQ++ NL+ N++KFT +G   V V
Sbjct: 371 EALLIVASKASEKNLELAYLINPPTPTAILGDITRLRQVLVNLLNNALKFTGEGE--VVV 428

Query: 401 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 460
           Y+  + ++S +++ E                                +P++        +
Sbjct: 429 YVSSKPIESKDLDAE-----------------------SDLEVIAEATPYE--------I 457

Query: 461 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520
              V+DTG GIP +   R+F  F QV  S +R  GGTG+GL+ISK L   M G+I   S 
Sbjct: 458 QFDVKDTGIGIPPDKLERLFKSFSQVDASTTRKFGGTGLGLAISKQLSELMGGKIWVSSE 517

Query: 521 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS------EFQGMKALVVDPRPIRA 574
            ++GSTF+FT        T++E         PN VS       +  G + L+VD      
Sbjct: 518 VSVGSTFSFTI-------TASEI--------PNYVSPKAASDVQLAGKQLLIVDDNATNR 562

Query: 575 KVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK 634
           ++     Q  G+    V   ++ L  +  G    ++ +++ ++ E D          +R 
Sbjct: 563 EILSLQAQSWGMLTCAVKSGIKALEWLQRGVN-FDLAVLDMQMPEMD---GVTLAEKIRA 618

Query: 635 LGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 694
              G    L +L+ S+           ++  +++ KP++ + L + L + +G      I+
Sbjct: 619 EPNGKTLPLVVLS-SLGQDDIRARAGDINFSAILNKPVQQAQLQSVLAQVLG---NPLIK 674

Query: 695 NWELPSMSLRHLLLGR----KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 750
             + P +      LG     +IL+ +D  VN KVA   LK+ G        G +  E L 
Sbjct: 675 VEQAPDVQENPTNLGDQHPLRILLAEDMVVNQKVALLTLKQLGYRADVANNGLEVIEAL- 733

Query: 751 PPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM 810
               +D   MD+QMPEMDG  AT   RE+   ++   R               H  I+AM
Sbjct: 734 ERQAYDVVLMDVQMPEMDGLTAT---REVCQRWSPEDRP--------------H--IIAM 774

Query: 811 TADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
           TA+ +Q   E CL +GMD Y++KP    +L   +SR
Sbjct: 775 TANAMQGDREMCLDAGMDAYITKPVRIHELRDVLSR 810


>gi|77359688|ref|YP_339263.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874599|emb|CAI85820.1| sensor protein barA [Pseudoalteromonas haloplanktis TAC125]
          Length = 918

 Score =  258 bits (660), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 180/609 (29%), Positives = 287/609 (47%), Gaps = 102/609 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A+  KS FLA +SHE+RTP+NGV+G    L  T L+  Q+DY+ T + S  +L+
Sbjct: 280 KKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLHKTPLNKNQKDYLDTIELSANSLM 339

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++I+++LD +K+E+G +ELE++ F LR  +++V++L +  + DK +EL++YIS +VP+ L
Sbjct: 340 TIISDILDFSKLEAGAMELESIQFQLRDTVNEVMTLLAPSAHDKQLELSIYISPQVPDHL 399

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R +Q++ NL+ N+IKFTEKG I             +++   L   + T       
Sbjct: 400 TGDPTRLKQVLINLLSNAIKFTEKGAI------------KVDISHRLLDDERT------- 440

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                        +++VSV DTG GIP++ Q  +FT F Q   S
Sbjct: 441 -----------------------------SILVSVADTGVGIPVDKQDALFTAFGQADSS 471

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           I+R  GGTG+GL I+K++V  M G+I   S P  G+ FTF  VF                
Sbjct: 472 ITRKFGGTGLGLIITKHIVEAMSGKITLNSAPGNGTCFTFNGVF---------------- 515

Query: 550 NQPNSV------SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 603
             PN V      +    G   L ++P           +    I V       + L+ I +
Sbjct: 516 RLPNHVFASDLPTKSLLGKHVLYLEPHEHTHHAVLSLLNEWQISVTGCFSDAEFLAAIDN 575

Query: 604 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
             +  ++ ++       D       V  +R+        L+L+ N++S S       G  
Sbjct: 576 KEQQYDICIIGDMASVNDMQRLKAHVKAVRE----STDYLYLMLNTVSHSMREAFI-GSG 630

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 723
             + + KPL    L   L     + +   + N E    +    LL  K+L+VDDN+ NLK
Sbjct: 631 ADACLSKPLNHRKLCELLAAPYRLDHP--VHNIEQNEQT----LLPLKVLVVDDNDANLK 684

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           +    L      +     G +A   L   H++D  FMDIQMP MDG  A K+I+E   N 
Sbjct: 685 LIYTLLNEQVELIDTAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDGITACKLIKESSLNE 743

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
           +                     PI+A+TA  + +  E+ L+ G +GY++KP + + L + 
Sbjct: 744 D--------------------TPIIAVTAHALHSEKEQLLKDGFEGYLTKPIDEDMLNQI 783

Query: 844 VSRFFPPIP 852
           +    P +P
Sbjct: 784 ICDHSPQLP 792


>gi|121728768|ref|ZP_01681782.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
 gi|121628945|gb|EAX61398.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
          Length = 1113

 Score =  258 bits (660), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 299/615 (48%), Gaps = 102/615 (16%)

Query: 248 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
           EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 374 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 433

Query: 305 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
            K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 434 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 493

Query: 365 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
           +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 494 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 542

Query: 425 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                 +V+DTG GI  +    +F  F 
Sbjct: 543 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 565

Query: 485 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
           Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 566 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 623

Query: 545 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                     +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 624 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 673

Query: 602 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
               K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 674 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 728

Query: 659 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                + ++I+KP+  S L  ++  + G+ +  +  N      + R   +G+ +L+V+DN
Sbjct: 729 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFVGQSLLLVEDN 782

Query: 719 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
            VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 783 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIRA 841

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 842 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 881

Query: 839 QLYREVSRFFPPIPD 853
           + Y +V R F  + D
Sbjct: 882 KFY-QVLRHFLQVSD 895


>gi|390958996|ref|YP_006422753.1| PAS domain-containing protein [Terriglobus roseus DSM 18391]
 gi|390413914|gb|AFL89418.1| PAS domain S-box [Terriglobus roseus DSM 18391]
          Length = 1042

 Score =  258 bits (660), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 186/626 (29%), Positives = 311/626 (49%), Gaps = 98/626 (15%)

Query: 228 IFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 287
           +F A V+ + + +     M E +  AEAA+ AKS+FLA +SHEIRTP+NGV+GM D+ ++
Sbjct: 363 MFAAFVHDVTQRKLAERSMEEARITAEAANRAKSEFLANMSHEIRTPLNGVIGMTDLALE 422

Query: 288 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 347
           TE+   Q++Y+ T + S  +L+++IN++LD +K+E+GK++LE +SF++R  ++  L   +
Sbjct: 423 TEMSREQREYMTTVKFSADSLLTVINDILDFSKIEAGKVDLETISFDIRECVETTLKTLA 482

Query: 348 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 407
            ++ +KG+EL   +S  +PE ++GDPGR RQI+ NL+GN+IKFT  G + + V L     
Sbjct: 483 LRADEKGLELLCDVSADLPEVVLGDPGRLRQIVVNLVGNAIKFTGSGEVSLRVGLA---- 538

Query: 408 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 467
                                               D    P +        +  +V DT
Sbjct: 539 ------------------------------------DPGEGPDQ--------MYFNVSDT 554

Query: 468 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
           G GI  E    +F  F Q   S +R +GGTG+GL+IS+ LV  M G I   S P  GS F
Sbjct: 555 GIGISPEKLESVFASFSQADTSTTRQYGGTGLGLTISRRLVELMGGRIWCESTPGKGSQF 614

Query: 528 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 587
            FT           +  +  +  +P  +     G+K L+VD      ++    ++  G++
Sbjct: 615 HFTVSL----PPVTDATAPVVVPKPLPL---LAGVKVLIVDDNKTNRRILEGLLRIWGME 667

Query: 588 VEVVSDQLQCLSQI-ASG--SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLF 644
           V    +    L+ + A+G       ++L +  + + D     + V  +++        + 
Sbjct: 668 VASAPEGDTALAMLHAAGLEGSPYRLLLTDMHMPKMD---GFMVVQQMKQDTSLALPTVM 724

Query: 645 LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRN--------- 695
           +L++      AN   + + I + ++KP+R   L  ++ RA+G    G I++         
Sbjct: 725 MLSSGGHHGDAN-RCEQLGISAYLLKPVRRQELQDAIARALGSSMDG-IKDKSLITQSTL 782

Query: 696 -WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
             +LP++   H      IL+ +DN VN K+A   L++ G +VV    G++A E      +
Sbjct: 783 VADLPAVRSLH------ILLAEDNEVNQKLAVRLLQKRGHSVVVANNGREAVE-ASESRK 835

Query: 755 FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
           +D   MD+QMPEMDG +AT                  ++I A E  S   + I+AMTA V
Sbjct: 836 YDLVLMDVQMPEMDGIQAT------------------IAIRAREAGSGARLAIVAMTALV 877

Query: 815 IQATYEECLRSGMDGYVSKPFEAEQL 840
           ++   E C+ + MDGY+SKP   ++L
Sbjct: 878 MKGDRERCMAADMDGYLSKPIRPQEL 903


>gi|452962749|gb|EME67856.1| multi-sensor hybrid histidine kinase, partial [Magnetospirillum sp.
           SO-1]
          Length = 914

 Score =  258 bits (660), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 186/671 (27%), Positives = 312/671 (46%), Gaps = 101/671 (15%)

Query: 192 FRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH--IFQATVNRIAKVEEDYHGMMEL 249
            R  E+R   K  + +P+      +G+  + ++ G      A++  + + +     ++  
Sbjct: 118 MRDRELRGVRKDGSEFPV-----EVGLSRLPAIGGRGLCVCASIRDVTERKRVEAEVLRA 172

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K+ AE A  AKS FLA +SHEIRTPMN ++GM  + + T LD  Q++Y+     SG+ L+
Sbjct: 173 KQTAEEATKAKSDFLANMSHEIRTPMNAIIGMSHLALQTRLDKKQRNYIEKVHRSGENLL 232

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +IN++LD +K+E+GK+ +E + F L  ++D++ SL   K++DKG+EL   ++  +P  L
Sbjct: 233 GIINDILDFSKIEAGKMAMERIDFRLEDVMDNLASLVGLKAEDKGLELLFSVASDIPTAL 292

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R  Q++ NL  N++KFTE G I V      E+V   E E EL             
Sbjct: 293 TGDPLRLGQVLINLGNNAVKFTETGEIIVGA----ELVGRTETEAEL------------- 335

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
              H W                            V D+G G+  E   ++F  F Q   S
Sbjct: 336 ---HFW----------------------------VRDSGIGMTPEQCGKMFQSFSQADSS 364

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R +GGTG+GL+ISK LV  M G I   S P  GS F F             H    + 
Sbjct: 365 TTRKYGGTGLGLAISKTLVELMGGRIWVESEPGKGSVFHF-------------HTRLGVQ 411

Query: 550 NQPNS----VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
            QP +     S E  G++ LVVD      ++     +  G++V    D  Q L  +A+  
Sbjct: 412 AQPAARRVFRSDELMGLRVLVVDDNASAREILSSMAKGFGLEVGTAWDGRQALEMVAAAE 471

Query: 606 K---IINMILVEQEVWEKDTSVSTLFVNNL-RKLGCGFQSKLFLLANSISSSRANTSTDG 661
                 ++IL++   W+         V  L R       + + + A     + +N    G
Sbjct: 472 ARGLAYDLILMD---WKMPVMDGVEAVQQLQRDRSERVPAVVMVTAYGREEAMSNAQERG 528

Query: 662 VSIPSVIMKPLRSSMLAASLQRAM--GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 719
             + +V+ KP+ ++ L  ++   +  GV  +  +++           L G ++L+V+DN 
Sbjct: 529 AVLKTVLTKPVTAASLLEAIGEILGKGVAAESYVQDRAETYKEAMRALEGSRVLLVEDNE 588

Query: 720 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
           +N ++A   L + G  VV    G+ A ++L     FD   MD QMP MDG+ AT++I   
Sbjct: 589 MNQELATELLSQAGMEVVLANHGQAALDILAGDRGFDGVLMDCQMPVMDGYTATRMI--- 645

Query: 780 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
                    RG  +++         +P++AMTA+ +    E+ + +GM  +++KP   E 
Sbjct: 646 ---------RGNPALDG--------IPVIAMTANAMTGDREKVIEAGMADHIAKPLNLEN 688

Query: 840 LYREVSRFFPP 850
           ++  ++R+  P
Sbjct: 689 MFATMARWIKP 699


>gi|409992461|ref|ZP_11275649.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
            Paraca]
 gi|291568252|dbj|BAI90524.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39]
 gi|409936686|gb|EKN78162.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
            Paraca]
          Length = 1494

 Score =  258 bits (660), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 211/694 (30%), Positives = 323/694 (46%), Gaps = 127/694 (18%)

Query: 212  ISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEI 271
            +++ +GI +  +    + +  V     +E     + E K  AE A  AKS+FLAT+SHEI
Sbjct: 687  VASQVGITIAQA---KLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEI 743

Query: 272  RTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 331
            RTPMN V+GM  +L+D EL   Q+D+V T + SG AL+++IN++LD +K+ESGKLELE  
Sbjct: 744  RTPMNAVIGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQ 803

Query: 332  SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT 391
             F LR  L++ L L SG++ +KG+ELA  I    P+T++GD  R RQ++ NL+ N+IKFT
Sbjct: 804  PFKLRNCLEECLELLSGRAAEKGLELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFT 863

Query: 392  EKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFK 451
             +G + + V                       + +P A      K  K F+     S F 
Sbjct: 864  SEGEVILAVK----------------------ATHPDAK-----KDVKKFDD----SDFT 892

Query: 452  SSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRM 511
             S      L   V DTG GIP +   R+F  F QV  S +R +GGTG+GL+IS+ L   M
Sbjct: 893  ESH---YVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRLSQLM 949

Query: 512  KGEIGFVSIPNI-------------------------------GSTFTFTAVFGNGSSTS 540
             G++   S  N+                               GS F FT V        
Sbjct: 950  NGKMWVASWVNLLDEYHDETSSLISSVAGNPPPDFVRPQVFRPGSIFYFTIVCSGF---- 1005

Query: 541  NEHNSQQMNNQPN--SVSSEF-QGMKALVVDPRPIRAKVSRYHIQRLG---IQVEVVSDQ 594
                     N P+    S +F  G K L+V+   I  K+    ++  G   ++V+  +D 
Sbjct: 1006 ---------NTPDLGEFSDDFLHGKKVLIVEHHDINQKLLIRQVKSWGMVPVRVKTGADA 1056

Query: 595  LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK--LGCGFQSKLFLLA----N 648
            L+ L      +  +++I++   + + D +     +  L K  +   ++ K F L      
Sbjct: 1057 LKVLHD----NPELDLIILGINLPDMDEATLASRIRQLEKQMIAGKYRQKPFNLVMFNYA 1112

Query: 649  SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG----VGNKGNIRNWEL---PSM 701
            S + S       GV++  ++ KPL+ S    +L +       +    +I+N E    P++
Sbjct: 1113 SNTDSLRRLEAQGVNVAGLVNKPLKQSQFYNTLMQIFADSQTIEKHYHIKNAESGYDPAI 1172

Query: 702  SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761
               H  L  +IL+ +DN  N KVA   L+R G        G +  + L    Q+D   MD
Sbjct: 1173 PQPHANL--RILLAEDNVTNQKVAIKLLERLGYRADIAGNGLEVLDALN-RQQYDVILMD 1229

Query: 762  IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNF---HVPILAMTADVIQAT 818
            +QMPEMDG E +K I                   AY + S+       I+AMTA+ +Q  
Sbjct: 1230 VQMPEMDGLETSKHI-----------------CAAYSDGSDMGPRKPRIIAMTANAMQGD 1272

Query: 819  YEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
             E CL +GMD Y++KP   E L   +++  P  P
Sbjct: 1273 REMCLNAGMDDYITKPVRREALAEALAKCHPISP 1306


>gi|422922661|ref|ZP_16955842.1| sensory box protein [Vibrio cholerae BJG-01]
 gi|341645454|gb|EGS69601.1| sensory box protein [Vibrio cholerae BJG-01]
          Length = 1331

 Score =  258 bits (660), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 299/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVSRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N      + R   +G+ +L+V+DN
Sbjct: 947  L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFVGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIRA 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1060 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVSD 1113


>gi|428225220|ref|YP_007109317.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
 gi|427985121|gb|AFY66265.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
          Length = 2144

 Score =  258 bits (659), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 197/643 (30%), Positives = 305/643 (47%), Gaps = 98/643 (15%)

Query: 209  LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 268
            L A++  +GI +  +   H+ +  V +  ++      +   K++A+AA+ +KS FLA +S
Sbjct: 1439 LEAVAAQMGIALAQA---HLLEQAVEQREELVAKNAALETAKREADAANRSKSDFLAMMS 1495

Query: 269  HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 328
            HEIRTPMN V+GM  +L DTEL   Q D+V T ++SG+ L++LIN++LD +K+ESGKL L
Sbjct: 1496 HEIRTPMNAVIGMASLLFDTELSPQQMDFVETIRSSGEVLLTLINDILDFSKIESGKLHL 1555

Query: 329  EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 388
            E   FNLR  ++D L L + ++  KG+EL  +I+   P    GD  R RQ++ NL+ N+I
Sbjct: 1556 EEQRFNLRRCVEDALDLIATQATKKGLELICWIASGTPLHFQGDVTRLRQVLVNLLSNAI 1615

Query: 389  KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 448
            KFT+ G + V+V                                              + 
Sbjct: 1616 KFTQAGEVMVSV---------------------------------------------ESQ 1630

Query: 449  PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 508
            P   S+     L  +V DTG GI  +    +F PF QV  S++R +GGTG+GLSISK L 
Sbjct: 1631 P--CSNGGCYKLHFAVHDTGIGIHPDQLRHLFQPFSQVDSSMTRRYGGTGLGLSISKRLC 1688

Query: 509  GRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVD 568
              M G +   S   +GSTF FT    + S   +E       +  ++V  + +G + LV D
Sbjct: 1689 EMMGGRVWVESEVGVGSTFHFTVRLQSISEPMSE-------DVWSNVLPKMKGKRVLVAD 1741

Query: 569  P-RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL 627
              +  R  ++R  IQ   +QV+  +   + ++ +   S+   +IL  Q        ++  
Sbjct: 1742 DNQTTRETIAR-QIQEWEMQVQTAASGAEAIAHLHQLSQYDLVILDHQMPSGNGFDIAA- 1799

Query: 628  FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687
                +R+L  G    + +++  I S       D + + +++ KPL+ S     L +    
Sbjct: 1800 ---QIRQLPGGQGLPIVVMSTGIESPSPEAIAD-IGVTALLAKPLKQSQFYDVLAQIFLT 1855

Query: 688  GNKGNIRNWELPSMSLRHLLLGRK--------ILIVDDNNVNLKVAAAGLKRYGAAVVCV 739
            G         LP  S R L+ G +        IL+V+D  VN K+    L+R G      
Sbjct: 1856 GQVM------LPQRSAR-LMSGDRLSEQYPLHILLVEDVPVNQKLVLQMLQRLGYRADVA 1908

Query: 740  ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYEN 799
              G +A   L     +D   MD+QMPEMDG EAT+ IR  +              + Y  
Sbjct: 1909 NNGHEAIAALR-RQPYDVVLMDVQMPEMDGLEATRWIRRQDPTLLK---------DPY-- 1956

Query: 800  VSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                   I+AMTA  +Q   E CL +GM+ Y+SKP   E L +
Sbjct: 1957 -------IIAMTAHAMQGDRELCLDAGMNDYLSKPIRLEGLVK 1992



 Score = 46.2 bits (108), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 26/151 (17%)

Query: 698  LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 757
            LP M       G+++L+ DDN    +  A  ++ +   V     G +A   L    Q+D 
Sbjct: 1729 LPKMK------GKRVLVADDNQTTRETIARQIQEWEMQVQTAASGAEAIAHLHQLSQYDL 1782

Query: 758  CFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQA 817
              +D QMP  +GF+    IR++                         +PI+ M+  +   
Sbjct: 1783 VILDHQMPSGNGFDIAAQIRQLPGGQG--------------------LPIVVMSTGIESP 1822

Query: 818  TYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            + E     G+   ++KP +  Q Y  +++ F
Sbjct: 1823 SPEAIADIGVTALLAKPLKQSQFYDVLAQIF 1853


>gi|182415728|ref|YP_001820794.1| response regulator receiver sensor hybrid histidine kinase
           [Opitutus terrae PB90-1]
 gi|177842942|gb|ACB77194.1| response regulator receiver sensor hybrid histidine kinase
           [Opitutus terrae PB90-1]
          Length = 758

 Score =  258 bits (659), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 192/615 (31%), Positives = 285/615 (46%), Gaps = 102/615 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K  AEAAD AKS FLA +SHEIRTPMNGVLGM ++L+ T L+  Q D   T   SG++L+
Sbjct: 220 KDAAEAADRAKSVFLANMSHEIRTPMNGVLGMANLLLATPLNPEQHDLAETLCQSGESLL 279

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+E+G++ELEA+ F+L   L+  L L +  +  K +EL V I   VP  +
Sbjct: 280 TIINDILDFSKIEAGRMELEAIDFDLADNLELALDLHAEAAARKHLELVVNIDPAVPRHV 339

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDPGR RQI+ NL+GN+IKFTEKG + V V      VD                     
Sbjct: 340 RGDPGRLRQILLNLVGNAIKFTEKGEVVVKV-----TVD--------------------- 373

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
              H+W                    + + L  +V DTG GIP   Q ++F PF+Q   S
Sbjct: 374 ---HNWP-------------------NRVLLRFAVTDTGIGIPEWVQEKLFQPFVQADTS 411

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R  GG+G+GL I K L   M G IG  S PN GSTF FT    +              
Sbjct: 412 TTRRFGGSGLGLVICKRLAELMSGSIGVESKPNEGSTFWFTVELKHAF------------ 459

Query: 550 NQPNSVS----SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSDQLQCLSQIA 602
             P +V     S  +G  AL+VD       + ++      ++   +E V + L  L +  
Sbjct: 460 -HPVTVGVVPLSTLRGHHALIVDDNATNRSLLKHLCNAWSLRHSVMESVDEALVELHRAT 518

Query: 603 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
           +     ++++ +  +  +D       +N              +L  S       +  D  
Sbjct: 519 AAGTPFDLVITDHHMPGRDGLDLAAAINR----DTTIPRPALVLLTSRGERLPQSQLDEY 574

Query: 663 SIPSVIMKPLRSSMLAASLQRAM--------GVGNKGNIRNWELPSMSLRHLLLGRKILI 714
              +  +KP+ +  L  +L R +         + +   ++    P+   R       ILI
Sbjct: 575 RFAACELKPVHARSLHTTLARVLAHIRPGVPALPDGNGVKPAAPPAKEAR-------ILI 627

Query: 715 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATK 774
            +DN VN KV    L+  G     V  G++  E L     +    MD QMPEMDG EAT+
Sbjct: 628 AEDNPVNQKVTLLQLRNLGYPADVVPNGREVLEALR-RKAYALVLMDAQMPEMDGVEATR 686

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
            IRE +         G+ +I +        + I+AMTA+ +    E CL +GMD Y++KP
Sbjct: 687 KIREAQAA-------GDRTIPSP-------LRIIAMTANAMTGDRELCLAAGMDDYLAKP 732

Query: 835 FEAEQLYREVSRFFP 849
            +   L   ++R+ P
Sbjct: 733 VKPGDLRDMLARYLP 747


>gi|147674561|ref|YP_001216911.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae O395]
 gi|227117816|ref|YP_002819712.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae O395]
 gi|262169340|ref|ZP_06037032.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
 gi|146316444|gb|ABQ20983.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae O395]
 gi|227013266|gb|ACP09476.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae O395]
 gi|262022153|gb|EEY40862.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
          Length = 1331

 Score =  258 bits (659), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 299/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N      + R   +G+ +L+V+DN
Sbjct: 947  L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFVGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIRA 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1060 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVSD 1113


>gi|398846008|ref|ZP_10603014.1| PAS domain S-box [Pseudomonas sp. GM84]
 gi|398252999|gb|EJN38150.1| PAS domain S-box [Pseudomonas sp. GM84]
          Length = 1462

 Score =  258 bits (659), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 188/629 (29%), Positives = 302/629 (48%), Gaps = 88/629 (13%)

Query: 235  RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQ 294
            R   V  D   +++ +  AE A  AKS+FLA +SHEIRTPMN ++GM  + + T LD  Q
Sbjct: 711  RATGVNIDVTELIKARAVAEEATRAKSEFLANMSHEIRTPMNAIIGMSHLALRTGLDSKQ 770

Query: 295  QDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKG 354
            + Y+     S + L+ +IN++LD +K+E+G++ LE + F L  +LD   +L   K+++K 
Sbjct: 771  RHYIEKVHRSAENLLGIINDILDYSKIEAGRMGLEYIPFRLEDVLDSFANLIGLKAEEKK 830

Query: 355  VELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVET 414
            +EL       +P  LIGDP R  QI+ NL  N++KFTE G          EVV  +E   
Sbjct: 831  LELLFQTPPDLPTALIGDPLRLGQILINLGNNAVKFTETG----------EVVAGVE--- 877

Query: 415  ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLE 474
            E+S++   +S        H W                            + DTG G+ +E
Sbjct: 878  EVSATDEQVS-------LHFW----------------------------MRDTGIGMSVE 902

Query: 475  AQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534
               R+F  F Q   SI+R +GGTG+GLSISK LV  M G I   S    GSTF F    G
Sbjct: 903  QCERMFQSFSQADSSITRKYGGTGLGLSISKKLVEMMGGRIWVESTLGQGSTFHFQVRLG 962

Query: 535  NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 594
                      +Q+M N     + E  GM+ LVVD      ++     +  G++ +V    
Sbjct: 963  ----LQQGAQAQRMFN-----AGELLGMRVLVVDDNASAREILCAMARSFGLEADVAQSG 1013

Query: 595  LQCLSQIASG---SKIINMILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQSKLFLLANS 649
             + L  +AS    ++  +++L++  +   D   +VS +  ++LR         + + A  
Sbjct: 1014 TEALGLLASAEARAQPYDLVLMDWRMPGMDGMETVSRMNADSLRHT----PPVIMVTAFG 1069

Query: 650  ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP--SMSLRHLL 707
               ++      G+ IP V+ KP+  S L  ++   +G   +G  R  E    S S +  L
Sbjct: 1070 RDEAQEEAERQGIQIPVVLTKPVTPSSLLEAIGTVLGRVQQGETRAAERSGHSASNQAGL 1129

Query: 708  LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
             G ++L+V+DN +N ++A   L+  G  +     G++A ++L    +FD   MD QMP M
Sbjct: 1130 RGARLLLVEDNEMNQELARELLESVGVTLRLAGHGQEALDILAVDSRFDGVLMDCQMPVM 1189

Query: 768  DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
            DG+ AT+ IRE +  F                     +P++AMTA+ ++   E+ L SGM
Sbjct: 1190 DGYTATRKIRE-QPRFA-------------------QLPVIAMTANAMEGDREDALASGM 1229

Query: 828  DGYVSKPFEAEQLYREVSRFFPPIPDRSP 856
            + ++ KP   + ++  ++R+  P     P
Sbjct: 1230 NDHIPKPLNVDAMFATLARWIRPKASSQP 1258


>gi|158338408|ref|YP_001519585.1| two-component hybrid sensor and regulator [Acaryochloris marina
            MBIC11017]
 gi|158308649|gb|ABW30266.1| two-component hybrid sensor and regulator [Acaryochloris marina
            MBIC11017]
          Length = 1076

 Score =  258 bits (659), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 191/603 (31%), Positives = 303/603 (50%), Gaps = 79/603 (13%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K +A+AA   KS+FLA +SHE+RTPMN V+GM  +L  T LD  QQD+V T ++SG AL+
Sbjct: 541  KDRADAASQVKSEFLANMSHELRTPMNAVIGMTGLLTHTSLDAQQQDFVDTIRSSGDALL 600

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
             LIN++LD +K+E+GKLE+E   FNL++ +++ L L + ++  KG+E+A      +P  +
Sbjct: 601  CLINDILDFSKIEAGKLEVEEQPFNLKSCIEEALKLVAPRAFKKGLEIAYLADPDLPCGI 660

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GD  R RQ++ NL+ N +KFT+ G + V    V+EV   I+                  
Sbjct: 661  VGDVTRLRQVLVNLLTNGVKFTDNGEVIV---YVKEVTAEIQ------------------ 699

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                        +++GS S  +S    L     +V+DTG GIP +  +R+F  F QV  S
Sbjct: 700  ------------DREGSGSEGQSPRR-LFQF--AVKDTGIGIPEDRLNRLFQSFSQVDSS 744

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+ISK L   M G+I   S   IGSTFTFT       +          +
Sbjct: 745  TTRKYGGTGLGLAISKRLCELMGGKIWVDSEIGIGSTFTFTIAAPIADT---------FD 795

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
              P    +  +G + L+VD      K+        G+  +        L ++  G    +
Sbjct: 796  CAPIHDLAPLKGQRLLIVDDNLTNRKILTKFANIWGMYSQAAPSGPAAL-ELLRGRSSFD 854

Query: 610  MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
            + +V+ ++ E D       ++ L+K    ++    ++ +S+     +T  D     +++ 
Sbjct: 855  LAVVDMQMPEMDGLTLARRIHGLQK----YKDLPLVMLSSLGVEAISTPMDKSLFYAILN 910

Query: 670  KPLRSSMLAASLQRAMGVGNKGNIRNWEL----PSMSLRHLLLGRKILIVDDNNVNLKVA 725
            KP++ + L+A L RA+   ++ N +N E     PS + + L     +L+ +D  VN KVA
Sbjct: 911  KPIQEAQLSAILVRAVTRQSE-NTQNSEFDCPQPSTNSKTL----HLLLAEDVVVNQKVA 965

Query: 726  AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785
               LK+ G        GK+  E L     +D   MD+QMPEMDG  A++ I+E       
Sbjct: 966  LLILKQLGYEADVANNGKEVLEALH-RQPYDVVLMDLQMPEMDGLTASRAIQET------ 1018

Query: 786  RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 845
                   S EA          I+A+TA+ +Q   E+CL +GM  YVSKP  +E+L   + 
Sbjct: 1019 ------WSPEARPY-------IIALTANAMQGDREKCLEAGMQDYVSKPIRSEELKAALE 1065

Query: 846  RFF 848
            R+ 
Sbjct: 1066 RYL 1068


>gi|254225353|ref|ZP_04918965.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae V51]
 gi|125622194|gb|EAZ50516.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae V51]
          Length = 1331

 Score =  258 bits (659), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 299/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N      + R   +G+ +L+V+DN
Sbjct: 947  L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFVGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-DHADFDLVLMDMQMPVMDGITATEHIRA 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1060 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVSD 1113


>gi|406955643|gb|EKD84035.1| hypothetical protein ACD_39C00287G0001, partial [uncultured
           bacterium]
          Length = 795

 Score =  258 bits (659), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 181/612 (29%), Positives = 307/612 (50%), Gaps = 97/612 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K  AEAA   KS FLA +SHEIRTPMN ++GM  + + T+L   Q++Y+   Q + + L+
Sbjct: 53  KTMAEAATETKSTFLANMSHEIRTPMNAIIGMSQLALQTDLTHQQRNYIEKVQLAAQNLL 112

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +IN++LD +K+E+GK+ ++   F L  +L++   + S K+++KG+EL   I+  VP  L
Sbjct: 113 GIINDILDFSKIEAGKMAIDKTDFWLEDVLNNFAIITSLKAEEKGIELIFDIAPDVPLGL 172

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R  QI+TNL  N++KFT+ G I V V    E   + E   EL             
Sbjct: 173 VGDPLRLNQILTNLGNNAVKFTDSGEIMVGV----EQRANDEKSAEL------------- 215

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
              H W                            V+D+G G+    Q ++F PF QV  S
Sbjct: 216 ---HFW----------------------------VKDSGTGMNQSQQEKLFMPFSQVDDS 244

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG-NGSSTSNEHNSQQM 548
            SR  GGTG+GL+ISK LV  M G+I  VS P  GSTF FTA  G     TS+E + + +
Sbjct: 245 ASRKSGGTGLGLAISKNLVEDMHGKIWVVSEPGHGSTFHFTARLGLQHRQTSSEASMKSL 304

Query: 549 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV---VSDQLQCLSQIASGS 605
                      +G + L++        V  + I+  G+ VE      D ++ L  ++S S
Sbjct: 305 -----------KGKRMLLLAKNSSERNVLTHSIEHSGLVVESAGDCQDVIKQLKNLSSES 353

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD--GVS 663
           ++  +I++  ++   ++    L + +           + L+  +   ++   S D  G+S
Sbjct: 354 RLPELIIISSDITGANSIECALKIRD----SAYSNIPVILITGAYQLAKVLYSADRLGIS 409

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNI-----RNWELPSMSLRHLLLGRKILIVDDN 718
              V+ +P+  + L A++  A+G+    +      +N  LP   +     G ++L+V+DN
Sbjct: 410 PIRVLSRPVFPAALRAAMLEALGLVKTPDFIEQKSKNSPLP---IPEAPSGARLLLVEDN 466

Query: 719 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
            +N ++A   L++   +V+   +G++A ++L    QFD   MD QMP MDG++ T+IIR 
Sbjct: 467 EMNQELAIEVLRQVNISVILARQGQEALDILEKDRQFDGILMDCQMPVMDGYKTTRIIR- 525

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                         +I   ++     +PI+AMTA+ +    E+ L +GM+ +++KP +  
Sbjct: 526 --------------AIPGLQD-----IPIIAMTANAMAGDREKALDAGMNDHIAKPIDVS 566

Query: 839 QLYREVSRFFPP 850
           +++  ++R+  P
Sbjct: 567 KMFATLARWIKP 578


>gi|83311392|ref|YP_421656.1| Signal transduction histidine kinase [Magnetospirillum magneticum
            AMB-1]
 gi|82946233|dbj|BAE51097.1| Signal transduction histidine kinase [Magnetospirillum magneticum
            AMB-1]
          Length = 1196

 Score =  258 bits (659), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 187/619 (30%), Positives = 285/619 (46%), Gaps = 116/619 (18%)

Query: 253  AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
            AE A  AKS FLAT+SHEIRTPMNGVL M  +L D  L   Q++  R  + S  +L+++I
Sbjct: 529  AEEASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPLPAEQREMARVIRDSATSLLTII 588

Query: 313  NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
            N++LD +K+E+ KL+LE V  +L  +++ V  L + ++Q+KG+ L  ++   + + ++GD
Sbjct: 589  NDILDFSKIEADKLQLELVDLSLSEVVEGVADLLTIRAQEKGISLITFVDPALTDMVVGD 648

Query: 373  PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 432
            P R RQIITNL GN+IKFT+KG++ + V  +                             
Sbjct: 649  PIRLRQIITNLAGNAIKFTDKGYVRIAVRAL----------------------------- 679

Query: 433  HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492
                       D    P +        L  S+ DTG G+  E Q+R+F PFMQ   +ISR
Sbjct: 680  -----------DPRERPLR--------LEFSITDTGIGLDSEQQARLFEPFMQADITISR 720

Query: 493  THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 552
             +GGTG+GLSI + LV  M GEIG  S    GSTF F                 Q+  +P
Sbjct: 721  RYGGTGLGLSICRRLVAMMGGEIGVRSNVGQGSTFWF-----------------QVPLEP 763

Query: 553  NSVSSE----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII 608
              V +E      G+  LV+   P+ A+  R ++  LG QV VV+         ++   + 
Sbjct: 764  AEVEAEPPLDLSGIAVLVLAEGPVAAECLRQYLGHLGAQVAVVA---------SAEGAVA 814

Query: 609  NMILVEQEVWEKDTSVSTLFVNNLRKLGCG----------FQSKLFLLANSISSSRANTS 658
             +       W  D ++     +   +LG             + K+ +L    + +   + 
Sbjct: 815  AVRAAALAGWTYDVALLDGGQDFRLRLGVAGALMTAAGPDLELKVAMLVAQDAFAAVASE 874

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMG--------VGNKGNIRNWELPSMSLRHLLLGR 710
                 + +V+ KP+R   L  ++  A+G            G    W  P+M       G 
Sbjct: 875  VKAAGLYAVLPKPIRRRQLWRNVAVAVGRATPEAEAADGTGAEEGWRPPTME-EAAAAGA 933

Query: 711  KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
             IL+ +DN  N  V    ++R G A+  V  G +A E  M    +     D  MPEMDG+
Sbjct: 934  LILVAEDNPTNKVVIRHLMERLGYAIEVVGNGTEAWE-RMQIRDYGLLLTDCHMPEMDGY 992

Query: 771  EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            E T+ IRE                  +E  +   +PI+A+TAD +  T   CL SGM+ +
Sbjct: 993  ELTQRIRE------------------WEVETGHDLPIVALTADALAGTARRCLDSGMNAF 1034

Query: 831  VSKPFEAEQLYREVSRFFP 849
            ++KP +  QL   + R  P
Sbjct: 1035 LAKPIDLVQLDSTIRRLLP 1053


>gi|121591221|ref|ZP_01678522.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae 2740-80]
 gi|153818352|ref|ZP_01971019.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae NCTC 8457]
 gi|227081520|ref|YP_002810071.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae M66-2]
 gi|229505068|ref|ZP_04394578.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
 gi|298498565|ref|ZP_07008372.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae MAK 757]
 gi|121546919|gb|EAX57070.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae 2740-80]
 gi|126511099|gb|EAZ73693.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae NCTC 8457]
 gi|227009408|gb|ACP05620.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae M66-2]
 gi|229357291|gb|EEO22208.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
 gi|297542898|gb|EFH78948.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae MAK 757]
          Length = 1331

 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 299/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N      + R   +G+ +L+V+DN
Sbjct: 947  L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFVGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIRA 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1060 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVSD 1113


>gi|114048796|ref|YP_739346.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890238|gb|ABI44289.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1767

 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 180/600 (30%), Positives = 298/600 (49%), Gaps = 89/600 (14%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++A+AA  AK  FLA +SHEIRTPMN ++GM  + + TELD  Q++YV   + + K+L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASKSLL 1089

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            S+IN++LD +K+E+GKL++E+V F L  +L+D+  +FS K+  K +EL   ++  VP  L
Sbjct: 1090 SIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPNVPRHL 1149

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GD  R  Q++ NLM N+IKFTE+G + +++ LVE+  D + +   +  S   L+    A
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQNDDVVLRFSVRDSGIGLTAEQQA 1209

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                  K FK+F+Q                      DT                     S
Sbjct: 1210 ------KLFKSFSQ---------------------ADT---------------------S 1221

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+I K LV  M G IG  S    GSTF FT               Q  +
Sbjct: 1222 TTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYFTVKL------------QISS 1269

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             Q  +V+ E +GM  LV D       + R  ++ +G +V+ V    + +++ +     + 
Sbjct: 1270 GQKLTVAQELEGMSILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVTRCSQQEYAVA 1329

Query: 610  MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
            +I      W+            +++L     +   L+ ++ ++    +  + + +   I 
Sbjct: 1330 LI-----DWKMPNLDGIETAKQIKQLAKN--APRILMVSAHATQEFLSQIEALGLAGYIS 1382

Query: 670  KPLRSSMLAASLQRAMG-VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
            KP+ +S L   +  ++G  G     RN E     L   L G++IL+V+DN +NL+VA   
Sbjct: 1383 KPISASRLLDGIMNSLGRAGVLPVRRNSESIDPKLLLPLKGKRILLVEDNEMNLEVATEF 1442

Query: 729  LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
            L++ G  +     G+ A + L     FD   MD QMP MDG++AT+ IR          +
Sbjct: 1443 LEQVGIILSIATNGQIALDKL-AQQSFDLVLMDCQMPVMDGYQATQAIR----------K 1491

Query: 789  RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            R E++           +P++AMTA+ +    E CL++GM+ +++KP E   LY+ + ++ 
Sbjct: 1492 RPELA----------ELPVIAMTANAMAGDKEMCLKAGMNDHIAKPIEVNLLYQTLLKYL 1541


>gi|229529572|ref|ZP_04418962.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
 gi|229333346|gb|EEN98832.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
          Length = 1342

 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 298/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 603  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 662

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 663  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 722

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 723  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 771

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 772  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 794

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 795  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 852

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 853  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 902

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 903  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 957

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N      + R    G+ +L+V+DN
Sbjct: 958  L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1011

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1012 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIRA 1070

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1071 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1110

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1111 KFY-QVLRHFLQVSD 1124


>gi|153825247|ref|ZP_01977914.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae MZO-2]
 gi|149741075|gb|EDM55134.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae MZO-2]
          Length = 1331

 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 299/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N      + R   +G+ +L+V+DN
Sbjct: 947  L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFVGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIRA 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1060 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVSD 1113


>gi|390949067|ref|YP_006412826.1| signal transduction histidine kinase [Thiocystis violascens DSM
           198]
 gi|390425636|gb|AFL72701.1| signal transduction histidine kinase [Thiocystis violascens DSM
           198]
          Length = 690

 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 185/599 (30%), Positives = 286/599 (47%), Gaps = 89/599 (14%)

Query: 253 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
           AEAA+ AKSQF+A +SHEIRTPMNG+LGM ++ +DTEL  TQ+DY+   ++S + L++++
Sbjct: 171 AEAANAAKSQFIANMSHEIRTPMNGILGMTELALDTELTPTQRDYLNIVKSSAETLLTIL 230

Query: 313 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
           N++LD A++++GK+ +EA+ F+L  ++ + L     ++++KG+EL   +   +P   +GD
Sbjct: 231 NDILDFARLDAGKMHIEAIPFDLSELVAETLKAIGMRARNKGLELVCDLPADLPRQSLGD 290

Query: 373 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 432
           PGR RQ++ NL  N+IKFT  G I V V                                
Sbjct: 291 PGRLRQVLMNLCDNAIKFTPTGEIEVKVR------------------------------- 319

Query: 433 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492
                         +SP +    D I   ++V DTG GIP    + IF  F Q   +I+R
Sbjct: 320 --------------SSPNRDPRLDDIQ--ITVRDTGIGIPAAKLAEIFEAFSQADATITR 363

Query: 493 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 552
             GGTG+GLSIS  L+  M G+I   S    GS F  T        +++        ++ 
Sbjct: 364 QFGGTGLGLSISARLLELMGGQIRVESREGQGSAFHLTLPLARIEPSASSPPPSPWRHK- 422

Query: 553 NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK---IIN 609
                     +ALVVD  PI  +     ++  G+         + L+   SG       +
Sbjct: 423 ----------RALVVDDHPINRETLAGWLRHWGLTTLEAGSGQEALALARSGQSSRTPFD 472

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
           ++L++  + + D          L   G   Q ++ +L+   S   A    D + I + + 
Sbjct: 473 LLLLDARMPDMD---GLELAARLVAEGLIAQGRMVMLSCGGSPGNAQRGQD-LGIAATLT 528

Query: 670 KPLRSSMLAASLQRAMG-VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
           KP     L  +L R +  + +  +      P    R    G +IL+V+DN +N K+A   
Sbjct: 529 KPATPRELIETLTRLLDPMVSAASPPPQTPPPQDERQ---GARILLVEDNPINQKLARKL 585

Query: 729 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
           L+R+G  V   E GK A +L   P  FD   MD+QMP MDG EAT+ IR+ E        
Sbjct: 586 LERWGHEVTLAENGKIAVDLF-EPSAFDLVLMDMQMPVMDGIEATRRIRDKE-------- 636

Query: 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
           RG               PI+AMTA+V+ +    CL +GMD ++ KP   + L   +SRF
Sbjct: 637 RGSA-----------RTPIVAMTANVMASDRARCLEAGMDEHLPKPLRPKHLEEMISRF 684


>gi|429887218|ref|ZP_19368743.1| CheY-like receiver [Vibrio cholerae PS15]
 gi|429225870|gb|EKY32068.1| CheY-like receiver [Vibrio cholerae PS15]
          Length = 1331

 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 299/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD+TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDMTQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N      + R    G+ +L+V+DN
Sbjct: 947  L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIRA 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1060 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVSD 1113


>gi|337265957|ref|YP_004610012.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
            WSM2075]
 gi|336026267|gb|AEH85918.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
            WSM2075]
          Length = 1255

 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 192/638 (30%), Positives = 294/638 (46%), Gaps = 120/638 (18%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + E +++A  AD AKS+FLA +SHEIRTPMNGVLGM ++L  + LD  Q+ +      SG
Sbjct: 690  LREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDPKQKTFTDIIVKSG 749

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
             AL+++IN++LD +K+++G+L L+   FNL   ++DV +L S ++++K +EL V I  R+
Sbjct: 750  NALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRIEPRL 809

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
                IGD GR RQI+TNL+GN++KFT++GH+ V V                         
Sbjct: 810  GSLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVT------------------------ 845

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                               G   P  +       L +SV DTG GIP E    +F  F Q
Sbjct: 846  -------------------GERMPTGT------KLTISVTDTGIGIPEEKLKLVFEKFSQ 880

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
            V  S +R H GTG+GL+I+  LV  M G+IG  S    GSTF F         ++ + N 
Sbjct: 881  VDTSSTRRHEGTGLGLAITSRLVELMGGKIGVESAEGKGSTFWFEVTL----PSAEQQNG 936

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL---GIQVEVVSDQLQCLSQIA 602
            Q++   P  V+    G + L+VD   +   +    +          E  ++ L+ L   A
Sbjct: 937  QRI--MPVDVT----GARVLIVDDNAVNRAILTEQMTSWTFDSCAAESGAEGLKVLIAAA 990

Query: 603  SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
            +    ++ ++++ ++     +     V N      G  +   ++  S+  S ANTS   +
Sbjct: 991  AYGVPVDCVVLDYQMPGMSGAEMARIVRNT----AGLANTPIIMLTSVDQSLANTSYRDL 1046

Query: 663  SIPSVIMKPLRSSMLAASL------QRAMGVGNKGNIRNWELPSMSLRHLLL-------- 708
             I + ++KP RSS+L  +L       R   VG+       E P+   R  L         
Sbjct: 1047 GIDAQLIKPARSSVLLETLVATVQRHRHTTVGHAAQPSAGEAPNAPQRQSLAPSEQRAQL 1106

Query: 709  ---------------GRK--ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 751
                           G++  IL+ +DN VN  V    L   G     V  G+KA +    
Sbjct: 1107 QPPPVRPRLPAVGGDGQRLDILVAEDNEVNQMVFTQILGETGYGFEIVSNGRKALDAF-- 1164

Query: 752  PHQFDAC--FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 809
              + + C   MD+ MPEM G EAT  IR +E +                  +  HVPI+ 
Sbjct: 1165 -GKLNPCMILMDVSMPEMSGLEATAAIRRLEED------------------TGTHVPIVG 1205

Query: 810  MTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
            +TA  ++   E CL +GMD Y+ KP     L  +V R+
Sbjct: 1206 VTAHALKGDRERCLEAGMDDYLPKPISPRALLEKVERW 1243


>gi|392548097|ref|ZP_10295234.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas rubra ATCC
            29570]
          Length = 1300

 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 173/595 (29%), Positives = 285/595 (47%), Gaps = 89/595 (14%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            M+  K+ A+     KS+FLA +SHEIR+PMN ++GM  + ++T+LD+ Q+ YV     + 
Sbjct: 554  MLAAKELADKNAKVKSEFLANMSHEIRSPMNAIIGMAHLALNTQLDIKQRSYVEKIDNAA 613

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            K L+ L+N++LD +K+E+GK+E+E+  F L  +LD+V ++   K+ +K +EL   +   V
Sbjct: 614  KQLLKLLNDILDFSKIEAGKVEIESTHFQLDKVLDNVATIVGLKADEKQLELIFDVHPDV 673

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
                IGDP R  Q++ NL GN++KFTE+GH+ V +                         
Sbjct: 674  SNDYIGDPLRISQVLINLAGNAVKFTEQGHVTVNI------------------------- 708

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                    ++S       L+ SV DTG G+  E Q+R+F  F Q
Sbjct: 709  -----------------------SYQSQDEQSARLLFSVIDTGIGLSQEQQTRLFQSFAQ 745

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               SI+R +GGTG+GL+IS++LV  M GEI   S    GSTF FT      + T      
Sbjct: 746  ADTSITRKYGGTGLGLTISQHLVKLMGGEIFVESELGRGSTFYFTLPLPFATPT------ 799

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
             ++ +QP   +  F+   ALVVD   +  +V    +++ GI  ++ S    C+  + +  
Sbjct: 800  -RLLSQP---AEHFKNKMALVVDDNALAREVMAAMLKKFGIASKLFSSGDACIEYVRNQQ 855

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
               ++  ++  + +KD       ++ + +L     +  + L  +              I 
Sbjct: 856  PHFDIAFIDWHMPQKDG------IDTIMELHAQSPASQYALVTAYGRELGLKDEQKHIIS 909

Query: 666  SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 725
            S+++KP+  S +   LQ  +    +    N   P+   R  L G  IL+ +D  VN ++A
Sbjct: 910  SILLKPINPSSVFDCLQACL--APQPQQLNTSCPAQDSR--LSGLTILVAEDQPVNQEIA 965

Query: 726  AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785
               L  +GA V     G++A   +     FD   MD+QMP MDG +AT+ I ++      
Sbjct: 966  VEILSFHGATVAVANNGQEALNAVQST-TFDIVLMDMQMPVMDGLQATRAIGQL------ 1018

Query: 786  RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                           +  H PILAMTA+ +Q   + CL +GM G+++KP + E +
Sbjct: 1019 --------------TNTVHPPILAMTANAMQDDIQTCLDAGMVGHIAKPIDVENM 1059


>gi|238920900|ref|YP_002934415.1| signal transduction histidine-protein kinase BarA, putative
           [Edwardsiella ictaluri 93-146]
 gi|238870469|gb|ACR70180.1| signal transduction histidine-protein kinase BarA, putative
           [Edwardsiella ictaluri 93-146]
          Length = 918

 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 186/601 (30%), Positives = 294/601 (48%), Gaps = 101/601 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    +M T L  TQ DY+ T + S   L+
Sbjct: 278 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVMKTPLSATQIDYLHTIERSANNLL 337

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F LR  +D+V +L +  + DKG+EL + + + VPE +
Sbjct: 338 TIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVHNDVPEHV 397

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +Q++TNL+GN+IKFTEKG+I + + L  +   ++E+E ++       +G  ++
Sbjct: 398 LGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIELRSQTSQAVELEIQVHD-----TGIGIS 452

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           +R                                            QS++F  F Q   S
Sbjct: 453 ER-------------------------------------------QQSQLFQAFRQADAS 469

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           I+R HGGTG+GL I++ L+  M G+I F S P+ GSTF F             H   ++N
Sbjct: 470 ITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGSTFWF-------------HIRLELN 516

Query: 550 NQ--PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
           +   P S+  E  QG   L ++  P+ A+ +   ++   +QV          +Q+   S 
Sbjct: 517 HNAPPASLPVERLQGQTLLYIESNPVAAQCTLDMLKVTPLQVTYCPQ----FTQVIPDSH 572

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
             +++L    V    TS+ST  +     L      ++ L   S +   ++T      I S
Sbjct: 573 -YDILLFGLPV---KTSLSTESMQEKLSLALRLADRVILALPSHTLHDSDT-LKAAGIRS 627

Query: 667 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
            + KPL SS L  +L     + N   +R  ++ S     L L   ++ VDDN  NLK+  
Sbjct: 628 CLFKPLASSRLLPAL-----LDNALPLRAPQVISPHGARLPL--TVMAVDDNPANLKLIG 680

Query: 727 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
           A L      ++    G++A       H  D   MDIQMPEMDG   T+++R+   +    
Sbjct: 681 ALLGELVQHILLCHSGEEALAAARDRH-LDIILMDIQMPEMDGIRTTELLRQQSRHVTT- 738

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
                              PI+A+TA  I    E  LR+GMD Y++KP +   L + ++R
Sbjct: 739 -------------------PIIAVTAHAINGERERLLRAGMDDYLAKPIDENMLRQLLNR 779

Query: 847 F 847
           +
Sbjct: 780 Y 780


>gi|421351118|ref|ZP_15801483.1| sensory box protein [Vibrio cholerae HE-25]
 gi|395951563|gb|EJH62177.1| sensory box protein [Vibrio cholerae HE-25]
          Length = 1331

 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 195/615 (31%), Positives = 296/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N      + R    G+ +L+V+DN
Sbjct: 947  L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIR- 1058

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                                N     +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1059 -------------------ANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVSD 1113


>gi|428319759|ref|YP_007117641.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
            7112]
 gi|428243439|gb|AFZ09225.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
            7112]
          Length = 1700

 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 193/620 (31%), Positives = 303/620 (48%), Gaps = 85/620 (13%)

Query: 243  YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQ 302
            +    + ++ A  A   KS FLA +SHEIRTPMNGV+GM D+L+ T L   Q D+V+T +
Sbjct: 1005 FEQAQQAREAALEASRMKSLFLANMSHEIRTPMNGVMGMTDLLLKTNLTPEQLDFVQTLK 1064

Query: 303  ASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 362
             SG+ L+S+IN++LD +K+E+G++ LE + FNL   +++VL L +  +Q+KG+E+   I 
Sbjct: 1065 LSGQNLLSIINDILDLSKLEAGEMRLEILEFNLSICMNEVLDLLATPAQEKGIEVVALID 1124

Query: 363  DRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNT 422
              VP  + GD  R RQI+TNL+ N+IKFTE G + +                E++++ N 
Sbjct: 1125 SDVPVQIKGDAARLRQILTNLINNAIKFTEAGEVVI----------------EVANASN- 1167

Query: 423  LSGYPVADRCHSWKGFKTFNQD--GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 480
              G   A            NQ    +    K  + DL+ L+  V DTG GI  E + ++F
Sbjct: 1168 -PGLLAASE----------NQKILENIEKLKIENNDLMLLLFKVTDTGIGIAPEDKKKLF 1216

Query: 481  TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTS 540
              F QV  S +R +GGTG+GL+ISK LV  M G+IG  S P  GSTF FT        T 
Sbjct: 1217 QSFTQVDASTTRKYGGTGLGLAISKELVELMGGQIGVESTPGQGSTFWFTV------PTV 1270

Query: 541  NEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQC 597
             E+ +        ++ +   G K LV   +P   K+        G++VE V +    +  
Sbjct: 1271 KENLTAVGTACEVNLETVLAGRKMLVASDKPTVRKLLVRMAVLWGMEVEEVENGWMTIAS 1330

Query: 598  LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG----FQSKLFLLANSISSS 653
            L +  S +   +++LV       D  +  +   +L +L        Q+K  +L ++   +
Sbjct: 1331 LYKAVSLNSPYDIVLV-------DIQLPEMVAGSLERLRISEPAMQQTKWVVLTSTNQLA 1383

Query: 654  RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG------------VGNKGN-IRNWELPS 700
             A    +       + KP+++  L   L  A+               N+ + I N EL S
Sbjct: 1384 EAKRLVNS-GFSGYLTKPVKAHRLFDCLANAIAPMTLMDEPRANLTSNRASAIDNRELAS 1442

Query: 701  MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
            +         KIL+V+D  +N KV    L+  G        G +A  ++    ++D   M
Sbjct: 1443 L---------KILLVEDTPINQKVGLNQLRVLGCTADVANNGAEALSMV-ALKKYDIVLM 1492

Query: 761  DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
            D QMP +DG+EAT+            +RR E +  A     +    ++AMTA+ ++   E
Sbjct: 1493 DCQMPVLDGYEATR-----------ELRRREAADAAGNMEPHQKTVVIAMTANALKGDRE 1541

Query: 821  ECLRSGMDGYVSKPFEAEQL 840
            +CL +GMD Y+SKP   E+L
Sbjct: 1542 KCLAAGMDDYISKPISIEKL 1561


>gi|328951841|ref|YP_004369175.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
 gi|328452165|gb|AEB07994.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
          Length = 1121

 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 198/634 (31%), Positives = 299/634 (47%), Gaps = 117/634 (18%)

Query: 243  YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQ 302
            Y    E +  AEAA+ AKS FLAT+SHEIRTPMNGV+GM ++L+DT L+  Q+++  T +
Sbjct: 467  YAEASEARTAAEAANEAKSTFLATMSHEIRTPMNGVIGMTNLLLDTPLNEEQREFCETIR 526

Query: 303  ASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 362
             SG+AL+++IN++LD +K+E+GK+ELE   F+LR  L+  L L    +Q KG+EL  ++ 
Sbjct: 527  GSGEALLTIINDILDFSKIEAGKMELEHQPFDLRECLESALDLIVTPAQQKGLELVYHVD 586

Query: 363  DRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNT 422
             +VP T+ GD  R RQI+ NL+ N++KFTE+G I +TV                      
Sbjct: 587  KQVPATIAGDVTRLRQILLNLLNNAVKFTEQGEISLTVR--------------------- 625

Query: 423  LSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 482
                                +DG  +      + L+    SV D+G GIP +  +R+F  
Sbjct: 626  -------------------GEDGPDAAALPPGSMLLRF--SVADSGIGIPPDRLNRMFQS 664

Query: 483  FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS--IPNIGSTFTF---TAVFGNGS 537
            F Q+  S +R +GGTG+GL+ISK L   M G +   S  +P  GSTF     T       
Sbjct: 665  FSQIDASTTRKYGGTGLGLAISKRLSEMMGGRLWVESKGVPGKGSTFHLLIRTEPVAMPV 724

Query: 538  STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
             T +E     ++ QP     +  G + L VD      ++     Q  G+ V       + 
Sbjct: 725  ITRHEL----LHRQP-----QLAGKRLLAVDDNDTNRRILVLQSQSWGMLVRDSRSPQEA 775

Query: 598  LSQIASGSKI-----------INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 646
            L  I  G              +N +++ +E+     ++  +  ++   LGC         
Sbjct: 776  LGWIKRGDPFDLAILDMQMPDMNGLMLGREIRAHRPNLPLVLYSS---LGC--------- 823

Query: 647  ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL------QRAMGVGNKGNIRNWELPS 700
                         D       + KP++ S L  +L      Q A    +   +++   P 
Sbjct: 824  --------REVGPDAALFAFQLTKPIKPSQLYDALLTIFSAQPAATRKHDEAVKSQIDPD 875

Query: 701  MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
            ++ R   L  KIL+ +DN VN KVA   L R G     V  G +A E +     +D   M
Sbjct: 876  LATR---LPLKILLAEDNAVNQKVALRLLARLGYRADVVANGLEALEAVR-RQSYDVVLM 931

Query: 761  DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
            D+QMPEMDG EA++           RI+ GE    A          I+A+TAD +Q   E
Sbjct: 932  DVQMPEMDGLEASR-----------RIKLGEAGRAAPR--------IIALTADAMQGDRE 972

Query: 821  ECLRSGMDGYVSKPFEAEQLYREVSRFFP-PIPD 853
            +CL +GMD Y++KP + E L   ++R  P P P+
Sbjct: 973  KCLAAGMDDYLTKPIKVEALVDALTRTQPQPAPE 1006


>gi|258514836|ref|YP_003191058.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
            DSM 771]
 gi|257778541|gb|ACV62435.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
            DSM 771]
          Length = 1267

 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 187/640 (29%), Positives = 310/640 (48%), Gaps = 95/640 (14%)

Query: 233  VNRIAKVEEDY-------HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 285
            V RIA V  D          + E K++AE +   KS+FLA +SHEIRTPMNG++G   +L
Sbjct: 477  VVRIAGVASDVTVRKKLEQALTEAKEEAEYSARVKSEFLANMSHEIRTPMNGIIGFCHLL 536

Query: 286  MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 345
            M T+L+  Q +Y+   ++  + L+ +IN++LD +K+E+GK+ +E V FNL  ++ D+  L
Sbjct: 537  MQTQLNSKQLNYLTKIRSQSQHLLGIINDILDFSKLEAGKMSVEHVDFNLEEVIADLFYL 596

Query: 346  FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 405
               ++  KG+EL   +   VP  L GDP R +Q++ NL  N+IKF+++G+IF+ V  +++
Sbjct: 597  LENQASQKGLELLANVQKGVPAHLKGDPLRLKQVLVNLANNAIKFSDQGNIFLRVEKIDQ 656

Query: 406  VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 465
                                                           S +D + +  SVE
Sbjct: 657  ---------------------------------------------SDSDSDQVIISFSVE 671

Query: 466  DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 525
            D G G+  E   R+F  F Q   S +R +GGTG+GL+ISKYLV  M GEI   S   +GS
Sbjct: 672  DNGIGLTEEQMQRLFNSFSQADSSTTRKYGGTGLGLAISKYLVELMGGEISVSSEYGVGS 731

Query: 526  TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
            TF+F+  FG  +S        Q N + N    + +G + L+VD      ++   ++  L 
Sbjct: 732  TFSFSLPFGILAS------GIQTNQRDN---IDLKGSRVLIVDDNEASQEILASYLVDLN 782

Query: 586  IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 645
              V V+S   + +  +    +  ++++++ ++   D   +   +    KL    +  + +
Sbjct: 783  FDVTVLSSGQEAIDLLVKEGEAFDILVIDWKMPGLDGVETIRLIKEKMKLE---KIPIII 839

Query: 646  LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL-R 704
            +A++            + I + + KP   S L  ++  A  V +    R  +L   SL  
Sbjct: 840  MASAYDLDELRNVFSELGIKAFLNKPHTPSQLMDAITMAY-VESDSYYRPQDLKENSLFT 898

Query: 705  HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 764
              L G  IL+V+DN +N  VA   L+  G +V   E G++A E +   + +D   MD+QM
Sbjct: 899  GKLEGNHILLVEDNLINQMVAVEILESVGISVDVAENGREAVEKVRAGN-YDLVLMDLQM 957

Query: 765  PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 824
            P MDG EAT+I+R+        + R               +PI+A+TA  I    E+C+ 
Sbjct: 958  PVMDGMEATRILRD------EPLYR--------------DLPIIALTAHAISGFREQCIG 997

Query: 825  SGMDGYVSKPFEAEQLYREVSRFFPP--------IPDRSP 856
             GM+ ++SKPF  E +   +S+            IP+++P
Sbjct: 998  LGMNDFISKPFLPEDMLLILSKCLTSRTKESDRIIPEKTP 1037


>gi|262274200|ref|ZP_06052012.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
 gi|262222010|gb|EEY73323.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
          Length = 1343

 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 189/610 (30%), Positives = 299/610 (49%), Gaps = 84/610 (13%)

Query: 233  VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 292
            V +  ++E D   ++  K +A  A  AK +FLA +SHEIRTPMN +LGM  + + T+L+ 
Sbjct: 572  VTKQKRLESD---LIAAKDQATEASKAKGEFLANMSHEIRTPMNAILGMSHLALLTDLND 628

Query: 293  TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 352
             Q++YV   + +GK+L+ +IN++LD +K+E+GKL +E V F    +LD++ ++ S K+++
Sbjct: 629  KQRNYVGNIEKAGKSLLGIINDILDFSKIEAGKLSVEHVDFRFSEVLDNISNIISVKAKE 688

Query: 353  KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 412
            K +EL   I   +P+ L+GDP R  QII NL GNS+KFTE G I +    V +V + IE+
Sbjct: 689  KELELIFDIDPNLPDDLVGDPLRLGQIIINLTGNSVKFTESGEIIIRARKVTDVNEIIEI 748

Query: 413  ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 472
            + +                                                +EDTG G+ 
Sbjct: 749  QFD------------------------------------------------IEDTGIGMN 760

Query: 473  LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532
             E   R+F  F Q   SI+R +GGTG+GL+ISK  V  M G I   S P  GSTF+FT  
Sbjct: 761  EEQLGRLFQSFSQADGSITRKYGGTGLGLTISKSFVELMGGRIWVESQPGKGSTFSFTIR 820

Query: 533  FGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 592
             G  +S+  E  ++         ++     + LVVD       +    +  L ++V  VS
Sbjct: 821  CGRSNSSIKEQIAK---------TTILNDKRVLVVDDNQASRDIMYALLDNLDLRVAAVS 871

Query: 593  DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL-ANSIS 651
            +  + + ++ S     +   V    W+            +R+L      K+ L  A   +
Sbjct: 872  NGEEAVYEVESADLSNDGFDVVVMDWKMPGINGDEATVKIRELSLNKMPKVILASAYGEN 931

Query: 652  SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL-LLGR 710
            S   N     V   S++ KP+  S L  +L  A G        + E  ++  +H+ L G 
Sbjct: 932  SGLINEEVQNVFDASLV-KPINPSSLFDALMEAFGQLEMKRANSREAETIKTQHVDLTGI 990

Query: 711  KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            KIL+V+DN +N +VA   L+++   +   + G+ A + +   H FD   MD+QMP MDG 
Sbjct: 991  KILLVEDNMINQEVAKGILEQFNPTIEVADNGQVALDRVQKEH-FDIVLMDMQMPVMDGL 1049

Query: 771  EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
             AT+ IRE               IEA        +PI+AMTA+ ++   ++C  +GM+ +
Sbjct: 1050 TATRKIRE---------------IEALAG-----LPIVAMTANAMERDIKQCKAAGMNDH 1089

Query: 831  VSKPFEAEQL 840
            VSKP + E+L
Sbjct: 1090 VSKPIDIEEL 1099


>gi|91791902|ref|YP_561553.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
            OS217]
 gi|91713904|gb|ABE53830.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans OS217]
          Length = 1233

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 193/662 (29%), Positives = 312/662 (47%), Gaps = 83/662 (12%)

Query: 186  LNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHG 245
            L   +P   +E   R + K+   L  +S    +   A  +      T   I + + +   
Sbjct: 648  LYLSEPSGAYETEFRMRTKSGRYLWVLSRGRVVEFTADGMPSRMLGTHKDITRQKSNEVA 707

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            ++E K  AE A++ KS+FLA +SHEIRTPMN ++GML +   T+L + QQDY+  A  S 
Sbjct: 708  LLEAKHDAELANMYKSEFLANMSHEIRTPMNAIIGMLQLASRTQLTLQQQDYLNKAGFSA 767

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            ++L+ +IN++LD +K+E+GKLELE+V F+L  +LD V+ + +  +Q+KGVEL ++     
Sbjct: 768  ESLLRIINDILDFSKIEAGKLELESVPFSLEKVLDHVIDMNALSAQEKGVELLLFSPLTT 827

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
              TL GDP R  Q++ NL+ N++KFT+ G               IE+  E    ++T   
Sbjct: 828  GLTLKGDPLRLGQVLVNLLSNAVKFTQDGE--------------IELGCEDVGERDT--- 870

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                            I+L   V DTG GI  E Q+ +F  F Q
Sbjct: 871  -------------------------------QISLKFWVRDTGIGISREQQANLFDAFSQ 899

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               S +R +GGTG+GLSISK+LV  M G +   S P  GSTF+FT  F           +
Sbjct: 900  ADGSTTRQYGGTGLGLSISKHLVSMMGGNLSVESEPQQGSTFSFTLSFD---------IA 950

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
            +++  QP  V  +   + +LVVD  P   ++    ++     V   +   + + ++    
Sbjct: 951  KELPQQPLVVPKQLNNLTSLVVDDNPSALQIYSTLLRDFSFGVNTATGGAEAIERLLQQD 1010

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
              + ++     V      +    V+ +   G   +  + ++  + S+   N   D     
Sbjct: 1011 IDLLLLDWMMPVVSGGMVIKA--VDEMIADGRLKKRPVIIIMTAYSTEPLNLELDKYEYQ 1068

Query: 666  SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 725
            +V+ KP ++S L   +  A     K  I+  E+        L    IL+V+DN +N +VA
Sbjct: 1069 AVLQKPFKASSLFDEIIGAFAAPAK--IKQ-EIAEQVEPQPLQSGLILLVEDNFINQQVA 1125

Query: 726  AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785
            +  LK  G  VV  + G+ A +L+    +FDA  MDIQMP MDG  A KI+R        
Sbjct: 1126 SELLKSAGYDVVIADNGQIALDLV-AKQEFDAVLMDIQMPVMDGLTAAKILR-------- 1176

Query: 786  RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 845
                        E  S   +PI+AMTA  +    E+ L +GM+ +++KP    +L+  ++
Sbjct: 1177 ------------ETYSTQQLPIIAMTAHAMSGDKEKSLNAGMNAHITKPIVLTELFETLA 1224

Query: 846  RF 847
             +
Sbjct: 1225 YW 1226


>gi|229515723|ref|ZP_04405182.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
 gi|229347492|gb|EEO12452.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
          Length = 1331

 Score =  257 bits (657), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 298/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N      + R    G+ +L+V+DN
Sbjct: 947  L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGISATEHIRA 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1060 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVSD 1113


>gi|113969059|ref|YP_732852.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883743|gb|ABI37795.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1767

 Score =  257 bits (657), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 180/600 (30%), Positives = 298/600 (49%), Gaps = 89/600 (14%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++A+AA  AK  FLA +SHEIRTPMN ++GM  + + TELD  Q++YV   + + K+L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASKSLL 1089

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            S+IN++LD +K+E+GKL++E+V F L  +L+D+  +FS K+  K +EL   ++  VP  L
Sbjct: 1090 SIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPNVPRHL 1149

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GD  R  Q++ NLM N+IKFTE+G + +++ LVE+  D + +   +  S   L+    A
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQNDDVVLRFSVRDSGIGLTAEQQA 1209

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                  K FK+F+Q                      DT                     S
Sbjct: 1210 ------KLFKSFSQ---------------------ADT---------------------S 1221

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+I K LV  M G IG  S    GSTF FT               Q  +
Sbjct: 1222 TTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYFTVKL------------QISS 1269

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             Q  +V+ E +GM  LV D       + R  ++ +G +V+ V    + +++ +     + 
Sbjct: 1270 GQKLTVAQELEGMSILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVTRCSQQEYAVA 1329

Query: 610  MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
            +I      W+            +++L     +   L+ ++ ++    +  + + +   I 
Sbjct: 1330 LI-----DWKMPNLDGIETAKQIKQLAKN--APRILMVSAHATQEFLSQIEALGLAGYIS 1382

Query: 670  KPLRSSMLAASLQRAMG-VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
            KP+ +S L   +  ++G  G     RN E     L   L G++IL+V+DN +NL+VA   
Sbjct: 1383 KPISASRLLDGIMNSLGRAGVLPVRRNSESIDPKLLLPLKGKRILLVEDNEMNLEVATEF 1442

Query: 729  LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
            L++ G  +     G+ A + L     FD   MD QMP MDG++AT+ IR          +
Sbjct: 1443 LEQVGIILSIATNGQIALDKL-AQQSFDLVLMDCQMPVMDGYQATQAIR----------K 1491

Query: 789  RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            R E++           +P++AMTA+ +    E CL++GM+ +++KP E   LY+ + ++ 
Sbjct: 1492 RPELA----------ELPVIAMTANAMAGDKEMCLKAGMNDHIAKPIEVNLLYQTLLKYL 1541


>gi|410724256|ref|ZP_11363454.1| signal transduction histidine kinase [Clostridium sp. Maddingley
           MBC34-26]
 gi|410602261|gb|EKQ56742.1| signal transduction histidine kinase [Clostridium sp. Maddingley
           MBC34-26]
          Length = 706

 Score =  257 bits (657), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 181/624 (29%), Positives = 302/624 (48%), Gaps = 88/624 (14%)

Query: 236 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 295
           +A V+++   +++ K+ AEAA +AKS+FLA++SHEIR P+NG++GM +++  T L+  Q+
Sbjct: 39  LATVDDENSKLLKEKEAAEAASLAKSEFLASMSHEIRNPLNGIIGMTELISSTNLNEEQR 98

Query: 296 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 355
           +Y+   + SG++L+ +IN++LD +K+E+GK++++   FN+  +++  +  F   + +K +
Sbjct: 99  EYIDLLKISGESLLRIINDILDFSKIEAGKIQIKEDKFNIENMVNKTIKSFYHHATEKKI 158

Query: 356 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415
           +L   I   +P+ LIGD  R  Q++ NL+GN+IKFT KG I V V  V++          
Sbjct: 159 KLKYEIDKSIPKVLIGDQFRINQVLVNLIGNAIKFTNKGSISVLVTKVDQT--------- 209

Query: 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 475
                                              K  S  L N+I    DTG GI    
Sbjct: 210 -----------------------------------KKRSIILFNVI----DTGIGIEESK 230

Query: 476 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535
              +F  F Q+    S+ + GTG+GL+ISK LV  M GEIG  S    GS F FT     
Sbjct: 231 LKLLFHRFTQLEDIYSKKYSGTGLGLAISKKLVELMGGEIGVKSKVGEGSKFYFTVKLDL 290

Query: 536 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 595
             +    H  +           +   +K LV+       +  R  ++ L ++V+ +S   
Sbjct: 291 PKTIKQRHLEE--------YQRKISDLKVLVITRDEEIKRQVREKLEELKLKVKYISTGQ 342

Query: 596 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 655
           + ++ +   S++  +I +       + S    F+  LRK+    Q K+  L         
Sbjct: 343 EAIALLKQRSRLDKIIDIVIVDTIIEDSDCMTFIERLRKIEDIEQPKVVCLT---PIGIE 399

Query: 656 NTSTDGV--SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL------- 706
           N    G+  +I + + KP+    L   L + +   N+ N  N+   S   ++L       
Sbjct: 400 NNLRVGIRLNISAFLYKPIDKFQLYEVLMKILNEKNQ-NKYNFTDNSEETQYLEDKDPIV 458

Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
           L   KIL+V+D+ +N K+    LK+ G  V+    GK+A   L    + D   MD+Q+PE
Sbjct: 459 LSNVKILLVEDSVINQKLVENILKKQGCQVITANNGKEALNTL-KDTKVDLILMDVQLPE 517

Query: 767 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG 826
            +G E TK+IRE EH                   +N H+PI+A+TA  +    E+CL +G
Sbjct: 518 TNGMEVTKVIRESEH------------------YTNEHIPIIALTAFALNGDKEKCLSAG 559

Query: 827 MDGYVSKPFEAEQLYREVSRFFPP 850
           MD YV+KP    +L++E+ +  P 
Sbjct: 560 MDSYVTKPINKNELFKEIEKLLPK 583


>gi|424591352|ref|ZP_18030781.1| sensory box protein [Vibrio cholerae CP1037(10)]
 gi|408031892|gb|EKG68493.1| sensory box protein [Vibrio cholerae CP1037(10)]
          Length = 1331

 Score =  257 bits (657), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 298/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N      + R    G+ +L+V+DN
Sbjct: 947  L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIRA 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1060 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVSD 1113


>gi|229523546|ref|ZP_04412951.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426]
 gi|229337127|gb|EEO02144.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426]
          Length = 1342

 Score =  257 bits (657), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 298/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 603  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 662

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 663  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 722

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 723  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 771

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 772  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 794

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 795  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 852

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 853  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 902

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 903  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 957

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N      + R    G+ +L+V+DN
Sbjct: 958  L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1011

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1012 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIRA 1070

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1071 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1110

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1111 KFY-QVLRHFLQVSD 1124


>gi|262192397|ref|ZP_06050550.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae CT 5369-93]
 gi|262031750|gb|EEY50335.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae CT 5369-93]
          Length = 1331

 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 298/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N      + R    G+ +L+V+DN
Sbjct: 947  L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIRA 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1060 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVGD 1113


>gi|23016213|ref|ZP_00055971.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 788

 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 178/608 (29%), Positives = 295/608 (48%), Gaps = 92/608 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K+ AE A  AKS FLA +SHEIRTPMN ++GM  + + T+LD  Q++Y+     SG+ L+
Sbjct: 47  KEIAEEATKAKSDFLANMSHEIRTPMNAIIGMSHLALQTKLDKKQRNYIEKVHRSGENLL 106

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +IN++LD +K+E+GK+ +E++ F L  ++D++ +L   K++D+G+EL   ++  +P  L
Sbjct: 107 GIINDILDFSKIEAGKMTMESIDFRLEDVMDNLANLVGLKAEDRGLELLFNVAPDIPSAL 166

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R  QI+ NL  N++KFTEKG I V   LVE   D  E+                 
Sbjct: 167 IGDPLRLGQILINLGNNAVKFTEKGEIIVGAELVERSEDQAEL----------------- 209

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
              H W                            V D+G G+  E   ++F  F Q   S
Sbjct: 210 ---HFW----------------------------VRDSGIGMTPEQCGKMFKSFSQADTS 238

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R +GGTG+GL+ISK LV  M G I   S    GSTF F    G  S     H   +  
Sbjct: 239 TTRKYGGTGLGLAISKTLVELMDGRIWVESEAGKGSTFHFHVRVGVQS-----HPPLRRV 293

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI-- 607
             P+    E  G++ LVVD      ++     +  G++V+   D  Q L  +A+  +   
Sbjct: 294 FSPD----ELLGLRVLVVDDNAAAREILSAMAKGFGLEVDSAWDGTQALEMVAAAERKDL 349

Query: 608 -INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK----LFLLANSISSSRANTSTDGV 662
             ++IL++ ++   D       V  ++KL  G  ++    + + A     +  N    GV
Sbjct: 350 PYDLILMDWKMPIMDG------VETVQKLQHGDHARIPAVIMVTAYGREEAATNAEERGV 403

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNV 720
            + +V+ KP+ ++ L  ++   +G G     +  +        +  L G ++L+V+DN +
Sbjct: 404 VMKTVLTKPVTAASLLEAIGETLGKGVVAEHQGQDKAESYKETMKALEGCRVLLVEDNEM 463

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           N ++A   L + G  VV    G+ A ++L   ++FD   MD QMP MDG+ AT+ IR   
Sbjct: 464 NQELATELLSQAGMEVVVAVHGQDALDILARDNRFDGILMDCQMPVMDGYTATRAIR--- 520

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                             N +   +P++AMTA+ +    E+ + +GM  +++KP   E +
Sbjct: 521 -----------------ANPALSAIPVIAMTANAMAGDREKVMEAGMLDHIAKPLNLETM 563

Query: 841 YREVSRFF 848
           +  ++++ 
Sbjct: 564 FSTMAKWI 571


>gi|254283237|ref|ZP_04958205.1| PAS fold family protein [gamma proteobacterium NOR51-B]
 gi|219679440|gb|EED35789.1| PAS fold family protein [gamma proteobacterium NOR51-B]
          Length = 1947

 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 181/623 (29%), Positives = 294/623 (47%), Gaps = 97/623 (15%)

Query: 236  IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 295
            ++ V E  H M    + A+ A+ AKS FLA +SHEIRTPMN ++GM  + + T+L   Q+
Sbjct: 1198 LSDVTELNHAM----EIADDANQAKSDFLANMSHEIRTPMNAIIGMSHLALQTDLTSKQR 1253

Query: 296  DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 355
            +Y+     S ++L+ +IN++LD +K+E+GKL++EAV F L  ++D+++SL   K++D G+
Sbjct: 1254 NYIEKVHRSAESLLGIINDILDFSKIEAGKLDIEAVDFRLDDVMDNLVSLVGLKAEDHGL 1313

Query: 356  ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415
            EL + +   +P  LIGDP R  QI+ NL  N++K                          
Sbjct: 1314 ELLLDVPPDLPTALIGDPLRLSQILINLGNNAVK-------------------------- 1347

Query: 416  LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKS----SSADLINLIVSVEDTGQGI 471
                                     F +DG           S+A+ + +  SV D+G G+
Sbjct: 1348 -------------------------FTEDGEVVVAVRVEEESNAE-VRMHFSVRDSGIGM 1381

Query: 472  PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 531
              E QSR+F  F Q   S +R +GGTG+GL+ISK LV  M GEI   S P +GS F FTA
Sbjct: 1382 NKEQQSRLFQSFSQADSSTTRKYGGTGLGLAISKQLVAMMDGEIWVESEPGVGSDFQFTA 1441

Query: 532  VFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 591
             F            Q    +P     +   +  LVVD      ++    ++ LG Q++  
Sbjct: 1442 CF---------EKQQGEIPEPTVAPDDLGPLPILVVDDNQSAREILAAILESLGFQIKTA 1492

Query: 592  SDQLQCLSQI--ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 649
            S   Q +  I  A   +   +++++  +   D   +   +     L    Q K+ ++  +
Sbjct: 1493 SGGRQAVEMIKAADADEPFKLVMLDWRMPGLDGVQTGQLIQEDTTLKN--QPKIIMI-TA 1549

Query: 650  ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM--SLRHLL 707
                       G++I   + KP  +S L   + RAMG     N R  +           L
Sbjct: 1550 FGREEMQEGAGGLAISGFLTKPATASSLLDEIMRAMGREVAENPRGGDRKQAVKEFAAEL 1609

Query: 708  LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
             G ++L+V+DN +N ++A   L  +G  V     G++A +L+   HQFD   MD QMP M
Sbjct: 1610 RGAQVLLVEDNEINQELAVEILTTHGMTVQVANNGQEALDLIA-AHQFDGVLMDCQMPVM 1668

Query: 768  DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
            DG+EAT+ IR                     N +   +P+LAMTA+ +    E+ + +GM
Sbjct: 1669 DGYEATRHIR--------------------NNPATKDLPVLAMTANAMVGDKEKVIEAGM 1708

Query: 828  DGYVSKPFEAEQLYREVSRFFPP 850
            + +++KP     L++ ++++  P
Sbjct: 1709 NDHIAKPINLADLFKTMAKWISP 1731


>gi|254286552|ref|ZP_04961508.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae AM-19226]
 gi|150423310|gb|EDN15255.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae AM-19226]
          Length = 1331

 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 195/615 (31%), Positives = 296/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N      + R    G+ +L+V+DN
Sbjct: 947  L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIR- 1058

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                                N     +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1059 -------------------ANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVSD 1113


>gi|424660224|ref|ZP_18097471.1| sensory box protein [Vibrio cholerae HE-16]
 gi|408050909|gb|EKG86037.1| sensory box protein [Vibrio cholerae HE-16]
          Length = 1331

 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 195/615 (31%), Positives = 299/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T+LD TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDTTQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGEGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGYMKSFLVTAYGREINLEGENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N      + R    G+ +L+V+DN
Sbjct: 947  L----VDALIVKPVNPSNLLDAIMTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A + L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALDRL-EHADFDLVLMDMQMPVMDGVTATEYIRA 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1060 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNEHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVSD 1113


>gi|359688370|ref|ZP_09258371.1| multi-sensor hybrid histidine kinase [Leptospira licerasiae serovar
           Varillal str. MMD0835]
 gi|418748435|ref|ZP_13304727.1| PAS domain S-box protein [Leptospira licerasiae str. MMD4847]
 gi|418756108|ref|ZP_13312296.1| PAS domain S-box protein [Leptospira licerasiae serovar Varillal
           str. VAR 010]
 gi|384115779|gb|EIE02036.1| PAS domain S-box protein [Leptospira licerasiae serovar Varillal
           str. VAR 010]
 gi|404275504|gb|EJZ42818.1| PAS domain S-box protein [Leptospira licerasiae str. MMD4847]
          Length = 864

 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 191/618 (30%), Positives = 305/618 (49%), Gaps = 111/618 (17%)

Query: 239 VEEDY-HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           V ++Y H + + K++AE A+ AKS+FLA +SHEIRTPMNGV+GM ++L+D+ L+  Q++Y
Sbjct: 325 VRKNYEHDLKKAKEEAEKANRAKSEFLAMMSHEIRTPMNGVIGMTELLIDSNLNTEQKEY 384

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
               Q SG++L+++IN++LD +K+ESG L LE   F++   +++VL LF  ++  K ++L
Sbjct: 385 AEIIQKSGESLLNIINDILDYSKIESGTLSLEIREFSVIETIEEVLDLFRSRAAQKQIDL 444

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
             Y+   VP+ ++ D  R +QI+ NL+GN++KFTE+G IF                  LS
Sbjct: 445 VYYLDPNVPDRILCDSLRLKQILINLIGNALKFTEQGEIF------------------LS 486

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
           +  + L G                               L  ++ S+ DTG GIP E Q 
Sbjct: 487 AEVSKLEG------------------------------KLYTILFSIRDTGIGIPSEKQK 516

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-TAVFGNG 536
            +F PF QV  S +R +GGTG+GLSIS  L+  M G I   S  N+G+TF+F   V GN 
Sbjct: 517 ELFQPFYQVDTSSTRKYGGTGLGLSISSRLIEMMGGIIWVESELNVGTTFSFYIQVEGNN 576

Query: 537 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
            +   E           + +SE +  K L++D  P   K+  Y +Q LG           
Sbjct: 577 QAKIKEK----------AANSELENKKVLILDDNPTNLKILAYQLQILG----------- 615

Query: 597 CLSQIASGSKIINMILVEQEV--------WEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 648
            L   ++ SK   + L++ E+        +    S        +RK    F   L LL++
Sbjct: 616 -LITFSAKSKEEALNLLDLEIMPDLGILDYNLPGSTGIEIAQEMRK--RNFHFPLVLLSS 672

Query: 649 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN---KGNIRNWELPSMSLRH 705
           S    + +    G      + KP++   +   +   +  G    K N R+  L     + 
Sbjct: 673 SFLDPK-DKEIAGELFAGELSKPVKKKDIERIVTEILAEGGSKAKANTRSSYLAGQ--KE 729

Query: 706 LLLGR---KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 762
           +L  +   KI++ +DN +N  +A   +++ G   + V  GK+A  + +   + +  FMD+
Sbjct: 730 ILSSQFPFKIMVAEDNEINQTLAKRIIQKLGYEPLIVPNGKEAL-IALREKKINLIFMDV 788

Query: 763 QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 822
            MPEMDG +AT++IR              V  + Y         I+AMTA  +Q   + C
Sbjct: 789 HMPEMDGLQATQVIR----------NTWSVESQPY---------IIAMTAAAMQGDRDLC 829

Query: 823 LRSGMDGYVSKPFEAEQL 840
           LR+GM+ Y+SKP   E+L
Sbjct: 830 LRAGMNDYISKPIVFEEL 847



 Score = 42.4 bits (98), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 22/142 (15%)

Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
           L  +K+LI+DDN  NLK+ A  L+  G      +  ++A  LL      D   +D  +P 
Sbjct: 589 LENKKVLILDDNPTNLKILAYQLQILGLITFSAKSKEEALNLLDLEIMPDLGILDYNLPG 648

Query: 767 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG 826
             G E  + +R+                       NFH P++ +++  +    +E     
Sbjct: 649 STGIEIAQEMRK----------------------RNFHFPLVLLSSSFLDPKDKEIAGEL 686

Query: 827 MDGYVSKPFEAEQLYREVSRFF 848
             G +SKP + + + R V+   
Sbjct: 687 FAGELSKPVKKKDIERIVTEIL 708


>gi|422910139|ref|ZP_16944781.1| sensory box protein [Vibrio cholerae HE-09]
 gi|341633891|gb|EGS58672.1| sensory box protein [Vibrio cholerae HE-09]
          Length = 1331

 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 195/615 (31%), Positives = 300/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T+LD TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDTTQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +            +L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------GQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +  + +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLNDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGEGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N      + R   +G+ +L+V+DN
Sbjct: 947  L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFVGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A + L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALDRL-EHADFDLVLMDMQMPVMDGVTATEYIRA 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1060 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNEHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVSD 1113


>gi|334133034|ref|ZP_08506789.1| Putative sensor protein gacS [Methyloversatilis universalis FAM5]
 gi|333441944|gb|EGK69916.1| Putative sensor protein gacS [Methyloversatilis universalis FAM5]
          Length = 916

 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 192/609 (31%), Positives = 287/609 (47%), Gaps = 96/609 (15%)

Query: 237 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 296
           ++VE     + E K++AE+A+ AKS+FLA +SHEIRTPMNGV+GM  +L  T LD  Q+ 
Sbjct: 256 SEVEARTRELREAKEQAESANQAKSRFLANMSHEIRTPMNGVIGMAGLLERTPLDERQRR 315

Query: 297 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 356
           Y+     S ++L+ +IN+VLD +K+E+GKL+ E V F  + + +DV+ LF+  ++ KG+E
Sbjct: 316 YLDAISGSAESLLRVINDVLDFSKIEAGKLQFERVVFEPQQVFEDVVLLFADPARSKGIE 375

Query: 357 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 416
           L++ I+  +P  L+GDP R RQ++ NL+ N++KFT  G + V V  V             
Sbjct: 376 LSLRIAPSLPHGLVGDPHRLRQVLINLVSNALKFTAAGEVLVDVQAV------------- 422

Query: 417 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476
                 + G P       W                        L  +V DTG GI  +A 
Sbjct: 423 -----AVDGAP----AQVW------------------------LEAAVVDTGSGISADAA 449

Query: 477 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536
           +R+F  F Q   S +R  GGTG+GL+I++ L+    G + F S+P  GS F F+  F   
Sbjct: 450 ARVFDAFAQADSSTTRRFGGTGLGLAITRELITAQGGTLDFSSVPGYGSHFHFSLPFDRA 509

Query: 537 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSD 593
            + +           P   +   Q  +ALVVDP    A+     +   GI+    E  ++
Sbjct: 510 GTVA-----------PGLQAGGTQ--RALVVDPSLRSAQNLLTLLTDGGIECLHCETAAE 556

Query: 594 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 653
            +  L +        + +L  Q++ +         V   R L   F S   L+    S  
Sbjct: 557 AMMALMRGELCGLPFDTVLCAQQLADAGA------VELARMLAERFGSPPRLICMQGS-- 608

Query: 654 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 713
            A+     +S+P VI KP+    LA  L  A   G    +   E P+          K+L
Sbjct: 609 -ADPDLARISLP-VIRKPVLRGELALLLGDARRPGPASALTRIEAPAKP------SIKVL 660

Query: 714 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
           +V+D+ VN ++A   L   G  V   E G  A   +     FD   MD QMP MDGFEA+
Sbjct: 661 LVEDHPVNREIALDMLTELGCRVHAAENGLIALGAVS-REPFDLVLMDCQMPVMDGFEAS 719

Query: 774 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
           + IR +EH                   S   VPI+A+TA+ +    E CL +GMD Y+ K
Sbjct: 720 RRIRALEHEL-----------------SRPPVPIVALTANALSGDRERCLAAGMDDYLPK 762

Query: 834 PFEAEQLYR 842
           P    +L R
Sbjct: 763 PIPLRELAR 771


>gi|297578936|ref|ZP_06940864.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae RC385]
 gi|297536530|gb|EFH75363.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae RC385]
          Length = 1331

 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 298/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVSRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N      + R    G+ +L+V+DN
Sbjct: 947  L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIRA 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1060 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNEHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVSD 1113


>gi|348029065|ref|YP_004871751.1| PAS domain-containing protein [Glaciecola nitratireducens FR1064]
 gi|347946408|gb|AEP29758.1| PAS domain-containing protein [Glaciecola nitratireducens FR1064]
          Length = 1045

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 192/622 (30%), Positives = 308/622 (49%), Gaps = 97/622 (15%)

Query: 243 YHG-MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
           Y G M+   K A+ A  AKS+FLA +SHEIRTPMNGVLGM+D+L+DT L   Q   ++ A
Sbjct: 299 YEGAMLNATKAAQEASNAKSEFLARMSHEIRTPMNGVLGMIDLLLDTRLTSDQTHKLKVA 358

Query: 302 QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
           + S  +L+++IN++LD ++VE+G++E+E++ FNL   +++V    + +S  KG+EL V +
Sbjct: 359 KNSASSLLTIINDILDFSRVEAGRMEIESLDFNLPQQIENVAQTLAIRSDAKGIELIVDV 418

Query: 362 SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
           SD   + ++GD  R RQ++TNL+ N+IKFTE G I V                       
Sbjct: 419 SDIQQKMVVGDAVRLRQVLTNLISNAIKFTEVGQIVVRA--------------------- 457

Query: 422 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 481
                            KT NQ            D   L  SVEDTG GIP      +F 
Sbjct: 458 -----------------KTINQ-----------GDTTRLECSVEDTGIGIPDSKLEHLFE 489

Query: 482 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 541
            FMQV  S +R +GG+G+GL+I + L+  M G I   S  N G+ F+F            
Sbjct: 490 SFMQVDTSTTRVYGGSGLGLAICERLIELMGGRIQVSSSINKGTIFSFDINL-------- 541

Query: 542 EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
              +  + ++P +  S     + LVVD      ++    ++  G++  +  D    L ++
Sbjct: 542 --KTSLLEDKPQA-RSNIVDWQILVVDDNETNREILASQLENWGVKPILAIDAFDALDKL 598

Query: 602 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
            S    +++I+ +  +  KD       V +++ +      K+ +L+ S+S   +      
Sbjct: 599 NSAPLELDLIITDMNMPNKD---GLSLVADIKMIDRYKDIKILMLS-SMSFQMSVAEFGS 654

Query: 662 VSIPSVIMKPLRSSMLAASLQRAMGVGNK----GNIR----NWELPSMSLRHLLLGRKIL 713
           + + S +MKP+ SS L  ++  A+  G++     NI+    N +LP +         K+L
Sbjct: 655 LGLDSCLMKPVGSSELFNTI--ALMSGDESTASNNIKAVNANNQLPEIV--KWPSYHKVL 710

Query: 714 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP---HQFDACFMDIQMPEMDGF 770
           IV+DN+VN  VA   LK++G        G  A + L+       +    MD QMP +DG+
Sbjct: 711 IVEDNSVNQLVAEGLLKKFGLQYGVAIDGSIAIQTLIQSELDQPYTLILMDCQMPVLDGY 770

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
           +AT            +IR+G+   E Y+N     +PI+AMTA+ ++   E+CL+SGM+ Y
Sbjct: 771 KATA-----------KIRQGDAG-ERYKN-----IPIIAMTANAMKGDREKCLQSGMNDY 813

Query: 831 VSKPFEAEQLYREVSRFFPPIP 852
           V KP +   L + +   F   P
Sbjct: 814 VPKPIDVGVLQKALVSGFSLTP 835


>gi|117926671|ref|YP_867288.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
 gi|117610427|gb|ABK45882.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
          Length = 927

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 207/671 (30%), Positives = 314/671 (46%), Gaps = 105/671 (15%)

Query: 178 DGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHI--FQATVNR 235
           D LW   +++ G  +R   +  R      W +  IS      V++   G I  F      
Sbjct: 333 DALW--DSISRGHEWRGELINKRKDGSLYWEMAHISP-----VLSKTSGKITHFVGIKED 385

Query: 236 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 295
           I  ++E    +   +KKAEAA +AKS+FLAT+SHEIRTPMN +LGM ++L +T+L + Q+
Sbjct: 386 ITSLKETEAHLELTQKKAEAASLAKSEFLATMSHEIRTPMNAILGMTELLGETQLSIEQR 445

Query: 296 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 355
            ++   +++G+ L+ +IN++LD +KVESG LEL+ V FNLR I+ D   +   +S +KG+
Sbjct: 446 GFLSVCRSAGENLLQIINDILDISKVESGGLELQHVPFNLRRIVYDAGEVIRFRSHEKGL 505

Query: 356 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415
              ++I + VPE L+GDP R RQI+ N +GN+IKFTE G I   V               
Sbjct: 506 HQLIFIDESVPEWLLGDPARIRQILINFLGNAIKFTEAGTIATVV--------------- 550

Query: 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 475
                                         ST+  K S  +++  ++   DTG GIP   
Sbjct: 551 ------------------------------STTAGKGSQVEIVFRVI---DTGIGIPESK 577

Query: 476 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535
           QS +F  F Q+  S  R +GGTG+GL+ISK L   M G++G  S    GSTFT +     
Sbjct: 578 QSVVFDAFKQLDSSTQRRYGGTGLGLTISKKLADLMGGQLGLKSQEGHGSTFTLSLRLSR 637

Query: 536 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ- 594
            +  S        + QP  +   F GM  L+    PI+       + R G  +   S+  
Sbjct: 638 STGPSKS------SAQPAPI---FAGMHILIWHTHPIKRMNIEETLIRYGATLHHCSEVD 688

Query: 595 --LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 652
             L+C +Q    +  I+++ +  +  + D       +  LR +    +  + +       
Sbjct: 689 PFLRC-AQANHAATPIDLLFIHFDHADVDVLSE---IKRLRAVSPWEKIPVLIYGRCHDR 744

Query: 653 S-RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLLGR 710
           S  A     GV+    + +P+   +L   L R      +  + +   PS  SLR      
Sbjct: 745 SLPAKMLQQGVNF---LPEPVFPDVLLDELCRITQKSQQPEVDS--KPSRASLR------ 793

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATE-LLMPPHQFDACFMDIQMPEMDG 769
            +L+VDD+  NL +A+  LK     V     GK+A E       +FD   MDIQMPEMDG
Sbjct: 794 -VLLVDDSEDNLLLASTFLKSTPHIVQTATNGKQAVERFTQTSPRFDLILMDIQMPEMDG 852

Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
           F+AT  IR  E              +A++       PI+A+TA  +     +CL +G  G
Sbjct: 853 FQATAAIRAWE--------------KAHKKPP---CPIIALTAFAMSDDESKCLSAGFTG 895

Query: 830 YVSKPFEAEQL 840
           YVSKP    +L
Sbjct: 896 YVSKPISKARL 906



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 57/145 (39%), Gaps = 28/145 (19%)

Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
           L+  KILIVDD   N       L +    ++    G  A  L M  H F    +D+ MP 
Sbjct: 3   LIEPKILIVDDRPANSMALRVSLSKLDVQIIEAPSGNDALGL-MVEHDFALMLLDVNMPG 61

Query: 767 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQATYEEC 822
           MDG+E  KI R  E   +                    +PI+ MTA    D  +AT  + 
Sbjct: 62  MDGYEVAKIARSWEQTKD--------------------IPIIFMTAIHHDDAHRATGYQL 101

Query: 823 LRSGMDGYVSKPFEAEQLYREVSRF 847
              G   Y+ KP +   L  +V  F
Sbjct: 102 ---GAADYIDKPVDTTILLSKVKVF 123


>gi|88858180|ref|ZP_01132822.1| sensor protein barA [Pseudoalteromonas tunicata D2]
 gi|88819797|gb|EAR29610.1| sensor protein barA [Pseudoalteromonas tunicata D2]
          Length = 925

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 181/600 (30%), Positives = 285/600 (47%), Gaps = 91/600 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A+  KS FLA +SHE+RTP+NGV+G    L  T L+  Q+DY+ T + S  +L+
Sbjct: 279 KKEAQDANRVKSDFLAKMSHELRTPLNGVVGFTRQLYKTPLNKHQKDYLDTIELSANSLL 338

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+E+G +ELE++ F LR  +++VL+L +  + DK +EL++ I D VP++L
Sbjct: 339 AIINDILDFSKLEAGAMELESIHFQLRDTVNEVLTLLAPSAHDKNLELSINIHDNVPDSL 398

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP RF+QI+ NL+ N+IKFTE GH+ + V                             
Sbjct: 399 IGDPTRFKQILINLISNAIKFTESGHVLIDV----------------------------- 429

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
             C  +   +T                  ++ V++ D+G GI    Q  +F+ F Q   S
Sbjct: 430 -DCRHYANQRT------------------SIFVAINDSGIGISANKQDALFSAFGQADSS 470

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           I+R  GGTG+GL I+K+LV  M G I   S    GS FTF A F         H S  + 
Sbjct: 471 ITRKFGGTGLGLIITKHLVEAMGGHISLNSAVGKGSCFTFNAFF----EQPKRHYSDNLP 526

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             P       +  + L  +      + ++  +Q   + V      L  L Q  +G    +
Sbjct: 527 TTP------LEQKRVLYFETHHHTHEATQSLLQSWNMHVTACL-SLAELEQALTGEFSFD 579

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
           + ++       + S     VN +R   C +   L+L+ N++S +       G    + + 
Sbjct: 580 IAILGHAASLDNMSEIKSLVNRVRP-QCDY---LYLMVNTVSHNMREAFI-GTGADACLS 634

Query: 670 KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 729
           KPL    L  SL     + +     + + P  + R  +L  K+L+VDDN+ NLK+    L
Sbjct: 635 KPLNHRKLCESLAAPYRLDHP----SIQTPEQAQR--ILPIKVLVVDDNDANLKLMCTLL 688

Query: 730 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789
                 +     G +A   L   H++D  F+DIQMP MDG  A K+I             
Sbjct: 689 AEQIEFIDTAHNGSQALS-LAKTHKYDLIFLDIQMPIMDGVTACKLI------------- 734

Query: 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
               IE+  N S    PI+A+TA  +    E  L+ G   Y++KP + E L + +  + P
Sbjct: 735 ----IESSINES---TPIIAVTAHALAGEKENLLKVGFKNYLTKPLDEEVLRQTIFEYSP 787


>gi|423063248|ref|ZP_17052038.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
 gi|406715370|gb|EKD10526.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
          Length = 1493

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 207/698 (29%), Positives = 321/698 (45%), Gaps = 135/698 (19%)

Query: 212  ISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEI 271
            +++ +GI +  +    + +  V     +E     + E K  AE A  AKS+FLAT+SHEI
Sbjct: 687  VASQVGITIAQA---KLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEI 743

Query: 272  RTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 331
            RTPMN V+GM  +L+D EL   Q+D+V T + SG AL+++IN++LD +K+ESGKLELE  
Sbjct: 744  RTPMNAVIGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQ 803

Query: 332  SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT 391
             F LR  L++ L L SG++ +KG+ELA  I    P+T++ D  R RQ++ NL+ N+IKFT
Sbjct: 804  PFKLRNCLEECLELLSGRADEKGLELAYIIDPSTPKTILVDVTRLRQVLVNLVSNAIKFT 863

Query: 392  EKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFK 451
             +G + + V                                      K  + D      K
Sbjct: 864  SEGEVILAV--------------------------------------KATHPDAKKDVKK 885

Query: 452  SSSADLIN----LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 507
            S  +D       L   V DTG GIP +   R+F  F QV  S +R +GGTG+GL+IS+ L
Sbjct: 886  SDDSDFTESHYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRL 945

Query: 508  VGRMKGEIGFVSIPNI-------------------------------GSTFTFTAVFGNG 536
               M G++   S  N+                               GS F FT V    
Sbjct: 946  SQLMNGKMWVASWVNLLDEYHDETSSLISSVAGNPPPDFVRPQVFRPGSIFYFTIVCSGF 1005

Query: 537  SSTSNEHNSQQMNNQPN--SVSSEF-QGMKALVVDPRPIRAKVSRYHIQRLG---IQVEV 590
                         N P+    S +F  G K L+V+   I  K+    ++  G   ++V+ 
Sbjct: 1006 -------------NTPDLGEFSDDFLHGKKVLIVEHHDINQKLLIRQVKSWGMVPVRVKT 1052

Query: 591  VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK--LGCGFQSKLF--LL 646
             +D L+ L      +  +++I++   + + D +     +  L K  +   ++ K F  ++
Sbjct: 1053 GADALKVLHD----NPGLDLIILGINLPDMDEATLASRIRQLEKQMIAGKYRQKPFNLVM 1108

Query: 647  ANSISSSRA--NTSTDGVSIPSVIMKPLRSSMLAASLQRAMG----VGNKGNIRNWEL-- 698
             N  S++         GV++  ++ KPL+ S    +L +       +    +I+N E   
Sbjct: 1109 FNYASNTEVLRRLEAQGVNVAGLVNKPLKQSQFYNTLMQIFADSQTIEKHYHIKNAESGY 1168

Query: 699  -PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 757
             P++   H  L  +IL+ +DN  N KVA   L+R G        G +  + L    Q+D 
Sbjct: 1169 DPAIPQPHANL--RILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALN-RQQYDV 1225

Query: 758  CFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNF---HVPILAMTADV 814
              MD+QMPEMDG EA+K I                   AY + S+       I+AMTA+ 
Sbjct: 1226 ILMDVQMPEMDGLEASKHI-----------------CAAYSDGSDMGPRKPRIIAMTANA 1268

Query: 815  IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
            +Q   E CL +GMD Y++KP   E L   +++  P  P
Sbjct: 1269 MQGDREMCLNAGMDDYITKPVRREALAEALAKCHPISP 1306


>gi|398857234|ref|ZP_10612936.1| PAS domain S-box [Pseudomonas sp. GM79]
 gi|398241281|gb|EJN26937.1| PAS domain S-box [Pseudomonas sp. GM79]
          Length = 1463

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 178/601 (29%), Positives = 291/601 (48%), Gaps = 92/601 (15%)

Query: 259  AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 318
            AKS+FLA +SHEIRTPMN ++GM  + + T+LD  Q++Y+     S + L+ +IN++LD 
Sbjct: 736  AKSEFLANMSHEIRTPMNAIIGMSHLALRTDLDSRQRNYIEKVHRSAENLLGIINDILDF 795

Query: 319  AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 378
            +K+E+G++ LE   F L  +LD   ++   K++DKG+EL       +P  L+GDP R  Q
Sbjct: 796  SKIEAGRMSLEQTPFRLEDVLDSFAAMIGLKTEDKGLELLFQTPPDLPTALLGDPLRLGQ 855

Query: 379  IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 438
            ++ NL  N+ KFTE+G I V +  V    D +++                    H W   
Sbjct: 856  VLINLGNNAAKFTERGEIVVGMEEVGVQDDRVQL--------------------HFW--- 892

Query: 439  KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 498
                                     V DTG G+ ++  SR+F  F Q   S +R +GGTG
Sbjct: 893  -------------------------VRDTGIGMTVDQCSRMFQSFSQADSSTTRKYGGTG 927

Query: 499  IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSV--S 556
            +GLSISK LV  M G I   S P +GSTF F    G            Q   QP  +  +
Sbjct: 928  LGLSISKKLVELMDGHIWVESEPGVGSTFHFQVRLGV-----------QQGVQPRRMFKA 976

Query: 557  SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKIINMILV 613
             E  GM+ LVVD      ++     +  G++V+V  +    L+ L+     +   +++L+
Sbjct: 977  DELLGMRVLVVDDNASAREILSGMARSFGLEVDVAHNGSLALRMLADAEHKALPYDLVLM 1036

Query: 614  EQEVWEKD--TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKP 671
            +  +   D   +VS +   +L        S + + A     +R      G+ +P V+ KP
Sbjct: 1037 DWRMPGMDGVETVSRMHSASLMHT----PSVIMVTAFGREEAREEAERQGIQLPVVLTKP 1092

Query: 672  LRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNVNLKVAAAGL 729
            +  S L  ++   +G G +G+ R  E    +   L  L G ++L+V+DN +N ++A   L
Sbjct: 1093 VTPSSLLEAIGVVLGKGPQGDTRAGERSQQNASTLASLNGARLLLVEDNELNQELACELL 1152

Query: 730  KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789
            +  G  +     G++A ++L     FD   MD QMP MDG+ AT+ IR+ +  FN     
Sbjct: 1153 ESVGIRLKLARHGQEALDILAEDGNFDGVLMDCQMPVMDGYTATQRIRQ-QPRFNA---- 1207

Query: 790  GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
                           +P++AMTA+ +    E+ L SGM+ ++SKP + + ++  ++++  
Sbjct: 1208 ---------------LPVIAMTANAMDGDREQALSSGMNDHISKPLDVDDMFATLAKWIR 1252

Query: 850  P 850
            P
Sbjct: 1253 P 1253


>gi|110597007|ref|ZP_01385296.1| PAS:Response regulator receiver:GAF:ATP-binding region,
            ATPase-like:Histidine kinase A-like [Chlorobium
            ferrooxidans DSM 13031]
 gi|110341198|gb|EAT59663.1| PAS:Response regulator receiver:GAF:ATP-binding region,
            ATPase-like:Histidine kinase A-like [Chlorobium
            ferrooxidans DSM 13031]
          Length = 1407

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 191/620 (30%), Positives = 293/620 (47%), Gaps = 101/620 (16%)

Query: 245  GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
             ++E +  +E+A+ AKS+FLA +SHEIRTPMNGV+GM  +L+DT L   Q+ Y +    S
Sbjct: 873  ALVEARYASESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLDTSLSDEQRGYAQAVMES 932

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
               L+ LIN++LD +K+E+GK ELE + F+LR +LDDV S+ + +++DK +E     S  
Sbjct: 933  ADFLLGLINDILDFSKIEAGKFELEMLDFDLRNVLDDVSSIMAVRARDKELEFICAASPE 992

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            V   L GDPGR  Q++ NL GN+IKFT +G + V+V LV                    S
Sbjct: 993  VTPFLRGDPGRLYQVLNNLAGNAIKFTHQGEVAVSVALV--------------------S 1032

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
            G                          S+  DL+    SV DTG GIP +  + +F+ F 
Sbjct: 1033 G--------------------------SAQEDLLRF--SVRDTGIGIPEQKIAILFSSFT 1064

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF------GNGSS 538
            QV  S +R  GGTG+GL+IS+ LV  M GEIG  S  N GS F FT  F      GNG  
Sbjct: 1065 QVDASTTRKFGGTGLGLAISRQLVELMGGEIGVSSRENEGSEFWFTIPFKKQLPKGNGGR 1124

Query: 539  TSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 598
             S +                  G + L+VD       V R      G  V  +S   Q +
Sbjct: 1125 YSKD---------------AIAGTRILIVDDNATNRTVLRRQFLSWGAVVTELSGGAQVV 1169

Query: 599  SQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 655
            +++       +   + L++ ++ + D +     + +  KL       + ++ +S+ S  +
Sbjct: 1170 AELKRAHESGEPYRLALIDMQMPDMDGATLCRSIKDDEKLA----PTVLVMMSSLGSKCS 1225

Query: 656  NTSTDGVSIPSVIMKPLRSSML---AASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR-- 710
                  +   + + KP+  S L    A++  A       ++   E P  S      GR  
Sbjct: 1226 EEDLKRMGCSACLSKPILQSDLFDTFAAIIFADTEPGGSSMTAGESPKESQPQKKDGRGE 1285

Query: 711  --KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768
              ++L+ +D ++N KV    L + G  +  V  G +A   L     +D   MD+QMPEMD
Sbjct: 1286 GVRLLLAEDTSINQKVVIGILGKLGYHIDVVVNGAEAVRAL-ETTPYDLVIMDLQMPEMD 1344

Query: 769  GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
            G EAT+IIR  +                   V N  +P++A+TA  ++   E C+ +GM 
Sbjct: 1345 GLEATRIIRSPD-----------------SAVLNHRIPVIALTAHTMEGDRELCMHAGMT 1387

Query: 829  GYVSKPFEAEQLYREVSRFF 848
             YVSKP ++  L   + ++ 
Sbjct: 1388 DYVSKPIDSAILVETIRKWL 1407


>gi|345869886|ref|ZP_08821842.1| integral membrane sensor hybrid histidine kinase [Thiorhodococcus
           drewsii AZ1]
 gi|343922748|gb|EGV33447.1| integral membrane sensor hybrid histidine kinase [Thiorhodococcus
           drewsii AZ1]
          Length = 779

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 198/639 (30%), Positives = 303/639 (47%), Gaps = 125/639 (19%)

Query: 229 FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT 288
           F   + +I   +ED   + + +  AEA  +AKSQFLA++SHEIRTPMNG++GM ++L  T
Sbjct: 242 FNGMLEQIQLRDED---LRQARDAAEAGSLAKSQFLASMSHEIRTPMNGIIGMAELLWGT 298

Query: 289 ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 348
           +LD  Q+ +VRT Q S ++L+ +I++VLD +K+E+G+LELE V F+L A++     L S 
Sbjct: 299 QLDERQRHFVRTVQVSAESLLGIISDVLDFSKIEAGRLELEHVEFDLHALMGRTSDLLSE 358

Query: 349 KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 408
            ++ KG+EL   IS      ++GDPGR RQI+ NL+ N++KFTE G++ +++  +EE   
Sbjct: 359 TARRKGLELMTRISPHCSSRVMGDPGRLRQILMNLVSNAVKFTETGYVQLSLSCLEETEH 418

Query: 409 SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 468
            + V                                                 ++V DTG
Sbjct: 419 EVRVR------------------------------------------------IAVRDTG 430

Query: 469 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 528
            G+  E QSRIF  F Q   S SR +GGTG+GL+I+K LV  M G +   S+P  GS F 
Sbjct: 431 IGLSPEEQSRIFDRFSQADSSTSRRYGGTGLGLAITKQLVDLMHGTLTLDSLPGHGSVFQ 490

Query: 529 FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRY--HIQRLGI 586
                   S  S   + Q +N          +G++ L++D    R   +R       LGI
Sbjct: 491 IELTL---SKASPGWSDQTLN---------LEGLRVLLIDGD--REGSARLIDDCATLGI 536

Query: 587 QVEVVSDQLQ----CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNL-RKLGCGFQS 641
           +V+ V D  +     L+  A G+     +L   ++   D  V  +  + + + +G     
Sbjct: 537 EVQQVPDLGEAMELALTLAAGGNGFSLFVLDAAQLPSLDLPVGRVLRDLVDQAMGA---- 592

Query: 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG---------- 691
              LL    S+    +  DG+     +MKP+    LA    RA+GV   G          
Sbjct: 593 --VLLCEHRSAGAKPSGWDGL---ECLMKPVECQALA----RALGVIIHGSPLGEDKAFP 643

Query: 692 --NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATEL 748
             +    E PS+ LR       +L+ +DN VN  V  + L   G  AV+C +      EL
Sbjct: 644 ELDRPGGEQPSLGLR-------VLVAEDNPVNQDVIESMLNALGCKAVLCADGQALLAEL 696

Query: 749 LMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL 808
                 +D   MD QMP MDG+E T+ +R  E        RGE            ++P++
Sbjct: 697 --ARSDYDLVLMDCQMPLMDGYETTRRLRSREQA------RGE------------YLPVI 736

Query: 809 AMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
           A+TA  ++   E  L +GMD Y+ KPF+   L   + R+
Sbjct: 737 ALTAYAMEGDRERALAAGMDDYLVKPFKLADLAEVLRRW 775


>gi|153828763|ref|ZP_01981430.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae 623-39]
 gi|148875716|gb|EDL73851.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae 623-39]
          Length = 1331

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 297/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGHITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N      + R    G+ +L+V+DN
Sbjct: 947  L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHTDFDLVLMDMQMPVMDGITATEHIRA 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1060 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVSD 1113


>gi|153213464|ref|ZP_01948775.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae 1587]
 gi|124115928|gb|EAY34748.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae 1587]
          Length = 1331

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 298/615 (48%), Gaps = 102/615 (16%)

Query: 248  ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            EL+K  EAAD    AK  FLA +SHEIRTPMN +LGM  + ++T LD TQ+ YV     S
Sbjct: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             K L+ +IN++LD +K+E+GKL +E + FNL  +LD+V ++ S K+Q+KG+E  + I   
Sbjct: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  LIGDP R  Q++ NL GN++KFT +G I ++  +           ++L+  + TL 
Sbjct: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                  +V+DTG GI  +    +F  F 
Sbjct: 761  -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   SI+R +GGTG+GLSISK LV  M G+I   S    GSTF F+ V G   +   +  
Sbjct: 784  QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841

Query: 545  SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
                      +S    G+   + LVVD       +    +  +   V  VS+  + LS+I
Sbjct: 842  ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 658
                K  +M+ V+   W          +  ++ LG     K FL+      I+    N+ 
Sbjct: 892  Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                 + ++I+KP+  S L  ++  + G+ +  +  N    +   R    G+ +L+V+DN
Sbjct: 947  L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNEAYHNS--RPNFAGQSLLLVEDN 1000

Query: 719  NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             VN +VA   L+  G  VV    G++A E L     FD   MD+QMP MDG  AT+ IR 
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGITATEHIRA 1059

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                 N R +                +PI+AMTA+ +    E CL++GM+ ++SKP E +
Sbjct: 1060 -----NPRWQS---------------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1099

Query: 839  QLYREVSRFFPPIPD 853
            + Y +V R F  + D
Sbjct: 1100 KFY-QVLRHFLQVRD 1113


>gi|150017373|ref|YP_001309627.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903838|gb|ABR34671.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 951

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 193/629 (30%), Positives = 307/629 (48%), Gaps = 113/629 (17%)

Query: 221 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
           I  LV      T  RIA+ E     + + K +AE+A++AKSQFLA +SHEIRTPMNG+ G
Sbjct: 293 IKYLVCTAQDITEQRIAEAE-----LYKAKVEAESANIAKSQFLANMSHEIRTPMNGIFG 347

Query: 281 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
            L++L  + L + Q+++VR A+++   L+++IN++LD +K+E+ KL LE +SFNLR +++
Sbjct: 348 FLELLESSNLSLEQREFVREAKSASDILLNIINDILDFSKIEAKKLVLENISFNLRTVIE 407

Query: 341 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
           D +SLF  K+ +KG++L   I   +P+ +IGDP R +QI+ NL+ N +KFT+ G I + V
Sbjct: 408 DAVSLFVPKTLEKGIQLYTIIDPTIPDEVIGDPSRLKQILNNLLSNGVKFTDAGEIAIKV 467

Query: 401 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQ-DGSTSPFKSSSADLIN 459
              EE  +   +  E+  +   +SG  +       K FK+FNQ D ST            
Sbjct: 468 DYFEEENEIALLTFEVRDTGIGISGKDIQ------KLFKSFNQADAST------------ 509

Query: 460 LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS 519
                                          +R +GGTG+GLSI + LV  M GEI   S
Sbjct: 510 -------------------------------TRKYGGTGLGLSICRELVNMMDGEITVDS 538

Query: 520 IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRY 579
           + + GSTF F  V    S  ++EH          S+  +   +  L+VD      K++  
Sbjct: 539 VLDKGSTFRF-CVRLKISKRASEH---------ISIFEKVNDVNILIVDNDENSRKITSS 588

Query: 580 HIQRLGIQVEVVSDQLQCLSQIASGSKI---INMILVEQEVWEKDTSVSTLFVNNLRKLG 636
           +++  G+ +  V    + +S I S +     I+++++E E+   +          L+ + 
Sbjct: 589 YLKGTGLHIIEVDGAGEAISTIISNNDTKNKISIVIIECEIPGMNCYE---LARTLKNIP 645

Query: 637 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV--------- 687
                KL LL +            G S  S + KPL+   L   +   +G+         
Sbjct: 646 IAKNIKLILLMSRYKGDFKAAMEYGFS--SYLTKPLKRDDLLDCIAVNLGLKKEDEEHFE 703

Query: 688 -GNKGNIRN-WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA 745
             NK  ++N + L  +         +IL+ +DN VN K+  + LK  G        GK+A
Sbjct: 704 DSNKNVVKNIYNLSEI---------RILLAEDNEVNRKIFISMLKSRGITCDVALDGKEA 754

Query: 746 TELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 805
               +    +D  FMD QMP MDG+EAT  IR +E N     R+              H 
Sbjct: 755 LR-KVSEEDYDIVFMDCQMPVMDGYEATAEIRRIEEN-----RK--------------HT 794

Query: 806 PILAMTADVIQATYEECLRSGMDGYVSKP 834
            I+A+TA+ ++   E+C++SGMD Y++KP
Sbjct: 795 KIVAVTANAMEGDSEKCIKSGMDNYITKP 823


>gi|323494892|ref|ZP_08099984.1| sensory box sensor histidine kinase/response regulator [Vibrio
            brasiliensis LMG 20546]
 gi|323310856|gb|EGA64028.1| sensory box sensor histidine kinase/response regulator [Vibrio
            brasiliensis LMG 20546]
          Length = 1318

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 195/639 (30%), Positives = 313/639 (48%), Gaps = 100/639 (15%)

Query: 221  IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
            ++ +VG +   T  ++ + E     + + K+ A+A   AK +FLA +SHEIRTPMNG+LG
Sbjct: 573  VSGIVGILLDLTERKLMETE-----LRDAKETADAMSRAKGEFLANMSHEIRTPMNGILG 627

Query: 281  MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
            M+ + ++TELD  Q  Y+     S K L+ +IN++LD +K+E GKL +E + F+L  + D
Sbjct: 628  MVHLALNTELDPAQHKYLTRINESAKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFD 687

Query: 341  DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
            ++ ++ S K+Q+K +E  + I  +VP  LIGDP R  Q++ NL GN++KFTE+G + V V
Sbjct: 688  NLTNVISLKAQEKKIEFLLDIDPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVVAV 747

Query: 401  YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 460
                     IE+ TE                                        D++ L
Sbjct: 748  --------RIELLTE---------------------------------------RDVV-L 759

Query: 461  IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520
              SV+DTG GI  E  + +F  F Q   SI+R  GGTG+GLSISK LV  M G++   S 
Sbjct: 760  HFSVKDTGIGIDKEKIAHLFDAFSQADSSITREFGGTGLGLSISKQLVELMGGQLSVSST 819

Query: 521  PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 580
               GSTF FT   G   +        +M +    V+    G +ALVVD       +    
Sbjct: 820  LGAGSTFAFTITCGLQEA--------KMRDISKPVAG-LAGKRALVVDDNDSARNILVTL 870

Query: 581  IQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640
            +  +    + VS+  + L +I +     +++ V+   W          +   +       
Sbjct: 871  LNAMHFDAKAVSNGFEALDEIRNSQ--FDLLFVD---WNMPGLNGIELLQTAQNEQLLEH 925

Query: 641  SKLFLL---ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 697
            SK FL+      IS  +A++      + S+I+KP+  S L  ++  + G+ +    RN  
Sbjct: 926  SKNFLVTAYGREISLDQASSKL----VDSLIVKPVNPSNLLDAIMDSFGIEHV--TRN-- 977

Query: 698  LPSMSL-RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 756
             P+  L + +  G+ IL+V+DN VN +VA   LK     V+  + G++A  +L   H  D
Sbjct: 978  TPANQLEKPVFGGQTILLVEDNEVNQEVAIGLLKGTNVNVLTADNGQQAINML-EQHPVD 1036

Query: 757  ACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 816
               MD+QMP +DG  AT+           +IRR         N     +PI+AMTA+ +Q
Sbjct: 1037 LVLMDMQMPVLDGVSATE-----------QIRR---------NPDWQQLPIIAMTANAMQ 1076

Query: 817  ATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIPDRS 855
            +  + C+ +GM+ +++KP     LY+ +S+   P  + S
Sbjct: 1077 SDVDRCIAAGMNSHLAKPINVRNLYQTLSQHLLPSDESS 1115


>gi|264677650|ref|YP_003277556.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
 gi|262208162|gb|ACY32260.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
          Length = 1755

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 192/617 (31%), Positives = 293/617 (47%), Gaps = 96/617 (15%)

Query: 233  VNRIAKVEEDYHGMMEL-KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 291
            +N+   + + +   +EL +++AE A+VAKSQFLA +SHEIRTPMN VLGML ++  T+LD
Sbjct: 995  INQDITIRKQFENSLELARQQAEQANVAKSQFLANMSHEIRTPMNAVLGMLQLVRQTQLD 1054

Query: 292  VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 351
              QQDYV  AQ++ ++L++L+N++LD +K+++GKLEL+  +F+L  +L ++  + SG   
Sbjct: 1055 TRQQDYVVKAQSAAQSLLALLNDILDFSKIDAGKLELDIHAFSLEDMLRELAVVLSGNQH 1114

Query: 352  DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 411
             K VEL   +   +P  + GD  R  QI+ NL GN++KFTE G + +             
Sbjct: 1115 HKTVELMFEVDPSLPLEVRGDKLRILQILINLGGNALKFTEAGQVVIH------------ 1162

Query: 412  VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 471
                                           QD ++          + L VSV DTG GI
Sbjct: 1163 --------------------------LSALRQDAAS----------VTLQVSVTDTGIGI 1186

Query: 472  PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 531
              E  SRIF  F Q   S +R  GG+G+GL I + LV  M  E+   S P  GS F+F  
Sbjct: 1187 TPEQLSRIFNGFTQAESSTTRRFGGSGLGLVICQRLVALMGSELRVDSEPGRGSCFSFEL 1246

Query: 532  VFGNGSSTSNEHNSQQMNNQPNSVS---SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 588
                           ++ N+  S+S    +      LVVD   I  ++    I+  G   
Sbjct: 1247 CL-------------EVENKALSISVVAPDISHCHVLVVDDCEISREILVKTIEMRGWSC 1293

Query: 589  EVVSDQLQCLSQIASGSKI---INMILVEQEVWEKD-TSVSTLFVNNLRKLGCGFQSKLF 644
            + V    + L +I S  K     +++LV+  + E D  + + L       + C     L 
Sbjct: 1294 DAVESGAKALVKIISALKAGRPYDVVLVDWRMPEMDGVATAKLIKQQFPDVACPVVIMLS 1353

Query: 645  LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR 704
                 +      +  D V    ++ KP+    L AS+ RA     + ++     P   L 
Sbjct: 1354 AYGRELLGK--ISEQDRVIFRDILTKPITPQQLIASIARARQPAQRDSLP----PVFELP 1407

Query: 705  HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL-LMPPHQFDACFMDIQ 763
              L G ++L+V+DN +N +VA   L   GA+VV  E G +   +    P  FD   MDIQ
Sbjct: 1408 QRLAGVRLLLVEDNALNRQVAGELLTHEGASVVMAEDGLQGVRIATQQPDAFDIIIMDIQ 1467

Query: 764  MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 823
            MP MDG +AT+ IR              V + A        +PILAMTA+   A  E CL
Sbjct: 1468 MPVMDGLQATREIR-------------AVPVLAA-------LPILAMTANASHADREACL 1507

Query: 824  RSGMDGYVSKPFEAEQL 840
            ++GM+ +V KP + +++
Sbjct: 1508 QAGMNDHVGKPIDIDEV 1524


>gi|254477960|ref|ZP_05091345.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
 gi|214028545|gb|EEB69381.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
          Length = 760

 Score =  256 bits (654), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 177/616 (28%), Positives = 298/616 (48%), Gaps = 84/616 (13%)

Query: 240 EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 299
           +E    + + +K A+ A+ AKS+FLA +SHEIRTPMNGV+GM +++++T+LD  Q+ Y  
Sbjct: 220 DEREFALEDARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILETDLDDDQKMYAE 279

Query: 300 TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 359
           T   SG AL+++IN++L+ +K+E+GK+EL+   FNL+  ++DV++L S K+ +K VE+ +
Sbjct: 280 TISKSGSALLTIINDILNFSKIEAGKMELDRAPFNLQTAIEDVVTLLSPKAAEKNVEVTL 339

Query: 360 YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSS 419
                +PE   GD GR RQI+TN+ GN++KFT  G++++ V                  S
Sbjct: 340 RYDPGLPEFFEGDVGRIRQILTNIAGNAVKFTSAGYVYIEV------------------S 381

Query: 420 KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 479
            +T  GY                                +L +SV+DTG GIP +  + I
Sbjct: 382 GHTAGGYS-------------------------------DLRISVKDTGTGIPADQLNSI 410

Query: 480 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSST 539
           F  F QV  + +R   GTG+GL+IS  L+G M G +   S+   GSTFT           
Sbjct: 411 FNAFEQVDGAATRNFEGTGLGLAISTRLLGMMGGTVSVTSVLGEGSTFTVELPL-----K 465

Query: 540 SNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQ 596
             EH       QP       +G+  LVVD   +   +    +   G+    V+     L+
Sbjct: 466 VREH-----QRQPRVDEVSLEGLNVLVVDDLELNRIILNERLDTWGVNTVAVASGDAALE 520

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
            L       +  ++IL + ++   D       + ++ +    +     ++ +S+ ++   
Sbjct: 521 TLLDARHEGRSFDIILQDFQMPGMDGHELARRIRDIPE----YVDLPIVILSSVENTIDQ 576

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
            + + +    V +KP+R+S L A + +A+  G+          +          K+L+ +
Sbjct: 577 YTRERLGRCEVALKPVRASQLRAVMSKALNGGSPARPGKLSTAARGAAPAQPQLKLLLAE 636

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
           DN  N  V    LK     V+    G+ A +L    H+ D   MD+ MP+ DG EAT  I
Sbjct: 637 DNKTNQLVVTRMLKSAPIEVIVASNGEDAVDLF-KAHRPDIVLMDMMMPQKDGIEATGDI 695

Query: 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
           R +E + N                     P++A+TA+ +Q+  E+CL +GMD ++SKP +
Sbjct: 696 RALEASRNWP-----------------RCPVVALTANALQSHKEQCLAAGMDDFLSKPIK 738

Query: 837 AEQLYREVSRFFPPIP 852
            ++L   V+++    P
Sbjct: 739 KQELLDAVTKWVDVDP 754


>gi|365092001|ref|ZP_09329252.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax sp. NO-1]
 gi|363415738|gb|EHL22864.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax sp. NO-1]
          Length = 1033

 Score =  256 bits (654), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 186/614 (30%), Positives = 287/614 (46%), Gaps = 106/614 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           + +AE A   KS FLA +SHEIRTPMN V+GM  + + T+L   Q+DYV   Q SG+ L+
Sbjct: 259 RARAEDASQMKSDFLANMSHEIRTPMNAVIGMSHLALATDLTPRQRDYVEKIQRSGQHLL 318

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            LIN++LD +K+E+GKLE+E V F+LR +LD+V +L S K   KG+EL   +   +P+ L
Sbjct: 319 GLINDILDFSKIEAGKLEVEVVDFDLRGVLDNVANLVSEKCAHKGLELLFDVDPALPDHL 378

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R  QI+ N   N++KFTE+G I V V   E V D   V                 
Sbjct: 379 RGDPLRLGQILVNYANNAVKFTERGEIIVRV--TETVRDDTGVL---------------- 420

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                         L   V+DTG G+  E QSR+F  F Q   S
Sbjct: 421 ------------------------------LRFEVQDTGIGLTSEQQSRLFRSFEQADTS 450

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R +GGTG+GL+IS+ L G M GE+G  S   +GSTF FTA  G G++          +
Sbjct: 451 TTRKYGGTGLGLAISRKLAGLMGGEVGVQSQAGVGSTFWFTARLGLGTA----------H 500

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
           + P   + + +G   LVVD       +    + R+   V   S          SG + + 
Sbjct: 501 HAPLLPTPDLRGRHVLVVDDSEQARHILGEMLTRMSFTVTTAS----------SGKEAVA 550

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL----------LANSISSSRANTST 659
           +    ++           F++ +     GF +   L          +  +          
Sbjct: 551 LARAAEQAGRP---CELAFLDWMMPGMDGFDTHRALASLQRPPHTIIVTAAGRDDVQDEL 607

Query: 660 DGVSIPSVIMKPLR-SSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVD 716
               +  ++ KP+  S+M  A++Q   G     + R    P  +  HL  + G ++L+VD
Sbjct: 608 QRAGLTLMLSKPVSPSAMFDAAMQALGGQARSADGRAAHAPRHAT-HLSAIAGARVLLVD 666

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
           DN++N +V A  L   G AV     G+ A ++L     +D   MD+QMP MDG  AT+ +
Sbjct: 667 DNDLNQQVGAELLSGAGLAVDVAHNGQVALDMLAQT-SYDLVLMDMQMPVMDGLTATRHL 725

Query: 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
           R                    +N +   +P+LAMTA+ +    + C+ +GM+G+++KP +
Sbjct: 726 R--------------------QNPAWADLPVLAMTANAMSHDRDLCIAAGMNGHLAKPID 765

Query: 837 AEQLYREVSRFFPP 850
            + L+  + ++  P
Sbjct: 766 PDALFATLLQWIRP 779


>gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1410

 Score =  256 bits (654), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 201/655 (30%), Positives = 311/655 (47%), Gaps = 129/655 (19%)

Query: 244  HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
              + +++ +A AA  AKS+FLAT+SHEIRTPMN V+GM  +L+DT L  TQQDYV T ++
Sbjct: 659  QDLAKVRDEALAATKAKSEFLATMSHEIRTPMNAVIGMTGLLLDTRLTSTQQDYVETIRS 718

Query: 304  SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 363
            S  AL+SLIN++LD +K+ESGKLELE   F+LR  +++ L L + K+  K +ELA  I  
Sbjct: 719  SSDALLSLINDILDFSKIESGKLELEQHPFDLRTCIEESLDLLATKAVSKNIELAYLIDP 778

Query: 364  RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 423
              P  +IGD  R RQI+ NL+ N++KFTE G + +++  V     S+E            
Sbjct: 779  ITPSKVIGDGARLRQILVNLLSNAVKFTETGEVVISLKAV-----SLE------------ 821

Query: 424  SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483
               P+     S +     + + +T P +        +  +V DTG GIP    +R+F  F
Sbjct: 822  ---PIV----SEENLDENSTETTTQPNR------YQIQFAVRDTGIGIPPARMNRLFKSF 868

Query: 484  MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS------------------------ 519
             QV  S SR +GGTG+GL ISK L   M G++   S                        
Sbjct: 869  SQVDSSTSRQYGGTGLGLVISKRLAEMMGGQMWVESHKTIAGEPPTDFIPSMTNSTGNRP 928

Query: 520  -----------------IPN--IGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 560
                             IPN  +GSTF FT +  + S     H  ++    P     E  
Sbjct: 929  LLDPVKIDQVSQTSKSFIPNKAVGSTFYFTIIVESCS-----HLKKEWGKTP-----ELT 978

Query: 561  GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEK 620
              + L+VD      +V     Q  G+  +  ++ ++ L+ +  G    +M L+E ++ + 
Sbjct: 979  EKRLLIVDNNATNRQVLTLQTQAWGMLAKTAANGVEALNILRQGEP-FDMALLEMQMPDF 1037

Query: 621  DTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI---PSVIMKPLRSSML 677
            D          +RKL    +  L LL     +S    S D   +    + + KP++ S L
Sbjct: 1038 D---GLSLAKEIRKLSPYKRVPLVLL-----TSMGRQSIDRAQLYDFSACLNKPIKQSQL 1089

Query: 678  AASLQRAMG-------VGNKGNIR-NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 729
               L   +G       + +K  ++   ++P ++     L  +IL+ +D+ VN KVA   L
Sbjct: 1090 YNVLMNILGGESLEVHLADKDRVKLTKDIPLLAKT---LPLRILLAEDHLVNQKVALQIL 1146

Query: 730  KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM----EHNFNN 785
            +R G        G +  E L     +D   MD+QMPEMDG EA + I+++    E + + 
Sbjct: 1147 QRMGYRADVAGNGLEVLEALR-RQTYDVILMDMQMPEMDGLEAARQIKKLYGDREQDMSE 1205

Query: 786  RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
            R R                  I+A+TA+ +++   +C+ +GMD Y+SKP   EQL
Sbjct: 1206 RPR------------------IIAVTANAMESDRNDCIAAGMDDYISKPIRMEQL 1242


>gi|302036187|ref|YP_003796509.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604251|emb|CBK40583.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 945

 Score =  256 bits (654), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 188/621 (30%), Positives = 283/621 (45%), Gaps = 101/621 (16%)

Query: 239 VEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 298
           V E    + + K+ AEAA+ AKSQFLA +SHEIRTPMNGVLGM ++L+ T L   Q+   
Sbjct: 257 VRERTTELHQAKEAAEAANRAKSQFLANMSHEIRTPMNGVLGMTELLLSTALTQKQRSLT 316

Query: 299 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 358
            T   SG  L+ +INE+LD +K+E+GKL+LE + F LR  ++D + LF+  +  K +EL 
Sbjct: 317 ETLHRSGTGLMDIINEILDFSKIEAGKLKLERIEFGLRQTVEDAVDLFAETAGRKHLELT 376

Query: 359 VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 418
            ++   +P+T+IGDP R RQI+ NL+GN+IKFT+ G + VT+ LV     ++ ++  +  
Sbjct: 377 CFVPPDIPDTVIGDPVRLRQILLNLVGNAIKFTQSGDVAVTLELVTPTTTNLTLKFRI-- 434

Query: 419 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 478
            ++T  G P A +   ++ F                                        
Sbjct: 435 -RDTGVGIPEATQARLFQAFS--------------------------------------- 454

Query: 479 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS 538
                 Q   S +R  GGTG+GL+I K L   M G++G  S+   GSTF FT        
Sbjct: 455 ------QADNSTTRKFGGTGLGLAIVKQLALLMGGDVGVDSVSGQGSTFWFTVEL----- 503

Query: 539 TSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 598
                 + Q      +      G   L+VD  P    +   H+   G  V   +  L+ L
Sbjct: 504 ----EQAAQRTAASGATERPLDGFSILIVDDNPTNRHILETHLSAWGAAVLSATSGLEAL 559

Query: 599 SQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 655
           + +    +  + I++ +++  + + D       +    +L     S + L+A S      
Sbjct: 560 ALLDRQCTAQRRIHLAVLDIHMPDMDGMTLAQTIREDARL-----SGMVLVALSSVDQVT 614

Query: 656 NTSTDGVSIPSV-IMKPLRSSMLAASLQR------AMGVGNKGNIRNWELPSMSLRHLLL 708
           + S    S+ S  + KP   S+L   L R        G        +  +P         
Sbjct: 615 DESQRHPSLFSAWLRKPAHQSLLKDCLTRLCHHVPTTGAPAPVQPDDQAVP--------F 666

Query: 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768
              +L+ +DN VN +VA   L+  G     VE G++A E L     FD   MD  MPEMD
Sbjct: 667 AAHVLLAEDNPVNREVAFTMLELLGCTTTMVENGREAVEALT-NRSFDLVLMDCHMPEMD 725

Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
           G  AT +IRE E                 +     H  I+A+TA+ +Q   E CL +GMD
Sbjct: 726 GLTATALIREQE----------------TQATQPRHTTIVALTANALQGDRERCLAAGMD 769

Query: 829 GYVSKPFE----AEQLYREVS 845
            Y+SKPF      E L+R +S
Sbjct: 770 DYLSKPFTLTTLKEVLHRRLS 790


>gi|386827600|ref|ZP_10114707.1| PAS domain S-box [Beggiatoa alba B18LD]
 gi|386428484|gb|EIJ42312.1| PAS domain S-box [Beggiatoa alba B18LD]
          Length = 1359

 Score =  256 bits (654), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 195/661 (29%), Positives = 310/661 (46%), Gaps = 130/661 (19%)

Query: 229  FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT 288
            +QA    I + ++    ++  K+ AEAA  AKS+FLA +SHEIRTPMNGV+GM ++L++T
Sbjct: 480  YQAVGRDITERKQTEEALLRAKETAEAATRAKSEFLANMSHEIRTPMNGVMGMTELLLNT 539

Query: 289  ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 348
             L V Q++Y    + S  AL +L+N++LD +K+E+GKL LE + F+L     +V  L S 
Sbjct: 540  TLTVQQREYASIIRNSTNALQTLLNDILDFSKIEAGKLTLEPIPFDLETATLEVARLLSI 599

Query: 349  KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 408
             +  KG +L V  S   P  +IGD GR RQI+TNL GN++KFT++G++FV V   E   +
Sbjct: 600  TASSKGFDLIVRYSPTAPRYVIGDAGRMRQILTNLTGNAVKFTQRGYVFVNVDCAERTGE 659

Query: 409  SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 468
               +  ++                                                +DTG
Sbjct: 660  EAVIRFQI------------------------------------------------QDTG 671

Query: 469  QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 528
             GI ++    IF  F Q   S +R  GGTG+GL+I+K LV  M G+I  +S    GS FT
Sbjct: 672  VGIAVDKLEAIFDKFTQADTSTTRKFGGTGLGLAITKQLVTLMNGKINVISDVGKGSMFT 731

Query: 529  FTAVFGNGSSTSNEHNSQQMNNQPN-SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 587
             +  F          N+ +M  +P  ++ +     + LVVD   +  +V +  ++   I+
Sbjct: 732  VSIPF------PLVKNAVEMPTRPQIALPNTLINTRVLVVDDNIVNQQVLQEQLESFSIR 785

Query: 588  VEVVSDQLQCLSQIASGSK--------IINMIL------VEQEVWEKDTSVSTLFVNNLR 633
             +V +D    L ++A            I++ I+      V  E   KD   +   +  L 
Sbjct: 786  CDVCNDAETALQRLAESYAAQDPYWLLILDYIMDGMNGEVLGETIRKDQKYNNTLLILLS 845

Query: 634  KLGCGFQSKLF-----------------------LLANSISSSRANTSTDGVSIPSVIMK 670
              GC + +++                         L +   +  A T     ++P+++  
Sbjct: 846  STGCQYDAQILQNKGFSAYLLKPLPVRHLRQTIIALWSDYQNKFAQTFIKIDTVPNILPN 905

Query: 671  PLRSSMLAASLQRAMGVGN-KGNIR-NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
             L          +A+  GN + N + N   P        LG ++L+++DN+VN  VA   
Sbjct: 906  KLND--------KAINGGNSEANTQINLRAP--------LGTRVLLIEDNDVNRLVAMNM 949

Query: 729  LKRYGAAVVCVERGKKATE-LLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787
            L+  G  V     GK A E +L   +Q+D   MD+QMPEMDG EAT++IRE+E N N   
Sbjct: 950  LQELGCQVTEAINGKMAVEKILDNDYQYDFVLMDVQMPEMDGIEATRLIRELE-NINQ-- 1006

Query: 788  RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                            H+ I+AMTA  ++   + CL++GMD Y++KP   E+L   + ++
Sbjct: 1007 ----------------HLIIIAMTAGAMKGDADRCLKAGMDDYLAKPITLERLTAVIGKY 1050

Query: 848  F 848
             
Sbjct: 1051 I 1051



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 125/294 (42%), Gaps = 38/294 (12%)

Query: 561  GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEK 620
            G + L+++   +   V+   +Q LG QV    +    + +I       + +L++ ++ E 
Sbjct: 930  GTRVLLIEDNDVNRLVAMNMLQELGCQVTEAINGKMAVEKILDNDYQYDFVLMDVQMPEM 989

Query: 621  DTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS-TDGVSIPSVIMKPLRSSMLAA 679
            D   +T  +  L  +       L ++A +  + + +        +   + KP+    L A
Sbjct: 990  DGIEATRLIRELENIN----QHLIIIAMTAGAMKGDADRCLKAGMDDYLAKPITLERLTA 1045

Query: 680  SLQRAMGVGNKGNIR------NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYG 733
             + + + +    + +      N  LP+         +K+L+V+DN VN  VA   L++ G
Sbjct: 1046 VIGKYIALEQPNSEKLTTKEGNMMLPNQ--------QKVLLVEDNEVNSLVAITMLEQLG 1097

Query: 734  AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVS 793
              V  V  GK+A  +     Q+D   MDI+MP MDG EATK IR                
Sbjct: 1098 YQVESVVNGKEAVAICQEK-QYDIILMDIRMPVMDGVEATKQIR---------------- 1140

Query: 794  IEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
               +E    +  PI+A+TA+      +     GM+  + KPF  E L + + ++
Sbjct: 1141 --LHERKETYQTPIIALTANTQPHEVKHYREVGMNDCLGKPFSIEGLQQVLKKY 1192


>gi|350552380|ref|ZP_08921582.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
            700588]
 gi|349794322|gb|EGZ48139.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
            700588]
          Length = 2334

 Score =  256 bits (654), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 182/625 (29%), Positives = 306/625 (48%), Gaps = 90/625 (14%)

Query: 228  IFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 287
            IF+ +   +  V +D   + + +++AE A  AKS FLA +SHEIRTPMN V+G+  +L+ 
Sbjct: 1568 IFKLSSGEVVAVYDDLTEIKQAQQEAELASRAKSDFLANMSHEIRTPMNAVIGLSQLLLQ 1627

Query: 288  TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 347
            T LD  QQDY+     + + L+ +IN++LD +K+ESG LELE   F +  ILD +  LF 
Sbjct: 1628 TPLDERQQDYLNKIHNASRMLLGIINDILDYSKIESGNLELEQTGFQITDILDQMAVLFG 1687

Query: 348  GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 407
              + +KG+EL  +I   VP+ L+GD  R  Q+++NL+ N+IKFT +G + +TV       
Sbjct: 1688 EAASEKGLELLFHIHAEVPQALVGDALRLSQVLSNLLSNAIKFTLQGSVTLTV------- 1740

Query: 408  DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 467
                                              +QD    P +      + L   V+D+
Sbjct: 1741 -------------------------------SQIHQD----PHQ------VQLRFCVKDS 1759

Query: 468  GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
            G G+  E Q+++F PF Q   S +R  GGTG+GL IS+ LV +M G +   S    G+ F
Sbjct: 1760 GIGMTPEQQAKLFKPFTQADTSTTRKFGGTGLGLVISRKLVEKMGGSLQLESAIEKGACF 1819

Query: 528  TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 587
             F       +  S+      + N P     E QG + L+VD       + R  + +   +
Sbjct: 1820 WFDLSLPICTVLSH------ITNCP-----ETQGRRILIVDDHASARLILREMLLQCDYE 1868

Query: 588  VEVVSDQLQCLSQIASGSKI---INMILVEQEVWEKDTSVSTL-FVNNLRKLGCGFQSKL 643
            +E  +   Q + ++ +  +     N IL++ ++      + T+  +  L+  G       
Sbjct: 1869 IEEANSGEQAIEKMLAAEQAGGGFNFILLDWKMPNGMDGLQTIDHIKQLQASGVLRNQHT 1928

Query: 644  FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL 703
             +L  S + ++   + D   I + + KP+ ++ L  +LQRA     +   ++ ++  +  
Sbjct: 1929 EILMIS-AYNKQEIALDSHHISAFLSKPVTATTLFEALQRAEKGDTQSATKHRQISKVP- 1986

Query: 704  RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 763
               L G +IL+V+DN +N +VA   L++ GA V  VE G +A  + +  H FD   MD+Q
Sbjct: 1987 --ALTGLQILLVEDNEINQEVALRMLEKTGAEVFIVEDGAQAVAVALQTH-FDLILMDLQ 2043

Query: 764  MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 823
            MP MDGFEAT+ IR           +G+             +PI+A++A V+Q   +   
Sbjct: 2044 MPVMDGFEATRQIRA----------QGQ------------RMPIIALSAAVMQEDKQRAA 2081

Query: 824  RSGMDGYVSKPFEAEQLYREVSRFF 848
             +G D +++KP ++  LY+ +  + 
Sbjct: 2082 AAGADDHIAKPIDSAVLYQTLRHWL 2106


>gi|445499004|ref|ZP_21465859.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
 gi|444788999|gb|ELX10547.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
          Length = 1210

 Score =  256 bits (654), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 181/607 (29%), Positives = 293/607 (48%), Gaps = 90/607 (14%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K+ AE A  +KS FLA +SHEIRTPMN ++GM  + + T L   Q DYV+  Q +G+ L+
Sbjct: 458 KQTAEDATRSKSLFLANMSHEIRTPMNAIIGMSHLALKTGLTPRQHDYVQKIQRAGQHLL 517

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +IN++LD +K+E+ KL++E   F L  +L+++ +L   K   KG+EL   ++  VP  L
Sbjct: 518 GIINDILDFSKIEADKLQVENQPFELDQLLENLATLIGDKVNAKGLELVFDVAPDVPTAL 577

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GD  R  QI+ N   N++KFTE+G + VTV +                           
Sbjct: 578 VGDALRLGQILINYANNAVKFTEQGEVAVTVRV--------------------------- 610

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                + S    + L  +V DTG G+  E   ++F  F Q   S
Sbjct: 611 ---------------------RGSDEHHVLLHFAVRDTGIGLSEEQMRQLFQSFQQADAS 649

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R +GGTG+GL+ISK L   M GE+G  S P +GSTF FTA    G S           
Sbjct: 650 TTRKYGGTGLGLAISKKLAQLMGGEVGVESQPGLGSTFWFTARLQIGHSA---------- 699

Query: 550 NQPNSV-SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI---ASGS 605
            +P+ + S + +G + LVVD       V    ++ +   V V S   + L  +   A G 
Sbjct: 700 -RPSLLPSPDLRGKRLLVVDDNDSARSVLAELLRGMRFDVRVASSGAEALDMVRDAAVGG 758

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
           + ++++L++   W+            +R L      ++ ++  +              I 
Sbjct: 759 EPLHVVLLD---WQMPVMSGIDTAAAIRALALQEPPRMMMV-TAYGREEVQQQAHNAGID 814

Query: 666 SVIMKPLRSSMLAASLQRAMG--VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 723
            V++KP+ +S+L  +L R +G  V +    R  ++ +++    L G ++L+ +DN +N +
Sbjct: 815 DVLIKPVNASVLLNTLIRLLGGEVDDSTLARPAQVSTLAALATLRGARVLLAEDNELNQQ 874

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           VAA  L   G  V     G +A  +     Q+D   MD+QMP MDG EAT+ +R      
Sbjct: 875 VAAELLADAGLVVEIANNGAEAVAMAQ-REQYDIVLMDMQMPVMDGVEATRALR------ 927

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
                    ++ A +      +P++AMTA+ +QA  E C+++GM  +V KP E + L+R 
Sbjct: 928 ---------ALPALDG-----LPVVAMTANAMQADRELCIQAGMVDFVIKPIEPDDLWRA 973

Query: 844 VSRFFPP 850
           + R+ PP
Sbjct: 974 LLRWVPP 980


>gi|427715757|ref|YP_007063751.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 7507]
 gi|427348193|gb|AFY30917.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 7507]
          Length = 1536

 Score =  256 bits (653), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 194/605 (32%), Positives = 301/605 (49%), Gaps = 97/605 (16%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            +++AE+A  +KS FLA +SHEIRTPMN VLGM  ++++T L+  QQD++ T + SG AL+
Sbjct: 882  RRQAESASQSKSAFLANMSHEIRTPMNAVLGMTGLMLETPLNREQQDFMETIRISGDALL 941

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +LINE+LD +K+E+G++ LE ++F+L   +++VL L + ++  K +ELA  I   VP  L
Sbjct: 942  TLINEILDLSKLEAGEMALETLNFDLSTCVEEVLELLAPQAHSKELELAALIYPHVPTHL 1001

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GD  R RQI+ NL+GN+IKFT  G          EVV   EV ++ S++          
Sbjct: 1002 QGDASRLRQILMNLIGNAIKFTSVG----------EVVVRAEVRSQTSTT---------- 1041

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                        + +  ++ DTG GI  E Q ++FTPF QV  S
Sbjct: 1042 ----------------------------VTIHFAITDTGLGITPEDQHQLFTPFTQVDAS 1073

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG-SSTSNEHNSQQM 548
             +R +GGTG+GL+I K LV  M GEIG  S    GS F F   F       S+ H+  Q+
Sbjct: 1074 TTRKYGGTGLGLAICKQLVTLMGGEIGVESQLGEGSKFWFDVPFTKQLQPISSIHDRIQL 1133

Query: 549  NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---S 605
             N+           + LVVD      K+  +   R G+QV+        LS I +     
Sbjct: 1134 TNR-----------RLLVVDDNATNRKIIYHQATRWGMQVDKAESAATALSAIYAAYEQK 1182

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
            +I ++ILV+ ++ E D     + +    K      +   ++  S +          +   
Sbjct: 1183 QIYDVILVDMQMPEID----GMKLGEQIKQDAAIANIPLIMLTSTNQRDEIQRALNIGFA 1238

Query: 666  SVIMKPLRSSMLAASLQRAMGVGNK---GNIR--NWE-LPSMSLRHLLLGRKILIVDDNN 719
            + ++KP++ S L  ++   +G   +   G +R  N E + S +   +    +IL+ +DN 
Sbjct: 1239 AYLVKPVKPSRLLDTIMTILGSQRELTAGEVRVENPETVGSPTPDAIAPKIRILLAEDNL 1298

Query: 720  VNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK-II 776
            VN KVA   L+R G +      G++  +LL  +P   +D   MD QMP +DG E TK I 
Sbjct: 1299 VNQKVALKQLERLGYSADVAGNGREVLQLLEKIP---YDLILMDCQMPVLDGLETTKEIH 1355

Query: 777  REMEHNFNNRIRRGEVSIEAYENVSNFHVP-ILAMTADVIQATYEECLRSGMDGYVSKPF 835
            R  E  F +R R                 P ++AMTA+ ++   + C+ +GMD Y+SKP 
Sbjct: 1356 RWSESCFASRRR-----------------PVVIAMTANAMKEDRQMCIDAGMDDYLSKPV 1398

Query: 836  EAEQL 840
              E+L
Sbjct: 1399 IKEKL 1403


>gi|146294229|ref|YP_001184653.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
 gi|145565919|gb|ABP76854.1| PAS/PAC sensor hybrid histidine kinase [Shewanella putrefaciens
            CN-32]
          Length = 1771

 Score =  256 bits (653), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 180/600 (30%), Positives = 295/600 (49%), Gaps = 89/600 (14%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++A+AA  AK  FLA +SHEIRTPMN ++GM  + + T LD  Q++YV   + + ++L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYVEKIERASQSLL 1089

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            S+IN++LD +K+E+GKL+++AV F L  +L+D+  +FS K   K +EL   ++  VP  L
Sbjct: 1090 SIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAVAPNVPRHL 1149

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GD  R  Q++ NLM N+IKFTE+G + +++ LVE+  D + +   +       SG  + 
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQNDDVTLRFSVRD-----SGIGLT 1204

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
            D   + K FK+F+Q                      DT                     S
Sbjct: 1205 DEQQA-KLFKSFSQ---------------------ADT---------------------S 1221

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+I K LV  M G IG  S    GSTF FT               Q  +
Sbjct: 1222 TTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYFTVKL------------QISS 1269

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             Q  +V  E +GM  LVVD       + R  ++ +G  V+ V    + +S+       + 
Sbjct: 1270 GQKLTVGQELEGMSVLVVDDNATARDIMRTALESMGFNVDTVRTGEEAVSRCIQHEYAVA 1329

Query: 610  MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
            +I      W+  +         +++      +   L+ ++ ++    T  + + +   I 
Sbjct: 1330 LI-----DWKMPSMDGLEAARQIQQQAKA--APRILMVSAHANHEFLTQIEQLGLAGYIS 1382

Query: 670  KPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
            KP+ +S L   +  A+G      +R   E     L   L G+++L+V+DN +NL+VA   
Sbjct: 1383 KPISASRLLDGIMNALGRAGILPVRRHNEALDPQLLLPLKGKRVLLVEDNEMNLEVATEF 1442

Query: 729  LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
            L++ G  +     G+ A + L     +D   MD QMP MDG++AT  IR+          
Sbjct: 1443 LEQVGIILSIATNGQIALDKL-SQQSYDLVLMDCQMPVMDGYQATMAIRQ---------- 1491

Query: 789  RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            R E++          H+P++AMTA+ +    E CLR+GM+G+++KP E   LY+ + ++ 
Sbjct: 1492 RPELA----------HLPVIAMTANAMAGDKEMCLRAGMNGHIAKPIEVNILYQTLLKYL 1541


>gi|451949034|ref|YP_007469629.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
           10523]
 gi|451908382|gb|AGF79976.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
           10523]
          Length = 1041

 Score =  256 bits (653), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 178/604 (29%), Positives = 298/604 (49%), Gaps = 87/604 (14%)

Query: 252 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
           +A+ A+ AKS FLA +SHEIRTPMN ++GM+ + ++ +L    ++Y+ T ++S ++L+++
Sbjct: 277 EAQTANEAKSSFLANMSHEIRTPMNAIIGMVGLSLNKKLSPKLREYLLTVRSSAESLLAI 336

Query: 312 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
           IN++LD +K+E+GK+ LE + F L  + D +  LFS ++  + +EL + +   VP  L G
Sbjct: 337 INDILDFSKIEAGKITLERIDFQLHQLFDKLADLFSDQAAARNIELVIGVEAGVPVALRG 396

Query: 372 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
           DP R  Q+  NL+GN+IKFTEKG +FV          +++ ET+                
Sbjct: 397 DPLRMEQVFINLLGNAIKFTEKGVVFVHA--------TVDSETD---------------- 432

Query: 432 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
                                   +++ ++ SV DTG GI  E    +F PF Q   S++
Sbjct: 433 ------------------------NMVKILFSVSDTGMGISEEQYESLFEPFTQADGSMT 468

Query: 492 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 551
           R +GGTG+GLSI + LVG   G+I   S    G+T  FTA F   +    E   Q +   
Sbjct: 469 REYGGTGLGLSICRRLVGLHGGDIWVKSKAGEGTTVFFTAEF---TRQPVEREIQYV--- 522

Query: 552 PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMI 611
              V +  +G++ L+V+   I + ++   ++     V+VVS      ++I    +  N+I
Sbjct: 523 ---VPATIRGLRVLIVEDNEIASCITSNILESFHFDVDVVSSCAVAQTRIGGKIEKYNLI 579

Query: 612 LVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKP 671
           L++  + E D       V  +R +  G  S   ++  +    R             + KP
Sbjct: 580 LMDWRMPEVD---GVECVKKIRAMEGG-DSVPIIMMTAFGGEREVMLAREAGANYFLTKP 635

Query: 672 LRSSMLAASLQRAM----GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAA 727
           ++ S+L  ++         + +  + R      +S  H L+G +IL+ +DN +N  VA  
Sbjct: 636 VKQSLLFDTIMDIFDYPEAMHSSLDDRETRQGVVSSEH-LVGVRILLAEDNRINQNVARE 694

Query: 728 GLKRYGAAVVCVERGKKATELLMP-PHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
            L+  G  V     G++A  +L     +FDA  MD+QMP MDGF+AT+ IR         
Sbjct: 695 LLESVGVIVEIATNGQEAVHILQDRGDEFDAVLMDVQMPVMDGFQATEAIR--------- 745

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
                      EN +   +P++A+TA  +Q   E+C+  GM+ YV+KP   E L+  ++R
Sbjct: 746 -----------ENPALTEIPVIAVTAHAMQGDREKCMAIGMNDYVAKPITPELLFSVLTR 794

Query: 847 FFPP 850
           +  P
Sbjct: 795 WTRP 798


>gi|442609954|ref|ZP_21024682.1| BarA sensory histidine kinase (= VarS = GacS) [Pseudoalteromonas
           luteoviolacea B = ATCC 29581]
 gi|441748546|emb|CCQ10744.1| BarA sensory histidine kinase (= VarS = GacS) [Pseudoalteromonas
           luteoviolacea B = ATCC 29581]
          Length = 921

 Score =  256 bits (653), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 192/637 (30%), Positives = 309/637 (48%), Gaps = 97/637 (15%)

Query: 214 TSIGILVI---ASLVGHIFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATV 267
           TSIG+ +      +  HI QAT +    +E+     ++L   K++A+ A+  KS FLA +
Sbjct: 237 TSIGVKMAFQKEEMQKHIDQATSDYRETLEQYETQNIQLSIAKREAQDANRVKSDFLAKM 296

Query: 268 SHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 327
           SHE+RTP+NGV+G    L  T L+  Q+DY+ T   S  +L+++I+++LD +K+E+G ++
Sbjct: 297 SHELRTPLNGVIGFTRQLYKTPLNRHQKDYLDTIVLSANSLMNIISDILDFSKLEAGAMD 356

Query: 328 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 387
           LE + F LR ++++V++L +  + DK +EL+VYI+ RVPE LIGDP RF+Q++ NL+ N+
Sbjct: 357 LEHIQFQLRDVVNEVMTLLAPSAHDKQLELSVYINRRVPENLIGDPTRFKQVLINLINNA 416

Query: 388 IKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 447
           IKFTEKG + + +                        G+ + D             D  T
Sbjct: 417 IKFTEKGSVKIDI------------------------GHRMID-------------DQRT 439

Query: 448 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 507
           S           L+VSV DTG GI  E Q  +FTPF Q   SI+R  GGTG+GL I+K++
Sbjct: 440 S-----------LLVSVSDTGVGIAQEKQDTLFTPFGQADSSITRKFGGTGLGLIITKHI 488

Query: 508 VGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVV 567
           V  MKG I   S    G+ FTF A+F       N H +  M  +P       Q  + L  
Sbjct: 489 VEAMKGRITLNSAQGNGTCFTFNAIF----DLPNHHFNNDMPIKP------LQHKRVLYF 538

Query: 568 DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL 627
           + +    +     +Q   +QV   SD+   L  +         I+      ++  ++ + 
Sbjct: 539 ETQEHTHQAVAALLQEWEMQVTACSDEETFLKALEPEFNYDVCIVGHMATVDQMPALKS- 597

Query: 628 FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687
           +++ +R         L+L+ N+IS +    S  G    + + KP+ +  L   L     +
Sbjct: 598 YISKVR----SQTDYLYLMLNTISHN-MRESLIGSGADACLSKPVNNRKLCELLAAPYRL 652

Query: 688 GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATE 747
            +       ++ S   +  +L  K+L+ DDN+ NLK+    L+    ++     G +A  
Sbjct: 653 DHP------DVSSDEDQMDILPLKVLVADDNDANLKLITTLLEEQVESIDKAHNGAQAIS 706

Query: 748 LLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPI 807
            L   H++D  FMDIQMP  DG  A K I +   N +                     PI
Sbjct: 707 -LCKSHKYDIIFMDIQMPITDGITACKTILDASLNED--------------------TPI 745

Query: 808 LAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
            A+TA  +    EE L+ G  GY++KP + + L + +
Sbjct: 746 FAVTAHALTTEKEELLKIGFKGYLTKPIDEDMLKQTI 782


>gi|406830344|ref|ZP_11089938.1| multi-sensor hybrid histidine kinase [Schlesneria paludicola DSM
            18645]
          Length = 1165

 Score =  256 bits (653), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 199/637 (31%), Positives = 311/637 (48%), Gaps = 95/637 (14%)

Query: 225  VGHIFQ--ATVNRI--AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
            VG IF+   T   I  AK+ ED   +   K+ AE+A+ AK +FLA VSHEIRTPMN +LG
Sbjct: 481  VGSIFKWFGTCTDITDAKLAEDE--LRVAKETAESANRAKGEFLANVSHEIRTPMNAILG 538

Query: 281  MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
            + ++ +DT L   Q+  + T +++   L+++IN++LD +K+E+GKLEL   +F+LR +L 
Sbjct: 539  LTELTLDTSLSDIQRQSLSTVKSAADNLLTIINDLLDFSKIEAGKLELFPSNFSLRTVLG 598

Query: 341  DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
            D L   + ++  KG+EL  +I D V ++LIGDPGR RQ++ NL+GN+IKFT++G + V+V
Sbjct: 599  DTLRALAVRAHKKGLELVCHIQDDVVDSLIGDPGRLRQVLLNLIGNAIKFTDEGEVVVSV 658

Query: 401  YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 460
              V  V+   +V  E S                                           
Sbjct: 659  ETVSGVLPHCDVALEFS------------------------------------------- 675

Query: 461  IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520
               V DTG GIP E Q  IF  F Q   S +R +GGTG+GL+I+  LV  M GEI   S 
Sbjct: 676  ---VRDTGIGIPFEKQETIFNAFEQEDASTTRKYGGTGLGLTIAARLVACMGGEILVESE 732

Query: 521  PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 580
               GS F+F+A F        +H        P++ +     +K L+VD       +    
Sbjct: 733  IGSGSRFSFSARF--------KHQPLSSVPAPSASADLLYQLKVLIVDDNATNRSILGEW 784

Query: 581  IQRLGIQVEVVSD---QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637
            ++R  +    VSD    +  L++  +  +   ++L++  + E D       V  +R++  
Sbjct: 785  LRRWKMNPCTVSDGIAAIDILAEAFNAGQPFALVLLDLRMPEMD---GLEVVTRIREIP- 840

Query: 638  GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM--GVGNKGNIRN 695
            G  +   +L +S         T  + I + ++KP + S L  ++ R M   +  + N  +
Sbjct: 841  GLSNVRVVLLSSEDRPGDIARTRDLGIKAQLLKPFQQSELLETIYRVMNGAIPQQPNQTD 900

Query: 696  W-ELPSMSLRHLLLGR----KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 750
               +P+      L  R    +IL  +D++ N ++    L   G  V     GK+A  L  
Sbjct: 901  EPRIPTERAARPLSSRVAPLRILAAEDHDFNAQLLDQLLSGQGHDVHMATDGKQA--LAQ 958

Query: 751  PPH-QFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 809
              H ++D   +DI MPE+DGF+  K IRE E N  N                  H+P++A
Sbjct: 959  AIHGEYDLMLLDIHMPELDGFQVIKAIREHEKNVGN------------------HLPVIA 1000

Query: 810  MTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
            +TA   +A  E CL SGMD ++ KPF+A  L+  + R
Sbjct: 1001 LTARSAKADRERCLASGMDDFLPKPFKAADLFAAIER 1037


>gi|386020082|ref|YP_005938106.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri DSM
           4166]
 gi|327480054|gb|AEA83364.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri DSM
           4166]
          Length = 914

 Score =  256 bits (653), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 200/655 (30%), Positives = 316/655 (48%), Gaps = 120/655 (18%)

Query: 209 LLAISTSIGILVIASLVGHIFQATV------------NRIAKVEEDYHGMMELKKKAEAA 256
           +L  + S+GI ++      + +A+V            +RI  ++E+ +   E  ++A + 
Sbjct: 346 ILVTAGSLGIELLGLYGAAVVKASVAFELITLSIGLADRINLLKEEGYRSREAAERAASE 405

Query: 257 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVL 316
           + AKS+FLA +SHEIRTP+NGVLGML +L +T LD +QQ Y+ T  +SG +L+++IN++L
Sbjct: 406 NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPLDRSQQFYLDTISSSGNSLMAVINDIL 465

Query: 317 DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 376
           D A++ SGKL LE + F+L  ++ + + LF+ ++ +K + L V +   VP  + GDP R 
Sbjct: 466 DYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEKQLSLHVGLEPGVPRRIRGDPTRL 525

Query: 377 RQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 436
           +QI+ NL+ N++KFTE GH+ + V                 SS+ T              
Sbjct: 526 KQILMNLLSNALKFTEHGHVLLEV-----------------SSRQT-------------- 554

Query: 437 GFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 496
                 QDGS             L+  V D+G G+  E  +++F  F Q   S +R +GG
Sbjct: 555 ------QDGSR-----------RLVFCVSDSGIGMRQEVLAQLFESFSQGDSSTTRRYGG 597

Query: 497 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS 556
           +G+GL+ISK LV  M G I   S P  GS F F       S   +  N Q +  +P  ++
Sbjct: 598 SGLGLAISKELVEMMNGHIEVQSAPGRGSRFCFEIPLHAASDVEDPLN-QLLAGRPALLA 656

Query: 557 SE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ---CLSQIASGSKIINMIL 612
           S+  QG++AL             + ++R G++ E   D  +   CL+   +       +L
Sbjct: 657 SQDAQGLEAL------------SHLLRRWGMRTERCQDPERLPDCLADFTAPP-----LL 699

Query: 613 VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM--- 669
           V    W    S        L +L    +S   +L            T G+ + S+ +   
Sbjct: 700 VLLAPWPGSPS------QWLERLRPHLESNQRVLMLYSPIHEPPPVTPGLRLVSLALPLQ 753

Query: 670 -KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK-ILIVDDNNVNLKVAAA 727
             PLR ++     Q     G +G+      PS +      G   IL+ +DN VN  V   
Sbjct: 754 SAPLREALQMLYAQEPATAGERGS------PSPAQPQ---GEPCILVAEDNPVNQMVVRG 804

Query: 728 GLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
            LK+ G AV   + G++A +L    PH      MD +MPE+DGFEA++ IRE+E      
Sbjct: 805 LLKKRGYAVQLADNGRQAVDLYRRDPHAVQLILMDCEMPELDGFEASRQIRELE------ 858

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
               E  ++A        VPI+A+TA V+    +  L +GMD ++ KP E+ QLY
Sbjct: 859 ---AEQQLQA--------VPIIAVTAHVLAEHRQRGLDAGMDEFIGKPLESRQLY 902


>gi|189501026|ref|YP_001960496.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           BS1]
 gi|189496467|gb|ACE05015.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           BS1]
          Length = 993

 Score =  256 bits (653), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 186/597 (31%), Positives = 285/597 (47%), Gaps = 97/597 (16%)

Query: 249 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 308
           +  +A+AA+ AKS+FLA +SHEIRTPMNGV+GM ++L+ + LD  Q+ +  T  ASGK L
Sbjct: 326 MASEADAANKAKSEFLANMSHEIRTPMNGVIGMSELLLRSTLDKEQKKFAETINASGKNL 385

Query: 309 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 368
           + L+N++LD +K+E+ KLE+E + FNL  +LD+++++FS K+  KG+       + +P  
Sbjct: 386 LHLLNDILDFSKIEADKLEIEEIDFNLLDLLDEIINMFSYKAGKKGLNFTFLPDEDIPLL 445

Query: 369 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 428
           L GDPGR +QI+ NL+ N+IKFT++G I V V L E+  D+  +                
Sbjct: 446 LRGDPGRIKQILVNLISNAIKFTDEGEILVNVELEEDFGDNARIR--------------- 490

Query: 429 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 488
                                             +V DTG GI       IF PF+Q   
Sbjct: 491 ---------------------------------FTVSDTGIGIDESRMDAIFEPFVQADG 517

Query: 489 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 548
           S  R +GGTG+GLSIS  L   M G I   S P+ GS F F+  F        +H  Q  
Sbjct: 518 STIRKYGGTGLGLSISNKLARNMGGRIQVRSTPSQGSMFYFSIDF-----IKQQHPDQIY 572

Query: 549 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ---LQCLSQIASGS 605
            +    +S    G   L+++P     K+ +          E  SD    ++ L + A   
Sbjct: 573 AD----ISIPLTGFNVLLIEPCQASRKLIKIFFSLWNSCFEEASDWESGVKKLQKAAESG 628

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
            + +++L+      +D         +L +        + ++  + +   A+   D +  P
Sbjct: 629 VLPDIVLIALPEERRDEVFEKFRTGDLLE-------NVIVIGLTSAGRGADFQPDPLGKP 681

Query: 666 SVIM-KPLRSSML---AASLQRAMG----VGNKGNIRNWELPSMSLRHLLLGRKILIVDD 717
              + KP+R   L    A L +  G    +  K  I    +     RH     +IL+V+D
Sbjct: 682 DACLEKPIRGKELYACVADLLKRRGSTPELLEKNKIPVHSVTEKERRHF----RILLVED 737

Query: 718 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
           + VN  V  + L++ G     V+ G +A   L   H +D   MD QMPEMDG+EAT+   
Sbjct: 738 SEVNQLVLLSMLQKEGYEADVVQNGTEALVALAKVH-YDLVLMDCQMPEMDGYEATRC-- 794

Query: 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
                    IRRG+       NV N  VPI+A+TA+ +    E CL++GMD Y++KP
Sbjct: 795 ---------IRRGQ------GNVMNPEVPIVAITANAMTGDRERCLQAGMDDYMAKP 836


>gi|443477298|ref|ZP_21067155.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena biceps PCC
           7429]
 gi|443017594|gb|ELS32000.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena biceps PCC
           7429]
          Length = 834

 Score =  256 bits (653), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 192/641 (29%), Positives = 300/641 (46%), Gaps = 101/641 (15%)

Query: 226 GHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 285
            H F      I +++     ++  ++ AE ++ AKS FLA +SHEIRTPMNGVLGM D+L
Sbjct: 260 NHDFVYVGRDITELKRKEQELLAARQFAEQSNRAKSIFLANMSHEIRTPMNGVLGMTDLL 319

Query: 286 MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 345
           + T LD  QQD+V   + SG  L+SLIN +LD +K+E G+L+LE++ FNL   ++++L L
Sbjct: 320 LSTTLDDRQQDFVENIRLSGNLLLSLINRILDLSKLEEGELQLESLPFNLEQCIEEILEL 379

Query: 346 FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 405
           F  ++ ++ +E+     + +P  L+ D  RFRQI+ NL+GN+IKFT +G I V +     
Sbjct: 380 FGLQAHNQSLEINASFEEDLPRLLMADTVRFRQIMMNLIGNAIKFTSEGEIVVRI----- 434

Query: 406 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 465
                                   +R   ++  K+  Q         +S   I L  SV 
Sbjct: 435 ------------------------ERDRDFENKKSLEQ---------ASPSQIYLRFSVI 461

Query: 466 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP---N 522
           DTG GI    Q ++F PF QV  S +R  GGTG+GL+IS+ LV  M+GEIG +S P   +
Sbjct: 462 DTGIGIHPSNQDKLFKPFSQVDTSTNRRFGGTGLGLAISRQLVELMQGEIG-ISSPVDND 520

Query: 523 IGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMK---ALVVDPRPIRAKVSRY 579
            G+ F F   F           + Q N + +S+  + Q +     LVVD      K  RY
Sbjct: 521 RGTCFWFVLPF-----------TLQTNQESSSLVYDRQSLSDRHILVVDANQYARKTIRY 569

Query: 580 HIQRLGIQVEVVSDQLQCLSQIASG-------SKIINMILVEQEVWEKDTSVSTLFVNNL 632
           ++ + G  +   S   + ++ +  G       +  I+ +L++   W       T  +  +
Sbjct: 570 YLTKFGANIHEASSLPEAIAYLDHGQNQNHNNNHNIDAVLID---WRLTNFNGTEAIRQI 626

Query: 633 RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN 692
                     +  L  +       T+ D       + KP +   L  +L  A+G+    N
Sbjct: 627 HSKEKFINLPIIALLTANRQGETQTALDQ-GFCGYVTKPFKKQRLLKALFLALGL----N 681

Query: 693 IRNWELPSMS-------------LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCV 739
           I N  +P+ +             L   L   +IL+ +DN  N KV  A L + G      
Sbjct: 682 IPNPSIPTTASSISSRENQEEAILMEKLRSLRILLAEDNITNQKVTLAYLSQLGIQSDLA 741

Query: 740 ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYEN 799
           E G++  +L+     +D   MD QMP +DG++ T+ IR +E                  N
Sbjct: 742 ENGEQVLQLIQ-TKSYDIILMDCQMPVLDGYDTTEAIRRLEA----------------IN 784

Query: 800 VSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
            +   + I+AMTA+      + CL  GMD Y+SKP   +QL
Sbjct: 785 QTPKPILIIAMTANAFTEDRDRCLAIGMDDYLSKPIRKQQL 825



 Score = 40.0 bits (92), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 32/149 (21%)

Query: 704 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGA----------AVVCVERGKKATELLMPPH 753
           R  L  R IL+VD N    K     L ++GA          A+  ++ G+         H
Sbjct: 546 RQSLSDRHILVVDANQYARKTIRYYLTKFGANIHEASSLPEAIAYLDHGQNQNHNNN--H 603

Query: 754 QFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD 813
             DA  +D ++   +G EA + I   E   N                    +PI+A+   
Sbjct: 604 NIDAVLIDWRLTNFNGTEAIRQIHSKEKFIN--------------------LPIIALLTA 643

Query: 814 VIQATYEECLRSGMDGYVSKPFEAEQLYR 842
             Q   +  L  G  GYV+KPF+ ++L +
Sbjct: 644 NRQGETQTALDQGFCGYVTKPFKKQRLLK 672


>gi|406836798|ref|ZP_11096392.1| PAS domain S-box [Schlesneria paludicola DSM 18645]
          Length = 800

 Score =  255 bits (652), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 178/608 (29%), Positives = 295/608 (48%), Gaps = 88/608 (14%)

Query: 236 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 295
           I + +E    + + K+ AE+A+ AKS FLA +SHEIRTPMN V+GM D+++DTEL+  Q 
Sbjct: 267 ITERKEMEEALRKAKEAAESANRAKSAFLANMSHEIRTPMNAVIGMTDLVLDTELNDLQD 326

Query: 296 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 355
            Y++  + S ++L+ LIN++LD +K+E+ KLEL+   F+LR +L D +   + + Q   +
Sbjct: 327 SYLKIVKDSAESLLRLINDILDFSKIEADKLELDQTPFSLRDLLGDAIKTLALQVQGDEL 386

Query: 356 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415
           ELA +++  VPE L GDP R RQ++TNL+ N++KFTE+G I + V    ++   + +   
Sbjct: 387 ELACHVTPDVPEYLTGDPYRLRQVVTNLIANAVKFTERGEIVLQVSRESQIAGDVRLHF- 445

Query: 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 475
             S ++T  G P AD+ H                                          
Sbjct: 446 --SVRDTGIGIP-ADKQH------------------------------------------ 460

Query: 476 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535
              +F  F QV  S +R +GGTG+GL+I+  LV  M GE+   S    GSTF FTA F  
Sbjct: 461 --LLFNAFSQVDSSTTRRYGGTGLGLAITARLVRLMDGEVWVESESGRGSTFHFTARFAL 518

Query: 536 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVS 592
            +                   +  + ++ L+VD       + +  +    ++   V+   
Sbjct: 519 ATVPKPAFEPL----------ASLKDLRVLIVDDNATNRLILQEILNSWAMRPTAVDSAP 568

Query: 593 DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 652
             LQ LS+    ++  +++L +  + + D       +   R+    F S + ++ +S +S
Sbjct: 569 AALQELSRSIQANEPYDLVLSDVHMPDVDGFELASTIRQDRR----FHSTVIMMLSSGAS 624

Query: 653 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKI 712
           S        +   + +MKP++ S L  ++   +G   K   +     S  +       +I
Sbjct: 625 SGDAARCRELGAAAHLMKPIKQSDLHLTIATTLGNAAKRAAQQ----STKIDSTCPPLRI 680

Query: 713 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEA 772
           L+ +D   N  +A   LK++G  V     G++A E       FD   MD+QMPE+DGF+A
Sbjct: 681 LLAEDGYANQTLAVGVLKKWGHTVTIANNGQEAIE-AWEREPFDVILMDVQMPEIDGFQA 739

Query: 773 TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832
           T                  ++I A E  ++ H+PI+AMTA+ ++   EECL +GMD Y++
Sbjct: 740 T------------------IAIRAKEQGADRHIPIIAMTANAMKGDREECLAAGMDEYIA 781

Query: 833 KPFEAEQL 840
           KP    +L
Sbjct: 782 KPIRWPEL 789


>gi|398842018|ref|ZP_10599222.1| PAS domain S-box [Pseudomonas sp. GM102]
 gi|398106973|gb|EJL96986.1| PAS domain S-box [Pseudomonas sp. GM102]
          Length = 1463

 Score =  255 bits (652), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 179/601 (29%), Positives = 289/601 (48%), Gaps = 92/601 (15%)

Query: 259  AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 318
            AKS+FLA +SHEIRTPMN ++GM  + + T+LD  Q++Y+     S + L+ +IN++LD 
Sbjct: 736  AKSEFLANMSHEIRTPMNAIIGMSHLALRTDLDSRQRNYIEKVHRSAENLLGIINDILDF 795

Query: 319  AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 378
            +K+E+G++ LE   F L  +LD   ++   K++DKG+EL       +P  L+GDP R  Q
Sbjct: 796  SKIEAGRMSLEQTPFRLEDVLDSFAAMIGLKTEDKGLELLFQTPPDLPTALLGDPLRLGQ 855

Query: 379  IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 438
            ++ NL  N+ KFTE+G I V +  V    D +++                    H W   
Sbjct: 856  VLINLGNNAAKFTERGEIVVGMEEVGVQDDRVQL--------------------HFW--- 892

Query: 439  KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 498
                                     V DTG G+  E  SR+F  F Q   S +R +GGTG
Sbjct: 893  -------------------------VRDTGIGMTAEQCSRMFQSFSQADSSTTRKYGGTG 927

Query: 499  IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSV--S 556
            +GLSISK LV  M G I   S P +GSTF F    G            Q   QP  +  +
Sbjct: 928  LGLSISKKLVELMDGHIWVESEPGVGSTFHFQVRLGV-----------QQGVQPRRMFKA 976

Query: 557  SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKIINMILV 613
             E  GM+ LVVD      ++     +  G++V+V  +    L+ L+     +   +++L+
Sbjct: 977  DELLGMRVLVVDDNASAREILSGMARSFGLEVDVAHNGSLALRMLADAEHKALPYDLVLM 1036

Query: 614  EQEVWEKD--TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKP 671
            +  +   D   +VS +   +L        S + + A     +R      G+ +P V+ KP
Sbjct: 1037 DWRMPGMDGVETVSRMHSASLMHT----PSVIMVTAFGREEAREEAERQGIQLPVVLTKP 1092

Query: 672  LRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNVNLKVAAAGL 729
            +  S L  ++   +G G KG+ R  E    +   +  L G ++L+V+DN +N ++A   L
Sbjct: 1093 VTPSSLLEAIGVVLGRGPKGDTRADERSQQNASTVASLNGARLLLVEDNELNQELACELL 1152

Query: 730  KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789
            +  G  +     G++A ++L     FD   MD QMP MDG+ AT+ IR+ +  FN     
Sbjct: 1153 ESVGIRLRLARHGQEALDILAEDGNFDGVLMDCQMPVMDGYTATQQIRQ-QPRFNA---- 1207

Query: 790  GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
                           +P++AMTA+ +    E  L SGM+ ++SKP + + ++  ++++  
Sbjct: 1208 ---------------LPVIAMTANAMDGDRERALSSGMNDHISKPLDVDDMFATLAKWIR 1252

Query: 850  P 850
            P
Sbjct: 1253 P 1253


>gi|373950837|ref|ZP_09610798.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|386323330|ref|YP_006019447.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|333817475|gb|AEG10141.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|373887437|gb|EHQ16329.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
          Length = 1784

 Score =  255 bits (652), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 182/607 (29%), Positives = 304/607 (50%), Gaps = 89/607 (14%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++A+AA  AK  FLA +SHEIRTPMN ++GM  + + TELD  Q++YV   + + ++L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            S+IN++LD +K+E+GKL++++V F L  +L+D+  +FS K+  K +EL   ++  VP  L
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYL 1152

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GD  R  Q++ NLM N+IKFTE+G + +++ LVE+  D + +   +  S   L+    A
Sbjct: 1153 LGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQA 1212

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                  K FK+F Q                      DT                     S
Sbjct: 1213 ------KLFKSFTQ---------------------ADT---------------------S 1224

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+I K LV  M G+IG  S    GSTF FT            H S   +
Sbjct: 1225 TTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKL---------HIS---D 1272

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI---ASGSK 606
             Q   +  E +GM  LVVD       + R  ++ +G +V+ V    + +S+    A    
Sbjct: 1273 GQKLVLEQELEGMSVLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAISRCLLQAYEVA 1332

Query: 607  IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
            +I+  +   +  E    +     +  +           L+ ++ +     T  + +++  
Sbjct: 1333 LIDWKMPNMDGLETARQIQLQAQSQSQSQPQSHPQPKILMVSAHADHEFLTQIEQLALAG 1392

Query: 667  VIMKPLRSSMLAASLQRAMGVGNKGNI---RNWELPSMSLRHLLLGRKILIVDDNNVNLK 723
             I KP+ +S L   +  A  +G +G +   R  E  +  L   L G++IL+V+DN +NL+
Sbjct: 1393 YISKPISASRLLDGIMNA--IGREGILPVRRRTEELAPQLLVPLQGKRILLVEDNEMNLE 1450

Query: 724  VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
            VA+  L++ G  +     G+ A + L   H FD   MD QMP MDG++AT+ IR      
Sbjct: 1451 VASEFLEQVGIILSIATNGQIALDKLSQQH-FDLVLMDCQMPVMDGYQATQAIR------ 1503

Query: 784  NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
                +R E++          ++P++AMTA+ +    + C+R+GM+ +++KP E   LY+ 
Sbjct: 1504 ----KRPELA----------NLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQT 1549

Query: 844  VSRFFPP 850
            + ++  P
Sbjct: 1550 LLKYLAP 1556


>gi|291613628|ref|YP_003523785.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
 gi|291583740|gb|ADE11398.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
          Length = 908

 Score =  255 bits (652), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 184/618 (29%), Positives = 299/618 (48%), Gaps = 105/618 (16%)

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           E +  AEAA   K +FLA +SHE+RTPMN V+G+  + + TEL   QQDY++   +S K+
Sbjct: 243 EARSHAEAASHIKDEFLANMSHELRTPMNAVIGLSHLCLQTELSDKQQDYLQKIHSSAKS 302

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L+ ++N++LD +K+E+GK+EL+ ++F L  +L ++ ++   KS +K +EL +  +  VP 
Sbjct: 303 LLGILNDILDVSKIEAGKMELDRIAFELDEVLGNLSTILWAKSHEKNLELLLETAPDVPS 362

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 427
            L+GDP R  Q++ NL GN++KFT KG          EVV SI++E E            
Sbjct: 363 VLVGDPLRLGQVLINLAGNAVKFTAKG----------EVVVSIDLEKE------------ 400

Query: 428 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487
                                       D + L  +V+DTG G+      ++F PF Q  
Sbjct: 401 --------------------------EGDQVVLRFAVKDTGIGMSQSEIDKLFRPFTQAD 434

Query: 488 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 547
            SI+R  GGTG+GL+ISK L+  M G+I   S P  GS F FTA F           ++ 
Sbjct: 435 TSITRKFGGTGLGLTISKRLIEMMGGKIWVESTPGSGSKFIFTANF---------LKAKG 485

Query: 548 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS-- 605
             N P +  + F GM+ L VD       + + +++     V V S+    LS +   +  
Sbjct: 486 RENAPRTEFAGFDGMRVLAVDDSENSLSILKNYLESFSFDVSVASNGRSALSTVRKANKD 545

Query: 606 -KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS----KLFLLA----NSISSSRAN 656
            K  ++ +++ ++ E D       +   R+L    ++    K+ L+A    N   + R N
Sbjct: 546 GKPFSLAILDWKMPEMDG------LELARELHAMTEAENKPKILLIAGYGQNGTPALRNN 599

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL----GRKI 712
              DG     V+ KP   + L  ++ R  G  ++     + +       LL+    G  +
Sbjct: 600 KVVDG-----VLEKPFNQNKLFDAISRISG-PDQSATGKFRITGAQFNPLLVSQVRGAHL 653

Query: 713 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEA 772
           L+V+DN +N +VA   L+ +G  V   E G++A   L    QFD   MD+QMP MDG  A
Sbjct: 654 LLVEDNEINQQVAQELLEGFGIKVAVAENGEEAIARL-NEEQFDGVLMDMQMPVMDGISA 712

Query: 773 TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832
           T+ IR                    +N     +PI+A+TA+V  +     L +GM+ ++ 
Sbjct: 713 TREIR--------------------KNPKFATLPIIALTANVYVSEQNAFLAAGMNDHIG 752

Query: 833 KPFEAEQLYREVSRFFPP 850
           KP + ++L   ++++  P
Sbjct: 753 KPLDPDRLVATLAKWLRP 770


>gi|75907786|ref|YP_322082.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75701511|gb|ABA21187.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1550

 Score =  255 bits (652), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 195/617 (31%), Positives = 291/617 (47%), Gaps = 108/617 (17%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            + +AE A  AKS FLA +SHEIRTPMN VLGM  ++++T L+  Q+D++ T + SG AL+
Sbjct: 881  RSQAELASHAKSAFLANMSHEIRTPMNAVLGMTGLMLETLLNQEQRDFMETIRISGDALL 940

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +LINE+LD +K+E+G++ LE ++FNL   +++VL L + ++  KG+E+A  I   VP  L
Sbjct: 941  TLINEILDLSKLEAGEMALENLNFNLSTCVEEVLDLLAPQAHSKGLEIAALIYRHVPIQL 1000

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GD  R RQI+ NL+GN+IKFT  G          EVV  +E+ +E           P  
Sbjct: 1001 QGDASRLRQILMNLIGNAIKFTSFG----------EVVMRVELRSE----------TPTT 1040

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
               H                             +V D+G GI LE Q ++FTPF QV  S
Sbjct: 1041 AIIH----------------------------FAVTDSGLGITLEDQHKLFTPFTQVDAS 1072

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG-SSTSNEHNSQQM 548
             +R +GGTG+GL+I K LV  M GEIG  S    GS F F   F       S   +   +
Sbjct: 1073 TTRKYGGTGLGLAICKQLVTLMGGEIGVESQLGKGSKFWFEIPFAKQLQPVSFVEDCGLL 1132

Query: 549  NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---S 605
            NN+           + LVVD      K+  + + R G+QV+     +  L  I      +
Sbjct: 1133 NNR-----------RLLVVDDHATNRKIIYHQVSRWGMQVDQADRAVAALGMIVEACQQN 1181

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
            K  ++IL++ ++ E D     + +    K          ++  S +          +   
Sbjct: 1182 KPYDVILIDMQMPEMD----GMALGKQIKANSAIPPTPLIMLTSTNQRDEVQQAIKIGFA 1237

Query: 666  SVIMKPLRSSMLAASLQRAMGV-----GNKGNIRNWELPSMSLRH--------------L 706
            + ++KP++SS L  ++   +         K  +++ EL   +L H              +
Sbjct: 1238 AYLVKPVKSSRLLDTIMSVLKTPSQLEAEKLEVKSQELEKNNLDHSRNRNFTATQAQNSV 1297

Query: 707  LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQM 764
                +IL+ +DN VN KVA   L+  G        GK+  +LL  +P   +D   MD QM
Sbjct: 1298 STKTRILLAEDNLVNQKVALKQLQSLGYTADVAANGKEVLQLLKQIP---YDLILMDCQM 1354

Query: 765  PEMDGFEATK-IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 823
            P +DG E TK I R  E +F                 S     I+AMTA+ ++   + CL
Sbjct: 1355 PILDGLETTKEIHRWAESSF----------------ASGRRPVIIAMTANAMKEDKQMCL 1398

Query: 824  RSGMDGYVSKPFEAEQL 840
              GMD Y+SKP   EQL
Sbjct: 1399 DVGMDDYLSKPVMKEQL 1415


>gi|269140062|ref|YP_003296763.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202]
 gi|387868577|ref|YP_005700046.1| BarA sensory histidine kinase [Edwardsiella tarda FL6-60]
 gi|267985723|gb|ACY85552.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202]
 gi|304559890|gb|ADM42554.1| BarA sensory histidine kinase [Edwardsiella tarda FL6-60]
          Length = 919

 Score =  255 bits (652), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 188/613 (30%), Positives = 298/613 (48%), Gaps = 104/613 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    +M T L  TQ DY+ T + S   L+
Sbjct: 278 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVMKTPLSATQIDYLHTIERSANNLL 337

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F LR  +D+V +L +  + DKG+EL + + + VPE +
Sbjct: 338 TIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVRNDVPEHV 397

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +Q++TNL+GN+IKFTEKG+I + + L  +   ++E+E ++       +G  ++
Sbjct: 398 LGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIELRSQTAQAVELEVQVHD-----TGIGIS 452

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           +R                                            QS++F  F Q   S
Sbjct: 453 ER-------------------------------------------QQSQLFQAFRQADAS 469

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           I+R HGGTG+GL I++ L+  M G+I F S P+ GSTF F             H   ++N
Sbjct: 470 ITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGSTFWF-------------HIRLELN 516

Query: 550 NQ--PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
           +   P+S+  E  QG   L ++  P+ A+ +   ++   +QV          +Q+   S 
Sbjct: 517 HNAPPSSLPLERLQGQTLLYIESNPVAAQCTLDMLKVTPLQVTYCPQ----FAQVIPDSH 572

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
             +++L    V    TS++T  +     L      ++ L   S +   ++T      I S
Sbjct: 573 -YDILLFGLPV---KTSLTTESMQEKLSLALRLADRVILALPSHTLHDSDT-LKARGIRS 627

Query: 667 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
            + KPL SS L  +L     + N   +R  ++ S     L L   ++ VDDN  NLK+  
Sbjct: 628 CLFKPLASSRLLPAL-----MDNALPLRAPQVISPHGARLPL--TVMAVDDNPANLKLIG 680

Query: 727 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
           A L       +    G++A       H  D   MDIQMPEMDG   T+++R+   +    
Sbjct: 681 ALLGELVQHTLLCHSGEEALAAARERH-LDIILMDIQMPEMDGIRTTELLRQQPRHATT- 738

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
                              PI+A+TA  I    E  LR+GMD Y++KP +   L + ++R
Sbjct: 739 -------------------PIIAVTAHAINGERERLLRAGMDDYLAKPIDENMLRQLLNR 779

Query: 847 FF---PPIPDRSP 856
           +    P  P  +P
Sbjct: 780 YSGERPSAPTSAP 792


>gi|126175702|ref|YP_001051851.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
 gi|386342450|ref|YP_006038816.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS117]
 gi|125998907|gb|ABN62982.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
 gi|334864851|gb|AEH15322.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS117]
          Length = 1784

 Score =  255 bits (652), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 182/607 (29%), Positives = 304/607 (50%), Gaps = 89/607 (14%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++A+AA  AK  FLA +SHEIRTPMN ++GM  + + TELD  Q++YV   + + ++L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            S+IN++LD +K+E+GKL++++V F L  +L+D+  +FS K+  K +EL   ++  VP  L
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYL 1152

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GD  R  Q++ NLM N+IKFTE+G + +++ LVE+  D + +   +  S   L+    A
Sbjct: 1153 LGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQA 1212

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                  K FK+F Q                      DT                     S
Sbjct: 1213 ------KLFKSFTQ---------------------ADT---------------------S 1224

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+I K LV  M G+IG  S    GSTF FT            H S   +
Sbjct: 1225 TTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKL---------HIS---D 1272

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI---ASGSK 606
             Q   +  E +GM  LVVD       + R  ++ +G +V+ V    + +S+    A    
Sbjct: 1273 GQKLVLEQELEGMSVLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAISRCLLQAYEVA 1332

Query: 607  IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
            +I+  +   +  E    +     +  +           L+ ++ +     T  + +++  
Sbjct: 1333 LIDWKMPNMDGLETARQIQLQAQSQSQSQPQSHPQPKILMVSAHADHEFLTQIEQLALAG 1392

Query: 667  VIMKPLRSSMLAASLQRAMGVGNKGNI---RNWELPSMSLRHLLLGRKILIVDDNNVNLK 723
             I KP+ +S L   +  A  +G +G +   R  E  +  L   L G++IL+V+DN +NL+
Sbjct: 1393 YISKPISASRLLDGIMNA--IGREGILPVRRRTEELAPQLLVPLQGKRILLVEDNEMNLE 1450

Query: 724  VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
            VA+  L++ G  +     G+ A + L   H FD   MD QMP MDG++AT+ IR      
Sbjct: 1451 VASEFLEQVGIILSIATNGQIALDKLSQQH-FDLVLMDCQMPVMDGYQATQAIR------ 1503

Query: 784  NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
                +R E++          ++P++AMTA+ +    + C+R+GM+ +++KP E   LY+ 
Sbjct: 1504 ----KRPELA----------NLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQT 1549

Query: 844  VSRFFPP 850
            + ++  P
Sbjct: 1550 LLKYLAP 1556


>gi|118594848|ref|ZP_01552195.1| hypothetical protein MB2181_04230 [Methylophilales bacterium
           HTCC2181]
 gi|118440626|gb|EAV47253.1| hypothetical protein MB2181_04230 [Methylophilales bacterium
           HTCC2181]
          Length = 875

 Score =  255 bits (652), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 180/624 (28%), Positives = 303/624 (48%), Gaps = 92/624 (14%)

Query: 242 DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
           D     + K+ AE A   KS+FLA +SHEIRTPMNG++GM  + + T+LD  Q+DYV+  
Sbjct: 127 DITAAHQAKQLAEDAAKMKSEFLANMSHEIRTPMNGIIGMSHLALKTDLDPRQRDYVKKI 186

Query: 302 QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
           Q +GK L+ +IN++LD +K+E+GKL +E ++F++  ++ ++ ++   K  +K +EL  + 
Sbjct: 187 QQAGKHLLGIINDILDFSKIEAGKLSIEEITFDIDEMMSNIANMIGQKCSEKNLELIFHF 246

Query: 362 SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
              +P  LIGDP R  QI+ N   N+IKFTEKG + ++  ++E   + I           
Sbjct: 247 PQDLPHKLIGDPLRLSQILINYGNNAIKFTEKGEVIISAEILERDDEGI----------- 295

Query: 422 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 481
                           F  FN                     V DTG G+  E +S++F 
Sbjct: 296 ----------------FIKFN---------------------VSDTGIGLTKEQKSKLFQ 318

Query: 482 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 541
            F Q   S SR  GGTG+GL+I+K L G M GE+G  S    GSTF FTA F    + S 
Sbjct: 319 SFQQADTSTSRKFGGTGLGLAIAKQLAGLMGGEVGVESEYGKGSTFWFTAKFQLDKTISK 378

Query: 542 EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
               ++          +  G + LV+D       + +  +  + ++V +     + L Q 
Sbjct: 379 RVLFKE----------DLTGKRVLVIDDNEAARFIMKDMLTAMSLEVTLAKSGKEALRQA 428

Query: 602 ASGSKI---INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 658
              + +     +I V+  +      +   F   L++L  G  +   +L  + +S      
Sbjct: 429 VEANNMGQPFELIFVDYLMPPGMNGID--FTKALKEL-IGSSAPPCILVTAYASDELIHD 485

Query: 659 TDGVSIPSVIMKPLRSSMLAASLQRAMGV-GNKGNIRNWELPSMSLR-HLLLGRKILIVD 716
           +    I  VI KP+ +S+L  ++     +   + +I ++E  + +     L G +IL+ +
Sbjct: 486 SSIEGIEHVIPKPVNASLLFETILSIFNLFTTESSINSYEAGNKNKDIAALKGVRILLAE 545

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
           DN +N ++A   L   G  +     G++A +++   + +    MD+QMP MDG EAT+ I
Sbjct: 546 DNLLNQQIATEILGDEGLVIDVANNGQEAVDMV-NKNAYAMVLMDMQMPIMDGLEATRTI 604

Query: 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
           R                    +N SN  +P+LAMTA+   A  ++CL SGMD +++KP +
Sbjct: 605 R--------------------KNFSNDDLPVLAMTANASDADRQKCLASGMDAHITKPID 644

Query: 837 AEQLYREVSRFF-----PPIPDRS 855
              L+ E++++      PPI +++
Sbjct: 645 PVLLFTEIAKWIKPNNTPPITNKT 668


>gi|336309925|ref|ZP_08564898.1| sensory box histidine kinase/response regulator [Shewanella sp.
            HN-41]
 gi|335866485|gb|EGM71463.1| sensory box histidine kinase/response regulator [Shewanella sp.
            HN-41]
          Length = 1765

 Score =  255 bits (651), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 186/609 (30%), Positives = 299/609 (49%), Gaps = 107/609 (17%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++A+AA  AK  FLA +SHEIRTPMN ++GM  + + TELD  Q++YV   + + ++L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1089

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            S+IN++LD +K+E+GKL++E+V F L  +L+D+  +FS K+  K +EL   ++  VP  L
Sbjct: 1090 SIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPNVPRHL 1149

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GD  R  Q++ NLM N+IKFTE+G + +++ LVE+  D + +   +       SG  + 
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQNDDVTLRFSVRD-----SGIGLT 1204

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
            D   + K FK+F+Q                      DT                     S
Sbjct: 1205 DEQQA-KLFKSFSQ---------------------ADT---------------------S 1221

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+I K LV  M G IG  S    GSTF FT               Q  +
Sbjct: 1222 TTRKYGGTGLGLAICKQLVELMGGSIGVESQFGHGSTFYFTVKL------------QISS 1269

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             Q   +  E +GM  LVVD       + R  ++ +G  V+ V           SG + +N
Sbjct: 1270 GQKLVIGQELEGMSVLVVDDNATARDIMRTTLEGMGFLVDTVR----------SGDEAVN 1319

Query: 610  MILVEQEVWEKDTSVSTL--FVNNLRKLGCGFQ-------SKLFLLANSISSSRANTSTD 660
                     ++D +V+ +   + NL  L    Q           L+ ++ ++    T  +
Sbjct: 1320 RCT------QRDYAVALIDWKMPNLDGLDTARQILQQAKTPPRILMVSAHANQEFLTQIE 1373

Query: 661  GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRKILIVDDNN 719
             + +   I KP+ +S L   +  A+G      +R   E     L   L G++IL+V+DN 
Sbjct: 1374 QLGLAGYISKPISASRLLDGIMNALGRAGILPVRRHNEALDPQLLLPLKGKRILLVEDNE 1433

Query: 720  VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
            +NL+VA   L++ G  +     G+ A + LM    FD   MD QMP MDG++ATK +R+ 
Sbjct: 1434 MNLEVATEFLEQVGIILSIATNGQIALDKLM-QQSFDLVLMDCQMPVMDGYQATKALRQ- 1491

Query: 780  EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
                     R E++           +P++AMTA+ +    E C+R+GM+ +++KP E   
Sbjct: 1492 ---------RPELA----------ELPVIAMTANAMAGDREMCIRAGMNDHIAKPIEVNI 1532

Query: 840  LYREVSRFF 848
            LY+ + ++ 
Sbjct: 1533 LYQTLLKYL 1541


>gi|373957347|ref|ZP_09617307.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|373893947|gb|EHQ29844.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1437

 Score =  255 bits (651), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 188/598 (31%), Positives = 297/598 (49%), Gaps = 101/598 (16%)

Query: 252  KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
            +AE A+ AKS FLAT+SHEIRTPMNGV+GM  +L++T+L+  Q++Y  T    G +LV++
Sbjct: 916  EAEKANQAKSVFLATMSHEIRTPMNGVIGMASLLVETDLNTEQREYAETIITCGDSLVNV 975

Query: 312  INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
            IN++LD +K+ESGK+++E + F+LR  +++V+ LF  +   +G++L   I   VP  +IG
Sbjct: 976  INDILDFSKIESGKMDIEHIDFDLRHSIEEVMDLFGPRVALRGIDLIYEIDYNVPRQIIG 1035

Query: 372  DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
            D  R +Q++ NL+ N+IKFTEKG +FV + L+                            
Sbjct: 1036 DSLRLKQVLINLINNAIKFTEKGEVFVKISLL---------------------------- 1067

Query: 432  CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
                               K      I+L  +V DTG GIP E  S +F PF QV  S +
Sbjct: 1068 -------------------KQDDHGGIDLAFTVTDTGIGIPEEKLSNLFKPFSQVDSSTT 1108

Query: 492  RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 551
            R +GGTG+GL IS+ LV  M  EI   S    GS F+F        S   E ++ Q+   
Sbjct: 1109 RKYGGTGLGLVISERLVKLMGDEIWAESNFGKGSVFSF--------SIKAEISTAQLKRI 1160

Query: 552  PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINM 610
              SV+ +  +G K LVVD       + +  +Q+  +     S   + L+ +A+ +   N+
Sbjct: 1161 QVSVNMDGLEGKKILVVDDNQTNLTILKTQLQQWKLIPVTASSAKEALAILAADNS-FNL 1219

Query: 611  ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMK 670
            ++ + E+ + D          L K      S L ++  S     ++    G+   S+++K
Sbjct: 1220 VITDMEMPDMDGV-------GLAKAIKHVHSNLPVIMLSSIGDESSKKNPGL-FASILVK 1271

Query: 671  PLRSSMLAASLQRAMGVGNKGNIRNWELPS-------MSLRHLLLGRKILIVDDNNVNLK 723
            P + S L+ S++  +  GN+   ++ E  S        SL H L    IL+ +DN +N K
Sbjct: 1272 PAKQSQLSKSIRAEL--GNQREEKSTEEKSANTLEGGFSLLHPL---SILVAEDNLINQK 1326

Query: 724  VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
            +    L + G  +  V  G +  E +M    +D   MD+QMPEMDG E T++IR+     
Sbjct: 1327 LIQRILNKMGYTIEIVANGYEVLEQMMLK-TYDVILMDVQMPEMDGLETTQLIRK----- 1380

Query: 784  NNRIRRGEVSIEAYENVSNFHVP-ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                               F  P I+AMTA+ +    E C+ +GMD Y++KP + ++L
Sbjct: 1381 -----------------GKFKQPFIIAMTANAMLEDKEICISAGMDDYIAKPMKLDEL 1421


>gi|406889705|gb|EKD35823.1| Hpt sensor hybrid histidine kinase, partial [uncultured bacterium]
          Length = 735

 Score =  255 bits (651), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 185/628 (29%), Positives = 285/628 (45%), Gaps = 112/628 (17%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           + + K  AE + + KSQFLA +SHEIRTPMN +LG  D+ + T+      DY+     + 
Sbjct: 175 LYKAKAAAERSAITKSQFLAHMSHEIRTPMNAILGFSDLALQTDNPSDHFDYLGKINTAS 234

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            +L+ +IN +LD +K+E+GKL +E V F+LR +L+ + +L S + ++ G+E    I+   
Sbjct: 235 YSLLGIINAILDLSKIEAGKLTVENVDFDLRELLEKLATLISLRCEESGIEFYFNIAPET 294

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
           P  L GD  R  Q++TNL+ N+ KFTE G+I + +                         
Sbjct: 295 PFALRGDALRLSQVLTNLITNAFKFTESGYIVLHI------------------------- 329

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                               S  P +   +D + L  SV+DTG GI  E +  +F PF Q
Sbjct: 330 --------------------SPDPGRVIGSDRVILRFSVQDTGTGITKEQEENLFQPFTQ 369

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
              SI+R  GGTG+GL+I K LV  M G I        GSTF FT  F        E + 
Sbjct: 370 ADSSITRKFGGTGLGLTICKSLVAIMNGSIWLERNDTPGSTFCFTVPFAR-----KEGHD 424

Query: 546 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV-------EVVSDQLQCL 598
           +   + P  V+    G + +V+  RP +A    Y +   GI+V       EVVS   + L
Sbjct: 425 RDFYSAPGMVA----GKRMIVMSERPQKASELSYQLAAFGIEVCQALTVQEVVSALGEQL 480

Query: 599 SQIASGSKIINMILVEQEVWEKDTSVS---------TLFVNNLRKLGCGFQSKLFLLANS 649
            Q      I++  +  Q   E    +           L +  +++L   F +        
Sbjct: 481 LQNPYEIVIVDCEIYSQRWLEIPGKIKAAAAAAVAPALILTGMQRLSTHFSAH------- 533

Query: 650 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE----LPSMSLRH 705
                   + +G      + KP+  + L  ++   +G  N   + + +     P  SL H
Sbjct: 534 --------NINGCDY--FLSKPITPARLLDAILTVLGADNPDPVASLDKRSAAPLPSLDH 583

Query: 706 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQM 764
            LLG ++L+ +DN +N ++    L   G A   V+ G +A ELL      FD   MDIQM
Sbjct: 584 -LLGNRVLLAEDNKINQQITLGFLDFAGLATTIVQNGAEAVELLEREGTSFDLVLMDIQM 642

Query: 765 PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 824
           P MDG+ AT+ IR+M                         +PI+A+TA  +Q   ++CL 
Sbjct: 643 PVMDGYSATEAIRKMA-------------------APTGKIPIIALTAHAMQEEKQKCLD 683

Query: 825 SGMDGYVSKPFEAEQLYREVSRFFPPIP 852
            GM+ Y++KP   EQL+  + R+ P  P
Sbjct: 684 RGMNDYITKPINPEQLFATLGRYLPCRP 711


>gi|343497047|ref|ZP_08735129.1| sensory box sensor histidine kinase/response regulator [Vibrio
            nigripulchritudo ATCC 27043]
 gi|342820169|gb|EGU54997.1| sensory box sensor histidine kinase/response regulator [Vibrio
            nigripulchritudo ATCC 27043]
          Length = 1322

 Score =  255 bits (651), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 190/628 (30%), Positives = 304/628 (48%), Gaps = 91/628 (14%)

Query: 221  IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
            I  +VG     T  +  ++E D   ++E K+ A+     K  FLA +SHEIRTPMN ++G
Sbjct: 559  IMGIVGTFMDVTETK--RLERD---LIESKESADKLSKIKGDFLANMSHEIRTPMNAIMG 613

Query: 281  MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
            M  +++ ++L   Q+DYV     S K L+ +IN++LD +KVE+GKL++E   FNL  +LD
Sbjct: 614  MTHLVLSSDLGEKQRDYVEKIDYSSKQLLGIINDILDFSKVEAGKLQIENTDFNLDKVLD 673

Query: 341  DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
            ++ S+ S K+++KG+EL   +S  +P  LIGDP R  Q++ NL GN++KFT+ G + ++ 
Sbjct: 674  NLASVLSVKAENKGIELIFNVSPNIPNQLIGDPLRLGQVLINLAGNAVKFTDTGEVIIS- 732

Query: 401  YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 460
                       V  EL + K+ +                                    L
Sbjct: 733  -----------VSEELRNEKSAV------------------------------------L 745

Query: 461  IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520
              SVEDTG G+  E  S +F  F Q   S +R +GGTG+GLSIS+ L+  M GEI   S 
Sbjct: 746  KFSVEDTGIGMTPEQMSGLFQAFSQGDTSTTRKYGGTGLGLSISQQLIQLMGGEIMVSSH 805

Query: 521  PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 580
               GS F F      G     +                 Q  +ALV+D       +    
Sbjct: 806  YGRGSHFWFELELDIGEERPTKERYLIT-----------QHKRALVIDDNDTARLIVASM 854

Query: 581  IQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640
            +  +  +V+V S+       +    K  +++LV+ ++ E D  V T  + ++RK      
Sbjct: 855  LSDMMFEVDVASNASDAFHILEQAQKQYDLLLVDWQMPEMD-GVQT--IEHIRKHDLSPG 911

Query: 641  SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG-NKGNIRNWELP 699
            SK+ L+    +    N    G  I  +++KP+  S L  ++   +G   +K  I+     
Sbjct: 912  SKMILITAYGNQLDFNDQY-GHIIDGLVLKPINPSNLLDTIVDTLGSYISKEEIKEAA-E 969

Query: 700  SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 759
            S  + H + G +IL+V+DN  N ++A+  L+  GA V     G +A ++L   H FD   
Sbjct: 970  SPEVVHDISGTRILLVEDNITNQEIASTILENEGAQVSIANHGIEALDML-DNHTFDVVL 1028

Query: 760  MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
            MD+QMP MDG  ATK IR++                 Y++ +   +P+LAMTA+ ++   
Sbjct: 1029 MDMQMPVMDGLTATKEIRKI-----------------YDDKT---LPVLAMTANAMREDV 1068

Query: 820  EECLRSGMDGYVSKPFEAEQLYREVSRF 847
            E C+  GM+ +++KP     L  ++S F
Sbjct: 1069 ESCMNVGMNAHIAKPIHVPSLLAKISEF 1096


>gi|398985649|ref|ZP_10691146.1| PAS domain S-box [Pseudomonas sp. GM24]
 gi|399014510|ref|ZP_10716800.1| PAS domain S-box [Pseudomonas sp. GM16]
 gi|398110776|gb|EJM00672.1| PAS domain S-box [Pseudomonas sp. GM16]
 gi|398153806|gb|EJM42299.1| PAS domain S-box [Pseudomonas sp. GM24]
          Length = 1459

 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 180/600 (30%), Positives = 288/600 (48%), Gaps = 92/600 (15%)

Query: 260  KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
            KS+FLA +SHEIRTPMN ++GM  + + T LD  Q++Y+     S + L+ +IN++LD +
Sbjct: 737  KSEFLANMSHEIRTPMNAIIGMSHLALRTHLDNRQRNYIEKVHRSAENLLGIINDILDFS 796

Query: 320  KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
            K+E+G++ LE   F L  +LD   ++   K++DKG+EL   I   +P  LIGDP R  Q+
Sbjct: 797  KIEAGRMSLEQAPFRLEDVLDSFAAMIGLKTEDKGLELLFQIPPDLPTALIGDPLRLGQV 856

Query: 380  ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
            + NL  N+ KFTE G I V V  V    + +++                    H W    
Sbjct: 857  LINLGNNAAKFTEHGDIVVGVEEVGTHNEHVQL--------------------HFW---- 892

Query: 440  TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
                                    V DTG G+ +E  SR+F  F Q   SI+R +GGTG+
Sbjct: 893  ------------------------VRDTGIGMTVEQCSRLFQSFSQADSSITRKYGGTGL 928

Query: 500  GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSV--SS 557
            GLSISK LV  M G I   S P +GSTF F               + Q   QP  +  + 
Sbjct: 929  GLSISKKLVELMAGRIWVESQPGVGSTFHFQVQL-----------AVQQGVQPRRMFKAG 977

Query: 558  EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKIINMILVE 614
            E  GM+ LVVD      ++     +  G++V+V       L+ L+     +   N++L++
Sbjct: 978  ELLGMRVLVVDDNASAREILSGMARSFGLEVDVAQSGDLALRMLADAEHKALPYNLVLMD 1037

Query: 615  QEVWEKD--TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL 672
              +   D   +VS +   +L +      S + + A     +R      G+ +P V+ KP+
Sbjct: 1038 WRMPGMDGMEAVSKMHSASLMRT----PSVIMITAFGREEAREEAERQGIQLPVVLTKPV 1093

Query: 673  RSSMLAASLQRAMGVGNKGNIRNWE--LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLK 730
              S L  ++   +G   +G  R  E  L + +    L G ++L+V+DN++N ++A+  L+
Sbjct: 1094 TPSSLLEAIGVVLGREPQGETRTGERSLHNANTVASLNGARLLLVEDNDLNQELASELLE 1153

Query: 731  RYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790
              G  +     G++A ++L     FD   MD QMP MDG+ AT+ IR+ +  FN      
Sbjct: 1154 SVGIRLRLATHGQEALDILAEDGDFDGVLMDCQMPVMDGYTATRQIRQ-QPRFNT----- 1207

Query: 791  EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
                          +P++AMTA+ +    E  L  GM+ ++SKP   E ++  ++++  P
Sbjct: 1208 --------------LPVIAMTANAMDGDRERALECGMNDHISKPLNVETMFATLAKWIKP 1253


>gi|254442851|ref|ZP_05056327.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257159|gb|EDY81467.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 795

 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 191/615 (31%), Positives = 284/615 (46%), Gaps = 98/615 (15%)

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           EL ++A+AA+  KS FLA +SHEIRTPMNG+LGML++L D +    Q D + TAQ S K+
Sbjct: 269 ELARQAKAANETKSSFLANMSHEIRTPMNGILGMLNLLEDMDNPADQADLILTAQDSAKS 328

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L+ ++NE+LD +K+E+  +++E   F+LR  +     L S  + DKG+EL   I+  VP 
Sbjct: 329 LLEIVNEILDFSKIEANAIDIEKTEFDLRDSIYGATDLVSLTAHDKGLELVAQIASDVPR 388

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 427
            LIGDP R RQ+  NL+GNS+KFT++G + + V                           
Sbjct: 389 YLIGDPLRIRQLCINLLGNSLKFTKEGTVMLAVS-------------------------- 422

Query: 428 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487
                      K   Q  + +  +   +D          TG GIP E    +F PF QV 
Sbjct: 423 -----------KAAQQPRNATRLRFEISD----------TGMGIPPEKVDTLFDPFSQVD 461

Query: 488 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 547
            S +R  GGTG+GLSI K L   M GEIG  S+   GS F F       SS S    S  
Sbjct: 462 SSTTRNFGGTGLGLSICKKLAELMSGEIGVTSVVGEGSVFWFEIEVEEDSSKSKIEKSHY 521

Query: 548 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG--- 604
            N Q           + +  +     AK     +    +  +VVS     LS I  G   
Sbjct: 522 SNGQTR---------RPIFFESHKDVAKAIEQTLSAYAVSTQVVSQGESLLSMIEEGLRS 572

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS--TDGV 662
            +  + + ++  + E         V    KL  G      +  +SI +SR   S  T  +
Sbjct: 573 GRAFDRVFIDTRIGESKAEALAQRV----KLTAGSSKPGLVAISSIGASRPEGSHFTLQL 628

Query: 663 SIP----SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
           S P    S++   L  S LA+  +    VG+ G ++                ++L+ +DN
Sbjct: 629 SKPLKEESLLQAVLDKSSLASVEKERRKVGSVGKVK---------VDFNTSARVLVAEDN 679

Query: 719 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
            VN KV    L R G     V  GK+A + L    +FD  FMD QMP ++GFEAT+ IR+
Sbjct: 680 KVNQKVIRMMLGRAGFDCELVNDGKEALDRLR-DEEFDLVFMDCQMPILNGFEATEEIRK 738

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                               + S   VPI+A+TA+ ++   E+CL++GM+ +++KP +  
Sbjct: 739 -------------------SSGSQSGVPIIALTANALKGYEEQCLQAGMNDFMTKPIDPN 779

Query: 839 QLYREVSRFFPPIPD 853
            L   + ++ P  P+
Sbjct: 780 DLRAMLGKWAPKNPN 794


>gi|260769480|ref|ZP_05878413.1| signal transduction histidine kinase-like protein [Vibrio furnissii
            CIP 102972]
 gi|260614818|gb|EEX40004.1| signal transduction histidine kinase-like protein [Vibrio furnissii
            CIP 102972]
          Length = 1268

 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 188/616 (30%), Positives = 303/616 (49%), Gaps = 89/616 (14%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + E K+ AE A+ AKS FLA +SHE+RTPMN +LG+L +  +T+L+  Q+DY+   Q + 
Sbjct: 519  LAEAKELAEQANRAKSDFLANMSHELRTPMNAILGLLQIAQNTDLNKQQRDYLNKTQNAA 578

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            ++L+ L+N++LD +KVE+GK+E+E   F+L  ++ +   L S   Q K +E+   I + V
Sbjct: 579  QSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMHETGILLSSNLQHKHLEIIYQIDEDV 638

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  LIGD  R RQI+ NL GN+IKFTE G + V++            +TE   S N    
Sbjct: 639  PTYLIGDSLRLRQILLNLAGNAIKFTEAGEVKVSI------------QTE---SHN---- 679

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                DRC                           L ++V DTG G+  E Q  +F  F Q
Sbjct: 680  ---GDRC--------------------------VLRITVSDTGIGMTEEQQRIVFQGFSQ 710

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               SISR +GGTG+GLSI K+LVG M+G +   S   +GS F+FT   G       E   
Sbjct: 711  AESSISRRYGGTGLGLSIVKHLVGLMEGSVQVKSEQGVGSEFSFTVNLG---CVDEERQP 767

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIA 602
            +     PN       G++ L+V+       +    +QRLG  V  V+D    L  + Q  
Sbjct: 768  EPSAELPN-------GLQVLIVEDNNTARLIFDDLLQRLGCHVTAVADAEHALDTIEQAD 820

Query: 603  SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
            +  +  +++ ++   W+           ++R      ++ L ++A +      +   +  
Sbjct: 821  ANGQPFDLLFID---WKLPGMDGLSLTQSVRHGMALSKTPLVVMATAFGRELLDEHLEET 877

Query: 663  S--IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
               + ++++KP+   M+  +L     V N+   R+ +L   +    LLG K+L+V+DN  
Sbjct: 878  QSLLDALLVKPVTPDMVKNTLLDV--VNNRNQPRDEQLGYRAQSQALLGLKLLLVEDNPT 935

Query: 721  NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
            N  VA   L + GA +V  E G +A   L    +F    MD+QMP+MDG+E T+ IR+M 
Sbjct: 936  NRLVATELLSQQGATIVEAESGVEALAAL-DQQEFSLVLMDVQMPDMDGYETTRRIRQMA 994

Query: 781  HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
            H  +                    +PILAMTA+ +      CL +GM+ +++KPF   ++
Sbjct: 995  HFAD--------------------LPILAMTANAMPEDKVACLNAGMNDHIAKPFHIGEV 1034

Query: 841  YREVSRFFPPIPDRSP 856
              ++ ++   +   +P
Sbjct: 1035 VEKILQYTSAVQQEAP 1050


>gi|378763933|ref|YP_005192549.1| putative two-component hybrid sensor and regulator [Sinorhizobium
           fredii HH103]
 gi|365183561|emb|CCF00410.1| putative two-component hybrid sensor and regulator [Sinorhizobium
           fredii HH103]
          Length = 989

 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 190/625 (30%), Positives = 292/625 (46%), Gaps = 89/625 (14%)

Query: 233 VNRIAKVEEDYHGMMELKKK-------AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 285
             R AK+E+    + + +++       AE A +AKS+FLA +SHEIRTPMNGV+G+ ++L
Sbjct: 312 AKRTAKLEQRTEQLRKSREELERARDVAEQASIAKSEFLANMSHEIRTPMNGVIGIAELL 371

Query: 286 MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 345
             TEL   Q+ YV     S + L+ LIN++LD +K+E+G+LELE + F LR  L D L  
Sbjct: 372 EGTELSEQQRRYVSIILHSAETLMDLINDILDFSKIEAGRLELETIPFMLRDTLGDTLQT 431

Query: 346 FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 405
            + ++ DKG+ELA +I   VP+ L+GDP R RQII NL+GN+IKFTE G + V V LV E
Sbjct: 432 LAKRAADKGLELACHIPPEVPDHLMGDPTRLRQIIVNLVGNAIKFTENGEVVVDVTLVGE 491

Query: 406 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 465
                 ++ ++   ++T  G P A                                    
Sbjct: 492 GDQGARLQFDV---RDTGIGIPAAQ----------------------------------- 513

Query: 466 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 525
                     Q RIF  F Q   S +R +GGTG+GL+I+  L  +M G +   S P +GS
Sbjct: 514 ----------QERIFEAFAQADTSTTRQYGGTGLGLAIAAQLAEKMGGPMQLDSKPGVGS 563

Query: 526 TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
            FTF A F            ++         +E +G + LVVD      ++    +   G
Sbjct: 564 VFTFAADFVLAPEAQKARPVRE---------AELRGRRVLVVDDNATNRQILEEIVVNWG 614

Query: 586 IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 645
           +   V  D    L+ +   S  +  + +   +  +   +S   +    +L    +    +
Sbjct: 615 MIPIVAVDGAAALNALEQSSGALPDLALLDVMMPR---MSGFELAACMRLRPALKETRIV 671

Query: 646 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH 705
           + +S            + +  +++KP++ S L  ++  A+G   + +          LR 
Sbjct: 672 MMSSAGRPSDEALLRKLDVSRLLVKPVKQSDLLNAITNALGFSMREDEVEGSASPARLR- 730

Query: 706 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQM 764
             LG  +L+ +D  VN +VA   L + G  V  V  G++A E     H  +D   MD+ M
Sbjct: 731 TGLGLTVLLAEDGAVNRQVAVDLLTKRGHRVEAVGNGQEAVE--AAEHGSYDLVLMDVHM 788

Query: 765 PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 824
           P MDG  AT  IR +      R+                  PI+A+TA    A  E CL 
Sbjct: 789 PVMDGLAATAAIRALARAECARL------------------PIIALTASATPADRERCLA 830

Query: 825 SGMDGYVSKPFEAEQLYREVSRFFP 849
           +GMDGYV+KPF A +L+R V ++ P
Sbjct: 831 AGMDGYVTKPFRASELFRVVEQYQP 855


>gi|373487149|ref|ZP_09577818.1| PAS sensor protein [Holophaga foetida DSM 6591]
 gi|372010031|gb|EHP10644.1| PAS sensor protein [Holophaga foetida DSM 6591]
          Length = 1464

 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 188/619 (30%), Positives = 299/619 (48%), Gaps = 106/619 (17%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            M E K+ AE A  AK+ FLA +SHEIRTPMN ++GM  + + TEL+  Q+DYV+  Q SG
Sbjct: 727  MQEAKEIAEGASQAKADFLANMSHEIRTPMNAIIGMAHLALKTELNPRQKDYVKKIQQSG 786

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            + L+ +IN++LD +K+E+GKL +E    +L  ++++V +L + K+  KG+EL   +   V
Sbjct: 787  QHLLGIINDILDFSKIEAGKLSVELTEVHLDKVMENVSNLITEKATAKGLELVFDVGPGV 846

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  L+GDP R  QI+ N   N++KFTE+G I +   LVE++                   
Sbjct: 847  PNDLMGDPLRLGQILINYANNAVKFTEQGEIDIRTRLVEDL------------------- 887

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                       G + F                  L   V DTG G+  E + R+F  F Q
Sbjct: 888  -----------GSEVF------------------LRFEVRDTGIGLTEEQKGRLFQSFQQ 918

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               S +R +GGTG+GL+ISK L   M G +G  S+P  GSTF FTA  G G         
Sbjct: 919  ADSSTTRKYGGTGLGLAISKKLAVLMGGNVGVDSLPGQGSTFWFTARLGKGKP------R 972

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
            + +  +P+      +G + LVVD      + +R+      + V+++      ++++ASG+
Sbjct: 973  RALVPRPD-----LRGKRMLVVDDN----ENARH------VLVDILISMSFQVNEVASGA 1017

Query: 606  KIINMILVEQ------EV----WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 655
            + +  I          EV    W+          ++++ LG     +L ++  +      
Sbjct: 1018 EALAAIRRAAASGQPYEVVFLDWQMPRMDGLEAAHHIKALGLDTAPRLIMV-TAYGREEV 1076

Query: 656  NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV---GNKGNIRNWELPSMSLRHLLLGRKI 712
                + V +  V++KP+  SML  S+ R +G      +       LP+      L G K+
Sbjct: 1077 LKGAETVGVEDVLIKPVSPSMLFDSIMRVLGAVLEEGEAGEGEGPLPTDEAVLQLRGLKV 1136

Query: 713  LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEA 772
            L+V+DN+ N +VA   L   G  V   E G  + E +     +D   MD+QMP MDG  A
Sbjct: 1137 LLVEDNDFNQQVATELLADAGIKVDVAENGLISLEKVR-TGTYDLVLMDMQMPVMDGITA 1195

Query: 773  TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832
            T  +RE  H                       +PI+AMTA+ +QA  + C  +GM+ Y+ 
Sbjct: 1196 TVRLREEGH----------------------RMPIIAMTANAMQADRDRCTSAGMNDYLV 1233

Query: 833  KPFEAEQLYREVSRFFPPI 851
            KP + ++++R ++R+ P I
Sbjct: 1234 KPIDPDEMFRVLARWQPRI 1252


>gi|171059399|ref|YP_001791748.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776844|gb|ACB34983.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1255

 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 188/591 (31%), Positives = 281/591 (47%), Gaps = 88/591 (14%)

Query: 253  AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
            AEAA  AKSQF+A++SHEIRTPMNG+LGM ++L+ T LD  Q+ + +    SG+ L+ +I
Sbjct: 590  AEAASQAKSQFMASMSHEIRTPMNGILGMTELLLGTRLDDRQRRFAQAVYRSGENLLEII 649

Query: 313  NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
            N+VLD +K+E+G+LEL    FNLR +++D L L + ++ +KG+EL+   +  VP  ++ D
Sbjct: 650  NDVLDFSKIEAGRLELAPTDFNLRTLIEDTLDLLAPRAHEKGLELSFRETGDVPANVLAD 709

Query: 373  PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 432
            P R RQ++TNL+ N++KFTE G                EV  +L       +G P     
Sbjct: 710  PLRLRQVLTNLVANAVKFTEHG----------------EVTVDLRFLPRPRAGAPAM--- 750

Query: 433  HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492
                                       L   V DTG G+  E   R+FT F Q    ++R
Sbjct: 751  ---------------------------LEFRVRDTGIGMAAELLPRLFTAFTQAHGGMAR 783

Query: 493  THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 552
             +GGTG+GL+IS+ LV  M G+I  VS P +GS F FT  F  GS   +E  + ++   P
Sbjct: 784  RYGGTGLGLAISRQLVELMGGQIDVVSQPGVGSEFRFTMTFEPGSGRDSE--AGELTALP 841

Query: 553  NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKIIN 609
             +        + LVV+       V  + +   G+ V +  D    L+ L    +     +
Sbjct: 842  QA--------RVLVVEDHATNRTVLDHLLSAWGLSVTLAVDGQAALELLRNRPADQPDFD 893

Query: 610  MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
            + LV+   W         F   LR  G    ++L +L+++ +   A  + D   +   I 
Sbjct: 894  IALVD---WRMPRLDGIGFAKALRAEGLAPGTQLVMLSSASAPDDARLAQDAGFV-RFIH 949

Query: 670  KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 729
            KP+R + L  ++   +GV      R  E     +R      ++L+V+DN VN +V    L
Sbjct: 950  KPVRKAELRQAI---LGVTAS---RGVEPVDAQVRA-----QVLVVEDNPVNQEVMGQML 998

Query: 730  KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789
             R G  V           +L      D   MDIQMP MDG EA            + IRR
Sbjct: 999  HRLGCRVRVAGTALDGLRVLC-EQPVDLVLMDIQMPGMDGIEAL-----------HWIRR 1046

Query: 790  GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
            GE S       +N   P++A+TA+ +    E  L  G D Y+SKP+   QL
Sbjct: 1047 GESSRFKLRTPANL--PVVAVTANALDGDEERFLGFGFDAYLSKPYRQSQL 1095


>gi|157780820|gb|ABV71919.1| hypothetical protein [Brassica rapa subsp. pekinensis]
          Length = 323

 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 144/316 (45%), Positives = 199/316 (62%), Gaps = 27/316 (8%)

Query: 554 SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQ--------IASGS 605
           ++ S F+GM+A+VVD +P+RA V+RYH++RLGI V+V++     +S         + SG+
Sbjct: 17  NLPSSFRGMRAIVVDAKPVRAAVTRYHMKRLGISVDVMTSLRTAVSTASGRNGSPLPSGT 76

Query: 606 KIINMILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQS-KLFLLANSISSSRANTSTDGV 662
             ++MILVE++ W   +D       +N+        ++ KL L A +I++S  + +    
Sbjct: 77  TKLDMILVEKDSWISTEDIDAEIRQMNSRTNGNVRHKTPKLALFATNITNSEFDRAKSAG 136

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLLGRKILIVDDNNVN 721
              +VIMKPLR+SM+ A LQ+ + +  K   ++ E  S  +L+ LL G+KIL++DDN VN
Sbjct: 137 FADTVIMKPLRASMIGACLQQVLEL-RKARQQHPEGSSPATLKSLLTGKKILVIDDNMVN 195

Query: 722 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
            +VAA  LK++GA VVC E G+ A  LL  PH FDACFMDIQMP+MDGFEAT+ IR ME 
Sbjct: 196 RRVAAGALKKFGAEVVCAESGQVALGLLQIPHSFDACFMDIQMPQMDGFEATRQIRMMEK 255

Query: 782 NFNNRIRRGEVSIEAYENVS-NFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                        EA E     +H+PILAMTADVI ATYEECL+SGMDGYVSKPFE E L
Sbjct: 256 -------------EAKEKTKLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENL 302

Query: 841 YREVSRFFPPIPDRSP 856
           Y+ V++ F   P   P
Sbjct: 303 YKSVAKSFKANPISDP 318


>gi|433772826|ref|YP_007303293.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
 gi|433664841|gb|AGB43917.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
          Length = 1516

 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 192/640 (30%), Positives = 289/640 (45%), Gaps = 125/640 (19%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + E +++A  AD AKS+FLA +SHEIRTPMNGVLGM ++L  + LD  Q+ +      SG
Sbjct: 952  LSEARRRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDPKQKTFTDIIVKSG 1011

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
             AL+++IN++LD +K+++G+L L+   FNL   ++DV +L S ++++K +EL V I  R+
Sbjct: 1012 NALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRIEPRL 1071

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
                IGD GR RQI+TNL+GN++KFT++GH+ V V                     T   
Sbjct: 1072 ESLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDV---------------------TGER 1110

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
             P   R                            L +SV DTG GIP E    +F  F Q
Sbjct: 1111 VPTGTR----------------------------LTISVTDTGIGIPEEKLKLVFEKFSQ 1142

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
            V  S +R H GTG+GL+I+  LV  M G+IG  S    GSTF FT         S +  +
Sbjct: 1143 VDTSSTRRHEGTGLGLAITSRLVDLMGGDIGVESAEGKGSTFWFTVTLPGAGQQSGQRIT 1202

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL---GIQVEVVSDQLQCLSQIA 602
                  P  V+    G + L+VD   +   +    +          E  ++ L+ L   A
Sbjct: 1203 ------PVDVT----GARVLIVDDNAVNRAILTEQMTSWTFDSCAAESGAEGLKVLIAAA 1252

Query: 603  SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
            +    ++ ++++ ++ E   +     V N      G      ++  S+  S ANTS   +
Sbjct: 1253 AYGVAVDCVVLDYQMPEMSGAEMARIVRNTE----GLADTPIIMLTSVDQSLANTSYRDL 1308

Query: 663  SIPSVIMKPLRSSM----LAASLQRAMGVGNKGNIRNW---------------------- 696
             I + ++KP RSS+    L A++QR     +   ++                        
Sbjct: 1309 GIDAQLIKPARSSVLLETLVATIQRHRHATSGHAVQPLTGEAPEASRPPPLAPSEQRAQL 1368

Query: 697  -------ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 749
                    LP+ +  H L    IL+ +DN VN  V    L   G     V  G+KA +  
Sbjct: 1369 QPPQVRPRLPATAGGHRL---DILVAEDNEVNQMVFTQILGETGYGFEIVGNGRKALDAF 1425

Query: 750  MPPHQFDAC--FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPI 807
                  + C   MD+ MPEM G EAT  IR +E                    +  HVPI
Sbjct: 1426 ---GTLNPCMILMDVSMPEMSGLEATAAIRLLEQE------------------TGTHVPI 1464

Query: 808  LAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
            + +TA  ++   E CL +GMD Y+ KP     L  +V R+
Sbjct: 1465 VGVTAHALKGDRERCLEAGMDDYLPKPISPRALLEKVERW 1504


>gi|323495545|ref|ZP_08100619.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323319426|gb|EGA72363.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 1198

 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 183/657 (27%), Positives = 314/657 (47%), Gaps = 96/657 (14%)

Query: 209 LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMME--------LKKKAEAADVAK 260
           LL +  S  I    ++ G IF  T+  +  +    H  +E         + +A +A+ AK
Sbjct: 422 LLIVEDSGNITTKMAIGGGIFLITLLLLGLLANKSHAALERFANKLAIARDEANSANRAK 481

Query: 261 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 320
           S FLA +SHEIRTPMN ++GM  + + T+L   Q++Y+   + S  +L+ LIN++LD +K
Sbjct: 482 SDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQRNYIHKVKLSADSLLGLINDILDFSK 541

Query: 321 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 380
           +E+GKL++E V F L  +LD++ +L   ++ ++G+EL ++I   VP  L+GDP R  Q++
Sbjct: 542 IEAGKLDIEQVDFQLENVLDNISNLVGLRASERGLELLIHIERDVPTALVGDPLRLGQVL 601

Query: 381 TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 440
            NL  N++KFTE+G I +TV                           VA+R         
Sbjct: 602 INLSNNAVKFTERGEIKITV--------------------------SVAER--------- 626

Query: 441 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 500
                        S + I L   V D+G G+  E   ++F+ F Q   S +R +GGTG+G
Sbjct: 627 -------------SGENIRLKFRVSDSGIGMTPEQTQKLFSKFTQADSSTTRKYGGTGLG 673

Query: 501 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 560
           L+ISK L   M G+I   S   +GSTF+FT              SQ +  +   V  E  
Sbjct: 674 LAISKELSQLMGGDIQVESEAGVGSTFSFTI---------QTQISQALKQEQTVVPKEIG 724

Query: 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSKIINMILVEQEV 617
            +K L+VD       +    +  L ++ + VS   D L  L+  AS     ++++ +   
Sbjct: 725 KLKVLIVDDNASARIILEDILLSLKLECQQVSNADDALTALTTAASDGAPFDLLISD--- 781

Query: 618 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG--VSIPSVIMKPLRSS 675
           W+         + ++++     Q    L+  +      + +     + +P ++ KP+ +S
Sbjct: 782 WQMPGKDGIDLIESMQQAFSSVQQPKVLMLTAYGREELSEALQKRHIELPGLLDKPVTAS 841

Query: 676 MLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNVNLKVAAAGLKRYG 733
            L  ++    GV N+   R      + L ++  L G ++L+V+DN +N ++A   L+   
Sbjct: 842 HLFDAIIALYGVENERLSRGEVEEQLQLANVQSLAGAQLLLVEDNEINQELATELLEGQQ 901

Query: 734 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVS 793
             +   E G++A + L    +FD   MD QMP MDG+EAT+ IR                
Sbjct: 902 IHITIAENGQQAVD-LYQTQEFDGILMDCQMPIMDGYEATEYIR---------------- 944

Query: 794 IEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
                 + N  +PI+AMTA+V++   E+   SGM+  ++KP +   ++  ++++  P
Sbjct: 945 ----HQLGNSQIPIIAMTANVMERDKEKAQASGMNDIIAKPIDVGSMFSTLAKWITP 997


>gi|406835512|ref|ZP_11095106.1| PAS domain S-box [Schlesneria paludicola DSM 18645]
          Length = 925

 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 184/591 (31%), Positives = 297/591 (50%), Gaps = 90/591 (15%)

Query: 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 318
           +KS+FLA +SHEIRTPMNGV+GM ++++DT+L   Q++YV+  + S  AL+++IN++LD 
Sbjct: 268 SKSEFLANMSHEIRTPMNGVIGMTELVLDTDLTTEQREYVQAVKTSADALLTVINDILDF 327

Query: 319 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 378
           +K+E+GKL+L+ +  +LR ++ + L   + ++ +KG+EL   I+D VP+  + DP R RQ
Sbjct: 328 SKIEAGKLDLDPIQLDLREMISNTLRPLAMRAHEKGLELTCDIADEVPDLHMADPVRLRQ 387

Query: 379 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 438
           I+ NL+GN++KFT +G + +TV +   + D+  +  ++S   +T  G P        K F
Sbjct: 388 ILINLIGNAVKFTAQGEVGLTVTVESHLNDAAVLHFDVS---DTGIGIPPEKLA---KVF 441

Query: 439 KTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 497
           + F+Q DGST                                           +R  GGT
Sbjct: 442 EPFSQADGST-------------------------------------------TRRFGGT 458

Query: 498 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS 557
           G+GL+IS  LV  M G +   S    GS F FTA  G   +  ++       N P   S 
Sbjct: 459 GLGLTISAQLVEMMGGRVWIESHVGRGSHFHFTASLGRAPAVPSK-------NLPCK-SG 510

Query: 558 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI---ASGSKIINMILVE 614
              G+ ALVVD      ++ +  +++ G+Q  +V    Q LS I   A  + +  +ILV+
Sbjct: 511 NLNGLSALVVDDNATNRRILQEMLKKWGMQPTLVDSGSQALSAISHAADTNSMFQLILVD 570

Query: 615 QEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS-TDGVSIPSVIMKPLR 673
            E+   +    +  +   R   C   SK  ++  +  + R + +    + I S ++KP+ 
Sbjct: 571 SEMPGMNGFALSEQIKQAR--AC---SKAIVMMLTSDNQRGDAARCRDLGIKSHLVKPIM 625

Query: 674 SSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----KILIVDDNNVNLKVAAAGL 729
           ++ L  S+  AM +    ++  + + +         R    +IL+ DDN +N KVA   L
Sbjct: 626 AADLLRSILIAMELAEPPSVDVFPISTTQESDPETTRIRPLQILLADDNLINQKVAVRML 685

Query: 730 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789
           +R G  VV    G +  ++L     FD   MD+QMP M GFEAT  IR            
Sbjct: 686 ERQGHTVVVANDGTEVLQIL-AMQSFDVILMDVQMPVMGGFEATARIR------------ 732

Query: 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                 A E  +  H+PI+AMTA  ++   E CL +GM+ Y+SKP +A +L
Sbjct: 733 ------AIEEETGAHLPIIAMTAHAMKGDRERCLGAGMNDYLSKPIKASEL 777



 Score = 42.0 bits (97), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 32/170 (18%)

Query: 679 ASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVC 738
           ASL RA  V +K       LP  S    L G   L+VDDN  N ++    LK++G     
Sbjct: 492 ASLGRAPAVPSKN------LPCKSGN--LNGLSALVVDDNATNRRILQEMLKKWGMQPTL 543

Query: 739 VERGKKATELLMPPHQFDACF----MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSI 794
           V+ G +A   +      ++ F    +D +MP M+GF             + +I++     
Sbjct: 544 VDSGSQALSAISHAADTNSMFQLILVDSEMPGMNGFA-----------LSEQIKQARACS 592

Query: 795 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
           +A          ++ +T+D  +     C   G+  ++ KP  A  L R +
Sbjct: 593 KAI---------VMMLTSDNQRGDAARCRDLGIKSHLVKPIMAADLLRSI 633


>gi|320354894|ref|YP_004196233.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
 gi|320123396|gb|ADW18942.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
          Length = 717

 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 182/602 (30%), Positives = 293/602 (48%), Gaps = 95/602 (15%)

Query: 257 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVL 316
           ++AKS+FLA +SHEIRTPMNG++G  DML+DT LD  QQ++ +T + S  AL+SLIN++L
Sbjct: 195 NIAKSEFLAAMSHEIRTPMNGIIGFTDMLLDTGLDEEQQEFAQTIKRSASALLSLINDIL 254

Query: 317 DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 376
           D +KVE+GKL+LE + F+      DV  L   K   + +E+   I D +P  ++GDPGR+
Sbjct: 255 DFSKVEAGKLDLECIPFDPEITAQDVCDLVRPKVASRPIEVLCRIDDTLPANVMGDPGRY 314

Query: 377 RQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 436
           RQ++ NLMGNS KFT+KG + + + + +E  ++I +   +   ++T  G P  ++  S  
Sbjct: 315 RQVLVNLMGNSAKFTKKGELELAIAVDDETEETITLHARI---RDTGIGIP-EEKLESI- 369

Query: 437 GFKTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 495
            F+ F Q DGST                                           +R +G
Sbjct: 370 -FEAFRQADGST-------------------------------------------TREYG 385

Query: 496 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSV 555
           GTG+GLSI + +   M G +   S  ++GSTF FTA              QQ   + N V
Sbjct: 386 GTGLGLSICRKIAALMHGHVWAESELDVGSTFHFTATLNKA--------PQQRIKRFNRV 437

Query: 556 SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ---LQCLSQIASGSKIINMIL 612
           S      + LVVD       + R+ +    + V  + D       L Q      + ++I+
Sbjct: 438 S--LANKRVLVVDDNLTNLSILRHILMAAELHVVAIHDSSNVRSVLQQAIENHALFDLII 495

Query: 613 VEQEVWEKD-TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKP 671
           ++ ++   D  +++ +  + L +      + + LLA + S+ R           + + KP
Sbjct: 496 LDIQMPAPDGYALAHIIRHELAE-----TATIPLLAYTSSTERNAQRCKEAGFDAFLTKP 550

Query: 672 LRSSMLAASLQRAMG---VGNKGNIRNWELPSMSLR-HLLLGRKILIVDDNNVNLKVAAA 727
            R  +L  ++++ +    V      +   +   S+R  +    +IL+ +DN VN K+A  
Sbjct: 551 TRREILFKTIEKLLDPEEVIETAPTKETFITQYSVREEIKQSIRILLAEDNPVNQKLAVL 610

Query: 728 GLKRYGAAVVCVERGKKATELLM-PPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
            L + G  V     G+KA +L    P  FD   MDIQMPEMDG  ATK +R     FN  
Sbjct: 611 ILNKAGYQVEVASNGRKAVDLFTRRPENFDLILMDIQMPEMDGLAATKELR--SRGFNT- 667

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
                             VPI+AMTA+ ++   E CL++GM+ Y++KP + E ++  + +
Sbjct: 668 ------------------VPIVAMTANAMKGDREICLKAGMNDYITKPVKREIIFEIIEK 709

Query: 847 FF 848
           + 
Sbjct: 710 WL 711



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 24/148 (16%)

Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ----FDACFMDI 762
           L  +++L+VDDN  NL +    L      VV +        +L    +    FD   +DI
Sbjct: 439 LANKRVLVVDDNLTNLSILRHILMAAELHVVAIHDSSNVRSVLQQAIENHALFDLIILDI 498

Query: 763 QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 822
           QMP  DG+    IIR                   +E      +P+LA T+   +   + C
Sbjct: 499 QMPAPDGYALAHIIR-------------------HELAETATIPLLAYTSST-ERNAQRC 538

Query: 823 LRSGMDGYVSKPFEAEQLYREVSRFFPP 850
             +G D +++KP   E L++ + +   P
Sbjct: 539 KEAGFDAFLTKPTRREILFKTIEKLLDP 566


>gi|390949604|ref|YP_006413363.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
 gi|390426173|gb|AFL73238.1| PAS domain S-box [Thiocystis violascens DSM 198]
          Length = 1347

 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 196/603 (32%), Positives = 289/603 (47%), Gaps = 100/603 (16%)

Query: 252  KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
            +AEA+   KS+FLA +SHEIRTPMNGV+GM  +L++T L+  Q  +   A+ SG++L++L
Sbjct: 658  EAEASTQDKSRFLANMSHEIRTPMNGVIGMTRLLLETGLNEEQHRFAEIARTSGESLLAL 717

Query: 312  INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
            IN++LD +K+E+GKLEL+ +SF+ R  L+DV+ L +  +Q K +EL   I   VP ++ G
Sbjct: 718  INDILDFSKIEAGKLELDLLSFDPRGTLEDVVELLAFNAQSKELELTYQIDPDVPVSVRG 777

Query: 372  DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
            DP   RQI+ NL GN+IKFT+ G + + V                               
Sbjct: 778  DPRYLRQILVNLAGNAIKFTDHGEVAIHVKAA---------------------------- 809

Query: 432  CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
                                + +AD + +   + D+G GIP + +  +FT F Q+  S +
Sbjct: 810  --------------------TKTADKVLIRFEIHDSGIGIPEDLRGHLFTAFSQLDNSST 849

Query: 492  RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 551
            R  GGTG+GL ISK LV  M G IG  S    GS F FTA F        E  + Q    
Sbjct: 850  RRFGGTGLGLVISKQLVELMNGAIGVESRAERGSIFWFTAEF--------ELPAVQ-PVA 900

Query: 552  PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV---SDQLQCLSQIASGSKII 608
            P    ++ +G K LVVD       ++   ++  G ++E     ++ L+ L Q A  +   
Sbjct: 901  PLPTYADLKGGKVLVVDDHATNRLLAGTLLRSWGCRIEEANNGAEALEWLHQAARAADPF 960

Query: 609  NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 668
               L++ ++     ++  L + NL K     +    +L  S+ +               +
Sbjct: 961  QAALLDLKM----PAMDGLELGNLIKQDPEIRDTRLVLLTSLVARGDAARMQQAGFDGYL 1016

Query: 669  MKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL-------LG------RKILIV 715
             KPLR  +L   L  A+ +G +        P++  RH L       LG       +ILIV
Sbjct: 1017 TKPLRQQLLHDCL--ALVMGREVATLRAAPPAIVTRHTLADINRQALGASASSQARILIV 1074

Query: 716  DDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLM-PPHQFDACFMDIQMPEMDGFEAT 773
            DDN  N  VA   LK+ G +       G +A E L   P++     MD QMP+MDGFE  
Sbjct: 1075 DDNLTNQIVATGILKQLGYSRTATASNGLEALEALARDPYEL--VLMDGQMPDMDGFETA 1132

Query: 774  KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
            +           RIR GE         +N  VPI+AMTA V+Q   E CL +GMD Y+SK
Sbjct: 1133 R-----------RIRLGEA------GTANRDVPIVAMTALVMQGDRERCLEAGMDDYLSK 1175

Query: 834  PFE 836
            P +
Sbjct: 1176 PVQ 1178


>gi|312171320|emb|CBX79579.1| K07678 two-component system, NarL family, sensor histidine kinase
           BarA [Erwinia amylovora ATCC BAA-2158]
          Length = 924

 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 189/605 (31%), Positives = 292/605 (48%), Gaps = 108/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T L+ TQ+DY+ T + S   L+
Sbjct: 298 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTTLNSTQRDYLHTIERSANNLL 357

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LE + F LRA LD+V+ L +  + +KG+EL + I   VP+  
Sbjct: 358 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 417

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QII NL+GN+IKFTE G+I             I VE                
Sbjct: 418 IGDPLRMQQIIVNLLGNAIKFTESGNI------------DIRVEK--------------- 450

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                ++ S + + L V + DTG GI  + QS++F  F Q   S
Sbjct: 451 ---------------------RALSNNRMELEVQIHDTGIGISEKQQSQLFQAFRQADAS 489

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M GEI F S  + GSTF F             H +  +N
Sbjct: 490 ISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWF-------------HINLALN 536

Query: 550 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN+ S        +G     V+P    AK     +    ++V   S  L  L+Q    
Sbjct: 537 --PNAASDPRIMDCVEGQHLAYVEPNAAAAKAVMEMLNATPMRVS-YSSSLDELAQDRYD 593

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             ++ + + +    E D    T  +     +      ++ + A  + +        GV+ 
Sbjct: 594 VLLMGLPVAQGHRLEIDEQQLTPILQRANSVIMALPFQMQIYAEDLKAR-------GVT- 645

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL       S+ R + V    + R    P       LL  +++ VDDN  NLK+
Sbjct: 646 -ACLIKPL-------SMTRLLPVLVDHHYRRDMQPQAE--RTLLPLRVMAVDDNPANLKL 695

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+   A +V  + G+ A       H  D   MDIQMPE+DG  A+++IR++  + N
Sbjct: 696 IGALLEEQVADIVLCDSGEAAIGQARLQH-LDIILMDIQMPEIDGIRASELIRQLPQHIN 754

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                PI+A+TA  +    ++ +++GM+ Y++KP + ++L R +
Sbjct: 755 --------------------TPIVAVTAHAMDGERQQLMKAGMNDYLAKPIDEQKLSRLL 794

Query: 845 SRFFP 849
           +R+ P
Sbjct: 795 ARYSP 799


>gi|381167829|ref|ZP_09877034.1| Putative two-component sensor histidine kinase, unorthodox system
           [Phaeospirillum molischianum DSM 120]
 gi|380682905|emb|CCG41846.1| Putative two-component sensor histidine kinase, unorthodox system
           [Phaeospirillum molischianum DSM 120]
          Length = 1087

 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 177/612 (28%), Positives = 298/612 (48%), Gaps = 92/612 (15%)

Query: 242 DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 301
           D   + + +++AEA ++AKS+FLAT+SHEIRTPMNGV+GM  +L+DT+L   Q+ + +T 
Sbjct: 440 DITELQQARQQAEAGNLAKSEFLATMSHEIRTPMNGVIGMTGLLLDTKLTEEQRIFAQTI 499

Query: 302 QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 361
           + S ++L+S+IN++LD +K+E+ +L+ E  SF +R +++ V+ + S + + + ++L   I
Sbjct: 500 RESSESLLSIINDILDLSKMEASRLDFEETSFEIRPLVEGVIDILSPRVRGRDIDLTCLI 559

Query: 362 SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 421
                    GDPGR RQ++ NL+GN++KFTE G I + V                     
Sbjct: 560 PAGARGVFRGDPGRLRQVLLNLVGNAVKFTESGTISIVV--------------------- 598

Query: 422 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 481
                 VAD            +DG T            L  +V DTG GIP  A+ R+F 
Sbjct: 599 -----AVAD-----------GRDGRTI-----------LTATVTDTGIGIPDAAKPRMFD 631

Query: 482 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 541
            F Q   S++R  GG+G+GL+I K +V  M GEIGF S    GSTF F         T +
Sbjct: 632 TFTQADASMARRFGGSGLGLAICKRIVDWMGGEIGFESREGKGSTFWFKVPILRSDETPS 691

Query: 542 EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSDQLQCL 598
           E              +E  G+K LVVD       + R  ++  G +V   +  +  ++ +
Sbjct: 692 EAAG----------GAELDGVKVLVVDDTQTNRDILRQQLEGWGARVTAFDSAAIAIEAI 741

Query: 599 SQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 658
               +  +  + ++++  + E    +S L +  L +      +   ++A S   +     
Sbjct: 742 RNANTAGQPFDAVVLDHLMPE----ISGLDLTVLLRSDPLTATLPLVMATSADLATLQPR 797

Query: 659 TDGVSIPSVIMKPLRSSMLAASLQRAMG---VGNKGNIRNWELPSMSLRHLLLGRKILIV 715
            + + I  V++KP+R S L  ++ R +G   +     I    +P+          +IL+ 
Sbjct: 798 LERLRIDEVLVKPVRQSALLNAMLRCLGRPPIDTPQTI----VPAADFPIATTPLRILVA 853

Query: 716 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI 775
           +DN +N +VA   L + G      + G +A E +    ++D   MD+QMP +DG  AT++
Sbjct: 854 EDNAINQQVAVGLLAKLGHRADVADDGAEAVERV-AAGEYDLVMMDMQMPHIDGLGATRL 912

Query: 776 IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
           IR +                         V I+AMTA+ +    + CL +GMD Y+SKP 
Sbjct: 913 IRALP-------------------APKAKVTIIAMTANAMSDDRDTCLAAGMDDYISKPI 953

Query: 836 EAEQLYREVSRF 847
           + ++L   ++R+
Sbjct: 954 DLKRLTDMIARW 965


>gi|162449617|ref|YP_001611984.1| hybrid histidine kinase [Sorangium cellulosum So ce56]
 gi|161160199|emb|CAN91504.1| Hybrid histidine kinase [Sorangium cellulosum So ce56]
          Length = 949

 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 202/628 (32%), Positives = 300/628 (47%), Gaps = 120/628 (19%)

Query: 239 VEEDYHGMMELKKKAEAADVA---KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 295
           VE +     EL+ K E A  A   KS+FLA +SHEIRTPMNG+LG++ ++ +  LD   +
Sbjct: 291 VEANEQAFEELRVKTEQALEASRMKSEFLANMSHEIRTPMNGILGVIRLMQNQSLDGKMR 350

Query: 296 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 355
            YV T  AS   L+S+IN+VLD +K+E+GK   + VSF+LR ++ +V  L + ++ +KG+
Sbjct: 351 RYVETVDASANTLMSIINDVLDFSKLEAGKYVAQHVSFDLRLVIQEVAELMASQAHEKGL 410

Query: 356 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415
           EL   +  RVP  ++GDP RFRQ++TNL+GN+IKFT++G + +                 
Sbjct: 411 ELVYRVERRVPTGVVGDPDRFRQVLTNLVGNAIKFTDRGEVLI----------------- 453

Query: 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 475
                                       D STS    ++A LI L  +V DTG GI  + 
Sbjct: 454 ----------------------------DASTSQQDKATA-LIKL--AVVDTGPGIAPDD 482

Query: 476 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535
           Q ++F  F QV  S+ R HGGTG+GL+ISK LV  M GE+G  S P  GS F FT   G 
Sbjct: 483 QKKLFAAFSQVDGSLVRKHGGTGLGLAISKRLVEVMGGEVGLDSTPGQGSRFWFTIRVGV 542

Query: 536 GSSTSNEHNSQQMNNQPNSVSSEF-QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 594
            +        +Q+       S+E+  G +ALVV+       V   H+   G   E     
Sbjct: 543 TA------GGEQIR------SAEWASGRRALVVENSRSWRDVVVEHLVAWGFDAE----- 585

Query: 595 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC-----------GFQS-- 641
                  ASG   IN +  E  V EK    + +    +  LG              Q+  
Sbjct: 586 -----SAASGRDAINRL--ELAVLEKRPFSAAVVGVQMDDLGLEEFLRTIQSVPALQTLP 638

Query: 642 --KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM-GVGNKGNIRNWEL 698
              L+ + +S++ S  ++     S+ + + KPLR S L  +LQ A+ G       +    
Sbjct: 639 VVALYHMGSSVTLSGMDS-----SMVTQLPKPLRVSELYNTLQSALTGASTPPPSKPGAE 693

Query: 699 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
           P      L     +L+VDDN +N  VA   +++ G  V     G++A E +    ++ A 
Sbjct: 694 PGKIASKL----PVLVVDDNEINRYVAMEQVEQLGLRVETACNGQEALECV-KRKRYVAV 748

Query: 759 FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
            MD QMP MDG+ AT+ IR                  A+E   N H  I+A+TA  +   
Sbjct: 749 LMDCQMPVMDGYTATQEIR------------------AWERSRNRHTVIIALTAHALVGE 790

Query: 819 YEECLRSGMDGYVSKPFEAEQLYREVSR 846
            +  L +GMD Y++KP   + L + + R
Sbjct: 791 RDRVLAAGMDDYLAKPVRPQSLQKTLWR 818


>gi|351728725|ref|ZP_08946416.1| hypothetical protein AradN_03058 [Acidovorax radicis N35]
          Length = 1020

 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 187/625 (29%), Positives = 292/625 (46%), Gaps = 120/625 (19%)

Query: 237 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 296
           A + E    ++  + KAE A   KS FLA +SHEIRTPMN V+GM  + + TEL V Q+D
Sbjct: 246 AALREHEDELVVAQAKAEDASRMKSDFLANMSHEIRTPMNAVIGMSHLALATELTVRQRD 305

Query: 297 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 356
           Y++  Q SG+ L+ LIN++LD +K+E+GKLE+E V F+L  +LD+V +L   K   KG+E
Sbjct: 306 YIQKIQRSGQHLLGLINDILDFSKIEAGKLEVEVVDFDLHGVLDNVANLLGEKCASKGLE 365

Query: 357 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 416
           L   +   +P  L GDP R  QI+ N   N++KFT++G I V             V    
Sbjct: 366 LMFDVDSHLPADLRGDPLRLGQILVNYANNAVKFTDEGEIIV------------RVREAA 413

Query: 417 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476
             ++  L  + V D                                    TG G+  E Q
Sbjct: 414 RDAQGVLLRFEVQD------------------------------------TGIGLTDEQQ 437

Query: 477 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536
           SR+F  F Q   S +R +GGTG+GL+ISK L   M G++G  S P  GSTF FTA  G G
Sbjct: 438 SRLFRSFEQADTSTTRKYGGTGLGLAISKKLASLMGGDVGVQSAPGRGSTFWFTARLGLG 497

Query: 537 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
           +ST           +P     + +G + LVVD             Q   I  E++S    
Sbjct: 498 AST----------QRPLLPEPDLRGRRVLVVDDSE----------QARQILAELLSSMSF 537

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK------------LF 644
            ++  +SG++ +++     +           F++       GF++             + 
Sbjct: 538 SVTLASSGAQAVDLARAADQAGR---PCEIAFLDWKMPGMDGFETARQLAQLPHPPRPVI 594

Query: 645 LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN--------IRNW 696
           + A+         +  G+ +  ++ KP+  S L  +  RA+G   + +         R  
Sbjct: 595 VTAHGRDDVLNELTRSGIGL--MLTKPVNPSQLFDAAMRALGGAQRVDDGRRLPVPPRGA 652

Query: 697 ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 756
           EL S+       G ++L+VDDN++N +V    L   G  V   + G+ A ++L     +D
Sbjct: 653 ELASIR------GARVLLVDDNDLNQQVGRELLTSAGLVVDVADNGQAALDML-ARGTYD 705

Query: 757 ACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 816
              MD+QMP MDG  AT+ +R                    +N +   +P+LAMTA+ + 
Sbjct: 706 IVLMDMQMPVMDGLTATRHLR--------------------QNPTWARLPVLAMTANAMS 745

Query: 817 ATYEECLRSGMDGYVSKPFEAEQLY 841
           +  E+CL +GM+G+++KP + E L+
Sbjct: 746 SDREQCLDAGMNGHIAKPIDPEALF 770


>gi|300867388|ref|ZP_07112044.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334639|emb|CBN57212.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1120

 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 193/628 (30%), Positives = 294/628 (46%), Gaps = 105/628 (16%)

Query: 233 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 292
           V  I  V +  + ++E ++ A  A   KSQFLA +SHEIRTPMNGVLGM  +L+   L+ 
Sbjct: 387 VGGIVLVSDRINELVEAREAAIEASRVKSQFLANMSHEIRTPMNGVLGMAQLLLRLSLEA 446

Query: 293 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 352
             ++Y +T   S + L+S+IN++LD +K+E+G++ LE + F+L   ++ ++ +    +++
Sbjct: 447 KPREYAQTIYRSAEHLLSVINDILDFSKIEAGEMRLETLDFDLDVCIESMVEMVVATAEE 506

Query: 353 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 412
           KG+EL V I   VP  L GDPGR +QI+ NL+ N+IKFT++G + V V L    VD    
Sbjct: 507 KGLELNVLIESSVPRQLQGDPGRLKQILLNLVNNAIKFTDRGQVLVRVSLKSSTVDR--- 563

Query: 413 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 472
                                                          LI SV D+G GI 
Sbjct: 564 ----------------------------------------------KLIFSVRDSGIGIS 577

Query: 473 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532
            E Q ++F  F QV  S +R +GGTG+GL I K LV  M GEIG  +    GS F FT  
Sbjct: 578 PEGQKKLFQSFSQVDGSPTRQYGGTGLGLVICKQLVEMMGGEIGVRTSVGKGSNFWFTIP 637

Query: 533 FGNGSSTSNEHNSQQMNNQP--NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 590
                         QM  QP   S  S+  G + LVV    +   V+R   +  G     
Sbjct: 638 L-------------QMQPQPVERSRGSQIAGKRLLVVSHSAVTRAVARAIAEARGAYCTE 684

Query: 591 VSDQ---LQCLSQIASGSKI----INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 643
             D    L  L +  SG++        + ++ ++ + DT     FV +L          L
Sbjct: 685 AEDARTVLAVLEEANSGARREQEHYTAVFLDLQLPQLDTQGFAAFVRSL------LVKPL 738

Query: 644 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL---------QRAMGVGNKGNIR 694
            +   S+       +   +   S ++KPLR+S    SL         ++   V ++ N  
Sbjct: 739 LIGVTSLRDRHKAEALCSLGAASYLIKPLRASQFCDSLLPATTKEEEEKFSYVTSQDNST 798

Query: 695 --NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 752
             N++LP   L +  L  KIL+ +D+ +N +V    L   G    C   G++A ++L   
Sbjct: 799 KPNYQLP---LSNSQLSVKILLAEDHYINQQVILNQLMVLGYQADCAANGQEALKML-EL 854

Query: 753 HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA 812
             +D   MD QMP +DG+  TK +RE E N            +  EN ++  V ++A+TA
Sbjct: 855 QTYDVVLMDCQMPILDGYATTKKLREQEAN------------KERENSAHKTV-VIALTA 901

Query: 813 DVIQATYEECLRSGMDGYVSKPFEAEQL 840
             +    E+CL +GMD Y+SKP + E L
Sbjct: 902 HAMPGEREKCLAAGMDDYLSKPVDIEDL 929



 Score = 45.1 bits (105), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 38/139 (27%)

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERG--KKATELLMPPHQ-------------- 754
           K+LIVDD+ V+       LK  G  V   E G   +A  LL+  H               
Sbjct: 6   KVLIVDDDEVDRMAVRRALKIAGVRVEIAEAGGSAEARVLLLAAHNELTNSAEEMASAKP 65

Query: 755 FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
           FD  F+D ++P+ DG +  K IRE                      +   +P++ +T   
Sbjct: 66  FDCAFLDYRLPDGDGLKLVKTIRE----------------------AGIKIPLIVLTGQG 103

Query: 815 IQATYEECLRSGMDGYVSK 833
            +    E +++G   Y++K
Sbjct: 104 DEQIAVELMKAGASDYIAK 122


>gi|227114812|ref|ZP_03828468.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 931

 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 198/610 (32%), Positives = 290/610 (47%), Gaps = 114/610 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T L+ TQ DY+ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLNTTQTDYLLTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F+L + LDDV+ L +  + +KG+EL + I + VPE  
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +QIITNL+GN+IKFTE+G+I             I VE     S          
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNI------------DIRVEKRRQESHQ-------- 442

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                       + L V + DTG GI    QS++F  F Q   S
Sbjct: 443 ----------------------------VQLEVQIRDTGIGIAELQQSQLFQAFRQADTS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S  N GSTF F              N   M 
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITL--------PLNPHAMP 526

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASGSKI 607
            +P    +  QG     V+  PI A+ +      L I  Q  ++        Q+  G   
Sbjct: 527 TEP--AYTMLQGKHLAYVEYHPIAAQAT------LDILSQTPLIVSYSPTFEQLPEGE-- 576

Query: 608 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA-NTSTDGVSIPS 666
            +++L+   V  ++T +   +   LR + C     + L   S++   A    T GV   +
Sbjct: 577 FDILLLGIPVQYRNTLLD--YTPRLRDI-CRRSPCVILALPSLAQMDAEQLKTFGVH--A 631

Query: 667 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK-------ILIVDDNN 719
            + KPL +S L   LQ      +    +   LP  +  H  + R        ++ VDDN 
Sbjct: 632 CLSKPLAASRLLPLLQ------DSTLFQLSFLPDDAASHQSVVRHPARLPLSVMAVDDNP 685

Query: 720 VNLKVAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPEMDGFEATKII 776
            NLK+    L+     ++  E G+ A    EL    +QFD   MDIQMP MDG  A+++I
Sbjct: 686 ANLKLIGTLLEEQVETIILCESGQDAIAQAEL----NQFDVILMDIQMPGMDGICASELI 741

Query: 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
           R++ H+                       PI+A+TA  +    E  LRSGMD Y++KP +
Sbjct: 742 RQIPHHATT--------------------PIIAVTAQTMTGEREHLLRSGMDDYLAKPID 781

Query: 837 AEQLYREVSR 846
            + L   ++R
Sbjct: 782 EQMLKSVLTR 791


>gi|223939410|ref|ZP_03631288.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223891902|gb|EEF58385.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 1436

 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 171/607 (28%), Positives = 290/607 (47%), Gaps = 91/607 (14%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K KAE A   KS FLA +SHEIRTPMN ++G+  + + T+L   Q+DY+     +G +L+
Sbjct: 694  KAKAEEATQMKSMFLANMSHEIRTPMNAIIGLSHLALKTQLTPKQRDYIGKVHNAGTSLL 753

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            ++IN++LD +K+E+GKL+LE V F L  ++  V +L + K+ +KG+E   +++  +PE L
Sbjct: 754  AVINDILDFSKIEAGKLDLEVVDFKLDEVITSVTTLTAQKAHEKGLEFLAHVTPGIPEFL 813

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GDP R  QI+TN + N++KFTE+G I + + L+E                         
Sbjct: 814  LGDPLRLGQILTNFVNNAVKFTERGEIRLNIELIER------------------------ 849

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                    + + + L  SV DTG G+  E  +++F PF Q   S
Sbjct: 850  ------------------------TGEKLQLKFSVRDTGIGMTTEQAAKLFQPFTQADMS 885

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R HGGTG+GL+I + LV  M G I   S P  GSTF FT       S  N   + ++ 
Sbjct: 886  TTRKHGGTGLGLTICRRLVELMGGRIWLESEPGAGSTFYFTVWL----SIGNRQGTGKI- 940

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--ASGSKI 607
                 +  +   ++ LVVD  P   ++    +  +  +V+VV+     ++ +     S+ 
Sbjct: 941  -----IPEKLAELRVLVVDDNPAACEILEEPLANIVKRVDVVASGKDAITAVKQKDASEP 995

Query: 608  INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
             +++ ++  +   D   ++ F+ +   L         +L  +          + + +   
Sbjct: 996  YDILFMDWRMPGMDGLQTSRFIKSDETLR---HQPHIVLVTAFGREEVREEAERLQLDGF 1052

Query: 668  IMKPLRSSMLAASLQRAMGVGNKG-NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
            ++KP+  SM    L       ++  ++   E  +  LR    G +IL+ +DN++N ++A 
Sbjct: 1053 LVKPVTRSMTVDMLVNVFSEASQEISVSVEEEQAAKLR----GARILLAEDNDINQQIAV 1108

Query: 727  AGLKRYGAAVVCVERGKKATELLM---PPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
              L+  GA V     G +A  ++     P  FD   MD+QMPEMDG++AT  +R  +  F
Sbjct: 1109 ELLEGAGATVNVANNGLEAVGIVFNGPQPPPFDVVLMDLQMPEMDGYQATAKLR-ADPRF 1167

Query: 784  NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
                                 +PI+AMTA       + C+ +GM+ ++SKP +   L+  
Sbjct: 1168 AT-------------------LPIIAMTAHATIEERQRCIAAGMNDHISKPIDPANLFET 1208

Query: 844  VSRFFPP 850
            V RF+ P
Sbjct: 1209 VGRFYKP 1215


>gi|385787352|ref|YP_005818461.1| hybrid sensory histidine kinase BarA [Erwinia sp. Ejp617]
 gi|310766624|gb|ADP11574.1| hybrid sensory histidine kinase BarA [Erwinia sp. Ejp617]
          Length = 909

 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 190/605 (31%), Positives = 293/605 (48%), Gaps = 108/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K++A+ A   KS+FLA +SHE+RTP+NGV+G     + T L+ TQ+DY+ T + S   L+
Sbjct: 283 KRRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTMLNSTQRDYLHTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LE + F LRA LD+V+ L +  + +KG+EL + I   VP+  
Sbjct: 343 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QII NL+GN+IKFTE G+I             I VE                
Sbjct: 403 IGDPLRMQQIIVNLLGNAIKFTESGNI------------DIRVEK--------------- 435

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                ++ S + + L V + DTG GI  + QS++F  F Q   S
Sbjct: 436 ---------------------RALSNNRMELEVQIHDTGIGISEKQQSQLFQAFRQADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M GEI F S  + GSTF F             H + ++N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWF-------------HINLELN 521

Query: 550 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN+ S        +G     V+P    AK     +    +QV   S  L  L+Q    
Sbjct: 522 --PNAASDPRIMDCVEGQHLAYVEPNAAAAKAVMEMLNATPMQVS-YSPSLDELAQDRYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             ++ + +V+    E D    T  +     +      ++ + A  + +        GV+ 
Sbjct: 579 VLLMGLPVVQGHSLEIDEEQLTPILQRANSVIMALPFQMQIYAEDLKAR-------GVT- 630

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL       S+ R + V    + R    P       LL  +++ VDDN  NLK+
Sbjct: 631 -ACLIKPL-------SMTRLLPVLVDHHHRRDMQPQAE--RTLLPLRVMAVDDNPANLKL 680

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+   A +V  + G+ A       H  D   MDIQMP++DG  A++ IRE+  + N
Sbjct: 681 IGALLEEQVADIVLCDSGEAAIAQARLQH-LDIILMDIQMPDIDGIRASERIRELPQHTN 739

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                PI+A+TA  +    ++ +++GM+ Y++KP + ++L R +
Sbjct: 740 --------------------TPIVAVTAHAMDGERQQLMKAGMNDYLAKPIDEQKLSRLL 779

Query: 845 SRFFP 849
           +R+ P
Sbjct: 780 ARYSP 784


>gi|117618531|ref|YP_854948.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559938|gb|ABK36886.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 888

 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 185/599 (30%), Positives = 281/599 (46%), Gaps = 90/599 (15%)

Query: 253 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
           AE A  AKS FLA +SHEIRTPMN +LGM  + + T LD  Q DYV   Q S + L+ +I
Sbjct: 151 AEGATRAKSDFLANMSHEIRTPMNAILGMSHLALQTRLDPQQFDYVSKIQRSAQHLLGII 210

Query: 313 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
           N++LD +K+E+GKL+LE + F+L  +L+++ +L   K++ KG+EL   +  ++   L GD
Sbjct: 211 NDILDFSKIEAGKLDLERIEFDLDHVLENLATLVGEKAEAKGIELLFEVDHQLDTLLYGD 270

Query: 373 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 432
           P R  QI+ N   N++KFTE+G I V V  +E+    + +                   C
Sbjct: 271 PLRLGQILINYANNAVKFTEQGEILVKVSCLEKQPQEVLLH------------------C 312

Query: 433 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492
                                         SV+DTG G+  E Q R+F  F Q   S +R
Sbjct: 313 ------------------------------SVQDTGIGMSQEQQQRLFQSFQQADSSTTR 342

Query: 493 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 552
            +GGTG+GL+IS+ L   M GE+G  S P  GSTF FTA  G G   S            
Sbjct: 343 KYGGTGLGLAISRKLAELMGGEVGVQSEPGRGSTFWFTARLGRGRRRSR----------- 391

Query: 553 NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---SKIIN 609
              S + +G + LV D       +    ++ +   V+      Q L  IA      +   
Sbjct: 392 YLPSLDLRGRRMLVADDSASARTIMAALLRSMSFVVDTAESGQQALQMIAGAEQEGQPYE 451

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
           ++L++   W             L   G G Q    ++             D      V++
Sbjct: 452 VVLLD---WHMPGLDGIETGRRLIARGMG-QRPYRVMVTGYGREEVFRQADTAGFDRVLV 507

Query: 670 KPLRSSMLAASLQRAMGV-GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
           KP+ +S+L       +G+ G + +   ++ P  +  +   G +IL+ +DN +N +VA   
Sbjct: 508 KPVCASVL---FDTVIGLFGQQASPLTFKPPQATHHYRFDGLRILLAEDNELNQQVALEL 564

Query: 729 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
           L+  GA V     G  A E++   H +D   MD+QMP MDG  AT+++RE          
Sbjct: 565 LRAVGADVSIAGNGAIALEMVAQTH-YDLILMDMQMPVMDGLAATRLLRE---------- 613

Query: 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                    E+V   H PILAMTA+V+    E CL +GMD +++KP + ++LY  + R+
Sbjct: 614 --------REDVGQ-HTPILAMTANVMAGDRERCLAAGMDDHIAKPIDPDRLYAALQRW 663


>gi|119356453|ref|YP_911097.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
            266]
 gi|119353802|gb|ABL64673.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
            266]
          Length = 1398

 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 193/630 (30%), Positives = 304/630 (48%), Gaps = 108/630 (17%)

Query: 245  GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
             +++ +  AE+A+ AKS+FLA +SHEIRTPMNGV+GM ++L+DT+L   Q+D+     AS
Sbjct: 853  ALVDARYAAESANRAKSEFLANMSHEIRTPMNGVIGMANLLLDTDLSDEQRDFADMLLAS 912

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
            G++L+++IN++LD +K+E+GKLELE + F+LR +L+   ++   K+ +K +E    +S  
Sbjct: 913  GESLLTVINDILDFSKIEAGKLELEHIVFDLRKLLESFGAVMGLKAVEKNLEFNCVVSPE 972

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            VP    GDPGR RQI+ NL GN+IKFT+ G++ V V +  E      +     S K+T  
Sbjct: 973  VPVFFKGDPGRIRQILNNLAGNAIKFTQNGNVTVAVSMQSENNGDAVLRF---SVKDTGI 1029

Query: 425  GYPVA--DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 482
            G P A  DR      FK+F                                         
Sbjct: 1030 GIPEAKLDRL-----FKSFT---------------------------------------- 1044

Query: 483  FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNE 542
              QV  S +R +GGTG+GL+IS+ LV  M G+IG +S    GS F FT         S  
Sbjct: 1045 --QVDASTTRKYGGTGLGLAISRQLVELMGGKIGVISHEGNGSEFWFTIFLKKQPFYST- 1101

Query: 543  HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA 602
                 +  QP   +S F G++ALVVD      K+ +  +  L I+V   S     L ++ 
Sbjct: 1102 -----IETQP---TSAFAGIRALVVDDNAANRKMLKALLSSLDIRVTEASGGDAALGELR 1153

Query: 603  SGSK--------IINMILVEQEVWEKDTSVS-TLFVNNLRKLGCGFQSKLFLLANSISSS 653
            S  K        II+M + + + +    ++   L + N         ++LFL++  + + 
Sbjct: 1154 SAFKSGDPFALAIIDMQMPDMDGFMLGQTIKEDLLLRN---------TELFLMS-PVGTL 1203

Query: 654  RANTSTDGVSIPSVIMKPLRSSMLAASLQRAM-GVGNKGNIRNWEL---------PSMSL 703
                        + + KP+    L A++ + +    N+   RN  +         P M  
Sbjct: 1204 NQREEYHRAGFSANLSKPVGQLELVAAINKVVFNHDNQSGSRNPSISYPVTEEGEPPMVP 1263

Query: 704  RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 763
               L   +IL+ +D+ VN  V    L ++G  V  V  G++  ++L     +D   MD+Q
Sbjct: 1264 VGKLEHYRILLAEDSRVNQMVVIGVLTKFGYGVDVVSNGQECVDVLQ-KRTYDLVLMDVQ 1322

Query: 764  MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 823
            MP MDG  AT IIR                 +    V + ++P++A+TA  +Q   E CL
Sbjct: 1323 MPVMDGLNATGIIR-----------------DPASKVLDHNIPVIALTAHAMQGDRESCL 1365

Query: 824  RSGMDGYVSKPFEAEQLYREVSRFFPPIPD 853
             +GM+ Y+SKP +A  L   +S++ P  PD
Sbjct: 1366 YAGMNDYISKPIDASVLTETISKWLPVKPD 1395


>gi|319781148|ref|YP_004140624.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167036|gb|ADV10574.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 1545

 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 193/639 (30%), Positives = 294/639 (46%), Gaps = 121/639 (18%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + E +++A  AD AKS+FLA +SHEIRTPMNGVLGM ++L  ++LD  Q+ +      SG
Sbjct: 979  LREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSDLDPKQKTFTDIIVKSG 1038

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
             AL+++IN++LD +K+++G+L L+   FNL   ++DV +L S ++++K +EL V +  R+
Sbjct: 1039 NALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRVEPRL 1098

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
                IGD GR RQI+TNL+GN++KFT++GH+ V V                         
Sbjct: 1099 ESLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVT------------------------ 1134

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                               G   P  +       L +SV DTG GIP E    +F  F Q
Sbjct: 1135 -------------------GERVPTGT------KLTISVTDTGIGIPEEKLKLVFEKFSQ 1169

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
            V  S +R H GTG+GL+I+  LV  M G+IG  S    GSTF F+         + + N 
Sbjct: 1170 VDTSSTRRHEGTGLGLAITSRLVELMGGDIGVESAEGKGSTFWFSVTL----PRAGQQNG 1225

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL---GIQVEVVSDQLQCLSQIA 602
            Q++   P  V+    G + L+VD   +   +    +          E  ++ L+ L   A
Sbjct: 1226 QRI--MPIDVT----GARVLIVDDNAVNRAILTEQMTSWTFDSCAAESGAEGLKVLIAAA 1279

Query: 603  SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
            +    ++ ++++ ++ E   +     V N      G      ++  S+  S ANTS   +
Sbjct: 1280 AYGVPVDCVVLDYQMPEMSGAEMARIVRNT----AGLAGTPIIMLTSVDQSLANTSYRDL 1335

Query: 663  SIPSVIMKPLRSSM----LAASLQR-------------AMGVGNKGNIRNWELPSMSLRH 705
             I + ++KP RSS+    L A++QR             A  V      R         R 
Sbjct: 1336 GIDAQLIKPARSSVLLETLVATIQRHRHNTGGSDAQPLAADVAASNVTRPQPSAPSEQRA 1395

Query: 706  LLL-------------GRK--ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 750
            LL              G +  IL+ +DN VN  V    L   G     V  G+KA +   
Sbjct: 1396 LLQPPSIRPRPPVAAGGDRLDILVAEDNEVNQMVFTQILGETGYGFEIVGNGRKALDAF- 1454

Query: 751  PPHQFDAC--FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL 808
               + + C   MD+ MPEM+G EAT  IR +E                    +  HVPI+
Sbjct: 1455 --GRLNPCMILMDVSMPEMNGLEATAAIRRLEEE------------------TGTHVPIV 1494

Query: 809  AMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
             +TA  ++   E CL +GMD Y+ KP     L  +V R+
Sbjct: 1495 GVTAHALKGDRERCLEAGMDDYLPKPISPRALLEKVERW 1533


>gi|292487219|ref|YP_003530091.1| sensor histidine kinase/response regulator [Erwinia amylovora
           CFBP1430]
 gi|292900406|ref|YP_003539775.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
 gi|428784150|ref|ZP_19001642.1| sensor histidine kinase/response regulator [Erwinia amylovora
           ACW56400]
 gi|291200254|emb|CBJ47382.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291552638|emb|CBA19683.1| sensor histidine kinase/response regulator [Erwinia amylovora
           CFBP1430]
 gi|426277289|gb|EKV55015.1| sensor histidine kinase/response regulator [Erwinia amylovora
           ACW56400]
          Length = 909

 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 189/605 (31%), Positives = 292/605 (48%), Gaps = 108/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T L+ TQ+DY+ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTTLNSTQRDYLHTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LE + F LRA LD+V+ L +  + +KG+EL + I   VP+  
Sbjct: 343 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QII NL+GN+IKFTE G+I             I VE                
Sbjct: 403 IGDPLRMQQIIVNLLGNAIKFTESGNI------------DIRVEK--------------- 435

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                ++ S + + L V + DTG GI  + QS++F  F Q   S
Sbjct: 436 ---------------------RALSNNRMELEVQIHDTGIGISEKQQSQLFQAFRQADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M GEI F S  + GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWF-------------HINLALN 521

Query: 550 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN+ S        +G     V+P    AK     +    ++V   S  L  L+Q    
Sbjct: 522 --PNAASDPRIMDCVEGQHLAYVEPNEAAAKAVMEMLNATPMRVS-YSSSLDELAQDRYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             ++ + + +    E D    T  +     +      ++ + A  + +        GV+ 
Sbjct: 579 VLLMGLPVAQGHRLEIDEQQLTPILQRANSVIMALPFQMQIYAEDLKAR-------GVT- 630

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL       S+ R + V    + R    P       LL  +++ VDDN  NLK+
Sbjct: 631 -ACLIKPL-------SMTRLLPVLVDHHYRRDMQPQAE--RTLLPLRVMAVDDNPANLKL 680

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+   A +V  + G+ A       H  D   MDIQMPE+DG  A+++IR++  + N
Sbjct: 681 IGALLEEQVADIVLCDSGEAAIGQARLQH-LDIILMDIQMPEIDGIRASELIRQLPQHIN 739

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                PI+A+TA  +    ++ +++GM+ Y++KP + ++L R +
Sbjct: 740 --------------------TPIVAVTAHAMDGERQQLMKAGMNDYLAKPIDEQKLSRLL 779

Query: 845 SRFFP 849
           +R+ P
Sbjct: 780 ARYSP 784


>gi|428212988|ref|YP_007086132.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
 gi|428001369|gb|AFY82212.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
          Length = 932

 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 190/613 (30%), Positives = 293/613 (47%), Gaps = 102/613 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +++AE A +AKS FLA +SHEIRTPMN VLGM  +L++T L   Q+D++ T + SG AL+
Sbjct: 270 RREAEQASIAKSYFLANMSHEIRTPMNAVLGMTGLLLETVLTAEQRDFIETIRTSGDALL 329

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           +LI+E+LD +K+E+G++ LE + FNL   +++++ L + ++  K VE+A +I + +P  L
Sbjct: 330 TLIDEILDLSKLEAGEMHLEQLDFNLATTVEEIIDLLAPQAHLKSVEVASFIEENLPLGL 389

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GD  R RQI+TNL+GN+IKFTE+G++   V  VE V ++ +  T L S  +T       
Sbjct: 390 RGDSSRLRQILTNLIGNAIKFTEEGYV---VLQVERVTENPQETTLLFSVIDT------- 439

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                                 G GI  + QS++F PF QV  S
Sbjct: 440 --------------------------------------GIGIAAQNQSQLFQPFSQVDSS 461

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R +GGTG+GL+I + LV  M+G+IG  S    GS F F   F            Q++ 
Sbjct: 462 TTREYGGTGLGLAICQQLVTLMEGKIGLESREGEGSNFWFRVPF----------EKQEIP 511

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
            +  S   E + +  LVV    +   V R  + R G+QVE +            G    N
Sbjct: 512 IEKLSAPREIEDLSLLVVANSEVVRMVIRDRVTRWGLQVEEI-----------EGETAFN 560

Query: 610 MILVEQEVWEK----DTSVSTLFVNNLRKLGCGFQ-------SKLFLLANSISSSRANTS 658
            +   Q  WE+    D  V  L +  +  +    Q       S + L+A + +  R    
Sbjct: 561 FL---QTQWEEGIEYDLMVIDLEMPEITGIALAEQIKQDSRFSSIPLIAIAATHQRNLIK 617

Query: 659 TD-GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDD 717
           T          +KP++ +     + RA+G+               +       KIL+ +D
Sbjct: 618 TALNSGFCDCPIKPIKPAKFLEVICRAVGLAVTTEPDPASYTKDKINSEQTSIKILLAED 677

Query: 718 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
           N VN KVA   L+  G       +G++A +L    H +    MD QMP +DG++ T  IR
Sbjct: 678 NPVNQKVAIKQLELLGYQADIANQGEEALKLWQ-THAYQIILMDCQMPVLDGYQVTAQIR 736

Query: 778 EMEH---NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
            +E    +F  R  R              H  I+AMTA  ++   E+CL +GMD Y+SKP
Sbjct: 737 RLEQGTGDFPVRNPR--------------HTVIIAMTAHAMKEDREKCLAAGMDDYISKP 782

Query: 835 FEAEQLYREVSRF 847
              +QL   +S++
Sbjct: 783 VCPDQLQAILSKW 795


>gi|253701316|ref|YP_003022505.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251776166|gb|ACT18747.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 818

 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 185/616 (30%), Positives = 297/616 (48%), Gaps = 94/616 (15%)

Query: 231 ATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL 290
           ++VNR  ++EE    +    + A++A+ AKS FLA +SHEIRTPM GVLGM ++L++T+L
Sbjct: 159 SSVNR--QLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLNTDL 216

Query: 291 DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKS 350
              Q  +V + + SG+AL+ +IN +LD +K+E+G++ELE + F+L  +  D +++F+  +
Sbjct: 217 SKEQARFVESVRRSGEALLGIINNILDFSKIEAGRMELETIPFDLHQLAADAVAMFAEDA 276

Query: 351 QDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 410
             KG+ L+  I   +P    GDPGR RQ++ NL+GN++KFT +G + ++V L  E     
Sbjct: 277 AKKGIALSCRIEPGLPGMFQGDPGRLRQVMVNLLGNAVKFTPEGAVTLSVSLARE----- 331

Query: 411 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
                           P   R                              V+VEDTG G
Sbjct: 332 ----------------PALVR------------------------------VTVEDTGIG 345

Query: 471 IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
           I  E+Q RIF  F Q   S++R +GGTG+GL+I+K L   M G +   S P  G++F+FT
Sbjct: 346 ISRESQERIFDHFAQGDESMTRRYGGTGLGLAIAKQLTELMGGVMELSSEPGEGASFSFT 405

Query: 531 AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 590
                               +P    S  +  +AL+    P   +        LG+ ++ 
Sbjct: 406 VAL----------KPHHKAPRPERSYSALRSKRALLASDDPELQETLLELTGGLGMDLDC 455

Query: 591 VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           V D    L ++ +     +++L++  V   D          +R +  G   +L LLA   
Sbjct: 456 VGDAPGALCRLLAAP--FDLVLMDHCVAGTD---GLALAATIRSIAVGHCVRLVLLAEEP 510

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
            ++ A    + + +  +    L    L A+L  A+        +     + +LR L   R
Sbjct: 511 EAAPAERVRE-IEVTLLRRTNLTREGLYAALASAL---GMEEEQGEGEDAPTLRRL---R 563

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
           ++L+V+DN VN +V    L+  G  V   E G  A + +    ++D  FMD QMP +DG 
Sbjct: 564 QVLLVEDNVVNQEVGRGMLESLGCRVKVAENGLAALKEVQ-RRKYDLIFMDCQMPVLDGL 622

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            AT+ IR+ E   ++R                  VPI+A+TA  ++   E CL +G D Y
Sbjct: 623 GATRRIRQREEGSSSR------------------VPIIALTAYAMKGDREACLAAGADDY 664

Query: 831 VSKPFEAEQLYREVSR 846
           +SKPF  EQL + + R
Sbjct: 665 LSKPFSREQLSKSIER 680


>gi|259415156|ref|ZP_05739078.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp.
           TrichCH4B]
 gi|259349066|gb|EEW60820.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp.
           TrichCH4B]
          Length = 770

 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 187/662 (28%), Positives = 315/662 (47%), Gaps = 111/662 (16%)

Query: 206 PW----PLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKS 261
           PW       A++ S+G+L              +  A+ +E    +   +++AE A  AKS
Sbjct: 203 PWYSSREFQALNVSVGVLE-------------DSFAERDEREQALERAREQAEIASRAKS 249

Query: 262 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKV 321
           +FLA +SHEIRTPMNGV+GM ++L +T+L   Q+ Y  T   SG AL+++IN++L+ +K+
Sbjct: 250 EFLANMSHEIRTPMNGVIGMAEVLRETKLTPDQEMYTDTIVKSGNALLTIINDILNFSKI 309

Query: 322 ESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIIT 381
           E+GKLEL   +FNLR +++DV+ L + K+ +K V+L +     + E   GD GR RQIIT
Sbjct: 310 EAGKLELTQATFNLRTVVEDVVMLLAPKAAEKWVQLTLRYDPDLVEFYDGDAGRIRQIIT 369

Query: 382 NLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTF 441
           N++GN++KFT +G + + V                                         
Sbjct: 370 NVVGNAVKFTSQGSVHIDVT---------------------------------------- 389

Query: 442 NQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGL 501
                     +S    ++L +SV DTG GIP E   RIF  F QV  + +R+  GTG+GL
Sbjct: 390 ---------GTSRGKEMDLRISVVDTGIGIPAEKLDRIFHAFEQVDGAATRSFEGTGLGL 440

Query: 502 SISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQG 561
           +IS  L+  MKG I   S    GS FT          TS+      +  QP        G
Sbjct: 441 AISTRLLQLMKGRIHVTSSEGKGSVFTIDITL----PTSDRAPVAFLPEQP------VAG 490

Query: 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC---LSQIASGSKIINMILVEQEVW 618
           + AL+VD   +  ++    ++  G++V   +  ++    L ++   +   +++ ++  + 
Sbjct: 491 LHALIVDDLELNRRILGERLRSWGLRVTEAASAMEAMLHLDEMRDATDTCDLLFLDFNMP 550

Query: 619 EKDTSVSTLFVNNLRKLGCGFQSKL-FLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 677
           + D      +   LR  G    +++  ++ +S+  + + +    +     ++KP+R+  L
Sbjct: 551 DCDG-----YELALRIRGLPNAARVPIIVISSVDPALSQSMLADIGSCHQVLKPVRADQL 605

Query: 678 AASLQRAMGVGNKGNIRNWE---LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGA 734
              + +A+G    GN R+      P +  R      K+L+ +DN  N  V    LK    
Sbjct: 606 RVVISQALGGEASGNSRDRSDAGSPKLGKRI-----KLLMAEDNRTNQVVVTRMLKSENV 660

Query: 735 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSI 794
            +     G++A E+ +   + D   MD+ MP MDG EAT+ IR +E+  +          
Sbjct: 661 DITIAANGQEAVEMYL-RDEPDLILMDMMMPVMDGLEATEEIRRLENEGDQP-------- 711

Query: 795 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIPDR 854
                    HVPI+A+TA+ +Q+  E CL  GMD ++SKP   + L   + +++    D 
Sbjct: 712 ---------HVPIIALTANALQSHEEACLEVGMDDFLSKPIRKQALLETLHKWYDVRADA 762

Query: 855 SP 856
           +P
Sbjct: 763 AP 764


>gi|298530006|ref|ZP_07017408.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298509380|gb|EFI33284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1562

 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 189/625 (30%), Positives = 310/625 (49%), Gaps = 79/625 (12%)

Query: 241  EDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRT 300
            E  H +   +++AEAA+ AKS FLA +SHEIRTPMN V+G+  +L+ T LD  Q+DY+  
Sbjct: 785  ESEHQVQLAREEAEAANRAKSDFLANMSHEIRTPMNAVIGLSQLLLQTSLDDRQRDYLNK 844

Query: 301  AQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVY 360
               S + L+ +IN++LD +K+E+GKLEL+  +F +  +LD + +LF   ++DKG+E+   
Sbjct: 845  ISNSSRMLLGIINDILDYSKIEAGKLELDMHTFRMDELLDQMKTLFGSTAEDKGLEIIFN 904

Query: 361  ISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSK 420
            IS  VP  L GD  R  Q+ TNL+GN++KFTEKGH+ + V+  E      EV  + +  +
Sbjct: 905  ISTDVPRILKGDSLRLGQVFTNLLGNAVKFTEKGHVELAVHKSEVRSQESEVRDQGTEVR 964

Query: 421  NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 480
            +   G    DR    +G +  ++D        S + ++ L+  ++DTG G+  E   R+F
Sbjct: 965  SQDLGQGTGDRG---QGLEAADRD--------SESKIVRLLFEIKDTGIGMDDEQVQRLF 1013

Query: 481  TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTS 540
             PF Q   S +R +GGTG+GL IS  LV RM G +   S P  GS F F           
Sbjct: 1014 QPFSQADTSTTRKYGGTGLGLVISHKLVQRMGGTLQVDSTPGQGSRFYFEI--------- 1064

Query: 541  NEHNSQQMNNQPNSVSSE----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
                   +   P S +++    F   + LVVD      +V R  ++    QV+   D   
Sbjct: 1065 ------DLPMAPESETTQECIGFDSHRVLVVDDHEAARQVLRNILESCMFQVKEAHDGRS 1118

Query: 597  CLSQIASGSKI---INMILVEQEV-WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS--- 649
             +  + +  +       + ++ ++  E D   +   ++ L   G       FL  N    
Sbjct: 1119 AVDAVVAADRAGEPYEFVFMDWKMPGELDGLQAAREIDRLYAEG-------FLKGNRPPF 1171

Query: 650  ---ISSSRANTSTDGVSIPSVIM-KPLRSSMLAASLQRAMGVG--NKGNIRNWELPSMSL 703
                +  R+    D V   +  + KP+ +S +  ++  A G       +   + +PS   
Sbjct: 1172 VVVSAYQRSELPEDSVECFNCFLSKPVTASSIFNAIAEATGKAPSYTRDDEQFTIPSFQ- 1230

Query: 704  RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 763
                 G  IL+ +DN +N +VA   L++ GAA+     G +A E++     FD   MD+Q
Sbjct: 1231 -----GYSILLAEDNALNQEVAWQMLEKTGAALSLAANGAEAVEMV-EAGSFDLVLMDLQ 1284

Query: 764  MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 823
            MP MDGFEAT+ I                 +E + +     +P++A++A V++    +  
Sbjct: 1285 MPVMDGFEATRKI-----------------LERFPD-----LPVIALSAAVMEEDRNKSR 1322

Query: 824  RSGMDGYVSKPFEAEQLYREVSRFF 848
            ++GM  ++SKP E+  LYR ++R+ 
Sbjct: 1323 QAGMRDHLSKPIESTSLYRTLARWL 1347


>gi|386314949|ref|YP_006011114.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens 200]
 gi|319427574|gb|ADV55648.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens 200]
          Length = 1770

 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 179/600 (29%), Positives = 294/600 (49%), Gaps = 89/600 (14%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++A+AA  AK  FLA +SHEIRTPMN ++GM  + + T LD  Q++YV   + + ++L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYVEKIERASQSLL 1089

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            S+IN++LD +K+E+GKL+++AV F L  +L+D+  +FS K   K +EL   ++  VP  L
Sbjct: 1090 SIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAVAPNVPRHL 1149

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GD  R  Q++ NLM N+IKFTE+G + +++ LVE+  D + +   +       SG  + 
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQNDDVTLRFSVRD-----SGIGLT 1204

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
            D   + K FK+F+Q                      DT                     S
Sbjct: 1205 DEQQA-KLFKSFSQ---------------------ADT---------------------S 1221

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+I K LV  M G IG  S    GSTF FT               Q  +
Sbjct: 1222 TTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYFTVKL------------QISS 1269

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             Q  +V  E +GM  LVVD       + R  ++ +G  V+ V    + +S+       + 
Sbjct: 1270 GQKLTVGQELEGMSVLVVDDNATARDIMRTALESMGFNVDTVRTGEEAVSRCMQHEYAVA 1329

Query: 610  MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
            +I      W+  +         +++      +   L+ ++ ++    T  + + +   I 
Sbjct: 1330 LI-----DWKMPSMDGLEAARQIQQQAKA--APRILMVSAHANHEFLTQIEQLGLAGYIS 1382

Query: 670  KPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
            KP+ +S L   +  A+G      +R   E     L   L G+++L+V+DN +NL+VA   
Sbjct: 1383 KPISASRLLDGIMNALGRAGILPVRRHNEALDPQLLLPLKGKRVLLVEDNEMNLEVATEF 1442

Query: 729  LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
            L++ G  +     G+ A + L     +D   MD QMP MDG++AT  IR+          
Sbjct: 1443 LEQVGIILSIATNGQIALDKL-SQQSYDLVLMDCQMPVMDGYQATMAIRQ---------- 1491

Query: 789  RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            R E++          H+P++AMTA+ +    E CLR+GM+ +++KP E   LY+ + ++ 
Sbjct: 1492 RPELA----------HIPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNILYQTLLKYL 1541


>gi|442319645|ref|YP_007359666.1| sensory box histidine kinase/response regulator [Myxococcus
           stipitatus DSM 14675]
 gi|441487287|gb|AGC43982.1| sensory box histidine kinase/response regulator [Myxococcus
           stipitatus DSM 14675]
          Length = 925

 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 186/606 (30%), Positives = 301/606 (49%), Gaps = 101/606 (16%)

Query: 260 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
           KS FLAT+SHEIRTPMN ++GM  ++++T L   Q++++ T + S +AL++L+N+VLD +
Sbjct: 256 KSLFLATMSHEIRTPMNAIIGMTGLMLETHLSEEQREFISTIRQSSEALLTLLNDVLDFS 315

Query: 320 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
           K+E+G+LE +   F+LR  ++ VL L + ++ +KG++L   IS +VP+ ++GD  R RQ+
Sbjct: 316 KIEAGRLEADLHPFDLRQCVESVLDLLAVRASEKGLDLGADISPQVPQVVMGDASRLRQV 375

Query: 380 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
           + NL+GN++KFTE G   V+V                                       
Sbjct: 376 LLNLVGNALKFTESGGAVVSVD-------------------------------------G 398

Query: 440 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
           T   D   +P+  S A        V+DTG GIP+  Q  +F PF Q+  +++R  GGTG+
Sbjct: 399 TRRGDAPDAPWVLSFA--------VQDTGPGIPVTKQQGLFQPFNQLDVAVTRKFGGTGL 450

Query: 500 GLSISKYLVGRMKGEIGFVS--IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS 557
           GL+ISK LV  M G I   S  +P  G+TF F+        T+  +      +QP     
Sbjct: 451 GLAISKRLVEAMGGRIWVESEGVPGRGTTFFFSLTLQAAPQTTAGYLR---ADQP----- 502

Query: 558 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEV 617
             QG + L+VD   I  ++    +Q  G +       ++ L+++  G++  +++L++Q++
Sbjct: 503 ALQGRRVLIVDDNAINRRLLGRQLQTWGAEPVEAGSGMEALAKLQPGAR-FDLVLIDQQM 561

Query: 618 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 677
              D       +     L      K+ LL  + +  RA       S  +V+ +P+++S L
Sbjct: 562 PGLDGPSLASRIKEREDL-----QKIPLLLLTSTGRRAVPPPGLFS--AVLSRPMKASHL 614

Query: 678 AASL-----QRAMGVGN----KGNIRNWELPS--MSLRHLLLGRKILIVDDNNVNLKVAA 726
             +L     Q    V      +G +   E P   + LR       IL+V+DN  N ++A+
Sbjct: 615 HDTLVSCFSQEVAPVNAEPPPQGTLAPRERPGDRVPLR-------ILLVEDNPTNQRLAS 667

Query: 727 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
             L R G  V     G++A E  M   +FD   MD+QMPEMDG EAT+           R
Sbjct: 668 LLLDRLGYQVQAASNGREALEWSM-RQRFDVVLMDLQMPEMDGLEATR-----------R 715

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
           +RR     E    V  +   ++AMTA+ + +  E+C  +GMD +++KP   E L   + R
Sbjct: 716 LRR-----ELPPKVQPW---VVAMTANAMDSDREQCFEAGMDDFLAKPIRVEALTAALVR 767

Query: 847 FFPPIP 852
              P P
Sbjct: 768 CQTPRP 773


>gi|445497405|ref|ZP_21464260.1| hybrid signal transduction histidine kinase J [Janthinobacterium sp.
            HH01]
 gi|444787400|gb|ELX08948.1| hybrid signal transduction histidine kinase J [Janthinobacterium sp.
            HH01]
          Length = 1020

 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 180/628 (28%), Positives = 305/628 (48%), Gaps = 106/628 (16%)

Query: 227  HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM 286
            H+F   V  + + +     + +  ++A+ A  AK  F+A +SHE+RTPMN VLGM  +L 
Sbjct: 488  HLFVGIVRDVTERKRAERELRQAMEQAQIASAAKDVFVANMSHELRTPMNAVLGMAHLLN 547

Query: 287  DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 346
             T L   Q  Y+   +ASG++L+ ++N++LD +K+ +GK+E+  V F L  +L  + S+ 
Sbjct: 548  TTGLSPEQGRYLEMIRASGQSLLGILNDILDFSKMNAGKIEMHPVRFQLDDVLHSLASIM 607

Query: 347  SGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 406
            S    +K +EL + +   VP  L+GD  R +QI+ NL GN+IKFTE+G + V   LVE  
Sbjct: 608  SISVGEKNLELCLGVELDVPRALVGDALRLQQILVNLTGNAIKFTEQGEVSV---LVE-- 662

Query: 407  VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 466
                                                        +++    + L  +V D
Sbjct: 663  --------------------------------------------RAAGEGAVLLRFTVRD 678

Query: 467  TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
            TG G+  E  +R+F+PF Q   S +R  GGTG+GL+ISK L+  + G I   S   +GS 
Sbjct: 679  TGIGMSEEQLARLFSPFTQGDLSTTRRFGGTGLGLTISKGLIELLGGAIEVSSTVGLGSA 738

Query: 527  FTFT--AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL 584
            F+FT     G+G+      + + +                LVVD  P         IQ  
Sbjct: 739  FSFTLPMKLGDGAEAPKPAHRRHL----------------LVVDDNPTSRSYLGKTIQAW 782

Query: 585  GIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLF 644
            G   ++V+   + L+ + SG +  ++ LV+ ++ + D   +      +R +     + + 
Sbjct: 783  GWTCDIVATGTEALALLRSG-RAYDVALVDWQMPDMDGPAT------MRAVQQESGTPVI 835

Query: 645  LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM----GVGNKGNIRNWELPS 700
             + N+   S+     + V+ P  + KP+ +S L  ++Q A+    G    G       P+
Sbjct: 836  CMVNAYGRSKLVQDMEAVTAPVFLTKPVTASSLYDAVQTALAHRHGEAAAG-------PA 888

Query: 701  MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
            +    +L G ++L+V+DN +N +VA   L++ GA V   E G++A +LL    Q D   M
Sbjct: 889  VPGPKVLSGVRVLLVEDNPINQQVARGILEQAGAVVAVGENGEEALKLLRDGLQCDLVLM 948

Query: 761  DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
            D+QMP MDGF AT+ I            RGE+ +          +P++AMTA V+++  E
Sbjct: 949  DVQMPVMDGFTATRAI------------RGELRMT---------LPVIAMTAGVMESERE 987

Query: 821  ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             C+ +GMD ++ KP + +Q++  +++  
Sbjct: 988  RCIAAGMDDFIGKPVDVDQMFATIAKHL 1015


>gi|359447438|ref|ZP_09237034.1| hypothetical protein P20439_3403 [Pseudoalteromonas sp. BSi20439]
 gi|358038719|dbj|GAA73283.1| hypothetical protein P20439_3403 [Pseudoalteromonas sp. BSi20439]
          Length = 789

 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 183/638 (28%), Positives = 309/638 (48%), Gaps = 104/638 (16%)

Query: 218 ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 277
           ++ I +L+G +  ++  RI    E    +++ K+ AE A +AKS+FLA++SHEIRTPMNG
Sbjct: 246 LIAIGALIGSL-HSSEQRIETEAE----LVKAKEAAEQAVIAKSEFLASMSHEIRTPMNG 300

Query: 278 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337
           VLGML+++  T LD  Q+ +++ AQ+S ++L+ +IN++LD +K+E+GKL++E + FNL  
Sbjct: 301 VLGMLNLIQTTSLDQQQRHHIKLAQSSAESLLGIINDILDFSKIEAGKLDIENIQFNLPK 360

Query: 338 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 397
           +L +++  F+ K++    +L +  +      ++ DP R RQI+ NL+ N+IKFT+ G + 
Sbjct: 361 LLGEIVESFALKAESNNTQLILDTTHVSTSEIVCDPNRLRQILNNLIANAIKFTQNGQVL 420

Query: 398 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 457
           VT   +E+ +D+  +E                                            
Sbjct: 421 VTAT-IEKTIDNTTLE-------------------------------------------- 435

Query: 458 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 517
                ++ DTG GI L+ Q ++F  F Q   S +R +GGTG+GL+I K L   M GE+  
Sbjct: 436 ----CAIIDTGIGISLDKQKQLFDSFTQADASTTRQYGGTGLGLAIVKQLCELMGGEVSV 491

Query: 518 VSIPNIGSTFTF----TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIR 573
            S+PN GSTF F    T+V         +H                Q  + L+VD   + 
Sbjct: 492 NSLPNEGSTFAFSVKITSVIDQAFDLDCQH---------------IQAKRILIVDNSEMN 536

Query: 574 AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI-INMILVEQEVWEKDTSVSTLFVNNL 632
           A ++   +   G  V VV D  +  + I++  ++  ++ +++    E             
Sbjct: 537 ATITEKQLMLWGADVSVVCDYEEVETYISNHQQMPPDVAIIDSSFLEPVAHPQA------ 590

Query: 633 RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN 692
            KL    +    L+   +SSS+++    G    ++I KPL +  L  +L +         
Sbjct: 591 EKLKHFLEKSHILIMAPMSSSKSSLFY-GDKETALIFKPLTAIGLYDTLVKGTLAEQPKE 649

Query: 693 IRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--M 750
           +   EL +M+      G  +L+V+DN VN  VA A LK+        E G+ A   L   
Sbjct: 650 V---ELSAMNTPKKAKGH-VLLVEDNKVNQVVAGALLKQAELTFDIAEDGEDALTKLNQA 705

Query: 751 PPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM 810
             + +    MD QMP MDG++AT  IRE      NR                  +PI+A+
Sbjct: 706 TANTYQLILMDCQMPIMDGYQATMAIREGLAGQENRA-----------------IPIIAL 748

Query: 811 TADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           TA+ +    E+CL +GM+ Y+SKP +   ++ ++ ++ 
Sbjct: 749 TANAMHGDKEKCLNAGMNDYLSKPLDGPAMHAKLQQWL 786


>gi|16329648|ref|NP_440376.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|383321389|ref|YP_005382242.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr. GT-I]
 gi|383324559|ref|YP_005385412.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr.
            PCC-P]
 gi|383490443|ref|YP_005408119.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr.
            PCC-N]
 gi|384435709|ref|YP_005650433.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803]
 gi|451813808|ref|YP_007450260.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1652132|dbj|BAA17056.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|339272741|dbj|BAK49228.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803]
 gi|359270708|dbj|BAL28227.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr. GT-I]
 gi|359273879|dbj|BAL31397.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr.
            PCC-N]
 gi|359277049|dbj|BAL34566.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr.
            PCC-P]
 gi|407957531|dbj|BAM50771.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|451779777|gb|AGF50746.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1462

 Score =  253 bits (647), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 191/615 (31%), Positives = 298/615 (48%), Gaps = 93/615 (15%)

Query: 247  MELKKK---AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
            +EL+K    AEAA+ AK +FLA +SHEIRTPMNGV+GM ++L+ T+L++ Q DYV+T + 
Sbjct: 762  LELEKATWAAEAANRAKGEFLAMMSHEIRTPMNGVIGMTELLIMTDLNLQQLDYVQTIRQ 821

Query: 304  SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 363
            SG+ L+++IN++LD +K+E+ KL LE  +F LR +++ VL +F   ++ K +EL   I  
Sbjct: 822  SGETLLTIINDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDP 881

Query: 364  RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 423
            + P  ++GD  R RQI++NL+GN++KFTEKG + +TV                       
Sbjct: 882  QTPARILGDQVRLRQILSNLIGNALKFTEKGEVVLTV----------------------- 918

Query: 424  SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483
             G P  D   S+             P  S       +  ++ DTG GIPL+ Q R+F  F
Sbjct: 919  KGEPF-DPAESYHTILNL-------PHPSH-----RICFNLRDTGIGIPLDRQDRLFKSF 965

Query: 484  MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 543
             QV  S +R +GGTG+GL IS+ L   M G +   S P +GS F F  +    +    E 
Sbjct: 966  SQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCILTTAQAPALAEA 1025

Query: 544  NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 603
            +S Q          + +G + L+VD      ++ +   Q  G+     +     L   A 
Sbjct: 1026 DSVQ----------QMKGKQVLIVDDNETNRRILQDQCQAWGLVCHCFTSGESALDWFAR 1075

Query: 604  GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
               +   IL   ++   +    TL  ++LR+   G    + LL++ + +     S     
Sbjct: 1076 CPDLDAAIL---DLQMPNMDGITL-AHHLRQFAQGKDLPIILLSSGLVAGADELSV---- 1127

Query: 664  IPSVIMKPLRSSMLAASL----QRAMGVGNKG-NIRNWELPSM-----------SLRHLL 707
              +V+ KP+R S++  SL    Q ++G+ +        +LP             +   L 
Sbjct: 1128 FQTVLNKPVRQSLIFDSLVNIFQGSIGLADYAPQFDQLDLPEFVPDGDGLPTEDNATSLQ 1187

Query: 708  LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
               +IL+ +DN VN KVA   L   G  V     G++  + L     +D   MD+QMP M
Sbjct: 1188 PALQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKF-YDLVLMDMQMPVM 1246

Query: 768  DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
            DG  A + IR+             + +E           I+AMTA+ +    +ECL +GM
Sbjct: 1247 DGITACRHIRQT------------LPLERQPR-------IVAMTANAMPGDRQECLDAGM 1287

Query: 828  DGYVSKPFEAEQLYR 842
            DGY+SKP    QL +
Sbjct: 1288 DGYISKPISINQLRK 1302


>gi|302786022|ref|XP_002974782.1| hypothetical protein SELMODRAFT_451443 [Selaginella moellendorffii]
 gi|300157677|gb|EFJ24302.1| hypothetical protein SELMODRAFT_451443 [Selaginella moellendorffii]
          Length = 823

 Score =  253 bits (647), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 185/619 (29%), Positives = 304/619 (49%), Gaps = 73/619 (11%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           + E + KAE+A  A+S+FLA +SHEIRTP+NGV+GM  +L+DT+    Q++ + T + SG
Sbjct: 256 LAEARDKAESAAKARSEFLAVMSHEIRTPLNGVIGMASVLLDTDPTPDQEECLETIRTSG 315

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
           + L+S+IN++LD +K+++GKL +  V  NLR++++DV S+ + + + KGVEL V+     
Sbjct: 316 ECLLSIINDILDFSKIDAGKLTIAPVPCNLRSLVEDVGSMLALRVEPKGVELVVHYDSPF 375

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
               + D  R RQ++ NL+GNS KFT  GHI V V L+ +        T+    ++    
Sbjct: 376 FAVSV-DTIRLRQVLINLIGNSCKFTHAGHILVNVSLLCKSCQKQLKATDFWECRS---- 430

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
              +   +S+KG +  +      P +           S+ D+G GI  +    +F  F Q
Sbjct: 431 --CSKDVNSFKGRELDSDAKHVKPVEY-------FKFSISDSGIGIAEDKLGLLFEKFSQ 481

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
                S  +GGTG+GL++SK LV  M GEI   S   +GSTF+F+          +E N 
Sbjct: 482 CDQLTSNMYGGTGLGLAVSKSLVELMGGEIVVESREGVGSTFSFSIPL--EIDVVSEKNR 539

Query: 546 QQMNNQPNSVSSEFQGM-KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS- 603
            Q+   P   SS FQ   + LV+D   I  +V    I+  GI+ +   D    L  +A+ 
Sbjct: 540 HQV---PLLYSSRFQARPRILVIDNHKITRQVMCEQIESWGIECQCSGDVASALKLLANR 596

Query: 604 -GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
               +++ +LV  E ++K   +        +++   F    F+L   +   R N + +  
Sbjct: 597 FHVAVVDNVLV--ETFQKKLQI--------KRIAEEFPGTKFILLKPV-GHRVN-AQEAY 644

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM-------------SLRHLLLG 709
                + +PLR S L  +L +   +    +      P++             + RH    
Sbjct: 645 GFSCTLSRPLRQSTLKDALLKTFNLLGFKSFEEASRPALASSNRSKAGDKAQTRRH---- 700

Query: 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
            K+L+V+DN VN  VA   L   G  V     G++A  ++  P ++D  FMD  MP +DG
Sbjct: 701 PKVLVVEDNKVNQMVAIRLLNNLGCTVDVACNGQEAVSIVDKPVEYDLIFMDCHMPVLDG 760

Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
           F+A+++IR  +                         PI+A+TA  +++  E+CL  GMD 
Sbjct: 761 FQASRLIRSKQK----------------------LTPIVALTAATMESELEKCLECGMDD 798

Query: 830 YVSKPFEAEQLYREVSRFF 848
           YV KP   ++L R + ++ 
Sbjct: 799 YVRKPCTKQELQRVLHKWL 817


>gi|392379678|ref|YP_004986837.1| putative histidine kinase [Azospirillum brasilense Sp245]
 gi|356882045|emb|CCD03046.1| putative histidine kinase [Azospirillum brasilense Sp245]
          Length = 1217

 Score =  253 bits (646), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 191/633 (30%), Positives = 301/633 (47%), Gaps = 84/633 (13%)

Query: 233  VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 292
            V  IA+ E   H   E K +AE A  AKS FLA +SHEIRTPMNGV  M +ML  T+L  
Sbjct: 498  VTEIAQRETALH---EAKNQAEEATRAKSSFLAVMSHEIRTPMNGVTAMAEMLDQTDLTE 554

Query: 293  TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 352
             Q   +   ++S +AL+ +IN++LD +K+E+GK+E+E+V F+   ++++   L +G+ ++
Sbjct: 555  EQHGMLGVIRSSAQALLIIINDILDFSKIEAGKMEIESVPFSPLEVVEESAELVAGRIEE 614

Query: 353  KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 412
            KG++L+V +   VP+ L GDP R RQI+ NLMGN++KFTEKG + VTV            
Sbjct: 615  KGLQLSVDVGPGVPDRLTGDPTRVRQILINLMGNAVKFTEKGSVAVTV------------ 662

Query: 413  ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 472
                  S    SG   A              DG            + L  +V D+G G+ 
Sbjct: 663  ------SAEPRSGMDGA-------------ADGG-----------VTLRFAVTDSGIGLT 692

Query: 473  LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532
             E ++++F PF Q   S SR  GGTG+GL+I   L   M G IG  S+   GSTF F   
Sbjct: 693  EEQRAKLFQPFQQADSSTSRRFGGTGLGLTICHKLCTMMGGGIGVDSVFGEGSTFWFELP 752

Query: 533  FGNGSSTSN------EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
            F   +  ++              +    V+  F G     ++     A ++      L  
Sbjct: 753  FAVAAPIADCPQPRTPAAPAVAVDDARVVAVGFDGAGRQALEGILATAGIAPLGWYDLTG 812

Query: 587  QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL--FVNNLRKLGCGFQSKLF 644
             +E V+      +Q   G  +   +LV   V + +T+++     V +    G    + + 
Sbjct: 813  GLEAVTG-----TQAGPGRLV---VLVNGGV-QSETAIACCRAIVQSPAFAGGPVPAVIL 863

Query: 645  LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN--------KGNIRNW 696
             +  +++S+   +  D + +   +  PLR   +  ++  A+G  +        + +   W
Sbjct: 864  AVPRALASTM--SEADRIGLLCAVNLPLRRRRVWLAIAAALGRASLERRSEPREHDATGW 921

Query: 697  ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 756
            E P +    +  G  IL+ +DN +N  V    L + G A+   + G +A E+L  P ++ 
Sbjct: 922  EPPPIE-SAIAAGALILVAEDNPINQTVIRRMLNKRGYAIEMADNGARALEMLQ-PGRYG 979

Query: 757  ACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 816
                D  MPEMDGF  T  IR  E      +  G V+           +PI+A+TAD + 
Sbjct: 980  LLLTDFHMPEMDGFGLTHAIRARERELTEALGAGAVT----------RLPIVALTADALP 1029

Query: 817  ATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
             T + CL +GMDGY++KP E+  L   + RF P
Sbjct: 1030 GTQQRCLEAGMDGYLTKPIESRLLAETLDRFLP 1062


>gi|407778474|ref|ZP_11125738.1| hybrid sensory histidine kinase [Nitratireductor pacificus pht-3B]
 gi|407299845|gb|EKF18973.1| hybrid sensory histidine kinase [Nitratireductor pacificus pht-3B]
          Length = 824

 Score =  253 bits (646), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 201/678 (29%), Positives = 307/678 (45%), Gaps = 130/678 (19%)

Query: 207 WPLLAISTSI--GILVIASLVGHIFQATVNRIAKVEEDYH----GMMELKKKAEAADVAK 260
           W LL +S +I    L+IA   G +F   +NR++K  +D H     +   K KA++AD  K
Sbjct: 232 WGLLGVSLAIVSACLLIA---GRVFVPMMNRVSKAHQDLHDANISLASEKIKAQSADRTK 288

Query: 261 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 320
           S+FLA +SHEIRTPMNGV+GM ++L  T LD  Q  +V     SG AL+++IN++LD +K
Sbjct: 289 SEFLANMSHEIRTPMNGVMGMAELLARTNLDQRQAMFVDVIVKSGTALLTIINDILDFSK 348

Query: 321 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 380
           +++G+L+L+   F L   ++DV +L S +  +K +EL V +   +P + IGD GRFRQ+ 
Sbjct: 349 IDAGQLKLDTAPFKLGEAIEDVAALVSTRVAEKDLELIVRVDPDLPLSFIGDVGRFRQVA 408

Query: 381 TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 440
           TNL+GN++KFTE+GH+ + V                       SG               
Sbjct: 409 TNLVGNAVKFTERGHVLIDV-----------------------SGTV------------- 432

Query: 441 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 500
             +DGS             + +SVEDTG GIP +    +F  F QV  S +R H GTG+G
Sbjct: 433 --RDGSAL-----------VTISVEDTGIGIPQDKLDVVFEKFAQVDSSSTRRHEGTGLG 479

Query: 501 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 560
           L+I+  LV  M G +   S    GSTF FT                  N  P +   +  
Sbjct: 480 LAIASRLVELMGGSMQAKSEIGKGSTFAFTIPL----------EVDHANCTPKTAPIDVS 529

Query: 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEK 620
           G +  V+D  PI  ++    ++  G          +C    A+ S  + +  +E+ V + 
Sbjct: 530 GSRVFVIDDNPINREILLEQLKSWG---------FEC---AAAESGAVGLAFLERSV-QL 576

Query: 621 DTSVSTLFVNNLRKLGCGFQSKLFLLANSISS----------SRANTSTDGV--SIPSVI 668
           D  V  + ++       G      + AN  ++           +A+TS   +   I + +
Sbjct: 577 DARVDCVILDYQMPDMNGADVAKRIKANPATADIPLVLLTSVDQADTSRLAMECGIAAQL 636

Query: 669 MKPLRSSMLAASLQRAMGVGNKGNIRNWELP------------------SMSLRHLLLGR 710
            KP RSS L  ++   M     G+      P                  S S      G 
Sbjct: 637 NKPTRSSALLETIVSVMQAARAGSDMPAPQPIQLRPAQTRLSNAVERGLSSSRSQRGEGL 696

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            +L+ +DN VN  V +  L   G        GK A E +    +     MD+ MPEM+G+
Sbjct: 697 DVLVAEDNEVNQLVFSQVLDGLGLRYRIAGNGKTAVE-MHRAFRPKIMLMDVSMPEMNGY 755

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
           EAT  IR+ E    +                  H PI+ +TA  ++   E+CL +GMD Y
Sbjct: 756 EATGAIRQTEAATGD------------------HTPIIGITAHALKGDREKCLDAGMDDY 797

Query: 831 VSKPFEAEQLYREVSRFF 848
           +SKP   ++L   + R+ 
Sbjct: 798 LSKPISPQKLADMIERWM 815


>gi|302760541|ref|XP_002963693.1| hypothetical protein SELMODRAFT_451444 [Selaginella moellendorffii]
 gi|300168961|gb|EFJ35564.1| hypothetical protein SELMODRAFT_451444 [Selaginella moellendorffii]
          Length = 825

 Score =  253 bits (646), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 185/619 (29%), Positives = 304/619 (49%), Gaps = 73/619 (11%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           + E + KAE+A  A+S+FLA +SHEIRTP+NGV+GM  +L+DT+    Q++ + T + SG
Sbjct: 258 LAEARDKAESAAKARSEFLAVMSHEIRTPLNGVIGMASVLLDTDPTPDQEECLETIRTSG 317

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
           + L+S+IN++LD +K+++GKL +  V  NLR++++DV S+ + + + KGVEL V+     
Sbjct: 318 ECLLSIINDILDFSKIDAGKLTIAPVPCNLRSLVEDVGSMLALRVEPKGVELVVHYDSPF 377

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
               + D  R RQ++ NL+GNS KFT  GHI V V L+ +        T+    ++    
Sbjct: 378 FAVSV-DTIRLRQVLINLIGNSCKFTHAGHILVNVSLLCKSCQKQLKATDFWECRS---- 432

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
              +   +S+KG +  +      P +           S+ D+G GI  +    +F  F Q
Sbjct: 433 --CSKDVNSFKGRELDSDAKHVKPVEY-------FKFSISDSGIGIAEDKLGLLFEKFSQ 483

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
                S  +GGTG+GL++SK LV  M GEI   S   +GSTF+F+          +E N 
Sbjct: 484 CDQLTSSMYGGTGLGLAVSKSLVDLMGGEIVVESREGVGSTFSFSIPL--EIDVVSEKNR 541

Query: 546 QQMNNQPNSVSSEFQGM-KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS- 603
            Q+   P   SS FQ   + LV+D   I  +V    I+  GI+ +   D    L  +A+ 
Sbjct: 542 HQV---PLLYSSRFQARPRILVIDNHKITRQVMCEQIESWGIECQCSGDVASALKLLANR 598

Query: 604 -GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
               +++ +LV  E ++K   +        +++   F    F+L   +   R N + +  
Sbjct: 599 FHVAVVDNVLV--ETFQKKLQI--------KRIAEEFPGTKFILLKPV-GHRVN-AQEAY 646

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM-------------SLRHLLLG 709
                + +PLR S L  +L +   +    +      P++             + RH    
Sbjct: 647 GFSCTLSRPLRQSTLKDALLKTFNLLGFKSFEEASRPALASSNRSKAGDKAQTRRH---- 702

Query: 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
            K+L+V+DN VN  VA   L   G  V     G++A  ++  P ++D  FMD  MP +DG
Sbjct: 703 PKVLVVEDNKVNQMVAIRLLNNLGCTVDVACNGQEAVSIVDKPVEYDLIFMDCHMPVLDG 762

Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
           F+A+++IR  +                         PI+A+TA  +++  E+CL  GMD 
Sbjct: 763 FQASRLIRSKQK----------------------LTPIVALTAATMESELEKCLECGMDD 800

Query: 830 YVSKPFEAEQLYREVSRFF 848
           YV KP   ++L R + ++ 
Sbjct: 801 YVRKPCTKQELQRVLHKWL 819


>gi|163760978|ref|ZP_02168056.1| two component sensor kinase/response regulator hybrid [Hoeflea
            phototrophica DFL-43]
 gi|162281759|gb|EDQ32052.1| two component sensor kinase/response regulator hybrid [Hoeflea
            phototrophica DFL-43]
          Length = 1337

 Score =  253 bits (646), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 205/724 (28%), Positives = 332/724 (45%), Gaps = 136/724 (18%)

Query: 187  NFGDPFRKHEMRCRFKQK----APWPLLAISTSIGILVIASLVG--HIFQATVNRIAKVE 240
            +FG+  +  E R + ++      P+ +   S     L + + VG  +   AT + I   +
Sbjct: 690  DFGEGEKASESREKIRRTIENGKPYAVERKSAKNRWLKVDAKVGSSNAIIATFSDITATK 749

Query: 241  EDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRT 300
            +    + +L  KAE AD AKS+FLA +SHEIRTPMNGVLGM ++L  TELD  Q+ +   
Sbjct: 750  QREAELHDLLGKAETADRAKSEFLANMSHEIRTPMNGVLGMAELLSRTELDTRQRTFADI 809

Query: 301  AQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVY 360
               SG AL+++IN++LD +K+++G+L LE+  F+LR  ++DV +L S ++ +K +EL V 
Sbjct: 810  IVKSGTALLTIINDILDFSKIDAGQLTLESQPFDLREAIEDVATLISSRAAEKDIELIVR 869

Query: 361  ISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSK 420
            I   +P+ L+GD GR RQ++TNL+GN+IKFTE GH+ + V                    
Sbjct: 870  IDPALPDCLVGDVGRIRQVMTNLVGNAIKFTETGHVLIEV-------------------- 909

Query: 421  NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 480
               +G P +              +GS           ++L + V DTG GIP E    +F
Sbjct: 910  ---TGSPAS--------------EGS-----------VDLTLRVHDTGIGIPPEKLDAVF 941

Query: 481  TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTS 540
              F QV  S +R H GTG+GL+I+  LV  M G I   S P  GS F             
Sbjct: 942  DKFSQVDTSSTRRHEGTGLGLAITSRLVALMDGTISAESTPGEGSVFCVKITM------P 995

Query: 541  NEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQ 600
             E  ++ +   P  VS    G + LV+D   +  ++    +              + LS 
Sbjct: 996  VEKRTETVRIAPVDVS----GARVLVIDDNAVNREILIEQLSAWEFDACAAVSGEEGLSV 1051

Query: 601  IASGSKI---INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN-SISSSRAN 656
            + + S     +N ++++ ++ E+D     +    +RK        + +L +  + +S  +
Sbjct: 1052 LKAASDYNVDVNAVILDYQMPEQD---GAMVARAIRKNYSAEALPIIMLTSMDVKASEPD 1108

Query: 657  TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG---------------------------- 688
              T+ V   + +MKP+RSS L   L + + V                             
Sbjct: 1109 IQTEIVQ--ATLMKPVRSSELLEKLTKVLQVAAQPKPAAALPQSPADTVQDHDAAVMGAV 1166

Query: 689  -------NKGNIRNWELPSMSLR---------HLLLGR-KILIVDDNNVNLKVAAAGLKR 731
                   +  + +  +LPS+S +             GR +I++ +DN VN  V    L+ 
Sbjct: 1167 AETGPADDAWSAKAQDLPSVSDQSAPAQQSDAERASGRLEIMVAEDNEVNQIVFTQILED 1226

Query: 732  YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 791
             G     V+ G  A EL    +      MD+ MP M+G +AT+ IR+ E           
Sbjct: 1227 LGVKYQIVDNGGSAVELWKMANPA-LILMDVSMPVMNGHQATEAIRKAE----------- 1274

Query: 792  VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP- 850
                   + +  H P++ +TA  +    E+CL++GMD Y+SKP   E+L  ++  + P  
Sbjct: 1275 -----AADPALGHTPVIGVTAHALTGDMEKCLQAGMDDYLSKPISPEKLAEKIREWLPAE 1329

Query: 851  IPDR 854
            I DR
Sbjct: 1330 IADR 1333


>gi|152999371|ref|YP_001365052.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
 gi|151363989|gb|ABS06989.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
          Length = 1782

 Score =  253 bits (646), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 181/610 (29%), Positives = 304/610 (49%), Gaps = 97/610 (15%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++A+AA  AK  FLA +SHEIRTPMN ++GM  + + TELD  Q++YV   + + ++L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            S+IN++LD +K+E+GKL+++++ F L  +L+D+  +FS K+  K +EL   ++  VP  L
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSIPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYL 1152

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GD  R  Q++ NLM N+IKFTE+G + +++ LVE+  D + +   +  S   L+    A
Sbjct: 1153 LGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQA 1212

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                  K FK+F Q                      DT                     S
Sbjct: 1213 ------KLFKSFTQ---------------------ADT---------------------S 1224

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+I K LV  M G+IG  S    GSTF FT            H S   +
Sbjct: 1225 TTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKL---------HIS---D 1272

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             Q   +  E +GM  LVVD       + R  ++ +G +V+ V    + +S+    +  + 
Sbjct: 1273 GQKLVLEQELEGMSVLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAISRCLLQAYEVA 1332

Query: 610  MILVEQEVWEK------DTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
            +I      W+       +T+         +           L+ ++ +     T  + ++
Sbjct: 1333 LI-----DWKMPNMDGLETARQIQLQAQSQSQSQPQSQPKILMVSAHADREFLTQIEQLA 1387

Query: 664  IPSVIMKPLRSSMLAASLQRAMGVGNKGNI---RNWELPSMSLRHLLLGRKILIVDDNNV 720
            +   I KP+ +S L   +  A  +G +G +   R  E  +  L   L G++IL+V+DN +
Sbjct: 1388 LAGYISKPISASRLLDGIMNA--IGREGILPVRRRTEELAPQLLLPLQGKRILLVEDNEM 1445

Query: 721  NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
            NL+VA+  L++ G  +     G+ A + L   H FD   MD QMP MDG++AT+ IR   
Sbjct: 1446 NLEVASEFLEQVGIILSIATNGQIALDKLSQQH-FDLVLMDCQMPVMDGYQATQAIR--- 1501

Query: 781  HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                   +R E++          ++P++AMTA+ +    + C+R+GM+ +++KP E   L
Sbjct: 1502 -------KRPELA----------NLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVL 1544

Query: 841  YREVSRFFPP 850
            Y+ + ++  P
Sbjct: 1545 YQTLLKYLAP 1554


>gi|120597632|ref|YP_962206.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|120557725|gb|ABM23652.1| PAS/PAC sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
          Length = 1771

 Score =  253 bits (646), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 179/600 (29%), Positives = 294/600 (49%), Gaps = 89/600 (14%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++A+AA  AK  FLA +SHEIRTPMN ++GM  + + T LD  Q++YV   + + ++L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYVEKIERASQSLL 1089

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            S+IN++LD +K+E+GKL+++AV F L  +L+D+  +FS K   K +EL   ++  VP  L
Sbjct: 1090 SIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAVAPNVPRHL 1149

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GD  R  Q++ NLM N+IKFTE+G + +++ LVE+  D + +   +       SG  + 
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQNDDVTLRFSVRD-----SGIGLT 1204

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
            D   + K FK+F+Q                      DT                     S
Sbjct: 1205 DEQQA-KLFKSFSQ---------------------ADT---------------------S 1221

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+I K LV  M G IG  S    GSTF FT               Q  +
Sbjct: 1222 TTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYFTVKL------------QISS 1269

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             Q  +V  E +GM  LVVD       + R  ++ +G  V+ V    + +S+       + 
Sbjct: 1270 GQKLTVGQELEGMSVLVVDDNATARDIMRTALESMGFNVDTVRTGEEAVSRCIQHEYAVA 1329

Query: 610  MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
            +I      W+  +         +++      +   L+ ++ ++    T  + + +   I 
Sbjct: 1330 LI-----DWKMPSMDGLEAARQIQQQAKA--APRILMVSAHANHEFLTQIEQLGLAGYIS 1382

Query: 670  KPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
            KP+ +S L   +  A+G      +R   E     L   L G+++L+V+DN +NL+VA   
Sbjct: 1383 KPISASRLLDGIMNALGRAGILPVRRHNEALDPQLLLPLKGKRVLLVEDNEMNLEVATEF 1442

Query: 729  LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
            L++ G  +     G+ A + L     +D   MD QMP MDG++AT  IR+          
Sbjct: 1443 LEQVGIILSIATNGQIALDKL-SQQSYDLVLMDCQMPVMDGYQATMAIRQ---------- 1491

Query: 789  RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            R E++          H+P++AMTA+ +    E CLR+GM+ +++KP E   LY+ + ++ 
Sbjct: 1492 RPELA----------HLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNILYQTLLKYL 1541


>gi|220907616|ref|YP_002482927.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864227|gb|ACL44566.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 887

 Score =  253 bits (645), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 212/675 (31%), Positives = 315/675 (46%), Gaps = 112/675 (16%)

Query: 209 LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 268
           L A++  +GI +  +   H+ +    +  ++ +    ++  K+ AEAA+ AK +FLA +S
Sbjct: 283 LEAVAAQVGIALAQA---HLLEQETRQREQLWQQNLALVAAKQAAEAANQAKGRFLAVMS 339

Query: 269 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 328
           HEIRTPMN V+GM  +L+DT L   Q+DYV T   SG+AL+ LIN++LD +K+ESGKLEL
Sbjct: 340 HEIRTPMNAVIGMTTLLLDTSLTPQQRDYVETIHGSGEALLCLINDILDFSKIESGKLEL 399

Query: 329 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 388
           E   FNLR  L++ + L + ++ +KG+ELA  IS   PE + GD  R RQI+ NL+ N+I
Sbjct: 400 ETRPFNLRTCLEEAIDLLATRATEKGIELAYLISPPTPEQIQGDVIRLRQILVNLINNAI 459

Query: 389 KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 448
           KFTE G + ++V              E+   ++ LSG                   G   
Sbjct: 460 KFTEAGEVVISV-----------TAREVFPLRSQLSG-------------------GEEP 489

Query: 449 PFKSSSA--------DLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 500
           PF  S+A            +  +VEDTG GIP++   R+F PF QV  S+ R +GGTG+G
Sbjct: 490 PFSVSAAYETLPYEMPQYEIQFAVEDTGIGIPIDRLDRLFRPFSQVDSSVRRHYGGTGLG 549

Query: 501 LSISKYLVGRMKGEI-------------------GFVSI-PNIGSTFTFTAVFGNGSSTS 540
           L+ISK L   M G I                   GF  +    GSTF FT +        
Sbjct: 550 LAISKKLAETMGGRIWVSSRDETGAIGRAGEPPTGFTDVLLRQGSTFYFTVLVPALPQPP 609

Query: 541 NEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQ 600
                  +  +           + L+VD  P   K+   + Q  G      +   + L +
Sbjct: 610 APPPPPGLAGK-----------RLLIVDDNPTYRKILSLYSQFWGTLPYTFAAGSEALRR 658

Query: 601 IASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR-ANTST 659
           +       ++ +++  + + D       V  +R+L       L  L N+    R A+   
Sbjct: 659 LQQQPG-FDLAIIDDRLADMD---GLSLVEQIRQLPQTATLPLIFLTNTSQRERVASHLQ 714

Query: 660 DGVSIPSVIMKPLRSSMLAASLQRAMGV--GNKGNIRN--WELPSMSLRHLLLGRKILIV 715
           +G+    ++ KPLR S L  +L + + V       + N     P +  ++LL   +IL+ 
Sbjct: 715 NGL----ILTKPLRQSQLQDALLKLLSVEPSATAALENPPSSFPPLGSQNLL---RILLA 767

Query: 716 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI 775
           +DN VN KVA   LKR G      + G +  E L     +D   MD+QMPEMDG  AT+ 
Sbjct: 768 EDNAVNQKVALHLLKRLGYGADVAKNGIQVLEALR-QQSYDVILMDVQMPEMDGLTATQQ 826

Query: 776 IREMEHNFNNRIRRGEVSIEAYENVSNFHVP-ILAMTADVIQATYEECLRSGMDGYVSKP 834
           IR                       S    P I+AMTA+ +Q   E CL +GMD YVSKP
Sbjct: 827 IRR----------------------SGLPQPRIIAMTANAVQGDREACLEAGMDDYVSKP 864

Query: 835 FEAEQLYREVSRFFP 849
                L   + +  P
Sbjct: 865 IRLPDLVEALQKCCP 879


>gi|13473203|ref|NP_104770.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
 gi|14023951|dbj|BAB50556.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
          Length = 1391

 Score =  253 bits (645), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 190/642 (29%), Positives = 294/642 (45%), Gaps = 126/642 (19%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + E +++A  AD AKS+FLA +SHEIRTPMNGVLGM ++L  + LD  Q+ +      SG
Sbjct: 826  LSEARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDPKQKTFTDIIVKSG 885

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
             AL+++IN++LD +K+++G++ L+   FNL   ++DV +L S ++++K +EL V +  R+
Sbjct: 886  NALLTIINDILDFSKIDAGQMVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRVEPRL 945

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
                +GD GR RQI+TNL+GN++KFT++GH+ V V                     T   
Sbjct: 946  ESLFVGDVGRIRQIVTNLLGNAVKFTDEGHVLVDV---------------------TGER 984

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
             P   R                            L +SV DTG GIP E    +F  F Q
Sbjct: 985  VPTGTR----------------------------LTISVTDTGIGIPEEKLKLVFEKFSQ 1016

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
            V  S +R H GTG+GL+I+  LV  M G IG  S    GSTF FT         + + N 
Sbjct: 1017 VDTSSTRRHEGTGLGLAITSRLVELMGGTIGVESAEGKGSTFWFTVTL----PRAGQQNG 1072

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL---GIQVEVVSDQLQCLSQIA 602
            Q++   P  V+    G + L+VD   +   +    +          E  ++ L+ L   A
Sbjct: 1073 QRI--MPVDVT----GARVLIVDDNAVNRAILTEQMTSWTFDSCAAESGAEGLKVLIAAA 1126

Query: 603  SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
            +    ++ ++++ ++ E   +     V N      G      ++  S+  S ANTS   +
Sbjct: 1127 AYGVPVDCVVLDYQMPEMSGAEMARIVRNT----GGLADTPIIMLTSVDQSLANTSYRDL 1182

Query: 663  SIPSVIMKPLRSSM----LAASLQRAMGVGNKGNIRNW--------ELPSMSLR------ 704
             I + ++KP RSS+    L A++QR     +   ++          + P ++L       
Sbjct: 1183 GIDAQLIKPARSSVLLETLVATIQRHRHATDSHAVQPLAAERPDVPQPPPLALSEQRAQL 1242

Query: 705  ----------------HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL 748
                            H L    IL+ +DN VN  V    L   G     V  G+KA + 
Sbjct: 1243 QPPPVRPRLPATGGDGHRL---DILVAEDNEVNQMVFTQILGETGYGFEIVGNGRKALDA 1299

Query: 749  LMPPHQFDAC--FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVP 806
                 + + C   MD+ MPEM G EAT  IR++E                    +  HVP
Sbjct: 1300 F---GKLNPCMILMDVSMPEMSGLEATAAIRQLEQQ------------------TGTHVP 1338

Query: 807  ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            I+ +TA  ++   E CL +GMD Y+ KP     L  +V R+ 
Sbjct: 1339 IVGVTAHALKGDRERCLEAGMDDYLPKPISPRALLEKVERWL 1380


>gi|33415350|gb|AAQ18202.1| hypothetical protein csv012 [uncultured bacterium]
          Length = 1248

 Score =  253 bits (645), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 189/614 (30%), Positives = 293/614 (47%), Gaps = 95/614 (15%)

Query: 242  DYHGM-MELKKK---AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
            D HG  +EL++    AEAA  AKSQF+A +SHEIRTPMNG+LGM ++L+ T L+  Q+ +
Sbjct: 657  DEHGQALELQRARDLAEAASQAKSQFMANMSHEIRTPMNGILGMTELLLGTPLNDKQRRF 716

Query: 298  VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
             +    SG++L+ +IN++LD AK+E+G+LEL    F LR +++D L L + ++ +KG+EL
Sbjct: 717  AQAVYRSGESLLEIINDILDFAKIEAGRLELATCDFVLRTLVEDTLELMAPRAHEKGLEL 776

Query: 358  AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            +      +P  + GDP R RQI+TNL+ N+IKFTE G I V      ++  +I    EL 
Sbjct: 777  SFREQPGLPSVIHGDPLRLRQILTNLVANAIKFTEHGEIVV------DIRRAIGGAVELP 830

Query: 418  SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                             K  S + + L   V DTG GIP E   
Sbjct: 831  ---------------------------------KPGSLETMELEFMVRDTGIGIPAEVVP 857

Query: 478  RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
            R+F+ F+Q    ++R +GGTG+GL+ISK LV  M G+I   S P +GS F F      G+
Sbjct: 858  RLFSAFVQANGGMARRYGGTGLGLAISKQLVELMGGQIEVNSAPGVGSEFLFRVPVCIGT 917

Query: 538  STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
            + ++      M  +P+  S        LVVD       V    +   G+ V         
Sbjct: 918  TQAD----MAMLEEPDMPS-----FNVLVVDDNDTNRTVIENMLTAWGMHV--------- 959

Query: 598  LSQIASGSKIINMILVE-QEVWEKDTSVSTLFVNNLRKLGCGFQSKL--------FLLAN 648
              Q   G + +N+++    +    D ++  + + NL  +G     +          +L +
Sbjct: 960  -VQAIDGREALNVLMAHPSQDAPFDLALVDMNMPNLDGMGLAEAVRTSGRYPLLKMILLS 1018

Query: 649  SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL 708
            S+SS         V     + KPLR + L  ++   +G+  +      E   ++      
Sbjct: 1019 SVSSPDDVRRAQDVGFQRFVAKPLRKAELRQAI---LGISAERGDNAQEARRIN------ 1069

Query: 709  GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768
             + +L+++DN VN +V +  LKR G  V       +    L    +FD   MDIQMP MD
Sbjct: 1070 -KAVLVIEDNTVNQEVCSQMLKRLGCEVRVASSALEGLRRLG-EQRFDLILMDIQMPGMD 1127

Query: 769  GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
            G EA    R      NNR          +  ++    P++A+TA+ ++   E  L  G D
Sbjct: 1128 GVEALGWFR---RGSNNR----------FSFITPSDTPVIAVTANALEGDEERFLGLGFD 1174

Query: 829  GYVSKPFEAEQLYR 842
             Y+SKPF   QL++
Sbjct: 1175 DYLSKPFRQSQLHK 1188


>gi|428210022|ref|YP_007094375.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis
           PCC 7203]
 gi|428011943|gb|AFY90506.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis
           PCC 7203]
          Length = 1053

 Score =  253 bits (645), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 187/607 (30%), Positives = 294/607 (48%), Gaps = 71/607 (11%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +  AEAA+ AKS FLA +SHEIRTPMNGV+GM  +L++T L   QQD+V T + SG AL+
Sbjct: 322 RNTAEAANQAKSAFLANMSHEIRTPMNGVIGMTGLLLNTSLTPQQQDFVDTIRRSGDALL 381

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+ES KL+LE   F+LR  +++ L + + ++ DK +ELA  +  + P T+
Sbjct: 382 TIINDILDFSKIESDKLDLEEQPFDLRVCIENSLDVLAPQAADKNLELAYLLDPQTPATI 441

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GD  R  QI+ NL+ N++KFTE G + V+V              E++SS+  L G    
Sbjct: 442 MGDVTRLCQILVNLLSNAVKFTEHGEVVVSV-----------TTKEINSSE-YLEG---- 485

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                    +   Q   T+ +   +     +  +V+DTG GIP +   R+F  F QV  S
Sbjct: 486 ---------RKKEQLPQTADYLMPT--FYEIQFAVKDTGIGIPSDRMDRLFKSFSQVDTS 534

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R +GGTG+GL+IS+ L   M G +   S   +GSTF FT      +   +E       
Sbjct: 535 TTRQYGGTGLGLAISQRLSVMMGGRMWVESQVGVGSTFYFTIAVAAPNIVQHES------ 588

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
              + +  +  G + L+VD      K+     Q  G+     +   + L  +  G     
Sbjct: 589 ---SCILPQLHGKRLLIVDDSATNRKILMLQAQSWGMLPRAATSGAEALEWLQRGDPFDL 645

Query: 610 MILVEQEVWEKDTSVSTLF--VNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
            +L  Q       S++T     +N RKL         ++  S+      + +  V + + 
Sbjct: 646 AVLDMQMPQMDGLSLATTIHQHSNYRKLP-------LVILTSMGKPEVASQSTAVKLSAC 698

Query: 668 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----KILIVDDNNVNLK 723
           + KP++ S L   L + +   ++ +     LP  S     + +     IL+ +DN VN K
Sbjct: 699 LTKPVKQSQLYNVLLQILSEQSQPSQVAPFLPKSSTLSAQIAQTHPLNILLAEDNTVNQK 758

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           VA   L++ G        G +    L     +D   MD+QMPEMDG EA + I   +  F
Sbjct: 759 VALLMLQQMGYRADVANNGLEVLAALQ-RQPYDVVLMDVQMPEMDGLEAARQI--CQRWF 815

Query: 784 NNRIRRGEVSIEAYENVSNFHVP-ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                               H P I+AMTA+ +Q   E CL +GMD Y++KP + E L +
Sbjct: 816 PP------------------HKPRIVAMTANAMQGDREACLYAGMDDYLTKPVKIEHLAQ 857

Query: 843 EVSRFFP 849
            +S+  P
Sbjct: 858 ALSQCHP 864


>gi|374292899|ref|YP_005039934.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
 gi|357424838|emb|CBS87718.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
          Length = 1297

 Score =  253 bits (645), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 203/687 (29%), Positives = 308/687 (44%), Gaps = 115/687 (16%)

Query: 201  FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAK 260
            +  KA  P L   T+  +L    + G +     + IA+ +     M   +  AEAA  AK
Sbjct: 436  YWTKAGKPFLVEYTASPMLADGRVEGAVV--VFHEIAERKRAEAAMQRARLAAEAASRAK 493

Query: 261  SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 320
            S+FLA +SHEIRTPMN +LG++ +L  TEL   Q DYV   + S ++L+ ++N++LD +K
Sbjct: 494  SEFLANMSHEIRTPMNAILGLIHLLQQTELTDRQADYVHKVRVSAQSLLGILNDILDFSK 553

Query: 321  VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 380
            VE+GKLELE V+F L  +L  +  +    +Q+K +++   ++  VP  LIGDP R +QI+
Sbjct: 554  VEAGKLELEQVAFRLDDLLQTLAVIVGSAAQEKDIDVLFSVAPDVPLDLIGDPLRLQQIL 613

Query: 381  TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 440
             NL GN+IKFTE G + V V +                                      
Sbjct: 614  INLAGNAIKFTETGEVVVAVRV-------------------------------------- 635

Query: 441  FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 500
                      +S S D   L  +V DTG GI  E + R+F  F Q   S +R  GGTG+G
Sbjct: 636  ----------RSLSNDRAVLDFAVRDTGIGIAPEQRDRLFQAFSQGDSSTTRRFGGTGLG 685

Query: 501  LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ--PNSVSSE 558
            L+I   LV  MKG +   S P  GS F F A FG  + +              P  V  +
Sbjct: 686  LAICARLVRLMKGAMEVESEPGKGSVFRFHAEFGLHAGSGAGGGFAAGPAGRLPRQVPRD 745

Query: 559  FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKIINMILVEQ 615
               +  LVVD      +V        G  V   +D    +  L + A+     +++L++ 
Sbjct: 746  ---LTVLVVDDNATAREVLSEIAAAFGWAVTACADGQAAIDELERAAAAGNPYDVVLMDW 802

Query: 616  EVWEKD---------------TSVSTLFVNNLR-KLGCGFQ-------------SKLFLL 646
            ++   D               T +  +     R +LG  F+             +   L 
Sbjct: 803  KMPGMDGIEAARRIRVDARAGTPMIIVISGYGRDRLGARFEEAGAAGFLVKPVTASTLLD 862

Query: 647  ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL 706
            A +I+ +R     +GV +P+ I  P      A  + R    G           +      
Sbjct: 863  AVTIAYARTAPDGEGVRLPASIPDP------AYPMLRFEAGGGGRPDGGLSGAAWDASRA 916

Query: 707  LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ-FDACFMDIQMP 765
            L GR++L+ DDN ++ +VA   L+R GA V     G++A + +    Q FDA  +D+QMP
Sbjct: 917  LHGRRLLLADDNAISQQVAREILERAGAVVTVAATGRQAADCVRAADQPFDAVLLDVQMP 976

Query: 766  EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 825
            +MDGF AT  IR +    N                    +PI+AMTA  + A  + CL +
Sbjct: 977  DMDGFAATAAIRALPGGRN--------------------LPIIAMTASALPADRQRCLDN 1016

Query: 826  GMDGYVSKPFEAEQLYREVSRFF-PPI 851
            GMD +V KP +  QL+  ++R+  PP+
Sbjct: 1017 GMDAHVPKPLDLPQLFATLTRWIGPPL 1043


>gi|307132370|ref|YP_003884386.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Dickeya dadantii 3937]
 gi|306529899|gb|ADM99829.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Dickeya dadantii 3937]
          Length = 921

 Score =  253 bits (645), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 190/597 (31%), Positives = 285/597 (47%), Gaps = 98/597 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T+L  TQ+DY++T + S   L+
Sbjct: 280 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQLTSTQKDYLQTIERSANNLL 339

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F+L   LD+V+ L +  + +KG+EL + I   VPE  
Sbjct: 340 NIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQF 399

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +QIITNL+GN+IKFTE+G+I             I +E     S   L      
Sbjct: 400 VGDPLRLQQIITNLLGNAIKFTEQGNI------------DIRIEKRRQESLQVL------ 441

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                         L + ++DTG GI    Q+++F  F Q   S
Sbjct: 442 ------------------------------LEIQIKDTGIGIAEAQQTQLFQAFRQADTS 471

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN G+TF  T                Q+N
Sbjct: 472 ISRQHGGTGLGLVITQRLVREMGGDISFHSKPNQGTTFWCTVNL-------------QLN 518

Query: 550 N---QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
               +P+      QG     V+  P  A+ +   +    + V   S  L+ L +     +
Sbjct: 519 PHVLEPDYHFDRLQGKHLAYVEANPAAAQATLDILVHTPLTVS-YSPTLEQLPE-----R 572

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
             +++L+   +  ++T +   F   +R   C   S + L   S++   A        I +
Sbjct: 573 TFDILLIGVPIHYRNTLLD--FTPLIRDF-CRLASCVILALPSMAEMEAE-QLKSFGIHA 628

Query: 667 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
            + KP+ +  L A LQ         N      P+  L  L L   ++ VDDN  NLK+  
Sbjct: 629 SLSKPITAPRLLAMLQDNSLFSQDSNELALPPPATLLSRLPLS--VMAVDDNPANLKLIG 686

Query: 727 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
           A L+     ++  E G  A       H  D   MDIQMP MDG +A++ IR++       
Sbjct: 687 ALLEEQVENIILCESGADAIARAQGTH-LDIILMDIQMPGMDGLQASEHIRQLSQ----- 740

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
                          + H PI+A+TA  +    E  L+SGMD Y+SKP + EQ+ R+
Sbjct: 741 ---------------HTHTPIVAVTAHTMSGEREVLLQSGMDDYLSKPID-EQMLRQ 781


>gi|406880450|gb|EKD28803.1| hypothetical protein ACD_79C00201G0011, partial [uncultured
           bacterium]
          Length = 749

 Score =  253 bits (645), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 176/607 (28%), Positives = 299/607 (49%), Gaps = 99/607 (16%)

Query: 254 EAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLIN 313
           E A+  KS+FLA +SHEIRTPMNG++GM+ + +DT+L   Q D++ T + S  +L+ +IN
Sbjct: 217 ENANRVKSEFLANMSHEIRTPMNGIIGMITLALDTKLTDEQYDFLSTVKNSAYSLLGVIN 276

Query: 314 EVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP 373
           ++LD +K+E GK++++ + FNLR  ++ V+   + ++ +K +ELA   S  V   L+GD 
Sbjct: 277 DILDFSKMEVGKMQIDEIDFNLRNTIEGVVETVALQASEKKIELACMFSHEVAALLVGDA 336

Query: 374 GRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCH 433
            R RQI+ NL  N+IKFT KG + + V L+ E                            
Sbjct: 337 ARIRQILLNLASNAIKFTPKGEVVIRVELLSE---------------------------- 368

Query: 434 SWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 493
                               + D+ N++ SV DTG GI  +    +F  F QV  S +R 
Sbjct: 369 --------------------TNDMANILFSVTDTGIGISEDKLGILFNEFSQVDGSTTRI 408

Query: 494 HGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ-- 551
           +GGTG+GL+ISK LV  M GEIG  S P  GS F F                +Q+N    
Sbjct: 409 YGGTGLGLAISKKLVLMMNGEIGVESKPGHGSKFWFKLPL-----------KKQLNPLPF 457

Query: 552 PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL----GIQVEVVSDQLQCLSQIASG--- 604
           P   S + +GM+ L+ D      K +RY ++++    G++   V   +  +S++      
Sbjct: 458 PEKKSFDLKGMRLLITDDN----KTNRYILEKMLEHYGVRSVSVDSGVAAISELKKAIIE 513

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
           +    ++L++ ++   D   +T+ V N  ++    +  + ++  S+ +         +  
Sbjct: 514 NDPFKLMLLDMQMPGMDGKHTTVIVKNTPEI----KDTVIIILTSLGNRGDLADISKIGC 569

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKG--NIRNWELPSMSLRHLLLGR-KILIVDDNNVN 721
              ++KP++ S+L  ++   +   +    ++R   +   ++  L     +IL+ +DN++N
Sbjct: 570 AGYLIKPVKESLLMDTIGTVLSRNDTEYISVRRQIVTKHTVEDLKCQNIQILLAEDNSIN 629

Query: 722 LKVAAAGLKRYG-AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
            KVA   L++ G   V  VE G+ A E       +D   MDIQMPE+DG  AT  IR  E
Sbjct: 630 QKVAKNILQKSGFQQVDVVENGRLAVE-ASEKKVYDIILMDIQMPELDGISATNEIRLRE 688

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
            +                     H  I+AMTA  ++   E CL++GMD Y+SKP E +++
Sbjct: 689 KD------------------QGRHTTIIAMTAHALKGDSERCLQAGMDDYLSKPIEPQEM 730

Query: 841 YREVSRF 847
            ++++++
Sbjct: 731 LKKIAKW 737


>gi|90022133|ref|YP_527960.1| ribosomal-protein-alanine acetyltransferase [Saccharophagus
           degradans 2-40]
 gi|89951733|gb|ABD81748.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 1109

 Score =  253 bits (645), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 193/623 (30%), Positives = 311/623 (49%), Gaps = 102/623 (16%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           ++  K +AE++  AKS+FLA +SHEIRTPMNGVLGML +++++ L   Q+  +  AQ+SG
Sbjct: 405 LLAAKNEAESSSRAKSEFLACMSHEIRTPMNGVLGMLGLVLNSSLTPEQERKLLLAQSSG 464

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
           ++L+S+IN++LD +KVE+GKLELE + F+   +L DV+  F+  +Q+KG+EL +      
Sbjct: 465 QSLLSVINDILDYSKVEAGKLELEHLDFDPHRLLSDVVQSFNYSAQEKGIELVLDDIGLG 524

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            + L GDP R RQII NL+ N++KFT +G I V   L  E+           +  N L  
Sbjct: 525 GKVLRGDPSRLRQIINNLLSNALKFTSQGEIIVRAKLDSEI-----------NGLNQL-- 571

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                RC                              SV DTG GIP +  S +F  F Q
Sbjct: 572 -----RC------------------------------SVTDTGIGIPSDKISGLFDSFTQ 596

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
           V  S +R +GGTG+GLSI K L   M G+I  VS    G+ F F      GS        
Sbjct: 597 VDSSTTRRYGGTGLGLSICKMLTRIMGGDIFVVSEVGKGTRFDFVVHVETGSCLP----- 651

Query: 546 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS-G 604
                  ++  S+  G+  L+VD       V    +   GI V  V+   Q L  +A   
Sbjct: 652 ------VDNAESDVTGLNVLLVDDNLTNLDVISGQLISWGIHVTKVAGPEQALVLVAEVQ 705

Query: 605 SKIINMILVEQEVWEKDTSVSTL-FVNNLRKLGCGFQSKLFLLANSIS-SSRANTSTDGV 662
             + +++L++  +     +++ +     ++   C   + + +L++S   +SR +    GV
Sbjct: 706 DTVFDLVLMDCHM----PNINGIDLAERIQGSPCIKPNSVIILSSSADMASRFHMQEVGV 761

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM-----------SLRHLLLGR- 710
                +MKP+ +  L  ++Q  + +  K N + +  P++           +  +++ G  
Sbjct: 762 V--GCLMKPVSAPYLHQAIQYFIQI-KKSNKQQFITPALLESVHATTESTANPNIVWGDN 818

Query: 711 -KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH---QFDACFMDIQMPE 766
            +IL+V+DN VN +V A  L+ +G A   V+ G++A   L       ++   FMD QMP 
Sbjct: 819 VRILVVEDNLVNQQVIAGILEDFGLAFTLVDDGQQAISALKENTGDLRYHFVFMDCQMPV 878

Query: 767 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG 826
           +DG+ ATK IRE       +I                 VPI+A+TA+ +Q   ++CLR+G
Sbjct: 879 LDGYNATKQIREGAAGEECKI-----------------VPIVALTANAMQGDRDKCLRAG 921

Query: 827 MDGYVSKPFEAEQLYREVSRFFP 849
           M+ YV+KP +A+++   +  + P
Sbjct: 922 MNDYVAKPVDADEVRLALVSWLP 944


>gi|345877533|ref|ZP_08829277.1| glycine cleavage system transcriptional repressor [endosymbiont of
           Riftia pachyptila (vent Ph05)]
 gi|344225426|gb|EGV51785.1| glycine cleavage system transcriptional repressor [endosymbiont of
           Riftia pachyptila (vent Ph05)]
          Length = 952

 Score =  253 bits (645), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 186/634 (29%), Positives = 300/634 (47%), Gaps = 118/634 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K+ AE A++AK++FLAT+SHEIRTP+NG+L +L+ML +T+L   Q+ +V TA  S + L+
Sbjct: 248 KEAAETANMAKTEFLATMSHEIRTPLNGILPILEMLRETKLSAEQRQFVMTALNSTQLLL 307

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN++LD +KVE+GKLELE +  N+R +++ V SL +  +  +G++L   ++  VP + 
Sbjct: 308 SIINDILDFSKVEAGKLELEFIELNVRELVEQVTSLMTNAADRRGLKLKHKVAPEVPRSA 367

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R RQI+TNL+ N++KFTEKG I V + L                           
Sbjct: 368 RGDPIRLRQILTNLVSNAVKFTEKGGISVEISL--------------------------- 400

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                + +S   + L+ +V DTG G+  +  +R+F PF Q   S
Sbjct: 401 ---------------------RHASRTEVELLFAVRDTGIGMSEKHVNRLFRPFSQADAS 439

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R HGGTG+GL+I K L   M G IG  S+   GS F F                + + 
Sbjct: 440 TTRKHGGTGLGLAICKRLTELMGGRIGVKSVRGKGSLFWFVVPL-----------RKSLE 488

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             P S   + QG++AL++           +H+   G+ VE   D    L+++ + + +  
Sbjct: 489 EVP-SARRDLQGVRALILGGDAEETDQIAHHMLDWGMVVEQSGDHYDALNKLKASATLGE 547

Query: 610 MILVEQEVWEKDTSVSTL--FVNNLRKLG--CGFQSKLFLLANSISSSRANTSTDGVSIP 665
             + E  V +    V  +   + ++R L    G +   FL+ +   +        GV   
Sbjct: 548 SWMYELVVIDVRGLVPNVIQLIEDIRALPHMSGVE---FLILSGDGAEVKKLKKMGV--- 601

Query: 666 SVIMKPLRSSMLAASLQRAM----GVGNKGNIRNWELPSM-------------------- 701
            V++ P R   +   ++R      G G   ++ +  +P M                    
Sbjct: 602 DVLLAPFRRIEIERRVKRIFDVQEGYGGSHSLPDDLIPRMPDETFTWDDNQAAKNILSRN 661

Query: 702 ------SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF 755
                 +++H  L   +L+V+DN VN+ V    L+R G   V    G +A +++     F
Sbjct: 662 KDGEKQTVQHTPLVGHVLVVEDNPVNMAVVKKMLQRAGLTPVTAMDGAEALKMV-GEENF 720

Query: 756 DACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815
           D   MD QMP MDG+E+T+ IR  E    N + R               +PI+AMTA+ +
Sbjct: 721 DVVLMDCQMPRMDGYESTEAIRNREE--MNGLSR---------------LPIIAMTANAM 763

Query: 816 QATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
               E CL +GMD Y++KP +   L   + ++ P
Sbjct: 764 AGDRERCLAAGMDDYLAKPVKPSALENMLRQWLP 797


>gi|317052256|ref|YP_004113372.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316947340|gb|ADU66816.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 1253

 Score =  253 bits (645), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 217/693 (31%), Positives = 324/693 (46%), Gaps = 108/693 (15%)

Query: 180  LWLVSTLNFGDPFRKHEMRCRFKQ-KAPWPLLAISTSIGILVIASLVGHIFQATVNRIAK 238
            +W  S ++ G  +R  EM  R K  ++ W      TS+ +  I    GH     V     
Sbjct: 502  IW--SVISAGQTWRG-EMESRKKNGESYW------TSMSVTPIKDTHGH-----VTHYVT 547

Query: 239  VEEDY-------HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 291
            VEED          + E K  AE A  AKS FLA +SHEIRTPMNG+LGM ++ + TEL 
Sbjct: 548  VEEDMTERKAMEDALREAKNVAEEASRAKSIFLANMSHEIRTPMNGILGMTELALQTELS 607

Query: 292  VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 351
             TQ+ Y+  A  S K+L+ +IN+VLD +KVE+G++ LE  SF+    +++V+   +  + 
Sbjct: 608  TTQRRYLTIAHNSAKSLLVIINDVLDFSKVEAGEIRLEQTSFDPVETVENVMQSIAYSAY 667

Query: 352  DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 411
             KG+EL  +I  R+   L+GDP R +QI+ NL+GN++KFT+ GH+ + V          E
Sbjct: 668  SKGIELMNHIDHRLSHYLVGDPTRLQQILNNLLGNAVKFTDTGHVLLDV----------E 717

Query: 412  VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 471
            V+ E  S                                        +L   V DTG GI
Sbjct: 718  VQGESDSEA--------------------------------------HLHFRVIDTGIGI 739

Query: 472  PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 531
            P      IF  F QV  S  R  GGTG+GL+I++ LV  M G I   S    GSTF F  
Sbjct: 740  PANKIDSIFESFSQVEASDRRKFGGTGLGLAITRKLVHLMNGRIWVESHMGEGSTFHFVI 799

Query: 532  VFGNGSSTSNEHNSQQMNNQPNSVSSEFQG-MKALVVDPRPIRAKVSRYHIQR--LGIQV 588
             F  G          ++ + P  +S+E     + LV D   I  ++    ++R  LG+ V
Sbjct: 800  PFRKGD---------RLPDIPFDISAEQAARTRILVADDSEINRRILVEILERRQLGV-V 849

Query: 589  EVV--SDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC--------G 638
            E +   D  Q L Q     +  +M++++             F+  +R +          G
Sbjct: 850  EAIDGDDARQKLQQAMDEGRPFDMLILDH------------FMPGIRGVDLARELHQHKG 897

Query: 639  FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 698
             ++   LL  S   S      D   +   + KP+R   L  ++   +    K   R+   
Sbjct: 898  HRNLPILLLPSSMDSDDLVRMDNCGMCFHLPKPIRYRQLLQAVNTCLDKQGKPGRRSAAS 957

Query: 699  PSMSLR-HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 757
             S +L   LLL   +L+V+DN +N ++A   L++ G  VV  E G +     M   +FD 
Sbjct: 958  ASRALDGQLLLPLNLLVVEDNPINRELAVTILRQQGHRVVEAENGSEGLR-RMTQEKFDL 1016

Query: 758  CFMDIQMPEMDGFEATKIIREMEHNFNNRIRR-GEVSIEAYENVSNFHVPILAMTADVIQ 816
             FMDIQMP MDG  A KI+R  E      +   G+VS+     V+  + P++A+TA  I 
Sbjct: 1017 VFMDIQMPVMDGLTAVKILRSCEKGIGMPVEEYGDVSVPLCSAVAGTYTPVIALTAHAIT 1076

Query: 817  ATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
               E+ L +GMD Y++KPF+A ++   + RF P
Sbjct: 1077 GEREKGLAAGMDEYLTKPFQAREIVDILWRFAP 1109


>gi|192361523|ref|YP_001983038.1| GacS [Cellvibrio japonicus Ueda107]
 gi|190687688|gb|ACE85366.1| GacS [Cellvibrio japonicus Ueda107]
          Length = 974

 Score =  253 bits (645), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 188/603 (31%), Positives = 285/603 (47%), Gaps = 93/603 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +K+A  A   KS+FLA  SHEIRTP+NG+LG +++ + TEL+  Q++Y+ T + S + L+
Sbjct: 303 RKEALEASRVKSEFLANTSHEIRTPLNGILGFINLALKTELNEKQREYMETIRDSAQNLL 362

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN +LD +K+ESGKL L+     +R  +D+VL + +  + +K ++L  YI   +P  L
Sbjct: 363 TVINGILDFSKIESGKLTLDYAPLPIRKTVDEVLHMLAPDAHEKNLQLITYIEPCIPRNL 422

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GD  RF+Q+++NL+ N+IK+++ G+I V + + +        ET+              
Sbjct: 423 LGDALRFKQVLSNLVTNAIKYSDAGNIIVDISIAQ------RQETQ-------------- 462

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                       I L V+V D G G+  E Q  +F+ F QV  S
Sbjct: 463 ----------------------------ITLKVAVTDQGIGLSQEEQENLFSAFSQVDSS 494

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            SR H GTG+GL+I K LV RM GEIG VS P  GSTF FTA  G          SQ  N
Sbjct: 495 SSREHDGTGLGLAICKGLVERMHGEIGVVSAPEQGSTFWFTARLGIDKRQPAP--SQLAN 552

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
                +    +   +L    + +R   +  HI      +  V D    L +  +  K  +
Sbjct: 553 LSDYRILLCGENADSLKQLEKLLREWHANTHI------ISAVHDCFPILREARAQDKPFD 606

Query: 610 MILVEQEVWEKDTSVSTLFVNNL-RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 668
           ++++  ++   +  +  L +NNL  +L   F   L             T  +  SI   I
Sbjct: 607 LLVL--DIAPNERKIPPLLLNNLAEQLESEFNCTLVACCTPAHQRLFRTHAEQSSI-LFI 663

Query: 669 MKPLRSSMLAASLQRAMGVGNKGN----IRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            KP+    L  +L R + +  K N      + + PS          ++L+VDDN  NL++
Sbjct: 664 NKPIAYDALLQTLGRQLDIHIKENRDQDQEDAQRPSA---------RVLLVDDNPANLQL 714

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
           A+  L+     V+    G  A E      +FD  FMDIQMP MDG EAT+ IR ME    
Sbjct: 715 ASELLRGLNTEVITANNGPLAIEACQ-TDEFDVIFMDIQMPGMDGIEATRRIRSMESGK- 772

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
              RR                PI+A+TA  I     E L +GMD  +SKP    QL   +
Sbjct: 773 ---RR---------------TPIIALTAHTITEQKSELLIAGMDDCISKPVNETQLAHII 814

Query: 845 SRF 847
           +R+
Sbjct: 815 NRW 817


>gi|334704936|ref|ZP_08520802.1| two-component system sensor protein [Aeromonas caviae Ae398]
          Length = 940

 Score =  253 bits (645), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 207/684 (30%), Positives = 312/684 (45%), Gaps = 95/684 (13%)

Query: 172 GSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWP---LLAISTSIGILVIASLVGHI 228
           G   S DGLW  +TL    P + H+ +  +K  +  P   L AI T I  +++A+    +
Sbjct: 259 GQMESADGLWSWTTLY---PAQNHD-QLIWKAASLVPHSELQAIRTHIWGIILAASAVLL 314

Query: 229 FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT 288
                   A V   +   +  ++ A  A V K  F+A +SHEIRTPMN ++G+  +L   
Sbjct: 315 LLFGAGVAALVRSRHKEQLAQQEAARLAQV-KGDFIANMSHEIRTPMNAIMGLTYLLEQG 373

Query: 289 ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 348
            LD  Q   VR    +G+AL+ +IN++LD +K+ESG+LELE V F+L  +LD V ++ S 
Sbjct: 374 GLDDGQHALVRKIHQAGQALLGIINDILDFSKIESGRLELERVPFSLEEVLDHVAAIMST 433

Query: 349 KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 408
               K +EL V  +      LIGD  R  Q++ NL GN+IKFTE+G + V V L  E   
Sbjct: 434 CVGQKHLELVVSSAPEPVSHLIGDALRLEQVLLNLTGNAIKFTERGEVEVKVVLEAE--- 490

Query: 409 SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 468
                                             QDG           +  L+  V DTG
Sbjct: 491 ----------------------------------QDG-----------MATLLFRVRDTG 505

Query: 469 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 528
            GIP E Q+ IF  F Q   S SR  GGTG+GL+IS+ LV  M G+IG  S    GS F 
Sbjct: 506 IGIPPEQQANIFNAFSQADSSTSRRFGGTGLGLTISRRLVNLMGGDIGVTSELGKGSEFW 565

Query: 529 FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 588
           F                 +   +P +++   Q +  L+ D   +        +  LG Q 
Sbjct: 566 FRVRL-------------EQVERPEALNERLQHISLLIADDNQVTRDALSMTVGSLGWQS 612

Query: 589 EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 648
            VV    Q L  +    +  ++IL++  +   D   + L +   R      +S + ++A 
Sbjct: 613 RVVESGEQALHHLLRQGERFDVILLDWIMPGMDGLETCLAIR--RAFEQQERSPIIIMAT 670

Query: 649 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL 708
           S S            +  V+ KP+  S L  ++ R +    + ++   E     LR  L 
Sbjct: 671 SYSQDELMHRPGSDQVDLVLHKPVTGSSLYNAVARLIH-EKREHVDPLESGQRRLR--LP 727

Query: 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM-PPHQFDACFMDIQMPEM 767
           G  IL+VDD+++NL+VA   L+R GA V+    G++A   L  P  + D   MD+QMP M
Sbjct: 728 GVHILLVDDSDINLEVATRLLQREGAEVITAIDGERALACLADPARRIDLVLMDVQMPVM 787

Query: 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
           DG+EAT+ +R +                          P+LA+TA V +   E  L SGM
Sbjct: 788 DGYEATRRLRLLP--------------------GREETPVLALTAGVFKDQREAALASGM 827

Query: 828 DGYVSKPFEAEQLYREVSRFFPPI 851
           + +++KP + EQL   + R+ P +
Sbjct: 828 NDFIAKPLDVEQLIATLLRYLPDV 851


>gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 1499

 Score =  252 bits (644), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 189/619 (30%), Positives = 294/619 (47%), Gaps = 108/619 (17%)

Query: 236 IAKVEEDYHGMM--------ELKKKAEAADVA---KSQFLATVSHEIRTPMNGVLGMLDM 284
           I  +E  ++ MM        ELK+  +AA  +   K +F A VSHE+RTP+NGVLGML++
Sbjct: 238 IMDMESAFNTMMTVLEAREQELKRARDAALESARIKGEFAANVSHELRTPLNGVLGMLEL 297

Query: 285 LMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLS 344
           L +  L   Q++YV+ A  SG+ L+ LI  +LD +++ESG+ +L+   F L+ ILDD + 
Sbjct: 298 LRNMGLTPKQREYVQVACNSGETLLELIGNILDFSRIESGRFKLDPADFYLQEILDDAIG 357

Query: 345 LFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 404
           L +G++Q K ++L   ++  VP +L GD  R RQI+ NLMGN++KFTE+G + V V L+E
Sbjct: 358 LLAGQAQRKDLDLGYVVAKNVPPSLRGDATRIRQILINLMGNAVKFTEQGEVSVEVQLLE 417

Query: 405 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSV 464
           +                                                +A  + L+  V
Sbjct: 418 K------------------------------------------------TAKKLVLLFEV 429

Query: 465 EDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 524
           +DTG GIP+E Q  IF  F Q   S +R +GGTG+GL+I + LV  M G+IG  S    G
Sbjct: 430 KDTGIGIPIEFQKHIFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVESKFGGG 489

Query: 525 STFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL 584
           S F FT       +     +  + N           G++ L+VD   +  +         
Sbjct: 490 SRFWFTVPLEEAVALQERRDLNRAN---------VAGLRLLIVDDSTVSRRFLEQTFSFW 540

Query: 585 GIQVEVVSDQLQCLSQIASGS---KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641
           G+      +  Q L  + S +   +  ++ L+++ +   +       V+ + ++    +S
Sbjct: 541 GMYHGSAENGQQALKMLRSAAIQGRAYDLALIDENMPGMEG------VDLVHRIA---ES 591

Query: 642 KLFLLANSISSSRANTSTDGVS-IPSV---IMKPLRSSMLAASLQRAMGVGNKGNIRNWE 697
                   I   R +  T  VS +P V   I KP++ S L  ++   +    KG     E
Sbjct: 592 PQISSVKIILMGRQHQPTVDVSHLPGVVNYIAKPVQQSPLYNAIVTTVKQSGKGQP---E 648

Query: 698 LPSMSLRH-LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 756
           LP  ++       R IL+V+DN VN +VA   LKR+G  V     G++A +L+     +D
Sbjct: 649 LPLAAMEEPSFANRYILVVEDNRVNQQVAVGMLKRFGCHVEVAANGQEALDLV-ARKSYD 707

Query: 757 ACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 816
              MD  MP MDG+EAT+ IR +E                        VPI+AMTA+V +
Sbjct: 708 LVLMDCHMPRMDGYEATRRIRSLE-------------------AGKVQVPIIAMTANVRE 748

Query: 817 ATYEECLRSGMDGYVSKPF 835
              ++CL  GM+ Y+ KP 
Sbjct: 749 GDSDKCLSVGMNDYLPKPL 767



 Score = 42.0 bits (97), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 27/141 (19%)

Query: 711  KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL---MPPHQFDACFMDIQMPEM 767
            ++LIVDD+          L+  G  +     G++A       MP    D   MD  MP +
Sbjct: 926  RVLIVDDDRAMRMALRNVLEEGGYRIEEAVNGEQALAFCRRQMP----DLVLMDAVMPLL 981

Query: 768  DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
            DGF+A   IR+M                      + H P+L +TA   + + E+   +G 
Sbjct: 982  DGFKACTQIRDMP--------------------GSRHTPVLIITALDDEHSIEQAFSAGA 1021

Query: 828  DGYVSKPFEAEQLYREVSRFF 848
              Y+ KP     L + V+R  
Sbjct: 1022 TDYIPKPLHFGVLRQRVARLL 1042


>gi|345865150|ref|ZP_08817341.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent
           Tica)]
 gi|345123737|gb|EGW53626.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent
           Tica)]
          Length = 938

 Score =  252 bits (644), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 186/634 (29%), Positives = 300/634 (47%), Gaps = 118/634 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K+ AE A++AK++FLAT+SHEIRTP+NG+L +L+ML +T+L   Q+ +V TA  S + L+
Sbjct: 234 KEAAETANMAKTEFLATMSHEIRTPLNGILPILEMLRETKLSAEQRQFVMTALNSTQLLL 293

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN++LD +KVE+GKLELE +  N+R +++ V SL +  +  +G++L   ++  VP + 
Sbjct: 294 SIINDILDFSKVEAGKLELEFIELNVRELVEQVTSLMTNAADRRGLKLKHKVAPEVPRSA 353

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R RQI+TNL+ N++KFTEKG I V + L                           
Sbjct: 354 RGDPIRLRQILTNLVSNAVKFTEKGGISVEISL--------------------------- 386

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                + +S   + L+ +V DTG G+  +  +R+F PF Q   S
Sbjct: 387 ---------------------RHASRTEVELLFAVRDTGIGMSEKHVNRLFRPFSQADAS 425

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R HGGTG+GL+I K L   M G IG  S+   GS F F                + + 
Sbjct: 426 TTRKHGGTGLGLAICKRLTELMGGRIGVKSVRGKGSLFWFVVPL-----------RKSLE 474

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             P S   + QG++AL++           +H+   G+ VE   D    L+++ + + +  
Sbjct: 475 EVP-SARRDLQGVRALILGGDAEETDQIAHHMLDWGMVVEQSGDHYDALNKLKASATLGE 533

Query: 610 MILVEQEVWEKDTSVSTL--FVNNLRKLG--CGFQSKLFLLANSISSSRANTSTDGVSIP 665
             + E  V +    V  +   + ++R L    G +   FL+ +   +        GV   
Sbjct: 534 SWMYELVVIDVRGLVPNVIQLIEDIRALPHMSGVE---FLILSGDGAEVKKLKKMGV--- 587

Query: 666 SVIMKPLRSSMLAASLQRAM----GVGNKGNIRNWELPSM-------------------- 701
            V++ P R   +   ++R      G G   ++ +  +P M                    
Sbjct: 588 DVLLAPFRRIEIERRVKRIFDVQEGYGGSHSLPDDLIPRMPDETFTWDDNQAAKNILSRN 647

Query: 702 ------SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF 755
                 +++H  L   +L+V+DN VN+ V    L+R G   V    G +A +++     F
Sbjct: 648 KDGEKQTVQHTPLVGHVLVVEDNPVNMAVVKKMLQRAGLTPVTAMDGAEALKMV-GEENF 706

Query: 756 DACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815
           D   MD QMP MDG+E+T+ IR  E    N + R               +PI+AMTA+ +
Sbjct: 707 DVVLMDCQMPRMDGYESTEAIRNREE--MNGLSR---------------LPIIAMTANAM 749

Query: 816 QATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
               E CL +GMD Y++KP +   L   + ++ P
Sbjct: 750 AGDRERCLAAGMDDYLAKPVKPSALENMLRQWLP 783


>gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
 gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
          Length = 1259

 Score =  252 bits (644), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 185/596 (31%), Positives = 292/596 (48%), Gaps = 105/596 (17%)

Query: 261  SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 320
            S FLA++SHEIRTP+NGV+G LD+L  T+LD  Q  +V  A++S  +L+ LIN++LD +K
Sbjct: 595  STFLASMSHEIRTPLNGVIGFLDLLHTTKLDDQQGRFVELAKSSASSLLHLINDILDLSK 654

Query: 321  VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 380
            +E+G +ELE   F L  +++ V  +F+ + +  G+EL   ++  VP+  IGD  R RQ++
Sbjct: 655  IEAGGIELEQTEFVLTDLIESVPEMFAPQCRMTGLELNSSVATDVPQAAIGDCERIRQVL 714

Query: 381  TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 440
             NL  N++KFTE G +++ V          E E  ++SS + ++                
Sbjct: 715  VNLFANAVKFTETGGVYLRV----------ERERSVASSHDAIA---------------- 748

Query: 441  FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 500
                               +  SVEDTG G+P     R+F  F QV  S +R++GGTG+G
Sbjct: 749  ------------------RIRFSVEDTGIGVPRSKMQRLFKAFSQVDASTTRSYGGTGLG 790

Query: 501  LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 560
            L+I K LV  M GEIG  S    GSTF FT               Q +     ++    Q
Sbjct: 791  LAICKQLVELMGGEIGVESEVGKGSTFWFTLPL------------QAIERSTCNLIPNIQ 838

Query: 561  GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK---IINMILVEQEV 617
            G++ L VD   +  +V +  +Q  G++V    +  + L+ +   +K      + +++  +
Sbjct: 839  GLRVLAVDDNHMNLQVIKEQLQSWGVEVSTAGNGRRALALLEDAAKRNVPYQLAILDHLM 898

Query: 618  WEKDTSVSTLFVNNLRKLGCGFQSKLFLLA---NSISSSRANTSTDGVSIPSVIMKPLRS 674
             E D       +N+ + L    +++L +L    ++I  +      + V +P    KP+R 
Sbjct: 899  PELDGLRLAHLINDHQML---HETRLLMLTSYEHTIPHAELK-KLEMVCLP----KPVRQ 950

Query: 675  SMLAASL----------QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + L  +L          Q+   V N+  +R         R  L G  IL+VDDN +N  V
Sbjct: 951  TRLLDALVALTGERSPKQKVEKVENQQPVRE--------RAPLEG-AILVVDDNEINRIV 1001

Query: 725  AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
            A   L+  G  V   E G++A E +    QFD   MD +MPEMDGF AT++IR +  N  
Sbjct: 1002 AKEILQSEGFQVSLAENGRQAVEKIQSG-QFDLVLMDCEMPEMDGFAATRMIRNLAEN-- 1058

Query: 785  NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                        +  ++N  +PI+A+TA  +    E CL +GM+GYV KP    +L
Sbjct: 1059 -----------GHPELAN--LPIVALTAQAVLGDKERCLAAGMNGYVMKPVNRSEL 1101


>gi|410664899|ref|YP_006917270.1| response regulator receiver domain-containing protein [Simiduia
           agarivorans SA1 = DSM 21679]
 gi|409027256|gb|AFU99540.1| response regulator receiver domain-containing protein [Simiduia
           agarivorans SA1 = DSM 21679]
          Length = 872

 Score =  251 bits (642), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 185/634 (29%), Positives = 299/634 (47%), Gaps = 93/634 (14%)

Query: 231 ATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL 290
           A ++R   V+E+   +   K  A++A  AKS+FL  +SHEIRTPMN ++GM  +L DT L
Sbjct: 323 ADISRFKAVQEE---LTVAKSLADSASQAKSEFLTRMSHEIRTPMNAIIGMGHLLSDTRL 379

Query: 291 DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKS 350
             TQ+DY+     +  +L+ +INE+LD AK+E+G + LE   F+L   L  ++   +  +
Sbjct: 380 SRTQKDYLSNIDQAANSLLGIINEILDFAKIEAGTIVLEHNHFDLSDALAKLVRKAAPAA 439

Query: 351 QDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 410
           + K +E+ V+++  VP  L GD  R RQ + NL+ N+IKFT KG I + V + E      
Sbjct: 440 ERKNLEVLVHMAPEVPHYLRGDSLRLRQALFNLLDNAIKFTHKGEIQINVSVHE------ 493

Query: 411 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
                                                     ++   + L   V D G G
Sbjct: 494 ------------------------------------------TNTHYVALKFDVCDRGIG 511

Query: 471 IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
           +  E  + +FTPFMQ   S  R  GGTG+GL++SK+L+  M GEI   S P  GS F+FT
Sbjct: 512 MTREQLAELFTPFMQADGSTRRRFGGTGLGLTVSKHLIELMHGEISVNSSPGQGSQFSFT 571

Query: 531 AVFGNGSSTSNEHNSQQMNNQP-NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 589
           A FG+            +   P    S +F+ +K LVVD      ++       L + V 
Sbjct: 572 ARFGHSV----------IGALPVRDKSQKFRHLKTLVVDDNKAARQILTNLATHLDLHVT 621

Query: 590 VVSDQLQCLS--QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLA 647
            V+   +  S  ++A   +  +++L++ ++ E D   ++  +     L    Q    +L 
Sbjct: 622 SVASAAEAFSAIELADRDQPFDLVLMDYQMPEIDGLSASRTIKEKLSLS---QIPAIILV 678

Query: 648 NSISSSRA---NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR 704
           ++           S   + + S I KP+  S L  ++    G     +  + +LP+  L 
Sbjct: 679 SAFHRDEVLGDKQSQTDIPVESFISKPISQSHLFDAIAEVFGDSVFRSDAD-QLPAEQLA 737

Query: 705 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDI 762
             L G ++L+ +DN VN KVA   L +   AV     G++A +LL     + + A  MD+
Sbjct: 738 KTLKGVRVLLAEDNVVNQKVAVGILNKMDVAVDIANNGQEAIDLLNSHACNYYGAVLMDM 797

Query: 763 QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 822
           +MPE+DG++AT+ +R   H  +                    +PI+AMTA  ++   E C
Sbjct: 798 EMPEVDGYDATRRMRAGNHCKD--------------------IPIIAMTAHAMRGDKERC 837

Query: 823 LRSGMDGYVSKPFEAEQLYREVSRFFPPIPDRSP 856
           L +GMD Y++KP + E LY+ ++ F        P
Sbjct: 838 LAAGMDAYITKPVKPELLYQTLASFIAKSKQTQP 871


>gi|392542571|ref|ZP_10289708.1| sensor protein [Pseudoalteromonas piscicida JCM 20779]
          Length = 1103

 Score =  251 bits (642), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 203/623 (32%), Positives = 296/623 (47%), Gaps = 127/623 (20%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K+ AE    AKS+FLA++SHEIRTPMNGV+GML +L D  L  TQ   V  A  S K+L+
Sbjct: 553  KQAAEQGAQAKSEFLASMSHEIRTPMNGVIGMLSLLEDEHLTQTQLHKVSLAMGSAKSLL 612

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +LIN++LD +K+E+GKLELE++ F++RA+L +++   + ++Q KG+EL + ++      +
Sbjct: 613  NLINDILDFSKIEAGKLELESLDFDVRALLGELVESVALQAQKKGLELILDVTQLEKPLV 672

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GDP R RQIITNL+ N+IKFTE+G I +  +         EV+ +L             
Sbjct: 673  QGDPSRIRQIITNLISNAIKFTEQGEIIIRAWFS-------EVDNKL------------- 712

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
             R H                             SVEDTG GIP +   R+F  F QV  S
Sbjct: 713  -RFH----------------------------CSVEDTGIGIPEDKADRLFAKFSQVDAS 743

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF--TAVFGNGSSTSNEHNSQQ 547
             +R +GGTG+GL+I + L   M G+I   S    GS F F  T + GN            
Sbjct: 744  TTRKYGGTGLGLAIVRQLCELMDGDITVSSRFGHGSQFEFFVTLIHGN------------ 791

Query: 548  MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 607
             N Q  +   + QG+K L+VD            ++  G  V   S  +Q LS        
Sbjct: 792  -NTQFEAAKIDLQGIKILLVDDNLSALTSLESQLRHWGANVYKASSGIQALS-------- 842

Query: 608  INMILVEQEVWEKDTSVSTLFVNNL-------RKLGCGFQS-KLFLLANSISSSRANTST 659
                L E E +++D +V  + + ++        +LG   ++ K F     I  ++  T  
Sbjct: 843  ----LCEAE-YQRDKNVFDIALLDMTLRGMSGEQLGAALKNDKRFKAIKLIMMTQMGTKG 897

Query: 660  DGV-----SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK--- 711
            DG             KP+ +  L  +L     +   G       P ++  +L L RK   
Sbjct: 898  DGQFYAERGYSGYFPKPVTTKDLFDALTI---LAEDGKALANAKPLVTSHYLKLVRKATE 954

Query: 712  ----------ILIVDDNNVNLKVAAAGLKRYGAAVVCV-ERGKKATELLMPPH---QFDA 757
                      IL+V+DN VN  VA + LK+ G   + V E G  A ELL       QF+ 
Sbjct: 955  TEFTWPKPCRILLVEDNKVNQVVALSMLKKLGITHIEVAENGLLAIELLKSHQDECQFEL 1014

Query: 758  CFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQA 817
              MD QMPEMDG+  T++IR+              + E+Y+      V ILAMTA+ +  
Sbjct: 1015 ILMDCQMPEMDGYRTTELIRD------------GAAGESYQG-----VKILAMTANAMSG 1057

Query: 818  TYEECLRSGMDGYVSKPFEAEQL 840
              E+CL +GM+ Y++KP   E L
Sbjct: 1058 DREKCLNAGMNDYLTKPISEEPL 1080


>gi|358637994|dbj|BAL25291.1| hypothetical protein AZKH_2992 [Azoarcus sp. KH32C]
          Length = 744

 Score =  251 bits (642), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 184/607 (30%), Positives = 302/607 (49%), Gaps = 90/607 (14%)

Query: 245 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            ++  K++AE+A+ A+  FLA +SHEIRTPMN +LGM ++ +D  ++   + Y+ T ++S
Sbjct: 189 ALVRAKEQAESANRARGFFLANMSHEIRTPMNAILGMTELALDATVEAEPRSYLTTVKSS 248

Query: 305 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
            ++L+++IN+VLD +K+E+GK+ELE+V  ++R IL+DV+  F+  +  KG+E+ + ++  
Sbjct: 249 AESLLNIINDVLDLSKIEAGKVELESVPMSVRTILNDVVRAFAVSAHGKGLEIMLDVAPE 308

Query: 365 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
           +P+ L GDP R RQI+ NL+GN+IKFTE+G + V  +++                +  +S
Sbjct: 309 MPDRLFGDPTRLRQILANLIGNAIKFTERGEVLVKAWVLR---------------RAGMS 353

Query: 425 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
            Y                                 L  +V DTG GI  +   +IF  F 
Sbjct: 354 LY---------------------------------LQFAVCDTGIGIAADHHEQIFDAFT 380

Query: 485 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
           Q   S +R  GGTG+GL+IS  LV  + G+I   S P  G++F FT  F      + +  
Sbjct: 381 QADVSTARRFGGTGLGLAISNQLVKLLDGQIWLESEPGKGTSFYFTVRF------AADQT 434

Query: 545 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
           S  +   P ++    QG + LVVD     A +    +QRLG  VE+  D +Q    + S 
Sbjct: 435 SSSIPVAPVALPL-LQGRRVLVVDDCVHAADLLGKLLQRLGAHVEIACDPIQA-EVMRSA 492

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
               ++++V       D  +S      L       ++ + LLA          S +  ++
Sbjct: 493 RDPFDILVV-------DAGMSPPAGFALMDAPGRGEAIIVLLAQHGQQQTLQQSRNS-AV 544

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR-----------KIL 713
            + ++KP+  + L  +++ A+GV  +  +R+ EL +  L  + L              +L
Sbjct: 545 KARLVKPVFDAELLDAVRAALGV--QSVVRD-ELDAFRLDDVRLDDVRFQNDDGEPLNVL 601

Query: 714 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
           +V+D  VN  +A   L + G  V     G++A E      +FD   MD+QMP +DG EAT
Sbjct: 602 LVEDTPVNQTLAVKLLAKAGHRVTVAANGREALERF-DRQRFDLILMDVQMPVLDGMEAT 660

Query: 774 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
             IR  E N +        ++  ++ VS     I AMTA  ++   E CL +GMD Y+SK
Sbjct: 661 TAIRAREMNRS-------WAMGQHQRVSY----IAAMTAHAMEGDRERCLAAGMDDYLSK 709

Query: 834 PFEAEQL 840
           P   + L
Sbjct: 710 PIRRKAL 716


>gi|303246259|ref|ZP_07332539.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492322|gb|EFL52194.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 992

 Score =  251 bits (642), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 180/619 (29%), Positives = 297/619 (47%), Gaps = 86/619 (13%)

Query: 237 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 296
           AK+ +     + L + A+AAD AKS+FLA +SHEIRTP+N V+GM  +L+ T L   Q+D
Sbjct: 236 AKLRDSLDESIRLAELAKAADKAKSEFLARMSHEIRTPLNAVIGMSHLLLKTRLTPKQED 295

Query: 297 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 356
           Y+   ++S   L+ +IN++LD +K+E+G L +E + F+L  +L DV+++ S  + +K +E
Sbjct: 296 YLAKIRSSADTLLRVINDILDFSKIEAGGLTIERIPFDLETVLGDVVNIMSLGAAEKQLE 355

Query: 357 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 416
             + + D VP  L+GDP R  Q++ NL+GN++KFTE G +             +EV  + 
Sbjct: 356 FLLSVEDDVPFGLVGDPLRLGQVLLNLVGNAVKFTESGEVL------------LEVRRQP 403

Query: 417 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476
           S+S+N                                      L  +V DTG G+  E Q
Sbjct: 404 STSQNA------------------------------------RLRFAVRDTGVGLTAEQQ 427

Query: 477 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536
             +F PF Q   SISR +GGTG+GLSIS+ LV  M G++   S+P  GS F F       
Sbjct: 428 EGLFRPFSQADESISRRYGGTGLGLSISQRLVALMGGDLEVRSVPGEGSEFFF------- 480

Query: 537 SSTSNEHNSQQMNNQP-NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 595
              S +    ++  +P  S ++   GM  +VVD  P   ++    ++ +   V   +   
Sbjct: 481 ---SLDLPLSEVRAKPFQSDAAALAGMGIMVVDDNPTSLRILADMLRSMRFSVTTATGGE 537

Query: 596 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL-ANSISSSR 654
           + L  +      + ++L++   W+            +R L       + ++ A      R
Sbjct: 538 EALRLLEGAESDVRIVLLD---WKMPGMDGMECARRIRALALPRPPAVIIVTAYGREEIR 594

Query: 655 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILI 714
            N    GV     ++KP+  S+L  ++   +G  +             L  +L GR++L+
Sbjct: 595 HNAENAGVD--GFLLKPVGRSVLFDTIAMTVGPADMLKTGGAAGEREPLPEVLRGRRVLV 652

Query: 715 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATK 774
           V+DN +N +VA   L++ G +V     G+ A  LL    ++ A  MD+QMP MDG E  +
Sbjct: 653 VEDNAINQQVARELLEQAGLSVDVAGDGEHALRLLA-RERYAAVLMDVQMPVMDGLETAR 711

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
            IR               S  A+ +     +P++AMTA  +    E  L +GM+ ++ KP
Sbjct: 712 RIR---------------SDPAFAD-----LPVIAMTAHALARDREASLAAGMNDHIGKP 751

Query: 835 FEAEQLYREVSRFFPPIPD 853
            +  +LY  ++R+  P  D
Sbjct: 752 VDPRELYAVLARWMAPGGD 770


>gi|149190709|ref|ZP_01868976.1| Signal transduction histidine kinase [Vibrio shilonii AK1]
 gi|148835475|gb|EDL52445.1| Signal transduction histidine kinase [Vibrio shilonii AK1]
          Length = 832

 Score =  251 bits (642), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 175/587 (29%), Positives = 276/587 (47%), Gaps = 80/587 (13%)

Query: 263 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVE 322
           FL+T+SHEIRTPMNGV+GM ++L+DT+LD  Q     T + S ++L+S+IN++LD +K+E
Sbjct: 305 FLSTMSHEIRTPMNGVIGMTNLLLDTKLDEQQIRMTETTKNSAESLLSIINDILDFSKIE 364

Query: 323 SGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITN 382
           +GK++LE + F+L  +++DV ++    ++ KG++L    +  +     GDPGR RQ++ N
Sbjct: 365 AGKIDLELIDFDLGEVVEDVGAMLYFAAEQKGIQLVCPATPVMDLCYRGDPGRIRQVLNN 424

Query: 383 LMGNSIKFTEKGHIFVTVYLVEE-VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTF 441
           L+ N+IKFTE G + V V + E+ + DSI                               
Sbjct: 425 LVSNAIKFTEDGEVAVYVTVDEKRLTDSI------------------------------- 453

Query: 442 NQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGL 501
                             L   + DTG GI  E Q ++F+ F Q   S +R +GGTG+GL
Sbjct: 454 ------------------LRFEIRDTGIGISEEQQQKLFSRFSQADSSTTRKYGGTGLGL 495

Query: 502 SISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQG 561
           SISK L   M GEIG  S    GSTF FT    N S        Q +   P   + + + 
Sbjct: 496 SISKRLTEIMGGEIGVTSETGKGSTFWFTVCLENSS-------KQSVVYLP---TGDLKK 545

Query: 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKD 621
            + LVVD       +      R  I  +V +   + L  +A   K      +    ++  
Sbjct: 546 QRILVVDDNDTNCNLLEQIFTRWEIPYQVANSGEEALRVLADNHKQQQFFTIAILDYQMP 605

Query: 622 TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 681
                     ++       ++L + ++ +    A            + KP++ + L + L
Sbjct: 606 NMDGVELAKQIQDNPDYNDTRLVMFSSVVQRGDAK-KMQKAGFSGYLTKPMQQADLLSVL 664

Query: 682 QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVER 741
           ++  G+        +       +      +ILIVDD   N  V  + L ++G  V   + 
Sbjct: 665 EKVSGLSGSDRSEAFVTRHTPAKKTQYNARILIVDDVTTNQVVLQSLLSKFGIKVDKAKN 724

Query: 742 GKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS 801
           G +A   L  P  +D  +MD QMPEMDG+EAT+ IR      N R            N++
Sbjct: 725 GLEALAALRTPANYDLVYMDCQMPEMDGYEATREIR------NTR------------NIN 766

Query: 802 -NFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
            N  +P++AMTA+ +Q   E+CL +GMD Y+SKP  A+ L   + R+
Sbjct: 767 INHSIPVVAMTANALQGDREKCLEAGMDDYISKPINAKALGESLERW 813


>gi|23014385|ref|ZP_00054204.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
            magnetotacticum MS-1]
          Length = 1193

 Score =  251 bits (642), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 190/622 (30%), Positives = 287/622 (46%), Gaps = 122/622 (19%)

Query: 253  AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
            AE A  AKS FLAT+SHEIRTPMNGVL M  +L D  L   Q++  R  + S  +L+++I
Sbjct: 523  AEEASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPLPAEQREMARVIRDSATSLLTII 582

Query: 313  NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
            N++LD +K+E+ KL+LE V  +L  +++ V  L + ++Q+KG+ L  +I   + + +IGD
Sbjct: 583  NDILDFSKIEADKLQLELVELSLSELVEGVADLLTIRAQEKGISLITFIDPALTDMVIGD 642

Query: 373  PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 432
            P R RQIITNL GN+IKFT+KG++ ++V  ++     + +E                   
Sbjct: 643  PIRLRQIITNLAGNAIKFTDKGYVRISVRALDPRERPLRLE------------------- 683

Query: 433  HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492
                    FN                     + DTG G+  E Q+R+F PFMQ   +ISR
Sbjct: 684  --------FN---------------------ITDTGIGLDSEQQARLFEPFMQADVTISR 714

Query: 493  THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 552
             +GGTG+GLSI + LV  M GEIG  S    GSTF F                 Q+  +P
Sbjct: 715  RYGGTGLGLSICRRLVAMMDGEIGVRSNMGQGSTFWF-----------------QVPLEP 757

Query: 553  NSVSSE----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII 608
              V+ E      G+  LV+   P+ A+  R ++  LG QV VV         + +   + 
Sbjct: 758  ADVAPEETPDLSGIAVLVLAEGPVAAECLRQYLGHLGAQVAVV---------VGAEGAVA 808

Query: 609  NMILVEQEVWEKDTSVSTLFVNNLRKLGCG----------FQSKLFLLANSISSSRANTS 658
             +       W  D ++     +   +LG             + K+ LL    + +   + 
Sbjct: 809  AVRAAALAGWTYDVALLDDGQDFRMRLGVAGALMTAAGPDLELKVALLVAKEAFAAVASE 868

Query: 659  TDGVSIPSVIMKPLRSSML----AASLQRAM-------GVGNKGNIRNWELPSMSLRHLL 707
                 + + + KP+R   L    A ++ RAM       GVG +     W  P+       
Sbjct: 869  IKAAGLYAALPKPIRRRQLWRNVAVAVGRAMPEAESADGVGAE---EGWRPPTTE-EAAA 924

Query: 708  LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
             G  IL+ +DN  N  V    ++R G A+  V  G +A E  M    +     D  MPEM
Sbjct: 925  AGALILVAEDNPTNKVVIRHLMERLGYAIEVVGNGAEAWE-RMQIRDYGLLLTDCHMPEM 983

Query: 768  DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
            DG+E T+ IRE                  +E  +   +PI+A+TAD +  T   CL  GM
Sbjct: 984  DGYELTQRIRE------------------WEVETGHLLPIVALTADALAGTARRCLDCGM 1025

Query: 828  DGYVSKPFEAEQLYREVSRFFP 849
            + +++KP +  QL   + R  P
Sbjct: 1026 NAFLAKPIDLIQLDATIRRLLP 1047


>gi|217972048|ref|YP_002356799.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
 gi|217497183|gb|ACK45376.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 1792

 Score =  251 bits (642), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 187/618 (30%), Positives = 306/618 (49%), Gaps = 97/618 (15%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++A+AA  AK  FLA +SHEIRTPMN ++GM  + + TELD  Q++YV   + + ++L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            S+IN++LD +K+E+GKL++++V F L  +L+D+  +FS K+  K +EL   ++  VP  L
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYL 1152

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GD  R  Q++ NLM N+IKFTE+G + +++ LVE+  D + +   +  S   L+    A
Sbjct: 1153 LGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQA 1212

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                  K FK+F Q                      DT                     S
Sbjct: 1213 ------KLFKSFTQ---------------------ADT---------------------S 1224

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+I K LV  M G+IG  S    GSTF FT            H S   +
Sbjct: 1225 TTRKYGGTGLGLAICKQLVELMGGKIGVESQLGHGSTFYFTVKL---------HIS---D 1272

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ----CLSQIASGS 605
             Q   +  E +GM  LVVD       + R  ++ +G +V+ V    +    CL Q    +
Sbjct: 1273 GQKLVLEQELEGMSVLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAISRCLLQAYEVA 1332

Query: 606  ----KIINMILVE---QEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 658
                K+ NM  +E   Q   +  +   +                  L+ ++ +     T 
Sbjct: 1333 LIDWKMPNMDGLETARQIQLQAQSQSQSQSQPQSHPQPQPQPQPKILMVSAHADHEFLTQ 1392

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI---RNWELPSMSLRHLLLGRKILIV 715
             + +++   I KP+ +S L   +  A  +G +G +   R  E  +  L   L G++IL+V
Sbjct: 1393 IEQLALAGYISKPISASRLLDGIMNA--IGREGILPVRRRTEELAPQLLVPLQGKRILLV 1450

Query: 716  DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI 775
            +DN +NL+VA+  L++ G  +     G+ A + L   H FD   MD QMP MDG++AT+ 
Sbjct: 1451 EDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQH-FDLVLMDCQMPVMDGYQATQA 1509

Query: 776  IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
            IR          +R E++          ++P++AMTA+ +    + C+R+GM+ +++KP 
Sbjct: 1510 IR----------KRPELA----------NLPVVAMTANAMAGDRDMCIRAGMNDHIAKPI 1549

Query: 836  EAEQLYREVSRFFPPIPD 853
            E   LY+ + ++  P  D
Sbjct: 1550 EVNVLYQTLLKYLAPASD 1567


>gi|288940175|ref|YP_003442415.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288895547|gb|ADC61383.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 778

 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 211/758 (27%), Positives = 337/758 (44%), Gaps = 145/758 (19%)

Query: 115 PSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNV-YDITNLSHPISMYGS 173
           PS+  PN R +   GYL    D+   V     Q+  +   ++++ YD T+L+  I +   
Sbjct: 131 PSDTQPNARFQR--GYL----DVHMTV-----QIDGRPLGYMDLQYDTTDLTRRIWLQ-- 177

Query: 174 NVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAIST----------------SIG 217
                 +WL   +  G       +  R  +    P+  ++                 SIG
Sbjct: 178 ------VWLALVVFAGGLGLAFLLASRLHRLISEPIARVAVAMERITLDEDYGVRLGSIG 231

Query: 218 ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 277
              +A+L    F A + RI + + +   + E +  AE A+ AKS FLA +SHEIRTPMNG
Sbjct: 232 TDELATLT-RAFDAMLERIEQRDAE---LREARDAAERANRAKSHFLANMSHEIRTPMNG 287

Query: 278 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337
           ++GM ++L +T+L+  Q+D  R  Q S  AL+ +IN++LD +++E+G+LELE + F+ R 
Sbjct: 288 IIGMTELLQETDLNAAQRDCTRVIQDSAAALMRIINDILDMSRIEAGRLELERLDFDPRE 347

Query: 338 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 397
            ++  L      +Q KG+E A+ +   +P  L GDPGR RQI+TNL+ N+IKFTE+G + 
Sbjct: 348 SIERTLEPLREIAQRKGLEFAIELDPELPARLRGDPGRLRQILTNLVSNAIKFTEQGRVS 407

Query: 398 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 457
           VT+  +E                          R   W                      
Sbjct: 408 VTLDCLE--------------------------RTDDW---------------------- 419

Query: 458 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 517
           +  +++V DTG G+  E  SR+F  F Q   S  R +GGTG+GL+IS+ LV  M G I  
Sbjct: 420 VRFVIAVRDTGIGLSTEECSRLFERFSQADVSTRRRYGGTGLGLAISRQLVELMGGGIDV 479

Query: 518 VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 577
            S P +GS F    V  +  S             P +V     G++ LV+   P  A   
Sbjct: 480 ESKPGLGSVFRVELVLESSES-------------PPAVDRRLAGLQTLVLVQEPSLAAQL 526

Query: 578 RYHIQRLGIQVE----VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLR 633
              ++ LG+ VE    + +     L++ A G +  +++L+E E     TS +   ++ + 
Sbjct: 527 GGMLEDLGMSVEHQTSLAAAIESALTRAARG-QTFDVLLLEHEQLPAPTSPAGSLLHEM- 584

Query: 634 KLGCGFQSKLFLLANSISSSRANTSTDGV--SIPSVIMKPLRSSML--AASLQRAMGVGN 689
                  S   L    + +       D V   +P + + P    +    +++ R+ G G 
Sbjct: 585 -------SARALAVLRLRARGGAAGDDPVWGRLPEIGLPPTHVELQNGLSAIIRSRGAGG 637

Query: 690 KGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 749
            G     + PS+ LR       +L+ +DN  N +V    L      V     G+   E  
Sbjct: 638 HGEGAK-QRPSLGLR-------VLVAEDNPANQRVIEWMLTALDCEVELHPNGRSLLESF 689

Query: 750 MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 809
                 D   MD QMP MDG+E T+ +R++E     R                  VPI+A
Sbjct: 690 T-ARPADLVLMDCQMPVMDGYETTRRLRKLESALGRR------------------VPIIA 730

Query: 810 MTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
           +TA  +    E  + +GMD ++SKPF  E L   ++R+
Sbjct: 731 VTAQAMAGDRERVIAAGMDDHLSKPFTLEALATLLTRW 768


>gi|375132835|ref|YP_005049243.1| signal transduction histidine kinase-like protein [Vibrio furnissii
            NCTC 11218]
 gi|315182010|gb|ADT88923.1| signal transduction histidine kinase-like protein [Vibrio furnissii
            NCTC 11218]
          Length = 1268

 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 185/607 (30%), Positives = 297/607 (48%), Gaps = 89/607 (14%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + E K+ AE A+ AKS FLA +SHE+RTPMN +LG+L +  +T+L+  Q+DY+   Q + 
Sbjct: 519  LAEAKELAEQANRAKSDFLANMSHELRTPMNAILGLLQIAQNTDLNKQQRDYLNKTQNAA 578

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            ++L+ L+N++LD +KVE+GK+E+E   F+L  ++ +   L S   Q K +E+   I + V
Sbjct: 579  QSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMHETGILLSSNLQHKHLEIIYQIDEDV 638

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  LIGD  R RQI+ NL GN+IKFTE G + V          SI+ E+           
Sbjct: 639  PTYLIGDSLRLRQILLNLAGNAIKFTEAGEVKV----------SIQTESH---------- 678

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                DRC                           L ++V DTG G+  E Q  +F  F Q
Sbjct: 679  --DGDRC--------------------------VLRITVSDTGIGMTEEQQRIVFQGFSQ 710

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               SISR +GGTG+GLSI K+LVG M+G +   S   +GS F+FT   G           
Sbjct: 711  AESSISRRYGGTGLGLSIVKHLVGLMEGSVQVKSKQGVGSEFSFTVNLGCVDE------- 763

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIA 602
                 QP   +    G++ L+V+       +    +QRLG  V  V+D    L  + Q  
Sbjct: 764  ---ERQPEPSAELPDGLQVLIVEDNNTARLIFDDLLQRLGCHVTAVADAEHALDTIEQAD 820

Query: 603  SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
            +  +  +++ ++   W+           ++R      ++ L ++A +      +   +  
Sbjct: 821  ANGQPFDLLFID---WKLPGMDGLSLTQSVRHGMALSKTPLVVMATAFGRELLDEHLEET 877

Query: 663  S--IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
               + ++++KP+   M+  +L     V N+   R+ +L   +    LLG K+L+V+DN  
Sbjct: 878  QSLLDALLVKPVTPDMVKNTLLDV--VNNRNQPRDEQLGYRAQSQALLGLKLLLVEDNPT 935

Query: 721  NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
            N  VA   L + GA +V  E G +A   L    +F    MD+QMP+MDG+E T+ IR+M 
Sbjct: 936  NRLVATELLSQQGATIVEAESGVEALAAL-DQQEFSLVLMDVQMPDMDGYETTRRIRQMA 994

Query: 781  HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
            H  +                    +PILAMTA+ +      CL +GM+ +++KPF   ++
Sbjct: 995  HFAD--------------------LPILAMTANAMPEDKVACLNAGMNDHIAKPFHIGEV 1034

Query: 841  YREVSRF 847
              ++ ++
Sbjct: 1035 VEKILQY 1041


>gi|452966995|gb|EME72002.1| Signal transduction histidine kinase [Magnetospirillum sp. SO-1]
          Length = 1523

 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 177/596 (29%), Positives = 291/596 (48%), Gaps = 90/596 (15%)

Query: 251  KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 310
            +KAEAA  AK+ FLA +SHEIRTPMN ++GM  + + TEL+  Q+DYVR  Q SG+ L+ 
Sbjct: 868  EKAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKTELNPRQKDYVRKIQQSGQHLLG 927

Query: 311  LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 370
            +IN++LD +K+E+GKL +E     L  +LD+V +L + K+  KG+EL   +   VP  L+
Sbjct: 928  IINDILDFSKIEAGKLAVEHTEVYLDKVLDNVANLITEKTTAKGLELVFDVGSDVPNDLV 987

Query: 371  GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 430
            GDP R  QI+ N   N++KFTE G I + V L +++   + +  E               
Sbjct: 988  GDPLRLGQILINYANNAVKFTEAGEIAIRVRLGQDLGGEVVLRFE--------------- 1032

Query: 431  RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 490
                                             V DTG G+  E + R+F  F Q   S 
Sbjct: 1033 ---------------------------------VRDTGIGLSEEQRGRLFQSFQQADSST 1059

Query: 491  SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 550
            +R +GGTG+GL+ISK L   M G +G  S P  GSTF FTA  G G         +++  
Sbjct: 1060 TRKYGGTGLGLAISKKLAELMGGGVGVESEPGQGSTFWFTATLGKGKP------RRKLLP 1113

Query: 551  QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKI 607
            +P+      +G + LVVD       V    +  +  +V+ V      ++ + +   G   
Sbjct: 1114 RPD-----LRGRRMLVVDDNENARAVLVDMLAAMSFKVDDVESGALAVEAVRRTMGGDDA 1168

Query: 608  INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
              ++ ++ ++   D  + T +   ++ LG   ++   ++  +          +   I  V
Sbjct: 1169 YQIVFLDWQMPGMD-GIETAYA--IKGLGL-TRTPHMIMVTAHGREEVMAGAEHAGIEEV 1224

Query: 668  IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNVNLKVA 725
            ++KP+  S+L  +  R++G   +    +    +++   L  L G ++L+V+DN+ N +VA
Sbjct: 1225 LIKPVNPSLLFDAAMRSLGAVPEDEPDDSAGAAVNEADLSGLRGLRVLLVEDNDFNQQVA 1284

Query: 726  AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785
            +  L   G  V   E G  A E++     +D   MD+QMP MDG  AT+ IR +   F +
Sbjct: 1285 SELLADGGVVVELAENGAVAVEMV-GAAPYDMVLMDMQMPVMDGVTATREIRRL--GFGD 1341

Query: 786  RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
                               +PI+AMTA+ +QA  E+CL +GM+ +++KP + + ++
Sbjct: 1342 -------------------LPIIAMTANAMQADKEKCLEAGMNDHLAKPIDPDAMF 1378


>gi|357024389|ref|ZP_09086542.1| hybrid sensory histidine kinase [Mesorhizobium amorphae CCNWGS0123]
 gi|355543743|gb|EHH12866.1| hybrid sensory histidine kinase [Mesorhizobium amorphae CCNWGS0123]
          Length = 1412

 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 191/639 (29%), Positives = 295/639 (46%), Gaps = 120/639 (18%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + E +++A  AD AKS+FLA +SHEIRTPMNGVLGM ++L  ++LD  Q+ +      SG
Sbjct: 847  LSEARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSDLDPKQKTFTDIIVKSG 906

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
             AL+++IN++LD +K+++G+L L+   FNL   ++DV +L S ++++K +EL V +   +
Sbjct: 907  NALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRVQPGL 966

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
                IGD GR RQI+TNL+GN++KFT++GH+ V V  V      +   T+L+        
Sbjct: 967  ESQFIGDVGRVRQIVTNLLGNAVKFTDEGHVLVDVTGVR-----VPAGTKLT-------- 1013

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                                +SV DTG GIP E    +F  F Q
Sbjct: 1014 ------------------------------------ISVTDTGIGIPEEKLKAVFEKFNQ 1037

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
            V  S +R H GTG+GL+I+  LV  M+GEIG  S    GSTF FT         + +   
Sbjct: 1038 VDTSSTRRHEGTGLGLAITSRLVELMEGEIGVESAEGKGSTFWFTVTL----PRAEQQGG 1093

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL---GIQVEVVSDQLQCLSQIA 602
            Q++   P  V+    G + L+VD   +   +    +          E  ++ L+ L   A
Sbjct: 1094 QRI--MPVDVT----GARVLIVDDNAVNRSILSEQMASWTFDSCAAESGAEGLKVLIAAA 1147

Query: 603  SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
            +    ++ ++++ ++     +     V N      G      ++  S+  S ANTS   +
Sbjct: 1148 AYGVPVDCVVLDYQMPNMSGAEMARIVRNT----AGLAHTPIIMLTSVDQSLANTSYRDL 1203

Query: 663  SIPSVIMKPLRSSM----LAASLQR-------------AMGVGNKGNIRNWELPSMSLRH 705
             I + ++KP RSS+    L A++QR             A G G +         + S+R 
Sbjct: 1204 GIDAQLIKPARSSVLLETLVATIQRHHHSEEANRVLPLASGGGAQALSTAQPSSTASVRA 1263

Query: 706  LL--------------LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-- 749
             L               G  IL+ +DN VN  V    L   G     V  G+KA +    
Sbjct: 1264 QLQPPPVRARVRATGERGLDILVAEDNEVNQMVFTQILGETGYGFEIVGNGRKALDAFGR 1323

Query: 750  MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 809
            + P       MD+ MPEM+G EAT  IR +E                    +  HVPI+ 
Sbjct: 1324 LNPRMI---LMDVSMPEMNGLEATAAIRRLEEE------------------TGTHVPIVG 1362

Query: 810  MTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            +TA  ++   E CL +GMD Y+ KP     L  ++ R+ 
Sbjct: 1363 VTAHALKGDRERCLEAGMDDYLPKPISPRALLEKLERWI 1401


>gi|428310395|ref|YP_007121372.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
 gi|428252007|gb|AFZ17966.1| PAS domain S-box [Microcoleus sp. PCC 7113]
          Length = 1392

 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 195/611 (31%), Positives = 301/611 (49%), Gaps = 88/611 (14%)

Query: 260  KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
            KSQFLA +SHEIRTPMNGVLGM  +L+ T L   Q +Y  T ++S + L+++IN++LD +
Sbjct: 703  KSQFLANMSHEIRTPMNGVLGMAGLLLQTPLTPQQLEYASTIRSSAEHLLTVINDILDFS 762

Query: 320  KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
            K+E+G+++LE++ F L + ++ V+ + + ++ +KG+ELA++IS  VP+ L GDP R RQI
Sbjct: 763  KLEAGEMQLESIDFELDSCIESVVDVLAAQAHEKGLELAMWISSDVPKMLKGDPNRLRQI 822

Query: 380  ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
            + NL+GN++KFT+ G + V V +  E       +T++S ++  ++ YP          F 
Sbjct: 823  LLNLVGNAVKFTDVGQVLVKVSVSRER----GTQTDISETQLPITHYP----------FP 868

Query: 440  TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
            ++                  L   V DTG GI  + Q ++F  F QV  S +R +GGTG+
Sbjct: 869  SY------------------LRFEVTDTGIGISAKDQEKLFQSFSQVDASTTRQYGGTGL 910

Query: 500  GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS---QQMNNQPNSVS 556
            GL I K LV  M GEIG  S  N GS F FTA F   S T  E  +        +   VS
Sbjct: 911  GLVICKQLVELMGGEIGVESALNQGSKFWFTASF--DSPTVGEAAACPLVLHKLKLLVVS 968

Query: 557  SEFQGMKALVVD-PRPIRAKVSRYHIQRLG----IQVEVVSDQLQCLS----QIASGS-- 605
            ++    +AL     R IR   S      L     +QV+   D L  L+     +A G+  
Sbjct: 969  AQTTTRQALCAALHRSIRLNDSAVPAGWLSDSWEMQVDEAVDTLTTLNALRLSVAQGNPY 1028

Query: 606  --KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT--STDG 661
               I+++ L + +          + V  +R      Q+KL ++    +S R +T    +G
Sbjct: 1029 HLAILDLQLPKPQ--------GAILVPMIRCDPTLAQTKLIVMT---TSDRLDTVQELEG 1077

Query: 662  VSIPSVIMKPLRSSMLAASLQRAMGVGNKGN-----IRNWELPSMSLRHLLLGRKILIVD 716
            + I   ++KP+R+S L   L  A       N         E  + + +      KIL+V+
Sbjct: 1078 MDISGYLIKPVRASRLLDCLVSAFAPQEPENQSRVSCEPKEATAQNPKPAKSALKILLVE 1137

Query: 717  DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
            D+ VN  V    L   G    CV  G++A   L     +D   MD QMP +DG++ T+ I
Sbjct: 1138 DHEVNQMVTLNQLAMLGFEADCVGNGEEAIAQLT-QQNYDLVLMDCQMPILDGYDTTQEI 1196

Query: 777  REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
            R  E                    S  H  I+A+TA  +    ++C+ +GMD Y+SKP  
Sbjct: 1197 RRREG-------------------SERHTTIIALTAHALPNDRQKCIDAGMDDYLSKPIA 1237

Query: 837  AEQLYREVSRF 847
             E L   + R+
Sbjct: 1238 QEALGAMIERW 1248


>gi|301069192|dbj|BAJ11975.1| histidine kinase ExpS [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 933

 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 194/609 (31%), Positives = 295/609 (48%), Gaps = 112/609 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T L+ TQ DY+ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLNTTQTDYLLTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F+L   LDDV+ L +  + +KG+EL + I + VPE  
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +QIITNL+GN+IKFTE+G+I + V    + +  +++E                
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHHVQLE---------------- 446

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                           V + DTG GI    QS++F  F Q   S
Sbjct: 447 --------------------------------VQIRDTGIGIAELQQSQLFQAFRQADTS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S  + GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTFWF-------------HITLPLN 521

Query: 550 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIA 602
             P+++ +E      QG     V+  PI A+ +      L I  Q  ++        Q+ 
Sbjct: 522 --PHAIPTEPAYTMLQGKHLAYVEYHPIAAQAT------LDILSQTPLIVSYSPTFEQLP 573

Query: 603 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA-NTSTDG 661
            G    +++L+   V  ++T +   +   LR + C     + L   S++   A    T G
Sbjct: 574 EGE--FDILLLGIPVQYRNTLLD--YTPRLRDI-CRRSPCVILALPSLAQMDAEQLKTFG 628

Query: 662 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL-LGRKILIVDDNNV 720
           V   + + KPL +S L   LQ +          +      + RHL  L  +++ VDDN  
Sbjct: 629 VH--ACLSKPLAASRLLPLLQDSTLFQFSFLPDDTASHQSAARHLARLPLRVMAVDDNPA 686

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
           NLK+    L+     ++  E G+ A    EL    +Q D   MDIQMP MDG  A+++IR
Sbjct: 687 NLKLIGTLLEEQVETIILCESGQDAIAQAEL----NQCDIILMDIQMPGMDGICASELIR 742

Query: 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
           ++ H+                       PI+A+TA  +    E  LRSGMD Y++KP + 
Sbjct: 743 QIPHHATT--------------------PIIAVTAQTMTGEREHLLRSGMDDYLAKPIDE 782

Query: 838 EQLYREVSR 846
           + L   ++R
Sbjct: 783 QMLKSVLTR 791


>gi|358008818|gb|AET99086.1| sensor kinase [Pantoea agglomerans pv. gypsophilae]
          Length = 909

 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 198/619 (31%), Positives = 294/619 (47%), Gaps = 135/619 (21%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGVLG    ++ T+L  TQ+DY++T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQLRTTQRDYMQTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LEA+ F LRA LD+ L L +  + DKG+EL V     VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTVVCDSSVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGD  R +QI+ NL+GN+IKFTEKG+I + V   + V+    VE E              
Sbjct: 403 IGDALRLQQILINLIGNAIKFTEKGYIGLRVG--QRVITQTRVELE-------------- 446

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                           + VED+G GI  + Q+++F  F Q   S
Sbjct: 447 --------------------------------IQVEDSGIGISEQQQTQLFQAFRQADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M GEI F S P+ GSTF                   Q++
Sbjct: 475 ISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQGSTFVIRV---------------QLD 519

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS----QI---- 601
             PN+      GM      PR + A +S   I  +     V S  L+ LS    QI    
Sbjct: 520 LNPNA-----PGM------PRVLDA-LSHARIAYVEADANVASAALEMLSATPLQIDYSE 567

Query: 602 ------ASGSKIINMIL---VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 652
                 AS   ++ M +   + Q     +  ++ L  +    +     S + LLA+ +  
Sbjct: 568 TLEGLKASHYPLLLMAMPVDISQPELLNERMINALL-DRADNVLMALPSPMMLLADELKV 626

Query: 653 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRK 711
                      I   I KP+       SL R + +    + R   ELP +S R   L   
Sbjct: 627 R---------GIDGCIAKPI-------SLTRLLPMLLDLHTRQISELP-LSPR---LPLT 666

Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
           ++ VDDN  NLK+  A L+     ++     + A          D   MDIQMP++DG  
Sbjct: 667 VMAVDDNPANLKLIGALLEEQVQNILLCSSAEHAIR-EARQQSLDVILMDIQMPDIDGIR 725

Query: 772 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
           A++IIR M H+ +                     PI+A+TA  I    E+ +++GM+ Y+
Sbjct: 726 ASEIIRSMPHHAST--------------------PIVAVTAHAIDGEREQLIKAGMNDYL 765

Query: 832 SKPFEAEQLYREVSRFFPP 850
           +KP +  +L + ++R+ PP
Sbjct: 766 AKPIDESKLRQLLARYTPP 784


>gi|254784466|ref|YP_003071894.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237686265|gb|ACR13529.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 781

 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 183/600 (30%), Positives = 290/600 (48%), Gaps = 98/600 (16%)

Query: 251 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 310
           ++ +AA+ AKSQF+AT+SHEIRTPMNGV+GM++ML DT L+ +Q+ Y+     SG++L+ 
Sbjct: 258 ERVKAANQAKSQFIATMSHEIRTPMNGVIGMIEMLRDTPLNDSQKHYLDVIFRSGESLLE 317

Query: 311 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 370
           +IN++LD +K+E+GK+ LE V F+L  +L+D + LFS  +  + +E    IS   P  L 
Sbjct: 318 IINDILDYSKIEAGKMNLENVDFDLNELLNDCVQLFSATTHKRDIEFVCAISPETPTQLR 377

Query: 371 GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 430
           GDP R RQI+ NL+GN+ KFT  GH+ V V                 S ++  S +P+  
Sbjct: 378 GDPTRLRQIVVNLIGNAFKFTSNGHVMVLV----------------KSLQDRTSEHPL-- 419

Query: 431 RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 490
                                        L  S+ D+G GI  E Q  +F  F Q   S 
Sbjct: 420 -----------------------------LRFSIVDSGIGISKEIQRNLFQAFNQADTST 450

Query: 491 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 550
           +R +GGTG+GL+I K L   M G IG  S    GSTF FT  F            +    
Sbjct: 451 TRRYGGTGLGLAICKQLAELMGGTIGVESEYGKGSTFWFTIRFD---------LPEDRQR 501

Query: 551 QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS--KII 608
           QP S S    G + L +   P+       + +   ++   VS     L ++ + +  +I 
Sbjct: 502 QPPSSSLALSGKRILAIHSSPVLVTAFADNCEGYNMKCHHVSKASDALKRLTNQTPDQIY 561

Query: 609 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 668
           + + ++Q +  +D         ++R++    ++ + +L +  ++    T    + I S++
Sbjct: 562 DFLFLDQRIDGED---GFALAQSIREIPAYAETPILMLTHERTTKF--TMEQLMPITSIL 616

Query: 669 MKP-----LRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK--ILIVDDNNVN 721
            +P     LR+++LA S   A+           EL SM  + +   +K  +L+ +DN VN
Sbjct: 617 PRPLTAHGLRTALLAQSTGVALN----------ELISMESKAIAPAQKLNVLVAEDNAVN 666

Query: 722 LKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
             V    L ++    V  E G++A T       +FD  FMD +MP MDGFEAT+ IRE E
Sbjct: 667 RMVIEGLLNKHEIEPVFAEDGQEAVTAFETASPRFDLIFMDCEMPNMDGFEATEKIREYE 726

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                            +N +   +PI+A+TA V     +     GM+ Y++KP   ++L
Sbjct: 727 -----------------KNRALTPMPIIALTAHVEAEHRQRVFNVGMNYYLTKPVTMDKL 769


>gi|227329138|ref|ZP_03833162.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 931

 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 194/609 (31%), Positives = 295/609 (48%), Gaps = 112/609 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T L+ TQ DY+ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLNTTQTDYLLTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F+L   LDDV+ L +  + +KG+EL + I + VPE  
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +QIITNL+GN+IKFTE+G+I + V    + +  +++E                
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHQVQLE---------------- 446

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                           V + DTG GI    QS++F  F Q   S
Sbjct: 447 --------------------------------VQIRDTGIGIAELQQSQLFQAFRQADTS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S  + GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTFWF-------------HITLPLN 521

Query: 550 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIA 602
             P+++ +E      QG     V+  PI A+ +      L I  Q  ++        Q+ 
Sbjct: 522 --PHAIPTEPAYTMLQGKHLAYVEYHPIAAQAT------LDILSQTPLIVSYSPTFEQLP 573

Query: 603 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA-NTSTDG 661
            G    +++L+   V  ++T +   +   LR + C     + L   S++   A    T G
Sbjct: 574 EGE--FDILLLGIPVQYRNTLLD--YTPRLRDI-CRRSPCVILALPSLAQMDAEQLKTFG 628

Query: 662 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL-LGRKILIVDDNNV 720
           V   + + KPL +S L   LQ +          +      + RHL  L  +++ VDDN  
Sbjct: 629 VH--ACLSKPLAASRLLPLLQDSTLFQFSFLPDDTASHQSAARHLARLPLRVMAVDDNPA 686

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
           NLK+    L+     ++  E G+ A    EL    +Q D   MDIQMP MDG  A+++IR
Sbjct: 687 NLKLIGTLLEEQVETIILCESGQDAIAQAEL----NQCDIILMDIQMPGMDGICASELIR 742

Query: 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
           ++ H+                       PI+A+TA  +    E  LRSGMD Y++KP + 
Sbjct: 743 QIPHHATT--------------------PIIAVTAQTMTGEREHLLRSGMDDYLAKPIDE 782

Query: 838 EQLYREVSR 846
           + L   ++R
Sbjct: 783 QMLKSVLTR 791


>gi|390437403|ref|ZP_10225941.1| hybrid sensory histidine kinase BarA [Pantoea agglomerans IG1]
          Length = 909

 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 198/619 (31%), Positives = 294/619 (47%), Gaps = 135/619 (21%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGVLG    ++ T+L  TQ+DY++T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQLRTTQRDYMQTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LEA+ F LRA LD+ L L +  + DKG+EL V     VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTVVCDSSVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGD  R +QI+ NL+GN+IKFTEKG+I + V   + V+    VE E              
Sbjct: 403 IGDALRLQQILINLIGNAIKFTEKGYIGLRVG--QRVITQSRVELE-------------- 446

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                           + VED+G GI  + Q+++F  F Q   S
Sbjct: 447 --------------------------------IQVEDSGIGISEQQQTQLFQAFRQADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M GEI F S P+ GSTF                   Q++
Sbjct: 475 ISRRHGGTGLGLVITQKLVREMGGEITFSSQPDKGSTFVIRV---------------QLD 519

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS----QI---- 601
             PN+      GM      PR + A +S   I  +     V S  L+ LS    QI    
Sbjct: 520 LNPNA-----PGM------PRVLDA-LSHARIAYVEADANVASAALEMLSATPLQIDYSE 567

Query: 602 ------ASGSKIINMIL---VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 652
                 AS   ++ M +   + Q     +  ++ L  +    +     S + LLA+ +  
Sbjct: 568 TLEGLKASHYPLLLMAMPVDISQPELLNERMINALL-DRADNVLMALPSPMMLLADELKV 626

Query: 653 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRK 711
                      I   I KP+       SL R + +    + R   ELP +S R   L   
Sbjct: 627 R---------GIDGCIAKPI-------SLTRLLPMLLDLHTRQISELP-LSPR---LPLT 666

Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
           ++ VDDN  NLK+  A L+     ++     + A          D   MDIQMP++DG  
Sbjct: 667 VMAVDDNPANLKLIGALLEEQVQNILLCSSAEHAIR-EARQQSLDVILMDIQMPDIDGIR 725

Query: 772 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
           A++IIR M H+ +                     PI+A+TA  I    E+ +++GM+ Y+
Sbjct: 726 ASEIIRSMPHHAST--------------------PIVAVTAHAIDGEREQLIKAGMNDYL 765

Query: 832 SKPFEAEQLYREVSRFFPP 850
           +KP +  +L + ++R+ PP
Sbjct: 766 AKPIDESKLRQLLARYTPP 784


>gi|357404372|ref|YP_004916296.1| Multi-sensor hybrid histidine kinase (modular protein)
            [Methylomicrobium alcaliphilum 20Z]
 gi|351717037|emb|CCE22702.1| Multi-sensor hybrid histidine kinase (modular protein)
            [Methylomicrobium alcaliphilum 20Z]
          Length = 1528

 Score =  251 bits (640), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 180/621 (28%), Positives = 292/621 (47%), Gaps = 100/621 (16%)

Query: 236  IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 295
            I   +E    ++E K+ AE A+ AKS FLA +SHEIRTPMN +LG+  ++++T+L+  Q+
Sbjct: 781  IGARKETEAALIEAKQSAETANRAKSAFLANMSHEIRTPMNAILGLTQLVLETDLNARQK 840

Query: 296  DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 355
            D+++   AS KAL+S++N+VLD +K+E+G+LE++ VSF + ++L  V  LF+ + ++KG+
Sbjct: 841  DFLQKVHASSKALLSILNDVLDYSKIEAGRLEIDRVSFRVESVLTSVADLFAARIEEKGL 900

Query: 356  ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415
            EL   I      TLIGDP R  Q++ NL+GN+IKFT +G + + V  +E+  DS+ ++  
Sbjct: 901  ELFFEIEALANRTLIGDPLRLTQVLNNLVGNAIKFTNEGEVHIKVEAIEQSDDSLLLQ-- 958

Query: 416  LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 475
                                                           SV DTG G+  E 
Sbjct: 959  ----------------------------------------------FSVRDTGIGLSQEK 972

Query: 476  QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535
               +F PF Q   SI+R  GGTG+GL+I   +V  M G IG   +   G+ FTFT   G 
Sbjct: 973  AELLFQPFTQADSSITRQFGGTGLGLAICSKIVALMGGTIGAAGVEGKGAVFTFTVRVGI 1032

Query: 536  GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 595
             +               N   S  +  + LVVD +     +    +   G+  +      
Sbjct: 1033 EAEAPQ-----------NLDLSRIRAQRVLVVDDQSTSRLILECLLTEWGVICDTSDSGE 1081

Query: 596  QCLSQIASGSKI---INMILVEQEVWE----KDTSVSTLFVNNLRKLGCGFQSKLFLLAN 648
              L QI    +     + +L++   W         V+    N+ RK G        ++  
Sbjct: 1082 DALRQIYRAEQKNCPFSTVLLD---WRMPGMSGAEVAERLENDCRK-GLLKHPLTVIMIT 1137

Query: 649  SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL 708
            +    +     D +    ++ KP+  S+L  +L      G+    +  +    ++R  L 
Sbjct: 1138 AYDKEQLLAQADRIHFDKILTKPVTPSVLYETL-----AGHSVIPKPEDKALGAIR--LD 1190

Query: 709  GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768
            G KIL+V+DN +N +V    L+  GA+V   E G+ A + L     FD   MD+QMPEMD
Sbjct: 1191 GVKILVVEDNALNQEVVVEILQNRGASVTVAENGRVALDKL-EQEIFDIVLMDLQMPEMD 1249

Query: 769  GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH-VPILAMTADVIQATYEECLRSGM 827
            GFEAT+ I+                      + ++H +P++ M+A V+      C  +G 
Sbjct: 1250 GFEATRRIKA---------------------IPDYHALPVVVMSAAVMPEERARCRLAGA 1288

Query: 828  DGYVSKPFEAEQLYREVSRFF 848
            D +V+KP +   L R + ++ 
Sbjct: 1289 DDFVAKPVDPGDLERLLVKWL 1309


>gi|372275091|ref|ZP_09511127.1| hybrid sensory histidine kinase BarA [Pantoea sp. SL1_M5]
          Length = 909

 Score =  251 bits (640), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 198/619 (31%), Positives = 294/619 (47%), Gaps = 135/619 (21%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGVLG    ++ T+L  TQ+DY++T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQLRTTQRDYMQTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LEA+ F LRA LD+ L L +  + DKG+EL V     VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTVVCDSSVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGD  R +QI+ NL+GN+IKFTEKG+I + V   + V+    VE E              
Sbjct: 403 IGDALRLQQILINLIGNAIKFTEKGYIGLRVG--QRVITQSRVELE-------------- 446

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                           + VED+G GI  + Q+++F  F Q   S
Sbjct: 447 --------------------------------IQVEDSGIGISEQQQTQLFQAFRQADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M GEI F S P+ GSTF                   Q++
Sbjct: 475 ISRRHGGTGLGLVITQKLVREMGGEITFSSQPDKGSTFVIRV---------------QLD 519

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS----QI---- 601
             PN+      GM      PR + A +S   I  +     V S  L+ LS    QI    
Sbjct: 520 LNPNA-----PGM------PRVLDA-LSHARIAYVEADANVASAALEMLSATPLQIDYSE 567

Query: 602 ------ASGSKIINMIL---VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 652
                 AS   ++ M +   + Q     +  ++ L  +    +     S + LLA+ +  
Sbjct: 568 TLEGLKASHYPLLLMAMPVDISQPELLNERMINALL-DRADNVLMALPSPMMLLADELKV 626

Query: 653 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRK 711
                      I   I KP+       SL R + +    + R   ELP +S R   L   
Sbjct: 627 R---------GIDGCIAKPI-------SLTRLLPMLLDLHTRQISELP-LSPR---LPLT 666

Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
           ++ VDDN  NLK+  A L+     ++     + A          D   MDIQMP++DG  
Sbjct: 667 VMAVDDNPANLKLIGALLEEQVQNILLCSSAEHAIR-EARQQSLDVILMDIQMPDIDGIR 725

Query: 772 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
           A++IIR M H+ +                     PI+A+TA  I    E+ +++GM+ Y+
Sbjct: 726 ASEIIRSMPHHAST--------------------PIVAVTAHAIDGEREQLIKAGMNDYL 765

Query: 832 SKPFEAEQLYREVSRFFPP 850
           +KP +  +L + ++R+ PP
Sbjct: 766 AKPIDESKLRQLLARYTPP 784


>gi|428316381|ref|YP_007114263.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
            7112]
 gi|428240061|gb|AFZ05847.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
            7112]
          Length = 2009

 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 194/631 (30%), Positives = 308/631 (48%), Gaps = 95/631 (15%)

Query: 245  GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
             + + +++AEAA  AKS+FLA +SHEIRTPMN V+GM  +L+DTEL   Q+D++ T + S
Sbjct: 1314 ALEQTRQEAEAASRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELKAQQRDFIETIRNS 1373

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
            G  L+S+IN++LD +K+ESGKLELE    +LR  ++  +   + K+ +K +EL   I   
Sbjct: 1374 GDTLLSIINDILDFSKIESGKLELEKHPLSLRDCIEGAIDQLAVKADEKEIELGYLIHPL 1433

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
             P  ++GD  R RQI+ NL+ N+IKFTE G   VT+ +    VDS               
Sbjct: 1434 TPNFILGDVTRLRQILVNLLNNAIKFTETGE--VTISVQASAVDSD-------------- 1477

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                          KT ++ G+          L  +  +++DTG GIP     R+F  F 
Sbjct: 1478 --------------KTISEPGNL------PESLYEIQFAIQDTGIGIPANRLDRLFKSFS 1517

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEI-----GFV----------SIPN---IGST 526
            QV  S +R +GGTG+GL+ISK L   M G +     G+V          + P+   +GST
Sbjct: 1518 QVDASTTRQYGGTGLGLAISKRLSEMMNGMMWVESSGYVGGTPSPKWQPAKPHRVAMGST 1577

Query: 527  FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
            F FT V    SS + E       ++P  +  E  G + L+VD +P   ++     +  G+
Sbjct: 1578 FYFTIV---ASSVATEL------SEPMEMLPELSGKRLLIVDDQPTNRQILTLQAETWGM 1628

Query: 587  QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 646
            Q       ++ L+ + SG +  ++ +++ ++ + D       ++   K  C       +L
Sbjct: 1629 QSLAAPSAVEALNWLDSG-ETFDIAILDMQMPQMDGLTLASAIHQHPK--C--HRLPLVL 1683

Query: 647  ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL 706
              S+    A +S       + + KP++ S L   L   +    K   +  +LP      +
Sbjct: 1684 LTSMGYPEAGSSALSTHFAACLSKPIKQSQLYQILIHVLQAQPKKVQQ--QLPRSVEDDM 1741

Query: 707  LLGR----KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 762
             L +    +IL+ +D+ VN KVA   L+R G        G +  E L     +D   MD+
Sbjct: 1742 KLAQRLPLRILLAEDHLVNQKVALLLLERLGYRADIAANGLEVLEAL-NRQPYDVVLMDV 1800

Query: 763  QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 822
            QMPEMDG EA++ I + E   + R R                  I+AMTA+ +Q   + C
Sbjct: 1801 QMPEMDGLEASRRICQ-EWPAHTRPR------------------IIAMTANAMQGDRQVC 1841

Query: 823  LRSGMDGYVSKPFEAEQLYREVSRFFPPIPD 853
            L +GM+ Y+SKP   + L + +S+  PP P+
Sbjct: 1842 LDAGMNDYISKPIRVDALIQALSQ-CPPNPE 1871


>gi|149189915|ref|ZP_01868194.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1]
 gi|148836230|gb|EDL53188.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1]
          Length = 1202

 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 182/613 (29%), Positives = 304/613 (49%), Gaps = 107/613 (17%)

Query: 252  KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
            + + A  AKS FLA +SHEIRTPMN ++GM  + ++T+LD  Q+ Y+    +S +AL+ +
Sbjct: 481  QTQNASQAKSDFLANMSHEIRTPMNAIIGMSHLALETKLDNKQRHYISKVNSSAQALLGI 540

Query: 312  INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
            IN++LD +K+E+GK+E+E+++F+L ++L++V+SL    ++ K + L + ++  VP+ LIG
Sbjct: 541  INDILDFSKIEAGKVEIESINFSLDSVLEEVISLIDDSAKQKKLSLIIDVASDVPDQLIG 600

Query: 372  DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
            DP R +Q++TNL  N++KFTE G + V V                               
Sbjct: 601  DPLRIKQVLTNLTSNAVKFTETGEVRVKV------------------------------- 629

Query: 432  CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
                          ST+  +      IN   +V+DTG G+  E    +F  F Q   S +
Sbjct: 630  --------------STAMMRERECK-INF--AVKDTGIGMTREQIDSLFQSFSQADSSTT 672

Query: 492  RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 551
            R +GGTG+GLSI+K LV  M G++   S    G+ F+F+ V G   S +      Q+ +Q
Sbjct: 673  RKYGGTGLGLSITKNLVELMGGKVSVESRLGEGARFSFSLVLGVSESNATVFYPAQLQSQ 732

Query: 552  PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMI 611
                       K  ++D      +V    ++R+  +V+   D  Q  S +  G  I N++
Sbjct: 733  -----------KLALIDSSKESEQVVLSQLERIQCKVDSYRDLDQLESALNQGKTIPNVV 781

Query: 612  LVEQEVWEKDTSVSTLFVNNLRKLGCG-FQSKLFLLANSISSSRANT-----STDGVSIP 665
            L     W  + S +   + ++R+       +KL +L    S SR +       TD + + 
Sbjct: 782  LYG---WRNEVSDNIETILSMRERAPQVLTAKLIILC---SDSRQDIIEALEETD-IQVA 834

Query: 666  SVIMKP-----LRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL---GRKILIVDD 717
            SV+ KP     L  +++AA+L  +  VG      ++   S  L+  L    G K+L+V+D
Sbjct: 835  SVLEKPFTASTLHDALIAAALNESPRVG------HYRSHSEELKRALASLQGAKVLLVED 888

Query: 718  NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
            N +N +VA   L+  G +V  VE G++A   L     +D   MD QMP MDG+EAT+ IR
Sbjct: 889  NTINQEVARELLQSKGLSVDVVENGQEAVTSL-QSEIYDGVLMDCQMPIMDGYEATRNIR 947

Query: 778  EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
                                + +    +P++AMTA V+    E+ L  GM+  + KP   
Sbjct: 948  --------------------KELGLVELPVIAMTASVMIDDKEKALACGMNDVIGKPIIL 987

Query: 838  EQLYREVSRFFPP 850
            E++++ ++++  P
Sbjct: 988  EEMFQVMAKWIQP 1000


>gi|254445718|ref|ZP_05059194.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198260026|gb|EDY84334.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1149

 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 186/607 (30%), Positives = 300/607 (49%), Gaps = 104/607 (17%)

Query: 251  KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 310
            ++AE A+ AKS FLA +SHEIRTPMNG++GM  +L +T L+  Q DYV T +AS +AL+ 
Sbjct: 621  REAEEANRAKSYFLANMSHEIRTPMNGIIGMTGLLSETTLENEQHDYVDTIRASSEALLV 680

Query: 311  LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 370
            +IN++LD +K+ESGKLE+E + F+LR  +++ +   + ++ +KG++++      VP +L+
Sbjct: 681  VINDILDFSKIESGKLEIENIMFDLRDCMEEAIDTLAIQATEKGLDVSYVFGKEVPGSLL 740

Query: 371  GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 430
            GDP R RQ+I NL+GN++KFT KG + V V                              
Sbjct: 741  GDPTRLRQVIVNLIGNAVKFTAKGGVVVRV------------------------------ 770

Query: 431  RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 490
                              PF     D+I L   V DTG GIP +   R+F  F QV  S 
Sbjct: 771  -----------------DPFHIKDDDVI-LHFKVTDTGIGIPADRIDRLFGSFSQVDAST 812

Query: 491  SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 550
            +R +GGTG+GL+ISK LV  M G +   S    GSTF FT  F N ++ S +  + +   
Sbjct: 813  TRKYGGTGLGLAISKNLVELMGGSMWVESEDGEGSTFHFTVSF-NRAAFSFDMGATR--- 868

Query: 551  QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINM 610
            +P+ ++    G KA+V+D +    +     ++   ++V V    L  L  + S     N+
Sbjct: 869  KPDKIA----GNKAIVIDHQAFSCESLTSQLELFEVRV-VTGSTLGDLETLVSKHPDTNV 923

Query: 611  ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS-----ISSSRANTSTDGVSIP 665
            + VE       + +  L   +L++       K+  LA       I + R      G +  
Sbjct: 924  VFVE-------SGLGGLGYKDLKE-------KIRALAQRDDIRVIFTGRLGGVQLGENAD 969

Query: 666  SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----KILIVDDNNVN 721
            +  +  ++   L     R + +  K   R   +  ++     LG     +IL+ +DN +N
Sbjct: 970  AQTLSLIKPYKLENVKTRLLEICGKAAPR---IKKVAQDGTKLGEQKPLRILLAEDNVIN 1026

Query: 722  LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
             KVA    K+ G  +   + G +A  ++   ++F+  FMDIQMPEMDG EAT   RE+  
Sbjct: 1027 QKVAKRLFKKMGYEISVAQNGLEAVAMI-GENEFELVFMDIQMPEMDGLEAT---REIIK 1082

Query: 782  NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
             + +   R                 I+A+TA+ ++   E C  +GMDGY++KPF+ + L 
Sbjct: 1083 RWPSERPR-----------------IIALTANAMREDRENCFAAGMDGYLTKPFKLDDLK 1125

Query: 842  REVSRFF 848
              +++ +
Sbjct: 1126 DVIAKTY 1132


>gi|91974887|ref|YP_567546.1| ATPase-like ATP-binding protein [Rhodopseudomonas palustris BisB5]
 gi|91681343|gb|ABE37645.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 650

 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 184/613 (30%), Positives = 292/613 (47%), Gaps = 115/613 (18%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           ++ L+  A+A   AKS+ LA  SHEIRTP+NG++GM  +L+DT L   Q  YVR  + SG
Sbjct: 120 LLTLRDDADATTRAKSRLLAMASHEIRTPLNGIIGMSGLLLDTTLTPEQATYVRAVKTSG 179

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            AL+SLI+E+LD +K+++GK+EL+   F L A+++D+  L + ++Q + +E+A Y+ +R+
Sbjct: 180 DALLSLIDELLDYSKIDAGKIELDHRPFALAALIEDIAELLAPRAQARAIEIAAYVDERL 239

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
           P  +IGD  R RQ++ NL GN+IKFT  G     V L+ E                    
Sbjct: 240 PAQVIGDAARLRQVLLNLAGNAIKFTSSGG----VALIAE-------------------- 275

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                            +DG            I+L+  + DTG GI  EAQ+R+F  F Q
Sbjct: 276 --------------PGERDGE-----------IDLL--IRDTGIGIAPEAQARVFREFEQ 308

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               I+R +GGTG+GLSIS+ +V  M G I   S P IG+TFT +         +     
Sbjct: 309 ADDGIARNYGGTGLGLSISERIVSGMGGRIVLHSRPGIGTTFTVSIPLAAADDPAAAMAF 368

Query: 546 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
           +         + +  G   L+  P+ I A++  + +QR   +  VVSD            
Sbjct: 369 K---------APDLAGQTILIAAPQTIEAQLVAHRLQRWNAETRVVSD------------ 407

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA---NTSTDGV 662
                 L    V   D + S + ++     G    + L L A   ++ R    N S    
Sbjct: 408 ------LAAARVLLPDHAWSAILIDA--GFGVTEAAALALDAKLHATQRIVMLNPSIRAE 459

Query: 663 SIPSV-------IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL--RHLLLGRK-- 711
            +P +       ++KPLR++ LAA L  A+       I + + P ++   +   +GR+  
Sbjct: 460 LLPKLPAAFTGYLVKPLRAASLAARLGGALIDTAAPGIADSDTPGLAAPDQTAQVGRRLS 519

Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ----FDACFMDIQMPEM 767
           IL+ +DN++N  +  + L + G   V  + G++A +           FD   MD+QMP +
Sbjct: 520 ILVAEDNDINALLIRSLLTKLGHDAVIADDGEQALQSWRAASADGAPFDLVLMDVQMPLL 579

Query: 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
           DG  A++ IR  E    +R                   PILA+TA+ +      CL +GM
Sbjct: 580 DGIAASRQIRTYEAERQSR-----------------RTPILALTANSLAEDRAACLAAGM 622

Query: 828 DGYVSKPFEAEQL 840
           DG++ KP + ++L
Sbjct: 623 DGFLVKPLDRDRL 635


>gi|407695376|ref|YP_006820164.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
           domain-containing protein [Alcanivorax dieselolei B5]
 gi|407252714|gb|AFT69821.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax dieselolei B5]
          Length = 904

 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 194/607 (31%), Positives = 291/607 (47%), Gaps = 106/607 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +K+A  A   KS+FLA +SHEIRTP+NG++G   +L  ++L   QQDY+ T + S +AL+
Sbjct: 259 RKEALKASQIKSEFLANMSHEIRTPLNGIIGFTRLLERSDLSPRQQDYLNTIRKSAEALL 318

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN++LD +K+E+G+L LE +  NL  I++DV ++ +  +Q+KG+E A  I   +P  L
Sbjct: 319 SIINDILDFSKIEAGRLSLEHIPLNLHDIIEDVQTMLAPLAQEKGLEQAAIIYSDLPSHL 378

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R RQ++TNL+ N+IKFTE G + V   L E                         
Sbjct: 379 LGDPLRIRQVLTNLVSNAIKFTEHGSVVVRAMLEE------------------------- 413

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                        Q G+ +  K          ++V DTG G+  + Q  +F  F Q   S
Sbjct: 414 -------------QKGAEAVVK----------ITVTDTGNGLSEDVQRGLFNAFTQADQS 450

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            SR  GGTG+GL+ISK LV  M GEIG  S P+ GSTF FT               + + 
Sbjct: 451 ASRRAGGTGLGLAISKRLVEGMGGEIGIDSTPSQGSTFWFTL-----------RCERDVG 499

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
            +P S  +E   +   +V+     A++  YH+          S     +S+I  G  +++
Sbjct: 500 TRPESPPAELARLSVTLVEASEY-ARLGLYHM---------FSGWRMRISEI-QGMDVLD 548

Query: 610 MILVEQEVWEKDTSVSTL---------FVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 660
             L  + + E D  V  +             +++L    Q+ + +LAN+     A+   D
Sbjct: 549 SHLAAENLPETDFYVVGVPAMTRDPVGLAPLIQRLARHSQAPVLVLANN-GDYLADELAD 607

Query: 661 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
                 V+ KP     L  +L    G+G   + R+ EL    L  L    ++L+VDD+  
Sbjct: 608 QPHC-RVLGKPATRRRLRDALLELSGLGGDRS-RHQEL----LTPLGYHPRVLVVDDHPG 661

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           NLK+A   L+  GA VV    G++A E       FD  FMD+ MP MDG E T  +RE  
Sbjct: 662 NLKLARIFLEELGAEVVPCAGGQEALEAF-SQGTFDLIFMDVHMPGMDGLETTLALRE-- 718

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                  R GE          +   PI+A+TA  ++      L +GMD Y+SKP   EQL
Sbjct: 719 -------REGE----------SQRTPIIALTAHALENEKRALLAAGMDDYLSKPITEEQL 761

Query: 841 YREVSRF 847
              + R+
Sbjct: 762 RHTLERW 768


>gi|75907252|ref|YP_321548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75700977|gb|ABA20653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1820

 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 201/681 (29%), Positives = 317/681 (46%), Gaps = 113/681 (16%)

Query: 198  RCR-FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAA 256
            +C+ F+Q  P  +  +      L IA     + +    +  ++      + + K+ AEAA
Sbjct: 1080 QCKYFRQWTPEEIELLEAVAAQLGIALAQAQLLEQETRQREELTIKNFALEQAKRAAEAA 1139

Query: 257  DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVL 316
            + AKS+FLA +SHEIRTPMN V+GM  +L+DTEL   Q+D+V T   SG AL+S+IN++L
Sbjct: 1140 NRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELTSQQRDFVETVLTSGDALLSIINDIL 1199

Query: 317  DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 376
            D +K+ESGKLELE   F +R  ++ V+ L + K+  K +ELA  I  +VP  + GD  R 
Sbjct: 1200 DFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLIHPQVPMQIAGDLTRL 1259

Query: 377  RQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 436
            RQI+TNL+ N+IKFT +G + V+V                                    
Sbjct: 1260 RQILTNLLNNAIKFTPEGEVVVSVR----------------------------------- 1284

Query: 437  GFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 496
                       SP    + +   +I +++DTG GI  E    +F PF+Q   S++R +GG
Sbjct: 1285 --------SQPSP-NQKTKNCCEIIFTIKDTGIGIAPETMDLLFQPFVQADASMTRKYGG 1335

Query: 497  TGIGLSISK--------YLVGRMKGEIGFVSIPN-------------IGSTFTFTAVFGN 535
            TG+GL ISK        YL    +G +G    P               GSTF F+     
Sbjct: 1336 TGLGLVISKRLGEMMGGYLWVESRGCVGGNPPPGWQRKNSISSASVATGSTFYFSMTVPV 1395

Query: 536  GSSTSNEHNSQQMNNQPNSVSSEFQ--GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 593
             +    E           S++S  Q  G + L+VD  P   ++ R   +   ++      
Sbjct: 1396 VAHADLE----------TSITSPVQLSGKRLLIVDDNPTNRQILRLQAEPWQMETYTAPS 1445

Query: 594  QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 653
              + L+ I  G    ++ +++ ++ E D          +R+        L +L    S  
Sbjct: 1446 GAEALALIDQGMA-FDIAILDVQMPEMD---GLTLARQIRQRPSYQHLPLVILT---SWG 1498

Query: 654  RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR-HLLLGR-- 710
            + +T    +   + + KP++ S L   L  A  +GN+  IR   +P  S + +  L +  
Sbjct: 1499 QPDTDLSDIEFAACLNKPIKQSQLFDVL--AASLGNQP-IRASVVPDRSAQVNSCLAQQI 1555

Query: 711  --KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768
              +IL+ +D  VN KVA   LK+ G     V  G +  E L     +D   MD+ MPEMD
Sbjct: 1556 PLRILLAEDIVVNQKVALLILKKLGYRADVVANGLEVLEALQ-RQSYDVVLMDVNMPEMD 1614

Query: 769  GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
            G +A++II +    ++ R R        Y         I+AMTA+ ++   E CL +GMD
Sbjct: 1615 GLKASQIICQ---TWSPRSR-------PY---------IIAMTANAMRGDREACLAAGMD 1655

Query: 829  GYVSKPFEAEQLYREVSRFFP 849
             Y+SKP + E+L + + +  P
Sbjct: 1656 HYISKPLQLEELAKALGKCHP 1676


>gi|259156506|gb|ACV96450.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Mex1]
          Length = 1268

 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 192/634 (30%), Positives = 314/634 (49%), Gaps = 102/634 (16%)

Query: 221  IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
            +A  +G  F  T     +VE     + + K++AE+A+ AKS+FLA +SHEIRTPMNGVLG
Sbjct: 503  LAGFLGIAFDLTKQLKYEVE-----LAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLG 557

Query: 281  MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
            +L ++ ++ LD  Q DY+  A ++ K+L++L+N++LD +K+E+GKLEL+   F+L  +L 
Sbjct: 558  LLQLVANSTLDQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQ 617

Query: 341  DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
            D+  +FS  ++ KG+E+   ++  VPE L+GD  R +Q++ NL+GN+IKFT+KG I +++
Sbjct: 618  DIGLVFSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISI 677

Query: 401  YLVEEVVDSI-EVETELSSS-KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 458
                    S+ E E  LS S K+T  G  +  +   + GF+                   
Sbjct: 678  R-----SQSLPEGEINLSFSIKDTGIGITLEQQNALFSGFQ------------------- 713

Query: 459  NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 518
                                      Q   SISR +GGTG+GL+ISK LV  M GEIG  
Sbjct: 714  --------------------------QADSSISRRYGGTGLGLAISKRLVNLMGGEIGVE 747

Query: 519  SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSR 578
            S    GSTF+F  V  N    + +      N+Q  + S+E   +  L+VD       + +
Sbjct: 748  SEFGCGSTFSFNVVVRNAEKRAIQ------NSQTFTRSNE--KLSVLIVDDNDSSRIILQ 799

Query: 579  YHIQRLGIQVEVVSDQLQC---LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 635
                 LG Q ++ SD  +    + Q    S   +++ V+   W         F   LR+L
Sbjct: 800  GIAVSLGWQAKIASDAQEASLLVKQAHRDSTRYDVVFVD---WRMPGKDGLTFARELREL 856

Query: 636  GCGFQSKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 694
                 S + ++           + D    +   ++KP+  +M+  +++R +     G++ 
Sbjct: 857  HSSVVSLIVMITAHGKELLDEQNNDYERYLDGFLIKPVTKNMMLQAVKRVVF----GDL- 911

Query: 695  NWELPSMSLRHL--LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-MP 751
            +  LP+  L H   L G  +L+V+DN  N  VA+  L++ GA +     G++A E+L   
Sbjct: 912  DLSLPTSPLPHELPLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALEMLEST 971

Query: 752  PHQFDACFMDIQMPEMDGFEATKIIREM-EHNFNNRIRRGEVSIEAYENVSNFHVPILAM 810
               FD   MDIQMP MDG++ T+ IR++  H                       +PI+A+
Sbjct: 972  AEHFDMVLMDIQMPGMDGYQTTREIRKLPRHQL---------------------LPIIAI 1010

Query: 811  TADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
            TA  +      CL +GM  +++KPF+  +L  ++
Sbjct: 1011 TAHAMSDDIAACLAAGMQDHIAKPFDLNELTTKI 1044


>gi|77543221|gb|ABA87031.1| putative histidine kinase [Vibrio cholerae]
          Length = 1268

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 192/634 (30%), Positives = 314/634 (49%), Gaps = 102/634 (16%)

Query: 221  IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
            +A  +G  F  T     +VE     + + K++AE+A+ AKS+FLA +SHEIRTPMNGVLG
Sbjct: 503  LAGFLGIAFDLTKQLKYEVE-----LAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLG 557

Query: 281  MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
            +L ++ ++ LD  Q DY+  A ++ K+L++L+N++LD +K+E+GKLEL+   F+L  +L 
Sbjct: 558  LLQLVANSTLDQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQ 617

Query: 341  DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
            D+  +FS  ++ KG+E+   ++  VPE L+GD  R +Q++ NL+GN+IKFT+KG I +++
Sbjct: 618  DIGLVFSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISI 677

Query: 401  YLVEEVVDSI-EVETELSSS-KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 458
                    S+ E E  LS S K+T  G  +  +   + GF+                   
Sbjct: 678  R-----SQSLPEGEINLSFSIKDTGIGITLEQQNALFSGFQ------------------- 713

Query: 459  NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 518
                                      Q   SISR +GGTG+GL+ISK LV  M GEIG  
Sbjct: 714  --------------------------QADSSISRRYGGTGLGLAISKRLVNLMGGEIGVE 747

Query: 519  SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSR 578
            S    GSTF+F  V  N    + +      N+Q  + S+E   +  L+VD       + +
Sbjct: 748  SEFGCGSTFSFNVVVRNAEKRAIQ------NSQTFTRSNE--KLSVLIVDDNDSSRIILQ 799

Query: 579  YHIQRLGIQVEVVSDQLQC---LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 635
                 LG Q ++ SD  +    + Q    S   +++ V+   W         F   LR+L
Sbjct: 800  GIAVSLGWQAKIASDAQEASLLVKQAHRDSTRYDVVFVD---WRMPGKDGLTFARELREL 856

Query: 636  GCGFQSKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 694
                 S + ++           + D    +   ++KP+  +M+  +++R +     G++ 
Sbjct: 857  HSSVVSLIVMITAHGKELLDEQNNDYERYLDGFLIKPVTKNMMLQAVKRVVF----GDL- 911

Query: 695  NWELPSMSLRHL--LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-MP 751
            +  LP+  L H   L G  +L+V+DN  N  VA+  L++ GA +     G++A E+L   
Sbjct: 912  DLSLPTSPLPHELPLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALEMLEST 971

Query: 752  PHQFDACFMDIQMPEMDGFEATKIIREM-EHNFNNRIRRGEVSIEAYENVSNFHVPILAM 810
               FD   MDIQMP MDG++ T+ IR++  H                       +PI+A+
Sbjct: 972  AEHFDMVLMDIQMPGMDGYQTTREIRKLPRHQL---------------------LPIIAI 1010

Query: 811  TADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
            TA  +      CL +GM  +++KPF+  +L  ++
Sbjct: 1011 TAHAMSDDIAACLAAGMQDHIAKPFDLNELTTKI 1044


>gi|359436217|ref|ZP_09226335.1| sensor protein [Pseudoalteromonas sp. BSi20311]
 gi|358029077|dbj|GAA62584.1| sensor protein [Pseudoalteromonas sp. BSi20311]
          Length = 1111

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 182/638 (28%), Positives = 309/638 (48%), Gaps = 104/638 (16%)

Query: 218  ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 277
            ++ I +L+G +  ++  RI    E    +++ K+ AE A +AKS+FLA++SHEIRTPMNG
Sbjct: 568  LIAIGALIGSL-HSSEQRIETEAE----LVKAKEAAEQAVIAKSEFLASMSHEIRTPMNG 622

Query: 278  VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337
            VLGML+++  T LD  Q+ +++ AQ+S ++L+ +IN++LD +K+E+GKL++E + FNL  
Sbjct: 623  VLGMLNLIQTTSLDQQQRHHIKLAQSSAESLLGIINDILDFSKIEAGKLDIENIQFNLPK 682

Query: 338  ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 397
            +L +++  F+ K++    +L +  +      ++ DP R RQI+ NL+ N++KFT+ G + 
Sbjct: 683  LLGEIVESFALKAESNNTQLILDTTHVSTSEIVCDPNRLRQILNNLIANAVKFTQNGQVL 742

Query: 398  VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 457
            VT   +E+ +D+  +E                                            
Sbjct: 743  VTA-TIEKTLDNTTLE-------------------------------------------- 757

Query: 458  INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 517
                 ++ DTG GI L+ Q ++F  F Q   S +R +GGTG+GL+I K L   M GE+  
Sbjct: 758  ----CAIIDTGIGISLDKQKQLFDSFTQADASTTRQYGGTGLGLAIVKQLCELMGGEVSV 813

Query: 518  VSIPNIGSTFTF----TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIR 573
             S+PN GSTF F    T+V         +H                Q  + L+VD   + 
Sbjct: 814  NSLPNEGSTFAFSVNITSVIDQAFDLDCQH---------------IQAKRILIVDNSEMN 858

Query: 574  AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI-INMILVEQEVWEKDTSVSTLFVNNL 632
            A ++   +   G  V  V D  +  + I++  +   ++ +++    E    V+ L    L
Sbjct: 859  ATITEKQLMLWGADVSAVCDYEEVEAYISNHQQTPPDVAIIDSSFLE---PVAHLQAEKL 915

Query: 633  RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN 692
            +     F  K  +L  +  SS  ++   G    ++I KPL +  L  +L +         
Sbjct: 916  KH----FLEKSHVLIMAPMSSSKSSLFYGDKETALIFKPLTAIDLYDTLVKGTLAEQPKE 971

Query: 693  IRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--M 750
            +   EL +++      G  +L+V+DN VN  VA A LK+        E G+ A   L   
Sbjct: 972  V---ELSAINTPKKAKGH-VLLVEDNKVNQVVAGALLKQAELTFDIAEDGEDALTKLNQA 1027

Query: 751  PPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM 810
              + +    MD QMP MDG++AT  IRE      NR                  +PI+A+
Sbjct: 1028 TANTYQLILMDCQMPIMDGYQATMAIREGLAGQENR-----------------AIPIIAL 1070

Query: 811  TADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            TA+ +    E+CL +GM+ Y+SKP +   ++ ++ ++ 
Sbjct: 1071 TANAMHGDKEKCLNAGMNDYLSKPLDGPAMHAKLQQWL 1108


>gi|381160390|ref|ZP_09869622.1| PAS domain S-box [Thiorhodovibrio sp. 970]
 gi|380878454|gb|EIC20546.1| PAS domain S-box [Thiorhodovibrio sp. 970]
          Length = 1090

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 186/623 (29%), Positives = 303/623 (48%), Gaps = 78/623 (12%)

Query: 236 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 295
           +  +++    +   K++AE+A +AKS+FLA +SHEIRTPMN +LGM  + +D+ LD  Q+
Sbjct: 380 VTPMKQTEQALRRAKEEAESAALAKSEFLAKMSHEIRTPMNSILGMTKLTLDSRLDTEQR 439

Query: 296 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 355
           + +    A+ +AL++LI+++LD +K+E+ ++ ++ V F+L  + ++VL  F+ ++ +K +
Sbjct: 440 ENLEIVDAAAEALLALIDDILDFSKLEARRVLIDPVDFDLSVLFEEVLDGFALRAAEKEL 499

Query: 356 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415
           EL  +I  +VP  L GD  R RQ++ NL+GN+IKFT  G + ++V L  E          
Sbjct: 500 ELIEFIDPQVPLGLKGDNQRLRQVLINLLGNAIKFTATGEVVLSVELAPE---------- 549

Query: 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLIN--LIVSVEDTGQGIPL 473
                                       DG  +P       +    L  +V DTG G+  
Sbjct: 550 ------------------------NCGPDGPLAPPVPPVPRVQVKWLRFAVRDTGVGVAP 585

Query: 474 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533
           E Q+ IF+ F Q   S++R +GG+G+GLSIS+ LV  M G +   S    GS F+F    
Sbjct: 586 EKQADIFSAFQQADNSVTREYGGSGLGLSISRQLVELMGGRLELTSTLGQGSEFSFLLPL 645

Query: 534 GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV-- 591
              SS              N  + E +G++ LVVD      ++    +   G +   V  
Sbjct: 646 EPASSPL---------PSANLAAPELRGLRCLVVDDNSANRRLLVKTLNGWGCKPHAVPG 696

Query: 592 -SDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
            ++ L+ L Q  +      ++L++  +   D   S   +       CG    L L + S+
Sbjct: 697 GAEALEALQQAHAAGDPFRLVLLDLLMPGMDGEQSARAIQG--DGTCGAPDILLLASASV 754

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG-----VGNKGNIRNWELPSMSLRH 705
               A     GV   S+++KP++   L  ++ +A+      + +     N ++ S S R 
Sbjct: 755 RGQAARLRALGVR--SLLIKPVKHRQLLRAMSQALTLPLGPLADASQAANAKVVSQSPR- 811

Query: 706 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 765
              G ++L+V+D   N KVAA+ L R+G  V+    G +A E L     FD   MDIQMP
Sbjct: 812 -FAGAQVLLVEDRLFNRKVAASYLSRFGIEVMTAGNGLQALE-LSRTRAFDLILMDIQMP 869

Query: 766 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 825
            MDGF+ T  IR+   N N                     PI+AMTA  ++   ++CL++
Sbjct: 870 LMDGFQTTVAIRDEPGNLNR------------------STPIVAMTAQALEGDRDKCLQA 911

Query: 826 GMDGYVSKPFEAEQLYREVSRFF 848
           GMD Y+SKP   E L R + R+ 
Sbjct: 912 GMDDYLSKPIRLELLERALRRWL 934


>gi|350551561|ref|ZP_08920775.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
           700588]
 gi|349796928|gb|EGZ50709.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
           700588]
          Length = 1212

 Score =  250 bits (638), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 194/650 (29%), Positives = 301/650 (46%), Gaps = 117/650 (18%)

Query: 228 IFQATVNRIAKVEEDYHGMME----LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 283
           + QAT  ++ +  +  H MME    L   A+ A+ AKS+FLA +SHEIRTPMNGV+GM  
Sbjct: 431 MLQATNMQLREATKYAHEMMERATNLAIDADVANRAKSEFLANMSHEIRTPMNGVIGMTG 490

Query: 284 MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 343
           +LMDTEL   Q+ Y  +  +S ++L+SLIN++LD +K+E+GKL+LE + FNL  +LD+  
Sbjct: 491 LLMDTELTAQQRHYAESVLSSAESLLSLINDILDFSKIEAGKLDLEQIDFNLLNLLDEFA 550

Query: 344 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 403
           +  + ++  KG+E    +    P  L GDPGR RQI+ NL  N++KFT  G + V V   
Sbjct: 551 TTLAWRAHQKGLEFICAVEPDTPVHLRGDPGRLRQILNNLGSNAVKFTHSGEVVVRV--- 607

Query: 404 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 463
                                      RC                    S+ D + L  +
Sbjct: 608 ---------------------------RC------------------LHSAQDQVVLQCA 622

Query: 464 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 523
           + DTG GI  +  + +F  F Q+  S +R +GGTG+GL+I K L   M GEIG  S    
Sbjct: 623 ITDTGIGIAQQDLALLFERFAQLDASTTRQYGGTGLGLAICKRLTSLMHGEIGVESKAGQ 682

Query: 524 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNS-----VSSEFQGMKALVVDPRPIRAKVSR 578
           GSTF FT                 + +QP++     V ++ QG++ LVVD  P   ++  
Sbjct: 683 GSTFWFTVTL--------------LPSQPSAIPDLPVHTDLQGVRILVVDDHPTNCEILM 728

Query: 579 YHIQRLGIQVEVVSDQLQC---LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 635
             +   G++     D +Q    L + A+      + L++            + + +  +L
Sbjct: 729 ALLHSWGMRPCEARDGMQALVMLREAATTPDPFQVALID----------LAMPIMDGEQL 778

Query: 636 GCGFQSKLFLLA------NSISSSRANTSTDGVSIPSVIMKPLR--------SSMLAASL 681
           G   QS   L A       S++              + + KP+R         ++L    
Sbjct: 779 GQMIQSDELLAALRCVIMPSLTVPGDLKRYAASGFHAYLPKPVRQQDLHNVLCNVLDEHT 838

Query: 682 QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVER 741
           ++A  +  + + R        L      R +L V+D+ VN +VA   L+R G +    E 
Sbjct: 839 RQAETMVTRHSSRERMYAEQPLFAQWQARILL-VEDDPVNQEVALGALQRLGLSADLAEN 897

Query: 742 GKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS 801
           G++A + L     +D  FMD+QMP +DGF AT+ +R                     +  
Sbjct: 898 GEQALQALAMA-TYDLVFMDVQMPVLDGFAATRKLRSQA-----------------RSAL 939

Query: 802 NFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851
           N  VPI+AMTA+ +Q   E+CL  GM+ Y+ KP   + L   + R+ P I
Sbjct: 940 NVQVPIIAMTANAMQGDREKCLACGMNDYLPKPLSRDALEAAIKRWLPDI 989


>gi|269101851|ref|ZP_06154548.1| BarA sensory histidine kinase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161749|gb|EEZ40245.1| BarA sensory histidine kinase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 921

 Score =  250 bits (638), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 187/613 (30%), Positives = 292/613 (47%), Gaps = 116/613 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGVLG    ++ T L+ +QQDY+ T + S   L+
Sbjct: 280 KKRAQEAARVKSEFLANMSHELRTPLNGVLGFTRQMLKTRLNPSQQDYLLTIEKSANNLL 339

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+E+GKL LE + F+    LD+V+ L +  + +KG+EL + + DR+P +L
Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFAESLDEVMRLLAPTAHEKGLELTLKVDDRIPPSL 399

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGD  R +Q++TNL+GN++KFTE+G+I VTV              EL S K         
Sbjct: 400 IGDALRIQQVLTNLIGNAVKFTERGNIDVTV--------------ELKSDK--------- 436

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                       + +G            I L   V DTG GI    Q+++F  F Q   S
Sbjct: 437 ------------DDEG------------IELQFMVRDTGIGISERQQAQLFQAFSQADAS 472

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR +GGTG+GL I++ LV +M GE+   S  + GSTF FT       + ++   SQ ++
Sbjct: 473 ISRRYGGTGLGLVITQKLVSQMGGEVSLTSRLHQGSTFWFTVRL----TKTDLPVSQLID 528

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
                 +S   G K L+++P    A V +  +  +G+ V   S                 
Sbjct: 529 ------TSSLSGKKVLLIEPNMQAASVIQQRLINVGVHVTYRS----------------- 565

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV-- 667
             ++ ++V   D +        L  L  G Q  +  L + +  +   T    V +P+   
Sbjct: 566 --VMPEDVERHDYT--------LLCLSPGEQPPIATLIDQVFKAEQMTDNVIVCLPTTEL 615

Query: 668 -IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--------KILIVDDN 718
            + + L ++ ++A L + +       +   +   M     LL           ++ VDDN
Sbjct: 616 ALSERLVNAGVSACLGKPLSQRRLFEVMCGDNEQMEPEQPLLPEPASPIQPLTVMAVDDN 675

Query: 719 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             NLK+ +A L      V+    G+KA E       FD  FMDIQMPEMDG  A + I +
Sbjct: 676 TANLKLISALLCERVETVITATGGRKAVE-YAKQKAFDLIFMDIQMPEMDGVTACQQIHD 734

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
            E N                       P++A+TA  +    E  + +GMD Y++KP E  
Sbjct: 735 TELNRTT--------------------PVIAVTAHAMAGERERLINAGMDDYLTKPIEEH 774

Query: 839 QLYREVSRFFPPI 851
            L + + R+  PI
Sbjct: 775 ILQQVLGRWIAPI 787


>gi|420374930|ref|ZP_14874855.1| signal transduction histidine-protein kinase BarA [Shigella
           flexneri 1235-66]
 gi|391315046|gb|EIQ72580.1| signal transduction histidine-protein kinase BarA [Shigella
           flexneri 1235-66]
          Length = 888

 Score =  250 bits (638), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 186/605 (30%), Positives = 293/605 (48%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 253 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 312

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L +  S DKG+EL + I + VP+ +
Sbjct: 313 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 372

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 373 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 429

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 430 DQSRLFQAFR---------------------------------------------QADAS 444

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 445 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HISLDLN 491

Query: 550 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +S         G +   V+P    A+ +      L I  E   + +   S  A  
Sbjct: 492 --PNVISDRSTTRCLAGKRLAYVEPNATAAQCT------LDILSETPLEVIYSPSFSALP 543

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
           ++  +++L+   V    T    L + + R       +   LLA    +            
Sbjct: 544 AEHYDILLLGVPV----TFHEPLTMQHERLASAAAMTDFLLLALPCHAQINAEKLKQGGA 599

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + N+G     +LP  S     +   ++ VDDN  NLK+
Sbjct: 600 AACLLKPLTSTRLLPALTEYCHL-NQG--AELQLPDES----KIAMTVMAVDDNPANLKL 652

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G++A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 653 IGALLEDKVQHVELCDSGQQAMD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 708

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E ++L+  +
Sbjct: 709 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEDKLHSLL 751

Query: 845 SRFFP 849
            R+ P
Sbjct: 752 LRYKP 756


>gi|59712689|ref|YP_205465.1| hybrid sensory histidine kinase BarA [Vibrio fischeri ES114]
 gi|59480790|gb|AAW86577.1| hybrid sensory histidine kinase, in two-component regulatory system
           with GacA [Vibrio fischeri ES114]
          Length = 931

 Score =  250 bits (638), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 215/748 (28%), Positives = 340/748 (45%), Gaps = 131/748 (17%)

Query: 129 GYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTL-N 187
           GY+    D+ SL      +L   Q IF  +  +        ++   +  D    +S + +
Sbjct: 155 GYIAIELDLSSL------RLQQYQEIFSALLVLALGLGLSGIFAYRLMQDVTQPISHMVS 208

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVEE 241
             D  R+  +  R + K    L  +   I  + I+    H      I QAT +    +E+
Sbjct: 209 VVDRIRRGHLDVRIENKLHGELDTLKNGINAMAISLSEYHVEMQQSIDQATSDLRETLEQ 268

Query: 242 DYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 298
                +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T L   QQDY+
Sbjct: 269 LEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTSLSENQQDYL 328

Query: 299 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 358
           +T + S   L+++IN++LD +K+E+GKL LE + F+ +  LD+V+SL +  + +KG+E+ 
Sbjct: 329 QTIERSANNLLTIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEIT 388

Query: 359 VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 418
           + I  RVP  LIGDP R +Q++ NL+GN+IKFTEKG+I ++V L                
Sbjct: 389 LKIDQRVPSGLIGDPLRIQQVLNNLVGNAIKFTEKGNIDISVEL---------------- 432

Query: 419 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 478
                                           K  + D ++L   V DTG GI    Q++
Sbjct: 433 --------------------------------KHLTDDYVDLQFVVRDTGIGISERQQAQ 460

Query: 479 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG-NGS 537
           +F  F Q   SISR +GGTG+GL I++ L+ +M GEIG  S  + GSTF FT        
Sbjct: 461 LFQAFSQADASISRRYGGTGLGLVITQKLISQMGGEIGLSSRLHQGSTFWFTIRMNPTDL 520

Query: 538 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV-------EV 590
              NEH+  Q+  +           K L+++P    A + +      G+ V       E+
Sbjct: 521 PMLNEHDITQLERK-----------KLLLIEPNMQSASILQQQFISHGVFVTYRSTLPEI 569

Query: 591 VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      L  ++S SK  ++  +++   +   + ST+ V        G  S    L + +
Sbjct: 570 IEPHDYALISLSSNSK-PSIETIQEMTSQLSANCSTIIV--------GLPSTELALTDEL 620

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM---SLRHLL 707
           +     T    +S P    K L + ++   LQ              ELP +   +     
Sbjct: 621 NQFSHITC---LSKPFAKKKLLDALLVEKDLQPV-----------PELPDLMAHASEEQK 666

Query: 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
           L  K++ VDDN  NLK+ +A L      V+  + G  A +     H FD   MDIQMP+M
Sbjct: 667 LPIKVMAVDDNPANLKLISALLSEQVETVITCDNGLDAVQQATEQH-FDIILMDIQMPKM 725

Query: 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
           DG  A K IR                    +   N   P++A+TA  ++   E  +  GM
Sbjct: 726 DGVMACKEIR--------------------KTALNAQTPVVAVTAHAMEGERERLISEGM 765

Query: 828 DGYVSKPFEAEQLYREVSRFFPPIPDRS 855
           D Y++KP E E + ++V   + P+ D S
Sbjct: 766 DDYLTKPIE-EHVLQQVIIHWSPLTDNS 792


>gi|409203280|ref|ZP_11231483.1| sensor protein [Pseudoalteromonas flavipulchra JG1]
          Length = 1103

 Score =  249 bits (637), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 199/621 (32%), Positives = 293/621 (47%), Gaps = 123/621 (19%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K+ AE    AKS+FLA++SHEIRTPMNGV+GML +L D  L  TQ   V  A  S K+L+
Sbjct: 553  KQAAEQGAQAKSEFLASMSHEIRTPMNGVIGMLSLLEDEHLTQTQLHKVSLAMGSAKSLL 612

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +LIN++LD +K+E+GKLELE++ F++RA+L +++   + ++Q KG+EL + ++      +
Sbjct: 613  NLINDILDFSKIEAGKLELESLDFDVRALLGELIESVALQAQKKGLELILDVTQLEKPLV 672

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GDP R RQII NL+ N+IKFTE+G I +  +         EV+ +L             
Sbjct: 673  QGDPSRIRQIIINLISNAIKFTEQGEIIIRAWFS-------EVDNKL------------- 712

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
             R H                             SVEDTG GIP +   R+F  F QV  S
Sbjct: 713  -RFH----------------------------CSVEDTGIGIPEDKADRLFAKFSQVDAS 743

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+I + L   M G+I   S    GS F F     +G            N
Sbjct: 744  TTRKYGGTGLGLAIVRQLCELMDGDIAVSSRFGHGSQFEFFVTLIHGD-----------N 792

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             Q  +   + QG+K L+VD            ++  G  V   S  +Q LS          
Sbjct: 793  TQFEAAKIDLQGIKILLVDDNLSALTSLESQLRHWGADVSKASSGIQALS---------- 842

Query: 610  MILVEQEVWEKDTSVSTLFVNNL-------RKLGCGFQSKL-FLLANSISSSRANTSTDG 661
              L E E +++D +V  + + ++        +LG   ++ + F     I  ++  T  DG
Sbjct: 843  --LCEAE-YQRDKNVFDIALLDMTLRGMSGEQLGAALKNDMRFKAIKLIMMTQMGTKGDG 899

Query: 662  V-----SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK----- 711
                         KP+ +  L  +L     +   G       P ++  +L L RK     
Sbjct: 900  QFYAERGYSGYFPKPVTTKDLFDALTI---LAEDGKALANAKPLVTSHYLKLVRKANETE 956

Query: 712  --------ILIVDDNNVNLKVAAAGLKRYGAAVVCV-ERGKKATELLMPPH---QFDACF 759
                    IL+V+DN VN  VA + LK+ G   + V E G  A ELL       QF+   
Sbjct: 957  FTWPKPCRILLVEDNKVNQVVALSMLKKLGITHIEVAENGLLAIELLKSHQDECQFELIL 1016

Query: 760  MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
            MD QMPEMDG+  T++IR+              + E+Y+      V ILAMTA+ +    
Sbjct: 1017 MDCQMPEMDGYRTTELIRD------------GAAGESYQG-----VKILAMTANAMSGDR 1059

Query: 820  EECLRSGMDGYVSKPFEAEQL 840
            E+CL +GM+ Y++KP   E L
Sbjct: 1060 EKCLNAGMNDYLTKPISEEPL 1080


>gi|239908302|ref|YP_002955043.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798168|dbj|BAH77157.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1011

 Score =  249 bits (637), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 198/661 (29%), Positives = 317/661 (47%), Gaps = 103/661 (15%)

Query: 205 APWPLLAISTSIGILVIASLVGHIFQATVNRI---AKVEEDYHGMMELKKKAEAADV--- 258
           +PW +  ++    + ++A L   + +A  +R+    +++E       L+K  EAA+    
Sbjct: 315 SPWMMTFVAGGFSLALLAGL-WQLVRANSDRMKLAGRLDEQSRMNDVLQKAKEAAESGSR 373

Query: 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 318
           AKS FLA  SHEIRTPMNG++GM ++L+ T L   Q ++VRT   S   L+++IN++LD 
Sbjct: 374 AKSAFLANTSHEIRTPMNGIIGMCNLLLGTRLSDKQLEFVRTVHYSANTLMAVINDILDF 433

Query: 319 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 378
           +K+++GK  LE + F+LR +L+  L   +   Q KGVEL + +S  +P  L GDP R +Q
Sbjct: 434 SKIDAGKFSLEIIEFDLRRVLNMTLRPLTIACQQKGVELILVVSPHMPVFLRGDPARLQQ 493

Query: 379 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 438
           +I NL+GN+IKFTE+G + V V                                      
Sbjct: 494 VINNLVGNAIKFTERGEVAVCV-------------------------------------- 515

Query: 439 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 498
                      F S S  +  +  SV+DTG G+  + Q  IF PF QV  S++R  GGTG
Sbjct: 516 ----------DFLSESDGVAYIRFSVKDTGIGMSPQQQEIIFKPFEQVDSSLTRRFGGTG 565

Query: 499 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 558
           +GL+IS +L+  M G++   S    GS F F             +        P+  SS 
Sbjct: 566 LGLAISSHLIELMGGQLSVESNLGKGSEFFFEIGLAVAEQAPRAYWV------PD--SSV 617

Query: 559 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI----ASGSKIINMILVE 614
             G+  LVVD       + R  +      VE   D  + L+ +    A G+  I ++L +
Sbjct: 618 LDGLNVLVVDDHATNRAILRELLAGWKALVEEAKDGFEALTILKEHEAQGNP-IRLLLSD 676

Query: 615 QEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI----MK 670
            ++   D          + KL CG     F+L   ISSS+     +G   PS++    +K
Sbjct: 677 LQMPGID---GLALAQRVEKL-CGSHPPAFIL---ISSSQ--IELEGGIAPSIVKDFLLK 727

Query: 671 PLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLLGRKILIVDDNNVNLKVAAAGL 729
           P   S +   +   + +G+   +  +++ S +    L  G  I++ +D+ VN +V +  L
Sbjct: 728 PFDPSHVLDCV--LISLGHAVKMTQFQVESNIETVPLGEGLDIMVAEDSPVNQRVISHVL 785

Query: 730 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789
            + G +   VE G++A   L     F+A  MD+QMP MDG EAT+ IR ++ +  N    
Sbjct: 786 HKMGHSFTIVENGQEAVT-LWEKRNFNAILMDVQMPIMDGIEATRRIRALDTHREN---- 840

Query: 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
                          VPI+A+TA  +Q+  E CL +GM+ Y+SKP +   L  +++++  
Sbjct: 841 --------------PVPIIALTAHAMQSDRERCLDAGMNDYLSKPLDPGMLAEKLAKWAS 886

Query: 850 P 850
           P
Sbjct: 887 P 887


>gi|162456058|ref|YP_001618425.1| two-component hybrid histidine kinase [Sorangium cellulosum So
           ce56]
 gi|161166640|emb|CAN97945.1| two-component hybrid histidine kinase [Sorangium cellulosum So
           ce56]
          Length = 919

 Score =  249 bits (637), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 177/605 (29%), Positives = 296/605 (48%), Gaps = 75/605 (12%)

Query: 262 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKV 321
           +FLA+VSHEIRTPMNG++GM  + + TEL   Q++Y+   + S  AL+S+IN+VLD +K+
Sbjct: 183 EFLASVSHEIRTPMNGIIGMTSLALQTELTQEQREYLEMVKISADALLSIINDVLDFSKI 242

Query: 322 ESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIIT 381
           E+GKLE+E V F+   I+ D +   + ++ +K +ELA  +   VPE L+GDP R RQ++ 
Sbjct: 243 EAGKLEIEPVVFDPSEIIGDAVKTLALRAHEKRLELAYDVGPDVPEALVGDPLRLRQVLV 302

Query: 382 NLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTF 441
           NL+ N++KFT+ G + V      EV     +  E  +S ++                   
Sbjct: 303 NLVSNAVKFTDAGEVVVRA----EVDSRAPLTPEEEASADS------------------- 339

Query: 442 NQDGSTSPFKSSS-ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 500
              G+ S +      D + L VSV DTG GI  E Q  +F  F Q   S +R +GGTG+G
Sbjct: 340 --QGTPSLYAGEVLGDAVVLRVSVIDTGIGIAPEKQRVVFDAFAQADGSTTRKYGGTGLG 397

Query: 501 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 560
           L+I   LV  M G+I   S    GSTF FT       +      S+++      +  +  
Sbjct: 398 LTICARLVEMMGGKIWIESEAGKGSTFHFTLQL---RALEGAARSRRLE-----IPKDLL 449

Query: 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI------------- 607
           G K L+ D      ++    I+  G++   V      ++ ++  S +             
Sbjct: 450 GTKVLIADDNATARRILADTIEGWGMKAVPVDSGAAAIAALSEDSGVWALPWGKPGGNAV 509

Query: 608 -----INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
                  + +V+  + + D       V + RK     + ++ +L +S S+         +
Sbjct: 510 GPSSSFGLAIVDARMPKVD---GFAVVEHCRKREI-LKGRVLMLLSSTSAQADVARCRDL 565

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
            + +++ KP+++S L  ++  A GV  + ++R+ +    +      G ++L+ +DN +N 
Sbjct: 566 GVFAMVTKPVKTSHLQEAVFHAFGVPTRTSLRSADPRRAAPGPRARGLRVLVAEDNAINQ 625

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
           K+    L+R G  V  VE G+ A E +    Q+D   +D++MPEMDG +A +++R  E  
Sbjct: 626 KLMRRWLERQGHHVHIVENGRLAVEKIA-GGQYDVALLDVEMPEMDGLQAARVVRARERR 684

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                                H+P++ +TA  ++   E CLR+G DGYVSKP + E+LY 
Sbjct: 685 EGG------------------HMPLIVVTAYAMKGDRERCLRAGFDGYVSKPVQVEELYD 726

Query: 843 EVSRF 847
            + R 
Sbjct: 727 MIDRL 731



 Score = 45.8 bits (107), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 40/168 (23%)

Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM---------------- 750
           LLG K+LI DDN    ++ A  ++ +G   V V+ G  A   L                 
Sbjct: 448 LLGTKVLIADDNATARRILADTIEGWGMKAVPVDSGAAAIAALSEDSGVWALPWGKPGGN 507

Query: 751 ---PPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPI 807
              P   F    +D +MP++DGF        +EH     I +G V              +
Sbjct: 508 AVGPSSSFGLAIVDARMPKVDGFAV------VEHCRKREILKGRV--------------L 547

Query: 808 LAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIPDRS 855
           + +++   QA    C   G+   V+KP +   L   V   F  +P R+
Sbjct: 548 MLLSSTSAQADVARCRDLGVFAMVTKPVKTSHLQEAVFHAF-GVPTRT 594


>gi|334119354|ref|ZP_08493440.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
 gi|333458142|gb|EGK86761.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
          Length = 2016

 Score =  249 bits (637), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 190/636 (29%), Positives = 294/636 (46%), Gaps = 118/636 (18%)

Query: 245  GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
             + + +++AEAA  AKS+FLA +SHEIRTPMN V+GM  +L+DTEL   Q+D++ T + S
Sbjct: 1316 ALEQTRREAEAASRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELKAQQRDFIETIRNS 1375

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
            G  L+S+IN++LD +K+ESGKLELE    +LR  +++ +   + K+  KG++L   I  +
Sbjct: 1376 GDTLLSIINDILDFSKIESGKLELEMYPLSLRDCIENAIDQLAVKADQKGIDLGYLIYPQ 1435

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
             P+ ++GD  R RQI+ NL+ N IKFTE G   VT+ +   +VDS               
Sbjct: 1436 TPKFILGDVTRLRQILVNLLNNGIKFTETGE--VTISVQASLVDSD-------------- 1479

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                          KT ++ G+ S        L  +  +++DTG GIP     R+F  F 
Sbjct: 1480 --------------KTISEPGNLS------ESLYEIEFAIQDTGIGIPANRLDRLFKSFS 1519

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRM--------KGEIGFVSIP----------NIGST 526
            QV  S +R +GGTG+GL+ISK L   M        +G +G    P           +GST
Sbjct: 1520 QVDASTTRQYGGTGLGLAISKRLSETMNGMMWVESRGHVGGTPSPKWQAGQPHRITMGST 1579

Query: 527  FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
            F FT V    +    E         P  +  E  G + L+VD +P   ++     Q  G+
Sbjct: 1580 FYFTIVAPAVAIELGE---------PIEMVPELSGKRLLIVDDQPTNRQILTLQAQSWGM 1630

Query: 587  QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 646
            Q+      ++ L+ + SG      IL  Q       ++++    + +   C       +L
Sbjct: 1631 QIRAAQSAVEALNWLESGETFDVAILDMQMPQMHGLTLASAIHQHPK---C--HRLPLVL 1685

Query: 647  ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL 706
              S+    A++S       + + KP++ S L   L   +             P+   +HL
Sbjct: 1686 LTSMGYPEASSSALSTHFAAFLSKPIKQSQLYQILIHVLQAQ----------PTKVQQHL 1735

Query: 707  ------------LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
                         L  +IL+ +D+ VN KVA   L+R G        G +  E L     
Sbjct: 1736 PISVEDDMKLAQRLPLRILLAEDHLVNQKVALLLLERLGYRADIAANGLEVLEALH-RQP 1794

Query: 755  FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVP----ILAM 810
            +D   MD+QMPEMDG EA++ I                          +  P    I+AM
Sbjct: 1795 YDLVLMDVQMPEMDGLEASRRI-----------------------CQEWPAPPRPWIIAM 1831

Query: 811  TADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
            TA+ +Q   + CL +GM+ Y+SKP   E L + +S+
Sbjct: 1832 TANAMQGDRQLCLDAGMNDYISKPIRVEALIQALSQ 1867


>gi|422306135|ref|ZP_16393320.1| sensory box protein [Vibrio cholerae CP1035(8)]
 gi|408627199|gb|EKL00016.1| sensory box protein [Vibrio cholerae CP1035(8)]
          Length = 1268

 Score =  249 bits (637), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 186/609 (30%), Positives = 305/609 (50%), Gaps = 97/609 (15%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + + K++AE+A+ AKS+FLA +SHEIRTPMNGVLG+L ++ ++ LD  Q DY+  A ++ 
Sbjct: 523  LAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTLDQRQADYIEKAYSAA 582

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            K+L++L+N++LD +K+E+GKLEL+   F+L  +L D+  +FS  ++ KG+E+   ++  V
Sbjct: 583  KSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVLYDVTADV 642

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI-EVETELSSS-KNTL 423
            PE L+GD  R +Q++ NL+GN+IKFT+KG I +++        S+ E E  LS S K+T 
Sbjct: 643  PEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIR-----SQSLPEGEINLSFSIKDTG 697

Query: 424  SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483
             G  +  +   + GF+                                            
Sbjct: 698  IGITLEQQNALFSGFQ-------------------------------------------- 713

Query: 484  MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 543
             Q   SISR +GGTG+GL+ISK LV  M GEIG  S    GSTF+F  V  N    + + 
Sbjct: 714  -QADSSISRRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGSTFSFNVVVRNAEKRAIQ- 771

Query: 544  NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC---LSQ 600
                 N+Q  + S+E   +  L+VD       + +     LG Q ++ SD  +    + Q
Sbjct: 772  -----NSQTFTRSNE--KLSVLIVDDNDSSRIILQGIAVSLGWQAKIASDAQEASLLVKQ 824

Query: 601  IASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 660
                S   +++ V+   W         F   LR+L     S + ++           + D
Sbjct: 825  AHRDSTRYDVVFVD---WRMPGKDGLTFARELRELHSSVVSLIVMITAHGKELLDEQNND 881

Query: 661  GVS-IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDD 717
                +   ++KP+  +M+  +++R +     G++ +  LP+  L H   L G  +L+V+D
Sbjct: 882  YERYLDGFLIKPVTKNMMLQAVKRVVF----GDL-DLSLPTSPLPHELPLQGISLLLVED 936

Query: 718  NNVNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQMPEMDGFEATKII 776
            N  N  VA+  L++ GA +     G++A E+L      FD   MDIQMP MDG++ T+ I
Sbjct: 937  NLTNQLVASELLQQLGATIKIASSGEEALEMLESTAEHFDMVLMDIQMPGMDGYQTTREI 996

Query: 777  REM-EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
            R++  H                       +PI+A+TA  +      CL +GM  +++KPF
Sbjct: 997  RKLPRHQL---------------------LPIIAITAHAMSDDIAACLAAGMQDHIAKPF 1035

Query: 836  EAEQLYREV 844
            +  +L  ++
Sbjct: 1036 DLNELTTKI 1044


>gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
            BAA-798]
 gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
            BAA-798]
          Length = 1363

 Score =  249 bits (637), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 183/614 (29%), Positives = 295/614 (48%), Gaps = 111/614 (18%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            + +A  A   KS+F+A +SHEIRTP+N ++GM ++L DT L   Q+++V+T Q S ++L+
Sbjct: 834  RDQAIEASRLKSEFVANMSHEIRTPLNAIIGMTELLQDTPLSERQREFVQTIQTSSQSLL 893

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            S+IN++LD +K+E+GK+ LE V F+L ++++    + +G ++ KG+ L  ++   +P TL
Sbjct: 894  SIINDILDFSKIEAGKMVLEEVDFDLVSLVEGTSEMLAGAARGKGISLMTFVDPTIPRTL 953

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            IGDP R RQ++ NL+ N++KFTE+G + + V L     DS EVE  L   ++T  G    
Sbjct: 954  IGDPARLRQVLLNLLSNAVKFTEQGEVLLRV-LPHRAADS-EVEL-LFEVRDTGIGI--- 1007

Query: 430  DRCHSWKGFKTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 488
            D  H  K F+ F Q D ST                                         
Sbjct: 1008 DSAHLGKLFQPFTQADAST----------------------------------------- 1026

Query: 489  SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 548
              +R +GGTG+GL+ISK LV  M G I   S P +GSTF FTA F    +      +QQ+
Sbjct: 1027 --TRRYGGTGLGLTISKTLVELMGGTIWAESQPGVGSTFRFTARF--KVAAMERSPTQQL 1082

Query: 549  NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS--- 605
               P+        +  LVVD +    ++ R +++   ++ E  +D  Q + +        
Sbjct: 1083 VLPPD--------LHVLVVDDQAAHRQILRSYLESWHMRCEEAADGAQAIEKAQREHFDL 1134

Query: 606  KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
             I++++L + + ++            LR+L      KL LL       +   + D     
Sbjct: 1135 AILDLLLPDTDGFD--------LAQQLRRLSPSM--KLVLLTAHHEQGQGERAVDA-GFS 1183

Query: 666  SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG-----------RKILI 714
            + ++KP+R S L       M V    + R    P                     + IL+
Sbjct: 1184 AYLLKPIRQSQL-------MDVLANISARKEPQPQAEQAPSSAAAAAEPPAQGERKPILL 1236

Query: 715  VDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT-ELLMPPHQFDACFMDIQMPEMDGFEAT 773
             +DN VN ++A   L++ G +V  V+ G++A  E+     ++    MD QMPEMDG+EAT
Sbjct: 1237 AEDNPVNRRLATLQLEKLGYSVRTVDNGREAVEEMARRGQEYCLVLMDCQMPEMDGYEAT 1296

Query: 774  KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
            + IR +E     R                   PI+A+TA+ ++   E CL +GMD Y+SK
Sbjct: 1297 RQIRRLETKSGRR------------------TPIIALTANALEGDREACLAAGMDDYLSK 1338

Query: 834  PFEAEQLYREVSRF 847
            P    +L   + R+
Sbjct: 1339 PLTMGKLKAVLDRW 1352


>gi|392557140|ref|ZP_10304277.1| sensor protein [Pseudoalteromonas undina NCIMB 2128]
          Length = 1112

 Score =  249 bits (637), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 184/638 (28%), Positives = 307/638 (48%), Gaps = 103/638 (16%)

Query: 218  ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 277
            ++ I +L+G ++ +      ++E +   +M  K+ AE A +AKS+FLA++SHEIRTPMNG
Sbjct: 568  LIAIGALIGSLYSSE----QRIETEAELVMA-KEAAEQAVIAKSEFLASMSHEIRTPMNG 622

Query: 278  VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337
            VLGML+++  T LD  Q+ +++ AQ+S ++L+ +IN++LD +K+E+GKL++E++ FNL  
Sbjct: 623  VLGMLNIIQATSLDQQQRHHIKLAQSSAESLLGIINDILDFSKIEAGKLDIESIQFNLPQ 682

Query: 338  ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 397
            +L +++  F+ K++    +L +  +      ++ DP R RQI+ NL+ N++KFT+ G + 
Sbjct: 683  LLGEIVESFALKAESNNTQLILDTTHVSTSEIVCDPNRLRQILNNLIANAVKFTQNGQVL 742

Query: 398  VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 457
            VT   +E+ +D+  +E                                            
Sbjct: 743  VTA-TIEKTLDNTTLE-------------------------------------------- 757

Query: 458  INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 517
                 ++ DTG GI  E Q ++F  F Q   S +R +GGTG+GL+I K L   M GE+  
Sbjct: 758  ----CAIIDTGIGISFEKQKQLFDSFTQADASTTRQYGGTGLGLAIVKQLCELMGGEVSV 813

Query: 518  VSIPNIGSTFTF----TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIR 573
             S+PN GSTFTF    T+V         +H                Q  + L+VD   + 
Sbjct: 814  YSLPNEGSTFTFSVNITSVIDQAFDLDCQH---------------IQAKRILIVDNSEMN 858

Query: 574  AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNL- 632
            A +    +   G  V  V D  +  + I +  +         +V   DTS      + L 
Sbjct: 859  ATIIEKQLTLWGADVSAVCDYKEVETYITNNQQ------TPPDVAIIDTSFLEPVAHPLA 912

Query: 633  RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN 692
             KL     +   L+   +S S++N    G +  ++I KPL +  L  +L +   V     
Sbjct: 913  EKLKHFLVNSHILIMAPMSYSKSNLFY-GNNEAALIFKPLTAIGLYDTLVK---VTLAAQ 968

Query: 693  IRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--M 750
             +   LP            +L+V+DN VN  VA A LK+        E G+ A   L   
Sbjct: 969  PKELALPPAINTPKKAKGHVLLVEDNKVNQVVACALLKQAELTFDIAEDGEDALTKLNQA 1028

Query: 751  PPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM 810
              + +    MD QMP MDG++AT  IRE           G   +E      N  +PI+A+
Sbjct: 1029 NANTYQLILMDCQMPIMDGYQATMAIRE-----------GLAGLE------NQTIPIIAL 1071

Query: 811  TADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            TA+ ++   ++CL +GM+ Y+SKP +   ++ ++ ++ 
Sbjct: 1072 TANAMRGDKDKCLNAGMNDYLSKPLDGPAMHAKLQQWL 1109


>gi|440683654|ref|YP_007158449.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
 gi|428680773|gb|AFZ59539.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
          Length = 1342

 Score =  249 bits (637), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 190/615 (30%), Positives = 299/615 (48%), Gaps = 110/615 (17%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++AE+A+ AKSQFLA +SHEIRTPMN V+GM  +L+DT LD  QQD + T ++SG AL+
Sbjct: 658  KRQAESANRAKSQFLAMMSHEIRTPMNAVIGMTGLLLDTNLDSQQQDLITTIRSSGDALL 717

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            S+IN++LD +K+ES +L LEA  F+LR  L++ L L + ++  K +EL   ++ + P T+
Sbjct: 718  SIINDILDFSKIESNQLNLEAQPFSLRNCLEESLDLLASQAATKKIELIYLLTPQTPNTI 777

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            IGD  R RQI  NL+ N++KFT  G + VT         ++ + T       T   +P  
Sbjct: 778  IGDITRLRQIFVNLLSNAVKFTNIGEVIVTA-----TAKALAIVT-------TAPTFP-- 823

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                       L  +  +++DTG GIP E   R+F PF QV  S
Sbjct: 824  ---------------------------LYEIEFAIKDTGIGIPPEKIDRLFQPFSQVDSS 856

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG--------NGSSTSN 541
            ++R +GGTG+GL IS+ L   M G +   S  + GSTF FT            N + +SN
Sbjct: 857  MTRKYGGTGLGLVISQRLSEMMGGRMWVESQIDNGSTFYFTITVPADPLTESINLNKSSN 916

Query: 542  EHNSQQMNNQPNSVSS-EFQGMKA----LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
            + NS+++    N V+  +F  M+A    +VV+   +++    +   R G Q ++      
Sbjct: 917  QLNSKRLLILSNHVAHRQFLTMQAESWEMVVN--AVKSPAEVFSCLRQGEQFDIA----- 969

Query: 597  CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                      I++M   E         + +L +    +    +Q+   L+   ++     
Sbjct: 970  ----------ILDMQFSE---------IDSLALAKKIRQHPNYQTLPLLILKDLNQPEIK 1010

Query: 657  TSTDGVSIPSVIMKPLRSSMLAASL-----QRAMGVGNKGNIRNWELPSMSLRHLLLGRK 711
               + ++  + + KPL+ S L  SL     Q+ +   +  +      P +S     L  +
Sbjct: 1011 HRVNPIAGIAFLNKPLKQSQLYNSLLNLTRQQPIRFSSSDSNVGQTYPDLS----DLAMR 1066

Query: 712  ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
            IL+ +D+ VNLK+    L + G        G +    L     +D   MD+QMP+MDG E
Sbjct: 1067 ILVAEDHPVNLKMIILILSKLGLRADVAGNGLEVLSALQ-RQSYDVILMDVQMPQMDGLE 1125

Query: 772  ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
             T+ IR M H +  + R                  I+AMTA+ +Q   E CL +GMD Y+
Sbjct: 1126 TTQQIR-MWH-WEEQPR------------------IIAMTANAMQGDKEVCLEAGMDEYI 1165

Query: 832  SKPFEAEQLYREVSR 846
            SKP   E L R +++
Sbjct: 1166 SKPIRLEDLVRVLTQ 1180


>gi|167588508|ref|ZP_02380896.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu]
          Length = 1238

 Score =  249 bits (636), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 187/599 (31%), Positives = 279/599 (46%), Gaps = 97/599 (16%)

Query: 260  KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
            KS+FLA +SHEIRTPMNGVLGM ++L  T L   Q+ +V T   SG+ L+++I+++LD +
Sbjct: 562  KSEFLARMSHEIRTPMNGVLGMTELLQRTRLTAKQRSFVDTVYRSGQTLLTIIDDILDFS 621

Query: 320  KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
            K+E+GKL LE + FNL  +LDDV+SL    +  KG+ L     D VPE + GDP R RQI
Sbjct: 622  KIEAGKLMLERIEFNLYQLLDDVVSLLEPTAARKGLALRFRRQDPVPEWVRGDPVRLRQI 681

Query: 380  ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
            +TNL+GN+IKFTE+G + + V                                +S  G  
Sbjct: 682  LTNLVGNAIKFTERGQVELAV-------------------------------AYSDHGLV 710

Query: 440  TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
             F                     ++ D+G GI  +  +++F PF Q   S +R +GGTG+
Sbjct: 711  VF---------------------TIADSGIGIAPDVSAQLFKPFQQADSSTARKYGGTGL 749

Query: 500  GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 559
            GL IS+ L   M G +   S P  GS FT TA        +      + +          
Sbjct: 750  GLVISRQLAEMMGGTLTVESAPGRGSVFTVTARLEPAGGAAGAVEGARRS---------L 800

Query: 560  QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSKIINMILVEQE 616
             G+K L+ D       V   H     ++V   S   D L  L   A+     ++ +V+  
Sbjct: 801  AGLKVLIADDSETDRSVLVEHALEWQLEVATASGGDDALAQLRAAAADGHPFDLAIVDVR 860

Query: 617  VWEKDTSVSTLFVNN---LRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLR 673
            +   D       V +   LR L        F + +SI  ++       + I + + KPL 
Sbjct: 861  MPGMDGISLVRHVRHDPALRGLRI-ITLTAFEMMDSIQVAQE------LGIDARLTKPLH 913

Query: 674  SSMLAASLQRAMGVG-----NKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
             S L A +  AM V      +   + +   P        +  ++L+V+DN VN ++  A 
Sbjct: 914  GSDLYACIASAMRVTPPRLPSSAPLADEAEPDGGPSPGTVSARVLLVEDNAVNQQITLAM 973

Query: 729  LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
            L+  G AV   E G++A E L    +FD   MD QMP MDGFEAT+++R  E        
Sbjct: 974  LEDTGYAVAVAENGRQALERL-ANERFDVVLMDCQMPLMDGFEATELLRRRE-------- 1024

Query: 789  RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                            +P++A+TA+ I    E C+ +GMD Y+SKPF  + L + ++RF
Sbjct: 1025 ---------AETGAPRLPVIALTANAISGDRERCVAAGMDDYLSKPFRRDVLLKLLARF 1074



 Score = 41.2 bits (95), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 28/161 (17%)

Query: 704 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP----HQFDACF 759
           R  L G K+LI DD+  +  V       +   V     G  A   L       H FD   
Sbjct: 797 RRSLAGLKVLIADDSETDRSVLVEHALEWQLEVATASGGDDALAQLRAAAADGHPFDLAI 856

Query: 760 MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
           +D++MP MDG     ++R + H+   R  R  +++ A+E +            D IQ   
Sbjct: 857 VDVRMPGMDGI---SLVRHVRHDPALRGLR-IITLTAFEMM------------DSIQVAQ 900

Query: 820 EECLRSGMDGYVSKPFEAEQLYREVS---RFFPP-IPDRSP 856
           E     G+D  ++KP     LY  ++   R  PP +P  +P
Sbjct: 901 E----LGIDARLTKPLHGSDLYACIASAMRVTPPRLPSSAP 937


>gi|118579340|ref|YP_900590.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502050|gb|ABK98532.1| Hpt sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 977

 Score =  249 bits (636), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 183/603 (30%), Positives = 284/603 (47%), Gaps = 98/603 (16%)

Query: 260 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
           KS+FLA +SHEIRTPMNGVLGM ++L+ T L+  Q+ +  T + SG+AL+++IN++LD +
Sbjct: 294 KSEFLANMSHEIRTPMNGVLGMTELLLGTLLNGKQRQFAETIRNSGEALLAIINDILDFS 353

Query: 320 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
           K+E+GK+ELE + F++  +L D   LF+  +  KG+EL V I   VP  ++GDP R RQ+
Sbjct: 354 KIEAGKIELEKIPFDMHELLCDAAELFASSAHQKGLELLVSIHPDVPRMVVGDPARLRQV 413

Query: 380 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
           + NL  N++KFT++G I ++  + E   D+I                             
Sbjct: 414 VLNLASNAVKFTDQGEIVISADVAESGQDNI----------------------------- 444

Query: 440 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
                            LI  +  V DTG GI  E+  +IF  F Q   S++R +GGTG+
Sbjct: 445 -----------------LIRFL--VRDTGIGISPESLEKIFEGFAQADGSMTRRYGGTGL 485

Query: 500 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 559
           GL+I + L G M G     S P++GS F+FTA F       +   + Q    P+S     
Sbjct: 486 GLTIVRQLAGLMGGTTRVESTPDVGSCFSFTARF-------DLPATLQQAALPSSAHEAL 538

Query: 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK-------IINMIL 612
           +  K LVVD       +    I   G++++  S  L+ L+ + +  +       I++M++
Sbjct: 539 REQKVLVVDDNATNRTILEQIILSWGMRIKTASCALEALASLRNAGQSDPFQLAILDMMM 598

Query: 613 VEQEVWE------KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
              +  E       D S+  L +  L   G         +   +  S+A        I  
Sbjct: 599 PAMDGIELAHAIRTDPSIPPLHMVMLTSSG---------IIGEMERSQA------AGIEY 643

Query: 667 VIMKPLRSSMLAASLQRAMG--VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + KP+RSS L   L    G  +G     +  E    +    +     L+V+DN VN  V
Sbjct: 644 CLTKPVRSSWLYDCLIGLTGTALGRTSQRKEQEQVVATGFTTVSDSSALLVEDNLVNQDV 703

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
               L+  G  V     G +A +LL    +F    MD QMP MDG++ TK +R  E +  
Sbjct: 704 GREMLRFLGYEVTVASNGSEALDLL-ASRRFSIILMDCQMPVMDGYQTTKELRLREKSAP 762

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                        E     H  ++A+TA   +   E C+ +GMD Y++KP+  EQL   +
Sbjct: 763 G------------EGGGTPHQTVIALTAHAGEQDRELCMEAGMDDYLTKPYTLEQLTGIL 810

Query: 845 SRF 847
           SR+
Sbjct: 811 SRW 813


>gi|390449516|ref|ZP_10235121.1| two-component sensor/response regulator hybrid [Nitratireductor
           aquibiodomus RA22]
 gi|389664013|gb|EIM75524.1| two-component sensor/response regulator hybrid [Nitratireductor
           aquibiodomus RA22]
          Length = 764

 Score =  249 bits (636), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 176/601 (29%), Positives = 277/601 (46%), Gaps = 93/601 (15%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           ++  + +AE A  AKS FLATVSHEIRTPMNG++GM  +L DTEL   Q+ YV     S 
Sbjct: 241 LINARVRAEQASRAKSSFLATVSHEIRTPMNGIMGMATLLADTELTPEQRTYVGAVSTSA 300

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            ALV+LI ++LD +K+E+G+LELE  +  +  ++++V+ L + ++  K + L  YI+  V
Sbjct: 301 SALVALIEDLLDYSKIEAGRLELEPQTLAVNELVENVVELLAARAFAKNIGLGCYIAPDV 360

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
           PET+  DPGR RQ++ NL+GN++KFT++G + V V   E+                  +G
Sbjct: 361 PETITADPGRLRQVLINLLGNALKFTDEGGVTVAVSRAEK------------------NG 402

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
            P                                L ++V D+G G+  +  +RIF  F Q
Sbjct: 403 APA-------------------------------LRIAVSDSGPGLEKDDINRIFKDFEQ 431

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
           V  S +R HGG G+GL+I+K +V  M G I   S P  GS F      G  +        
Sbjct: 432 VDGSSTRRHGGAGLGLAITKRIVDAMNGSISVASTPGEGSEFAVLLPLGAEA-------- 483

Query: 546 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
               ++   V    + + A+++ P    A+     ++  G +  + +             
Sbjct: 484 ----DEAGRVEPVLEEVNAVILSPFAQEAETIAMTVRVHGGRAAIAATAEDAARLAEESG 539

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
           +  N +LV+  +   D +     +  L  LG G    L L+  S           G    
Sbjct: 540 RPFNTVLVDASLESDDGA----LITRLHALGVGGDRALTLITPSERGRLPAFRASGYG-- 593

Query: 666 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK-----ILIVDDNNV 720
           + + +P+R   L   L++ +G  ++      E    +     +GR+     IL+ +DN +
Sbjct: 594 AFLARPVRGRTL---LRQLLGSKSEATWPAAETHDRTHDAGTMGRRAGGLNILVAEDNEI 650

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQMPEMDGFEATKIIREM 779
           N  +A A L R G  V  V  G++A E +  P  +FDA  MD+ MP MDG +A   IR  
Sbjct: 651 NAMLARAALSRAGHRVTLVSNGREAVEAVSAPGTRFDAVLMDLHMPVMDGLDAINAIRRH 710

Query: 780 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
           E                 E      +PIL +TAD  + T    L  G +G+V+KP + ++
Sbjct: 711 E-----------------EETGLAPLPILVLTADGQEETRSGVLAHGANGFVTKPLDPDE 753

Query: 840 L 840
           L
Sbjct: 754 L 754


>gi|50122492|ref|YP_051659.1| hybrid sensory histidine kinase BarA [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613018|emb|CAG76469.1| two-component sensor kinase and response regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 933

 Score =  249 bits (635), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 191/606 (31%), Positives = 288/606 (47%), Gaps = 106/606 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T L+ TQ DY+ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLNTTQTDYLLTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F+L + LDDV+ L +  + +KG+EL + I + VPE  
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +QIITNL+GN+IKFTE+G+I + V    +    +++E                
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLE---------------- 446

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                           V + DTG GI    QS++F  F Q   S
Sbjct: 447 --------------------------------VQIRDTGIGIAELQQSQLFQAFRQADTS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S  N GSTF F              N   M 
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITL--------PLNPHAMP 526

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
            +P    +  QG     V+  PI A+ +   + +  + V           Q+  G    +
Sbjct: 527 TEP--AYTMLQGKHLAYVEYHPIAAQATLDILSQTPLMVSYSP----TFEQLPEGD--FD 578

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA-NTSTDGVSIPSVI 668
           ++L+   V  ++  +   +   LR + C     + L   S++   A    T GV   + +
Sbjct: 579 ILLLGIPVQYRNMLLD--YTPRLRDI-CRRAPCVILALPSLAQMDAEQLKTFGVH--ACL 633

Query: 669 MKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK-------ILIVDDNNVN 721
            KPL +S L   LQ      +    +   LP  +  H  + R        ++ VDDN  N
Sbjct: 634 SKPLAASRLLPLLQ------DSTLFQLSFLPDATTSHQSVVRHPARLPLSVMAVDDNPAN 687

Query: 722 LKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           LK+    L+     ++  E G  A ++  M  HQ D   MDIQMP MDG  A+++IR++ 
Sbjct: 688 LKLIGTLLEEQVDTIILCESGTDAISQAKM--HQIDIILMDIQMPGMDGICASELIRQIP 745

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
           H+                       PI+A+TA  +    E  LRSGMD Y++KP + + L
Sbjct: 746 HHATT--------------------PIIAVTAQTMTGEREHLLRSGMDDYLAKPIDEQML 785

Query: 841 YREVSR 846
              ++R
Sbjct: 786 KSVLTR 791


>gi|390448937|ref|ZP_10234551.1| hybrid sensory histidine kinase [Nitratireductor aquibiodomus RA22]
 gi|389665252|gb|EIM76726.1| hybrid sensory histidine kinase [Nitratireductor aquibiodomus RA22]
          Length = 945

 Score =  249 bits (635), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 197/670 (29%), Positives = 310/670 (46%), Gaps = 116/670 (17%)

Query: 207 WPLLAISTSIGILVIASLVG--HIFQATVNRIAKVEEDYHG----MMELKKKAEAADVAK 260
           W L  ++   G +V ASL+    IF+  + RI+K  ++ H     +   K KA++AD  K
Sbjct: 217 WGLFGVA---GAMVGASLLLALRIFEPMIRRISKAHQELHSANISLAAEKIKAQSADRTK 273

Query: 261 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 320
           S+FLA +SHEIRTPMNGV+GM ++L  T LD  Q  +V     SG AL+++IN++LD +K
Sbjct: 274 SEFLANMSHEIRTPMNGVMGMAELLARTNLDQRQAMFVDVIVKSGTALLTIINDILDFSK 333

Query: 321 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 380
           +++G+L+L+   F +R  ++DV +L S +  +K +EL V +   +  + IGD GRFRQI 
Sbjct: 334 IDAGQLKLDEAPFRIREAIEDVAALVSSRVAEKNLELIVRVDPELSASFIGDVGRFRQIA 393

Query: 381 TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 440
           TNL+GN++KFTE+GH+ + V                       SG               
Sbjct: 394 TNLVGNAVKFTERGHVLIDV-----------------------SG--------------- 415

Query: 441 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 500
               G+T+           + V VEDTG GIP +    +F  F QV  S +R H GTG+G
Sbjct: 416 -KTKGNTA----------QVTVRVEDTGIGIPPDKLEAVFDKFAQVDSSSTRRHEGTGLG 464

Query: 501 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 560
           L+I+  L   M G I   S    GSTF FT  F   ++ + +  +      P  VS    
Sbjct: 465 LAIAVKLAELMGGSIEATSEVGKGSTFVFTLPFAIDTANAIQATA------PVDVS---- 514

Query: 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI---INMILVEQEV 617
           G +  V+D   I  ++    +   G +          L+ +   +++   ++ ++++ ++
Sbjct: 515 GARVFVIDDNAINREILLEQLNSWGFECAAAESGAVGLAFLQRSAQLDARVDCVILDYQM 574

Query: 618 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 677
            + + +     V    K          +L  S+  +          I + + KP RSSML
Sbjct: 575 PDMNGA----DVAKKIKADPALAGIPLVLLTSVDQTDTARLVSECGIAAHLNKPTRSSML 630

Query: 678 AASLQRAMGVGNK------GNIRNWELP-----SMSLRHLLLGRK-------ILIVDDNN 719
             +L   M V         G+      P     S  L   L G +       +L+ +DN 
Sbjct: 631 LETLVSVMQVSRALPDQPLGDAHAPAKPIQIHASTPLERGLSGSRGANGPLDVLVAEDNE 690

Query: 720 VNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATKIIR 777
           VN  V +  L   G        GK A E+L  + P       MD+ MPEM+GFEAT  IR
Sbjct: 691 VNQLVFSQILDGMGLKYRIAGNGKTAVEMLRTLKPR---LVLMDVSMPEMNGFEATAAIR 747

Query: 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
           E                  +E  S  + PI+ +TA  ++   E+CL +GMD Y+ KP   
Sbjct: 748 E------------------HEAASGTYTPIIGITAHALRGDREKCLGAGMDDYLPKPISP 789

Query: 838 EQLYREVSRF 847
           ++L  +++ +
Sbjct: 790 QKLAEKITHW 799


>gi|197336284|ref|YP_002156881.1| hybrid sensory histidine kinase BarA [Vibrio fischeri MJ11]
 gi|197317774|gb|ACH67221.1| signal transduction histidine-protein kinase BarA [Vibrio fischeri
           MJ11]
          Length = 931

 Score =  249 bits (635), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 203/686 (29%), Positives = 319/686 (46%), Gaps = 124/686 (18%)

Query: 190 DPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVEEDY 243
           D  R+  +  R + K    L  +   I  + I+    H      I QAT +    +E+  
Sbjct: 211 DRIRRGHLDVRIENKLHGELDTLKNGINAMAISLSEYHVEMQQSIDQATSDLRETLEQLE 270

Query: 244 HGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRT 300
              +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T L   QQDY++T
Sbjct: 271 IQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTSLSENQQDYLQT 330

Query: 301 AQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVY 360
            + S   L+++IN++LD +K+E+GKL LE + F+ +  LD+V+SL +  + +KG+E+ + 
Sbjct: 331 IERSANNLLTIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLK 390

Query: 361 ISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSK 420
           I  RVP  LIGDP R +Q++ NL+GN+IKFTEKG+I ++V L                  
Sbjct: 391 IDQRVPSGLIGDPLRIQQVLNNLVGNAIKFTEKGNIDISVEL------------------ 432

Query: 421 NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 480
                                         K  + D ++L   V DTG GI    Q+++F
Sbjct: 433 ------------------------------KHLADDYVDLQFVVRDTGIGISERQQAQLF 462

Query: 481 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA-VFGNGSST 539
             F Q   SISR +GGTG+GL I++ L+ +M GEIG  S  + GSTF FT  +       
Sbjct: 463 QAFSQADASISRRYGGTGLGLVITQKLISQMGGEIGLSSRLHQGSTFWFTIRMHPTDLPM 522

Query: 540 SNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV-------EVVS 592
            N+H+  Q+  +           K L+++P    A + +      G+ V       E++ 
Sbjct: 523 LNDHDITQLEKK-----------KLLLIEPNMQSASILQQQFISHGVFVTYRSTLPEIIE 571

Query: 593 DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 652
                L  ++S SK  ++  +++   +   + ST+ V        G  S    L + ++ 
Sbjct: 572 PHDYALISLSSNSK-PSIETIQEMTSQLSANCSTIIV--------GLPSTELALTDELNQ 622

Query: 653 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM---SLRHLLLG 709
               T    +S P    K L + ++   LQ              ELP +   +     L 
Sbjct: 623 FSHITC---LSKPFAKKKLLDALLVEKDLQPV-----------PELPDLMAHASEEQKLP 668

Query: 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
            K++ VDDN  NLK+ +A L      V+  + G  A +     H FD   MDIQMP+MDG
Sbjct: 669 IKVMAVDDNPANLKLISALLSEQVETVITCDNGLDAVQQATEQH-FDIILMDIQMPKMDG 727

Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
             A K IR                    +   N   P++A+TA  ++   E  +  GMD 
Sbjct: 728 VMACKEIR--------------------KTALNAQTPVVAVTAHAMEGERERLISEGMDD 767

Query: 830 YVSKPFEAEQLYREVSRFFPPIPDRS 855
           Y++KP E E + ++V   + P+ D S
Sbjct: 768 YLTKPIE-EHVLQQVIIHWSPLTDNS 792


>gi|406955644|gb|EKD84036.1| hypothetical protein ACD_39C00287G0002 [uncultured bacterium]
          Length = 1217

 Score =  249 bits (635), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 184/617 (29%), Positives = 293/617 (47%), Gaps = 105/617 (17%)

Query: 251  KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 310
            +K E A   K  FLA +SHEIRTPMN V+GM  + + TEL   Q+DY+   Q +G +L+ 
Sbjct: 485  EKLEEATKVKGVFLANMSHEIRTPMNAVIGMSHLCLKTELSEKQKDYIEKIQQAGFSLLE 544

Query: 311  LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 370
            +IN +LD +K+E G +++ +  F++   LD     F+ K+++KG+E    I + +P  L 
Sbjct: 545  IINNILDFSKLEDGNMKVRSSLFHMTEFLDKATVEFTIKARNKGIEFVTQIDENLPLCLC 604

Query: 371  GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 430
            GD  R  QI+  L+ N++KFTEKG I + +  +E   + +++  E               
Sbjct: 605  GDQARIGQILHQLLANAVKFTEKGQISLRIRALERKEEQVKLRFE--------------- 649

Query: 431  RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 490
                                             + DTG G+     S++F PF QV  S 
Sbjct: 650  ---------------------------------IHDTGIGMTSTQLSQLFQPFRQVDESS 676

Query: 491  SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 550
            +R   GTGIGL++SK LV  + G+I   S    GSTF+F    G G+ +           
Sbjct: 677  TRQFSGTGIGLALSKRLVEMLGGQIHAESQQGHGSTFSFELWCGLGTMSI---------- 726

Query: 551  QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--ASGSKII 608
             P +++   +G   LVVD  P+  ++ +  ++ +G++VEV S  ++ L+ I  A  S   
Sbjct: 727  -PQTMNFSIEGFHVLVVDDNPVDRQILKEQLESVGMRVEVCSSGIESLAAISKADTSDPF 785

Query: 609  NMILVEQEVWEKD-----TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
              + ++  +   D       +  L + N R       S + + A  I   R      GV 
Sbjct: 786  KAVFMDWRLPGIDGIDIIRQIENLAIRNTRP------SVILVTAFEIEDVRDQAELAGVK 839

Query: 664  IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNVN 721
              + + KP+  S L  SL +A G      I    LP+MS      L G ++L+V+DN++N
Sbjct: 840  --AFLPKPVTPSNLWNSLGKAFG----SPIAKPSLPTMSQETSMDLRGMRVLLVEDNDLN 893

Query: 722  LKVAAAGLKRYGAAVVCVERGKKATELLMP---PHQFDACFMDIQMPEMDGFEATKIIRE 778
             ++A   L+  G AV   + GK A ELL     P  +D   MDIQMP MDG +AT  +R+
Sbjct: 894  QQIAKELLQSVGVAVTLADNGKTAIELLKSAPDPLPYDLVLMDIQMPIMDGHQATLELRK 953

Query: 779  MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
             E  F +                   +PI+A+TA  ++   + C   GM+G++SKP E +
Sbjct: 954  -EARFKD-------------------LPIIALTAHAMEDEKQVCYDEGMNGHISKPIEPQ 993

Query: 839  QLYREVSRFFP--PIPD 853
             L+R ++ +    P P+
Sbjct: 994  LLFRLLANWTKRRPAPE 1010


>gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 833

 Score =  249 bits (635), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 189/639 (29%), Positives = 298/639 (46%), Gaps = 100/639 (15%)

Query: 234 NRIAKVEEDYHG----------MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 283
            R A+VE  Y            +++ K+ AEAA  AK  FLA +SHEIRTPMNG++GM D
Sbjct: 139 GRWARVEGTYRDVTERKLREIELLQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTD 198

Query: 284 MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 343
           +L+D+ +   Q++Y++T ++S +AL+++IN++LD +++E+G+L +E + F+L +++ +  
Sbjct: 199 LLLDSTIAGEQREYLQTVKSSAEALLTIINDILDFSRIEAGRLSVEQIDFSLHSVVSETC 258

Query: 344 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 403
              + ++  KG+EL   ++  VP  L GDP R RQI+ NL+GN+IKFTE G + V V  V
Sbjct: 259 RALALRASQKGLELYYDVAPDVPSVLRGDPTRLRQILVNLIGNAIKFTEHGEVEVRVRCV 318

Query: 404 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 463
           +                                              ++  A  I  +  
Sbjct: 319 Q----------------------------------------------RNGGAASIEFL-- 330

Query: 464 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 523
           V DTG GI  +    IF  F Q   S +R +GGTG+GL+I + L   M G IG  S+P  
Sbjct: 331 VRDTGCGIAPDKLEAIFGAFSQADNSTTRKYGGTGLGLAICRQLTELMGGRIGVDSVPGA 390

Query: 524 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 583
           GS F  T                  +  P  V +   G + LV       A      +Q 
Sbjct: 391 GSRFEVTLPL-----------RAVADPTPLRVGA-LAGTRVLVASANAAFADFLCATLQE 438

Query: 584 LGIQVEVVSDQL---QCLSQIASGSKIINMILVEQEVWEKDT-SVSTLFVNNLRKLGCGF 639
             ++ E     +   Q L++ A GS     +L++ ++ E    +++  F     +     
Sbjct: 439 AALRAEAACSGVAVEQALARAADGSDPFAFLLMDADLPEPGGFALAQRFAAAWPR----- 493

Query: 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR--NWE 697
             ++  +  S S        + + +   + KP  +  L A L+ A G G +       +E
Sbjct: 494 PDRIIPMMASHSQRNDALRCEELGLGYRLAKPFSAEDLLAVLRMAQG-GEREAAEPPPFE 552

Query: 698 LPSMSLRHLLLGR------KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 751
           L  + LR  +         ++L+V+DN VN  VA   L+  G +V     G++A E +  
Sbjct: 553 LAPVELRSTVGMEPPARVLEVLVVEDNPVNQTVAKRMLEHVGHSVTVANNGEEALEAIDN 612

Query: 752 PHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMT 811
            H FD   MD+QMP M G EAT+ IR  E       RR  V    ++      VPI+AMT
Sbjct: 613 RH-FDVVLMDVQMPVMGGIEATQAIRARE------ARRSWVLAGDWKP-----VPIIAMT 660

Query: 812 ADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
           A  ++   E CL++GMD YV+KP   E L+  + R   P
Sbjct: 661 AHAMEGDRERCLQAGMDDYVAKPVRPEALFAAIERVLGP 699


>gi|242280332|ref|YP_002992461.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123226|gb|ACS80922.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 923

 Score =  249 bits (635), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 192/607 (31%), Positives = 291/607 (47%), Gaps = 119/607 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K +AEAA  +KS+F+A VSHEIRTPMN ++GM D+ M+T+L   Q+++++   +SGK L+
Sbjct: 267 KDEAEAASKSKSEFMANVSHEIRTPMNAIIGMADLTMETDLSSKQREFIKIIISSGKVLL 326

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            LIN++LD +K+E+GKL LE V+FNL  ++ D+  LF  +      EL + I   VP+ +
Sbjct: 327 RLINDILDFSKIEAGKLSLEEVNFNLHQLIHDISDLFVEQMVASQTELVIDIRPGVPQRI 386

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE-VETELS-SSKNTLSGYP 427
           IGDP R RQ++ N+  N+ KFT KG I +TV       D I   +TE+  + K+T  G P
Sbjct: 387 IGDPLRLRQVLVNITANAFKFTSKGEIIITVS-----ADQINATKTEIVFAIKDTGIGIP 441

Query: 428 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487
              + H ++ FK    DGST                                        
Sbjct: 442 EEVQPHLFEAFK--QADGST---------------------------------------- 459

Query: 488 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTS--NEHNS 545
              +R +GGTG+GLSISK +V  M G I F S P  GSTF FT        TS       
Sbjct: 460 ---TRKYGGTGLGLSISKRIVNLMGGNIWFRSRPEDGSTFFFTITPNVAVETSLIEFEIP 516

Query: 546 QQMNNQPNSVSSEFQGMKALVVDPR-PIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
           Q++ N+P            LVVD    +R+ + RY +++ G Q           + +AS 
Sbjct: 517 QELKNKP-----------VLVVDDNFAVRSVLVRY-LKQFGFQP----------TSVASA 554

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVN-------------NLRKLGCGFQSKLFLLANSIS 651
            + I +I        KD     L ++              +RK     +  + ++  +  
Sbjct: 555 EEAIKII-----EDRKDDQFKLLIIDLKLPGMNGDEASIEIRKTYSKEELPILMITATEL 609

Query: 652 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK 711
           +S A +      I  +I KPL+ + L  S+    G        ++E PS  ++      +
Sbjct: 610 NS-ALSKAQNAQINRMISKPLKQATLFNSIMETFGYDVPKEY-SYE-PSKPIKDEFKSFR 666

Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
           +L+V+DN +N +VA   L+  G  +     G +A  ++     +D   MDIQMPEMDG+E
Sbjct: 667 LLLVEDNPINQQVAEQILEPTGIEISSAPNGAEAVRMVQEAG-YDIVLMDIQMPEMDGYE 725

Query: 772 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
           AT IIR       N ++  E             +PI+AMTA  ++   E+C+ SGMD Y+
Sbjct: 726 ATTIIR-------NDLKMKE-------------LPIIAMTAHAMRGDKEKCIASGMDDYI 765

Query: 832 SKPFEAE 838
            KP + E
Sbjct: 766 PKPIDKE 772



 Score = 45.1 bits (105), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 22/144 (15%)

Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQM 764
           L  + +L+VDDN     V    LK++G     V   ++A +++      QF    +D+++
Sbjct: 519 LKNKPVLVVDDNFAVRSVLVRYLKQFGFQPTSVASAEEAIKIIEDRKDDQFKLLIIDLKL 578

Query: 765 PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 824
           P M+G EA                    SIE  +  S   +PIL +TA  + +   +   
Sbjct: 579 PGMNGDEA--------------------SIEIRKTYSKEELPILMITATELNSALSKAQN 618

Query: 825 SGMDGYVSKPFEAEQLYREVSRFF 848
           + ++  +SKP +   L+  +   F
Sbjct: 619 AQINRMISKPLKQATLFNSIMETF 642


>gi|414169325|ref|ZP_11425162.1| hypothetical protein HMPREF9696_03017 [Afipia clevelandensis ATCC
           49720]
 gi|410886084|gb|EKS33897.1| hypothetical protein HMPREF9696_03017 [Afipia clevelandensis ATCC
           49720]
          Length = 757

 Score =  249 bits (635), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 178/610 (29%), Positives = 283/610 (46%), Gaps = 106/610 (17%)

Query: 245 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            + E +  A AA+ AKS+FLA  SHEIRTP+NG++GM ++L+DT L   Q+ Y +  + S
Sbjct: 217 ALAEARDLANAANRAKSKFLAMASHEIRTPLNGIIGMSNLLLDTSLTAEQKTYAKAVKTS 276

Query: 305 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
           G AL++LI+E+LD +++E+GK++LE   F L A+++D+  L + ++Q + +E+A Y+ +R
Sbjct: 277 GDALMALIDELLDFSRIEAGKIDLEQRPFALAAMIEDITELLAPRAQARNLEIASYVDER 336

Query: 365 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
           +P  ++GD  R RQ++ NL GN+IKFT+ G +     +VE  +                 
Sbjct: 337 LPRQVLGDAARLRQVLLNLAGNAIKFTQSGGV---ALIVEPGI----------------- 376

Query: 425 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                     W G  +F                      V DTG GI  EAQ RIF  F 
Sbjct: 377 ----------WPGEISF---------------------IVRDTGIGIAPEAQQRIFREFE 405

Query: 485 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
           Q     +R +GGTG+GLSIS  +V RM G I   S    G+TF F+      ++      
Sbjct: 406 QASEGTARNYGGTGLGLSISDRIVRRMGGHIALESTEGHGATFAFSIPLAAANT------ 459

Query: 545 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
               N+ P  ++ +  G   ++V P+ I A +    ++R G Q    +D    ++     
Sbjct: 460 ----NDAPAFIAPDLTGKSIMLVAPQSIEASLIARRLERWGAQTCTAAD--ISIAHALLP 513

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
            +  + +LV  +    DT         +R      +  +F  A      R  T     S 
Sbjct: 514 ERPWHAVLV--DCGSADTPWRDFGNAAVRH--SAHRIAMFTPAQ----RRDITPAMAASY 565

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKG---NIRNWELPSMSLRHLLL-------GRKILI 714
              ++KPLR    AASL   + V +      +   + P+  + H  +          IL+
Sbjct: 566 TGYLVKPLR----AASLAERLSVSSAAMLPELSGEDAPATDMAHSTMPPETASRALSILV 621

Query: 715 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ----FDACFMDIQMPEMDGF 770
            +DN +N  +  + L + G A V    G++A E  +        +D   MDIQMP++DG 
Sbjct: 622 AEDNEINALLIRSLLIKLGHAPVITTDGEQALESWIAADSAGTPYDVVLMDIQMPKLDGI 681

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            ATK IR  E   + R                    ILA+TA+ +      C  +GMDG+
Sbjct: 682 SATKRIRAHEAGRSPR-----------------RTTILALTANTLVDDRYACFEAGMDGF 724

Query: 831 VSKPFEAEQL 840
           + KP + ++L
Sbjct: 725 LIKPLDRDKL 734


>gi|390952192|ref|YP_006415951.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
 gi|390428761|gb|AFL75826.1| PAS domain S-box [Thiocystis violascens DSM 198]
          Length = 1158

 Score =  248 bits (634), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 180/601 (29%), Positives = 291/601 (48%), Gaps = 79/601 (13%)

Query: 253 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
           A AA+ AKS FLA +SHEIRTP+N V+G+ D+L+ T LD  Q+DY+   + S +AL+++I
Sbjct: 409 ARAANEAKSGFLANMSHEIRTPLNAVMGLTDLLLRTRLDARQRDYLAKVKISARALLAVI 468

Query: 313 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
           N++LD +K+E+G+LELE  +F+L  +L ++  +F+ ++ ++ +EL V  +D VP  L+GD
Sbjct: 469 NDILDFSKIEAGRLELEHAAFSLDEVLANLTEMFAYRAHERDIELIVSAADSVPRALVGD 528

Query: 373 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 432
           P R  QI+ NL GN+IKFTE+G + VTV  +E                      P AD  
Sbjct: 529 PTRLGQILINLTGNAIKFTERGEVAVTVTRIEP---------------------PSAD-- 565

Query: 433 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492
                           P      D + L  +V DTG GIP      IF  F Q   SI+R
Sbjct: 566 ----------------PID----DQVTLCFTVRDTGPGIPENRLEAIFQSFSQADGSITR 605

Query: 493 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 552
            HGGTG+GL+I++ L   M G I   S    GS F  T V      T  +H    ++   
Sbjct: 606 LHGGTGLGLAIARQLAELMGGGIRVESQVGKGSCFRATVVLSRQLETDEQHPVTPID--- 662

Query: 553 NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMIL 612
                  +G++ LVV+       +    IQ   +    V+   + L ++++  +I +++L
Sbjct: 663 ------LRGLRVLVVEDNATSRDILISQIQSFQMAATAVASGEEALERLSAPDQIFDLVL 716

Query: 613 VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL 672
           ++ ++   +   +T  +    KL    ++ +  + +  +        +   + + + KP+
Sbjct: 717 MDWKMPGLNGLETTRRIRADLKLD---KTPVICMISGYAREDLMRPAERAVLDAFLHKPV 773

Query: 673 RSSMLAASLQRAMG---VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 729
             S L  ++    G       G++      ++       G+++L+V+D  +N  VA   L
Sbjct: 774 NQSFLFDTIMGLFGHQEAAIAGDLMRPTADTLDTPPDFTGQRVLLVEDIEINRLVAMEWL 833

Query: 730 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789
              G  V   E G +A E L  P +  A  MD+QMP MDG EAT+ IR            
Sbjct: 834 ASVGLEVDIAENGAEAIERL-DPARHAAVLMDLQMPVMDGLEATRRIRARPE-------- 884

Query: 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
                          VPI+AMTA  ++   E CL +GM+ YV+KP +  +L+  ++R+  
Sbjct: 885 ------------QAAVPIIAMTAHALKGDLERCLAAGMNDYVAKPVDPARLFAALARWIK 932

Query: 850 P 850
           P
Sbjct: 933 P 933


>gi|408417737|ref|YP_006759151.1| sensory box histidine kinase/response regulator protein
           [Desulfobacula toluolica Tol2]
 gi|405104950|emb|CCK78447.1| sensory box histidine kinase/response regulator protein
           [Desulfobacula toluolica Tol2]
          Length = 971

 Score =  248 bits (634), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 191/629 (30%), Positives = 295/629 (46%), Gaps = 91/629 (14%)

Query: 236 IAKVEEDYHGMME----LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 291
           +++ ++D   M++     K++AE     KSQFLA +SHEIRTPMNGVLGM ++L+ T L 
Sbjct: 276 LSQAKKDLEAMVKNLEKAKEQAEEVSRIKSQFLANMSHEIRTPMNGVLGMTELLLTTRLS 335

Query: 292 VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 351
             Q  Y  T Q SG++L+ +IN++LD +K+E+GKLELE + FNL  +++DV  L + ++ 
Sbjct: 336 ENQHRYAETIQNSGESLLEIINDILDFSKIEAGKLELEMIDFNLEQLIEDVSQLLASQAH 395

Query: 352 DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 411
            K +EL V I       L GDP R RQ++TNL+GN+IKFTEKG I +      +  D+  
Sbjct: 396 SKRLELVVAIKRGTRIYLKGDPTRLRQVLTNLIGNAIKFTEKGEIVIKASTTRK--DNNR 453

Query: 412 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 471
           V   L S K+T  G    DR   +K F     DGST                        
Sbjct: 454 VNLHL-SIKDTGVGINPQDRIRLFKAFSQL--DGST------------------------ 486

Query: 472 PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 531
                              +R +GGTG+GL+IS+ LV  M G +   S P  GS F FT 
Sbjct: 487 -------------------TRKYGGTGLGLTISRELVSLMGGVLKCDSSPGRGSDFFFTL 527

Query: 532 VFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 591
                    N  N Q+     N      +G+K L++D  P   ++    I    ++ +  
Sbjct: 528 PM-----RKNRENPQKTGLINNDT---LKGLKVLIIDDNPTNLEILEGQIACFCMKFDSS 579

Query: 592 SDQLQCLS--QIASGSKI-INMILVEQEVWEKDTSVSTLFVNNLRKLGCG--FQSKLFLL 646
               + L   QIA    +  +++L++  + + D          +R++      +    ++
Sbjct: 580 LRGAEGLKKLQIAQQENVPFDLVLLDMNMPDMDG------FEVIRRIKAAPDLKKPSIIM 633

Query: 647 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL 706
             S+  S  +       I + + KP+R S L  SL + +    KG          S + +
Sbjct: 634 LTSVWISGEDQKAMHSGINAYLTKPVRQSDLQNSLLKVLSQTLKGERFQSVTRQTSEKEI 693

Query: 707 L-LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 765
                 IL+ +DN  N +V    L+++G  V     G +A E+ +     D   MD QMP
Sbjct: 694 KPFDLHILVAEDNLTNQEVTMGMLRKFGCRVSLAVNGSQAVEIFLKELP-DLVLMDCQMP 752

Query: 766 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 825
           EMDG++A   IR+                  +E   N   PI+A+TA  ++   E+CL +
Sbjct: 753 EMDGYQAAGEIRK------------------HEKALNIRTPIVALTAHALEGDKEKCLAA 794

Query: 826 GMDGYVSKPFEAEQLYREVSRFFPPIPDR 854
           GMD Y+SKPF++E L   ++R+     DR
Sbjct: 795 GMDDYLSKPFKSEMLQFIINRWSVSGKDR 823


>gi|334131300|ref|ZP_08505065.1| Putative histidine kinase [Methyloversatilis universalis FAM5]
 gi|333443649|gb|EGK71611.1| Putative histidine kinase [Methyloversatilis universalis FAM5]
          Length = 1042

 Score =  248 bits (634), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 194/634 (30%), Positives = 299/634 (47%), Gaps = 106/634 (16%)

Query: 228 IFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 287
           +F A ++ I + +     MM  +  AEAA+ AKS FLA +SHEIRTPMN ++GM ++ +D
Sbjct: 361 LFTAFLSDIGERKAAEEQMMAARDAAEAANRAKSDFLANMSHEIRTPMNAIMGMTELALD 420

Query: 288 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 347
           T+L   Q++Y+   + S +AL++LI+E+LD +K+E+G+L+ E + F+LR ++  ++   +
Sbjct: 421 TDLSAEQREYLSLVKQSSEALLTLIDEILDFSKIEAGRLDFEHIPFSLRDVVGAIVRTLA 480

Query: 348 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 407
            K   K V+L   I   V + +IGDP R RQ++TNL+GN++KFTE+G++ VTV L     
Sbjct: 481 PKP-GKPVQLGCRIDPSVADGVIGDPTRIRQVLTNLIGNALKFTERGNVDVTVTL----- 534

Query: 408 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 467
                                                      + S  D   L  +V DT
Sbjct: 535 -------------------------------------------EHSDEDTQQLRFAVRDT 551

Query: 468 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
           G GIP + Q  IF  F Q   S +R  GGTG+GL+I   LV RM G +G  S    G+TF
Sbjct: 552 GIGIPEDKQGLIFEAFSQADSSTTRKFGGTGLGLAICTRLVRRMGGTLGVTSRLGHGATF 611

Query: 528 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 587
            F+         +    S           S  +G+  LV++P     +     + +  + 
Sbjct: 612 HFSVPLTRARGGALTTMS----------PSTLEGLPLLVIEPDSTSRQQIAAQLAQWQVN 661

Query: 588 VEVVSDQLQCLSQIASG---SKIINMILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQSK 642
             + +D  + +  I S    ++    +LV +++  +D    V TL   +  +L       
Sbjct: 662 ARLCADLDEGIGAIVSAEAEAQCFRALLVAEDLAARDGWALVHTLAGQSAAEL------P 715

Query: 643 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS 702
           + LL +      A T     SI  V+ +P++++ L  +L  A G G+          S S
Sbjct: 716 IILLHDGA----APTVGLPPSINGVVARPVQTAPLLDALITATGAGSARCASGASALSPS 771

Query: 703 LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG----KKATELLMPPHQFDAC 758
               L    +L+ +DN VN  +A   L+R G  V  V+ G     KA E      ++DA 
Sbjct: 772 EHRPL---TLLLAEDNPVNQTLAVRLLERLGHRVDVVDNGLSAVSKAAE-----QRYDAI 823

Query: 759 FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
            MD+QMP+M GFEAT+ IR  +         GE            H PI+AMTA  +   
Sbjct: 824 LMDLQMPQMGGFEATRHIRAQD---------GE-----------RHTPIIAMTAHAMAGD 863

Query: 819 YEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
            E+C  +GMD YVSKP +   L R +     P P
Sbjct: 864 REKCFAAGMDAYVSKPVQVAALIRALEEALKPSP 897


>gi|423686824|ref|ZP_17661632.1| GacS hybrid sensory histidine kinase [Vibrio fischeri SR5]
 gi|371494892|gb|EHN70490.1| GacS hybrid sensory histidine kinase [Vibrio fischeri SR5]
          Length = 931

 Score =  248 bits (634), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 203/686 (29%), Positives = 317/686 (46%), Gaps = 124/686 (18%)

Query: 190 DPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVEEDY 243
           D  R+  +  R + K    L  +   I  + I+    H      I QAT +    +E+  
Sbjct: 211 DRIRRGHLDVRIENKLHGELDTLKNGINAMAISLSEYHVEMQQSIDQATSDLRETLEQLE 270

Query: 244 HGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRT 300
              +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T L   QQDY++T
Sbjct: 271 IQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTSLSENQQDYLQT 330

Query: 301 AQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVY 360
            + S   L+++IN++LD +K+E+GKL LE + F+ +  LD+V+SL +  + +KG+E+ + 
Sbjct: 331 IERSANNLLTIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLK 390

Query: 361 ISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSK 420
           I  RVP  LIGDP R +Q++ NL+GN+IKFTEKG+I ++V L                  
Sbjct: 391 IDQRVPSGLIGDPLRIQQVLNNLVGNAIKFTEKGNIDISVEL------------------ 432

Query: 421 NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 480
                                         K  + D ++L   V DTG GI    Q+++F
Sbjct: 433 ------------------------------KHLTDDYVDLQFVVRDTGIGISERQQAQLF 462

Query: 481 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG-NGSST 539
             F Q   SISR +GGTG+GL I++ L+ +M GEIG  S  + GSTF FT          
Sbjct: 463 QAFSQADASISRRYGGTGLGLVITQKLISQMGGEIGLSSRLHQGSTFWFTIRMNPTDLPM 522

Query: 540 SNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV-------EVVS 592
            NEH+  Q+  +           K L+++P    A + +      G+ V       E++ 
Sbjct: 523 LNEHDITQLERK-----------KLLLIEPNMQSASILQQQFISHGVFVTYRSTLPEIIE 571

Query: 593 DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 652
                L  ++S SK  ++  +++   +   + ST+ V        G  S    L + ++ 
Sbjct: 572 PHDYALISLSSNSK-PSIETIQEMTSQLSANCSTIIV--------GLPSTELALTDELNQ 622

Query: 653 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM---SLRHLLLG 709
                     S  + + KP     L  +L     +  K      ELP +   +     L 
Sbjct: 623 ---------FSHITCLSKPFAKKKLLDAL-----LVEKDRQPVPELPDLMAHASEEQKLP 668

Query: 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
            K++ VDDN  NLK+ +A L      V+  + G  A +     H FD   MDIQMP+MDG
Sbjct: 669 IKVMAVDDNPANLKLISALLSEQVETVITCDNGLDAVQQATEQH-FDIILMDIQMPKMDG 727

Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
             A K IR                    +   N   P++A+TA  ++   E  +  GMD 
Sbjct: 728 VMACKEIR--------------------KTALNAQTPVVAVTAHAMEGERERLISEGMDD 767

Query: 830 YVSKPFEAEQLYREVSRFFPPIPDRS 855
           Y++KP E E + ++V   + P+ D S
Sbjct: 768 YLTKPIE-EHVLQQVIIHWSPLTDNS 792


>gi|2073556|gb|AAB53936.1| sensor/regulator protein RpfA [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 929

 Score =  248 bits (634), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 193/609 (31%), Positives = 295/609 (48%), Gaps = 112/609 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NG++G     + T L+ TQ DY+ T + S   L+
Sbjct: 282 KKRAQEAARIKSEFLANMSHELRTPLNGLIGFTRQTLKTPLNTTQTDYLLTIERSANNLL 341

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F+L   LDDV+ L +  + +KG+EL + I + VPE  
Sbjct: 342 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 401

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +QIITNL+GN+IKFTE+G+I + V    + +  + +E                
Sbjct: 402 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHQVLLE---------------- 445

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                           V + DTG GI    QS++F  F Q   S
Sbjct: 446 --------------------------------VQIRDTGIGIAELQQSQLFQAFRQADTS 473

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S  + GSTF F             H +  +N
Sbjct: 474 ISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTFWF-------------HITLPLN 520

Query: 550 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIA 602
             P+++ +E      QG     V+  PI A+ +      L I  Q  ++        Q+ 
Sbjct: 521 --PHAIPTEPAYTMLQGKHLAYVEYHPIAAQAT------LDILSQTPLIVSYSPTFEQLP 572

Query: 603 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA-NTSTDG 661
            G    +++L+   V  ++T +   +   LR + C     + L   S++   A    T G
Sbjct: 573 EGE--FDILLLGIPVQYRNTLLD--YTPRLRDI-CRRSPCVILALPSLAQMDAEQLKTFG 627

Query: 662 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL-LGRKILIVDDNNV 720
           V   + + KPL +S L   LQ +          +      ++RHL  L  +++ VDDN  
Sbjct: 628 VH--ACLSKPLAASRLLPLLQDSTLFQFSFLPDDTASHQSAVRHLARLPLRVMAVDDNPA 685

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
           NLK+    L+     ++  E G+ A    EL    +Q D   MDIQMP MDG  A+++IR
Sbjct: 686 NLKLIGTLLEEQVETIILCESGQDAIAQAEL----NQCDIILMDIQMPGMDGICASELIR 741

Query: 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
           ++ H+                       PI+A+TA  +    E  LRSGMD Y++KP + 
Sbjct: 742 QIPHHAT--------------------TPIIAVTAQTMTGEREHLLRSGMDDYLAKPIDE 781

Query: 838 EQLYREVSR 846
           + L   ++R
Sbjct: 782 QMLKSVLTR 790


>gi|156932728|ref|YP_001436644.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156530982|gb|ABU75808.1| hypothetical protein ESA_00517 [Cronobacter sakazakii ATCC BAA-894]
          Length = 919

 Score =  248 bits (634), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 189/611 (30%), Positives = 296/611 (48%), Gaps = 118/611 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  + DKG+EL + +   VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFT+ G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S P+ GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++     +    GM+   V+     AK +R  +    + V V S  L  L Q    
Sbjct: 522 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLANTPLTV-VYSPDLASLPQAHYD 578

Query: 605 SKIINMILVEQEVW----EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 660
             +    + ++E      ++  S +TL    +  L C  Q    +L             +
Sbjct: 579 ILLYAAPVTDREPLSMRHDQLASAATLTDCLILALPCHAQINAEML-----------KKE 627

Query: 661 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
           G S  + ++KP+ ++ L   L     +     I   ELP      + +   ++ VDDN  
Sbjct: 628 GAS--ACLLKPVTATRLMPLLLEHCRL-----IHARELPEGDQSRMPM--TVMAVDDNPA 678

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
           NLK+  A L+     VV  E G +A E  +L P   FD   MDIQMP+MDG  A ++IR+
Sbjct: 679 NLKLIGALLEDMVQHVVLCESGHQAVERAMLQP---FDIILMDIQMPDMDGIHACELIRK 735

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
           +                        H PI+A+TA  +    E+ L +GM+ Y++KP E E
Sbjct: 736 LPQ--------------------QQHTPIIAVTAHAMSGQKEKLLSAGMNDYLAKPIEEE 775

Query: 839 QLYREVSRFFP 849
           +L   + R+ P
Sbjct: 776 KLRAMLLRYQP 786


>gi|261342213|ref|ZP_05970071.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316]
 gi|288315547|gb|EFC54485.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316]
          Length = 919

 Score =  248 bits (634), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 185/614 (30%), Positives = 293/614 (47%), Gaps = 124/614 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + +EL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 TIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         V  +G  T   
Sbjct: 475 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNKGSTFWFHINLDLNPNVLTDGPITDCL 534

Query: 543 HNSQQMNNQPNSVSSEFQGMKALVVDPRPI-------RAKVSRYHIQRLGIQVEVVSDQL 595
              +    +PN+ +++   +  L   P  +          V  Y I  +GI V    +  
Sbjct: 535 KGMRLAYVEPNAAAAQCT-LDVLSTTPLEVIYSPTFSALAVEHYDILLMGIPVTFTGE-- 591

Query: 596 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 655
                          + ++QE   K  +++      L  L C  Q     L N       
Sbjct: 592 ---------------LTMQQERLAKAAAMTDYL---LLALPCHAQINAEELKN------- 626

Query: 656 NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIV 715
               DG +  + ++KPL ++ L  +L     + N+       LP ++  H  L   ++ V
Sbjct: 627 ----DGAA--ACLLKPLTATRLLPALTEYCRLSNQ------PLPLVNDEH-KLPMTVMAV 673

Query: 716 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI 775
           DDN  NLK+    L+     V   + G +A E      QFD   MDIQMP MDG  A ++
Sbjct: 674 DDNPANLKLIGVLLEDQVQHVELCDSGAQAVE-QAKQMQFDLILMDIQMPGMDGIRACEL 732

Query: 776 IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
           IR++ H                        P++A+TA  +    E+ L +GM+ Y++KP 
Sbjct: 733 IRQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPI 772

Query: 836 EAEQLYREVSRFFP 849
           + E+L+  + R+ P
Sbjct: 773 DEEKLHSLLLRYKP 786


>gi|452966289|gb|EME71301.1| Signal transduction histidine kinase [Magnetospirillum sp. SO-1]
          Length = 1187

 Score =  248 bits (633), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 180/619 (29%), Positives = 285/619 (46%), Gaps = 116/619 (18%)

Query: 253  AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
            AE A  AKS FLAT+SHEIRTPMNGVL M  +L D  L   Q++  R  + S  +L+++I
Sbjct: 523  AEEASQAKSLFLATMSHEIRTPMNGVLTMAHLLEDMPLPAEQREMARVIRDSATSLLTII 582

Query: 313  NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
            N++LD +K+E+GKL+LE V  ++  +++ V  L + ++Q+KG+ L  ++   + + ++GD
Sbjct: 583  NDILDFSKIEAGKLQLELVELSVSELVEGVADLLTIRAQEKGISLITFVEPALADRVVGD 642

Query: 373  PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 432
            P R RQIITNL GN+IKFT+KG++ ++   +                             
Sbjct: 643  PIRLRQIITNLAGNAIKFTDKGYVRISARAM----------------------------- 673

Query: 433  HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492
                       D    P +        L  ++ DTG G+  E Q+R+F PFMQ   +ISR
Sbjct: 674  -----------DPRERPLR--------LEFAITDTGIGLDAEQQARLFEPFMQADVTISR 714

Query: 493  THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 552
             +GGTG+GLSI + LV  M+G+IG  S    GSTF F                 Q+  +P
Sbjct: 715  RYGGTGLGLSICRRLVAMMEGDIGVRSNIGQGSTFWF-----------------QVPLEP 757

Query: 553  NSVSSE----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII 608
                +E      G+  LV+   P+ A+  R ++  LG QV VV         + +   + 
Sbjct: 758  VEAEAEAGPDLSGIAVLVLAEGPVAAECLRQYLGHLGAQVAVV---------VGAEGAVA 808

Query: 609  NMILVEQEVWEKDTSVSTLFVNNLRKLGCG----------FQSKLFLLANSISSSRANTS 658
             +       W  D ++     +   ++G             + K+ +L +  + +  +  
Sbjct: 809  AVRAAALAGWTYDVALLDGGQDFRMRMGVAGALVTAAGPDLELKVAMLVSQDAFAAVSAE 868

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMGVGN--------KGNIRNWELPSMSLRHLLLGR 710
                 + + + KP+R   L  S+  A+G  +        +G    W+ P         G 
Sbjct: 869  VKAAGLYAALPKPVRRRQLWRSVAAAVGRASAEADTAEGEGIEEGWK-PPAMEEAAAAGA 927

Query: 711  KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
             IL+ +DN  N  V    ++R G A+  V  G +A E  M    +     D  MPEMDG+
Sbjct: 928  LILVAEDNPTNKVVIRHLMERLGYAIEVVGNGAEAWE-RMQIRDYGLLLTDCHMPEMDGY 986

Query: 771  EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            E T+ IRE                  +E  +   +PI+A+TAD +  T   CL  GM+ +
Sbjct: 987  ELTQRIRE------------------WEMETGHLLPIVALTADALAGTARRCLDCGMNAF 1028

Query: 831  VSKPFEAEQLYREVSRFFP 849
            ++KP +  QL   + R  P
Sbjct: 1029 LAKPIDLAQLDATIRRLLP 1047


>gi|117922447|ref|YP_871639.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
 gi|117614779|gb|ABK50233.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
          Length = 1626

 Score =  248 bits (633), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 184/605 (30%), Positives = 284/605 (46%), Gaps = 97/605 (16%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++A+ A+ AKS FLA +SHEIRTPMN VLGML ++  T L V QQ YV  AQ + K+L+
Sbjct: 890  KQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQTAAKSLL 949

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
             L+N++LD +K+++GKL+L+    ++  ++ D+  + S    +  VE+   +   +P  L
Sbjct: 950  GLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSALPAWL 1009

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            + D  R +QI+ NL GN++KFT  G + V +  +    +S+ V+                
Sbjct: 1010 LADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTVQ---------------- 1053

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                             S+ D+G GI  E   RIFT F Q   S
Sbjct: 1054 --------------------------------FSIVDSGIGISEEQIERIFTGFEQAESS 1081

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             SR  GGTG+GL+ISK LV  M G++   S   +GS F F   F      +N        
Sbjct: 1082 TSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFDLTFPVMEVEANPR------ 1135

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL---SQIASGSK 606
                   ++  G + LVVD   I  ++    +   G  VE  S   Q +    Q  + ++
Sbjct: 1136 -------ADLSGYRILVVDDNQITTEILSKILSDYGCVVETASGGYQAIEKVKQATANAQ 1188

Query: 607  IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
              +++L++   W             L+  G G  + L ++  +        S    ++P 
Sbjct: 1189 QFDVVLMD---WRMPDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGHEVIAESQHINNVPF 1245

Query: 667  V--IMKPLRSSMLAASLQRAM-GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 723
            V  + KP+ S +LA ++  A+ G     N      P    + LL G  +L+V+DN +N +
Sbjct: 1246 VNFLTKPVTSQILAEAVLNAIEGKTMDAN------PKPRSQRLLAGLTLLVVEDNQLNRE 1299

Query: 724  VAAAGLKRYGAAVVCVERG-KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
            V    L   GA VV  E G +  T++L     FDA  MD+QMP++DG EAT+ IR  +  
Sbjct: 1300 VIDELLTYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDIDGLEATRRIR-ADGR 1358

Query: 783  FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
            F+                    +PILAMTA+  QA  +ECL +GM+ +VSKP + +QL  
Sbjct: 1359 FD-------------------QLPILAMTANASQADKQECLEAGMNAHVSKPIDMQQLLP 1399

Query: 843  EVSRF 847
             + R 
Sbjct: 1400 NILRL 1404


>gi|160873991|ref|YP_001553307.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|378707231|ref|YP_005272125.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
 gi|418024379|ref|ZP_12663362.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
 gi|160859513|gb|ABX48047.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315266220|gb|ADT93073.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
 gi|353536339|gb|EHC05898.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
          Length = 1786

 Score =  248 bits (633), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 181/609 (29%), Positives = 304/609 (49%), Gaps = 91/609 (14%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++A+AA  AK  FLA +SHEIRTPMN ++GM  + + TELD  Q++YV   + + ++L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            S+IN++LD +K+E+GKL++++V F L  +L+D+  +FS K+  K +EL   ++  VP  L
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYL 1152

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GD  R  Q++ NLM N+IKFTE+G + +++ LVE+  D + +   +  S   L+    A
Sbjct: 1153 LGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQA 1212

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                  K FK+F Q                      DT                     S
Sbjct: 1213 ------KLFKSFTQ---------------------ADT---------------------S 1224

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+I K LV  M G+IG  S    GSTF FT            H S   +
Sbjct: 1225 TTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKL---------HIS---D 1272

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI---ASGSK 606
             Q   +  E +GM  LVVD       +    ++ +G +V+ V    + +S+    A    
Sbjct: 1273 GQKLVLEQELEGMSVLVVDDNATARDIMCTTLESMGFRVDTVRSGEEAISRCLLQAYEVA 1332

Query: 607  IINMILVEQEVWE--KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
            +I+  +   +  E  +   +     +  +           L+ ++ +     T  + +++
Sbjct: 1333 LIDWKMPNMDGLETARQIQLQAQSQSQSQSQPQSHPQPKILMVSAHADHEFLTQIEQLAL 1392

Query: 665  PSVIMKPLRSSMLAASLQRAMGVGNKGNI---RNWELPSMSLRHLLLGRKILIVDDNNVN 721
               I KP+ +S L   +  A  +G +G +   R  E  +  L   L G++IL+V+DN +N
Sbjct: 1393 AGYISKPISASRLLDGIMNA--IGREGILPVRRRTEELAPQLLLPLQGKRILLVEDNEMN 1450

Query: 722  LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
            L+VA+  L++ G  +     G+ A + L   H FD   MD QMP MDG++AT+ IR    
Sbjct: 1451 LEVASEFLEQVGIILSIATNGQIALDKLSQQH-FDLVLMDCQMPVMDGYQATQAIR---- 1505

Query: 782  NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
                  +R E++          ++P++AMTA+ +    + C+R+GM+ +++KP E   LY
Sbjct: 1506 ------KRPELA----------NLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLY 1549

Query: 842  REVSRFFPP 850
            + + ++  P
Sbjct: 1550 QTLLKYLAP 1558


>gi|375012435|ref|YP_004989423.1| PAS domain-containing protein [Owenweeksia hongkongensis DSM 17368]
 gi|359348359|gb|AEV32778.1| PAS domain S-box [Owenweeksia hongkongensis DSM 17368]
          Length = 1360

 Score =  248 bits (633), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 185/588 (31%), Positives = 267/588 (45%), Gaps = 106/588 (18%)

Query: 261  SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 320
            S FLAT+SHEIRTPMNGV+GM  +L+ T+L+  Q DYV T + SG AL+S+IN++LD +K
Sbjct: 844  SDFLATMSHEIRTPMNGVIGMTSLLLQTKLNAEQLDYVNTIRLSGDALLSVINDILDFSK 903

Query: 321  VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 380
            +E+G + LE   F +   +++ + L S +  +KG+EL  +I   VP  + GD  R RQI+
Sbjct: 904  IEAGNMSLEEFPFEITQCVEEAVELLSSRVSEKGIELLYFIDPSVPAVVSGDITRLRQIL 963

Query: 381  TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 440
             NL+ N+IKFTEKG I V V                                        
Sbjct: 964  INLLSNAIKFTEKGEIVVNV---------------------------------------- 983

Query: 441  FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 500
                      K      + +  SV DTG GI  + Q ++FT F Q   S +R +GGTG+G
Sbjct: 984  --------SAKKKEDSRVQIHFSVRDTGIGITADQQKKLFTAFTQADSSTTRKYGGTGLG 1035

Query: 501  LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 560
            L+I K L   M GEI   S P  GS F FT +         +H  +   N  N   S   
Sbjct: 1036 LAICKRLTSLMDGEIWVESTPGGGSDFQFTIM----QEVIRQHRIETDTNFEN--DSILY 1089

Query: 561  GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEK 620
            G K L+VD      K+        GI V   ++  +   QI           ++ + W  
Sbjct: 1090 GRKCLIVDDNKTNLKILEKQFNLWGIDVTCFNNPQKAYKQI-----------IKTQNW-- 1136

Query: 621  DTSVSTLFVNNLRKLGCGFQSKLFLLANS-----ISSSRANTSTDGVS--IPSVIMKPLR 673
            D  +    +  L  +    + +L    N      +SS+    S   ++       MKP R
Sbjct: 1137 DFMIFDFEMPGLDGIELAEKIRLRYSKNELPIILLSSAYPEVSEHKINSLFSHYFMKPTR 1196

Query: 674  SSMLAASLQRAMGVGNKGNIRNW------ELPSMSLRHLLLGRKILIVDDNNVNLKVAAA 727
             S+L  SL + +   ++    N       EL  ++ +H L    IL+ +DN VN K+A  
Sbjct: 1197 HSILKKSLVKLLTTKDENLNSNAVETDIEELSMLASKHPL---TILLAEDNMVNQKLAVL 1253

Query: 728  GLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT-KIIREMEHNFNNR 786
             L++ G  +  V  G +  E +     +D  FMD+QMPEMDG EAT +I+R   HN    
Sbjct: 1254 TLEKMGYHMDVVANGFEVLEAI-ERQSYDLIFMDVQMPEMDGIEATHEILRIYGHN---- 1308

Query: 787  IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
                                I+AMTA+ ++   E  L  GMD Y+SKP
Sbjct: 1309 -----------------RPSIVAMTANAMEGDRERFLEEGMDDYISKP 1339


>gi|374294279|ref|YP_005041304.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
 gi|357428277|emb|CBS91234.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
          Length = 1269

 Score =  248 bits (633), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 183/617 (29%), Positives = 289/617 (46%), Gaps = 110/617 (17%)

Query: 249  LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 308
            L+ +AEAA  AKS+FLA +SHEIRTPMNG++GM ++L DT L   Q  + +  ++S  AL
Sbjct: 592  LRARAEAATQAKSEFLAAMSHEIRTPMNGIMGMTELLFDTPLTAEQHQFAQAIRSSSNAL 651

Query: 309  VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 368
            +++IN++LD +K+E+G++ +E + F+   +++ V+ L + ++ +KG+E+  YI   +  T
Sbjct: 652  LTIINDILDISKLEAGRVTIETLPFDPADLVEGVVELLTPRAHEKGIEIGFYIDPFLRRT 711

Query: 369  LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 428
            L+GDP R RQI+ NL+GN++KFT++G + V +    E +D+ E             G+ V
Sbjct: 712  LLGDPTRIRQILVNLVGNAVKFTDQGSVAVEL----EALDATE-------------GHLV 754

Query: 429  ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 488
                                           L ++V DTG GIP EA   +F  F QV  
Sbjct: 755  -------------------------------LRMTVTDTGIGIPAEALPSLFNKFQQVDG 783

Query: 489  SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 548
            SI+R  GGTG+GL+I + L   M G I   S    GS F                    +
Sbjct: 784  SITRKFGGTGLGLAICRQLSELMGGSIAVESSLGAGSRFVVDLPLA------------ML 831

Query: 549  NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGS 605
            +           G +ALVVD   +  +V    +  LG +   V    D L+ L++ A G 
Sbjct: 832  DEALPPAEQPLAGRRALVVDDLAVNRRVLAAMLDSLGARPTAVDNGPDALEALTRAAVGG 891

Query: 606  KIINMILVEQEV--WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
            +  +++LV+Q +     D  ++ +  N +  LG    ++  L+A    ++RA+       
Sbjct: 892  RPFDVVLVDQTMPGMGGDALLAAIAGNPM--LG---GTRRVLIAGLGPAARADCGPVQGL 946

Query: 664  IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR------------K 711
              +++ +PLR S L   L         G  +    PS + R    G+            +
Sbjct: 947  AHAILNRPLRQSALVGCL--------TGLFQAAVPPSSADRQAAEGQPADRSEEPARSGR 998

Query: 712  ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
            IL+ +DN  N   A   L++ G  V   E G++A          D   MD+QMP MDG E
Sbjct: 999  ILLAEDNRTNQLFATTLLRKLGYTVEVAEDGEQAMAAAC-RGGIDLVLMDVQMPGMDGLE 1057

Query: 772  ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
            A + IR     F                     +PI+A+TAD +  T E CLR+GM  Y+
Sbjct: 1058 AAQAIRARGGRFAG-------------------LPIIALTADAMPGTRELCLRAGMSDYL 1098

Query: 832  SKPFEAEQLYREVSRFF 848
            +KP     L   + R+ 
Sbjct: 1099 TKPISRAGLLAALDRWM 1115


>gi|149188199|ref|ZP_01866493.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
 gi|148837788|gb|EDL54731.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
          Length = 1205

 Score =  248 bits (633), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 185/646 (28%), Positives = 306/646 (47%), Gaps = 103/646 (15%)

Query: 226 GHIFQATVNRIAKVEEDYHGMME--------LKKKAEAADVAKSQFLATVSHEIRTPMNG 277
           G IF +T+  I  +    H  +E         + +A+ A+ AKS FLA +SHEIRTPMN 
Sbjct: 439 GIIFMSTIVFIVLLANKSHAALEKSADKLAIARDEADYANQAKSDFLANMSHEIRTPMNA 498

Query: 278 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337
           ++GM  + + T+L   Q++Y++  + S   L+ LIN++LD +K+E+GKL++E V F L  
Sbjct: 499 IIGMSYLALKTDLTKAQRNYIQKVKLSADTLLGLINDILDFSKIEAGKLDIEHVDFRLEN 558

Query: 338 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 397
           +LD++ +L   K+ ++G+EL ++ S  VP  L GDP R  QI+TNL  N++KFTE+G + 
Sbjct: 559 VLDNISNLVGLKASEQGLELLIHTSKDVPTALYGDPLRLGQILTNLANNAVKFTEQGEVK 618

Query: 398 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 457
           +T+       D++E                                            D 
Sbjct: 619 ITI-----TADNLE-------------------------------------------NDD 630

Query: 458 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 517
           + L  +V DTG G+  E   ++F  F Q   S +R +GGTG+GL+ISK L   M G+I  
Sbjct: 631 VTLRFAVSDTGIGMTPEQTQKLFNKFTQADSSTTRKYGGTGLGLAISKELCLLMGGDIEV 690

Query: 518 VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 577
            S    GSTF FT          N   SQ +  +P  V +    +  L+VD       + 
Sbjct: 691 RSQFGEGSTFEFTI---------NMKRSQVLETKPIVVPTSLNHLNILIVDDNASARLIV 741

Query: 578 RYHIQRLGIQVEV---VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK 634
              +Q L   V     V   +  L+  A      ++++ +   W+         ++ +++
Sbjct: 742 EDILQSLNFSVRSANGVDSAIDALNHAAQSDSAFDVVITD---WQMPGKDGVELIHAIQQ 798

Query: 635 LGCGFQSKLFLLANSISSSRANTSTD-GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI 693
                  K+ +L        A++  + G+ +PS++ KP+ +S L  ++     + N    
Sbjct: 799 -SESLNPKILMLTAYDRQLLADSVQERGLIVPSILDKPVTASHLFDAIVGLYDIENHRTS 857

Query: 694 RNWELPSMSLRHL-----LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL 748
           R+ EL   +  HL     L G  +L+V+DN +N ++A   L+     V   + G+ A + 
Sbjct: 858 RD-ELEQQT--HLANVQHLAGAHLLLVEDNEINQELAVELLESQNIQVTVAQNGQVAID- 913

Query: 749 LMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL 808
           L     FD   MD QMP +DG+ AT+IIR   +  N+R                  +PI+
Sbjct: 914 LYKQMTFDGILMDCQMPVLDGYSATEIIR---NTLNDRA-----------------IPII 953

Query: 809 AMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIPDR 854
           AMTADV++   E   +SGM+  ++KP +   ++  ++R+    P R
Sbjct: 954 AMTADVMERDRERAYQSGMNDIIAKPIDVGIMFSTLARWITS-PQR 998


>gi|442611793|ref|ZP_21026496.1| hypothetical protein PALB_34970 [Pseudoalteromonas luteoviolacea B
           = ATCC 29581]
 gi|441746538|emb|CCQ12558.1| hypothetical protein PALB_34970 [Pseudoalteromonas luteoviolacea B
           = ATCC 29581]
          Length = 752

 Score =  248 bits (633), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 194/636 (30%), Positives = 292/636 (45%), Gaps = 123/636 (19%)

Query: 235 RIAKVEEDYHGMMEL-------KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 287
           R+AK +E  H +++L       K+KAE A   KS+FLA +SHEIRTPMNGV+GML +L  
Sbjct: 215 RLAKNKETQHALLQLNVKLAESKEKAEEASKLKSEFLANMSHEIRTPMNGVIGMLSLLEK 274

Query: 288 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 347
             L   Q ++V  A+ S ++L++LIN++LD +K+E+ KLELE V FNL A++ +++S  S
Sbjct: 275 EPLKDHQTNFVNVAKGSAQSLLTLINDILDFSKIEADKLELEEVEFNLEALISEMISALS 334

Query: 348 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 407
            K +   VE  +  S      ++GDP RFRQI++NL+ N+IKFT +G I V         
Sbjct: 335 YKVETNQVEFILDTSQVQHVFVVGDPIRFRQIVSNLVSNAIKFTSQGEILV--------- 385

Query: 408 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 467
              +  T+L                                      AD + +   + DT
Sbjct: 386 ---KFSTQL-------------------------------------DADRVCVSAQISDT 405

Query: 468 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
           G GI    QSR+F+ F QV  S +R  GGTG+GL+I K L   M G++G  S    GS F
Sbjct: 406 GIGISELEQSRLFSSFSQVDASTTRQFGGTGLGLAIVKKLCELMHGQVGVESEKGKGSRF 465

Query: 528 TFTAVFGNGSSTSNEHNSQQM---------NNQPNSVSSEFQGMKALVVDPRPIRAKVSR 578
            F   F    +       +Q          NN      SE       ++  R I  K++R
Sbjct: 466 FFDVYFDKSGAQHETACCKQKTLRGLLIEGNNSSAIAMSE-------MLKVRDINVKIAR 518

Query: 579 YHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638
             I+   + +      +  L++  +G K         E W +   V              
Sbjct: 519 TLIEANNL-INAYDFDVILLARTINGDK--------TEQWAQQLEV-------------- 555

Query: 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG--NIRNW 696
           F+S    L  S++                + KPL  + +  SL + +     G   I   
Sbjct: 556 FKSLKIALLGSLADEETKAYFIDKGFVDYVHKPLTPAQI-QSLCKQLEAKKTGLRKIDIE 614

Query: 697 ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ-- 754
           ELP     ++     +L+V+DN VN  VA+  L   G  V     G++A ++L   +Q  
Sbjct: 615 ELPD----NVKFNHHVLLVEDNKVNQLVASKLLDNLGLKVTIANNGREAIDVLKVHYQET 670

Query: 755 --FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA 812
                  MD QMPEMDGFEAT+ IR+ E     R++R               +PILA+TA
Sbjct: 671 DPIALVLMDCQMPEMDGFEATQRIRQGEA--GTRLKR---------------IPILALTA 713

Query: 813 DVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           + ++   E CL +GM+ Y++KP + + L   +S+F 
Sbjct: 714 NAMKGDEENCLNAGMNDYLAKPIQVDALTHSLSKFL 749


>gi|238791234|ref|ZP_04634873.1| Signal transduction histidine-protein kinase barA [Yersinia
           intermedia ATCC 29909]
 gi|238729367|gb|EEQ20882.1| Signal transduction histidine-protein kinase barA [Yersinia
           intermedia ATCC 29909]
          Length = 911

 Score =  248 bits (633), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 177/609 (29%), Positives = 282/609 (46%), Gaps = 117/609 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T L  TQ DY++T Q S   L+
Sbjct: 273 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLTPTQTDYLQTIQRSANNLL 332

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +IN+VLD +K+E+ KL LE + F LR  LD+V+ L +  + +KG+EL +++++ VPE L
Sbjct: 333 CIINDVLDFSKLEAEKLILEHIPFPLRGALDEVIILLAHTAHEKGLELTLHVNNDVPEQL 392

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GD  R +QI+TNL+GN+IKFTE+G+I        +++ +++ +T+              
Sbjct: 393 VGDAMRLQQIVTNLLGNAIKFTEQGNI--------DILLAVQAKTDQQ------------ 432

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                       + L+V + DTG GI    Q+++F  F Q   S
Sbjct: 433 ----------------------------VTLVVEIHDTGIGISESQQAQLFQAFRQADAS 464

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ--- 546
           ISR HGGTG+GL I++ LV  M G+I F S  + GSTF F        + S  H      
Sbjct: 465 ISRRHGGTGLGLVITERLVKEMGGDISFYSQVDRGSTFRFHLTLDLNETVSYRHPDMSYL 524

Query: 547 --------QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 598
                   + N      + +   +  L V   P  A++ R H   L + V +       +
Sbjct: 525 EGKTLAYIERNTCAARAALDILSVTPLQVTHSPTLAQLPRQHYDFLLVGVPIPFRNNMAV 584

Query: 599 SQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 658
            Q     K++  + + + V     S S +    L+++G                      
Sbjct: 585 HQ----DKLVAALKISEHVILALPSQSQVEAEQLKQMGAK-------------------- 620

Query: 659 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
                  + ++KPL S+ L   L           +   + P+       L  K++ VDDN
Sbjct: 621 -------ACLVKPLSSNRLIPLLLSEEPHAESPVVEQTDKPAK------LPFKVMAVDDN 667

Query: 719 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             NLK+    L+      V  + G KA       +  D   MDIQMPE+DG  A+++I +
Sbjct: 668 PANLKLIGTLLEEQVEETVLCDSGAKAIA-YARENTLDIILMDIQMPEIDGIRASEVIHQ 726

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
           M H+ +                     PI+A+TA  ++   E+ L+ GM  Y++KP +  
Sbjct: 727 MSHHLD--------------------TPIIAVTAHAVRGQQEQLLKLGMADYLAKPIDET 766

Query: 839 QLYREVSRF 847
           +L + +SRF
Sbjct: 767 RLIQALSRF 775


>gi|365835928|ref|ZP_09377336.1| signal transduction histidine-protein kinase BarA [Hafnia alvei
           ATCC 51873]
 gi|364565048|gb|EHM42785.1| signal transduction histidine-protein kinase BarA [Hafnia alvei
           ATCC 51873]
          Length = 913

 Score =  248 bits (633), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 190/616 (30%), Positives = 293/616 (47%), Gaps = 117/616 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T L+ TQ DY++T + S   L+
Sbjct: 278 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKTPLNATQSDYLQTIERSANNLL 337

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F LR  +D+V  L +  + +KG+EL + I + VPE +
Sbjct: 338 TIINDVLDFSKLEAGKLVLEHIPFLLRETVDEVTVLLAPSAHEKGIELTLNIRNDVPEHV 397

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q++TNL+GN+IKFTEKG+I + V L       +E+E  +       +G  ++
Sbjct: 398 IGDPMRIQQVLTNLLGNAIKFTEKGNIDIRVELRSATPHQVELEVLVHD-----TGIGIS 452

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           +R  S                                           ++F  F Q   S
Sbjct: 453 ERQQS-------------------------------------------QLFQAFRQADAS 469

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             HN+ Q N
Sbjct: 470 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNKGSTFWFHI------QLELNHNAPQ-N 522

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
           + P        G K L ++  P+ A+ +   +Q   ++V         L+Q+   S   +
Sbjct: 523 HFP---MQRLAGQKLLYIESNPVAAQCTLDLLQATPLEVSYSP----LLAQVIPDSH-YD 574

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG-----VSI 664
           ++LV          +   F ++  +     ++ L L    I +  ++T  D        I
Sbjct: 575 ILLV---------GLPVNFTSHDSQGEEKLRTALSLADRVILAMPSHTLLDSDELKMRGI 625

Query: 665 PSVIMKPLRSS-----MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 719
            S + KPL S+     +L  SL +   V  + N+    L  M+            VDDN 
Sbjct: 626 RSCLSKPLTSNRLLPILLDNSLPKRAPVVIEHNVERLPLSVMA------------VDDNP 673

Query: 720 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
            NLK+  A L       +    G++A       H+ D   MDIQMPEMDG   +++IR++
Sbjct: 674 ANLKLIGALLGELVEQTILCNSGEEAIA-KAKEHRLDIILMDIQMPEMDGIRTSELIRKL 732

Query: 780 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
               +                     PI+A+TA  I    E  LR+GMD Y++KP +   
Sbjct: 733 PRYID--------------------TPIIAVTAHAINGERERLLRAGMDDYLAKPIDENM 772

Query: 840 LYREVSRFF--PPIPD 853
           L + ++R++  P I D
Sbjct: 773 LRQLLARYYRNPEIQD 788


>gi|291086239|ref|ZP_06571413.1| sensor protein GacS [Citrobacter youngae ATCC 29220]
 gi|291068626|gb|EFE06735.1| sensor protein GacS [Citrobacter youngae ATCC 29220]
          Length = 811

 Score =  248 bits (633), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 182/605 (30%), Positives = 289/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 176 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 235

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L +  S DKG+EL + I + VP+ +
Sbjct: 236 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 295

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 296 IGDPLRLQQVITNLVGNAIKFTEGGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 352

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 353 DQSRLFQAFR---------------------------------------------QADAS 367

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 368 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HISLDLN 414

Query: 550 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN     S S    G +   V+P    A+ +   +    ++V + S     L +    
Sbjct: 415 --PNVLVDRSTSRCLAGKRLAYVEPNATAAQCTLDILSETPLEV-IYSPSFSGLPKDHYD 471

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             ++ + +  +E          L + + R       +   LLA    +            
Sbjct: 472 ILLLGIPVTFRE---------PLTMQHERLASAAAMTDFLLLALPCHAQINAEKLKQGGA 522

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +     +  LP  S     +   ++ VDDN  NLK+
Sbjct: 523 AACLLKPLTSTRLLPALTEYCQLNHSA---DQPLPDES----KIAMTVMAVDDNPANLKL 575

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     VV  + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 576 IGALLEDKVQHVVLCDSGHQAVDRAR-QMQFDLILMDIQMPDMDGIRACELIHQLPH--- 631

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E ++L+  +
Sbjct: 632 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEDKLHNLL 674

Query: 845 SRFFP 849
            R+ P
Sbjct: 675 LRYKP 679


>gi|359440163|ref|ZP_09230087.1| hypothetical protein P20429_0443 [Pseudoalteromonas sp. BSi20429]
 gi|358037998|dbj|GAA66336.1| hypothetical protein P20429_0443 [Pseudoalteromonas sp. BSi20429]
          Length = 1120

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 192/640 (30%), Positives = 304/640 (47%), Gaps = 102/640 (15%)

Query: 218  ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 277
            ++ +A+L+G +  ++  RI    E    ++  K+ AE A  AKS+FLA++SHEIRTPMNG
Sbjct: 571  LIAVAALIGSL-HSSQQRI----ETEQKLVAAKETAEQAVEAKSEFLASMSHEIRTPMNG 625

Query: 278  VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337
            VLGML+++  T+LD+ Q+ ++  AQ+S ++L+++IN++LD +K+E+GKL++E V FNL  
Sbjct: 626  VLGMLNIIKQTQLDLQQKHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIENVQFNLPR 685

Query: 338  ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 397
            +L +V+  F+ K +    +L +  +      +I DP R RQI+ NL+GN++KFT  G + 
Sbjct: 686  LLGEVVESFALKVEQNNTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTIDGEVV 745

Query: 398  VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 457
            +T  + E                                       DGS           
Sbjct: 746  ITAKVDETT-------------------------------------DGSF---------- 758

Query: 458  INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 517
              L  S+ DTG GI  + Q+ +F  F Q   S +R  GGTG+GL+I K L   M GE+  
Sbjct: 759  --LQCSIIDTGIGIDPKKQASLFDSFTQADTSTTRQFGGTGLGLAIVKQLCELMNGEVSV 816

Query: 518  VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 577
             S+   GSTF+FT       S   +  S  + N+             L++D   + A  +
Sbjct: 817  NSMQGEGSTFSFTIQIQPRLSKEQDLPSHLIKNK-----------HILIIDECSLNANTA 865

Query: 578  RYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637
               +   G +V  + D L+    + + +     ILV+   +EK        + N   +  
Sbjct: 866  SKQLTVWGAKVNCIHDYLEVDDYLNNVTTHPEAILVDYYFFEKAPQTHITALKNFINM-- 923

Query: 638  GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 697
                KL L+A    S     S  G+ +  +I KPL  S L  SL       N   I   +
Sbjct: 924  -HSCKLVLMAP--MSYSPEESKVGMEVDCMIFKPLTPSDLFDSLT------NDKYIEQQQ 974

Query: 698  LPSMSLRHLLLG-------RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 750
              +     L           ++L+V+DN +N  VA+A LK+ G      E G +A   L 
Sbjct: 975  QQAQLQNKLTKAPVLDSSEPQLLLVEDNKINQVVASALLKQAGVTFDIAENGLEAIVKLN 1034

Query: 751  PPH--QFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL 808
                  +    MD QMPEMDG++ATK IRE +    N            EN++     I+
Sbjct: 1035 AKQGKPYKLVLMDCQMPEMDGYQATKAIREGDAGKGN------------ENIT-----II 1077

Query: 809  AMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            A+TA+ +Q   E+CL +GM+ Y+SKP +   L  ++ ++ 
Sbjct: 1078 ALTANAMQGDKEKCLAAGMNDYLSKPLDLAALKPKLQQWL 1117


>gi|398792446|ref|ZP_10553077.1| signal transduction histidine kinase [Pantoea sp. YR343]
 gi|398213175|gb|EJM99770.1| signal transduction histidine kinase [Pantoea sp. YR343]
          Length = 909

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 179/606 (29%), Positives = 287/606 (47%), Gaps = 111/606 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T L   Q+DY+ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTGLSTNQRDYMSTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LE++ F LRA LD+ L L +  + DKG+E+ V +  +VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLVLESIPFPLRATLDETLVLLAPSAHDKGLEITVCLEKQVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QI+ NL+GN+IKFTE GH              I++  EL S  NT +     
Sbjct: 403 IGDPLRLQQIMINLIGNAIKFTEHGH--------------IDLRVELRSISNTRA----- 443

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                         L + V DTG GI  + QS++F  F Q   S
Sbjct: 444 -----------------------------ELEIQVHDTGIGISEQQQSQLFQAFRQADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M GEI F S  N GSTF               H    +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVSEMGGEIAFHSRQNQGSTFWV-------------HIHLDLN 521

Query: 550 NQPNSVSSEFQGMKAL---VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
               ++      ++A     ++P P  AK  +  +    +QV+  S  L+ +        
Sbjct: 522 PNAPAIPRMLDDLRATPLAYIEPHPAVAKAVQEMLSITPLQVQHFS-SLEEMPDTHFPLL 580

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
           ++ + + E        ++ T    +   +     S++ L A+ + +           I  
Sbjct: 581 LMGLPVTEPHPATLSDALITRLHAHADSVLLALPSEMMLFADDLRAR---------GIAG 631

Query: 667 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWE---LPSMSLRHLLLGRKILIVDDNNVNLK 723
            I KP+  + L   L          ++ +W+   LP  + + L     ++ VDDN  NLK
Sbjct: 632 CIAKPVSLTRLLPMLL---------DLHDWQSDVLPRGARQPL----TVMAVDDNPANLK 678

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           +  A L+     ++  +  ++A       H+ D   MDIQMP++DG  A++IIR +  + 
Sbjct: 679 LIGALLEEQVQHIILCDNAEQAIRQAR-LHKLDVILMDIQMPDIDGIRASEIIRSLPLHA 737

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
                                 PI+A+TA  +     + + +GM+ Y++KP + ++L + 
Sbjct: 738 TT--------------------PIVAVTAHALDGERAQLINAGMNDYLAKPIDEDKLSQL 777

Query: 844 VSRFFP 849
           + R+ P
Sbjct: 778 LQRYAP 783


>gi|429097710|ref|ZP_19159816.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
           dublinensis 582]
 gi|426284050|emb|CCJ85929.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
           dublinensis 582]
          Length = 670

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 188/607 (30%), Positives = 296/607 (48%), Gaps = 110/607 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L  TQ+D++ T + S   L+
Sbjct: 55  KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 114

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL V +   VP+ +
Sbjct: 115 SIINDVLDFSKLEAGKLLLESIPFPLRNTLDEVVTLLAHSAHDKGLELTVSVRHDVPDNV 174

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFT+ G+I + V       + +++E ++   ++T  G P  
Sbjct: 175 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 231

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 232 DQSRLFQAFR---------------------------------------------QADAS 246

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S P+ GSTF F             H S  +N
Sbjct: 247 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 293

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++     +    GM+   V+     AK +R  +    + V V S +L  L Q    
Sbjct: 294 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLDNTPLTV-VYSPELATLPQAH-- 348

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
               +++L    V +++    T+  + L +        +  L      +      +G S 
Sbjct: 349 ---YDILLYAAPVTDREP--LTMRHDQLARAATLTDCLILALPCHAQINAEMLKKEGAS- 402

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KP+ ++ L   L     + +   I   ELP  S   L +   ++ VDDN  NLK+
Sbjct: 403 -ACLLKPVTATRLLPLL-----LEHCRQIHARELPEGSQGKLAM--TVMAVDDNPANLKL 454

Query: 725 AAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
             A L+     VV  + G +A E   L P   FD   MDIQMP+MDG  A ++IR++   
Sbjct: 455 IGALLEDIVQHVVLCDSGHQAVERATLQP---FDIILMDIQMPDMDGIHACELIRKLPQ- 510

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                                H PI+A+TA  +    E+ L +GM+ Y++KP E E+L  
Sbjct: 511 -------------------QQHTPIIAVTAHAMSGQKEKLLSAGMNDYLAKPIEEEKLRA 551

Query: 843 EVSRFFP 849
            + R+ P
Sbjct: 552 LLLRYQP 558


>gi|86606313|ref|YP_475076.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
 gi|86554855|gb|ABC99813.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
          Length = 1459

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 199/623 (31%), Positives = 304/623 (48%), Gaps = 97/623 (15%)

Query: 222  ASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGM 281
            ASL G +  A    I   ++    M    + AEAA+ AKS+FLAT+SHEIRTP+N ++GM
Sbjct: 786  ASLAGSLVYAAGRDITLAKQAQEQMKAAMEAAEAANRAKSEFLATISHEIRTPINAIMGM 845

Query: 282  LDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 341
              +L+DT LD  Q+D+V+T +   + L+SLIN++LD +K+ES KLELE   F+L  ++++
Sbjct: 846  AGLLLDTSLDAQQRDWVQTIRYGSEVLLSLINDILDFSKIESQKLELEETPFSLPQLMEE 905

Query: 342  VLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVY 401
            +L L + ++Q K +EL  ++   +P TL+GDP R RQI+ NL+ N+IKFT +G + VTV 
Sbjct: 906  LLDLMAAQAQSKDLELVAWVDPALPATLVGDPNRLRQILANLLSNAIKFTPQGEVVVTVE 965

Query: 402  LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLI 461
              +E     +V+                     W  F+                      
Sbjct: 966  -AQEQDPQAQVQ---------------------WVSFQ---------------------- 981

Query: 462  VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 521
              V+DTG GIP E Q R+F PF QV  SISR +GGTG+GL+IS+ L   M G I   S P
Sbjct: 982  --VQDTGIGIPPEKQDRLFKPFSQVDSSISRQYGGTGLGLAISQRLCQLMGGTIWVQSQP 1039

Query: 522  NIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHI 581
              GSTF F        +         +   P        G + L+V+    + ++    +
Sbjct: 1040 GQGSTFGFRIPLKLPDAA--------LWATPTP-DPALAGQRVLLVEDNASQRQLLARLL 1090

Query: 582  QRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKD-TSVSTLFVNNLRKLGCGFQ 640
            Q  G+QV   S   +  +Q  + ++   + LV+  + + D  +++         L     
Sbjct: 1091 QSWGMQVTACSTVAE--AQAIAKAQTFELALVDTSLPDGDGLALARALQQEQPPL----- 1143

Query: 641  SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 700
             +L LL +     RA  ++ G S+P+ + KP+R+S L A L +        +++  +LP 
Sbjct: 1144 -RLVLLVD----RRAALASAG-SLPA-LGKPVRASQLRALLGQEKVPAAASHLKP-QLPL 1195

Query: 701  MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
             S   L    +IL+ +DN VN KV    L+R G     V  G +A + L     +D   M
Sbjct: 1196 ASRCPL----RILVAEDNPVNQKVIRLMLERLGYQPDIVANGLEALQALQ-LRAYDLVLM 1250

Query: 761  DIQMPEMDGFEATKIIR-EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
            D+ MPE+DG  AT+ IR E+      R                    ILA+TAD    + 
Sbjct: 1251 DLHMPELDGLAATRRIRSELPPERQPR--------------------ILALTADAFLESR 1290

Query: 820  EECLRSGMDGYVSKPFEAEQLYR 842
                 +G+DGY++KP +   L R
Sbjct: 1291 AAAEAAGVDGYLTKPLQPAVLER 1313


>gi|392535067|ref|ZP_10282204.1| sensor protein [Pseudoalteromonas arctica A 37-1-2]
          Length = 1120

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 192/640 (30%), Positives = 304/640 (47%), Gaps = 102/640 (15%)

Query: 218  ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 277
            ++ +A+L+G +  ++  RI    E    ++  K+ AE A  AKS+FLA++SHEIRTPMNG
Sbjct: 571  LIAVAALIGSL-HSSQQRI----ETEQKLVAAKETAEQAVEAKSEFLASMSHEIRTPMNG 625

Query: 278  VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337
            VLGML+++  T+LD+ Q+ ++  AQ+S ++L+++IN++LD +K+E+GKL++E V FNL  
Sbjct: 626  VLGMLNIIKQTQLDLQQKHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIENVQFNLPR 685

Query: 338  ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 397
            +L +V+  F+ K +    +L +  +      +I DP R RQI+ NL+GN++KFT  G + 
Sbjct: 686  LLGEVVESFALKVEQNNTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTIDGEVV 745

Query: 398  VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 457
            +T  + E                                       DGS           
Sbjct: 746  ITAKVDETT-------------------------------------DGSF---------- 758

Query: 458  INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 517
              L  S+ DTG GI  + Q+ +F  F Q   S +R  GGTG+GL+I K L   M GE+  
Sbjct: 759  --LQCSIIDTGIGIDPKKQASLFDSFTQADASTTRQFGGTGLGLAIVKQLCELMNGEVSV 816

Query: 518  VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 577
             S+   GSTF+FT       S   +  S  + N+             L++D   + A  +
Sbjct: 817  NSMQGEGSTFSFTIQIQPRLSKEQDLPSHLIKNK-----------HILIIDECSLNANTA 865

Query: 578  RYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637
               +   G +V  + D L+    + + +     ILV+   +EK        + N   +  
Sbjct: 866  SKQLTVWGAKVNCIHDYLEVDDYLNNVTTHPEAILVDYYFFEKAPQTHITALKNFINM-- 923

Query: 638  GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 697
                KL L+A    S     S  G+ +  +I KPL  S L  SL       N   I   +
Sbjct: 924  -HSCKLVLMAP--MSYSPEESKVGMEVDCMIFKPLTPSDLFDSLT------NDKYIEQQQ 974

Query: 698  LPSMSLRHLLLG-------RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 750
              +     L           ++L+V+DN +N  VA+A LK+ G      E G +A   L 
Sbjct: 975  QQAQLQNKLTKAPVLDSSEPQLLLVEDNKINQVVASALLKQAGVTFDIAENGLEAIVKLN 1034

Query: 751  PPH--QFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL 808
                  +    MD QMPEMDG++ATK IRE +    N            EN++     I+
Sbjct: 1035 AKQGKPYKLVLMDCQMPEMDGYQATKAIREGDAGKGN------------ENIT-----II 1077

Query: 809  AMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            A+TA+ +Q   E+CL +GM+ Y+SKP +   L  ++ ++ 
Sbjct: 1078 ALTANAMQGDKEKCLAAGMNDYLSKPLDLAALKPKLQQWL 1117


>gi|359782103|ref|ZP_09285325.1| two-component system sensor-response regulator hybrid protein
            [Pseudomonas psychrotolerans L19]
 gi|359369896|gb|EHK70465.1| two-component system sensor-response regulator hybrid protein
            [Pseudomonas psychrotolerans L19]
          Length = 1620

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 194/621 (31%), Positives = 291/621 (46%), Gaps = 94/621 (15%)

Query: 233  VNR-IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 291
            +NR I +  E  H + E + +A+ A  AKS FLA +SHEIRTPMN VLGML +L  T LD
Sbjct: 870  INRDITEQLELEHRLREERTRADLASQAKSSFLANMSHEIRTPMNAVLGMLQLLQRTALD 929

Query: 292  VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 351
              Q DY+  AQ + ++L+ L+N+VLD +K+E+GKL+L+   F+L  +L ++  + SG S 
Sbjct: 930  ARQGDYLTKAQQAARSLLGLLNDVLDYSKIEAGKLQLDVHPFSLEQVLRNLGVVLSGNSG 989

Query: 352  DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 411
            +K VE+  ++   +P  LIGD  R +QI+ NL GN++KFTE G + V+V           
Sbjct: 990  EKNVEINYHLDAGLPTALIGDSLRLQQILINLAGNALKFTEAGQVLVSV----------- 1038

Query: 412  VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 471
               +LS +   L                                    L  SV+DTG GI
Sbjct: 1039 --RQLSRADGQL-----------------------------------RLEFSVQDTGIGI 1061

Query: 472  PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 531
                Q ++F  F Q   SISR  GGTG+GL+I K LV  M G++   S   +GS F F A
Sbjct: 1062 SPAQQEQLFQGFTQAEASISRRFGGTGLGLAICKRLVELMDGQLQVESELGVGSRFWFDA 1121

Query: 532  VFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 591
                 S         Q   Q   V       + L+ D   +  +V    +  LG QV++V
Sbjct: 1122 ALAVDS---------QGEAQLAPVRR-----RVLLADDNTLVGEVLVETLAALGWQVDLV 1167

Query: 592  SDQLQCLSQIASGSKI---INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 648
            +     L+++A   +       +L++   W        L    LR+     + K+ +L  
Sbjct: 1168 TSGAAALARVAQAQQQAQPYEAVLMD---WRMPDGDGLLAARQLRERQADNRPKVIMLTG 1224

Query: 649  SISS--SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL 706
                  + A  S D       + KP+  + +   ++RA+G      +    +   S  H 
Sbjct: 1225 FGRDFLTEAQQSDDA-PFDDYLTKPVTPAQIVEVVERALGAEIPAGVHAAAVVDES--HR 1281

Query: 707  LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
            L G ++L+V+DN +N +VAA  L   GA V   E G +  E ++     D   MD+QMP+
Sbjct: 1282 LAGLRLLVVEDNALNRQVAAELLLAQGAQVELAEGGLQGVERVLSGGPLDVVIMDMQMPD 1341

Query: 767  MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG 826
            +DG EAT+ IR      + R R                +PILAMTA+      + CL +G
Sbjct: 1342 IDGLEATRRIRA-----DQRFR---------------TLPILAMTANASHTDRDACLAAG 1381

Query: 827  MDGYVSKPFEAEQLYREVSRF 847
            MD ++ KP + E L   + R 
Sbjct: 1382 MDDHIGKPIDLELLVARLRRL 1402


>gi|359463382|ref|ZP_09251945.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris sp. CCMEE 5410]
          Length = 755

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 188/603 (31%), Positives = 284/603 (47%), Gaps = 92/603 (15%)

Query: 260 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
           K  FLA +SHEIRTPMNGV+GM  +L+DTEL   QQ+Y  T + SG +L++LIN++LD +
Sbjct: 236 KDDFLAMMSHEIRTPMNGVIGMTGLLLDTELTPQQQEYTETIRKSGDSLLTLINDILDYS 295

Query: 320 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
           K+E+GKL+LE  +FN+R  ++D L L + +   K +ELA  +   VP+ ++GD  R RQI
Sbjct: 296 KIEAGKLDLEKQAFNVRVCVEDALELVASRVGPKEIELAGVVEPDVPQAILGDVTRLRQI 355

Query: 380 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
           + NL+GN+IKFT+ G + V V                                       
Sbjct: 356 LVNLLGNAIKFTQSGEVVVNV--------------------------------------- 376

Query: 440 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
                 S  PF + +  L  L  +V DTG GIP E Q+R+F  F QV  S +R  GGTG+
Sbjct: 377 ------SAEPFAADTP-LYELSFAVRDTGMGIPAERQNRLFKSFSQVDSSTTRKFGGTGL 429

Query: 500 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 559
           GL+I K L   M G I   S    GSTF FT       +   E  +    + P   +   
Sbjct: 430 GLAICKRLSELMGGRIWVESEEGQGSTFAFTI-----QAEETEDTTVVAQSLP---AVTL 481

Query: 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE 619
           +  + LVVD      +V     +   ++ +V +   + L  +       ++ +++ ++ E
Sbjct: 482 KDKRVLVVDDNDTNQRVLTLQTESWKMKPQVAASGYEALGLLEHAGP-FDIAILDMQMPE 540

Query: 620 KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM-KPLRSSMLA 678
            D          +R    G    + +L    S  +A       S+ S  + KP++ S L 
Sbjct: 541 MD---GLTLAQKIRSHPRGANFPMVMLT---SIGQAPDLAHHKSLFSAWLNKPIKQSQLY 594

Query: 679 ASLQRAMGVGNKGNIRNWELPS----MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGA 734
            +L +++  GN+   ++   P     M+ RH L   KIL+ +DN VN K+A   L + G 
Sbjct: 595 NALVKSL-TGNEVKTQSSTAPQLDTEMADRHPL---KILLAEDNPVNQKLAVLILAKMGY 650

Query: 735 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSI 794
               V  G +  + L     +D   MD+ MPEMDG  AT  I                  
Sbjct: 651 RPDVVGNGLEVLQAL-KRQSYDVILMDVNMPEMDGLTATTHI------------------ 691

Query: 795 EAYENVSNFHVP-ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIPD 853
             Y++V +   P I+AMTA+ +Q   E+CL  GMD YV+KP   ++L   +    P   +
Sbjct: 692 --YQSVMSEERPRIIAMTANAMQGDREKCLDVGMDDYVTKPINIQELVVALENSEPRTTE 749

Query: 854 RSP 856
             P
Sbjct: 750 SQP 752


>gi|218547698|ref|YP_002381489.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii ATCC
           35469]
 gi|422807992|ref|ZP_16856420.1| hsp90-like protein [Escherichia fergusonii B253]
 gi|424815154|ref|ZP_18240305.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii
           ECD227]
 gi|218355239|emb|CAQ87846.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia fergusonii ATCC 35469]
 gi|324111190|gb|EGC05173.1| hsp90-like protein [Escherichia fergusonii B253]
 gi|325496174|gb|EGC94033.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii
           ECD227]
          Length = 918

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 189/615 (30%), Positives = 288/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 TIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKGDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE+G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTERGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    ++  P       S Y I  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVIYSPTFSALPESHYDIMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + +  E  +K  +++      L  L C  Q            +   
Sbjct: 592 --------------LTLHHERLDKAVAMTDFL---LLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              +GV   + ++KPL S+ L  +L+     GNK  I +      S     L   ++ VD
Sbjct: 624 LKQEGVG--ACLLKPLTSTRLLPALKE---FGNKNQIHSLS----STDENKLAMTVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDKVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|442609645|ref|ZP_21024381.1| hypothetical protein PALB_13100 [Pseudoalteromonas luteoviolacea B =
            ATCC 29581]
 gi|441748889|emb|CCQ10443.1| hypothetical protein PALB_13100 [Pseudoalteromonas luteoviolacea B =
            ATCC 29581]
          Length = 1387

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 186/613 (30%), Positives = 297/613 (48%), Gaps = 98/613 (15%)

Query: 251  KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 310
            KKAE A   KS+FLA +SHEIRTPMNGVLGMLD+L  + L   Q      A +S  +L++
Sbjct: 855  KKAEEATKLKSEFLANMSHEIRTPMNGVLGMLDLLKSSSLTSEQAHAAEIASSSANSLLT 914

Query: 311  LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 370
            LIN++LD +K+E+ KLELE + F+LR ++  +    +  +Q+K VEL + +++   + + 
Sbjct: 915  LINDILDFSKIEADKLELELIDFDLRQLISHLAQSMALTAQNKNVELILDLAEMEVDEVH 974

Query: 371  GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 430
             DPGR RQ++TN++ N+IKFTE G+I +TV L +                          
Sbjct: 975  SDPGRIRQVLTNILSNAIKFTEHGYIKLTVKLTK-------------------------- 1008

Query: 431  RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 490
                           S SP +       + +  +ED+G GIP E  S +F  F QV  S 
Sbjct: 1009 ---------------SDSPLQ------YDFVCQIEDSGIGIPSEKLSTLFDAFSQVDAST 1047

Query: 491  SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 550
            +R +GGTG+GLSI+K L   +KG++   S    GS F    +  + S +S    +  + N
Sbjct: 1048 TRKYGGTGLGLSITKRLCQLLKGDVSVSSQLGSGSCFEIRLLLNDASKSSQVQTTSLVTN 1107

Query: 551  QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSDQLQCLSQIASGSKI 607
                       +  LV D       V R  +Q+L ++V     + + + C  Q     + 
Sbjct: 1108 -----------VHVLVADRCEHVCTVVRKELQKLSVRVSESNSLENAVACYQQYRDSDES 1156

Query: 608  INMILVEQEVWEKD-TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
            I+++L++ ++   +  S++ +F +  +      ++KL  +        ANT  +   +  
Sbjct: 1157 IDLVLLDVKLVPPNLDSIAPMFKSKKQ----SHKTKLVFMTRLNDQFDANTLIEK-GVDG 1211

Query: 667  VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL------GRKILIVDDNNV 720
               KP+  S L  +L    G      + N E+ + S +   +        ++L+V+DN V
Sbjct: 1212 HFAKPVTLSHLHYALGIIHGEAACA-LENAEVTTKSEKAEQVNDIDVSNAQVLLVEDNKV 1270

Query: 721  NLKVAAAGLKRYGAAVVCVERGKKATELL---MPPHQFDACFMDIQMPEMDGFEATKIIR 777
            N  VA   L   G  V   E G +A ++L       +F+   MD QMP MDG+EAT    
Sbjct: 1271 NQIVALRILNELGVVVTVAENGVEALQILNDARDERRFNVILMDCQMPLMDGYEATY--- 1327

Query: 778  EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
                    +IR G    E Y+      +P++AMTA+ +Q   ++CL +GMD Y+SKP + 
Sbjct: 1328 --------KIRDGHAGHE-YKT-----IPVIAMTANAMQGDKQKCLDAGMDDYISKPIDT 1373

Query: 838  ----EQLYREVSR 846
                E+L   +SR
Sbjct: 1374 SLLKEKLRSWISR 1386


>gi|171060737|ref|YP_001793086.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778182|gb|ACB36321.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1333

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 179/612 (29%), Positives = 285/612 (46%), Gaps = 96/612 (15%)

Query: 252  KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
            +AE A  AKS FLA +SHEIRTPMN ++G+  ++     D  Q++ +    ++ K L+ +
Sbjct: 679  EAEGATRAKSAFLANMSHEIRTPMNAIIGLTHLMARDTRDSLQRERLGKIDSAAKHLLQI 738

Query: 312  INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
            IN+VLD +K+++GKL LE   FNL  +L     L    + +KG+EL V  +DR+P  L G
Sbjct: 739  INDVLDLSKIDAGKLVLEDTEFNLDEVLSRAFELVGESANEKGLEL-VLDTDRLPSHLRG 797

Query: 372  DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
            DP R  Q + NL+ N++KFT  G + +   L+ E    ++V  E                
Sbjct: 798  DPTRLSQALINLLANAVKFTHAGWVRLRGELLAEDRQRVQVRFE---------------- 841

Query: 432  CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
                                            V+DTG+GI  E    +F  F Q   S +
Sbjct: 842  --------------------------------VQDTGEGIEPERFGSLFNAFEQADASTT 869

Query: 492  RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 551
            R HGGTG+GL+++++LV  M GE+G  S P +GSTF FTA  G  +              
Sbjct: 870  RRHGGTGLGLALTQHLVTLMGGEMGVRSEPGVGSTFWFTAWLGRAAEAGE---------- 919

Query: 552  PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA---SGSKII 608
              + +   QG++AL+VD  P         +Q  G++++ +      L ++    S  +  
Sbjct: 920  -RASAVPLQGLRALLVDDLPEALSAIGDRLQHFGLRIDPLDSGTAALQRVRSEISAGRPY 978

Query: 609  NMILVEQEVWEKDTSVSTLFVNNLRK-LGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
            ++ L++   W  +       +  LR+ LG G      +L  + +++       GV   +V
Sbjct: 979  DVFLID---WRMEPLDGIETMRQLRELLGAGMPPA--ILVTAFNNTAMWQQARGVQADAV 1033

Query: 668  IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL---LGRKILIVDDNNVNLKV 724
            ++KP+ +S L  +L R +   +         P      LL    G+++L+ +DN +N +V
Sbjct: 1034 LVKPITASALHDTLMRVLRSRSATRSAEPAPPGQGEAQLLRRHAGQRVLLAEDNPINQEV 1093

Query: 725  AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
            A   L+  G  V     G  A EL      +D   MD+QMPEMDG  AT+ IR       
Sbjct: 1094 ANELLQGVGLVVETAVDGASAVELAC-SRAYDLILMDMQMPEMDGIAATRAIRA------ 1146

Query: 785  NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
             R+ R               +PI+AMTA+      + CL +GM+ +V+KP +   LY  +
Sbjct: 1147 -RLGRA--------------IPIVAMTANAFSEDRQACLDAGMNDHVAKPVDPGTLYATL 1191

Query: 845  SRFFPPIPDRSP 856
             R+ P +  R+P
Sbjct: 1192 LRWLPLV--RTP 1201


>gi|386827544|ref|ZP_10114651.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
 gi|386428428|gb|EIJ42256.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
          Length = 1871

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 170/604 (28%), Positives = 297/604 (49%), Gaps = 94/604 (15%)

Query: 245  GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
             + E K+ AE+A+ +KS FLAT+SHEIRTPMNGV+GM  +L++T+L   Q+ Y+   ++S
Sbjct: 1196 ALREAKENAESANRSKSDFLATMSHEIRTPMNGVIGMTQLLLNTKLTSQQRHYIEIIRSS 1255

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
            G +L+++IN++LD +K+E+GKL L+ +  ++R ++DD++ LF+  +Q KG+EL   +   
Sbjct: 1256 GDSLLTVINDILDFSKIEAGKLVLDVIDGDIRQLVDDMMKLFAAPAQHKGIELLYELPAE 1315

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
             P  L  DP R RQI+ NL+GN+IKFTE+G++ + +   E   + ++++           
Sbjct: 1316 FPNYLRCDPLRLRQILNNLVGNAIKFTEEGYVLLKIQCDELTCEQVQLQ----------- 1364

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                                 V V DTG GI    +  +F PF 
Sbjct: 1365 -------------------------------------VDVIDTGIGISPLVRDNLFKPFT 1387

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   S SR +GGTG+GL I++ LV  M+G +G         +  +  +    + T     
Sbjct: 1388 QADSSTSRRYGGTGLGLVITRRLVEMMQGMMGICDTQTTRGSHFWVNLPLEKAETVPPVL 1447

Query: 545  SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQI 601
             + M        +   G++ L+V+   +  ++ +  +    +Q   V +    L+ L Q 
Sbjct: 1448 FENM--------AVLNGLRVLIVEDNLVHQQILQTELNHWQVQSYCVENAVLALESLIQY 1499

Query: 602  ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
                K  ++IL+++ + +   S++  F+ +++     F+    +L  ++     ++  + 
Sbjct: 1500 NELHKPYHLILLDETLMQSGESLT--FIKSVKN-DYRFKQIPIILMTTVQYELQSSLPEH 1556

Query: 662  VSIPSVIMKPLR-----SSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
            ++ P  + KP+R     +++L+ +      +     ++   LP  + R       +L+ +
Sbjct: 1557 LATP--LTKPIRQQDLLNALLSIATPHYSPIHTLSPLQTQPLPQHTCR-------LLLAE 1607

Query: 717  DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
            DN +N +VA   L++ G  V     G++A + L     FD   MD  MP MDGFEA+  I
Sbjct: 1608 DNIINQEVAKDMLQQLGCYVTIAHNGREALQRL-EQESFDLILMDCYMPYMDGFEASLRI 1666

Query: 777  REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
            RE E                   +S   VPI+A+TA+ +Q   E CL +GM+ Y+SKP  
Sbjct: 1667 RERE-----------------RCLSLPPVPIIALTANAMQGDRERCLSAGMNDYLSKPVI 1709

Query: 837  AEQL 840
             EQL
Sbjct: 1710 FEQL 1713


>gi|406877798|gb|EKD26920.1| Sensor protein [uncultured bacterium]
          Length = 1019

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 176/601 (29%), Positives = 295/601 (49%), Gaps = 91/601 (15%)

Query: 252  KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
            +A  A+ AK+ FLA +SHEIRTP+NG+LG L++  +T L   Q +Y+  A  S  +L+SL
Sbjct: 502  EASRANTAKTTFLANMSHEIRTPINGILGFLNLFKNTPLSHEQTEYINNALISTHSLLSL 561

Query: 312  INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
            IN++LD  K+ESG++ELE++ FN  +I++      +  + +K +E+  Y+   +   LIG
Sbjct: 562  INDILDFTKIESGRMELESIPFNPVSIIESSAKSLASTAHEKDLEILSYVDPNLHFNLIG 621

Query: 372  DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
            DP RF+QII NL+GN+IKFT+ G IF++  +  +  D++ V+T+                
Sbjct: 622  DPNRFKQIIINLLGNAIKFTQIGEIFISSSITRDSDDTVVVQTK---------------- 665

Query: 432  CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
                                            V DTG GI      R+F  F QV PS  
Sbjct: 666  --------------------------------VTDTGIGISQNHIQRLFHVFSQVDPSTH 693

Query: 492  RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS-QQMNN 550
            R +GG+G+GL+ISK  +  M GEI   SI   G+TFTF+  F      + +  + +++NN
Sbjct: 694  RKYGGSGLGLAISKRFIDLMGGEISVESIEGQGTTFTFSIPFRKVLGDNKKSQTIEKINN 753

Query: 551  QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI---ASGSKI 607
                + +    ++ L+           + +I  +G    + S Q +  + I      S  
Sbjct: 754  CDILILTNNNSVRNLL-----------KAYINFMGCPATIFSSQEEIKTHIQNNRLNSNR 802

Query: 608  INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK-LFLLANSISSSRANTSTDGVSIPS 666
             N+++V++ V +K       +++++  +      K LFLL ++    +  T+ + +    
Sbjct: 803  NNLLIVDEPVNDKS------YLDSIDDITRNTNIKSLFLLYSNSKRLQTITAANVIHRHL 856

Query: 667  VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
             ++KPL    L   +           ++N +  ++    L     IL+ +DN +NLK+  
Sbjct: 857  YLIKPLNFLDLYKIISSNKPETVFSPLKNIKTETVIKEKLYKDINILVAEDNKINLKLIV 916

Query: 727  AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
              L+++G  VV VE GK A +  +    F+A  MD  MPEMDG+EATK IR  E      
Sbjct: 917  ILLRKFGFNVVAVENGKLAYDAFLKS-DFNAIIMDCHMPEMDGYEATKQIRNTE------ 969

Query: 787  IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
              +G              +PI+A+TA+V++    +CL +GM+  + KP + E ++  +  
Sbjct: 970  --KGR------------DIPIIALTANVMKENINKCLEAGMNECLGKPIDPELVFNTLKF 1015

Query: 847  F 847
            F
Sbjct: 1016 F 1016


>gi|167623151|ref|YP_001673445.1| hybrid sensory histidine kinase BarA [Shewanella halifaxensis
           HAW-EB4]
 gi|167353173|gb|ABZ75786.1| Hpt sensor hybrid histidine kinase [Shewanella halifaxensis
           HAW-EB4]
          Length = 929

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 187/605 (30%), Positives = 281/605 (46%), Gaps = 101/605 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    L+ T L  +QQDY+RT + S   L+
Sbjct: 291 KKRAQEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHSSQQDYIRTIERSATNLL 350

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN++LD +K+E+GK+ LE + F+LR  L++ ++L S  +++K +E  + +  R+PE +
Sbjct: 351 SIINDILDFSKLEAGKMVLENIPFSLRETLEETVTLLSSSAREKELEFVIDVDSRIPEDV 410

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GD  RF QIITNL+GN+IKFT+KG + + + L E                  +    V 
Sbjct: 411 TGDAMRFSQIITNLVGNAIKFTDKGSVQLKLQLEE------------------IKEQKVH 452

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
            RC                               + DTG GI  + QS +F  F Q   S
Sbjct: 453 LRCE------------------------------IIDTGIGIDKQQQSSLFQAFGQADSS 482

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR  GGTG+GL I+K L+ RM G+IG  S P  GSTF F+             N  Q  
Sbjct: 483 ISRRFGGTGLGLVITKRLINRMGGQIGCYSEPKQGSTFWFSLPL----------NISQYP 532

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
                  +  +G   L+ +P  +        +QRLG++  +  +  Q    +   + + +
Sbjct: 533 IHDTLPLATLEGKSILLFEPSNLSRHAIERMLQRLGLRATIAKNIKQLEFIVTQSNNVFD 592

Query: 610 MILVE-QEVWEKDTSVSTLFVNN------LRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
             L+  + V       +TL +        L    C  Q ++F L       + +      
Sbjct: 593 FGLISCRAVAASHQPANTLKLAKSKIDYLLLISDCAEQEEVFSLVRPYVDKQLSMPVGER 652

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
            + S ++ P  SS+++ +L                 P+ + R  L    +L VDDN  NL
Sbjct: 653 LLSSSLLDP-HSSLISEALLPIDAT-----------PTPAKRENL---SVLAVDDNPANL 697

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
           K+    LK     V   + G+ A + L     +D  FMDIQMP  DG  ATK IR   HN
Sbjct: 698 KLIDTLLKELVTQVQVADNGELAVK-LAKERSYDLIFMDIQMPGTDGITATKQIR---HN 753

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
            +NR                 + PI+A+TA  I    E    SGMDGY+ KP +   L  
Sbjct: 754 SSNR-----------------NTPIIAVTAHAIAEERERISSSGMDGYLPKPIDEAALKG 796

Query: 843 EVSRF 847
            ++R+
Sbjct: 797 VITRW 801


>gi|386060172|ref|YP_005976694.1| sensor/response regulator hybrid [Pseudomonas aeruginosa M18]
 gi|347306478|gb|AEO76592.1| sensor/response regulator hybrid [Pseudomonas aeruginosa M18]
          Length = 925

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 191/617 (30%), Positives = 292/617 (47%), Gaps = 125/617 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +K+A  A   KS+FLA +SHEIRTP+NG+LG  ++L  +EL   QQDY+ T Q S ++L+
Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLTTIQKSAESLL 333

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +INE+LD +K+E+GKL LE + FNLR ++ D L++ +  + +K +EL   +    P  L
Sbjct: 334 GIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDTPIQL 393

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R +QI+TNL+GN+IKFT+ G + V   L +E                        
Sbjct: 394 QGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDE------------------------ 429

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                   S D   L +SV+DTG G+  E Q  +F  F Q   S
Sbjct: 430 ------------------------SDDRAQLRISVQDTGIGLSEEDQQALFKAFSQADNS 465

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           +SR  GGTG+GL ISK L+ +M GEIG  S P  G+ F  +              S+  N
Sbjct: 466 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSL---------PKSRDDN 516

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS--DQLQ-CLSQIASGSK 606
            +P   +S   G +  +++P+ +  +   + +   G++V   +  D LQ  L     G  
Sbjct: 517 EEPG--ASWAAGQRVALLEPQELTRRSLHHQLTDFGLEVSEFANLDSLQESLRNPPPGQL 574

Query: 607 IINMIL------------VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 654
            I++ +            + Q  WE              +LGC    K  +L  +   ++
Sbjct: 575 PISLAVLGVSAAIHPPEELSQSFWE------------FERLGC----KTLVLCPTTEQAQ 618

Query: 655 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR-HLLL-GR-- 710
            + +   +    V  KP  +  L   LQ  + V           P+ S + H ++ GR  
Sbjct: 619 YHAT---LPDEQVEAKPACTRKLQRKLQELLQVR----------PTRSDKPHAMVSGRPP 665

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
           ++L VDDN  NL +    L   GA V  V+ G  A E++    +FD  FMD+QMP MDG 
Sbjct: 666 RLLCVDDNPANLLLVQTLLSDLGAQVTAVDSGYAALEVVQ-RERFDLVFMDVQMPGMDGR 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
           +AT+ IR                 EA   VS   VP++A+TA  +       L++GMD Y
Sbjct: 725 QATEAIRRW---------------EAEREVSP--VPVIALTAHALSNEKRALLQAGMDDY 767

Query: 831 VSKPFEAEQLYREVSRF 847
           ++KP + +QL + V ++
Sbjct: 768 LTKPIDEQQLAQVVLKW 784


>gi|149912708|ref|ZP_01901242.1| sensor histidine kinase/response regulator [Roseobacter sp.
           AzwK-3b]
 gi|149813114|gb|EDM72940.1| sensor histidine kinase/response regulator [Roseobacter sp.
           AzwK-3b]
          Length = 728

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 192/614 (31%), Positives = 292/614 (47%), Gaps = 109/614 (17%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           + + +++AEAA+ AKS FLA +SHEIRTPMNGV+GM ++LMDT+L   Q  Y  T + SG
Sbjct: 202 LQDARRRAEAANHAKSSFLANMSHEIRTPMNGVVGMAELLMDTDLTEEQNLYANTIRKSG 261

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
           +AL+ +IN+VLD +K+E+ KL L    F+L   + +++ L    ++DK +EL V     +
Sbjct: 262 EALLVIINDVLDYSKIEAEKLHLHEEPFDLERTVHELVMLLQPNARDKELELLVDYDMFL 321

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
           P    GDPGR RQ++TNL+GN++KFTEKGH+ V V                        G
Sbjct: 322 PTRFHGDPGRIRQVLTNLIGNAVKFTEKGHVLVRVV-----------------------G 358

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI-NLIVSVEDTGQGIPLEAQSRIFTPFM 484
            P A                  +P     AD I +L ++VEDTG GI  + Q+ IF  F 
Sbjct: 359 MPAA------------------APESPEHADAIAHLRITVEDTGIGIAPDKQAHIFGEFN 400

Query: 485 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
           QV  + +R   GTG+GL+IS+ L+  M+G+I   S    GSTF  +          +E  
Sbjct: 401 QVEDAKNRRFEGTGLGLAISRKLIAMMQGDIWIGSEEGRGSTFGISLNL-----PVHERL 455

Query: 545 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
              M   P+S+       + L+VDP+ +   +    +  +G+ V   S   Q L    + 
Sbjct: 456 DPDMLRLPDSLR------RVLIVDPQDVSRTILEKQLASVGLDVRGCSSGAQALELCGA- 508

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
               ++IL E  +   D          LR+   G    + LL+     +  + +   +S 
Sbjct: 509 ---TDLILSEHHMPGMD---GMELAEALRE--AGQDVPIVLLSPFAGGTYVDPARPLLS- 559

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            +V+ KP   S L A+L +A              P    R +    ++L  +DN  N  V
Sbjct: 560 -AVLQKPATRSDLLAALHKAA-------------PPEPARPM----RVLAAEDNRTNRLV 601

Query: 725 AAAGLKRYGAAVVCVERGKKATEL---LMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
            ++ LK     +   E G++A +L   + P    D  FMDI MP MDG EAT  IR    
Sbjct: 602 FSSMLKDLNIELHFAEDGRQAVDLYGEVRP----DIVFMDISMPGMDGKEATAHIR---- 653

Query: 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
                         A E  +  HVPI+AMTA  + +   E L +G+D Y++KP   + + 
Sbjct: 654 --------------ALEKSTGRHVPIIAMTAHALGSDKTEILSAGLDHYMTKPLRKDAI- 698

Query: 842 REVSRFFPPIPDRS 855
             +      +P+R+
Sbjct: 699 --IEHILTALPERA 710


>gi|429094957|ref|ZP_19157463.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
           dublinensis 1210]
 gi|426739907|emb|CCJ83576.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
           dublinensis 1210]
          Length = 919

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 188/607 (30%), Positives = 296/607 (48%), Gaps = 110/607 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL V +   VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRNTLDEVVTLLAHSAHDKGLELTVSVRHDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFT+ G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S P+ GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++     +    GM+   V+     AK +R  +    + V V S +L  L Q    
Sbjct: 522 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLDNTPLTV-VYSPELATLPQAH-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
               +++L    V +++    T+  + L +        +  L      +      +G S 
Sbjct: 577 ---YDILLYAAPVTDREP--LTMRHDQLARAATLTDCLILALPCHAQINAEMLKKEGAS- 630

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KP+ ++ L   L     + +   I   ELP  S   L +   ++ VDDN  NLK+
Sbjct: 631 -ACLLKPVTATRLLPLL-----LEHCRQIHARELPEGSQGKLAM--TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
             A L+     VV  + G +A E   L P   FD   MDIQMP+MDG  A ++IR++   
Sbjct: 683 IGALLEDIVQHVVLCDSGHQAVERATLQP---FDIILMDIQMPDMDGIHACELIRKLPQ- 738

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                                H PI+A+TA  +    E+ L +GM+ Y++KP E E+L  
Sbjct: 739 -------------------QQHTPIIAVTAHAMSGQKEKLLSAGMNDYLAKPIEEEKLRA 779

Query: 843 EVSRFFP 849
            + R+ P
Sbjct: 780 LLLRYQP 786


>gi|15596125|ref|NP_249619.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|107100384|ref|ZP_01364302.1| hypothetical protein PaerPA_01001409 [Pseudomonas aeruginosa PACS2]
 gi|116048851|ref|YP_792348.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893103|ref|YP_002441972.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58]
 gi|254239279|ref|ZP_04932602.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719]
 gi|254245212|ref|ZP_04938534.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192]
 gi|296390719|ref|ZP_06880194.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1]
 gi|416858722|ref|ZP_11913491.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 138244]
 gi|416875649|ref|ZP_11918807.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 152504]
 gi|418583609|ref|ZP_13147678.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
 gi|418588974|ref|ZP_13152904.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P2]
 gi|421155575|ref|ZP_15615050.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
           14886]
 gi|421162461|ref|ZP_15621303.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
           25324]
 gi|421176074|ref|ZP_15633743.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CI27]
 gi|421182074|ref|ZP_15639559.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
 gi|421515550|ref|ZP_15962236.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
 gi|424940011|ref|ZP_18355774.1| sensor/response regulator hybrid [Pseudomonas aeruginosa NCMG1179]
 gi|451987425|ref|ZP_21935583.1| BarA sensory histidine kinase (= VarS = GacS) [Pseudomonas
           aeruginosa 18A]
 gi|9946832|gb|AAG04317.1|AE004527_4 sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|2623815|gb|AAB86557.1| two component sensor [Pseudomonas aeruginosa PAO1]
 gi|115584072|gb|ABJ10087.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171210|gb|EAZ56721.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719]
 gi|126198590|gb|EAZ62653.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192]
 gi|218773331|emb|CAW29143.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58]
 gi|334839207|gb|EGM17900.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 138244]
 gi|334841748|gb|EGM20370.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 152504]
 gi|346056457|dbj|GAA16340.1| sensor/response regulator hybrid [Pseudomonas aeruginosa NCMG1179]
 gi|375047217|gb|EHS39766.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
 gi|375052133|gb|EHS44592.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P2]
 gi|404349278|gb|EJZ75615.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
 gi|404520272|gb|EKA30952.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
           14886]
 gi|404531425|gb|EKA41380.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CI27]
 gi|404534541|gb|EKA44273.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
           25324]
 gi|404542794|gb|EKA52103.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
 gi|451755043|emb|CCQ88106.1| BarA sensory histidine kinase (= VarS = GacS) [Pseudomonas
           aeruginosa 18A]
 gi|453047953|gb|EME95666.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA21_ST175]
          Length = 925

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 191/617 (30%), Positives = 292/617 (47%), Gaps = 125/617 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +K+A  A   KS+FLA +SHEIRTP+NG+LG  ++L  +EL   QQDY+ T Q S ++L+
Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLTTIQKSAESLL 333

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +INE+LD +K+E+GKL LE + FNLR ++ D L++ +  + +K +EL   +    P  L
Sbjct: 334 GIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDTPIQL 393

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R +QI+TNL+GN+IKFT+ G + V   L +E                        
Sbjct: 394 QGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDE------------------------ 429

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                   S D   L +SV+DTG G+  E Q  +F  F Q   S
Sbjct: 430 ------------------------SDDRAQLRISVQDTGIGLSEEDQQALFKAFSQADNS 465

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           +SR  GGTG+GL ISK L+ +M GEIG  S P  G+ F  +              S+  N
Sbjct: 466 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSL---------PKSRDDN 516

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS--DQLQ-CLSQIASGSK 606
            +P   +S   G +  +++P+ +  +   + +   G++V   +  D LQ  L     G  
Sbjct: 517 EEPG--ASWAAGQRVALLEPQELTRRSLHHQLTDFGLEVSEFADLDSLQESLRNPPPGQL 574

Query: 607 IINMIL------------VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 654
            I++ +            + Q  WE              +LGC    K  +L  +   ++
Sbjct: 575 PISLAVLGVSAAIHPPEELSQSFWE------------FERLGC----KTLVLCPTTEQAQ 618

Query: 655 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR-HLLL-GR-- 710
            + +   +    V  KP  +  L   LQ  + V           P+ S + H ++ GR  
Sbjct: 619 YHAT---LPDEQVEAKPACTRKLQRKLQELLQVR----------PTRSDKPHAMVSGRPP 665

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
           ++L VDDN  NL +    L   GA V  V+ G  A E++    +FD  FMD+QMP MDG 
Sbjct: 666 RLLCVDDNPANLLLVQTLLSDLGAQVTAVDSGYAALEVVQ-RERFDLVFMDVQMPGMDGR 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
           +AT+ IR                 EA   VS   VP++A+TA  +       L++GMD Y
Sbjct: 725 QATEAIRRW---------------EAEREVSP--VPVIALTAHALSNEKRALLQAGMDDY 767

Query: 831 VSKPFEAEQLYREVSRF 847
           ++KP + +QL + V ++
Sbjct: 768 LTKPIDEQQLAQVVLKW 784


>gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
 gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
          Length = 916

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 178/605 (29%), Positives = 287/605 (47%), Gaps = 92/605 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K+ AEAA  AKS+FLAT+SHEIRTPMNG+LGM ++L+ T+L+  QQ +  T Q+SG+ L+
Sbjct: 259 KESAEAASKAKSEFLATMSHEIRTPMNGILGMTELLLQTQLNRDQQRFAETVQSSGRHLL 318

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV-YISDRVPET 368
            +IN++LD +K+ES  +ELE++ F+L  +++D L++F+  +  KG+ELA  +I       
Sbjct: 319 GIINDILDFSKIESDHMELESIDFDLVQLIEDTLAMFAQPADKKGLELAAQFIPPNRAFM 378

Query: 369 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 428
           + GD  R RQI  NL+ N+IKFT +G + +   L E     + +   +       +G  +
Sbjct: 379 VRGDSFRLRQIFANLISNAIKFTSQGEVVIRTQLCEAAGSRVNLRICVED-----TGIGI 433

Query: 429 ADRCHSWKGFKTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487
               H  K F+ F+Q DGST                                        
Sbjct: 434 PPEYHK-KIFQQFSQADGST---------------------------------------- 452

Query: 488 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 547
              +R +GGTG+GL+I K L+  M G I   S P  G+ F              E ++ +
Sbjct: 453 ---TRQYGGTGLGLTICKKLLELMGGSIHIDSTPGQGTKFQINLEL--------EKSALE 501

Query: 548 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 607
             +QPN   ++  G++ LVVD      ++ R  +Q   IQ          L  +     I
Sbjct: 502 HAHQPN--ITDLAGIRILVVDDNQTNREILRLQLQNWKIQAVCTHSADHALFAMTKACNI 559

Query: 608 ---INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
               ++++++  + + D          +       ++++ +L  S        + D   I
Sbjct: 560 NEPYHLVILDMHMPKMD---GLQLAKKIHADPTLNKTRIMMLT-STHHDVTQLAKDNAGI 615

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
              + KP+R   L   +   MG      +   + P   L + L G  +L+ +DN VN +V
Sbjct: 616 LRYVNKPVRQKELIDIIMDVMGRNLDNPVAPIQNPPFILDYNLHG-SVLLAEDNPVNQEV 674

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
           A A L R G   V    GK+A +L+   H +D   MD QMP MDGFEAT  IR+   + N
Sbjct: 675 AKAMLSRLGLNTVIAHDGKQAVDLIR-NHHYDIILMDCQMPVMDGFEATAQIRQ---HLN 730

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                               +PI+A+TA+  +    +CL +GMD ++SKP+  +QL +++
Sbjct: 731 K-------------------IPIIALTANATEDDRTQCLNAGMDDFLSKPYTLDQLQQKI 771

Query: 845 SRFFP 849
            ++ P
Sbjct: 772 LQWLP 776


>gi|261250376|ref|ZP_05942951.1| sensory box histidine kinase/response regulator [Vibrio orientalis
           CIP 102891 = ATCC 33934]
 gi|417953729|ref|ZP_12596772.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio orientalis CIP 102891 = ATCC
           33934]
 gi|260938945|gb|EEX94932.1| sensory box histidine kinase/response regulator [Vibrio orientalis
           CIP 102891 = ATCC 33934]
 gi|342816845|gb|EGU51738.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio orientalis CIP 102891 = ATCC
           33934]
          Length = 1199

 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 177/612 (28%), Positives = 298/612 (48%), Gaps = 96/612 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           + +A +A+ AKS FLA +SHEIRTPMN ++GM  + + T+L   Q++Y+   + S  +L+
Sbjct: 471 RDEANSANTAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQRNYIHKVKLSADSLL 530

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            LIN++LD +K+E+GKL++E V F+L  +LD++ +L   ++ ++G+EL ++I   VP TL
Sbjct: 531 GLINDILDFSKIEAGKLDIENVDFHLENVLDNITNLVGLRASERGLELLIHIERDVPTTL 590

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R  Q++ NL  N++KFTEKG I ++V + +   D +E+E                
Sbjct: 591 VGDPLRLGQVLINLANNAVKFTEKGEIKISVRVAKRQGDDVELE---------------- 634

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                            SVED+G G+  E   ++F+ F Q   S
Sbjct: 635 --------------------------------FSVEDSGIGMTKEQTDKLFSKFTQADSS 662

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R +GGTG+GL+ISK L   M G+I   S    GS F+F+       +T   H  +Q N
Sbjct: 663 TTRKYGGTGLGLAISKELSQLMGGDIRVESEFGQGSRFSFSI------ATKVSHALKQDN 716

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSK 606
               S+  E   +K L+VD       +    +  L  + + VS   D L  L   +    
Sbjct: 717 ---VSMPVELGKLKVLIVDDNASARIIVEDILHSLQFEAQSVSNVDDALNALETASQQQS 773

Query: 607 IINMILVEQEVWEKD-----TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD- 660
             ++++ + ++  KD      SV   F  N        Q K+ +L         +  T  
Sbjct: 774 PYDLLISDWQMPGKDGIDLVESVYQRFTEN-------HQPKILMLTAYGREDLNDAFTHR 826

Query: 661 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDN 718
           G++ PS++ KP+ +S L  ++    GV N    R+       L ++  L G  +L+V+DN
Sbjct: 827 GLTTPSILDKPVTASHLFDAVIALYGVANTRISRSEAQEQHQLANVQQLAGAHLLLVEDN 886

Query: 719 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
            +N ++A   L+     V     G++A +     H FD   MD QMP MDG+EAT+ IR 
Sbjct: 887 AINQELAVELLQGQQIKVTIAVNGQEAVD-YYKQHDFDGILMDCQMPIMDGYEATQFIR- 944

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                              + + +  +PI+AMTA+V++    +   +GM+  ++KP +  
Sbjct: 945 -------------------QTLDDQMMPIIAMTANVMERDKVKAQNAGMNDIIAKPIDVG 985

Query: 839 QLYREVSRFFPP 850
            ++  ++++  P
Sbjct: 986 SMFSTLAKWVTP 997


>gi|421169703|ref|ZP_15627710.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
           700888]
 gi|404525842|gb|EKA36090.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
           700888]
          Length = 925

 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 191/617 (30%), Positives = 292/617 (47%), Gaps = 125/617 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +K+A  A   KS+FLA +SHEIRTP+NG+LG  ++L  +EL   QQDY+ T Q S ++L+
Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLTTIQKSAESLL 333

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +INE+LD +K+E+GKL LE + FNLR ++ D L++ +  + +K +EL   +    P  L
Sbjct: 334 GIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDTPIQL 393

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R +QI+TNL+GN+IKFT+ G + V   L +E                        
Sbjct: 394 QGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDE------------------------ 429

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                   S D   L +SV+DTG G+  E Q  +F  F Q   S
Sbjct: 430 ------------------------SDDRAQLRISVQDTGIGLSEEDQQALFKAFSQADNS 465

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           +SR  GGTG+GL ISK L+ +M GEIG  S P  G+ F  +              S+  N
Sbjct: 466 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSL---------PKSRDDN 516

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS--DQLQ-CLSQIASGSK 606
            +P   +S   G +  +++P+ +  +   + +   G++V   +  D LQ  L     G  
Sbjct: 517 EEPG--ASWAAGQRVALLEPQELTRRSLHHQLTDFGLEVSEFADLDSLQESLRNPPPGQL 574

Query: 607 IINMIL------------VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 654
            I++ +            + Q  WE              +LGC    K  +L  +   ++
Sbjct: 575 PISLAVLGVSAAIHPPEELSQSFWE------------FERLGC----KTLVLCPTTEQAQ 618

Query: 655 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR-HLLL-GR-- 710
            + +   +    V  KP  +  L   LQ  + V           P+ S + H ++ GR  
Sbjct: 619 YHAT---LPDEQVEAKPACTRKLQRKLQELLQVR----------PTRSDKPHAMVSGRPP 665

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
           ++L VDDN  NL +    L   GA V  V+ G  A E++    +FD  FMD+QMP MDG 
Sbjct: 666 RLLCVDDNPANLLLVQTLLSDLGAQVTAVDSGYAALEVVQ-RERFDLVFMDVQMPGMDGR 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
           +AT+ IR                 EA   VS   VP++A+TA  +       L++GMD Y
Sbjct: 725 QATEAIRRW---------------EAEREVSP--VPVIALTAHALSNEKRALLQAGMDDY 767

Query: 831 VSKPFEAEQLYREVSRF 847
           ++KP + +QL + V ++
Sbjct: 768 LTKPIDEQQLAQVVLKW 784


>gi|85712454|ref|ZP_01043503.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
           [Idiomarina baltica OS145]
 gi|85693732|gb|EAQ31681.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
           [Idiomarina baltica OS145]
          Length = 868

 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 172/605 (28%), Positives = 289/605 (47%), Gaps = 82/605 (13%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           M + K+ AE A+VAK +FLA +SHEIRTP+N ++GM ++ + T+L   Q+ Y++   +S 
Sbjct: 194 MEQAKESAEQANVAKGEFLANMSHEIRTPINAIVGMANLCLKTQLSEKQKRYIKVIDSSS 253

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
           +AL+ +IN++LD +K+++GKL +E + F+L+ +L  +  +F+ K+ DK +E  + +   +
Sbjct: 254 QALLGVINDILDFSKIDAGKLSIERIPFDLQDVLTSLADMFAYKAYDKDLEFIINLPANI 313

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
           P  L GDP R  Q++ NL+ N+IKFTE G I V V L++               KNT   
Sbjct: 314 PTRLFGDPLRLNQVLVNLVSNAIKFTEDGEINVAVTLLD---------------KNT--- 355

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                         D + L +SV DTG G+  E ++ +F  F Q
Sbjct: 356 ------------------------------DKVWLRISVTDTGIGMDEEQRANLFKAFTQ 385

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
              S +R +GGTG+GL+IS+ L+  M G+IG  S    GSTF             + H+ 
Sbjct: 386 ADSSTTRKYGGTGLGLAISRRLIQLMGGDIGVTSGVGQGSTFYIELTLPMQPEQDDSHH- 444

Query: 546 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
                    +  + +G + L +D      ++ +  ++   + V V     Q L  +    
Sbjct: 445 -------QYLIQKLRGKRVLAIDDNLSTREMIQEMLRSYQVDVRVCRTAEQALDILREDL 497

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
           +  +++LV+   W +   +  L +          ++   +LA    +   +       I 
Sbjct: 498 EPYDVLLVD---W-RLPGMDGLSLCQRVYQSLASEAPKMILATGYYAEEMSEQAAAAGIS 553

Query: 666 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 725
            ++ KP  ++ L  SL   +      +I + + P+ +L   + G  IL+V+DN +N +VA
Sbjct: 554 DILSKPFTATTLGHSLATTL-YKRDDSISSKDAPATNLPDAIQGAPILLVEDNEINQQVA 612

Query: 726 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785
              LK  G  V   E G+ A + +    Q+    MDIQMP MDG  A K IR        
Sbjct: 613 LELLKSQGFKVDIAEHGQAALDAI-EQKQYALVLMDIQMPVMDGLTAAKKIR-------- 663

Query: 786 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 845
                  S   Y+      +PILAMTA+ +    E  L +GM G+++KP + +QL + + 
Sbjct: 664 -------SYYDYK-----QLPILAMTANAMSGDEERSLSAGMQGHIAKPIDEKQLIKAII 711

Query: 846 RFFPP 850
           ++  P
Sbjct: 712 KWCVP 716


>gi|2463029|emb|CAA74020.1| sensory kinase [Pectobacterium carotovorum subsp. carotovorum]
 gi|385873230|gb|AFI91750.1| Signal transduction histidine-protein kinase BarA [Pectobacterium
           sp. SCC3193]
          Length = 928

 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 188/612 (30%), Positives = 289/612 (47%), Gaps = 118/612 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T L+ TQ DY+ T + S   L+
Sbjct: 280 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLNTTQTDYLLTIERSANNLL 339

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F+L + LDDV+ L +  + +KG+EL + I + VPE  
Sbjct: 340 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQY 399

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +QIITNL+GN+IKFTE+G+I + V    +    +++E                
Sbjct: 400 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLE---------------- 443

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                           V + DTG GI    QS++F  F Q   S
Sbjct: 444 --------------------------------VQICDTGIGIAELQQSQLFQAFRQADTS 471

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S  N GSTF F             H +  +N
Sbjct: 472 ISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWF-------------HITLPLN 518

Query: 550 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             P++V  E      QG     V+  PI A+ +   + +  + V           Q+  G
Sbjct: 519 --PHTVPIEPVYTMLQGKHLAYVEYHPIAAQATLDILSQTPLMVSYSP----TFEQLPEG 572

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
               +++L+      ++T +   +   LR + C     + L   S++   A        +
Sbjct: 573 E--FDILLLAIPAQYRNTLLD--YTPRLRDI-CRRAPCVILALPSLAQMDAE-QLKAFGV 626

Query: 665 PSVIMKPLRSSMLAASLQRAM----------GVGNKGNIRNWELPSMSLRHLLLGRKILI 714
            + + KPL +S L   LQ +              ++G +R+   P+       L   ++ 
Sbjct: 627 HACLSKPLAASRLLPLLQNSTLFQLSFLPSDTTSHQGTVRH---PAR------LPLSVMA 677

Query: 715 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATK 774
           VDDN  NLK+    L+     ++  E G +A       HQ D   MDIQMP MDG  A++
Sbjct: 678 VDDNPANLKLIGTLLEEQVDTIILCESGTEAIA-QAKMHQIDIILMDIQMPGMDGICASE 736

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +IR++ H+                       PI+A+TA  +    E  L SGMD Y++KP
Sbjct: 737 LIRQIPHHAT--------------------TPIIAVTAQTMTGEREHLLSSGMDDYLAKP 776

Query: 835 FEAEQLYREVSR 846
            + + L   ++R
Sbjct: 777 IDEQMLKSVLTR 788


>gi|343497197|ref|ZP_08735273.1| two-component system sensor protein [Vibrio nigripulchritudo ATCC
           27043]
 gi|342819664|gb|EGU54503.1| two-component system sensor protein [Vibrio nigripulchritudo ATCC
           27043]
          Length = 1063

 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 194/663 (29%), Positives = 311/663 (46%), Gaps = 124/663 (18%)

Query: 212 ISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKK---KAEAADVAKSQFLATVS 268
           +   IG+ +    +G I QAT+  I  + E      EL     KA+ A   KS FLA +S
Sbjct: 253 VPAEIGMTIFQ--LGDICQATL-FIRDITERKLAERELNAAMAKAKEAVEVKSMFLANMS 309

Query: 269 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 328
           HEIRTPMN ++GM  + + T++   Q+DYV    +SG  L+ +IN++LD +K+E+GKLE+
Sbjct: 310 HEIRTPMNAIIGMAHLALKTDMSPKQRDYVSKIHSSGTLLLGIINDILDFSKIEAGKLEM 369

Query: 329 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 388
           E++ F L  +  +V ++   K+ +K +EL  +I   +P+ LIGDP R  Q+I NL+ NS+
Sbjct: 370 ESIEFTLDDVFRNVSTVTGQKAFEKNLELLFHIPRTIPQQLIGDPLRIGQVIINLVNNSV 429

Query: 389 KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 448
           KFTE+G I V+V L+E++ D IE+E            + VAD                  
Sbjct: 430 KFTEQGEITVSVDLLEQIGDRIELE------------FTVAD------------------ 459

Query: 449 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 508
                             TG G+  E  SR+FT F Q   S +R +GGTG+GLSI + LV
Sbjct: 460 ------------------TGIGMTREQSSRLFTAFTQADGSTTRKYGGTGLGLSICRRLV 501

Query: 509 GRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVD 568
             M G I   S P+ GS F F   F      ++  + +    +P+ +      +K L+VD
Sbjct: 502 ELMGGTIRVDSEPDEGSRFVFNVWFDLADQIASSKD-RLTALRPDMLDE----LKVLIVD 556

Query: 569 PRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLF 628
                 ++    ++ L IQ EV  +          G +  +M  VEQ + +++     L 
Sbjct: 557 DNRHAVEIMSEMLETLPIQPEVAHN----------GKEAFDM--VEQHIKDENPYSLVLM 604

Query: 629 VNNLRKLGCGFQSKLFLLAN-------------SISSSRANTSTDGVSIPSVIMKPLRSS 675
             N+ +L  G ++   +  N             +        +++ + I + + KP+  S
Sbjct: 605 DWNMPELN-GIETVSMMRDNIGNESLPKVVMVTAYDKDEVKKASNDIEIANYLTKPVSQS 663

Query: 676 MLAASL-------QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
            L   L        RA+ +  +  +R+ +           G ++L+ +DN +N ++A   
Sbjct: 664 SLYDCLIELFTDVDRALEIAEE--VRSEDNDEFK------GLRVLLTEDNEINQQIAFEL 715

Query: 729 LKRYGAAVVCVERGKKATELLMPPHQ----FDACFMDIQMPEMDGFEATKIIREMEHNFN 784
           +   G  V     GK+A E L    +    FD  FMD+QMP MDG+EA+K IR       
Sbjct: 716 MSGKGMEVTIANNGKEALEHLSESGEGEVPFDIMFMDLQMPVMDGYEASKRIR------- 768

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                         N     +P++AMTA  +    E CL  GM+ ++SKP + E LY+ +
Sbjct: 769 -------------SNCRYADIPLIAMTAHAMVEERERCLNLGMNDHISKPIDPETLYQLI 815

Query: 845 SRF 847
            ++
Sbjct: 816 RKW 818


>gi|392985595|ref|YP_006484182.1| sensor/response regulator hybrid [Pseudomonas aeruginosa DK2]
 gi|419753893|ref|ZP_14280291.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
           PADK2_CF510]
 gi|384399832|gb|EIE46197.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
           PADK2_CF510]
 gi|392321100|gb|AFM66480.1| sensor/response regulator hybrid [Pseudomonas aeruginosa DK2]
          Length = 925

 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 191/617 (30%), Positives = 292/617 (47%), Gaps = 125/617 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +K+A  A   KS+FLA +SHEIRTP+NG+LG  ++L  +EL   QQDY+ T Q S ++L+
Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLTTIQKSAESLL 333

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +INE+LD +K+E+GKL LE + FNLR ++ D L++ +  + +K +EL   +    P  L
Sbjct: 334 GIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDTPIQL 393

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R +QI+TNL+GN+IKFT+ G + V   L +E                        
Sbjct: 394 QGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDE------------------------ 429

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                   S D   L +SV+DTG G+  E Q  +F  F Q   S
Sbjct: 430 ------------------------SDDRAQLRISVQDTGIGLSEEDQQALFKAFSQADNS 465

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           +SR  GGTG+GL ISK L+ +M GEIG  S P  G+ F  +              S+  N
Sbjct: 466 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSL---------PKSRDDN 516

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS--DQLQ-CLSQIASGSK 606
            +P   +S   G +  +++P+ +  +   + +   G++V   +  D LQ  L     G  
Sbjct: 517 EEPG--ASWAAGQRVALLEPQELTRRSLHHQLTDFGLEVSEFADLDSLQESLRNPPPGQL 574

Query: 607 IINMIL------------VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 654
            I++ +            + Q  WE              +LGC    K  +L  +   ++
Sbjct: 575 PISLAVLGVSAAIHPPEELSQSFWE------------FERLGC----KTLVLCPTTEQAQ 618

Query: 655 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR-HLLL-GR-- 710
            + +   +    V  KP  +  L   LQ  + V           P+ S + H ++ GR  
Sbjct: 619 YHAT---LPDEQVEAKPACTRKLQRKLQELLQVR----------PTRSDKPHAMVSGRPP 665

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
           ++L VDDN  NL +    L   GA V  V+ G  A E++    +FD  FMD+QMP MDG 
Sbjct: 666 RLLCVDDNPANLLLVQTLLSDLGAQVTAVDSGYAALEVVQ-RERFDLVFMDVQMPGMDGR 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
           +AT+ IR                 EA   VS   VP++A+TA  +       L++GMD Y
Sbjct: 725 QATEAIRRW---------------EAEREVSP--VPVIALTAHALSNEKRALLQAGMDDY 767

Query: 831 VSKPFEAEQLYREVSRF 847
           ++KP + +QL + V ++
Sbjct: 768 LTKPIDEQQLAQVVLKW 784


>gi|332535352|ref|ZP_08411148.1| putative sensor protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035225|gb|EGI71733.1| putative sensor protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 1104

 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 190/640 (29%), Positives = 306/640 (47%), Gaps = 102/640 (15%)

Query: 218  ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 277
            ++ +A+L+G +  ++  RI    E    ++  K+ AE A  AKS+FLA++SHEIRTPMNG
Sbjct: 555  LIAVAALIGSL-HSSQQRI----ETEQKLVSAKETAEQAVEAKSEFLASMSHEIRTPMNG 609

Query: 278  VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337
            VLGML+++  T+LD+ Q+ ++  AQ+S ++L+++IN++LD +K+E+GKL++E V FNL  
Sbjct: 610  VLGMLNIIKQTQLDLQQKHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIENVQFNLPR 669

Query: 338  ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 397
            +L +V+  F+ K +    +L +  +      +I DP R RQI+ NL+GN++KFT  G + 
Sbjct: 670  LLGEVVESFALKVEQNNTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTIDGEVV 729

Query: 398  VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 457
            +T  + E                                       DGS           
Sbjct: 730  ITARIDETT-------------------------------------DGSF---------- 742

Query: 458  INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 517
              L  S+ DTG GI  + Q+ +F  F Q   S +R  GGTG+GL+I K L   M GE+  
Sbjct: 743  --LQCSIIDTGIGIDPKKQASLFDSFTQADASTTRQFGGTGLGLAIVKQLCELMNGEVSV 800

Query: 518  VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 577
             S+   GSTF+FT       S   +  S  + N+             L++D   + A  +
Sbjct: 801  NSMQGEGSTFSFTVQIQPRLSKEQDLPSHLIKNK-----------HILIIDECSLNANTA 849

Query: 578  RYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637
               +   G +V  + + L+    +++ +     ILV+   +EK        + N   +  
Sbjct: 850  NKQLTVWGAKVNCIHNYLEVDDYLSNVTTHPGAILVDYYFFEKAPQTHITALKNFINM-- 907

Query: 638  GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 697
                KL ++A    S     S  G+ +  +I KPL  S L  SL       N   I   +
Sbjct: 908  -HSCKLVIMAP--MSYSPEESKVGMEVDCMIFKPLTPSDLFDSLT------NDKYIEQQQ 958

Query: 698  LPSMSLRHLLLG-------RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 750
              +     L           ++L+V+DN +N  VA+A LK+ G      E G +A   L 
Sbjct: 959  QQAQLQNKLTKAPVLDSSEPQLLLVEDNKINQVVASALLKQAGVTFDIAENGLEAIVKLN 1018

Query: 751  PPH--QFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL 808
                  +    MD QMPEMDG++ATK IRE +   +N            EN++     I+
Sbjct: 1019 AKQGKPYKLVLMDCQMPEMDGYQATKAIREGDAGKDN------------ENIT-----II 1061

Query: 809  AMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            A+TA+ +Q   E+CL +GM+ Y+SKP +   L  ++ ++ 
Sbjct: 1062 ALTANAMQGDKEKCLAAGMNDYLSKPLDLAALQPKLQQWL 1101


>gi|313105812|ref|ZP_07792075.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016]
 gi|386064653|ref|YP_005979957.1| sensor/response regulator hybrid [Pseudomonas aeruginosa NCGM2.S1]
 gi|310878577|gb|EFQ37171.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016]
 gi|348033212|dbj|BAK88572.1| sensor/response regulator hybrid [Pseudomonas aeruginosa NCGM2.S1]
          Length = 925

 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 191/617 (30%), Positives = 292/617 (47%), Gaps = 125/617 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +K+A  A   KS+FLA +SHEIRTP+NG+LG  ++L  +EL   QQDY+ T Q S ++L+
Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLTTIQKSAESLL 333

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +INE+LD +K+E+GKL LE + FNLR ++ D L++ +  + +K +EL   +    P  L
Sbjct: 334 GIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDTPIQL 393

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R +QI+TNL+GN+IKFT+ G + V   L +E                        
Sbjct: 394 QGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDE------------------------ 429

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                   S D   L +SV+DTG G+  E Q  +F  F Q   S
Sbjct: 430 ------------------------SDDRAQLRISVQDTGIGLSEEDQQALFKAFSQADNS 465

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           +SR  GGTG+GL ISK L+ +M GEIG  S P  G+ F  +              S+  N
Sbjct: 466 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSL---------PKSRDDN 516

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD--QLQ-CLSQIASGSK 606
            +P   +S   G +  +++P+ +  +   + +   G++V   +D   LQ  L     G  
Sbjct: 517 EEPG--ASWAAGQRVALLEPQELTRRSLHHQLTDFGLEVSEFADLNSLQESLRNPPPGQL 574

Query: 607 IINMIL------------VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 654
            I++ +            + Q  WE              +LGC    K  +L  +   ++
Sbjct: 575 PISLAVLGVSAAIHPPEELSQSFWE------------FERLGC----KTLVLCPTTEQAQ 618

Query: 655 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR-HLLL-GR-- 710
            + +   +    V  KP  +  L   LQ  + V           P+ S + H ++ GR  
Sbjct: 619 YHAT---LPDEQVEAKPACTRKLQRKLQELLQVR----------PTRSDKPHAMVSGRPP 665

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
           ++L VDDN  NL +    L   GA V  V+ G  A E++    +FD  FMD+QMP MDG 
Sbjct: 666 RLLCVDDNPANLLLVQTLLSDLGAQVTAVDSGYAALEVVQ-RERFDLVFMDVQMPGMDGR 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
           +AT+ IR                 EA   VS   VP++A+TA  +       L++GMD Y
Sbjct: 725 QATEAIRRW---------------EAEREVSP--VPVIALTAHALSNEKRALLQAGMDDY 767

Query: 831 VSKPFEAEQLYREVSRF 847
           ++KP + +QL + V ++
Sbjct: 768 LTKPIDEQQLAQVVLKW 784


>gi|338972480|ref|ZP_08627853.1| two-component hybrid sensor and regulator [Bradyrhizobiaceae
           bacterium SG-6C]
 gi|338234265|gb|EGP09382.1| two-component hybrid sensor and regulator [Bradyrhizobiaceae
           bacterium SG-6C]
          Length = 757

 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 177/610 (29%), Positives = 283/610 (46%), Gaps = 106/610 (17%)

Query: 245 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            + E +  A AA+ AKS+FLA  SHEIRTP+NG++GM ++L+DT L   Q+ Y +  + S
Sbjct: 217 ALAEARDLANAANRAKSKFLAMASHEIRTPLNGIIGMSNLLLDTSLTAEQKTYAKAVKTS 276

Query: 305 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
           G AL++LI+E+LD +++E+GK++LE   F L A+++D+  L + ++Q + +E+A Y+ +R
Sbjct: 277 GDALMALIDELLDFSRIEAGKIDLEQRPFALAAMIEDITELLAPRAQARNLEIASYVDER 336

Query: 365 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
           +P  ++GD  R RQ++ NL GN+IKFT+ G +     +VE  +                 
Sbjct: 337 LPRQVLGDAARLRQVLLNLAGNAIKFTQSGGV---ALIVEPGI----------------- 376

Query: 425 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                     W G  +F                      V DTG GI  EAQ RIF  F 
Sbjct: 377 ----------WPGEISF---------------------IVRDTGIGIAPEAQQRIFREFE 405

Query: 485 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
           Q     +R +GGTG+GLSIS  +V RM G I   S    G+TF F+       +      
Sbjct: 406 QASEGTARNYGGTGLGLSISDRIVRRMGGHIALESTEGHGATFAFSIPLAAADT------ 459

Query: 545 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
               N+ P  ++ +  G   +++ P+ I A +    ++R G Q    +D    ++     
Sbjct: 460 ----NDAPAFIAPDLTGKSIMLMAPQSIEASLIARRLERWGAQTCTAAD--ISIAHALLP 513

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
            +  + +LV  +    DT         +R      +  +F  A      R  T     S 
Sbjct: 514 ERPWHAVLV--DCGSADTPWRDFGNAAVRH--SAHRIAMFTPAQ----RRDITPAMAASY 565

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW---ELPSMSLRHLLL-------GRKILI 714
              ++KPLR    AASL   + V +   ++     + P+  + H  +          IL+
Sbjct: 566 TGYLVKPLR----AASLAERLSVSSAAMLQELSGEDAPATDMAHSTMPPETASRALSILV 621

Query: 715 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ----FDACFMDIQMPEMDGF 770
            +DN +N  +  + L + G A V    G++A E  +        +D   MDIQMP++DG 
Sbjct: 622 AEDNEINALLIRSLLIKLGHAPVITTDGEQALESWIAADSAGTPYDVVLMDIQMPKLDGI 681

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            ATK IR  E   + R                    ILA+TA+ +      C  +GMDG+
Sbjct: 682 SATKRIRAHEAGRSPR-----------------RTTILALTANTLVDDRYACFEAGMDGF 724

Query: 831 VSKPFEAEQL 840
           + KP + ++L
Sbjct: 725 LIKPLDRDKL 734


>gi|117921856|ref|YP_871048.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
 gi|117614188|gb|ABK49642.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
          Length = 1767

 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 174/601 (28%), Positives = 294/601 (48%), Gaps = 91/601 (15%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++A+AA  AK  FLA +SHEIRTPMN ++GM  + + T LD  Q++YV   + + K+L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYVEKIERASKSLL 1089

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            S+IN++LD +K+E+GKL++E+V F L  +L+D+  +FS K+  K +EL   ++  VP  L
Sbjct: 1090 SIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPNVPRHL 1149

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GD  R  Q++ NLM N+IKFTE+G + +++ LVE+  D + +   +  S   L+     
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQNDDVVLRFSVRDSGIGLTA---- 1205

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                          D     FKS                              F Q   S
Sbjct: 1206 --------------DQQAKLFKS------------------------------FSQADTS 1221

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GL+I K LV  M G IG  S    GSTF FT               Q  +
Sbjct: 1222 TTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYFTVKL------------QISS 1269

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             Q  +V+ E +GM  LV D       + R  ++ +G +V+ V    + +++       + 
Sbjct: 1270 GQKLTVAQELEGMPILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVTRCIQQEYAVA 1329

Query: 610  MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
            +I      W+            +++     ++   L+ ++ ++    +  + + +   I 
Sbjct: 1330 LI-----DWKMPNLDGIETAKQIKQQAK--KAPRILMVSAHANQDFLSQIEELGLAGYIS 1382

Query: 670  KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNVNLKVAAA 727
            KP+ +S L   +  ++G      +R  +  S+  + L  L G++IL+V+DN +NL+VA  
Sbjct: 1383 KPISASRLLDGIINSLGRAGVLPVRR-QSESIDPKLLLPLKGKRILLVEDNEMNLEVATE 1441

Query: 728  GLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787
             L++ G  +     G+ A + L     FD   MD QMP MDG++AT+ +R          
Sbjct: 1442 FLEQVGIILSIATNGQIALDKL-EQQSFDLVLMDCQMPVMDGYQATQALR---------- 1490

Query: 788  RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
            +R E++           +P++AMTA+ +    E CLR+GM+ +++KP E   LY+ + ++
Sbjct: 1491 KRPELT----------ELPVVAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKY 1540

Query: 848  F 848
             
Sbjct: 1541 L 1541


>gi|440679909|ref|YP_007154704.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
 gi|428677028|gb|AFZ55794.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
          Length = 1543

 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 191/608 (31%), Positives = 289/608 (47%), Gaps = 99/608 (16%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            + +AE A +AKS FLA +SHEIRTPMN VLGM  +L++T L+  QQD+V T + SG AL+
Sbjct: 874  RHQAELASLAKSAFLANMSHEIRTPMNAVLGMTGLLLETALNREQQDFVETIRISGDALL 933

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            SLINE+LD +K+E+G++ELE + F+L + +++VL L + ++  KG+E+   I  +VP  L
Sbjct: 934  SLINEILDLSKLEAGEMELEHLDFDLSSCIEEVLDLLAPQAHHKGLEIGALIRRKVPIQL 993

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GD  R RQI+ NL+GN+IKFT +G + V V L+ E                        
Sbjct: 994  QGDASRLRQILMNLIGNAIKFTSEGEVVVQVELLSET----------------------- 1030

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                            +T+  K           S+ DTG GI  E Q ++F  F QV  S
Sbjct: 1031 ---------------ATTATIK----------FSITDTGIGITSEDQHKLFQAFSQVDAS 1065

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            I+R +GGTG+GL+I + LV  M GEIG  S    GS F F   F            Q   
Sbjct: 1066 ITRQYGGTGLGLAICRQLVNLMGGEIGVTSEIGQGSKFCFDLSF----------TKQLYF 1115

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSK 606
              P          + LVVD      K+  +   R G+QV+  ++     Q L   A+  K
Sbjct: 1116 ACPVKEPEILTNRRLLVVDDNDTNRKIVYHQATRWGMQVDEAANAQVAFQALQAAAAAGK 1175

Query: 607  IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
              ++ LV+ ++     +V  L +    K          ++  S +          +    
Sbjct: 1176 PYDIALVDMQM----PTVDGLTLGVQIKANDAIAHVPLIMLTSTNQRDEVQKALKIGFAG 1231

Query: 667  VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP----SMSLRHLLLGR--------KILI 714
             ++KP++ S L  ++   +    K N+ + ++     ++SL               ++L+
Sbjct: 1232 YLVKPVKPSRLFDTIMNILVA--KSNLNDHQISLISETLSLDQQFTQTTSFTKTNIRVLL 1289

Query: 715  VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEA 772
             +DN VN KVA   L+  G     V  G++   LL  +P   +D   MD QMP +DG + 
Sbjct: 1290 AEDNLVNQKVALKQLQTLGYIADTVSNGEEVLHLLETVP---YDLILMDCQMPVLDGLQT 1346

Query: 773  TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832
            T+ IR    +   R RR  V              I+AMTA+ ++   + CL +GM+GYVS
Sbjct: 1347 TRAIRNWPDSHFLR-RRQPV--------------IIAMTANAMKEDEQTCLNAGMNGYVS 1391

Query: 833  KPFEAEQL 840
            KP   E+L
Sbjct: 1392 KPVVKEKL 1399



 Score = 46.2 bits (108), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 24/140 (17%)

Query: 706  LLLGRKILIVDDNNVNLKVAAAGLKRYGA----AVVCVERGKKATELLMPPHQFDACFMD 761
            +L  R++L+VDDN+ N K+      R+G     A       +           +D   +D
Sbjct: 1124 ILTNRRLLVVDDNDTNRKIVYHQATRWGMQVDEAANAQVAFQALQAAAAAGKPYDIALVD 1183

Query: 762  IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 821
            +QMP +DG                      V I+A + ++  HVP++ +T+   +   ++
Sbjct: 1184 MQMPTVDGLTLG------------------VQIKANDAIA--HVPLIMLTSTNQRDEVQK 1223

Query: 822  CLRSGMDGYVSKPFEAEQLY 841
             L+ G  GY+ KP +  +L+
Sbjct: 1224 ALKIGFAGYLVKPVKPSRLF 1243


>gi|261822787|ref|YP_003260893.1| hybrid sensory histidine kinase BarA [Pectobacterium wasabiae
           WPP163]
 gi|261606800|gb|ACX89286.1| multi-sensor hybrid histidine kinase [Pectobacterium wasabiae
           WPP163]
          Length = 928

 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 190/609 (31%), Positives = 287/609 (47%), Gaps = 112/609 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T L+ TQ DY+ T + S   L+
Sbjct: 280 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLNTTQTDYLLTIERSANNLL 339

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F+L + LDDV+ L +  + +KG+EL + I + VPE  
Sbjct: 340 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQY 399

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +QIITNL+GN+IKFTE+G+I + V    +    +++E                
Sbjct: 400 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLE---------------- 443

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                           V + DTG GI    QS++F  F Q   S
Sbjct: 444 --------------------------------VQICDTGIGIAELQQSQLFQAFRQADTS 471

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S  N GSTF F             H +  +N
Sbjct: 472 ISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWF-------------HITLPLN 518

Query: 550 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             P++V  E      QG     V+  PI A+ +   + +  + V           Q+  G
Sbjct: 519 --PHTVPIEPVYTMLQGKHLAYVEYHPIAAQATLDILSQTPLMVSYSP----TFEQLPEG 572

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
               +++L+      ++T +   +   LR + C     + L   S++   A        +
Sbjct: 573 E--FDILLLAIPAQYRNTLLD--YTPRLRDI-CRRAPCVILALPSLAQMDAE-QLKAFGV 626

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH-------LLLGRKILIVDD 717
            + + KPL +S L   LQ      N    +   LPS +  H         L   ++ VDD
Sbjct: 627 HACLSKPLAASRLLPLLQ------NSTLFQLSFLPSDTTSHQGAVRHPARLPLSVMAVDD 680

Query: 718 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
           N  NLK+    L+     ++  E G +A       HQ D   MDIQMP MDG  A+++IR
Sbjct: 681 NPANLKLIGTLLEEQVDTIILCESGTEAIA-QAKMHQIDIILMDIQMPGMDGICASELIR 739

Query: 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
           ++ H+                       PI+A+TA  +    E  L SGMD Y++KP + 
Sbjct: 740 QIPHHAT--------------------TPIIAVTAQTMTGEREHLLSSGMDDYLAKPIDE 779

Query: 838 EQLYREVSR 846
           + L   ++R
Sbjct: 780 QMLKSVLTR 788


>gi|17230367|ref|NP_486915.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131969|dbj|BAB74574.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1817

 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 192/633 (30%), Positives = 300/633 (47%), Gaps = 112/633 (17%)

Query: 245  GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
             + + K+ AEAA+ AKS+FLA +SHEIRTPMN V+GM  +L+DTEL   Q+D+V T   S
Sbjct: 1125 ALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELTSQQRDFVETVLTS 1184

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
            G AL+S+IN++LD +K+ESGKLELE   F +R  ++ V+ L + K+  K +ELA  I  +
Sbjct: 1185 GDALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLIHPQ 1244

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            VP  + GD  R RQI+TNL+ N+IKFT +G + V+V                        
Sbjct: 1245 VPMQIAGDLTRLRQILTNLLNNAIKFTPEGEVVVSVR----------------------- 1281

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                   SP    + +   +I +++DTG GI  E    +F PF+
Sbjct: 1282 --------------------SQPSP-NQKNKNCCEIIFTIKDTGIGIAPETMDLLFQPFV 1320

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN---GSSTSN 541
            Q   S++R +GGTG+GL ISK L G M G  G++ + + G       V GN   G  T N
Sbjct: 1321 QADASMTRKYGGTGLGLVISKRL-GEMMG--GYLWVESRG------CVGGNPPPGWQTKN 1371

Query: 542  EHNSQQMNN-------------------QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 582
              +S  +                      P +   +  G + L+VD  P   ++ R   +
Sbjct: 1372 SISSASVATGSTFYFSMTVPVVAHADLETPITSPVQLSGKRLLIVDDNPTNRQILRLQAE 1431

Query: 583  RLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642
               ++        + L+ I  G    ++ +++ ++ E D          +R+        
Sbjct: 1432 PWQMETYTAPSGAEALALIDQGMA-FDIAILDVQMPEMD---GLTLARQIRQRPSYQHLP 1487

Query: 643  LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN---KGNI---RNW 696
            L +L    S  + +T    +   + + KP++ S L   L  A  +GN   + ++   R+ 
Sbjct: 1488 LVILT---SWGQPDTDLSDIEFAACLNKPIKQSQLYDVL--ASTLGNQPIRASVVPDRST 1542

Query: 697  ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 756
            E+ S   + + L  +IL+ +D  VN KVA   LK+ G     V  G +  E L     +D
Sbjct: 1543 EINSCLAQQIPL--RILLAEDIVVNQKVALLILKKMGYRADVVANGLEVLEALQRQF-YD 1599

Query: 757  ACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 816
               MD+ MPEMDG +A++II           +    S   Y         I+AMTA+ ++
Sbjct: 1600 VVLMDVNMPEMDGLKASQII----------CQTWSPSSRPY---------IIAMTANAMR 1640

Query: 817  ATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
               E CL +GMD Y+SKP + E+L + + +  P
Sbjct: 1641 GDREACLAAGMDHYISKPLQLEELAKALGKCHP 1673


>gi|317491023|ref|ZP_07949459.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920570|gb|EFV41893.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 913

 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 192/616 (31%), Positives = 287/616 (46%), Gaps = 117/616 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T L+ TQ DY++T + S   L+
Sbjct: 278 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKTPLNATQSDYLQTIERSANNLL 337

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F LR  +D+V  L +  + +KG+EL + I + VPE +
Sbjct: 338 TIINDVLDFSKLEAGKLVLEHIPFLLRETIDEVTVLLAPSAHEKGIELTLNIRNDVPEHV 397

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q++TNL+GN+IKFTEKG+I + V L       +E+E  +       +G  ++
Sbjct: 398 IGDPMRIQQVLTNLLGNAIKFTEKGNIDIRVELRSATPHQVELEVLVHD-----TGIGIS 452

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           +R  S                                           ++F  F Q   S
Sbjct: 453 ERQQS-------------------------------------------QLFQAFRQADAS 469

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F        +    H   Q  
Sbjct: 470 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNKGSTFWFHIQLELNHNAPQSHFPMQ-- 527

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
                      G K L ++  P+ A+ +   +Q   ++V         L+Q+   S   +
Sbjct: 528 --------RLAGQKLLYIESNPVAAQCTLDLLQATPLEVSYSP----LLAQVIPDSH-YD 574

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG-----VSI 664
           ++LV   V    TS  +     LRK        L L    I +  ++T  D        I
Sbjct: 575 ILLVGLPV--NFTSHDSQGEEKLRK-------ALSLADRVILAMPSHTLLDSDELKMRGI 625

Query: 665 PSVIMKPLRSS-----MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 719
            S + KPL S+     +L  SL +   V    N     L  M+            VDDN 
Sbjct: 626 RSCLSKPLTSNRLLPILLDNSLPKRAPVVIDHNAERLPLSVMA------------VDDNP 673

Query: 720 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
            NLK+  A L       +    G++A       H+ D   MDIQMPEMDG   +++IR++
Sbjct: 674 ANLKLIGALLGELVEQTILCNSGEEAIA-KAKEHRLDIILMDIQMPEMDGIRTSELIRKL 732

Query: 780 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
               +                     PI+A+TA  I    E  LR+GMD Y++KP +   
Sbjct: 733 PRYIDT--------------------PIIAVTAHAINGERERLLRAGMDDYLAKPIDENM 772

Query: 840 LYREVSRFF--PPIPD 853
           L + ++R++  P I D
Sbjct: 773 LRQLLARYYRSPEIQD 788


>gi|158338777|ref|YP_001519954.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158309018|gb|ABW30635.1| two-component hybrid sensor and regulator histidine kinase,
           putative [Acaryochloris marina MBIC11017]
          Length = 826

 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 178/604 (29%), Positives = 286/604 (47%), Gaps = 77/604 (12%)

Query: 244 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
             ++E  + A+AA++AKS+FLA +SHEIRTPMN V+GM D+L DT LD  QQD+V T + 
Sbjct: 294 QALLESSQAAQAANLAKSEFLAMISHEIRTPMNAVIGMTDLLKDTHLDPHQQDFVETIRT 353

Query: 304 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 363
           SG++L+++IN++LD +K+ESGKLELE   F +   +++ L + + K+  KG+ELA  I  
Sbjct: 354 SGESLLNIINDILDFSKIESGKLELELHPFPISTCVEEALDIVNSKATAKGLELAYLIEP 413

Query: 364 RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 423
             P  + GD  R RQI+ NL+GN++KFT  G + VT+   +     +  E  LS      
Sbjct: 414 GTPNHIQGDANRLRQILVNLLGNAVKFTADGEVIVTISARDVATAEMTPEVPLS------ 467

Query: 424 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483
                                            L  L+  V+DTG GI  E Q ++F  F
Sbjct: 468 ---------------------------------LHELLFEVKDTGIGIAPEHQQKLFQSF 494

Query: 484 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 543
            Q+  SI+R +GGTG+GL+ISK L   M G I   S   IGS+F FT +  +      +H
Sbjct: 495 CQLDSSITREYGGTGLGLAISKQLCELMGGTIWVESQVGIGSSFFFT-MAASALPGPEDH 553

Query: 544 NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 603
            + +          +FQ  + L+V+      ++    +Q  G+   + S  L+ L+ +  
Sbjct: 554 RATE---------PQFQNKRVLIVEDNASTGQILCQQVQAWGLVPTLASSGLEALAWVKK 604

Query: 604 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
               + +  ++         +S L  N++        + L ++        A        
Sbjct: 605 ERFDVAIADLQLPTMTWSRLLSELTQNHIH-------APLPIIGLCAIGESAAVWQYQPL 657

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 723
           + + + KP++   L  +L +A+   ++ ++    +     +      +IL+ +DN +N K
Sbjct: 658 LSASLSKPVKQFRLYQTLLKALST-HQPDLPQPAISQPPPKPTPSSVRILVAEDNVINQK 716

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           V    L R G     V  G +    L     +D   MD+QMPEMDG    + I       
Sbjct: 717 VILKLLDRLGYQADLVTNGLEVLTALQ-EQSYDVVLMDVQMPEMDGITTAQSI------- 768

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
                      E ++  +  H  I+AMTA+ +Q   E  L +GMD Y++KP   + L R 
Sbjct: 769 ----------CEQWDKTNRPH--IVAMTANTMQGDRESYLAAGMDDYIAKPIRLKGLERI 816

Query: 844 VSRF 847
           +S F
Sbjct: 817 LSEF 820


>gi|359432137|ref|ZP_09222530.1| hypothetical protein P20652_0636 [Pseudoalteromonas sp. BSi20652]
 gi|357921229|dbj|GAA58779.1| hypothetical protein P20652_0636 [Pseudoalteromonas sp. BSi20652]
          Length = 1089

 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 193/642 (30%), Positives = 306/642 (47%), Gaps = 106/642 (16%)

Query: 218  ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 277
            ++ +A+L+G +  ++  RI    E    ++  K  AE A  AKS+FLA++SHEIRTPMNG
Sbjct: 540  LIAVAALIGSL-HSSQKRI----ETEQQLVTAKNVAEQAVEAKSEFLASMSHEIRTPMNG 594

Query: 278  VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337
            VLGML +L  T+LD  Q+ ++  AQ+S ++L+++IN++LD +K+E+GKL++E V FNL  
Sbjct: 595  VLGMLSILKQTKLDKQQEHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIEKVQFNLPR 654

Query: 338  ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 397
            +L +V+  F+   +    +L +  +      +I DP R RQI++NL+GN++KFT  G + 
Sbjct: 655  LLGEVVESFALTVEQNNTKLILDATQITISEIISDPNRLRQILSNLIGNAVKFTINGEVI 714

Query: 398  VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 457
            +T  + E                                       DGS           
Sbjct: 715  ITARIDETT-------------------------------------DGSF---------- 727

Query: 458  INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 517
              L  SV DTG GI  + Q+ +F  F Q   S +R  GGTG+GL+I K L   M GE+  
Sbjct: 728  --LQCSVIDTGIGIDSKKQALLFDSFTQADTSTTRQFGGTGLGLAIVKQLCELMNGEVSV 785

Query: 518  VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 577
             S+P  GSTF+FT       S   +  S  + N+           + L++D   + A ++
Sbjct: 786  NSVPEEGSTFSFTIQIQPRLSKEQDLPSHLIKNK-----------RILIIDKCSLNANIA 834

Query: 578  RYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637
               +   G +V  +++ L     +   +     ILV+   +EK    +   + N  K+  
Sbjct: 835  NKQLTVWGAEVNCINNYLDVSHYLNDVTIPPVAILVDYYFFEKAPLANITTLKNFIKMHT 894

Query: 638  GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 697
                KL ++A    S     S  G+ +  +I KPL  S L  SL       N   I   +
Sbjct: 895  ---CKLVIMAP--MSYSPEESKIGMEVDCMIFKPLTPSDLFDSLT------NDKYIEQQQ 943

Query: 698  LPSMSLRHLLLG-------RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 750
              +     L            +L+V+DN +N  VA+A LK+ G      E G +A   L 
Sbjct: 944  NQAQLQNKLTKAVTADSTEPTLLLVEDNKINQIVASALLKQAGIIFDIAENGLEAINKLN 1003

Query: 751  P----PHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVP 806
                 P+Q     MD QMPEMDG++AT+ IRE +   +N+                 ++ 
Sbjct: 1004 EKKGRPYQL--ILMDCQMPEMDGYQATQAIREGKAGNHNQ-----------------NIT 1044

Query: 807  ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            I+A+TA+ +Q   E+CL SGM+ Y+SKP +   L  ++ ++ 
Sbjct: 1045 IIALTANAMQGDKEKCLASGMNDYLSKPLDLAALQPKLQQWL 1086


>gi|283786671|ref|YP_003366536.1| two-component sensor kinase/response regulator [Citrobacter
           rodentium ICC168]
 gi|282950125|emb|CBG89761.1| two-component sensor kinase/response regulator [Citrobacter
           rodentium ICC168]
          Length = 918

 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 179/613 (29%), Positives = 290/613 (47%), Gaps = 122/613 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFALRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTENGNIDILVEKRSISNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F        +V  +G +T + 
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPSVISDGPATMSL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PN+ +++       +    ++  P         Y I  LG+ V        
Sbjct: 535 AGKRIAYVEPNATAAQCTLDILSETPLEVIYSPTFSALAAEHYDIMLLGVAVTFKEPLTM 594

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
              ++   +K+ + +++                     L C  Q            +   
Sbjct: 595 QHERLIQATKMTDYLML--------------------ALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DGV+  S ++KPL S+ L  +L        + N  +  LP    +   +   ++ VD
Sbjct: 624 LKQDGVA--SCLLKPLTSTRLLPALVELC----RHNHHDNALPVNDRK---IAMTVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
           DN  NLK+  A L      V   + G++A +      QFD   MDIQMP+MDG  A ++I
Sbjct: 675 DNPANLKLIGALLDDLVQHVELCDSGQQAVD-RAKQMQFDLILMDIQMPDMDGIRACELI 733

Query: 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
            ++ H                        P++A+TA  +    E+ L +GM+ Y++KP E
Sbjct: 734 HQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIE 773

Query: 837 AEQLYREVSRFFP 849
            ++L+  + R+ P
Sbjct: 774 EDKLHSLLLRYKP 786


>gi|91227847|ref|ZP_01262020.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           12G01]
 gi|91188357|gb|EAS74653.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           12G01]
          Length = 932

 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 213/761 (27%), Positives = 350/761 (45%), Gaps = 124/761 (16%)

Query: 104 ILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITN 163
           IL+   Y  EL + +   + I    GY+    D+ SL      +L   Q +F     +  
Sbjct: 135 ILSEGHYLAELSNESQGTKAI----GYIAVELDLSSL------RLQQYQEVFSAFLVLVL 184

Query: 164 LSHPISMYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIA 222
                S++ S +  D    ++ + N  D  R+  +  R + K    L  +   I  + ++
Sbjct: 185 GLGLASVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVS 244

Query: 223 SLVGH------IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRT 273
               H      I QAT +    +E+     +EL   KK+A+ A   KS+FLA +SHE+RT
Sbjct: 245 LSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRT 304

Query: 274 PMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 333
           P+NGV+G    ++ T+L  +Q DY++T + S   L+++IN++LD +K+E+GKL LE + F
Sbjct: 305 PLNGVIGFTRQMLKTQLSNSQMDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPF 364

Query: 334 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK 393
           + R  L++V++L +  + +KG+E+ + +  ++P  L+GDP R +QI+TNL+GNSIKFTE+
Sbjct: 365 DFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTER 424

Query: 394 GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 453
           G+I V+V +  +  DS+E++                                        
Sbjct: 425 GNIDVSVEMRSQSGDSVELQ---------------------------------------- 444

Query: 454 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKG 513
                     V DTG GI    Q+++F  F Q   SISR +GGTG+GL I++ LV +M G
Sbjct: 445 --------FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGG 496

Query: 514 EIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIR 573
           EI   S  + GSTF FT    +     +E    ++            G + L+++P    
Sbjct: 497 EISLTSRLHQGSTFWFTVRLHSTEMPMSELIEVEL----------LTGKQLLLIEPNMQA 546

Query: 574 AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE-KDTSVSTLFVNNL 632
           A V++  + + GI V   S        + +  +  + +L+     +  D  V T ++   
Sbjct: 547 ASVTQQILSQEGILVTYRSS-------LPNNEEQYDYVLLNLAANQTHDAEVITPWIEQA 599

Query: 633 RKLG----CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 688
           +++      G  S    LA+ I +               + KPL    L  SL  +  V 
Sbjct: 600 KRMAPSVLLGTPSTELALADQIMTEHH---------VQCLTKPLSRRKLLQSL-ISEHVE 649

Query: 689 NKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL 748
           +   +     PS   R   L   +L VDDN  NLK+ +A L+     V     G++A   
Sbjct: 650 SPPVLSAPITPSEGDR---LPLTVLAVDDNPANLKLISALLRERVETVTACSNGQQAVN- 705

Query: 749 LMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL 808
           L    ++D  FMDIQMP+MDG  A K I+E+E N +                     P++
Sbjct: 706 LATEKKYDLIFMDIQMPQMDGVTACKHIKELELNKDT--------------------PVI 745

Query: 809 AMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
           A+TA  +    +  L +GMD Y++KP E   L + +  + P
Sbjct: 746 AVTAHAMAGERDRLLSAGMDDYLTKPIEEHVLQQVLVHWNP 786


>gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
          Length = 1499

 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 181/595 (30%), Positives = 296/595 (49%), Gaps = 92/595 (15%)

Query: 248 ELKKKAEAADVA---KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
           EL+K  +AA  +   K +F A VSHEIRTP+NGV+G+L++L +  L+  Q++YV+ A  S
Sbjct: 258 ELEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNMGLNPKQREYVQAACNS 317

Query: 305 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
           G+ L+ LI  +LD +++ESGK +L+ ++F+L+ ILDDV+ L + ++Q K +EL   + D 
Sbjct: 318 GETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGLLAAQAQRKELELGYVVLDN 377

Query: 365 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
           VP +L GD  R RQI+ NLM N++KFT++G + + V L+E+                   
Sbjct: 378 VPLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLLEK------------------- 418

Query: 425 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                         A+ + L   V DTG GIP+E ++R+F  F 
Sbjct: 419 -----------------------------KAEKLVLHFEVRDTGIGIPVEFRARVFEAFS 449

Query: 485 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
           Q   S +R +GGTG+GL+I + LV  M G+IG  S    GS F FTA       TS    
Sbjct: 450 QADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVESGSGKGSIFWFTAPL---EETSAPQE 506

Query: 545 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
            Q  N       +   G++ L+VD      +         G+      D  + L  + S 
Sbjct: 507 FQVSNK------TGVAGLRLLIVDNSAASRRFIGQTFNAWGMYHGCSEDGQKALRMLRSA 560

Query: 605 S---KIINMILVEQEVWE-KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 660
           +   +  +++LV++ + + K  +++    + + +       K+ L+ +    + + +S  
Sbjct: 561 AVEGRAYDLVLVDENMLDLKGFNLA----HKITEDSLIAPVKIILMGHQHHPASSISSLP 616

Query: 661 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
           GV   + + KP++ S L   +  A+   N+  +    LP          R+IL+V+DN V
Sbjct: 617 GVV--NYVAKPVQQSSLYNVIVSAVK-QNEAAVSE-TLPVAIEETEFSDRRILVVEDNRV 672

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           N +VA   L+R+G  V  V  G++A + +     ++   MD  MP+MDG+EAT+ IR  E
Sbjct: 673 NQQVAVGMLERFGCRVEVVSNGQEALDAI-ANKVYELVLMDCHMPQMDGYEATRRIRVRE 731

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
                                N  VPI+AMTA+V +   ++C+ +GM+ Y+ KP 
Sbjct: 732 -------------------AGNKQVPIIAMTANVRKGDSDKCISAGMNDYLPKPL 767



 Score = 41.6 bits (96), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 27/141 (19%)

Query: 711  KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL---MPPHQFDACFMDIQMPEM 767
            ++LIVDD+          L++ G  +     G +A E     MP    D   MD  MP +
Sbjct: 925  RVLIVDDDRTMRMALRNVLEKGGYWIDEAVNGNQALEFCKQQMP----DLVLMDAVMPVL 980

Query: 768  DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
            DGF A   IR++                      + H P+L +TA     + E    +G 
Sbjct: 981  DGFNACAQIRDLP--------------------DSKHTPVLIITALDDDHSIESAFSAGA 1020

Query: 828  DGYVSKPFEAEQLYREVSRFF 848
              Y+ KP     L + V+R  
Sbjct: 1021 TDYIPKPVHFSVLRKRVARLL 1041


>gi|323492298|ref|ZP_08097454.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio brasiliensis LMG 20546]
 gi|323313462|gb|EGA66570.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio brasiliensis LMG 20546]
          Length = 1197

 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 182/613 (29%), Positives = 310/613 (50%), Gaps = 98/613 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           + +A +A+ AKS FLA +SHEIRTPMN ++GM  + + T+L   Q++Y+   + S  +L+
Sbjct: 471 RDEANSANRAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQRNYIHKVKLSADSLL 530

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            LIN++LD +K+E+GKL++E V F+L  +LD++ +L   ++ ++G+EL ++I   VP TL
Sbjct: 531 GLINDILDFSKIEAGKLDIEQVDFHLENVLDNISNLVGLRASERGLELLIHIDRDVPTTL 590

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R  QI+ NL  N++KFTEKG I +++ +VE   D                     
Sbjct: 591 VGDPLRLGQILINLANNAVKFTEKGEIKISIRVVERNGD--------------------- 629

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                     DL+ L  SVED+G G+  E  +++F+ F Q   S
Sbjct: 630 --------------------------DLV-LQFSVEDSGIGMTPEQTAKLFSKFTQADSS 662

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R +GGTG+GL+ISK L   M G+I   S    GS F+F+       +T   H  +Q  
Sbjct: 663 TTRKYGGTGLGLAISKELSQLMGGDIEVQSEAGKGSCFSFSI------ATRVSHALKQ-- 714

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV-----VSDQLQCLSQIASG 604
            +  SV  E   +K LVVD     A++    I +  +Q +V     V D    L Q    
Sbjct: 715 -EDISVPVELNKLKVLVVDDNA-SARIIVEDILK-SLQFDVFTASNVDDAYSELQQAIGS 771

Query: 605 SKIINMILVEQEVWEKD-TSVSTLFVNNLRKLGCGFQSKLFLLA----NSISSSRANTST 659
           +   ++++ + ++  KD   +  L   N+ +     Q KL +L       +S +  N   
Sbjct: 772 NSQYDLLISDWKMPGKDGIDLVELVSQNIAQ---SAQPKLLMLTAYAREELSEAMENR-- 826

Query: 660 DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDD 717
            G+  PS++ KP+ +S L  ++    GV +    R+       L ++  L G ++L+V+D
Sbjct: 827 -GLESPSILDKPVTASHLFDAIVTLYGVSSSRLSRSEAEEQHQLANVQQLAGAQLLLVED 885

Query: 718 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
           N +N ++A   L+     V   E G+ A + L   ++FD   MD QMP MDG++AT+ IR
Sbjct: 886 NEINQELAIELLEGQQMHVTVAENGQVAID-LYKANEFDGILMDCQMPVMDGYKATQYIR 944

Query: 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
                               + +++  +PI+AMTA+V++    +  ++GM+  ++KP + 
Sbjct: 945 --------------------QQLNDQQIPIIAMTANVMERDKVKAAQAGMNDIIAKPIDV 984

Query: 838 EQLYREVSRFFPP 850
             ++  ++++  P
Sbjct: 985 GSMFSTLAQWVTP 997


>gi|421082399|ref|ZP_15543282.1| Hybrid sensory histidine kinase BarA [Pectobacterium wasabiae CFBP
           3304]
 gi|401702636|gb|EJS92876.1| Hybrid sensory histidine kinase BarA [Pectobacterium wasabiae CFBP
           3304]
          Length = 928

 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 193/614 (31%), Positives = 293/614 (47%), Gaps = 122/614 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T L+ TQ DY+ T + S   L+
Sbjct: 280 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLNTTQTDYLLTIERSANNLL 339

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F+L + LDDV+ L +  + +KG+EL + I + VPE  
Sbjct: 340 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVMMLLAHTAHEKGLELTLSIQNDVPEQY 399

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +QIITNL+GN+IKFTE+G+I + V    +    +++E                
Sbjct: 400 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLE---------------- 443

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                           V + DTG GI    QS++F  F Q   S
Sbjct: 444 --------------------------------VQICDTGIGIAELQQSQLFQAFRQADTS 471

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S  N GSTF F             H +  +N
Sbjct: 472 ISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWF-------------HITLPLN 518

Query: 550 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             P++V  E      QG     V+  PI A+ +   + +  + V           Q+  G
Sbjct: 519 --PHTVPIEPVYTMLQGKHLAYVEYHPIAAQATLDILSQTPLMVSYSP----TFEQLPEG 572

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA-NTSTDGVS 663
               +++L+      ++T +   +   LR + C     + L   S++   A    T GV 
Sbjct: 573 E--FDILLLAIPAQYRNTLLD--YTPRLRDI-CRRAPCVILALPSLAQMDAEQLKTFGVH 627

Query: 664 IPSVIMKPLRSSMLAASLQRAM----------GVGNKGNIRNWELPSMSLRHLLLGRKIL 713
             + + KPL +S L   LQ +              ++G +R+   P+       L   ++
Sbjct: 628 --ACLSKPLAASRLLPLLQDSTLFQLSFLPSDTTSHQGAVRH---PAR------LPLSVM 676

Query: 714 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFMDIQMPEMDGFEA 772
            VDDN  NLK+    L+     ++  E G +A T+  M  HQ D   MDIQMP MDG  A
Sbjct: 677 AVDDNPANLKLIGTLLEEQVDTIILCESGTEAITQAKM--HQIDIILMDIQMPGMDGICA 734

Query: 773 TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832
           ++ IR++ H+                       PI+A+TA  +    E  L SGMD Y++
Sbjct: 735 SEWIRQIPHHATT--------------------PIIAVTAQTMTGEREHLLSSGMDDYLA 774

Query: 833 KPFEAEQLYREVSR 846
           KP + + L   ++R
Sbjct: 775 KPIDEQMLKSVLTR 788


>gi|269965226|ref|ZP_06179360.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           40B]
 gi|269830212|gb|EEZ84439.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           40B]
          Length = 932

 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 213/761 (27%), Positives = 350/761 (45%), Gaps = 124/761 (16%)

Query: 104 ILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITN 163
           IL+   Y  EL + +   + I    GY+    D+ SL      +L   Q +F     +  
Sbjct: 135 ILSEGHYLAELSNESQGTKAI----GYIAVELDLSSL------RLQQYQEVFSAFLVLVL 184

Query: 164 LSHPISMYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIA 222
                S++ S +  D    ++ + N  D  R+  +  R + K    L  +   I  + ++
Sbjct: 185 GLGLASVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVS 244

Query: 223 SLVGH------IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRT 273
               H      I QAT +    +E+     +EL   KK+A+ A   KS+FLA +SHE+RT
Sbjct: 245 LSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRT 304

Query: 274 PMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 333
           P+NGV+G    ++ T+L  +Q DY++T + S   L+++IN++LD +K+E+GKL LE + F
Sbjct: 305 PLNGVIGFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPF 364

Query: 334 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK 393
           + R  L++V++L +  + +KG+E+ + +  ++P  L+GDP R +QI+TNL+GNSIKFTE+
Sbjct: 365 DFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTER 424

Query: 394 GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 453
           G+I V+V +  +  DS+E++                                        
Sbjct: 425 GNIDVSVEMRSQSGDSVELQ---------------------------------------- 444

Query: 454 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKG 513
                     V DTG GI    Q+++F  F Q   SISR +GGTG+GL I++ LV +M G
Sbjct: 445 --------FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGG 496

Query: 514 EIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIR 573
           EI   S  + GSTF FT    +     +E    ++            G + L+++P    
Sbjct: 497 EISLTSRLHQGSTFWFTVRLHSTEMPMSELIEVEL----------LTGKQLLLIEPNMQA 546

Query: 574 AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE-KDTSVSTLFVNNL 632
           A V++  + + GI V   S        + +  +  + +L+     +  D  V T ++   
Sbjct: 547 ASVTQQILSQEGILVTYRSS-------LPNNEEQYDYVLLNLAANQTHDAEVITPWIEQA 599

Query: 633 RKLG----CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 688
           +++      G  S    LA+ I +               + KPL    L  SL  +  V 
Sbjct: 600 KRMAPSVLLGTPSTELALADQIMTEHH---------VQCLTKPLSRRKLLQSL-ISEHVE 649

Query: 689 NKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL 748
           +   +     PS   R   L   +L VDDN  NLK+ +A L+     V     G++A   
Sbjct: 650 SPPVLSAPITPSEGDR---LPLTVLAVDDNPANLKLISALLRERVETVTACSNGQQAVN- 705

Query: 749 LMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL 808
           L    ++D  FMDIQMP+MDG  A K I+E+E N +                     P++
Sbjct: 706 LATEKKYDLIFMDIQMPQMDGVTACKHIKELELNKDT--------------------PVI 745

Query: 809 AMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
           A+TA  +    +  L +GMD Y++KP E   L + +  + P
Sbjct: 746 AVTAHAMAGERDRLLSAGMDDYLTKPIEEHVLQQVLVHWNP 786


>gi|260599137|ref|YP_003211708.1| hybrid sensory histidine kinase BarA [Cronobacter turicensis z3032]
 gi|260218314|emb|CBA33302.1| Signal transduction histidine-protein kinase barA [Cronobacter
           turicensis z3032]
          Length = 919

 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 188/611 (30%), Positives = 295/611 (48%), Gaps = 118/611 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  + DKG+EL + +   VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFT+ G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S P+ GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++     +    GM+   V+     AK +R  +    + V V S  L  L Q    
Sbjct: 522 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLANTPLTV-VYSPDLATLPQAHYD 578

Query: 605 SKIINMILVEQEVW----EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 660
             +    + ++E      ++    +TL    +  L C  Q    +L             +
Sbjct: 579 ILLFAAPVTDREPLSMRHDQLARAATLTDCLILALPCHAQINAEML-----------KKE 627

Query: 661 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
           G S  + ++KP+ ++ L   L     +     I   ELP      + +   ++ VDDN  
Sbjct: 628 GAS--ACLLKPVTATRLMPLLLEHCRL-----IHARELPDGDQSRMPM--TVMAVDDNPA 678

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
           NLK+  A L+     VV  E G +A E  +L P   FD   MDIQMP+MDG  A ++IR+
Sbjct: 679 NLKLIGALLEDMVQHVVLCESGHQAVERAMLQP---FDIILMDIQMPDMDGIHACELIRK 735

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
           +                        H PI+A+TA  +    E+ L +GM+ Y++KP E E
Sbjct: 736 LPQ--------------------QQHTPIIAVTAHAMSGQKEKLLSAGMNDYLAKPIEEE 775

Query: 839 QLYREVSRFFP 849
           +L   + R+ P
Sbjct: 776 KLRALLLRYQP 786


>gi|359462140|ref|ZP_09250703.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris sp. CCMEE 5410]
          Length = 826

 Score =  247 bits (630), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 179/604 (29%), Positives = 284/604 (47%), Gaps = 77/604 (12%)

Query: 244 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 303
             + E  + A+AA++AKS+FLA +SHEIRTPMN V+GM D+L DT LD  QQD+V T + 
Sbjct: 294 QALQESSQAAQAANLAKSEFLAMISHEIRTPMNAVIGMTDLLKDTHLDPHQQDFVETIRT 353

Query: 304 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 363
           SG++L+++IN++LD +K+ESGKLELE   F L   +++ L + + K+  KG+ELA  I  
Sbjct: 354 SGESLLNIINDILDFSKIESGKLELELHPFPLSTCIEEALDIVNSKATAKGLELAYLIEP 413

Query: 364 RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 423
             P  + GD  R RQI+ NL+GN++KFT  G + VT+   +     +  E  L       
Sbjct: 414 GTPNHIQGDANRLRQILVNLLGNAVKFTADGEVIVTISARDVATAEMTPEVPLF------ 467

Query: 424 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483
                                            L  L+  V+DTG GI  E Q ++F  F
Sbjct: 468 ---------------------------------LHELLFEVKDTGIGIAPEHQQKLFQSF 494

Query: 484 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 543
            Q+  SI+R +GGTG+GL+ISK L   M G I   S   IGS F FT +  +      +H
Sbjct: 495 CQLDSSITREYGGTGLGLAISKQLCELMGGTIWVESQVGIGSRFFFT-IAASALPGLEDH 553

Query: 544 NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 603
                     +  S+FQ  + L+V+      ++    +Q  G+   + S  L+ L+ +  
Sbjct: 554 ---------RATESQFQNKRVLIVEDNASTGQILCQQVQAWGLVPTLASSGLEALAWVKK 604

Query: 604 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
               + +  ++         +S L  N++       Q+ L ++        A        
Sbjct: 605 ERFDVAIADLQLPTMTWSRLLSELTQNHI-------QAPLPIIGLCAIGESAAVWQYQPL 657

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 723
           + + + KP++   L  +L +A+   ++ ++    +     +      +IL+ +DN +N K
Sbjct: 658 LSASLSKPVKQFRLYQTLLKALST-HQSDLTQPSISQPPPKPAPSSVRILVAEDNVINQK 716

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           V    L R G     V  G +    L     +D   MD+QMPEMDG    + I       
Sbjct: 717 VILKLLDRLGYQADLVTNGLEVLTALQ-EQSYDVVLMDVQMPEMDGITTAQSI------- 768

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
                      E ++  +  H  I+AMTA+ +Q   E  L +GMD Y++KP   + L + 
Sbjct: 769 ----------CEQWDKTTRPH--IVAMTANTMQGDRESYLAAGMDDYIAKPIRLKGLEQI 816

Query: 844 VSRF 847
           +S F
Sbjct: 817 LSEF 820


>gi|334125404|ref|ZP_08499393.1| sensor histidine kinase GacS [Enterobacter hormaechei ATCC 49162]
 gi|333386867|gb|EGK58071.1| sensor histidine kinase GacS [Enterobacter hormaechei ATCC 49162]
          Length = 919

 Score =  247 bits (630), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 187/612 (30%), Positives = 296/612 (48%), Gaps = 120/612 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + +EL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L +  S DKG+EL + I + VP+ +
Sbjct: 343 TIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRSLSNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQTRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN      V+   +GM+   V+P    A+ +   +    ++V V S     L+     
Sbjct: 522 --PNVQTDGPVTGCLKGMRLAYVEPNAAAAQCTLDVLSSTPLEV-VYSPTFSALANDHYD 578

Query: 605 SKIINM-------ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 657
             ++ +       + ++QE   K  S++      L  L C  Q     L N         
Sbjct: 579 ILLLGIPVTFTGELTMQQERLAKAASMTDYL---LLALPCHAQINAEELKN--------- 626

Query: 658 STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDD 717
             DG +  + ++KPL ++ L  +L     + ++       LP  +  H  L   ++ VDD
Sbjct: 627 --DGAA--ACLLKPLTATRLLPALTEYCRLTHQS------LPLENDEH-KLPMTVMAVDD 675

Query: 718 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
           N  NLK+    L+     V     G +A E      QFD   MDIQMP MDG  A ++IR
Sbjct: 676 NPANLKLIGVLLEDQVQHVELCTSGAEAVE-QAKQMQFDLILMDIQMPGMDGIRACELIR 734

Query: 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
           ++ H                        P++A+TA  +    E+ L +GM+ Y++KP + 
Sbjct: 735 QLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMNDYLAKPIDE 774

Query: 838 EQLYREVSRFFP 849
           E+L+  + R+ P
Sbjct: 775 EKLHSLLLRYKP 786


>gi|408788053|ref|ZP_11199776.1| two component sensor kinase/response regulator hybrid [Rhizobium
            lupini HPC(L)]
 gi|408486131|gb|EKJ94462.1| two component sensor kinase/response regulator hybrid [Rhizobium
            lupini HPC(L)]
          Length = 1144

 Score =  246 bits (629), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 197/650 (30%), Positives = 315/650 (48%), Gaps = 106/650 (16%)

Query: 226  GHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 285
            G+ +   V  + +++     +  L  +AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L
Sbjct: 559  GNYWLVIVTDVTEMKMREGELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELL 618

Query: 286  MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 345
              + LD  Q+ +      SG AL+++IN++LD +K+E+G+++L +VSF+    ++DV+SL
Sbjct: 619  AKSNLDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVSFDPAEAVEDVVSL 678

Query: 346  FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 405
             S  + +K +EL V I+  V   +IGD GRFRQI+TNL+GN++KFTE GH+ V       
Sbjct: 679  LSSAALEKNIELVVRIAPSVFGKVIGDAGRFRQIVTNLVGNAVKFTETGHVLV------- 731

Query: 406  VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 465
                     ELS+                                +S+ A    L + VE
Sbjct: 732  ---------ELSA--------------------------------QSAEASEAILSLRVE 750

Query: 466  DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 525
            D+G GIP +    IF  F QV  S +R H GTG+GL+I+  LVG   G+I  VS    GS
Sbjct: 751  DSGIGIPSDKLETIFDKFSQVDSSATRRHEGTGLGLAITVGLVGLFNGKIDVVSEVGKGS 810

Query: 526  TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
            +F     F        +   ++ +  P SV+ E   ++ LV+D   +  ++    +Q  G
Sbjct: 811  SFEVNIPF--------QMTERRRDVPPLSVAIE--NIRVLVIDDNDVNRRILTEQLQSWG 860

Query: 586  IQ---VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642
            I    VE     L  L +  +    I+ I+++  +      ++ L V    +    F   
Sbjct: 861  IDGHAVEGGPTGLAVLQEAVAVGLSIDAIILDYHM----PVMNGLDVVERIRADRRFDDI 916

Query: 643  LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAAS---------LQRA-----MGVG 688
              +   S+      T    +++ + +MKP R+ +L ++         L+RA      G  
Sbjct: 917  AIIFLTSMDVVGDETLFTDLNVQAHLMKPARARLLRSTLFDVVRDVRLKRARPEAFAGAS 976

Query: 689  NKGNI----------RNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVC 738
            + G+           R  E+P++S+R       +L+ +DN+VN  V    L++ G   + 
Sbjct: 977  DGGSSRPEGPASEKKRRAEVPTVSVRLRPSLIDVLVAEDNDVNQIVFTQILQQTGLRFLI 1036

Query: 739  VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYE 798
            V  GKKA +     +      MD+ MP M+G +AT+ IR  E             + A E
Sbjct: 1037 VGNGKKAVQ-AWEEYNPAIILMDVSMPVMNGHQATQAIRTAE-------------LAAAE 1082

Query: 799  NVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
                 HVPI+ +TA    A  + CL++GMD Y+SKP   E L  +++++ 
Sbjct: 1083 GR---HVPIIGVTAHTQDADRDLCLQAGMDDYLSKPISPEILEDKIAQWL 1129


>gi|428298374|ref|YP_007136680.1| PAS/PAC sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
 gi|428234918|gb|AFZ00708.1| PAS/PAC sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
          Length = 837

 Score =  246 bits (629), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 190/601 (31%), Positives = 280/601 (46%), Gaps = 98/601 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K+ AEAA+ AKS FLA +SHEIRTPMNG++GM ++L+DT L   Q DYV T + SG  L+
Sbjct: 303 KQAAEAANFAKSDFLAVMSHEIRTPMNGIIGMTNLLLDTSLKPEQLDYVETIRNSGDTLL 362

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+ESGKLELE   F+LR  +++ L L + ++  KG+EL   +    P  +
Sbjct: 363 TIINDILDFSKIESGKLELEKHPFDLRVCVEEALDLLASQATAKGIELIYKLESHTPTQI 422

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGD  R RQII NL+ N++KFT  G I VT+   +++                       
Sbjct: 423 IGDITRLRQIILNLVSNAVKFTTDGEILVTISTQQQI----------------------- 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                             SP ++S  D   L  ++ DTG GIP +   R+F  F QV  S
Sbjct: 460 ------------------SPEENSQHD-CELQFAISDTGVGIPRDRLDRLFQAFSQVDVS 500

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R +GGTG+GL+I K L   M G +   S    GSTF FTA+     ++ N        
Sbjct: 501 TTRRYGGTGLGLAIGKRLSEIMGGRMWVESEEGKGSTFYFTAILQVHPASFN-------- 552

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
              + +  E    K L+            + +Q +G+ V+        L  +   S  I 
Sbjct: 553 --ISHIEPELTNKKLLLAVGNAKLRNCLTWQLQNMGLDVKSSESSNMTLHYMQENSFQIA 610

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS--IPSV 667
           +I ++        S     +N   K+      +   L    S  + N     ++    + 
Sbjct: 611 IIDID--------SPDFHHINLTEKIRAIPNQRDLTLIMLSSQGKQNLEHQPIATEFTAF 662

Query: 668 IMKPLRSSMLAAS-LQRAMGVGNK--GNIRN----------WELPSMSLRHL-LLGRKIL 713
           + KPLR   L  + LQ A G+ +K  GN               LP    +    L  KIL
Sbjct: 663 LQKPLRHYQLHNTLLQVARGIWSKQSGNCSTKILSYSRTEPQNLPVHDHKFAEKLPLKIL 722

Query: 714 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
           +V+D  VN K+A   L++ G        G +A +       +D  FMD+QMPEMDG EAT
Sbjct: 723 LVEDGLVNQKIALKLLEKLGYQADVANNGLEAVK-ATQKQLYDVVFMDVQMPEMDGLEAT 781

Query: 774 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
           + IR+            E+S +           I+AMTA+      +ECL +GM+ Y+SK
Sbjct: 782 RQIRK------------ELSKQP---------QIIAMTANARPEDRQECLNAGMNDYISK 820

Query: 834 P 834
           P
Sbjct: 821 P 821


>gi|350553739|ref|ZP_08922902.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
           700588]
 gi|349790034|gb|EGZ43960.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
           700588]
          Length = 918

 Score =  246 bits (629), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 191/629 (30%), Positives = 294/629 (46%), Gaps = 104/629 (16%)

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           +L  +AE A+ AKS+FLA +SHEIRTPMNGV+GM  +L+DT LD TQ+ Y  T + S ++
Sbjct: 373 DLTLQAERANAAKSEFLANMSHEIRTPMNGVIGMTTLLLDTALDATQRHYADTVKKSAES 432

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L+ L+N++LD +KVE+GKL+LE +  ++  ++D+V+S  + ++ +K +EL   + D V  
Sbjct: 433 LLGLLNDILDFSKVEAGKLDLEHLELDIATLVDEVISAQAVRAYEKNLELLCVLDDDVLS 492

Query: 368 -TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGY 426
             L GDPGR RQI+ NL+GN+IKF+E+G + V V L+E+                     
Sbjct: 493 LALSGDPGRLRQILNNLVGNAIKFSERGEVVVRVQLLEK--------------------- 531

Query: 427 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 486
                                   ++++A    L   V DTG GI  +    +F  F QV
Sbjct: 532 ------------------------RAATA---RLRFEVCDTGIGIAADKVPLLFEKFSQV 564

Query: 487 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 546
             S +R +GGTG+GL+I K LV  M G IG  S    GS F F+            H + 
Sbjct: 565 DASTTRRYGGTGLGLAICKQLVELMGGTIGVQSQEGQGSVFWFSVPLTLNIDVPRPHAAH 624

Query: 547 QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
              N         Q  + LVVD    +  +    + + G++    +D ++ L  +    K
Sbjct: 625 ATEN--------LQQRRILVVDDNATQRTLLTQRLGQWGMRAAGAADGVEALRLLYQAHK 676

Query: 607 ---------IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 657
                    +IN+   +  V + +T   TL  +         Q  L ++  S+  +    
Sbjct: 677 EEHEPYQAVLINL---QMPVMDGETLGRTLSADP------QMQGLLRVILPSVVRAEDPQ 727

Query: 658 STDGVSIPSVIMKPLRSSMLAASLQR--AMGVGNKGNIRNWELPSMSLRHLL----LGRK 711
                   + + KP+R + L   LQ+  A        I    +  +   H +       +
Sbjct: 728 RYQQAGFHACLPKPIRQTALLHVLQQLFAPSFDQHRMITPHTVQPVQSSHAVNFAHAQVR 787

Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
           IL+V+DN VN +VA   L++ G     V  G+ A + L     +D   MD+QMP MDG  
Sbjct: 788 ILLVEDNVVNQQVALGMLRKLGLQATAVNHGQAALDHLSQA-DYDLILMDVQMPVMDGIT 846

Query: 772 ATKIIREMEHN-FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
           AT+ IR    + F+ RI                  PI+AMTA  + +  E CL +GM+ Y
Sbjct: 847 ATQRIRAASGDAFDPRI------------------PIIAMTAHAMPSDKEACLAAGMNDY 888

Query: 831 VSKPFEAEQLYREVSRFFP---PIPDRSP 856
           VSKP    QL   ++R+     P+P   P
Sbjct: 889 VSKPLSLAQLTTVLTRWLDDLRPVPAGEP 917


>gi|83593696|ref|YP_427448.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
            11170]
 gi|386350441|ref|YP_006048689.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum F11]
 gi|83576610|gb|ABC23161.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
            11170]
 gi|346718877|gb|AEO48892.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum F11]
          Length = 1560

 Score =  246 bits (629), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 182/610 (29%), Positives = 297/610 (48%), Gaps = 98/610 (16%)

Query: 236  IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 295
            +++ +E    ++  K+ AE A V K QFLA +SHEIRTPMN +LGML ++  T L   Q 
Sbjct: 872  VSRRKEFERALVLAKQAAEEASVVKGQFLANMSHEIRTPMNAILGMLTLVQRTALTPHQA 931

Query: 296  DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 355
            DYV  A ++  +L+ L+N++LD +K+E+GKL LE   F L  +L D+  + SG   DKGV
Sbjct: 932  DYVCKAHSAAGSLLGLLNDILDFSKIEAGKLHLEPHPFRLETVLRDLAVVLSGSYGDKGV 991

Query: 356  ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415
            E+   I+  +P++ IGD  R RQ++ NL GN++KFT++G + V+V ++            
Sbjct: 992  EVLFDIAPHLPDSFIGDDLRLRQVLLNLAGNALKFTDQGQVIVSVGVL------------ 1039

Query: 416  LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 475
                                                +   D + + ++V DTG GI  + 
Sbjct: 1040 ------------------------------------AREDDRLTMRMAVSDTGIGIAADQ 1063

Query: 476  QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535
             + IF  F Q   S +R  GG+G+GL+I+++LV RM G +   S P  GS F F      
Sbjct: 1064 LASIFGAFEQAETSTTRRFGGSGLGLTITRHLVERMGGVLRVESQPGRGSRFWFDITL-- 1121

Query: 536  GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 595
                S E +    + +P         ++ LVV+  P+   +    +Q LG   ++V +  
Sbjct: 1122 --PVSGEGSESAESGRP---------LRVLVVEDNPVAGGILAQTVQGLGYDCDLVQESA 1170

Query: 596  QCLSQIA---SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF--QSKLFLLANSI 650
            +  ++I    +  +  + +L++  + E D   +      LR++G     QS + + A   
Sbjct: 1171 ETKARIVAADAAGRPYDAVLLDWRMPEVDGLTTARI---LREMGVTLCPQSIIMVTAYGR 1227

Query: 651  SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL---L 707
                    T      +V+ KP+    L  +L R     ++G     E  +++ R L   L
Sbjct: 1228 DVLSLAEQTGDAPFDAVLTKPVTPGQLRDALLRRDRATSEG-----EATALAPRGLPTPL 1282

Query: 708  LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQMPE 766
             GR++L+V+DN +N +VAA  L   GA +   E G++   +++     +DA  MDIQMP+
Sbjct: 1283 AGRRLLVVEDNAINRQVAAELLAGAGAEIDLAEGGERGVMMVLRGEIAYDAVLMDIQMPD 1342

Query: 767  MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG 826
            +DGFEAT+ IR      + R +                +PI+AMTA+  +A  E CL +G
Sbjct: 1343 IDGFEATRRIRA-----DARFK---------------ALPIVAMTANASRADREACLAAG 1382

Query: 827  MDGYVSKPFE 836
            M  +V KP +
Sbjct: 1383 MTEHVGKPID 1392


>gi|398800953|ref|ZP_10560211.1| signal transduction histidine kinase [Pantoea sp. GM01]
 gi|398093502|gb|EJL83882.1| signal transduction histidine kinase [Pantoea sp. GM01]
          Length = 909

 Score =  246 bits (629), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 182/611 (29%), Positives = 292/611 (47%), Gaps = 121/611 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T L   Q+DY+ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTGLSTNQRDYMSTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LE++ F LRA LD+ L L +  + DKG+E+ V +  +VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLVLESIPFPLRATLDETLVLLAPSAHDKGLEITVCLEKQVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QI+ NL+GN+IKFTE GHI + V          EV + LS+++         
Sbjct: 403 IGDPLRLQQIMINLIGNAIKFTEHGHIDLRV----------EVRS-LSATR--------- 442

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                       + L + V DTG GI  + QS++F  F Q   S
Sbjct: 443 ----------------------------VELEIQVHDTGIGISEQQQSQLFQAFRQADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           I+R HGGTG+GL I++ LV  M GEI F S PN GSTF               H    +N
Sbjct: 475 ITRRHGGTGLGLVITQKLVSEMGGEIAFHSRPNQGSTFWV-------------HIHLDLN 521

Query: 550 NQPNSVSSEFQGMKAL---VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
               ++      ++A     ++P P  AK  +  +    +QV+  S     L ++     
Sbjct: 522 PNAPAIPRMLDDLRATPLAYIEPHPAVAKAVQEMLSITPLQVQHFS----SLEELPDTH- 576

Query: 607 IINMILVEQEVWEKD-TSVSTLFVNNLR----KLGCGFQSKLFLLANSISSSRANTSTDG 661
              ++L+   V E    ++    +  LR     +     S + L A+ + +         
Sbjct: 577 -FPLLLMGLPVTEPHPATLPDALIQRLRGHADSVLLALPSDMMLFADDLRAR-------- 627

Query: 662 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE---LPSMSLRHLLLGRKILIVDDN 718
             I   I KP+  + L   L          ++ +W+   LP  + + L     ++ VDDN
Sbjct: 628 -GIAGCIAKPVSLTRLLPMLL---------DLHDWQRDALPRGARQPL----TVMAVDDN 673

Query: 719 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             NLK+  A L+     ++  +  ++A       H+ D   MDIQMP++DG  A++IIR 
Sbjct: 674 PANLKLIGALLEEQVQHIILCDNAEQAIRQAR-LHKLDVILMDIQMPDIDGIRASEIIRS 732

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
           +  +                       PI+A+TA  +     + + +GM+ Y++KP + +
Sbjct: 733 LPLHATT--------------------PIVAVTAHALDGERAQLINAGMNDYLAKPIDED 772

Query: 839 QLYREVSRFFP 849
           +L + + R+ P
Sbjct: 773 KLSQLLQRYAP 783


>gi|355647545|ref|ZP_09055102.1| sensor protein gacS [Pseudomonas sp. 2_1_26]
 gi|354827866|gb|EHF12004.1| sensor protein gacS [Pseudomonas sp. 2_1_26]
          Length = 891

 Score =  246 bits (629), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 190/617 (30%), Positives = 291/617 (47%), Gaps = 125/617 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +K+A  A   KS+FLA +SHEIRTP+NG+LG  ++L  +EL   QQDY+ T Q S ++L+
Sbjct: 240 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLTTIQKSAESLL 299

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +INE+LD +K+E+GKL LE + FNLR ++ D L++ +  + +K +EL   +    P  L
Sbjct: 300 GIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDTPIQL 359

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R +QI+TNL+GN+IKFT+ G + V   L +E                        
Sbjct: 360 QGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDE------------------------ 395

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                   S D   L +SV+DTG G+  E Q  +F  F Q   S
Sbjct: 396 ------------------------SDDRAQLRISVQDTGIGLSEEDQQALFKAFSQADNS 431

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           +SR  GGTG+GL ISK L+ +M GEIG  S P  G+ F  +              S+  N
Sbjct: 432 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSLP---------KSRDDN 482

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS--DQLQ----------- 596
            +P   +S   G +  +++P+ +  +   + +   G++V   +  D LQ           
Sbjct: 483 EEPG--ASWAAGQRVALLEPQELTRRSLHHQLTDFGLEVSEFADLDSLQESLRNPPPDQL 540

Query: 597 --CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 654
              L+ +   + I     + Q  WE              +LGC    K  +L  +   ++
Sbjct: 541 PISLAVLGVSAAIHPPEELSQSFWE------------FERLGC----KTLVLCPTTEQAQ 584

Query: 655 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR-HLLL-GR-- 710
            + +   +    V  KP  +  L   LQ  + V           P+ S + H ++ GR  
Sbjct: 585 YHAT---LPDEQVEAKPACTRKLQRKLQELLQVR----------PTRSDKPHAMVSGRPP 631

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
           ++L VDDN  NL +    L   GA V  V+ G  A E++    +FD  FMD+QMP MDG 
Sbjct: 632 RLLCVDDNPANLLLVQTLLSDLGAQVTAVDSGYAALEVVQ-RERFDLVFMDVQMPGMDGR 690

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
           +AT+ IR                 EA   VS   VP++A+TA  +       L++GMD Y
Sbjct: 691 QATEAIRRW---------------EAEREVSP--VPVIALTAHALSNEKRALLQAGMDDY 733

Query: 831 VSKPFEAEQLYREVSRF 847
           ++KP + +QL + V ++
Sbjct: 734 LTKPIDEQQLAQVVLKW 750


>gi|295134137|ref|YP_003584813.1| two-component system sensor histidine kinase/response regulator
            hybrid [Zunongwangia profunda SM-A87]
 gi|294982152|gb|ADF52617.1| two-component system sensor histidine kinase/response regulator
            hybrid [Zunongwangia profunda SM-A87]
          Length = 1567

 Score =  246 bits (629), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 191/618 (30%), Positives = 296/618 (47%), Gaps = 100/618 (16%)

Query: 228  IFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 287
            I  AT+  I + +E  + ++E K KAEAA  +KS+FLA +SHEIRTP+NGV+G  D+LM 
Sbjct: 908  IILATIQDITRRKEMENSLVEAKLKAEAASKSKSEFLANMSHEIRTPLNGVIGFTDLLMK 967

Query: 288  TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 347
            TEL+ +Q+ Y+ T   S   L+ LIN++LD +K+E+GKLEL     N+  +    + +  
Sbjct: 968  TELNTSQKQYMETVYNSANTLLDLINDILDFSKIEAGKLELSVEKINIIELCGQTIDVVK 1027

Query: 348  GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 407
             K+ +KG+E+ + IS +V   + GD  R RQI+TNL+GN++KFT KG             
Sbjct: 1028 HKAHEKGLEVLLNISQKVDRYIYGDSVRIRQILTNLLGNAVKFTNKG------------- 1074

Query: 408  DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 467
              IE+  E + +KNT        R +++                            V DT
Sbjct: 1075 -EIELRIE-AGNKNT-----EHQREYTF---------------------------IVRDT 1100

Query: 468  GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
            G GI  +   RIF  F Q   S +R +GGTG+GL+IS  L+  M  ++   S P IGS+F
Sbjct: 1101 GIGIAPQNLERIFKAFDQEDSSTTRKYGGTGLGLTISNKLLYLMNSKLDVQSEPGIGSSF 1160

Query: 528  TFTAVFGN--GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
            +F   F +  G+S  +E++S+  N               L++D       + +  +    
Sbjct: 1161 SFKVYFESEEGASFLDENSSKITN--------------VLIIDDNYNNQVILKEMLAIED 1206

Query: 586  IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLR---KLGCGFQSK 642
            IQ    S+ ++ L+ +        + +V+   +         F+ +LR   KL    Q  
Sbjct: 1207 IQCHAASNAIEALN-LLEKENTYQLAIVD---YNMPYMTGIDFIAHLRNDLKLDAE-QLP 1261

Query: 643  LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM----GVGNKGNIRNWEL 698
            L LL +S    +   + + + +   I KP++   L   L +      GV  K       +
Sbjct: 1262 LILLHSSAQEEKLAKACEDLDVQFNINKPIKIDQLYRMLNQIQAPFKGVEEKP------V 1315

Query: 699  PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRY--GAAVVCVERGKKATELLMPPHQFD 756
                 +      ++LI +DN VN  +A   L +    A +V VE G+ A       H  D
Sbjct: 1316 DEFKEKTFDDNFRVLIAEDNPVNKFLAKTILTKAVPNAEIVEVENGQDAVS-FYKEHPLD 1374

Query: 757  ACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 816
              FMDIQMP M GFEA++ IR+ E + N +                 HVPI+A+TA  ++
Sbjct: 1375 IIFMDIQMPIMSGFEASEEIRKYESDQNEQQ----------------HVPIIALTARTVK 1418

Query: 817  ATYEECLRSGMDGYVSKP 834
               E CL +GMD Y++KP
Sbjct: 1419 GEKERCLDAGMDDYITKP 1436


>gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
 gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
          Length = 1240

 Score =  246 bits (629), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 181/595 (30%), Positives = 296/595 (49%), Gaps = 92/595 (15%)

Query: 248 ELKKKAEAADVA---KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
           EL+K  +AA  +   K +F A VSHEIRTP+NGV+G+L++L +  L+  Q++YV+ A  S
Sbjct: 258 ELEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNMGLNPKQREYVQAACNS 317

Query: 305 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
           G+ L+ LI  +LD +++ESGK +L+ ++F+L+ ILDDV+ L + ++Q K +EL   + D 
Sbjct: 318 GETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGLLAAQAQRKELELGYVVLDN 377

Query: 365 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
           VP +L GD  R RQI+ NLM N++KFT++G + + V L+E+                   
Sbjct: 378 VPLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLLEK------------------- 418

Query: 425 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                         A+ + L   V DTG GIP+E ++R+F  F 
Sbjct: 419 -----------------------------KAEKLVLHFEVRDTGIGIPVEFRARVFEAFS 449

Query: 485 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
           Q   S +R +GGTG+GL+I + LV  M G+IG  S    GS F FTA       TS    
Sbjct: 450 QADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVESGSGKGSIFWFTAPL---EETSAPQE 506

Query: 545 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
            Q  N       +   G++ L+VD      +         G+      D  + L  + S 
Sbjct: 507 FQVSNK------TGVAGLRLLIVDNSAASRRFIGQTFNAWGMYHGCSEDGQKALRMLRSA 560

Query: 605 S---KIINMILVEQEVWE-KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 660
           +   +  +++LV++ + + K  +++    + + +       K+ L+ +    + + +S  
Sbjct: 561 AVEGRAYDLVLVDENMLDLKGFNLA----HKITEDSLIAPVKIILMGHQHHPASSISSLP 616

Query: 661 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
           GV   + + KP++ S L   +  A+   N+  +    LP          R+IL+V+DN V
Sbjct: 617 GVV--NYVAKPVQQSSLYNVIVSAVK-QNEAAVSE-TLPVAIEETEFSDRRILVVEDNRV 672

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           N +VA   L+R+G  V  V  G++A + +     ++   MD  MP+MDG+EAT+ IR  E
Sbjct: 673 NQQVAVGMLERFGCRVEVVSNGQEALDAI-ANKVYELVLMDCHMPQMDGYEATRRIRVRE 731

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
                                N  VPI+AMTA+V +   ++C+ +GM+ Y+ KP 
Sbjct: 732 -------------------AGNKQVPIIAMTANVRKGDSDKCISAGMNDYLPKPL 767



 Score = 41.2 bits (95), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 27/141 (19%)

Query: 711  KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL---MPPHQFDACFMDIQMPEM 767
            ++LIVDD+          L++ G  +     G +A E     MP    D   MD  MP +
Sbjct: 925  RVLIVDDDRTMRMALRNVLEKGGYWIDEAVNGNQALEFCKQQMP----DLVLMDAVMPVL 980

Query: 768  DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
            DGF A   IR++                      + H P+L +TA     + E    +G 
Sbjct: 981  DGFNACAQIRDLP--------------------DSKHTPVLIITALDDDHSIESAFSAGA 1020

Query: 828  DGYVSKPFEAEQLYREVSRFF 848
              Y+ KP     L + V+R  
Sbjct: 1021 TDYIPKPVHFSVLRKRVARLL 1041


>gi|334120111|ref|ZP_08494194.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
 gi|333457293|gb|EGK85918.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
          Length = 1521

 Score =  246 bits (628), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 205/690 (29%), Positives = 310/690 (44%), Gaps = 128/690 (18%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + + + +A AA  AKS+FLAT+SHEIRTPMNGV+GM  +L+DT L   Q+D+V T ++SG
Sbjct: 673  LAKARDQALAATRAKSEFLATMSHEIRTPMNGVIGMTGLLLDTPLTREQRDFVETIRSSG 732

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
             AL++LIN++LD +K+ESGKL+LE   F++R  +++ L L + K+ +K +E+   I   V
Sbjct: 733  DALLTLINDILDFSKIESGKLDLEEHPFDIRTCIEESLDLVAAKAAEKKLEVGYLIDRAV 792

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P T IGD  R RQI+ NL+ N++KFTE G + V V         I V    +     ++G
Sbjct: 793  PATAIGDSTRLRQILINLLSNAVKFTEAGEVVVAV-----TAKKISVSAANAKEPPAING 847

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
             PV                   +P          +  +V+DTG GIP +   R+F  F Q
Sbjct: 848  EPVV-----------------INP-------AYEIHFAVKDTGIGIPSDRMDRLFKSFSQ 883

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF---TAVFGNGSSTSNE 542
            V  S SR +GGTG+GL+ISK L   M G +   S+ ++         +AVF  G   S E
Sbjct: 884  VDSSTSRQYGGTGLGLAISKRLAEMMGGRMWVESMGSVAGNPPADFRSAVFDLGWGESCE 943

Query: 543  ------HNSQQMNNQP-----NSVSS------------------------EFQGMKALVV 567
                  +    ++N+P      SV S                        E  G + L+V
Sbjct: 944  IAEKYGYGKSVLSNKPIGQNTKSVGSTFYFSTIVSACNSCLPVSLSNSQPELAGKRVLIV 1003

Query: 568  DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL 627
            D      ++     Q  G+     +     L  +A+  ++ ++ +++ ++ E D      
Sbjct: 1004 DDNATNRRILTLQAQSWGMVARASASAHLALDWLAA-KEMFDLAVLDMQMPEMD---GLA 1059

Query: 628  FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687
                +R+     +  L +L  SI     N+    +   + + KP++ S L   L    G 
Sbjct: 1060 LAAQIRRYPDCEKLPLVML-TSIGRQEINSPAMEMDFAAFLNKPIKQSQLYNVLINIFGE 1118

Query: 688  GN---KGNIRNWE-LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGK 743
                 KG   +   L S+ +    L  +IL+ DD+ VN KVA   L+R G        G 
Sbjct: 1119 QTTEFKGQRTSGPFLQSIPVLAEDLPLRILLADDHLVNQKVALQILQRMGYRADVAGNGI 1178

Query: 744  KATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM---EHNFNNRIRRGEVSI--EAYE 798
            +  E L     +D   MD+QMPEMDG E T+ IRE    +    N     E+S+  E   
Sbjct: 1179 EVLEALR-RQPYDVVLMDVQMPEMDGLETTRRIREQFSADLTLENHTGESEISVTNEPSN 1237

Query: 799  NVSNFHVP----------------------------------------------ILAMTA 812
            N+ +   P                                              I+AMTA
Sbjct: 1238 NLDSTKNPTGGSKVSATDEQSNNRKSRIQNPKLTEEESNNRKSKIENRKSTRPWIVAMTA 1297

Query: 813  DVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
            + +Q   EEC+ +GMD Y+SKP   EQL R
Sbjct: 1298 NAMQGDREECMAAGMDDYLSKPIAIEQLVR 1327



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 20/142 (14%)

Query: 707  LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
            L G+++LIVDDN  N ++     + +G           A + L     FD   +D+QMPE
Sbjct: 995  LAGKRVLIVDDNATNRRILTLQAQSWGMVARASASAHLALDWLAAKEMFDLAVLDMQMPE 1054

Query: 767  MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG 826
            MDG      IR                   Y +     +P++ +T+   Q      +   
Sbjct: 1055 MDGLALAAQIRR------------------YPDCEK--LPLVMLTSIGRQEINSPAMEMD 1094

Query: 827  MDGYVSKPFEAEQLYREVSRFF 848
               +++KP +  QLY  +   F
Sbjct: 1095 FAAFLNKPIKQSQLYNVLINIF 1116


>gi|218782281|ref|YP_002433599.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
            AK-01]
 gi|218763665|gb|ACL06131.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
            AK-01]
          Length = 1152

 Score =  246 bits (628), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 187/607 (30%), Positives = 290/607 (47%), Gaps = 82/607 (13%)

Query: 237  AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 296
            A++E       +L  +A  A+ AKSQFLA +SHEIRTPMNG++GM  +L+DT LD  Q  
Sbjct: 489  AQLEASIKQAEQLANEAFVANNAKSQFLANMSHEIRTPMNGIIGMAALLLDTPLDGQQTV 548

Query: 297  YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 356
            +V+T + S  ALV++IN++LD +KVE+GKLELE   F+L+A L+ +  + + K+ +KG+E
Sbjct: 549  FVQTVRKSAHALVTIINDILDFSKVEAGKLELEEAPFSLQAELEAMGDVLAVKAHEKGLE 608

Query: 357  LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 416
             A  +   VP+ LIGD  R RQ++ N++GN++KFT+ G + + + +    +D     T L
Sbjct: 609  YACIMHPDVPDALIGDSIRLRQVLVNIVGNAVKFTDAGEVSLEISMA--AMDDARC-TLL 665

Query: 417  SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476
             S K+T +G P  D+  +                                          
Sbjct: 666  FSIKDTGAGLP-EDKIET------------------------------------------ 682

Query: 477  SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536
              +F  F Q   S++R  GGTG+GL+IS+ LV  M GEI   +    G+ F FTA F   
Sbjct: 683  --VFEAFAQADSSVTRKFGGTGLGLAISQSLVRLMGGEIIAENREARGAHFRFTASFA-- 738

Query: 537  SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
                     Q   ++ +++       K L+VD  P         +Q+ G      S    
Sbjct: 739  ------LQEQGAEHESSAIDPCLADKKILIVDDCPATRTSISLILQQWGCLCREASGGRS 792

Query: 597  CLSQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 653
             L Q+          N +LV+Q + + D S     + ++++      ++L L+A  + + 
Sbjct: 793  ALEQLQRAVDKHAPFNAVLVDQAMPDMDGSA---LIQSIKENPAYEGARLALMA-PLGAP 848

Query: 654  RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 713
                +       +V+ KP+R   L   L    G   +      E  + S +       +L
Sbjct: 849  GLKAAKSNQDAAAVLTKPVRKKQLYNLLLDLFGNAPETCAAAPEQETKSAQA-ASEFTVL 907

Query: 714  IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
            +V+DN VN  VA   L++ G   + VE G++A E L    Q D   MDIQMP MDG EAT
Sbjct: 908  LVEDNQVNQMVAKGILRKLGYKTLVVENGQEALEFL-AEKQVDIILMDIQMPVMDGLEAT 966

Query: 774  KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
            + IR+  H                  V +   PI+AMTA  ++   E+CL +GMD Y++K
Sbjct: 967  RRIRDGRH-----------------KVLDPGAPIIAMTARAMKGDREKCLDAGMDDYITK 1009

Query: 834  PFEAEQL 840
            P +   L
Sbjct: 1010 PIDPAAL 1016


>gi|338533502|ref|YP_004666836.1| sensory box histidine kinase/response regulator [Myxococcus fulvus
           HW-1]
 gi|337259598|gb|AEI65758.1| sensory box histidine kinase/response regulator [Myxococcus fulvus
           HW-1]
          Length = 929

 Score =  246 bits (628), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 187/619 (30%), Positives = 297/619 (47%), Gaps = 110/619 (17%)

Query: 243 YHGMMELKKKAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 299
           YH + +L++   AA   + AKS FLAT+SHEIRTPMN ++GM  +L+D  L   Q+D+V 
Sbjct: 235 YHDITDLERARRAAEAANQAKSLFLATMSHEIRTPMNAIIGMTGLLLDRTLTEEQRDFVA 294

Query: 300 TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 359
           T + S +AL++L+N+VLD +K+E+G+ E E   F+LR  ++ VL L + ++ +KG++L  
Sbjct: 295 TIRQSSEALLTLLNDVLDFSKIEAGRFEAELRPFDLRQCVESVLDLMAVRASEKGLDLGC 354

Query: 360 YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSS 419
            ++  +P+ L+GD  R RQ++ NL+GN++KFTE G   V+V                   
Sbjct: 355 DMAPELPQMLVGDASRLRQVLLNLVGNALKFTEHGGAVVSV------------------- 395

Query: 420 KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 479
                G P+A                         AD   L  SV+DTG GIP + ++ +
Sbjct: 396 ----EGTPLAG--------------------AEGEADWA-LTFSVQDTGPGIPEDRRAGL 430

Query: 480 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS--IPNIGSTFTFTAVFGNGS 537
           F PF Q+  S+SR  GGTG+GL+I K LV  M G I   S  +P  G+TF FT       
Sbjct: 431 FQPFNQLDASVSRRFGGTGLGLAICKRLVEAMGGTIWVESEGVPGRGTTFRFT------- 483

Query: 538 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
               +   Q    QP    +  QG + L+VD   +  ++    +Q  G+Q    +  ++ 
Sbjct: 484 -LRAQAAPQAYAVQPRQEQALLQGRRVLIVDDNALFRRLLGRQLQAWGLQPAEAASGMEA 542

Query: 598 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 657
           L+Q+ +G++    +L++  +   D +     +    +        L L+  S    R N 
Sbjct: 543 LAQLQAGAR-FEAVLIDHHMPGLDGTALAERIREREE-----TRTLPLVLVSTPGRRGN- 595

Query: 658 STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM-SLRHLLLGRK----- 711
             +G+    V+ +PL+ S L  +L             +  +P + + R     R      
Sbjct: 596 PPEGL-FAGVLSRPLKDSQLYDALMSCF---------SQHIPQLTAARQARPSRAGPFPG 645

Query: 712 ----------ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761
                     IL+V+DN  N K+A   L+R G        G++A + L    ++D   MD
Sbjct: 646 ERPGDTVPLDILLVEDNATNQKLALLVLERLGYRADVALNGRQALQALN-QKRYDVVLMD 704

Query: 762 IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 821
           +QMPEMDG EAT+ IRE                E    V  +   ++AMTA+ + +  E+
Sbjct: 705 LQMPEMDGLEATRRIRE----------------ELPPKVQPW---VIAMTANAMDSDREQ 745

Query: 822 CLRSGMDGYVSKPFEAEQL 840
           C  +GMD ++ KP   E L
Sbjct: 746 CFAAGMDDFLGKPIRVEAL 764


>gi|295097349|emb|CBK86439.1| Hpt sensor hybrid histidine kinase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 919

 Score =  246 bits (628), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 186/612 (30%), Positives = 296/612 (48%), Gaps = 120/612 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + +EL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L +  S DKG+EL + I + VP+ +
Sbjct: 343 TIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQTRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN      V+   +GM+   V+P    A+ +   +    ++V + S     L+     
Sbjct: 522 --PNVQTDGPVTGCLKGMRLAYVEPNAAAAQCTLDVLSSTPLEV-IYSPTFSALANDHYD 578

Query: 605 SKIINM-------ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 657
             ++ +       + ++QE   K  S++      L  L C  Q     L N         
Sbjct: 579 ILLLGIPVTFTGELTMQQERLAKAASMTDYL---LLALPCHAQINAEELKN--------- 626

Query: 658 STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDD 717
             DG +  + ++KPL ++ L  +L     + ++       LP  +  H  L   ++ VDD
Sbjct: 627 --DGAA--ACLLKPLTATRLLPALTEYCRLTHQS------LPLENDEH-KLPMTVMAVDD 675

Query: 718 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
           N  NLK+    L+     V     G +A E      QFD   MDIQMP MDG  A ++IR
Sbjct: 676 NPANLKLIGVLLEDQVQHVELCTSGAEAVE-QAKQMQFDLILMDIQMPGMDGIRACELIR 734

Query: 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
           ++ H                        P++A+TA  +    E+ L +GM+ Y++KP + 
Sbjct: 735 QLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMNDYLAKPIDE 774

Query: 838 EQLYREVSRFFP 849
           E+L+  + R+ P
Sbjct: 775 EKLHSLLLRYKP 786


>gi|424800861|ref|ZP_18226403.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
           sakazakii 696]
 gi|423236582|emb|CCK08273.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
           sakazakii 696]
          Length = 984

 Score =  246 bits (628), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 188/611 (30%), Positives = 295/611 (48%), Gaps = 118/611 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  + DKG+EL + +   VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFT+ G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S P+ GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++     +    GM+   V+     AK +R  +    + V V S  L  L Q    
Sbjct: 522 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLANTPLTV-VYSPDLASLPQAHYD 578

Query: 605 SKIINMILVEQE---VWEKDTSVSTLFVNNL-RKLGCGFQSKLFLLANSISSSRANTSTD 660
             +    + ++E   +     + +  F + L   L C  Q    +L             +
Sbjct: 579 ILLYAAPVTDREPLSMRHDQLARAATFTDCLILALPCHAQINAEML-----------KKE 627

Query: 661 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
           G S  + ++KP+ ++ L   L     +     I   ELP      + +   ++ VDDN  
Sbjct: 628 GAS--ACLLKPVTATRLMPLLLEHCRL-----IHARELPEGDQSRMPM--TVMAVDDNPA 678

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
           NLK+  A L+     VV  E G +A E  +L P   FD   MDIQMP+MDG  A ++IR+
Sbjct: 679 NLKLIGALLEDMVQHVVLCESGHQAVERAMLQP---FDIILMDIQMPDMDGIHACELIRK 735

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
           +                        H PI+A+TA  +    E+ L +GM+ Y++KP E E
Sbjct: 736 LPQ--------------------QQHTPIIAVTAHAMSGQKEKLLSAGMNDYLAKPIEEE 775

Query: 839 QLYREVSRFFP 849
           +L   + R+ P
Sbjct: 776 KLRAMLLRYQP 786


>gi|429105970|ref|ZP_19167839.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
           malonaticus 681]
 gi|426292693|emb|CCJ93952.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
           malonaticus 681]
          Length = 919

 Score =  246 bits (628), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 188/611 (30%), Positives = 294/611 (48%), Gaps = 118/611 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + +   VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRTTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFT+ G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S P+ GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++     +    GM+   V+     AK +R  +    + V V S  L  L Q    
Sbjct: 522 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLANTPLTV-VYSPDLATLPQAHYD 578

Query: 605 SKIINMILVEQEVW----EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 660
             +    + ++E      ++    +TL    +  L C  Q    +L             +
Sbjct: 579 ILLYAAPVTDREPLSMRHDQLARAATLTDCLILALPCHAQINAEML-----------KKE 627

Query: 661 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
           G S  + ++KP+ ++ L   L     +     I   ELP      + +   ++ VDDN  
Sbjct: 628 GAS--ACLLKPVTATRLMPLLLEHCRL-----IHARELPEGDQSRMPM--TVMAVDDNPA 678

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
           NLK+  A L+     VV  E G +A E  +L P   FD   MDIQMP+MDG  A ++IR+
Sbjct: 679 NLKLIGALLEDMVQHVVLCESGHQAVERAMLQP---FDIILMDIQMPDMDGIHACELIRK 735

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
           +                        H PI+A+TA  +    E+ L +GM+ Y++KP E E
Sbjct: 736 LPQ--------------------QQHTPIIAVTAHAMSGQKEKLLSAGMNDYLAKPIEEE 775

Query: 839 QLYREVSRFFP 849
           +L   + R+ P
Sbjct: 776 KLRALLLRYQP 786


>gi|380513218|ref|ZP_09856625.1| two-component system sensor-response regulator hybrid protein
            [Xanthomonas sacchari NCPPB 4393]
          Length = 1617

 Score =  246 bits (628), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 197/632 (31%), Positives = 294/632 (46%), Gaps = 102/632 (16%)

Query: 230  QATVNRIAKVEEDYHGMMEL-------KKKAEAADVAKSQFLATVSHEIRTPMNGVLGML 282
            Q  V R+  +  D    ++        K +A+ A  AKS FLA +SHEIRTPMN VLGML
Sbjct: 861  QGRVTRVIGINRDISAQLQAEQELRQAKARADEASQAKSSFLANMSHEIRTPMNAVLGML 920

Query: 283  DMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 342
             +L  T LD  Q DYV  AQ +GK+L+SL+N++LD +K+E+GKL+L+   F +  +L D+
Sbjct: 921  QLLQRTALDARQDDYVGKAQKAGKSLLSLLNDILDYSKIEAGKLQLDLHPFRIEELLRDL 980

Query: 343  LSLFSGKSQDKGVELAVYISDR-VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVY 401
              + +G  Q   VE+ VY  DR +P+ +IGD  R +Q++ NL GN++KFTE GH+ + V 
Sbjct: 981  AVVLAGNHQRPEVEI-VYQLDRGIPDRVIGDALRLQQVLINLAGNALKFTEHGHVRLRVE 1039

Query: 402  LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLI 461
            L++                                                  A  + L 
Sbjct: 1040 LLQR------------------------------------------------QAQAVTLR 1051

Query: 462  VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 521
            + VEDTG GI  E Q RIF  F Q   SISR  GG+G+GL IS+ L+G M GE+   S+ 
Sbjct: 1052 MIVEDTGIGISAEQQQRIFHSFTQAEASISRRFGGSGLGLVISRRLIGMMGGELQVHSVL 1111

Query: 522  NIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHI 581
              GS F F       ++   E  +     +P  V         LVVD   +  +V    +
Sbjct: 1112 GEGSRFWFDLPLALDANA--EAGTGCGCARPRHV---------LVVDDSALVREVLIDAL 1160

Query: 582  QRLGIQVEVVSDQLQCLSQIASGSKI---INMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638
               G +V+ V+   + ++   +  +     + +L++   W             LR + C 
Sbjct: 1161 GACGWRVDGVASGEEAVALALAAERKGARYDAVLMD---WRLPGIDGVTAAAQLRAM-CA 1216

Query: 639  FQSKLFLLANSISSSRANTSTDGVSIPSV--IMKPLRSSMLAASLQRAMGVGNKGNIRNW 696
                L L+  +  S     +   VS P    ++KP+    +  +L+RA   G +      
Sbjct: 1217 V-PPLVLMLTAYQSELLGQTQGHVSPPFADHLVKPVTPCQVIEALERAWNGGARIAAPA- 1274

Query: 697  ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ-F 755
             +P    R  L G ++L+V+DN +N +VA   L   GA V   E G    + +    Q F
Sbjct: 1275 TVPQRVAR--LPGLRVLVVEDNALNRQVAEELLCAEGAQVALAEDGLSGVQCVRESGQVF 1332

Query: 756  DACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815
            D   MD+QMP +DG EAT+ IR      + R  R               +PILAMTA+  
Sbjct: 1333 DVVVMDMQMPRVDGLEATRRIRA-----DARFAR---------------LPILAMTANAA 1372

Query: 816  QATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
            Q   + CL +GMD ++ KP + EQ+   + R 
Sbjct: 1373 QDDVDACLAAGMDAHIGKPIDLEQMVEALLRL 1404


>gi|57282048|emb|CAD24778.1| histidine kinase-like protein [Oryza sativa]
          Length = 182

 Score =  246 bits (628), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 118/182 (64%), Positives = 150/182 (82%), Gaps = 3/182 (1%)

Query: 330 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK 389
            V F+LR + DD+LSLF GK+Q+KG+ELAVY+SD+VP+ LIGDPGR RQIITNL+GNSIK
Sbjct: 2   TVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIK 61

Query: 390 FTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD--GST 447
           FTE+GHI++TV++VEEV+  +EVET + ++ NTLSGYPVA+R  SW+  + FN++   S 
Sbjct: 62  FTERGHIYLTVHVVEEVMSCLEVETGIQNT-NTLSGYPVANRRCSWESIRLFNRELHSSE 120

Query: 448 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 507
             F   ++D I+L++SVEDTG GIP EAQSR+FTPFMQVGPSI+R HGGTGIGLSI K L
Sbjct: 121 KSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSIXKCL 180

Query: 508 VG 509
           VG
Sbjct: 181 VG 182


>gi|429120378|ref|ZP_19181055.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
           sakazakii 680]
 gi|426325121|emb|CCK11792.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
           sakazakii 680]
          Length = 919

 Score =  246 bits (628), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 185/607 (30%), Positives = 295/607 (48%), Gaps = 110/607 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  + DKG+EL + +   VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFT+ G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S P+ GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++     +    GM+   V+     AK +R  +    + V V S  L  L Q    
Sbjct: 522 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLANTPLTV-VYSPDLASLPQAH-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
               +++L    V +++    ++  + L +        +  L      +      +G S 
Sbjct: 577 ---YDILLYAAPVTDREP--LSMRHDQLARAATFTDCLILALPCHAQINAEMLKKEGAS- 630

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KP+ ++ L   L     +     I   ELP      + +   ++ VDDN  NLK+
Sbjct: 631 -ACLLKPVTATRLMPLLLEHCRL-----IHARELPEGDQSRMPM--TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
             A L+     VV  E G +A E  +L P   FD   MDIQMP+MDG  A ++IR++   
Sbjct: 683 IGALLEDMVQHVVLCESGHQAVERAMLQP---FDIILMDIQMPDMDGIHACELIRQLPQ- 738

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                                H PI+A+TA  +    E+ L +GM+ Y++KP E E+L  
Sbjct: 739 -------------------QQHTPIIAVTAHAMSGQKEKLLSAGMNDYLAKPIEEEKLRA 779

Query: 843 EVSRFFP 849
            + R+ P
Sbjct: 780 MLLRYQP 786


>gi|419960003|ref|ZP_14476050.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
           cloacae GS1]
 gi|388605014|gb|EIM34237.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
           cloacae GS1]
          Length = 919

 Score =  246 bits (628), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 186/612 (30%), Positives = 296/612 (48%), Gaps = 120/612 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + +EL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L +  S DKG+EL + I + VP+ +
Sbjct: 343 TIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQTRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN      V+   +GM+   V+P    A+ +   +    ++V + S     L+     
Sbjct: 522 --PNVQTDGPVTGCLKGMRLAYVEPNAAAAQCTLDVLSSTPLEV-IYSPTFSALANDHYD 578

Query: 605 SKIINM-------ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 657
             ++ +       + ++QE   K  S++      L  L C  Q     L N         
Sbjct: 579 ILLLGIPVTFTGELTMQQERLAKAASMTDYL---LLALPCHAQINAEELKN--------- 626

Query: 658 STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDD 717
             DG +  + ++KPL ++ L  +L     + ++       LP  +  H  L   ++ VDD
Sbjct: 627 --DGAA--ACLLKPLTATRLLPALTEYCRLTHQS------LPLENDEH-KLPMTVMAVDD 675

Query: 718 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777
           N  NLK+    L+     V     G +A E      QFD   MDIQMP MDG  A ++IR
Sbjct: 676 NPANLKLIGVLLEDQVQHVELCTSGAEAVE-QAKQMQFDLILMDIQMPGMDGIRACELIR 734

Query: 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA 837
           ++ H                        P++A+TA  +    E+ L +GM+ Y++KP + 
Sbjct: 735 QLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMNDYLAKPIDE 774

Query: 838 EQLYREVSRFFP 849
           E+L+  + R+ P
Sbjct: 775 EKLHSLLLRYKP 786


>gi|389839777|ref|YP_006341861.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii ES15]
 gi|387850253|gb|AFJ98350.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii ES15]
          Length = 919

 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 185/607 (30%), Positives = 295/607 (48%), Gaps = 110/607 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  + DKG+EL + +   VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFT+ G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S P+ GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++     +    GM+   V+     AK +R  +    + V V S  L  L Q    
Sbjct: 522 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLANTPLTV-VYSPDLASLPQAH-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
               +++L    V +++    ++  + L +        +  L      +      +G S 
Sbjct: 577 ---YDILLYAAPVTDREP--LSMRHDQLARAATFTDCLILALPCHAQINAEMLKKEGAS- 630

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KP+ ++ L   L     +     I   ELP      + +   ++ VDDN  NLK+
Sbjct: 631 -ACLLKPVTATRLMPLLLEHCRL-----IHARELPEGDQSRMPM--TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
             A L+     VV  E G +A E  +L P   FD   MDIQMP+MDG  A ++IR++   
Sbjct: 683 IGALLEDMLQHVVLCESGHQAVERAMLQP---FDIILMDIQMPDMDGIHACELIRKLPQ- 738

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                                H PI+A+TA  +    E+ L +GM+ Y++KP E E+L  
Sbjct: 739 -------------------QQHTPIIAVTAHAMSGQKEKLLSAGMNDYLAKPIEEEKLRA 779

Query: 843 EVSRFFP 849
            + R+ P
Sbjct: 780 MLLRYQP 786


>gi|429081627|ref|ZP_19144729.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
           condimenti 1330]
 gi|426549762|emb|CCJ70770.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
           condimenti 1330]
          Length = 920

 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 189/616 (30%), Positives = 300/616 (48%), Gaps = 112/616 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + +   VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRNTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFT+ G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S P+ GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN+++         GM+   V+     AK +R  +    + VE  S +L  L +    
Sbjct: 522 --PNALADRHATDMLAGMRLAYVEKNEAAAKSTRDLLAHTPLTVE-YSPELATLPEAH-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
               +++L    V +++    T+  + L +        +  L      +      +G S 
Sbjct: 577 ---YDILLYAAPVTDREP--LTMRHDQLARAATLADCLILALPCHAQINAEMLKKEGAS- 630

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KP+ ++ L   L   +    K N R  ELP      L +   ++ VDDN  NLK+
Sbjct: 631 -ACLLKPVTATRLLPLL---LEQCRKKNAR--ELPGNGQGKLEM--TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
             A L+     VV  + G +A E   L P   FD   MDIQMP+MDG  A ++IR++   
Sbjct: 683 IGALLEDLVQRVVLCDSGHQAVERATLQP---FDIILMDIQMPDMDGIHACELIRKLPQ- 738

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                                H PI+A+TA  +    E+ L +GM+ Y++KP E E+L  
Sbjct: 739 -------------------QQHTPIIAVTAHAMSGQKEKLLSAGMNDYLAKPIEEEKLRA 779

Query: 843 EVSRFFP--PIPDRSP 856
            + R+ P   +P  +P
Sbjct: 780 LLLRYQPGYALPVNTP 795


>gi|146312879|ref|YP_001177953.1| hybrid sensory histidine kinase BarA [Enterobacter sp. 638]
 gi|145319755|gb|ABP61902.1| Hpt sensor hybrid histidine kinase [Enterobacter sp. 638]
          Length = 918

 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 185/614 (30%), Positives = 290/614 (47%), Gaps = 124/614 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + +EL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD++++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEIVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I V V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTENGNIDVLVEKRAISNNKLQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ L+  M G+I F S PN GSTF F         V  +G  T   
Sbjct: 475 ISRRHGGTGLGLVITQKLLKEMGGDISFHSQPNRGSTFWFHISLDLNPNVVTDGPMTHCL 534

Query: 543 HNSQQMNNQPNSVSSEFQGMKALVVDPRPI-------RAKVSRYHIQRLGIQVEVVSDQL 595
              +    +PN+ +++   +  L   P  +          V  Y I  +GI V    +  
Sbjct: 535 RGMRLAYVEPNAAAAQ-STLDVLSTTPLEVIYSPTFSALAVDHYDILLMGIPVTFTGE-- 591

Query: 596 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 655
                          + ++QE   K  S++      L  L C  Q     L N       
Sbjct: 592 ---------------LTMQQERLAKAASMTDYL---LLALPCHAQLNAEELKN------- 626

Query: 656 NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIV 715
               DG +  + ++KPL ++ L  +L           I +  LP     H  L   ++ V
Sbjct: 627 ----DGAA--ACLLKPLTATRLLPALTEYC------RINHHALPVAHDDH-KLPMSVMAV 673

Query: 716 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI 775
           DDN  NLK+    L+     V     G +A E      QFD   MDIQMP+MDG  A ++
Sbjct: 674 DDNPANLKLIGVLLEDQVQHVELCSSGAQAVE-HAKQMQFDLILMDIQMPDMDGIRACEL 732

Query: 776 IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
           IR++ H                        P++A+TA  +    E+ L +GM+ Y++KP 
Sbjct: 733 IRQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPI 772

Query: 836 EAEQLYREVSRFFP 849
           + E+L+  + R+ P
Sbjct: 773 DEEKLHSLLLRYKP 786


>gi|421846716|ref|ZP_16279862.1| hybrid sensory histidine kinase BarA [Citrobacter freundii ATCC
           8090 = MTCC 1658]
 gi|411772046|gb|EKS55693.1| hybrid sensory histidine kinase BarA [Citrobacter freundii ATCC
           8090 = MTCC 1658]
          Length = 918

 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 180/605 (29%), Positives = 288/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTEGGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN     S +    G +   V+P    A+ +   +    ++V + S     L +    
Sbjct: 522 --PNVLVDRSTTLCLAGKRLAYVEPNATAAQCTLDILSETPLEV-IYSPSFSGLPKDHYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             ++ + +  +E          L + + R       +   LLA    +            
Sbjct: 579 ILLLGIPVTLRE---------PLTMQHERLANAAAMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     V +  +        + L    +   ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQVNHSAD-------PLLLDDSKIAMTVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     VV  + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 683 IGALLEDKVQHVVLCDSGHQAVD-RARQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 738

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E ++L+  +
Sbjct: 739 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEDKLHNLL 781

Query: 845 SRFFP 849
            R+ P
Sbjct: 782 LRYKP 786


>gi|304320035|ref|YP_003853678.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
 gi|303298938|gb|ADM08537.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
          Length = 796

 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 189/618 (30%), Positives = 294/618 (47%), Gaps = 103/618 (16%)

Query: 239 VEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 298
           VEE    + E   KAEAA +AKS FLA +SHEIRTPMNGVLGM ++LM TELD  Q++ +
Sbjct: 245 VEERTADLEEAVTKAEAASLAKSAFLANMSHEIRTPMNGVLGMAELLMSTELDTYQRELI 304

Query: 299 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 358
            T  +SG +LV++IN++LD +K+E+GK  L    FNLR  +++V +L +G++ +K +EL 
Sbjct: 305 GTIMSSGTSLVTIINDILDFSKIEAGKFSLNEEPFNLREGIENVATLMAGRAAEKDLELF 364

Query: 359 VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 418
           V     +PE +  D GR RQ+ITNL+GN+IKFT++G + + V                  
Sbjct: 365 VRYDPSLPEGVFTDGGRLRQVITNLVGNAIKFTDEGQVLIDV------------------ 406

Query: 419 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 478
                                T  Q G T          ++L +SV DTG GIP E    
Sbjct: 407 ---------------------TGAQSGET----------VDLRISVTDTGIGIPPEKLEA 435

Query: 479 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS 538
           IF  F Q   + SR + GTG+GL+I K ++  M G+IG  S    G+TF F  +      
Sbjct: 436 IFEKFEQADNTSSRMYEGTGLGLAICKTIIELMGGKIGVTSELGRGATF-FIDI------ 488

Query: 539 TSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQL 595
             N     + + +P   ++E  G +  +VD      ++    +     ++   S   +  
Sbjct: 489 --NYKIDDRASLRPTIDTAELAGARIAIVDDNATNLRILSEQLAAWNTEIFAFSSGKEIF 546

Query: 596 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL------FLLANS 649
           Q L     G  + ++I+ + ++ E           N  +LG G +++        ++ +S
Sbjct: 547 QWLDSRGEGEALPDVIITDYQMPEM----------NGIELGLGIRARTGFPPIPIIMLSS 596

Query: 650 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA-MGVGNKGNIRNWELP------SMS 702
           + + +   S   + + + ++KP+RS  LA  +  A M  G  G++            S S
Sbjct: 597 VCAPKEEGSK-SLPLSAWLVKPIRSLQLAEYVFEAKMKTGRFGDVEALAEAKADRSISAS 655

Query: 703 LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 762
                +   IL+VDDN VN  V    LK +   ++    G+ A E     +  D  FMD+
Sbjct: 656 SDPDAICETILVVDDNLVNQLVITNMLKGWATEILTASNGEDAIEKF-SAYSPDIIFMDV 714

Query: 763 QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 822
            MP MDG EAT+ IR M               EA +N+     PI+  TA  +    + C
Sbjct: 715 SMPVMDGLEATRRIRGM---------------EADQNLPT--TPIVGATAHAMDEDRQRC 757

Query: 823 LRSGMDGYVSKPFEAEQL 840
           L++GM   ++KP   E +
Sbjct: 758 LKAGMVDVLTKPVRKESV 775


>gi|395234530|ref|ZP_10412754.1| hybrid sensory histidine kinase BarA [Enterobacter sp. Ag1]
 gi|394730976|gb|EJF30803.1| hybrid sensory histidine kinase BarA [Enterobacter sp. Ag1]
          Length = 918

 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 187/609 (30%), Positives = 293/609 (48%), Gaps = 114/609 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLALKTDLTPTQRDHLYTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 TIINDVLDFSKLEAGKLLLESIPFPLRNTLDEVVTLLAHSAHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q++TNL+GN+IKFTE G+I + V    E  + +++E ++    +T  G P  
Sbjct: 403 IGDPLRLQQVVTNLVGNAIKFTETGNIDLLVEKRAEGNNKVQIEMQI---HDTGIGIPEQ 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           ++   ++ F+                                             Q   S
Sbjct: 460 EQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSKPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSVS-----SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN+V+      +  G +   V+P    A+ +   +Q   + V V S  L  L      
Sbjct: 522 --PNAVNDRQVLDKLAGKRLGYVEPNATAAQSTLNLLQNTPLDV-VHSPSLTGLP----- 573

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
            +  +++L    V    T   TL + N +       +   +LA    +           +
Sbjct: 574 DEHYDILLCGIPV----TFTETLTLANPKLAKAVTMADCLILALPCHTQVGAEELKRQGV 629

Query: 665 PSVIMKPLRSS----MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
              ++KP+ S+    ML  S  +A          N  LP +      L   ++ VDDN  
Sbjct: 630 AGCLLKPITSTRLFPMLLESCPKA----------NLALPFVEHSD-KLPMAVMAVDDNPA 678

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           NLK+  A L+     VV  E G +A E        D   MDIQMPEMDG  A ++IR++ 
Sbjct: 679 NLKLIGALLEDRVQQVVLCESGTQALERAR-QMNIDIILMDIQMPEMDGIRACELIRQLP 737

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
           H                    +   P++A+TA  +    E+ + +GM+ Y++KP E E+L
Sbjct: 738 H--------------------HQQTPVIAVTAHALAGQKEKLMSAGMNDYLAKPIEEEKL 777

Query: 841 YREVSRFFP 849
           +R + R+ P
Sbjct: 778 HRLLMRYHP 786


>gi|429116659|ref|ZP_19177577.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
           sakazakii 701]
 gi|449307057|ref|YP_007439413.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii SP291]
 gi|426319788|emb|CCK03690.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
           sakazakii 701]
 gi|449097090|gb|AGE85124.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii SP291]
          Length = 919

 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 185/607 (30%), Positives = 295/607 (48%), Gaps = 110/607 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  + DKG+EL + +   VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFT+ G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S P+ GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++     +    GM+   V+     AK +R  +    + V V S  L  L Q    
Sbjct: 522 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLANTPLTV-VYSPDLASLPQAH-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
               +++L    V +++    ++  + L +        +  L      +      +G S 
Sbjct: 577 ---YDILLYAAPVTDREP--LSMRHDQLARAATFTDCLILALPCHAQINAEMLKKEGAS- 630

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KP+ ++ L   L     +     I   ELP      + +   ++ VDDN  NLK+
Sbjct: 631 -ACLLKPVTATRLMPLLLEHCRL-----IHARELPEGDQSRMPM--TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
             A L+     VV  E G +A E  +L P   FD   MDIQMP+MDG  A ++IR++   
Sbjct: 683 IGALLEDMVQHVVLCESGHQAVERAMLQP---FDIILMDIQMPDMDGIHACELIRKLPQ- 738

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                                H PI+A+TA  +    E+ L +GM+ Y++KP E E+L  
Sbjct: 739 -------------------QQHTPIIAVTAHAMSGQKEKLLSAGMNDYLAKPIEEEKLRA 779

Query: 843 EVSRFFP 849
            + R+ P
Sbjct: 780 MLLRYQP 786


>gi|359779983|ref|ZP_09283210.1| sensor/response regulator hybrid [Pseudomonas psychrotolerans L19]
 gi|359372599|gb|EHK73163.1| sensor/response regulator hybrid [Pseudomonas psychrotolerans L19]
          Length = 922

 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 183/601 (30%), Positives = 278/601 (46%), Gaps = 91/601 (15%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +K A  A   KS+FLA +SHEIRTP+NG++G  +++  +EL   QQDY+ T Q S ++L+
Sbjct: 276 RKAALEASRIKSEFLANMSHEIRTPLNGIIGFTNLMQKSELTPRQQDYLSTIQNSAESLL 335

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +INE+LD +K+E+GKL LE + FNLR ++ D L++ +  + +K +EL   +    P  L
Sbjct: 336 GIINEILDFSKIEAGKLVLENLPFNLRDMIQDTLTILAPSAHEKHLELVCLVYRDTPTHL 395

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R RQ++TNL+ N+IKFT  G I V   + EE  D  +                  
Sbjct: 396 VGDPQRLRQVLTNLVSNAIKFTHSGTIAVRAMVEEETDDHAQ------------------ 437

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                         L +SV+DTG G+  E +  +F  F Q   S
Sbjct: 438 ------------------------------LRISVQDTGVGLTDEDRQMLFQAFSQADNS 467

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ++R  GGTG+GL ISK L+ +M GEIG  SIP  GS F  T        +   H      
Sbjct: 468 LTRQAGGTGLGLVISKRLIEQMGGEIGLESIPGEGSEFWITLNLPKAHGSVESHK----- 522

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS--DQL-QCLSQIASGSK 606
                      G +  +V+P P+  +  ++ ++  G+ VE     +QL + ++  ASG  
Sbjct: 523 ------RIALAGRRVGLVEPHPLTRQALQHQLEECGLSVEPFETLEQLSEAVAHPASGKL 576

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
            +++ ++          + T  +  L +  C            +     + +    S+P 
Sbjct: 577 PVSLAVLGVSARSIPPDLLTERIWELGRQDCN---------TLVYCPTTDQAVFHASLPD 627

Query: 667 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
           V  +    S  A S +    V    N R     S  L       ++L VDDN  NL +  
Sbjct: 628 VHCQ--LHSKPACSRKLEQAVAELLNQRPQRNESGGLGITDRPPRLLCVDDNPANLLLVE 685

Query: 727 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
             L   GA V  VE G  A E +    +FD  FMD+QMP MDG +AT+ IR+        
Sbjct: 686 TLLTDLGAQVTAVESGYAAVEAVQ-QERFDLVFMDVQMPGMDGRQATEAIRDW------- 737

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
                   EA E  +   VPI+A+TA  +       L+SGMD Y++KP    QL + + +
Sbjct: 738 --------EASEGGTP--VPIVALTAHAMANEKRALLQSGMDDYLTKPISDRQLAQVILK 787

Query: 847 F 847
           +
Sbjct: 788 W 788


>gi|89075083|ref|ZP_01161524.1| putative sensor histidine kinase/response regulator [Photobacterium
           sp. SKA34]
 gi|89049170|gb|EAR54735.1| putative sensor histidine kinase/response regulator [Photobacterium
           sp. SKA34]
          Length = 929

 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 190/624 (30%), Positives = 293/624 (46%), Gaps = 126/624 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L+ +Q+DY+ T + S   L+
Sbjct: 280 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTKLNTSQKDYLLTIENSANNLL 339

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+E+GKL LE + F+    LD+V+ L +  + +KG+EL + I DR+P  L
Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRLLAPSAHEKGLELTLKIDDRIPAGL 399

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q++TNL+GN++KFTE G+I V+V L  +V ++I ++                
Sbjct: 400 IGDPLRIQQVVTNLIGNAVKFTEHGNIDVSVELKSDVDNNIALQ---------------- 443

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                             V DTG GI    Q+++F  F Q   S
Sbjct: 444 --------------------------------FMVRDTGIGISERQQAQLFQAFSQADAS 471

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR +GGTG+GL I++ LV +M GE+   S  + GSTF FT                QMN
Sbjct: 472 ISRRYGGTGLGLVITQKLVSQMGGEVSLTSRLHQGSTFWFTI---------------QMN 516

Query: 550 NQPNSVS-----SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ---------- 594
                VS     +  QG   L+V+     A V +  +   GI V   +            
Sbjct: 517 KTDLPVSQPINTTALQGKSLLLVEANMQAASVIQQRLMLAGIHVTYRASMPDDIDHHDFA 576

Query: 595 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 654
           L CLS        + +IL   +V++ + +   + V       C       L    ++ S 
Sbjct: 577 LLCLS--PGEQPPLPVIL--NDVFKAEQTADKVLV-------C-------LPTTELALSE 618

Query: 655 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM-SLRHLLLGRKIL 713
             T T    + + + KPL        L  A+   +   +   E+P + ++   L    ++
Sbjct: 619 KLTQT---GVYACLGKPLAQR----KLLEALCDNDDEPLSELEVPLLPTVVEKLQPLTVM 671

Query: 714 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
            VDDN  NLK+ +A L      V+    GKKA E       FD  FMDIQMPEMDG  A 
Sbjct: 672 AVDDNPANLKLISALLGERVETVITATGGKKAVE-YAKNKAFDLIFMDIQMPEMDGVTAC 730

Query: 774 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
           + I +   N N                     P++A+TA  +    E  + +GMD Y++K
Sbjct: 731 QKIHDTALNHN--------------------TPVIAVTAHAMAGERERLINAGMDDYLTK 770

Query: 834 PFEAEQLYREVSRFFPP-IPDRSP 856
           P E   L + ++++  P  P  +P
Sbjct: 771 PIEEHILQQILAKWIAPTTPQATP 794


>gi|239787643|emb|CAX84111.1| Sensor protein [uncultured bacterium]
          Length = 1221

 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 184/599 (30%), Positives = 283/599 (47%), Gaps = 81/599 (13%)

Query: 253 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
           AE +   KSQFLA +SHEIRTP+N V+GM  +L  T L   QQDY+  A     +L+ LI
Sbjct: 467 AEESSRTKSQFLANMSHEIRTPINAVMGMHYLLQQTLLTDQQQDYLDKADNGAHSLLGLI 526

Query: 313 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
           N++LD +K+E+GKLE+EA+ F L  +L+++  + SG ++ K +EL + I   VP+ L+GD
Sbjct: 527 NDILDFSKIEAGKLEIEAIDFQLSDMLENLADITSGITRKKNIELVITIPPDVPDHLVGD 586

Query: 373 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 432
           P R  QI+ NL+ N+ KFT +G + V+V                                
Sbjct: 587 PTRLGQILLNLVSNAAKFTAEGMVLVSV-------------------------------- 614

Query: 433 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492
                          + F +   D + L  +V DTG G+  E   ++F  F Q   S  R
Sbjct: 615 ---------------TGFTALPDDQVELRFAVRDTGIGMTPEQLGKLFQAFTQADSSTVR 659

Query: 493 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 552
             GGTG+GL+ISK LV +M G I   S+   GS FTFTA  G G  T       +    P
Sbjct: 660 KFGGTGLGLTISKQLVEKMGGAIEATSMAGEGSEFTFTARLGRGEDT-------RAFVVP 712

Query: 553 NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMIL 612
                   G +AL+VD   +   V R  +   G+ V  V      L+++ + +   +++L
Sbjct: 713 ---VDRLTGRRALIVDDLALSCDVLRDVMTNFGLSVTTVKSGQAALAELTTTASPFDVVL 769

Query: 613 VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL 672
           ++   W          + N+R         L L+        A      + +  +++KP+
Sbjct: 770 LD---WHMPGMGGAELIRNIRGNPQVASVPLVLMVTPFGQEEALDGMRDLELDGLLVKPI 826

Query: 673 RSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRY 732
             S+L  S+  A+G+G +   R         ++ L GR IL+ +DN +N ++A A L   
Sbjct: 827 LPSVLLESILGALGLGERKKRRGKGRKQSGPQNRLQGRHILLAEDNEINQEIAQAILSGE 886

Query: 733 GAAVVCVERGKKATELLMPPHQ-FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 791
           GAAV     G  A   +    + FD   MDI MP MDG+EAT  IR              
Sbjct: 887 GAAVRIAADGVAALSAVESSDRPFDVVLMDIHMPVMDGYEATSRIR-------------- 932

Query: 792 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
            +I A+ +     +PI+AMTA  +    E+CL  GM+ +++KP +  Q+   + ++  P
Sbjct: 933 -AIPAHAD-----LPIIAMTASAMVEEREKCLAVGMNDHIAKPIDVGQMLSTLDQWMRP 985


>gi|398885503|ref|ZP_10640413.1| PAS domain S-box [Pseudomonas sp. GM60]
 gi|398192413|gb|EJM79568.1| PAS domain S-box [Pseudomonas sp. GM60]
          Length = 1516

 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 187/609 (30%), Positives = 290/609 (47%), Gaps = 104/609 (17%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            ++  K++A+ A  AKS FLA +SHEIRTPMN VLGML ++ +T+L+  Q DYV  AQA+ 
Sbjct: 773  LLYAKEQADTASAAKSSFLANMSHEIRTPMNAVLGMLQLVQNTDLNGRQLDYVTKAQAAA 832

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            K+L+ L+N++LD +K+E+GKL+L+   F L  ++ D+  + +G    K VE+   +   +
Sbjct: 833  KSLLGLLNDILDYSKIEAGKLQLDVHPFELEPLMRDLAVVLAGNQGQKEVEVMFDLDSNL 892

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  LIGD  R +Q++ NL GN++KFT +G I V+V              +L  ++N+L  
Sbjct: 893  PNDLIGDSLRLQQVLINLAGNALKFTMEGQIVVSV-------------EQLMRTENSL-- 937

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                              L ++V DTG GI  E    IF  F Q
Sbjct: 938  ---------------------------------KLRIAVSDTGIGISPEQLQHIFEGFTQ 964

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               S +R  GGTG+GL I K LV  M GE+   S   +GS F F                
Sbjct: 965  AEASTTRRFGGTGLGLVICKRLVSLMGGELQVESQQGVGSRFWFDIT------------- 1011

Query: 546  QQMNNQPNS-VSSEFQGMKA----LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQ 600
              ++  PNS + S+  G+ A    LVVD   +  ++    +  LG + + VS   Q +  
Sbjct: 1012 --LDVAPNSLLRSDSSGVDASIRILVVDDNAMAGELLLRTVHALGWKADHVSGGTQAVEW 1069

Query: 601  IASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 657
            + +     +  +++L++  + + D   +   +   R+ G G    + ++  +        
Sbjct: 1070 VKNAQARGEAYDVVLMDWRMSDMDGLSAAQLI---RQQGNGVPPPMVIMITAYGREVLAD 1126

Query: 658  STDGVSIPSV--IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL---RHLLLGRKI 712
            + +    P V  + KP+    LA ++QRA+     G      LPS S       L G ++
Sbjct: 1127 ANEMGDAPFVGFLTKPVTPKQLADAVQRAL----NGKGLPQSLPSKSTVDRPQRLAGLRL 1182

Query: 713  LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQMPEMDGFE 771
            L+V+DN +N +VA   L   GA V   E G +    +M  +  FDA  MDIQMP++DG E
Sbjct: 1183 LVVEDNMLNRQVADELLTGEGAQVTLAEGGLEGVSRVMAENVSFDAVLMDIQMPDIDGLE 1242

Query: 772  ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
            AT+ IR                     N     +PI+AMTA+      + CL +GM+ +V
Sbjct: 1243 ATRRIR--------------------SNPRFAALPIVAMTANASSTDRDACLAAGMNEHV 1282

Query: 832  SKPFEAEQL 840
             KP + EQL
Sbjct: 1283 GKPIDLEQL 1291


>gi|334117454|ref|ZP_08491545.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
 gi|333460563|gb|EGK89171.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
          Length = 1830

 Score =  246 bits (627), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 205/731 (28%), Positives = 326/731 (44%), Gaps = 150/731 (20%)

Query: 212  ISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEI 271
            ++  +GI +  +    + +  V R  ++ E    + + ++ AE A+ AKS+FLAT+SHEI
Sbjct: 997  VAAQVGITLAQA---QLLETEVQRQRQLAEQNEALDQARQAAEVANRAKSEFLATMSHEI 1053

Query: 272  RTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 331
            RTPMN V+GM  +L+D EL   Q+D+V T + SG AL+++IN++LD +K+ESGKL+LE  
Sbjct: 1054 RTPMNAVIGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLDLERS 1113

Query: 332  SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT 391
             F L+  +++ L L + ++ +KG+ELA +I D VP+ ++GD  R RQI+ NL+GN++KFT
Sbjct: 1114 PFELQNCIEESLELLAPRASEKGLELAYFIDDSVPKNILGDVTRLRQILVNLLGNAVKFT 1173

Query: 392  EKGHIFV--TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 449
            E G I V  T   +E+V  +   +       N L+  P+A            NQ      
Sbjct: 1174 ESGEIVVCCTARQIEQVAANSSPD-----RINILAPQPLA-----------INQG----- 1212

Query: 450  FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLS------- 502
             + + +    +  +V+DTG GIP +   R+F  F QV  S +R +GGTG+GL+       
Sbjct: 1213 -ELARSRQYEIQFAVQDTGIGIPPDRMDRLFKAFSQVDASTTRHYGGTGLGLAISQRLSD 1271

Query: 503  -------------------------ISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
                                     I + + GR   E    SI   GS F FT       
Sbjct: 1272 MMGGTMWVVSQVTPGSSKSQPAVSAIGQSIAGRSPAEFTPPSISGSGSIFYFTV------ 1325

Query: 538  STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
             T+  ++ +    +P   +    G + L+V+   I  +V     +  G+    V+   + 
Sbjct: 1326 -TAEANDIRAEEKRPEFAA----GKRLLIVEHHAINRQVLIRQAESWGMIPVAVTSGAEA 1380

Query: 598  LSQIASGSKIINMILVEQEVWEKDT----------SVSTL----------FVNNLRKLGC 637
            L +I  G   +++ ++   + + D            +S L           V N RK+  
Sbjct: 1381 L-EIIKGDSPLDLAILAMNLPDMDGVALAVEIRKFELSNLSGGDGLNPNGIVKNTRKIAL 1439

Query: 638  GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV----GNKGNI 693
                  +L   S +       T  V   + + KPL+ S     L +  G       +G +
Sbjct: 1440 PLVLFTYL---SKAEVWKKLETTEVHFSAFLTKPLKQSQFYNVLLQVFGYVTGRSGRGEV 1496

Query: 694  RNWELPSMSLRHLLLGR------------------------------KILIVDDNNVNLK 723
             N    +  L++    +                              +IL+ +DN VN K
Sbjct: 1497 SNVATLTSGLKYFENSQEQHRVQRTPAVLRQVAANSAGQDAANSSQIRILLAEDNVVNQK 1556

Query: 724  VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATK-IIREMEHN 782
            VA   L R G        G +  E L     +D   MD+QMP MDG EAT+ I +E   N
Sbjct: 1557 VATHLLDRIGYRADIAANGLEVLEALKR-QSYDVVLMDVQMPNMDGLEATRRICQEWPAN 1615

Query: 783  FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
               RI                    +AMTA+ +Q   E+CL +GMD Y++KP   E+L  
Sbjct: 1616 KKPRI--------------------IAMTANAMQGDREKCLEAGMDDYITKPVRREELAI 1655

Query: 843  EVSRFFPPIPD 853
             +S+  P I D
Sbjct: 1656 ALSKCSPLIRD 1666



 Score = 39.7 bits (91), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 7/151 (4%)

Query: 709  GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768
            G+++LIV+ + +N +V     + +G   V V  G +A E++      D   + + +P+MD
Sbjct: 1344 GKRLLIVEHHAINRQVLIRQAESWGMIPVAVTSGAEALEIIKGDSPLDLAILAMNLPDMD 1403

Query: 769  GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMT----ADVIQATYEECLR 824
            G      IR+ E + N     G       +N     +P++  T    A+V +    E   
Sbjct: 1404 GVALAVEIRKFELS-NLSGGDGLNPNGIVKNTRKIALPLVLFTYLSKAEVWKKL--ETTE 1460

Query: 825  SGMDGYVSKPFEAEQLYREVSRFFPPIPDRS 855
                 +++KP +  Q Y  + + F  +  RS
Sbjct: 1461 VHFSAFLTKPLKQSQFYNVLLQVFGYVTGRS 1491


>gi|414176745|ref|ZP_11430974.1| PAS domain S-box protein [Afipia broomeae ATCC 49717]
 gi|410886898|gb|EKS34710.1| PAS domain S-box protein [Afipia broomeae ATCC 49717]
          Length = 751

 Score =  245 bits (626), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 184/616 (29%), Positives = 290/616 (47%), Gaps = 108/616 (17%)

Query: 241 EDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRT 300
           E    + E +  A +A+ AKS+FLA  SHEIRTP+NG++GM ++L+DTEL   Q  Y + 
Sbjct: 213 ETERALAEARDLANSANRAKSKFLAMASHEIRTPLNGIIGMSNLLLDTELTPEQATYAKA 272

Query: 301 AQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVY 360
            + SG AL++LI+E+LD +K+E+GK++LE   F L A+++++  L + ++Q + +E+A Y
Sbjct: 273 VKTSGDALMALIDELLDFSKIEAGKIDLEYRPFTLAAMIEEITELLAPRAQARKLEIASY 332

Query: 361 ISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSK 420
           + +R+P  +IGD  R RQ++ NL GN+IKFT  G +     +VE  +             
Sbjct: 333 VDERLPAEVIGDAARLRQVLLNLAGNAIKFTSVGGV---ALIVEPGI------------- 376

Query: 421 NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 480
                         W G  +F                      V DTG GI  EAQ RIF
Sbjct: 377 --------------WPGEVSF---------------------LVRDTGIGIAPEAQQRIF 401

Query: 481 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT---AVFGNGS 537
             F Q    I+R +GGTG+GLSIS+ +V RM G I   S    G+TF F+   AV   G 
Sbjct: 402 REFEQASEGIARNYGGTGLGLSISERIVRRMGGRITLESAEGAGATFAFSIPLAVAEPGH 461

Query: 538 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
           S+++             ++ +  G   ++V P+ I A +    + R G Q   V+D    
Sbjct: 462 SSASPF-----------LAPDLTGKSVMLVAPQTIEASLIARRLGRWGAQTCTVAD---- 506

Query: 598 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRAN 656
                  + I   +L E+  W    +  T     L+             +A    S+R +
Sbjct: 507 -------ADIARALLPERS-WYAVLADCTGSDTRLQDFAAAASHHATHRIAMFTPSARRD 558

Query: 657 TSTDGVSI-PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----- 710
             T  +++    ++KPLR++ LAA L  A G      +     P++    ++  +     
Sbjct: 559 IPTGIMALFTGYLVKPLRATSLAARLS-ASGAALVPELPGDNEPAIEPSSIVSPQTVAPR 617

Query: 711 --KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH----QFDACFMDIQM 764
              IL+ +DN +N  +  + L R G   V    G++A E  +        +D   MDIQM
Sbjct: 618 ALSILVAEDNEINALLIRSLLTRMGHRAVITTDGEQALESWIAADGAGTPYDVVLMDIQM 677

Query: 765 PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 824
           P++DG  ATK IR +E   + R                    ILA+TA+ +      C  
Sbjct: 678 PKLDGIAATKRIRALEAERSPR-----------------RTKILALTANTLVDDRYACFE 720

Query: 825 SGMDGYVSKPFEAEQL 840
           +GMDG++ KP + ++L
Sbjct: 721 AGMDGFLVKPLDRDKL 736


>gi|392539812|ref|ZP_10286949.1| sensor protein [Pseudoalteromonas marina mano4]
          Length = 1118

 Score =  245 bits (626), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 191/641 (29%), Positives = 305/641 (47%), Gaps = 104/641 (16%)

Query: 218  ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 277
            ++ +A+L+G +  ++  RI   +E    ++E K+ AE A  AKS+FLAT+SHEIRTPMNG
Sbjct: 570  LITVATLIGSL-HSSQQRIEAEQE----LVEAKELAEQAVAAKSEFLATMSHEIRTPMNG 624

Query: 278  VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337
            VLGML+++  T+LD  Q  ++  AQ+S ++L+++IN++LD +K+E+GKL ++++ FNL  
Sbjct: 625  VLGMLNIIKQTKLDQQQAHHIELAQSSAESLLNIINDILDFSKMEAGKLNIDSIQFNLPK 684

Query: 338  ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 397
            +L +V+  F+ K +    +L +  +      +I DP R RQI+ NL+GN++KFT+ G + 
Sbjct: 685  LLGEVVESFALKVEQNNTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTKNGDVI 744

Query: 398  VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 457
            +    +  V DS                                  DGS           
Sbjct: 745  I----IARVDDST---------------------------------DGSF---------- 757

Query: 458  INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 517
              L  SV DTG GI    Q+ +F  F Q   S +R  GGTG+GL+I K L   M G +  
Sbjct: 758  --LECSVIDTGIGINKNQQTSLFNSFTQADTSTTRQFGGTGLGLTIVKQLCELMGGSVSV 815

Query: 518  VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 577
             S+   GSTF+F+       S   +  S  +NN+           + L +D   +   ++
Sbjct: 816  NSVEGEGSTFSFSVKIQPRLSKEQDLPSHLINNK-----------RILFIDECHLNTSIA 864

Query: 578  RYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637
               +   G  VE ++D  + L  +   +   + ILV+   +       T  + N  K   
Sbjct: 865  TKQLTIWGAHVEFINDYNEVLIHLEETTHSYDAILVDYHFFSVAAKTQTTALQNFIK--- 921

Query: 638  GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 697
             F+ K  ++A    S +   ST  +++  +I KPL  S L  SL     +         +
Sbjct: 922  KFKCKSVIMAPMSYSQKE--STLKMNVDCMIFKPLTPSDLFDSLTNEKFLEQ-------Q 972

Query: 698  LPSMSLRHLLLGRKI--------LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 749
            L    L + L    I        L+V+DN +N  VA+A LK  G      E G++A   L
Sbjct: 973  LNQAQLTNTLTKAPIKDSSEPVLLLVEDNKINQVVASALLKEAGVIFDIAENGEQAISKL 1032

Query: 750  MPPHQ--FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPI 807
                   +    MD QMP MDG++AT+ IR+           G    E Y  VS     I
Sbjct: 1033 NAKQNNPYKLILMDCQMPIMDGYQATQAIRQ-----------GGAG-EKYNAVS-----I 1075

Query: 808  LAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            +A+TA+ +Q   E+C+ +GMD Y++KP +   L  ++  + 
Sbjct: 1076 IALTANAMQGDREKCIAAGMDDYLTKPLDMAALKPKLQHWL 1116


>gi|428218985|ref|YP_007103450.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
 gi|427990767|gb|AFY71022.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
          Length = 1627

 Score =  245 bits (626), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 189/635 (29%), Positives = 292/635 (45%), Gaps = 124/635 (19%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++AEAA+ AKS+FLA +SHEIRTPMN V+GM  +LMDT+L   Q+D+  T + S  AL+
Sbjct: 914  KQEAEAANKAKSEFLANMSHEIRTPMNAVIGMSGLLMDTQLSPEQRDFAETIRNSADALL 973

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            ++IN++LD +K+ESGKL LE   F L   ++  + L + +  +KG+E+A ++  +VP  +
Sbjct: 974  TIINDILDFSKIESGKLTLEEQPFALLDCIEATVDLMAAQVANKGLEIATWVDTQVPSVI 1033

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GD  R RQI+ NL+GN+IKFTE+G I ++    E   +  E+                 
Sbjct: 1034 KGDVTRLRQILVNLLGNAIKFTEQGEIIISAIARELTAEQYEIH---------------- 1077

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                             +V+DTG GI  E+ +R+F  F Q   S
Sbjct: 1078 --------------------------------FAVKDTGIGIAPESMNRLFESFSQADTS 1105

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ-- 547
            I+R +GGTG+GL+IS+ L   M G +   S   +  T T  A       +   H+ +Q  
Sbjct: 1106 ITRKYGGTGLGLAISQKLCRLMGGNMWVESNGVVAGTPTTDAWRSLWQDSPILHDRKQEH 1165

Query: 548  --------------MNNQPNSVSSEFQ---GMKALVVDPRPIRAKVSRYHIQRLGIQVEV 590
                          +NN+   +S +     G + LVVD      ++ R   Q   +Q + 
Sbjct: 1166 PGTTFYFSITTAKVLNNELEKLSHQTHSLIGKRLLVVDDNATNCQILRLQAQFWQMQTQT 1225

Query: 591  VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG--------FQSK 642
             +D  Q LS           IL +    E D +V  + +  L  L           +   
Sbjct: 1226 FNDPDQALS-----------ILKQSPRSEFDLAVLDMQMPGLDGLSLAIAIAQLEHYADL 1274

Query: 643  LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS 702
              ++ +S S   + +      I + + KP++ S L  +L +A        +R      +S
Sbjct: 1275 PIIILSSASDLLSPSDRQKYPIVNFLRKPVKQSQLYNALLQA--------VRPEISSPVS 1326

Query: 703  LRHLL----------LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 752
            LR  L          L  +IL+ +DN VN KVA    KR G     V  G +A   +   
Sbjct: 1327 LRTKLTNNYQNLATDLPLRILLAEDNLVNQKVALNMFKRLGYRADVVANGLEAVTTVQQL 1386

Query: 753  HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA 812
            H +D  FMD+QMPEMDG EAT+ +R+     +                   +  I+AMTA
Sbjct: 1387 H-YDVVFMDMQMPEMDGLEATRSLRQQTGRQD-------------------YPWIIAMTA 1426

Query: 813  DVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
            + ++   + CL +GM+ Y+SKP   E +   + RF
Sbjct: 1427 NALKGDRQRCLDAGMNDYISKPVYLEAIIEALYRF 1461


>gi|254457369|ref|ZP_05070797.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
 gi|373867994|ref|ZP_09604392.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
 gi|207086161|gb|EDZ63445.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
 gi|372470095|gb|EHP30299.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
          Length = 733

 Score =  245 bits (626), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 194/662 (29%), Positives = 316/662 (47%), Gaps = 106/662 (16%)

Query: 190 DPFRKHEMRCRFKQKA----PWPLLAISTSIGILVIASLVGHIFQATV-NRIAKVEEDYH 244
           + + + ++   +K+K      +  L I  SI IL++A+L  ++F   + N I  +  +  
Sbjct: 159 NEYIRFQLALAYKKKVNSDYKYLQLIIYASIFILLMATLF-YLFAVKIKNNINTLSRE-- 215

Query: 245 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            ++E K+ AE +   K+ FLA++SH+IRTPMNGV+GML +LM+++LD TQ+     A++S
Sbjct: 216 -LVEAKEIAEESVKTKAIFLASMSHDIRTPMNGVIGMLGLLMNSKLDDTQKHQASLAKSS 274

Query: 305 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
            KAL+SLIN++LD +KVE+GK++LE + FN+R  L D     + ++Q+KGVEL + ++D 
Sbjct: 275 AKALLSLINDILDFSKVEAGKMDLEYIDFNIRDELGDFAEGIAFRAQEKGVELILEVTDI 334

Query: 365 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
               +  DPGR RQI++N++GNSIKFT +G I      ++ ++D  E             
Sbjct: 335 EQNMIKADPGRIRQILSNIVGNSIKFTSEGFI-----AIKAILDVTE------------- 376

Query: 425 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
             P   R                            LI+ + D+G GIP +    +F  F 
Sbjct: 377 --PTDAR----------------------------LIIEMSDSGIGIPEDKIDTLFDSFS 406

Query: 485 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT--FTAVFGNGSSTSNE 542
           QV  S +R +GGTG+GL+I + L   M G++   S    GS FT   +       S +  
Sbjct: 407 QVDASTTRKYGGTGLGLAIVEKLCELMNGKVEVKSDFGKGSIFTIDISVELSQDRSLAIP 466

Query: 543 HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA 602
           HNS              +  K L++D      +  +  +Q  G++V    D  + L  + 
Sbjct: 467 HNS-------------VKDKKILIIDDSKFSIEAMKKQLQHWGMKVYSAIDSKEALKMLQ 513

Query: 603 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
             S   ++  +++ + + +   S      +RK    + S   ++  S+       S   +
Sbjct: 514 DDS--FDIAFIDRVIPDMN---SEELAKTIRK-NTAYSSMKIIMMTSLIDRVDAISYRNI 567

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGN---KGNIRNWELPSMSLRHLLLGRKILIVDDNN 719
            I     KP  +  L  +L       N     NI   + P       +    IL+V+DN 
Sbjct: 568 GIDGFFPKPATTKDLFKALDTLFKDDNFFSSENIEEEQDP-------IFESNILLVEDNI 620

Query: 720 VNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQMPEMDGFEATKIIRE 778
            N  VA   L+ +G        G +A E+L     +++  FMD QMPE+DG+ AT+ I  
Sbjct: 621 TNQLVANGMLEDFGLEADIANNGIEALEMLNSSSKKYNLIFMDCQMPELDGYGATQAI-- 678

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
                     R E + E Y N     +PI+AMTA+ +Q   E+C  +GM  Y++KP + E
Sbjct: 679 ----------RAEQAGERYTN-----IPIIAMTANAMQGDQEKCRSAGMSDYLAKPIDKE 723

Query: 839 QL 840
            L
Sbjct: 724 LL 725



 Score = 47.0 bits (110), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 25/155 (16%)

Query: 694 RNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH 753
           R+  +P  S++     +KILI+DD+  +++     L+ +G  V      K+A ++L    
Sbjct: 461 RSLAIPHNSVKD----KKILIIDDSKFSIEAMKKQLQHWGMKVYSAIDSKEALKML-QDD 515

Query: 754 QFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD 813
            FD  F+D  +P+M+  E  K IR+                    N +   + I+ MT+ 
Sbjct: 516 SFDIAFIDRVIPDMNSEELAKTIRK--------------------NTAYSSMKIIMMTSL 555

Query: 814 VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           + +         G+DG+  KP   + L++ +   F
Sbjct: 556 IDRVDAISYRNIGIDGFFPKPATTKDLFKALDTLF 590


>gi|386815513|ref|ZP_10102731.1| multi-sensor hybrid histidine kinase [Thiothrix nivea DSM 5205]
 gi|386420089|gb|EIJ33924.1| multi-sensor hybrid histidine kinase [Thiothrix nivea DSM 5205]
          Length = 943

 Score =  245 bits (626), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 181/634 (28%), Positives = 312/634 (49%), Gaps = 104/634 (16%)

Query: 228 IFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 287
           +F   +  I+   E    + + +  A  +   KS+FLA +SHEIRTPMNGV+GM ++L+ 
Sbjct: 391 VFTGIIRDISHRIEAQQELAKARDAALESARLKSEFLANMSHEIRTPMNGVIGMTELLLG 450

Query: 288 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 347
            +L+  Q+D VRT Q S ++L+S+IN++LD +K+E+GKL +    F L  I++ V+ L  
Sbjct: 451 GKLNREQRDQVRTVQHSAESLLSIINDILDFSKIEAGKLSISNTQFELLPIIESVMDLLM 510

Query: 348 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 407
             +Q KG+ELA +I   VP+ ++ DP R RQI+ NL+ N+IKFTE+G++ +        +
Sbjct: 511 EDAQTKGIELAFFIDHNVPKAMVSDPVRMRQILLNLLSNAIKFTERGYVILK-------I 563

Query: 408 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 467
            ++++E         L                                        V DT
Sbjct: 564 STLDLECRPPGEAQQLR-------------------------------------FEVLDT 586

Query: 468 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
           G GIP EAQ+++F  F QV  S++R +GGTG+GL+ISK L   M G IG +S   +GS+F
Sbjct: 587 GCGIPEEAQAKLFRAFSQVDGSVTRQYGGTGLGLAISKQLAQLMGGGIGLLSKVGVGSSF 646

Query: 528 TFT---AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL 584
             T    V   G   +  H        P SV         L++  +P+        ++  
Sbjct: 647 WVTITVEVSAVGERPAVAH--------PLSV---------LLLGSKPLMNTYYEAQMREW 689

Query: 585 GIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW----EKDTSVSTLFVNNLRKLGCGFQ 640
           G++   V      L ++   +   ++I+++ +++    E    V TL ++++R+     Q
Sbjct: 690 GMEPVTVDSLNSLLVRLEENNHAYDVIVLDADMFYHKPEHPLGVRTL-IHSVREHS---Q 745

Query: 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL-P 699
           S L +  +S   ++   S        ++ KP++ S++   L R         I+   + P
Sbjct: 746 SPLIIYGSSRQIAQLEISQQLGRQVHLLPKPIKHSLVLRYLSRF-------QIQPAPVEP 798

Query: 700 SMSLRHLLL----GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQ 754
            M      +     ++IL+ +D++VN KVA A LK+ G   + C   G++A + +   + 
Sbjct: 799 IMQTDGATILAVNKKRILLTEDHSVNQKVALAMLKKLGHTHIDCALNGEEALQAVQ-QNA 857

Query: 755 FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
           +D   MD QMP+MDG+EAT+ IR++       +                  PI+A+TA  
Sbjct: 858 YDLVLMDCQMPKMDGYEATRQIRQLPAPLYQAL------------------PIIALTAHT 899

Query: 815 IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           ++   E+C  +GM+ Y+SKP   ++L +++ ++ 
Sbjct: 900 MKGDDEKCYAAGMNDYLSKPVRLDELQKKLEKWL 933


>gi|334132574|ref|ZP_08506331.1| Putative sensor protein [Methyloversatilis universalis FAM5]
 gi|333442540|gb|EGK70510.1| Putative sensor protein [Methyloversatilis universalis FAM5]
          Length = 1390

 Score =  245 bits (626), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 177/625 (28%), Positives = 295/625 (47%), Gaps = 98/625 (15%)

Query: 233  VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 292
            V+ I    E    +   K+ AE A   KS FLA +SHEIRTPMN ++GM  ++M TEL  
Sbjct: 628  VDDITAEREAEAALKHAKELAEEATRMKSDFLANMSHEIRTPMNAIIGMSHLVMKTELTP 687

Query: 293  TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 352
             Q+D+++  Q S + L+ +IN++LD +K+E+GK+ +E + F L  +LD+V +L   KS  
Sbjct: 688  RQRDFMKKIQLSSQHLLGVINDILDFSKIEAGKMTVERIEFELEKVLDNVAALVIEKSAA 747

Query: 353  KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 412
            KG+EL   I   VP+ LIGDP R  QI+ N   N++KFTE+G I + + ++E+  D + +
Sbjct: 748  KGLELMFDIDPAVPDFLIGDPVRLGQILINYTNNAVKFTERGEIVLRLRMIEDSPDVVLL 807

Query: 413  ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 472
              E+  +                                                G G+ 
Sbjct: 808  RFEVRDT------------------------------------------------GIGLT 819

Query: 473  LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532
             E ++R+F  F Q   S +R +GGTG+GL+I + L   M GE+G  S+P  GSTF FTA 
Sbjct: 820  EEQRARLFESFQQADSSTTRKYGGTGLGLAICRKLAELMDGEVGVESVPGQGSTFWFTAR 879

Query: 533  FGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 592
             G  S    E     +   P+      +G + L+VD      +V    ++ +    E   
Sbjct: 880  LGRSSRQKRE-----LLPHPD-----LRGRRVLIVDDNDYAREVIGNLLRSMSFFTE--- 926

Query: 593  DQLQCLSQI------ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 646
            D++   S +      A+  +  +++ ++   W+            +R LG     +L ++
Sbjct: 927  DRINAWSAVEEVRRAATEGRPYDVVYLD---WQMPIMDGIEAARQIRALGLAHPPRLVMV 983

Query: 647  ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW---ELPSMSL 703
              +            V I  V++KP+ +S+L  +  R +  G++  +      +LP+   
Sbjct: 984  -TAFGREDLLLQAREVGIDDVLIKPVNASVLFDTTMRVLA-GDESRVAGTAASDLPAEM- 1040

Query: 704  RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 763
               L G ++L+V+DN +N +VA   L   G  +   E G  A   +   H +D   MD+Q
Sbjct: 1041 -AALAGARVLLVEDNELNREVARELLSESGLVIDIAEDGAVALSRVAGQH-YDLVLMDMQ 1098

Query: 764  MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 823
            MP MDG  AT+ +R+M                         +PI+AMTA+ ++   E CL
Sbjct: 1099 MPVMDGLTATRRMRDMPELAG--------------------LPIVAMTANAMREDVEACL 1138

Query: 824  RSGMDGYVSKPFEAEQLYREVSRFF 848
             +GM+ +++KP + + L+ ++ R+ 
Sbjct: 1139 DAGMNDHIAKPIDPQDLWAKLLRWI 1163


>gi|405363367|ref|ZP_11026321.1| two-component hybrid sensor and regulator [Chondromyces apiculatus
           DSM 436]
 gi|397089775|gb|EJJ20674.1| two-component hybrid sensor and regulator [Myxococcus sp.
           (contaminant ex DSM 436)]
          Length = 915

 Score =  245 bits (626), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 190/625 (30%), Positives = 307/625 (49%), Gaps = 112/625 (17%)

Query: 243 YHGMMELKKKAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 299
           YH + +L++  +AA   + AKS FLAT+SHEIRTPMN ++GM  +L+D  L   Q+D+V 
Sbjct: 224 YHDITDLERARKAAEAANQAKSLFLATMSHEIRTPMNAIIGMTGLLLDRALTEEQRDFVA 283

Query: 300 TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 359
           T + S +AL++L+N+VLD +K+E+G+ E E   F+LR  ++ VL L + ++ +KG++L  
Sbjct: 284 TIRQSSEALLTLLNDVLDFSKIEAGRFEAELRPFDLRQCVESVLDLLAVRASEKGLDLGC 343

Query: 360 YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSS 419
            I+ +VP+ L+GD  R RQ++ NL+GN++KFTE G   V+V                   
Sbjct: 344 DIAPQVPQMLVGDASRIRQVLLNLVGNALKFTEHGGAVVSV------------------E 385

Query: 420 KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 479
             ++SG   A+    W                        L  SV+DTG GIP + ++ +
Sbjct: 386 GASVSG---AEGAAEWA-----------------------LTFSVQDTGPGIPEDRRAGL 419

Query: 480 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS--IPNIGSTFTFTAVFGNGS 537
           F PF Q+  S+SR  GGTG+GL+ISK LV  M G +   S  I   G+TF+FT    +  
Sbjct: 420 FQPFNQLDASVSRRFGGTGLGLAISKRLVEAMGGTLWVESEGIAGRGTTFSFTLRAQSAP 479

Query: 538 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
                H  Q+   QP       QG + L+VD   +  ++    ++  G++    +   + 
Sbjct: 480 QAYAVHLRQE---QPL-----LQGRRVLIVDDNALFRRLLGRQLRAWGVEPVETASGPEA 531

Query: 598 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 657
           LSQ  +G+   +++L++  +   D    T     +R+ G G    L LL+   +  R  +
Sbjct: 532 LSQFQAGTG-YDVVLIDHHMPGMD---GTALAERIRREGQGL--PLLLLS---TPGRRGS 582

Query: 658 STDGVSIPSVIMKPLRSSMLAASL-------------QRAMGVGNKG---NIRNWELPSM 701
             +G+    V+ +PL++S L  +L              R +     G    +R  +  S+
Sbjct: 583 PPEGL-FAGVLSRPLKTSQLYDALISCFSQHVPPVPGTRELQASRAGPFPGVRPGD--SV 639

Query: 702 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761
            L        IL+V+DN  N K+A   L+R G        G++A    +   ++D   MD
Sbjct: 640 PL-------DILLVEDNATNQKLALLVLERLGYRADVALNGRQALH-AVSQKRYDVVLMD 691

Query: 762 IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 821
           +QMPEMDG EAT+ IR+                   E        ++AMTA+ + +  E+
Sbjct: 692 LQMPEMDGLEATRRIRQ-------------------ELPPRAQPWVIAMTANAMDSDREQ 732

Query: 822 CLRSGMDGYVSKPFEAEQLYREVSR 846
           C  +GMD ++ KP   + L   + R
Sbjct: 733 CFSAGMDDFLGKPIRVDALTSALLR 757



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 29/151 (19%)

Query: 706 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 765
           LL GR++LIVDDN +  ++    L+ +G   V    G +A         +D   +D  MP
Sbjct: 492 LLQGRRVLIVDDNALFRRLLGRQLRAWGVEPVETASGPEALSQFQAGTGYDVVLIDHHMP 551

Query: 766 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 825
            MDG                RIRR               +P+L ++    + +  E L +
Sbjct: 552 GMDG-----------TALAERIRR-----------EGQGLPLLLLSTPGRRGSPPEGLFA 589

Query: 826 GMDGYVSKPFEAEQLYREV----SRFFPPIP 852
           G+   +S+P +  QLY  +    S+  PP+P
Sbjct: 590 GV---LSRPLKTSQLYDALISCFSQHVPPVP 617


>gi|13473249|ref|NP_104816.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
 gi|14023997|dbj|BAB50602.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
          Length = 786

 Score =  245 bits (626), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 193/640 (30%), Positives = 291/640 (45%), Gaps = 136/640 (21%)

Query: 252 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
           KAEAAD AKS+FLA +SHEIRTPMNGVLGM ++L  TEL   Q+ +      SG AL+++
Sbjct: 231 KAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTELTPRQKTFTDVIVKSGNALLTI 290

Query: 312 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
           IN++LD +K+ +G+L L+   F L   ++DV +L S +  +K +EL V +  R+P  ++G
Sbjct: 291 INDILDFSKINAGQLTLDPAPFRLTEAVEDVATLVSARVAEKNLELIVRVDPRLPAHVVG 350

Query: 372 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
           D GRFRQI+TNL+GN++KFTEKGH+ + V                               
Sbjct: 351 DAGRFRQIVTNLVGNAVKFTEKGHVLIDV------------------------------- 379

Query: 432 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
                G +T N             D++ L + VEDTG GIP E    +F  F QV  S +
Sbjct: 380 -----GGETVN-------------DVVQLRLRVEDTGIGIPAEKLQNVFEKFAQVDGSST 421

Query: 492 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 551
           R H GTG+GL+I+  LV  M G+IG  S    GS F F        + + E         
Sbjct: 422 RRHEGTGLGLAIAARLVDLMAGKIGVESEIGRGSVFWFAVPLPVHHAEAREA-------- 473

Query: 552 PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS--QIASGSKIIN 609
              V  +  G + LV+D  P+                E++ +QL+  S    A+ S  + 
Sbjct: 474 --IVPVDVTGARVLVIDDNPVNR--------------EILLEQLRSWSFDCAAAESGAVG 517

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN---TSTDGVSIPS 666
           +  +++   +   SV  + ++       G      + A+S  S+      TS D V    
Sbjct: 518 LAFLDRAC-QLGASVDCIILDYQMPGMNGADVARAIAADSRLSAIPIVILTSVDQVDFGK 576

Query: 667 VIM---------KPLRSSMLAAS----LQRAMGVGNKGN--------------------- 692
           +I+         KP RS++L  +    +Q+A   G K                       
Sbjct: 577 MIIDFGISAHLTKPARSAVLLGTVISVIQKARSQGGKAQFIREPVQPKPVPQAAPPAFTV 636

Query: 693 IRNWELPSMSLRHLLLGRK----ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL 748
           IR   +P M++            ILI +DN VN  V    L   G +      G+ A E+
Sbjct: 637 IRGPAVPVMAVPESTAMPNGPIDILIAEDNEVNQLVFGQILNGLGLSYRIAGNGRTAVEM 696

Query: 749 LMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL 808
               H      MD+ MPEM+G+EAT+ IR                  A E  S  H+PI+
Sbjct: 697 YRSLHP-KLILMDVSMPEMNGYEATRAIR------------------AIETSSGGHIPII 737

Query: 809 AMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            +TA  ++   ++C+ +GMD Y+ KP   ++L  ++  + 
Sbjct: 738 GVTAHALKGDRDKCIEAGMDDYLPKPVSPDRLGTKIGTWL 777


>gi|182412655|ref|YP_001817721.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839869|gb|ACB74121.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 682

 Score =  245 bits (626), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 188/611 (30%), Positives = 289/611 (47%), Gaps = 105/611 (17%)

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           +L  +A  A+ AKS FLA +SHEIRTP+NGV+GM  +L  TELD  Q++ +RT + SG+A
Sbjct: 154 QLAMEAAVANQAKSAFLAMMSHEIRTPLNGVIGMTGVLEATELDDEQRECLRTIKMSGEA 213

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L++++N+ LD +K+E+G+LELE V F+LR   ++   L +GK+  K +EL   +++  P 
Sbjct: 214 LLAVVNDTLDYSKIEAGRLELEQVDFDLRGCAEEAAELLAGKAFAKKLELVCDVAEDAPR 273

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 427
            +IGDP R RQI  NL+GN++KFT  G I + + ++E                       
Sbjct: 274 RIIGDPVRLRQIFVNLLGNAVKFTPAGEIVLQIRVLE----------------------- 310

Query: 428 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487
                     F     DG     +          + V DTG GI  + Q R+F  F QV 
Sbjct: 311 ----------F-----DGEAYALQ----------LGVRDTGIGIAADKQHRLFQSFSQVD 345

Query: 488 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 547
            S +R +GGTG+GL+ISK L   M G +   S    GS F FT         +     Q 
Sbjct: 346 SSTTRQYGGTGLGLAISKRLAELMGGTMWVESEVGRGSAFLFTIRARRADPITRPPPPQP 405

Query: 548 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 607
           +           +G + LVVD       V   H++  G +   V+      +++A+G + 
Sbjct: 406 L-----------KGRRVLVVDDNATSRDVLARHLRYFGAEPICVASTTDGDARLANGERF 454

Query: 608 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
             + LV+Q++ E         V   R   C       LL +++       + DG     +
Sbjct: 455 A-LALVDQQMPEGAGDAWARAVAT-RGKPCP-----ILLLHAVGERTNEPAIDG-----I 502

Query: 668 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-------MSLRHLLLGRKILIVDDNNV 720
           + KP+R   L     + +G      I+   +P+       M++R  L   +IL+ +DN V
Sbjct: 503 VHKPIRRESLGERASQVLG----ARIKPLAVPAPVDDTRGMAVRMPL---RILMAEDNVV 555

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           N  VA   L R G AV  V  G +A  LL     FD   MD+QMPE+DGFEAT+ IR   
Sbjct: 556 NQTVARHQLARLGYAVEMVPNGLEAV-LLATERDFDVILMDVQMPELDGFEATRRIR--- 611

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                       ++   +++      I+A+TA V  A       +GM+ Y++KP   E L
Sbjct: 612 ------------AVRPLDSLPW----IIALTAGVGTADRSVARTAGMNEYLAKPLRHETL 655

Query: 841 YREVSRFFPPI 851
            + ++R +  +
Sbjct: 656 QQALARAYAEV 666


>gi|395229904|ref|ZP_10408214.1| signal transduction histidine-protein kinase BarA [Citrobacter sp.
           A1]
 gi|424730119|ref|ZP_18158717.1| hybrid sensory histidine kinase [Citrobacter sp. L17]
 gi|394716579|gb|EJF22317.1| signal transduction histidine-protein kinase BarA [Citrobacter sp.
           A1]
 gi|422895331|gb|EKU35120.1| hybrid sensory histidine kinase [Citrobacter sp. L17]
          Length = 918

 Score =  245 bits (626), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 179/605 (29%), Positives = 288/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTEGGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN     S +    G +   V+P    A+ +   +    ++V + S     L +    
Sbjct: 522 --PNVLIDRSTTLCLAGKRLAYVEPNATAAQCTLDILSETPLEV-IYSPSFSGLPKDHYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             ++ + +  +E          L + + R       +   LLA    +            
Sbjct: 579 ILLLGIPVTLRE---------PLTMQHERLANAAAMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +  +        + L    +   ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHSAD-------PLLLDDSKIAMTVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     VV  + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 683 IGALLEDKVQHVVLCDSGHQAVD-RARQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 738

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E ++L+  +
Sbjct: 739 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEDKLHNLL 781

Query: 845 SRFFP 849
            R+ P
Sbjct: 782 LRYKP 786


>gi|392553060|ref|ZP_10300197.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
            spongiae UST010723-006]
          Length = 1422

 Score =  245 bits (625), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 186/624 (29%), Positives = 296/624 (47%), Gaps = 105/624 (16%)

Query: 245  GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
             + + K  AEAA VAK +FLA++SHEIRTPMNGV+GML+++ D+ L+  Q   +  A+ S
Sbjct: 880  ALTKAKVNAEAAMVAKDEFLASMSHEIRTPMNGVIGMLELMQDSPLNDEQTHRLTIAKNS 939

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
              +L++LIN++LD +K+E+ KLELE + F+L  +L +++ LF+ +++ K +EL +   + 
Sbjct: 940  ANSLLNLINDILDFSKIEADKLELEQIQFDLHLLLSELVELFATRAEQKQLELILDTVNL 999

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
                +IGDPGR RQI++NL+GN+IKFT +G I V+  L +                    
Sbjct: 1000 NEHFVIGDPGRIRQILSNLIGNAIKFTHQGEIIVSAALCD-------------------- 1039

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                 D  H W+                       L ++V+DTG GI  E    +F  F 
Sbjct: 1040 -----DSEHYWR-----------------------LTLAVKDTGIGISKEKHQHVFELFS 1071

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF--GNGSSTSNE 542
            Q   S +R +GGTG+GL+I K L   M G+I   S  N GS F         N SS S  
Sbjct: 1072 QEDSSTTRNYGGTGLGLAIVKRLCNHMDGDISLTSATNEGSEFVCNLRIKKANQSSLS-- 1129

Query: 543  HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQ-- 600
                    QPN   S   G+  LVVD      ++    ++  G +V   S+  + L++  
Sbjct: 1130 --------QPNVAIS---GLNILVVDDNETNCEILAKQLKNWGAKVTTFSNGQEALARCN 1178

Query: 601  -IASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTST 659
             + +   + ++ +++ ++         +    L+        KL ++ +      A    
Sbjct: 1179 ALKASETLFDVAILDMQM---PKMSGEMLAKELKADNQLAAIKLIMMTSMQHKGDAKRFA 1235

Query: 660  DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKI----- 712
            + +       KP  S+ L A+LQ  + V N   +++ E P ++  ++  L   K+     
Sbjct: 1236 E-IGFDGYFPKPATSADLRAALQ--IIVDNGEPLKHAE-PLLTRHYINELNNTKVKPTSK 1291

Query: 713  -------LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ-FDACFMDIQM 764
                   L+V+DN VN  VA   L +        E G  A   L      +D  FMDIQM
Sbjct: 1292 ELPQLNALLVEDNKVNQMVAKGILSKLKLTCDIAENGLDAVNKLKAQSTPYDVIFMDIQM 1351

Query: 765  PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 824
            PEMDG++AT  IR+ +         GE          + H  I+AMTA+ ++   E+CL 
Sbjct: 1352 PEMDGYQATNAIRQNQ--------CGE---------QHQHTTIIAMTANAMEGDKEKCLA 1394

Query: 825  SGMDGYVSKPFEAEQLYREVSRFF 848
            +GM+ Y+SKP   + +   +   F
Sbjct: 1395 AGMNEYISKPISIDDVKDTLHLLF 1418


>gi|119469670|ref|ZP_01612539.1| putative sensor protein [Alteromonadales bacterium TW-7]
 gi|119446917|gb|EAW28188.1| putative sensor protein [Alteromonadales bacterium TW-7]
          Length = 1118

 Score =  245 bits (625), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 189/641 (29%), Positives = 307/641 (47%), Gaps = 104/641 (16%)

Query: 218  ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 277
            ++ +A+L+G +  ++  RI   +E    ++E K+ AE A  AKS+FLAT+SHEIRTPMNG
Sbjct: 570  LITVATLIGSL-HSSQQRIEAEQE----LVEAKELAEQAVAAKSEFLATMSHEIRTPMNG 624

Query: 278  VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337
            VLGML+++  T+LD  Q  ++  AQ+S ++L+++IN++LD +K+E+GKL ++++ FNL  
Sbjct: 625  VLGMLNIIKQTKLDQQQAHHIELAQSSAESLLNIINDILDFSKMEAGKLNIDSIQFNLPK 684

Query: 338  ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 397
            +L +V+  F+ K +    +L +  +      +I DP R RQI+ NL+GN++KFT+ G + 
Sbjct: 685  LLGEVVESFALKVEQNNTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTKNGDVI 744

Query: 398  VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 457
            +    +  V DS                                  DG+           
Sbjct: 745  I----IARVDDST---------------------------------DGAF---------- 757

Query: 458  INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 517
              L  SV DTG GI    Q+ +F  F Q   S +R  GGTG+GL+I K L   M G +  
Sbjct: 758  --LECSVIDTGIGINKNQQTSLFNSFTQADTSTTRQFGGTGLGLTIVKQLCELMDGSVNV 815

Query: 518  VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 577
             S+   GSTF+F+       S   +  S  +NN+           + L++D   +   ++
Sbjct: 816  NSVEGEGSTFSFSVKIQPRLSKEQDLPSHLINNK-----------RILIIDECHLNTSIA 864

Query: 578  RYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637
               ++  G  VE ++D  + L  +   ++  + ILV+   +       T  + N  K   
Sbjct: 865  TKQLKIWGAHVEFINDYNEVLIHLEEMARSYDAILVDYHFFSVAAKTQTTALQNFIK--- 921

Query: 638  GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 697
             F+ K  ++A    S +   S   +++  +I KPL  S L  SL     +         +
Sbjct: 922  KFKCKSVIMAPMSYSQK--ESMLKMNVDCMIFKPLTPSDLFDSLTNEKFLEQ-------Q 972

Query: 698  LPSMSLRHLLLGRKI--------LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 749
            L    L + L    I        L+V+DN +N  VA+A LK  G      E G++A   L
Sbjct: 973  LNQAQLTNTLTKAPIKDSSEPVLLLVEDNKINQVVASALLKEAGVIFDIAENGEEAISKL 1032

Query: 750  MPPHQ--FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPI 807
                   +    MD QMP MDG++AT+ IR+           G    E Y  VS     I
Sbjct: 1033 NAKQNNPYKLILMDCQMPIMDGYQATQAIRQ-----------GGAG-EKYNAVS-----I 1075

Query: 808  LAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
            +A+TA+ +Q   E+C+ +GMD Y++KP +   L  ++  + 
Sbjct: 1076 IALTANAMQGDREKCIAAGMDDYLTKPLDMAALKPKLQHWL 1116


>gi|334705873|ref|ZP_08521739.1| hybrid sensory histidine kinase BarA [Aeromonas caviae Ae398]
          Length = 906

 Score =  245 bits (625), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 191/606 (31%), Positives = 285/606 (47%), Gaps = 113/606 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    L+ T L  +Q DY++T + S + L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKTSLTPSQTDYMQTIEKSARNLL 340

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +IN++LD +K+E+GKL+LE + F+LR  L++ + L    + DK +EL++ +   VP+ L
Sbjct: 341 GIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQVDAAVPDYL 400

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R +Q++TNL GN+IKFTE+G++ V V                             
Sbjct: 401 TGDPMRLQQVLTNLTGNAIKFTERGNVDVRV----------------------------- 431

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                        Q G       SS + + L V + DTG GI  E Q ++F  F Q   S
Sbjct: 432 ------------EQTG------ESSGNKVRLRVLIRDTGIGISEEQQRQLFQAFNQADSS 473

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR +GGTG+GL I++ LV +M G+I F S    GS F+F             H    ++
Sbjct: 474 ISRRYGGTGLGLVITQKLVQQMGGQIRFKSELGKGSVFSF-------------HLDLDVS 520

Query: 550 NQPNSVS---SEFQGMKALVVDPRP-----IRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 601
             P S        QG +  +++P P     + A +  +H   L +    V ++   +S  
Sbjct: 521 PLPQSERLPLDRIQGKRVWLLEPDPFTHASLLALLGEWH---LDVHSLTVDEEWPPMSS- 576

Query: 602 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
                  +M+L+          V    +  L  L  G Q+ + LL++   +        G
Sbjct: 577 ------QDMVLIGSSTLHSPQQV----IARLDGLD-GQQNTIVLLSSHEPALYDAMLAHG 625

Query: 662 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 721
                 + KP+    L  +L     V      R   LP+ + R  +   K+L VDDN  N
Sbjct: 626 AV--HCLSKPINHRKLLHALLSPEAV------RRAPLPAPTPRS-VQAVKVLAVDDNAAN 676

Query: 722 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
           LK+ AA LK     VV  + GK+A  L      FD  FMDIQMP MDG  AT+ IR   H
Sbjct: 677 LKLIAAMLKEMVTEVVVCKNGKEAVNLAQ-SQPFDIIFMDIQMPVMDGISATQAIR--HH 733

Query: 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
           + N                     PI+A+TA  I    E  +R GMD Y++KP +   L 
Sbjct: 734 SLNTE------------------TPIVAVTAHAIPGERERLIRQGMDDYLAKPIDEGMLA 775

Query: 842 REVSRF 847
           + ++ F
Sbjct: 776 QLITDF 781


>gi|428148608|ref|ZP_18996471.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
           pneumoniae subsp. pneumoniae ST512-K30BO]
 gi|427541449|emb|CCM92609.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
           pneumoniae subsp. pneumoniae ST512-K30BO]
          Length = 916

 Score =  245 bits (625), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 185/609 (30%), Positives = 294/609 (48%), Gaps = 115/609 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QI+TNL+GN+IKFTE G+I V V   +  + +  V+ E+    +T  G P  
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++          G +   V+     A+ +   +    ++V + S     L++    
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 663
               +++LV   V  +D S        L K  C     + L L  +   S      DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCNAQVSAEALKRDGVA 629

Query: 664 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
             + ++KPL ++ L  +L     A+       I + +LP            ++ VDDN  
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           NLK+  A L      V+  + G++A +      Q D   MDIQMP+MDG  A ++I  + 
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQMDLILMDIQMPDMDGIRACELIHHLS 736

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
           H                    +   P++A+TA  ++   E+ L +GM+ Y++KP E E+L
Sbjct: 737 H--------------------HQQTPVIAVTAHALEGQREKLLSAGMNDYLAKPIEEEKL 776

Query: 841 YREVSRFFP 849
           +  + R+ P
Sbjct: 777 HALLLRYQP 785


>gi|350552273|ref|ZP_08921477.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
            700588]
 gi|349794650|gb|EGZ48461.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
            700588]
          Length = 1258

 Score =  245 bits (625), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 177/616 (28%), Positives = 295/616 (47%), Gaps = 92/616 (14%)

Query: 248  ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
            ++  +AEAA+  K++FLA +SHE+RTPMNGV+GM  +L++TEL   Q++Y    + SG+ 
Sbjct: 719  QMAFQAEAANATKTEFLANISHELRTPMNGVIGMNGLLLETELTEEQREYAAIVRNSGEL 778

Query: 308  LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
            ++S+IN++LD +K+E+GKL+LE ++F+L  +L D++ + + ++ DKG+EL   +   +P 
Sbjct: 779  MMSMINDILDVSKIEAGKLDLEILAFDLEGMLGDLVDIMALRAYDKGLELFYTLEPGLPR 838

Query: 368  TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 427
             + GDPGR RQI++NL+ N+IKFT KG I + V  V++                      
Sbjct: 839  HMRGDPGRLRQILSNLICNAIKFTPKGEIAIRVACVQQ---------------------- 876

Query: 428  VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487
                                       +D+  L  +V DTG GIP +   ++F  F QV 
Sbjct: 877  --------------------------QSDMAVLRFAVRDTGIGIPPDKLGQLFEKFTQVD 910

Query: 488  PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 547
             S +R +GG G+GL+I+K L   M GEIG VS    GS F FT           E   + 
Sbjct: 911  SSTTRRYGGMGLGLAIAKQLTEMMHGEIGVVSEAGQGSEFWFTVRL--------EKQPED 962

Query: 548  MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ---LQCLSQIASG 604
            +   P    +E +G + LV+D       +    +Q  G+++  V DQ    + L + A+ 
Sbjct: 963  LQKSPRE-RAELKGARVLVLDASQGHGDMLGQQLQSWGMRITHVIDQQGAFERLREAAAD 1021

Query: 605  SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
                 M++  Q   ++  ++S+      R      Q+   +L   +         + +  
Sbjct: 1022 DPFHIMLVNTQMSRDEGEAISSALRQEPR-----LQATRLILLTPLGIRGDARYYETLGF 1076

Query: 665  PSVIMKPLRSSMLAASLQRAMGVGNKGNIRN-WELPSMSLRHLL---------LGRKILI 714
             + + KP++   L  +L   +      +  +      +  RH +            +IL+
Sbjct: 1077 AAYLTKPVKPHELQGALSLVLAKPTTADASSTLNAAQIITRHTVREAIKRFADCKARILL 1136

Query: 715  VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATK 774
            V+DN +N ++    LK+ G     V  G +A   L   H +D   MD++MP MDG EAT+
Sbjct: 1137 VEDNLINQRMMMQMLKKLGLRADAVAHGAEALNALEMTH-YDLVIMDVKMPIMDGLEATR 1195

Query: 775  IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
             IR   H    R              S+  +PI+A+TA  +    E+CL++GM+ Y++KP
Sbjct: 1196 QIR--AHATPMR--------------SSQDIPIIAITAHAMHLDREKCLQAGMNDYLAKP 1239

Query: 835  FEAEQLYREVSRFFPP 850
                 L   + R+  P
Sbjct: 1240 ITLHSLIEVLDRYLSP 1255


>gi|386036266|ref|YP_005956179.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae KCTC
           2242]
 gi|339763394|gb|AEJ99614.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae KCTC
           2242]
          Length = 830

 Score =  245 bits (625), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 185/609 (30%), Positives = 293/609 (48%), Gaps = 115/609 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QI+TNL+GN+IKFTE G+I V V   +  + +  V+ E+    +T  G P  
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++          G +   V+     A+ +   +    ++V + S     L++    
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 663
               +++LV   V  +D S        L K  C     + L L      S      DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629

Query: 664 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
             + ++KPL ++ L  +L     A+       I + +LP            ++ VDDN  
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           NLK+  A L      V+  + G++A +      Q D   MDIQMP+MDG  A ++I  + 
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQMDLILMDIQMPDMDGIRACELIHHLS 736

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
           H                    +   P++A+TA  ++   E+ L +GM+ Y++KP E E+L
Sbjct: 737 H--------------------HQQTPVIAVTAHALEGQREKLLSAGMNDYLAKPIEEEKL 776

Query: 841 YREVSRFFP 849
           +  + R+ P
Sbjct: 777 HALLLRYQP 785


>gi|294141952|ref|YP_003557930.1| sensor histidine kinase/response regulator [Shewanella violacea
           DSS12]
 gi|293328421|dbj|BAJ03152.1| sensor histidine kinase/response regulator [Shewanella violacea
           DSS12]
          Length = 931

 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 188/602 (31%), Positives = 278/602 (46%), Gaps = 97/602 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A  A   KS+FLA +SHE+RTP+NGV+G    L+ T L  +QQDYV T + S   L+
Sbjct: 286 KKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHSSQQDYVNTIEKSATNLL 345

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +IN++LD +K+E+GK+ LE + F LR  LDD ++L S  +++K +EL V I   +PE L
Sbjct: 346 GIINDILDFSKLEAGKMVLENMPFALRETLDDTITLLSNSAREKDIELVVDIDQSIPEDL 405

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GD  RF QIITNL+GN+IKFT+ G + + + L E   D +                   
Sbjct: 406 SGDAMRFSQIITNLVGNAIKFTDIGSVHLRLQLTESTNDKV------------------- 446

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                        NL   V DTG GI    Q  +F  F Q   S
Sbjct: 447 -----------------------------NLRCEVIDTGIGIDESQQELLFQAFGQADSS 477

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR  GGTG+GL I+K L+ RM G+IG  S PN GS+F FT              S    
Sbjct: 478 ISRRFGGTGLGLIITKRLINRMGGQIGCHSKPNTGSSFWFTLPLS---------TSIYPI 528

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
            Q  SV  +      L+++PR +        ++  G+++  +          +      +
Sbjct: 529 GQIQSV-DKLLNKTILLLEPRELSNNTLDRQVRHWGMRLTNIRSSELLAHHFSQHDTHYD 587

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL---LANSISSSRANTSTDGVSIPS 666
             L+  +  +KDT++ +     L+K+       +F+   L + + S           +  
Sbjct: 588 YALISNKGLDKDTNIGS----QLKKIKARCNYLIFIGGDLEHDLHSILP-------FVDK 636

Query: 667 VIMKPLRSSMLAASLQRAM-GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 725
           V+  P+   +LA +L        ++  ++ +  P    R  +    +L VDDN  NLK+ 
Sbjct: 637 VMSAPIGEKVLAQTLIDPQPNSESQQLLKEYTPPEPISREAM---SVLAVDDNPANLKLI 693

Query: 726 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785
              LK   + V  V+ G+ A +       FD  FMDIQMP  DG  ATK IR  +H+ N 
Sbjct: 694 DTLLKEVVSQVTVVDSGQGAIK-QAQERSFDLIFMDIQMPGTDGISATKQIR--QHSLNR 750

Query: 786 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 845
                             + PI+A+TA  I    E   +SGMDGY+ KP +   L   +S
Sbjct: 751 ------------------NTPIIAVTAHTIAEERERIEQSGMDGYLPKPIDEASLRSVIS 792

Query: 846 RF 847
           R+
Sbjct: 793 RW 794


>gi|237729749|ref|ZP_04560230.1| sensory histidine kinase [Citrobacter sp. 30_2]
 gi|226908355|gb|EEH94273.1| sensory histidine kinase [Citrobacter sp. 30_2]
          Length = 918

 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 182/607 (29%), Positives = 291/607 (47%), Gaps = 110/607 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTEGGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN     S +    G +   V+P    A+ +      L I  E   + +   S     
Sbjct: 522 --PNVIVDRSTTLCLAGKRLAYVEPNATAAQCT------LDILSETPLEVIYSPSFSGLP 573

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
           ++  +++L+   V  ++     L + + R       +   LLA    +            
Sbjct: 574 AEHYDILLLGIPVTLRE----PLTMQHERLASAAAMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +  +        + L    +   ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHSAD-------PLLLDESKIAMTVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
             A L+     VV  + G +A +    MP   FD   MDIQMP+MDG  A ++I ++ H 
Sbjct: 683 IGALLEDKVQHVVLCDSGHQAVDRARQMP---FDLILMDIQMPDMDGIRACELIHQLPH- 738

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                                  P++A+TA  +    E+ L +GM+ Y++KP E ++L+ 
Sbjct: 739 -------------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEDKLHN 779

Query: 843 EVSRFFP 849
            + R+ P
Sbjct: 780 LLLRYKP 786


>gi|330012191|ref|ZP_08307324.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
           MS 92-3]
 gi|328533893|gb|EGF60561.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
           MS 92-3]
          Length = 916

 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 185/609 (30%), Positives = 293/609 (48%), Gaps = 115/609 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QI+TNL+GN+IKFTE G+I V V   +  + +  V+ E+    +T  G P  
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++          G +   V+     A+ +   +    ++V + S     L++    
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 663
               +++LV   V  +D S        L K  C     + L L      S      DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629

Query: 664 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
             + ++KPL ++ L  +L     A+       I + +LP            ++ VDDN  
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           NLK+  A L      V+  + G++A +      Q D   MDIQMP+MDG  A ++I  + 
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQMDLILMDIQMPDMDGIRACELIHHLS 736

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
           H+                       P++A+TA  ++   E+ L +GM+ Y++KP E E+L
Sbjct: 737 HHQQT--------------------PVIAVTAHALEGQREKLLSAGMNDYLAKPIEEEKL 776

Query: 841 YREVSRFFP 849
           +  + R+ P
Sbjct: 777 HALLLRYQP 785


>gi|395762634|ref|ZP_10443303.1| multi-sensor hybrid histidine kinase [Janthinobacterium lividum PAMC
            25724]
          Length = 1184

 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 190/648 (29%), Positives = 296/648 (45%), Gaps = 105/648 (16%)

Query: 221  IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
            +  LVG I   +  + A+       ++  K+ AE+A  +KS+FLA +SHEIRTPMNG+LG
Sbjct: 498  LQGLVGTIVDISSQKAAE-----RALLLAKEVAESASRSKSEFLANMSHEIRTPMNGILG 552

Query: 281  MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
            M D+++D+ELD+ Q+ Y+   +AS  AL+ +IN++LD +K+E+G L LE++ FNLR ++ 
Sbjct: 553  MTDLVLDSELDIHQRKYLEIVKASADALLGIINDILDFSKIEAGMLTLESIPFNLRQLMQ 612

Query: 341  DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
            + +   + ++Q  G+EL + +   +P+TL+GDPGR RQ++TNL GN+IKFT +G + V+ 
Sbjct: 613  ESMRALAVRAQVSGLELVLDVDPALPQTLLGDPGRLRQVLTNLAGNAIKFTPRGEVTVSA 672

Query: 401  YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 460
             L     D  + + +L                                            
Sbjct: 673  RL--GACDDGKAQVQL-------------------------------------------- 686

Query: 461  IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520
               V DTG GI  + Q  +F  F Q   S +R  GGTG+GLSI++ LV  M G IG  S 
Sbjct: 687  --CVRDTGIGIAADMQEAVFDAFQQEDGSTTRRFGGTGLGLSITRRLVSMMGGSIGLSSE 744

Query: 521  PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 580
               GS+FT       G         Q     P+   +   G   L++D       + R  
Sbjct: 745  LGKGSSFTVDLALNIG-------EDQPCLTPPD---ASLTGRTLLLIDDNSSSLSILRQI 794

Query: 581  IQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL----FVNNLRKLG 636
             +  G  V   +     L    S   +  +I+        D ++  +      + L  L 
Sbjct: 795  FEGSGAAVTACTSGEAALEHCRSALPVDCIIM--------DFAMPGMNGFGTASALAALP 846

Query: 637  CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW 696
               +  + +L++S + + A    + + I   ++KP     L A     +G          
Sbjct: 847  HWSEVPIVMLSSSGNLADAARCRE-LGIEGYLLKPASPEELLAITMSVLGTCRGAPSATP 905

Query: 697  ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 756
             +    +R       IL+V+DN +N ++A   L   G  V     G++A +     H FD
Sbjct: 906  AVTQHGVREGTPSLDILLVEDNAMNRELATVLLSHAGHRVTHAANGQQALDCQASGH-FD 964

Query: 757  ACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 816
               MD+QMPEM GFEAT  IR+ E     R      S+            I+AMTA   +
Sbjct: 965  MILMDLQMPEMGGFEATAQIRQREAQGMAR------SV------------IIAMTASAFE 1006

Query: 817  ATYEECLRSGMDGYVSKPFEA-------EQLYREVSRFFPPI-PDRSP 856
               E C+  GMD Y+SKPF         EQ   ++S+  PP+ P  +P
Sbjct: 1007 GDRERCIAGGMDDYLSKPFRTAAFQSLIEQHVLQISK--PPLAPAMTP 1052


>gi|418407316|ref|ZP_12980634.1| two component sensor kinase/response regulator hybrid [Agrobacterium
            tumefaciens 5A]
 gi|358006460|gb|EHJ98784.1| two component sensor kinase/response regulator hybrid [Agrobacterium
            tumefaciens 5A]
          Length = 1232

 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 190/654 (29%), Positives = 308/654 (47%), Gaps = 110/654 (16%)

Query: 226  GHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 285
            G+ +   V  + +++     +  L  +AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L
Sbjct: 646  GNYWLIIVTDVTEMKMREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELL 705

Query: 286  MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 345
              + LD  Q+ +      SG AL+++IN++LD +K+E+G+++L +V F+    ++DV+SL
Sbjct: 706  AKSNLDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSL 765

Query: 346  FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 405
             S  + +K +EL V I   V   ++GD GRFRQ++TNL+GN++KFTE GH+ +       
Sbjct: 766  LSSAALEKNIELVVRIDPSVFGKVMGDAGRFRQVVTNLVGNAVKFTEMGHVLI------- 818

Query: 406  VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 465
                     ELS+                                +S+ A    L + VE
Sbjct: 819  ---------ELSA--------------------------------QSAEASETILSLRVE 837

Query: 466  DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 525
            D+G GIP +    IF  F QV  S +R H GTG+GL+I+  LVG   G I  VS    GS
Sbjct: 838  DSGIGIPADKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGTINVVSEVGKGS 897

Query: 526  TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
            TF     F         H +++  + P  ++   + ++ LV+D   +  ++    ++  G
Sbjct: 898  TFEVNIPF---------HVTEKRRDAP-LLAMAIEDIRVLVIDDNDVNRRILTEQLKTWG 947

Query: 586  IQVEVVSD---QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642
            I    V D    +  L + AS    I+ I+++  +      ++ L V    +    F   
Sbjct: 948  IDGHAVQDGPSGIAVLQEAASLGFTIDAIILDYHM----PVMNGLDVVERIRADSRFDDI 1003

Query: 643  LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL-------------QRAMGVGN 689
              +   S+      +    +S+ + +MKP R+ +L ++L             Q   G+G+
Sbjct: 1004 AIVFLTSMDVVGDESLFTDLSVQAHLMKPARARLLRSTLFDVVRDVRQKRARQDPQGLGS 1063

Query: 690  KGN---IRNWELPSMSLRH------LLLGRK------ILIVDDNNVNLKVAAAGLKRYGA 734
             G+   +R    P+   R       ++  R+      +L+ +DN+VN  V    L++ G 
Sbjct: 1064 GGSDAPVRPDNGPTDKKRRVVSPPTMVPDRRRPCLVDVLVAEDNDVNQIVFTQILQQAGL 1123

Query: 735  AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSI 794
              + V  GKKA +     H      MD+ MP M+G +AT  IR  E              
Sbjct: 1124 RFLIVGNGKKAVQ-AWEEHNPAVILMDVSMPVMNGHQATMAIRSAEQ------------- 1169

Query: 795  EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
                     HVPI+ +TA    A  E C+ +GMD Y+SKP   E L  +++++ 
Sbjct: 1170 ---AAADGRHVPIIGVTAHTQDADRELCIAAGMDDYLSKPISPEILEDKIAQWL 1220


>gi|449047540|ref|ZP_21730833.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae hvKP1]
 gi|448877405|gb|EMB12371.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae hvKP1]
          Length = 916

 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 185/609 (30%), Positives = 293/609 (48%), Gaps = 115/609 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QI+TNL+GN+IKFTE G+I V V   +  + +  V+ E+    +T  G P  
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++          G +   V+     A+ +   +    ++V + S     L++    
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 663
               +++LV   V  +D S        L K  C     + L L      S      DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629

Query: 664 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
             + ++KPL ++ L  +L     A+       I + +LP            ++ VDDN  
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           NLK+  A L      V+  + G++A +      Q D   MDIQMP+MDG  A ++I  + 
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQMDLILMDIQMPDMDGIRACELIHHLS 736

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
           H+                       P++A+TA  ++   E+ L +GM+ Y++KP E E+L
Sbjct: 737 HHQQT--------------------PVIAVTAHALEGQREKLLSAGMNDYLAKPIEEEKL 776

Query: 841 YREVSRFFP 849
           +  + R+ P
Sbjct: 777 HALLLRYQP 785


>gi|332526001|ref|ZP_08402141.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332109846|gb|EGJ10474.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 972

 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 192/641 (29%), Positives = 300/641 (46%), Gaps = 103/641 (16%)

Query: 216 IGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKK-KAEAADVAKSQFLATVSHEIRTP 274
           +G L + + VG + QA   R+A+     +G +E +  +AEAA  AKS FLA +SHEIRTP
Sbjct: 426 VGFLAVLTDVGALKQAE-QRLAEA----NGQLEQRAVQAEAATRAKSAFLANMSHEIRTP 480

Query: 275 MNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFN 334
           MN ++G+  ++     D  Q++ +R    +   L+ ++N++LD +K+E+GKL L+ V F+
Sbjct: 481 MNAIIGLTHLISRATQDPLQRERLRKVDGAAAHLLQILNDILDLSKIEAGKLRLDPVDFS 540

Query: 335 LRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG 394
              ++   L +    ++ KG+EL V  +D +P  L GD     Q + NL+GN++KFTE G
Sbjct: 541 RDELIARALDVVEASARAKGLEL-VLDTDHLPARLRGDARLLSQALINLLGNAVKFTEHG 599

Query: 395 HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 454
            + +   L+ E    ++V  E                                       
Sbjct: 600 WVRLRAALLREHGQRLQVRFE--------------------------------------- 620

Query: 455 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGE 514
                    V+DTG GI  E Q+R+FT F Q   S +R HGGTG+GL++++++   M G 
Sbjct: 621 ---------VQDTGIGIAPEQQARLFTAFEQADSSSTRRHGGTGLGLALTRHIAELMGGS 671

Query: 515 IGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRA 574
              VS P  GSTF  T       S   E  S      P S       ++ALVVD  P   
Sbjct: 672 ADAVSRPGAGSTFGLTVWLERAESVPPESGS-----LPPS-------LRALVVDDLPEAR 719

Query: 575 KVSRYHIQRLGIQVEVVSDQLQCLSQI-ASGSKIINMILVEQEVWEKDTSVSTLFVNNLR 633
           +     ++ LG+Q +      Q L+++ A+G +  ++ +V+  +      V   F   LR
Sbjct: 720 EAIASQLELLGVQADTADGAEQALARLAAAGQRRYDLFIVDCVM-----PVCDGF-ETLR 773

Query: 634 KL----GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG- 688
           +L    G    + + + A+   + R      G    +V+MKPL  S L  ++ + +    
Sbjct: 774 RLRAAPGGAGPAAVLVSAHDAPALRERARDAGYG--AVLMKPLTPSALHDTIAQLLRSSP 831

Query: 689 -NKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATE 747
             +      E   + L     GR++L+ +DN VN +VA A L+  G  VV  + G +A E
Sbjct: 832 RTEAAADASEPAFVRLCARAAGRRVLLAEDNPVNQEVAVALLESAGLEVVVADDGARAVE 891

Query: 748 LLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPI 807
           L      FD   MD+QMP MDG  AT+ IRE         R G              +PI
Sbjct: 892 LACGSPPFDLVLMDVQMPGMDGLTATRTIRE---------RAGRT------------LPI 930

Query: 808 LAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           +AMTA+      E CL +GMD +V+KP +   LY  + R+ 
Sbjct: 931 VAMTANAFGEDREACLAAGMDDHVAKPVDPAMLYTTLLRWL 971


>gi|164504822|gb|ABY59649.1| BarA [Yersinia ruckeri]
          Length = 865

 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 185/612 (30%), Positives = 290/612 (47%), Gaps = 121/612 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T L  TQ DY++T Q S   L+
Sbjct: 277 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLTPTQTDYLQTIQRSANNLL 336

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+ KL LE + F LR  LD+V+ L +  + +KG+EL + +++ VPE +
Sbjct: 337 SIINDVLDFSKLEAEKLVLEHIPFPLRETLDEVVILLAHTAHEKGLELTMQVNNDVPEQV 396

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GD  R +Q++TNL+GN+IKFTE G++ + V L                           
Sbjct: 397 VGDSMRLQQVMTNLLGNAIKFTENGNVDIHVSL--------------------------- 429

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
            R H+ +  K                    L V ++DTG GI  + QS++F  F Q   S
Sbjct: 430 -RSHTRRQIK--------------------LAVEIQDTGIGISEQQQSQLFQAFRQADAS 468

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF--TAVFGNG--------SST 539
           ISR HGGTG+GL I++ LV  M G+I F S  N GSTF F  T     G         S 
Sbjct: 469 ISRRHGGTGLGLVITERLVKEMDGDISFHSELNRGSTFRFHITLDLHEGMVYRQPTMESL 528

Query: 540 SNEHNSQ-QMNNQPNSVSSEFQGMKALVVDPRPIRAKVS--RYHIQRLGIQVEVVSDQLQ 596
           + +H +  + N      + +   +  L V   P  A+++   Y I  LG+ +   ++   
Sbjct: 529 AGKHLAYVERNPAAAQATLDMLSITPLRVTHSPTLAQLADKHYDILLLGVPIPFRTN--- 585

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                    K+I  + +  +V     S S +    L++LG         LA  +S++R  
Sbjct: 586 ---MAGHQDKLIAALKMADQVILALPSQSQIDAEQLKQLGAK-----ACLAKPVSANR-- 635

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
                       + PL       +L   +    KG+     LP           +++ VD
Sbjct: 636 ------------LMPLLLKETPLALPAPVEPVTKGS----RLP----------LRVMAVD 669

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
           DN  NLK+    L+     ++  E G+ A  +    H  D   MDIQMPE+DG  A+++I
Sbjct: 670 DNPANLKLIGTLLEEQVEEIILCESGEAAIAIAR-DHTLDVILMDIQMPEVDGIRASELI 728

Query: 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
            ++ ++ N                     PI+A+TA  I    E+ L+ GM  Y++KP +
Sbjct: 729 HQLPNHTN--------------------TPIIAVTAHAISGQQEQFLKIGMADYLAKPID 768

Query: 837 AEQLYREVSRFF 848
             +L + ++RF+
Sbjct: 769 ETRLTQALARFY 780


>gi|420065400|ref|ZP_14578206.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH20]
 gi|397431837|gb|EJK22508.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH20]
          Length = 898

 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 185/609 (30%), Positives = 293/609 (48%), Gaps = 115/609 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QI+TNL+GN+IKFTE G+I V V   +  + +  V+ E+    +T  G P  
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++          G +   V+     A+ +   +    ++V + S     L++    
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 663
               +++LV   V  +D S        L K  C     + L L      S      DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629

Query: 664 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
             + ++KPL ++ L  +L     A+       I + +LP            ++ VDDN  
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           NLK+  A L      V+  + G++A +      Q D   MDIQMP+MDG  A ++I  + 
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQMDLILMDIQMPDMDGIRACELIHHLS 736

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
           H+                       P++A+TA  ++   E+ L +GM+ Y++KP E E+L
Sbjct: 737 HHQQT--------------------PVIAVTAHALEGQREKLLSAGMNDYLAKPIEEEKL 776

Query: 841 YREVSRFFP 849
           +  + R+ P
Sbjct: 777 HALLLRYQP 785


>gi|152971650|ref|YP_001336759.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896247|ref|YP_002920983.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|378980364|ref|YP_005228505.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae HS11286]
 gi|402779252|ref|YP_006634798.1| BarA sensory histidine kinase [Klebsiella pneumoniae subsp.
           pneumoniae 1084]
 gi|419972587|ref|ZP_14488015.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH1]
 gi|419980265|ref|ZP_14495551.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH2]
 gi|419983491|ref|ZP_14498641.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH4]
 gi|419991224|ref|ZP_14506191.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH5]
 gi|419997353|ref|ZP_14512150.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH6]
 gi|420001152|ref|ZP_14515809.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH7]
 gi|420008188|ref|ZP_14522679.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH8]
 gi|420013715|ref|ZP_14528025.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH9]
 gi|420019361|ref|ZP_14533554.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH10]
 gi|420024852|ref|ZP_14538863.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH11]
 gi|420029839|ref|ZP_14543667.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH12]
 gi|420035568|ref|ZP_14549231.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH14]
 gi|420042434|ref|ZP_14555927.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH16]
 gi|420048142|ref|ZP_14561457.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH17]
 gi|420053213|ref|ZP_14566392.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH18]
 gi|420058687|ref|ZP_14571698.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH19]
 gi|420073224|ref|ZP_14585853.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH21]
 gi|420075588|ref|ZP_14588063.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH22]
 gi|420081440|ref|ZP_14593748.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH23]
 gi|421909840|ref|ZP_16339643.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
           pneumoniae subsp. pneumoniae ST258-K26BO]
 gi|421914520|ref|ZP_16344167.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
           pneumoniae subsp. pneumoniae ST258-K28BO]
 gi|424932058|ref|ZP_18350430.1| Hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KpQ3]
 gi|425075192|ref|ZP_18478295.1| signal transduction histidine-protein kinase BarA [Klebsiella
           pneumoniae subsp. pneumoniae WGLW1]
 gi|425082934|ref|ZP_18486031.1| signal transduction histidine-protein kinase BarA [Klebsiella
           pneumoniae subsp. pneumoniae WGLW2]
 gi|425085828|ref|ZP_18488921.1| signal transduction histidine-protein kinase BarA [Klebsiella
           pneumoniae subsp. pneumoniae WGLW3]
 gi|425093032|ref|ZP_18496116.1| signal transduction histidine-protein kinase BarA [Klebsiella
           pneumoniae subsp. pneumoniae WGLW5]
 gi|428932773|ref|ZP_19006343.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae JHCK1]
 gi|428940431|ref|ZP_19013515.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae VA360]
 gi|150956499|gb|ABR78529.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238548565|dbj|BAH64916.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|364519775|gb|AEW62903.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae HS11286]
 gi|397346576|gb|EJJ39690.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH2]
 gi|397350996|gb|EJJ44082.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH1]
 gi|397355123|gb|EJJ48133.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH4]
 gi|397363146|gb|EJJ55789.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH6]
 gi|397364573|gb|EJJ57203.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH5]
 gi|397372677|gb|EJJ65161.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH7]
 gi|397379798|gb|EJJ71989.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH9]
 gi|397383749|gb|EJJ75883.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH8]
 gi|397389053|gb|EJJ81003.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH10]
 gi|397398155|gb|EJJ89820.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH11]
 gi|397402298|gb|EJJ93901.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH12]
 gi|397407585|gb|EJJ98970.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH14]
 gi|397416086|gb|EJK07265.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH17]
 gi|397416236|gb|EJK07411.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH16]
 gi|397424630|gb|EJK15528.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH18]
 gi|397436525|gb|EJK27111.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH19]
 gi|397438200|gb|EJK28718.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH21]
 gi|397448087|gb|EJK38266.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH22]
 gi|397453205|gb|EJK43267.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH23]
 gi|402540194|gb|AFQ64343.1| BarA sensory histidine kinase [Klebsiella pneumoniae subsp.
           pneumoniae 1084]
 gi|405595395|gb|EKB68785.1| signal transduction histidine-protein kinase BarA [Klebsiella
           pneumoniae subsp. pneumoniae WGLW1]
 gi|405599253|gb|EKB72429.1| signal transduction histidine-protein kinase BarA [Klebsiella
           pneumoniae subsp. pneumoniae WGLW2]
 gi|405606337|gb|EKB79329.1| signal transduction histidine-protein kinase BarA [Klebsiella
           pneumoniae subsp. pneumoniae WGLW3]
 gi|405611374|gb|EKB84142.1| signal transduction histidine-protein kinase BarA [Klebsiella
           pneumoniae subsp. pneumoniae WGLW5]
 gi|407806245|gb|EKF77496.1| Hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae KpQ3]
 gi|410116240|emb|CCM82268.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
           pneumoniae subsp. pneumoniae ST258-K26BO]
 gi|410123276|emb|CCM86792.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
           pneumoniae subsp. pneumoniae ST258-K28BO]
 gi|426302308|gb|EKV64515.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae VA360]
 gi|426306762|gb|EKV68858.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae JHCK1]
          Length = 916

 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 185/609 (30%), Positives = 293/609 (48%), Gaps = 115/609 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QI+TNL+GN+IKFTE G+I V V   +  + +  V+ E+    +T  G P  
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++          G +   V+     A+ +   +    ++V + S     L++    
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 663
               +++LV   V  +D S        L K  C     + L L      S      DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629

Query: 664 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
             + ++KPL ++ L  +L     A+       I + +LP            ++ VDDN  
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           NLK+  A L      V+  + G++A +      Q D   MDIQMP+MDG  A ++I  + 
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQMDLILMDIQMPDMDGIRACELIHHLS 736

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
           H+                       P++A+TA  ++   E+ L +GM+ Y++KP E E+L
Sbjct: 737 HHQQT--------------------PVIAVTAHALEGQREKLLSAGMNDYLAKPIEEEKL 776

Query: 841 YREVSRFFP 849
           +  + R+ P
Sbjct: 777 HALLLRYQP 785


>gi|365140200|ref|ZP_09346255.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
           4_1_44FAA]
 gi|363653516|gb|EHL92465.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
           4_1_44FAA]
          Length = 916

 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 185/609 (30%), Positives = 293/609 (48%), Gaps = 115/609 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QI+TNL+GN+IKFTE G+I V V   +  + +  V+ E+    +T  G P  
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++          G +   V+     A+ +   +    ++V + S     L++    
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 663
               +++LV   V  +D S        L K  C     + L L      S      DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629

Query: 664 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
             + ++KPL ++ L  +L     A+       I + +LP            ++ VDDN  
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           NLK+  A L      V+  + G++A +      Q D   MDIQMP+MDG  A ++I  + 
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQMDLILMDIQMPDMDGIRACELIHHLS 736

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
           H                    +   P++A+TA  ++   E+ L +GM+ Y++KP E E+L
Sbjct: 737 H--------------------HQQTPVIAVTAHALEGQREKLLSAGMNDYLAKPIEEEKL 776

Query: 841 YREVSRFFP 849
           +  + R+ P
Sbjct: 777 HALLLRYQP 785


>gi|424911053|ref|ZP_18334430.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
 gi|392847084|gb|EJA99606.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
          Length = 1224

 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 199/657 (30%), Positives = 317/657 (48%), Gaps = 107/657 (16%)

Query: 226  GHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 285
            G+ +   V  + +++     +  L  +AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L
Sbjct: 639  GNYWLVIVTDVTEMKMREGELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELL 698

Query: 286  MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 345
              + LD  Q+ +      SG AL+++IN++LD +K+E+G+++L +VSF+    ++DV+SL
Sbjct: 699  AKSNLDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVSFDPAEAVEDVVSL 758

Query: 346  FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 405
             S  + +K +EL V I   V   +IGD GRFRQI+TNL+GN++KFTE GH+ V       
Sbjct: 759  LSSAALEKNIELVVRIDPSVFGKVIGDAGRFRQIVTNLVGNAVKFTETGHVLV------- 811

Query: 406  VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 465
                     ELS+                                +S+ A    L + VE
Sbjct: 812  ---------ELSA--------------------------------QSAEASEAILSLRVE 830

Query: 466  DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 525
            D+G GIP +    IF  F QV  S +R H GTG+GL+I+  LVG   G+I  VS    GS
Sbjct: 831  DSGIGIPSDKLETIFDKFSQVDSSATRRHEGTGLGLAITVGLVGLFNGKIDVVSEVGKGS 890

Query: 526  TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 585
            +F     F        +   ++ +  P SV+ E   ++ LV+D   +  ++    +Q   
Sbjct: 891  SFEVNIPF--------QMTERRRDVPPLSVAIE--NIRVLVIDDNDVNRRILTEQLQSWC 940

Query: 586  IQ---VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642
            I    VE     +  L + A+    I+ I+++  +      ++ L V    +    F   
Sbjct: 941  IDGHAVEGGPTGIAVLQEAAAVGLSIDAIILDYHM----PVMNGLDVVERIRADRRFDDI 996

Query: 643  LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAAS---------LQRA-----MGVG 688
              +   S+      T    +++ + +MKP R+ +L ++         L+RA      G  
Sbjct: 997  AIIFLTSMDVVGDETLFTDLNVQAHLMKPARARLLRSTLFDVVRDVRLKRARPEAFAGAS 1056

Query: 689  NKGNI----------RNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVC 738
            + G+           R  E+P++S+R       +L+ +DN+VN  V    L++ G   + 
Sbjct: 1057 DGGSSRPEGPASEKKRRAEVPTVSVRLRPSLIDVLVAEDNDVNQIVFTQILQQTGLRFLI 1116

Query: 739  VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYE 798
            V  GKKA +     +      MD+ MP M+G +AT+ IR  E             + A E
Sbjct: 1117 VGNGKKAVQ-AWEEYNPAIILMDVSMPVMNGHQATQAIRTAE-------------LAAAE 1162

Query: 799  NVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF-PPIPDR 854
                 HVPI+ +TA    A  + CL++GMD Y+SKP   E L  +++++    IP R
Sbjct: 1163 GR---HVPIIGVTAHTQDADRDLCLQAGMDDYLSKPISPEILEDKIAQWLGEDIPRR 1216


>gi|373952037|ref|ZP_09611997.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
 gi|373888637|gb|EHQ24534.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
          Length = 822

 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 186/608 (30%), Positives = 297/608 (48%), Gaps = 92/608 (15%)

Query: 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307
           E +K A+  + AKS FLA +SHEIRTPMNGV+GM  +L+ T L   QQDYV T + SG+ 
Sbjct: 295 EKRKIADEQNQAKSAFLANMSHEIRTPMNGVIGMTSLLISTSLTDEQQDYVETIRISGET 354

Query: 308 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 367
           L+SLIN++LD +K+ESGK+ELE   F+L +++++   L + K+ +KG++L   I   VP 
Sbjct: 355 LLSLINDILDFSKIESGKMELETQPFSLTSVIEETYDLLTVKADEKGLDLLYLIDADVPS 414

Query: 368 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 427
            +IGD  R RQI+ NL+ N IKFTEKG I +++ L+E+   +  + T   S K++  G P
Sbjct: 415 EIIGDVTRLRQILVNLVSNGIKFTEKGEILISIELLEK---AGSIYTLQFSVKDSGIGIP 471

Query: 428 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487
             D+ H  + F++F+                                          QV 
Sbjct: 472 -QDKFH--RLFQSFS------------------------------------------QVD 486

Query: 488 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 547
            S +R HGGTG+GL+IS+ LV  M+G I   S    GS F FT      +        +Q
Sbjct: 487 SSTTRKHGGTGLGLAISQRLVEAMQGSIRAESKYGEGSCFIFTIKVEASAQL------KQ 540

Query: 548 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 607
              +     +  +G KAL++D      K+ +   +   +   + +   Q     A  ++ 
Sbjct: 541 FQKRAPGEDAVLKGKKALILDDNLTNLKILKKQFEYWEMDASIFNHHEQAFQ--AMRNEH 598

Query: 608 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
            ++ +++  + EKD     + V  L K     Q+   +L +S      + + D     ++
Sbjct: 599 FDLAIIDMFMPEKD----GIDVARLIKSTFPGQNIPLILFSSAGYITMHNTLDHQLFAAI 654

Query: 668 IMKPLRSSMLAASLQRAMGVGNK----GNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 723
           + KP++   +  ++   +   NK     N  N  + + S         ILI +DN++N K
Sbjct: 655 LNKPVKYEHIKKTILSVLDKNNKLSPLVNKLNTGVYTKS-----SAINILIAEDNDINQK 709

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQ--FDACFMDIQMPEMDGFEATKIIREMEH 781
           +    L++ G     V  G    E+L    Q  +D   MD+QMPEMDG+EAT+++R    
Sbjct: 710 LVRRALEKLGLLSDLVFNG---LEVLHAVEQKNYDLILMDVQMPEMDGYEATRLVR---- 762

Query: 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
                        + YE+ S   V I+AMTA+ +    E  +  GMD Y+SKPF+   L 
Sbjct: 763 -------------KKYESASMRPV-IIAMTANALTGDKERAMSEGMDDYISKPFKIHDLK 808

Query: 842 REVSRFFP 849
            ++ ++FP
Sbjct: 809 EKIDQWFP 816


>gi|419764461|ref|ZP_14290701.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae DSM 30104]
 gi|397743044|gb|EJK90262.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae DSM 30104]
          Length = 916

 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 185/609 (30%), Positives = 293/609 (48%), Gaps = 115/609 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAVRIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QI+TNL+GN+IKFTE G+I V V   +  + +  V+ E+    +T  G P  
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++          G +   V+     A+ +   +    ++V + S     L++    
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 663
               +++LV   V  +D S        L K  C     + L L      S      DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629

Query: 664 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
             + ++KPL ++ L  +L     A+       I + +LP            ++ VDDN  
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           NLK+  A L      V+  + G++A +      Q D   MDIQMP+MDG  A ++I  + 
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQMDLILMDIQMPDMDGIRACELIHHLS 736

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
           H+                       P++A+TA  ++   E+ L +GM+ Y++KP E E+L
Sbjct: 737 HHQQT--------------------PVIAVTAHALEGLREKLLSAGMNDYLAKPIEEEKL 776

Query: 841 YREVSRFFP 849
           +  + R+ P
Sbjct: 777 HALLLRYQP 785


>gi|262041527|ref|ZP_06014724.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259041088|gb|EEW42162.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 916

 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 185/609 (30%), Positives = 293/609 (48%), Gaps = 115/609 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QI+TNL+GN+IKFTE G+I V V   +  + +  V+ E+    +T  G P  
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++          G +   V+     A+ +   +    ++V + S     L++    
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 663
               +++LV   V  +D S        L K  C     + L L      S      DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629

Query: 664 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
             + ++KPL ++ L  +L     A+       I + +LP            ++ VDDN  
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           NLK+  A L      V+  + G++A +      Q D   MDIQMP+MDG  A ++I  + 
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQVDLILMDIQMPDMDGIRACELIHHLS 736

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
           H+                       P++A+TA  ++   E+ L +GM+ Y++KP E E+L
Sbjct: 737 HHQQT--------------------PVIAVTAHALEGQREKLLSAGMNDYLAKPIEEEKL 776

Query: 841 YREVSRFFP 849
           +  + R+ P
Sbjct: 777 HALLLRYQP 785


>gi|400760181|ref|YP_006589784.1| putative two-component sensor histidine kinase/response regulator
           hybrid protein [Phaeobacter gallaeciensis 2.10]
 gi|398655653|gb|AFO89622.1| putative two-component sensor histidine kinase/response regulator
           hybrid protein [Phaeobacter gallaeciensis 2.10]
          Length = 759

 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 177/614 (28%), Positives = 296/614 (48%), Gaps = 91/614 (14%)

Query: 240 EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 299
           +E  + + E +K A+ A+ AKS+FLA +SHEIRTPMNGV+GM +++++T+LD  Q  Y  
Sbjct: 220 DEREYALEEARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILETDLDEDQTMYAE 279

Query: 300 TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 359
           T   SG AL+++IN++L+ +K+E+GK+ELE   FNL+  ++DV++L S K+ +K VE+ +
Sbjct: 280 TISKSGSALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAAEKNVEVTL 339

Query: 360 YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSS 419
                +PE   GD GR RQI+TN+ GN++KFT KG+++            IEV  E    
Sbjct: 340 RYDPSLPECYEGDVGRIRQILTNVAGNAVKFTGKGYVY------------IEVSGETDDD 387

Query: 420 KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 479
           +  L                                      +SV DTG GIP +   RI
Sbjct: 388 RTALR-------------------------------------ISVTDTGAGIPDDRLDRI 410

Query: 480 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSST 539
           F  F Q   + +R + GTG+GL+IS  L+  M G I   S    GS FT           
Sbjct: 411 FNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQSELGKGSVFTIDLPL------ 464

Query: 540 SNEHNSQQMNNQPNSVSS--EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
                 +   NQP       +F+G++ALVVD   +   +    +   G+Q        Q 
Sbjct: 465 ------RIRPNQPKRTQDVRDFKGLRALVVDDLELNRIILTERLATWGVQSVAAGSAHQA 518

Query: 598 LSQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 654
           L  +          ++IL + ++   D       + ++ +    ++    ++ +S+ ++ 
Sbjct: 519 LELLLDSRHDGTHYDVILQDFQMPGMDGKELAERIRDIPE----YRDLPIVILSSVENTI 574

Query: 655 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR-KIL 713
              + + +    V +KPLR++ L + + R +    +   +   +P   +   ++   K+L
Sbjct: 575 DREAREHLGHCEVALKPLRAAQLQSVMSRVLETATEEAPQ--AVPPQGVETSVVPEVKLL 632

Query: 714 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
           + +DN  N  V +  LK     V+    G++A  +    H  D   MD+ MP  DG +AT
Sbjct: 633 LAEDNRTNQLVVSRMLKAAPIEVLIAANGEEAVTMFQ-EHHPDIVLMDMMMPVKDGIDAT 691

Query: 774 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
             IR++E   +N + R                P++A+TA+ +Q+  EECL +GMD ++SK
Sbjct: 692 AEIRQLEK--DNGLGR---------------CPVVALTANALQSHREECLAAGMDDFLSK 734

Query: 834 PFEAEQLYREVSRF 847
           P   + L   V ++
Sbjct: 735 PINKKALLGAVGKW 748


>gi|449467325|ref|XP_004151374.1| PREDICTED: signal transduction histidine-protein kinase BarA-like
           [Cucumis sativus]
          Length = 625

 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 187/617 (30%), Positives = 298/617 (48%), Gaps = 122/617 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + +EL+ TQ+D++ T + S   L+
Sbjct: 41  KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 100

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L +  S DKG+EL + I + VP+ +
Sbjct: 101 TIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 160

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V       + +++E ++   ++T  G P  
Sbjct: 161 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQI---RDTGIGIPER 217

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 218 DQSRLFQAFR---------------------------------------------QADAS 232

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 233 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWF-------------HINLDLN 279

Query: 550 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN      V+   +GM+   V+P    A+ +   +    ++V V S     L+     
Sbjct: 280 --PNVQTDGPVTDCLKGMRLAYVEPNAAAAQCTLDVLSSTPLEV-VYSPTFSALANDHYD 336

Query: 605 SKIINM-------ILVEQEVWEKDTSVS-----TLFVNNLRKLGCGFQSKLFLLANSISS 652
             ++ +       + ++QE   K  S++     ++    L  L C  Q     L N    
Sbjct: 337 ILLLGIPVTFTGELTMQQERLAKAASMTGSPRASMTDYLLLALPCHAQINAEELKN---- 392

Query: 653 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKI 712
                  DG +  + ++KPL ++ L  +L     + ++       LP  +  H  L   +
Sbjct: 393 -------DGAA--ACLLKPLTATRLLPALTEYCRLTHQS------LPLENDEH-KLPMTV 436

Query: 713 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEA 772
           + VDDN  NLK+    L+     V     G +A E      QFD   MDIQMP MDG  A
Sbjct: 437 MAVDDNPANLKLIGVLLEDQVQHVELCTSGAEAVE-QAKQMQFDLILMDIQMPGMDGIRA 495

Query: 773 TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832
            ++IR++ H                        P++A+TA  +    E+ L +GM+ Y++
Sbjct: 496 CELIRQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMNDYLA 535

Query: 833 KPFEAEQLYREVSRFFP 849
           KP + E+L+  + R+ P
Sbjct: 536 KPIDEEKLHSLLLRYKP 552


>gi|124268043|ref|YP_001022047.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
 gi|124260818|gb|ABM95812.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
          Length = 1001

 Score =  244 bits (623), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 186/601 (30%), Positives = 288/601 (47%), Gaps = 81/601 (13%)

Query: 256 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEV 315
           A  AKSQF+AT+SHEIRTPMNGVLGM ++L+ T LD  Q+ + +    SG++L+ +IN++
Sbjct: 335 ASQAKSQFMATMSHEIRTPMNGVLGMTELLLGTALDSRQRRFAQAVYRSGESLLEIINDI 394

Query: 316 LDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGR 375
           LD +K+E+GKLEL    F  RA+++DVL L + ++Q++G+EL+      +P  L GD  R
Sbjct: 395 LDFSKIEAGKLELAPADFTPRALVEDVLELLAPRAQERGLELSFREEPGLPPALHGDALR 454

Query: 376 FRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSW 435
            RQ++TNL+ N+IKFTE G + V +  VE        ET L                   
Sbjct: 455 LRQVLTNLVANAIKFTEHGEVVVEMRRVEPTA----AETAL------------------- 491

Query: 436 KGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 495
                            ++ D + + + V DTG GIP EA SR+F  F Q    ++R +G
Sbjct: 492 -----------------ATGDRLWVELCVRDTGIGIPPEALSRLFIAFSQASSGMARRYG 534

Query: 496 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSV 555
           GTG+GL+IS+ LV  M G I   S P +GS F         SS  +  +  ++++ P   
Sbjct: 535 GTGLGLAISRQLVELMSGSITVRSQPGVGSRFCVRLPLSPASSDVDV-DMLELHDMP--- 590

Query: 556 SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS---GSKIINMIL 612
                 ++ LVVD       V    +   G++V V +D +  L ++ +    ++  ++ L
Sbjct: 591 -----ALRVLVVDDNETNRTVLENLLGAWGMEVVVANDGVHALERLHAERDAARSFDIAL 645

Query: 613 VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL 672
           ++ ++   D     L + +       F     ++ +S+SS         V     + KP+
Sbjct: 646 IDMQMPRLD----GLQLADRISAEPDFADVKLIMLSSVSSPDDAKRAQAVGFKRFVNKPV 701

Query: 673 RSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRY 732
           R + L  ++    GV   G   + +          +G  IL+V+DN VN +V    L+ +
Sbjct: 702 RKAELRQAILGVSGVAGAGGGSSRK----------IGAHILVVEDNPVNQEVIGQMLRHF 751

Query: 733 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 792
           G  V       +    L    +FD   MDIQMP MDG EA               RRG  
Sbjct: 752 GCRVQLASSALEGLRALC-AERFDLIMMDIQMPGMDGVEAL-----------GWFRRGPG 799

Query: 793 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
              A+        P++A+TA+ +    E  L  G D Y+SKPF   QL+  +S+    IP
Sbjct: 800 ERFAFRTPPT--TPVVAVTANALGGDRERFLGLGFDEYLSKPFRQSQLHTMLSQRL-NIP 856

Query: 853 D 853
           D
Sbjct: 857 D 857


>gi|441504433|ref|ZP_20986427.1| BarA sensory histidine kinase [Photobacterium sp. AK15]
 gi|441427900|gb|ELR65368.1| BarA sensory histidine kinase [Photobacterium sp. AK15]
          Length = 920

 Score =  244 bits (623), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 294/615 (47%), Gaps = 123/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T L  +QQDY++T + S   L+
Sbjct: 280 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTRLSSSQQDYLQTIEKSANNLL 339

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+E+GKL LE + F+    LD+V+ L +  + +KG+EL + I +R+P  L
Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFTESLDEVMKLLAPSAHEKGLELTLKIDERIPAGL 399

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q++TNL+GN++KFTE+G+I V          S+E++T+  ++          
Sbjct: 400 IGDPLRIQQVLTNLIGNAVKFTERGNIDV----------SVELKTDKDAN---------- 439

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                       I+L   V DTG GI    Q+++F  F Q   S
Sbjct: 440 ----------------------------IDLQFMVRDTGIGISERQQAQLFQAFSQADAS 471

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT                   
Sbjct: 472 ISRRYGGTGLGLVITQKLVTQMGGEISLTSRLHQGSTFWFTLRLTKTDLPV--------- 522

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSDQLQ----CLSQIA 602
           +QP   SS     K L+++P    A V +  + R G+ V     + D  +     L  +A
Sbjct: 523 SQPIDTSS-LTDKKLLLIEPNMQAASVIQQRLIRAGLHVTYRSTMPDDAEHHHFALLNLA 581

Query: 603 SGSK-----IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 657
            G +     +++M+   +++ +K        + +L         +L              
Sbjct: 582 PGEQPPIATLLDMVFKAEQLADK-------VMVSLPTTELALSERLV------------- 621

Query: 658 STDGVSIPSVIMKPLRSSMLAASL--QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIV 715
                 + + + KPL    L  SL  +  M V  +  +     P  +++ L     ++ V
Sbjct: 622 ---NAGVTACLPKPLAHRKLLESLISEPDMLVEPEPQLPE---PVSTIQPL----TVMAV 671

Query: 716 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI 775
           DDN  NLK+ +A L      V+    G++A E       FD  FMDIQMPEMDG  A++ 
Sbjct: 672 DDNPANLKLISALLSERVETVITATGGRRAVE-YASQKAFDLIFMDIQMPEMDGVTASQE 730

Query: 776 IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
           I + E                     N H P++A+TA  +    E  L +GMD Y++KP 
Sbjct: 731 IHKTE--------------------LNQHTPVIAVTAHAMVGERERLLDAGMDDYLTKPI 770

Query: 836 EAEQLYREVSRFFPP 850
           E   L + ++++  P
Sbjct: 771 EEHILQQILAKWTHP 785


>gi|283778609|ref|YP_003369364.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
 gi|283437062|gb|ADB15504.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
          Length = 1314

 Score =  244 bits (623), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 182/633 (28%), Positives = 294/633 (46%), Gaps = 110/633 (17%)

Query: 259  AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 318
            AKS FLA +SHEIRTP+NGV+GML++L  T LD  Q  YV  A++S   L+ LIN+VLD 
Sbjct: 599  AKSAFLANMSHEIRTPLNGVIGMLELLGTTTLDERQNRYVHIARSSAGTLLGLINDVLDF 658

Query: 319  AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 378
            +K+E+GKLELE V F+L ++L+DV  +FS ++ +KG+EL+  I   VP  + GDP R RQ
Sbjct: 659  SKIEAGKLELERVQFDLHSLLEDVAEMFSHRANEKGLELSCRILPGVPTNVYGDPERIRQ 718

Query: 379  IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 438
            ++ NL+ N+IKFT++G + +     E+ V S  V     S  +T  G P ADR       
Sbjct: 719  VLINLVNNAIKFTKQGEVILR---AEQQVHSSGVSRMRISVIDTGIGIP-ADR------- 767

Query: 439  KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 498
                                                  S++F PF QV  S +R +GGTG
Sbjct: 768  -------------------------------------SSQLFAPFTQVDASTTRKYGGTG 790

Query: 499  IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNS-VSS 557
            +GL+I + L+  M G +G  S+   GSTF                   Q+N  P S V+ 
Sbjct: 791  LGLAICRQLIELMGGRVGVDSVEGNGSTFWCEVPL----------EVAQVNTAPRSPVAE 840

Query: 558  EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---SKIINMILVE 614
              +G+  L VD      ++    +   G++V    D LQ L+Q+ +     K   +++++
Sbjct: 841  TLRGLAVLTVDDTDTNLEILHDQLTSWGMRVTAARDGLQALAQLRTAVRSGKKYPLVILD 900

Query: 615  QEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRS 674
             ++ E D     L +    K     +    L+  S+      +    + +  V+ KP+R 
Sbjct: 901  HQMPEMD----GLQLAAAIKGDALLRDTNLLMLTSVDQLVDRSKWSSLGLAGVMTKPIRQ 956

Query: 675  SMLAASLQRAM-------GVGNKGNIRNWELPSMSLRHLLL------------------- 708
            S L  ++   +        + +  +      P+   + ++L                   
Sbjct: 957  SRLFDAIAGVLKHQESLPALPDSDSSATLPAPAAPTKPVMLREVASAPAYSRTEGATPQE 1016

Query: 709  -----GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 763
                 G K+L+ +DN +N  V +  L+  G A   V  G +A + L+    +    MD Q
Sbjct: 1017 ILAQCGLKLLVAEDNEINQMVTSEILRGSGYACDVVSNGNQAIDALV-RGGYALVLMDCQ 1075

Query: 764  MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 823
            MPE+DGF ATK IR +E +             +  +     +P++A+TA+ +    + CL
Sbjct: 1076 MPELDGFAATKKIRALEQS------------GSLTHAVQGPMPVVALTANAVYGDRDVCL 1123

Query: 824  RSGMDGYVSKPFEAEQLYREVSRFFPPIPDRSP 856
             +GM+ Y +KP +   L   ++R   P+ ++ P
Sbjct: 1124 AAGMNDYTTKPVDRAILLGTIARNLQPVIEKIP 1156


>gi|345302947|ref|YP_004824849.1| histidine kinase [Rhodothermus marinus SG0.5JP17-172]
 gi|345112180|gb|AEN73012.1| histidine kinase [Rhodothermus marinus SG0.5JP17-172]
          Length = 1346

 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 198/702 (28%), Positives = 322/702 (45%), Gaps = 140/702 (19%)

Query: 199  CRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMME--------LK 250
             RF+   P+   A   ++ + ++  LVG I +  + RI + +E    +++         K
Sbjct: 726  ARFEITPPFWQTAWFAALMVTLLGLLVGGIHRYRIYRIEQQKEQLEALVQERTAELQAQK 785

Query: 251  KKAEA---------------------ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE 289
            ++ EA                     A   KS+FLA +SHEIRTPMNGVLGM ++L++ +
Sbjct: 786  RQLEATLEDLRRTKEELERANEELVRASRLKSEFLANMSHEIRTPMNGVLGMTELLLEMD 845

Query: 290  LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGK 349
            L   Q++ V     SG+ L++++N++LD +K+E+G+LELE + FNL+  ++DV++LF+ +
Sbjct: 846  LTKEQRECVEIIHRSGETLLTILNDILDFSKIEAGRLELENIDFNLQETIEDVITLFAPR 905

Query: 350  SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 409
            +  K +EL  ++ +R  E + GDP R RQ+++NL+GN+IKFTE+G + V   L  E +D 
Sbjct: 906  AAAKQLELICFVEERALE-VQGDPHRLRQVLSNLIGNAIKFTERGEVVVEAEL--ERLDE 962

Query: 410  IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQ-DGSTSPFKSSSADLINLIVSVEDTG 468
                  + S ++T  G P     H    F+ F Q DGST                     
Sbjct: 963  RRAHWRI-SVRDTGIGIPPDRLAHL---FQPFTQLDGST--------------------- 997

Query: 469  QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 528
                                  +R +GGTG+GL+ISK LV  M G IG  S    GSTFT
Sbjct: 998  ----------------------TRRYGGTGLGLAISKQLVEMMGGTIGVESEVGKGSTFT 1035

Query: 529  FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 588
                F           S Q     +   +  + ++ L+VD      ++ R      G+  
Sbjct: 1036 VRIPF---------RLSSQRKLNGDERRALLKDVRVLIVDDNEANREILRRQTLGWGMVP 1086

Query: 589  EVVSDQLQCLSQIASGSK--------IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640
             +     + L  + + ++        I+++++ E +          +    +++      
Sbjct: 1087 TLARSGAEALEMMRAAARQGHPFELAILDLMMPEMD--------GIMLAREIKQDPSLAD 1138

Query: 641  SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG-----VGNKGNIRN 695
            +   LL++ + +   + + D     +V+ KP R S L  +L R +      V  K   + 
Sbjct: 1139 TPRILLSSYLFTREDHRAMDETLFAAVLSKPTRQSYLFNTLVRVLQESRPVVAAKQQAQQ 1198

Query: 696  WE----------LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA 745
             E           PS + R    G  +L+ +DN VN KVA   L+R G     V  GK+A
Sbjct: 1199 DESAATPSDSSATPSSTPRPAGRG-HLLLAEDNPVNQKVALYHLERLGYTCDVVGDGKQA 1257

Query: 746  TELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 805
             E  +    +DA  MD+ MP MDGFEAT  IRE E                       H 
Sbjct: 1258 VEAAL-RGGYDAILMDVHMPVMDGFEATAQIREREAELGR------------------HT 1298

Query: 806  PILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
            PI+AMTA+ ++   E CL +GMD Y++KPF+ ++L   + R+
Sbjct: 1299 PIIAMTANALRGERERCLEAGMDDYIAKPFKKDELKTVLERW 1340


>gi|381165686|ref|ZP_09874913.1| Putative two-component sensor histidine kinase (fragment),
           unorthodox system [Phaeospirillum molischianum DSM 120]
 gi|380685176|emb|CCG39725.1| Putative two-component sensor histidine kinase (fragment),
           unorthodox system [Phaeospirillum molischianum DSM 120]
          Length = 919

 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 181/596 (30%), Positives = 285/596 (47%), Gaps = 92/596 (15%)

Query: 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 318
           AKS+FLAT+SHEIRTPMNG++GM  +L+DT+L + QQ +  T +AS +AL+ +IN++LD 
Sbjct: 278 AKSEFLATMSHEIRTPMNGIIGMTSLLLDTDLTLEQQHFANTVRASAEALLHIINDILDF 337

Query: 319 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 378
           +K+E+G+LELE  +F +R +++ V+ + S + + + +EL+  +         GD GR RQ
Sbjct: 338 SKMEAGRLELEQSAFEIRPLIEGVVDILSPRVRGRDIELSYLVPLETRGVFRGDTGRLRQ 397

Query: 379 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 438
           I+ NL GN+IKFTE G + +   L                                    
Sbjct: 398 ILLNLAGNAIKFTEHGTVSIQASL------------------------------------ 421

Query: 439 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 498
               QDG              L VSV+DTG GIP  A+ R+F  F Q   S +R  GG+G
Sbjct: 422 ---KQDGPERAI---------LHVSVQDTGIGIPAAARDRLFGMFSQADASTARRFGGSG 469

Query: 499 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 558
           +GL+I K L+  M G+IGF S   +GSTF F+         +++  S+ + + P      
Sbjct: 470 LGLAICKRLLVLMGGQIGFDSEEGVGSTFWFSVPL----DRTDDTPSEDLPDNP------ 519

Query: 559 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--ASGSKIINMILVEQE 616
            +  + LVVD      ++  + ++  G  V +  +    L+ I  A G  +    ++   
Sbjct: 520 LRDARILVVDDNFTNREIFTHQLRAWGAAVTLADNAATGLADIRAAQGRGVPFETVILDH 579

Query: 617 VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 676
                T +    V       CG      +LA+S      +     +S+  +++KP+R S 
Sbjct: 580 QMPGMTGLDLAAVLRADPTTCGLP---IILASSADLGSLHDKAAQLSLDQILIKPIRQST 636

Query: 677 LAASLQRAMGVGNKG----NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRY 732
           L  SL   +G G  G    N      PS      LL  K+L+ +DN +N +VA   L + 
Sbjct: 637 LLDSLMTLLGRGRSGPHPINATETSSPSP-----LLSLKVLVAEDNAINQQVAVGLLVKL 691

Query: 733 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 792
           G      + G +A E +M    +D   MD+QMP +DG +AT+ IR +    +N       
Sbjct: 692 GHRADVADDGGEAIERVM-RGDYDLVLMDMQMPGIDGLDATRSIRALAPPKSN------- 743

Query: 793 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
                       + I+AMTA+ +    + CL  GMD Y+SKP +  +L + + R+ 
Sbjct: 744 ------------IVIIAMTANAMTGDRDLCLTGGMDDYISKPIDRRRLAQCLDRWM 787


>gi|108757295|ref|YP_630537.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108461175|gb|ABF86360.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 944

 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 188/628 (29%), Positives = 301/628 (47%), Gaps = 110/628 (17%)

Query: 243 YHGMMELKKKAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 299
           YH + +L++  +AA   + AKS FLAT+SHEIRTPMN ++GM  +L+D  L   Q+D+V 
Sbjct: 250 YHDITDLERARKAAEAANQAKSLFLATMSHEIRTPMNAIIGMTGLLLDRALTEEQRDFVA 309

Query: 300 TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 359
           T + S +AL++L+N+VLD +K+E+G+ E E   F+LR  ++ VL L + ++ +KG++L  
Sbjct: 310 TIRQSSEALLTLLNDVLDFSKIEAGRFEAELRPFDLRQCVESVLDLMAVRASEKGLDLGC 369

Query: 360 YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSS 419
            ++  +P+ L+GD  R RQ++ NL+GN++KFTE G   V+V                   
Sbjct: 370 DLAPPLPQMLVGDASRLRQVLLNLVGNALKFTEHGGAVVSV------------------- 410

Query: 420 KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 479
                           +G      +G+             L  SV+DTG GIP + ++ +
Sbjct: 411 ----------------EGLALGGTEGAAD---------WELTFSVQDTGLGIPDDRRTGL 445

Query: 480 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS--IPNIGSTFTFTAVFGNGS 537
           F PF Q+  S+SR  GGTG+GL+ISK LV  M G I   S  +P  G+TF FT       
Sbjct: 446 FQPFNQLDASVSRRFGGTGLGLAISKRLVEAMGGTIWVESEGVPGQGTTFRFT------- 498

Query: 538 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
               +   Q    QP       QG + LVVD   +  ++    +Q  G+     +  +  
Sbjct: 499 -LRAQAAPQAYAVQPRQEQGLLQGRRVLVVDDNALFRRLLGRQLQAWGLVPVESASGMDA 557

Query: 598 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 657
           L+Q+ +G+   + +L++  +   D    T     +R+     +++   L    +  R   
Sbjct: 558 LAQLEAGAS-FDAVLIDHHMPGLD---GTALAERIRQRE---ETRALPLVLVSTPGRRGN 610

Query: 658 STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM--------SLRHLLLG 709
             +G+    V+ +PL+ S L  +L             +  LP +        S      G
Sbjct: 611 PPEGL-FAGVLSRPLKDSQLYDALVSCF---------SQHLPQLPEPRQTRPSRAGPFPG 660

Query: 710 RK--------ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761
            +        IL+V+DN  N K+A   L+R G        G++A + L    ++DA  MD
Sbjct: 661 ERPGDTVPLDILLVEDNATNQKLALLVLERLGYRADVALNGRQALQALS-QKRYDAVLMD 719

Query: 762 IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 821
           +QMPEMDG EAT+ IR+            E+  +A   V       +AMTA+ + +  E+
Sbjct: 720 LQMPEMDGLEATRRIRQ------------ELPPKAQPWV-------IAMTANAMDSDREQ 760

Query: 822 CLRSGMDGYVSKPFEAEQLYREVSRFFP 849
           C  +GMD ++ KP   E L   + R  P
Sbjct: 761 CFSAGMDDFLGKPIRVEALTAALLRCQP 788


>gi|262273705|ref|ZP_06051518.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886]
 gi|262222120|gb|EEY73432.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886]
          Length = 914

 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 184/605 (30%), Positives = 286/605 (47%), Gaps = 104/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +QQDY++T + S   L+
Sbjct: 277 KKNAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSSSQQDYLQTIEKSANNLL 336

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+E+GKL LE + F+    LD+V+ L +  + +KG+EL + I  R+P  +
Sbjct: 337 TIINDILDFSKLEAGKLLLENIPFDFEDSLDEVMRLLAPMAHEKGLELNLRIDPRIPAGV 396

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q++TNL+GN+ KFTE+GHI V+V L ++  + +E++                
Sbjct: 397 IGDPLRIQQVLTNLIGNATKFTERGHINVSVELKQQRDERLELQ---------------- 440

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                             + DTG GI    QS++F  F Q   S
Sbjct: 441 --------------------------------FVIRDTGIGISERQQSQLFQAFRQADTS 468

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR +GGTG+GL I++ LV +M G+IGF S  + GSTF FT                   
Sbjct: 469 ISRRYGGTGLGLVITQKLVQQMGGDIGFSSRLHQGSTFWFTMTLIK-------------T 515

Query: 550 NQPNSVSSEFQGMKA---LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
           + P     + +G+K    L+++P      + R  +  L I +   ++    L   A  + 
Sbjct: 516 DLPLVQPIDAEGLKGQSLLLIEPNAESRHMMRDRLSHLSIDIVDYAE----LPDNAPFTS 571

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK-LFLLANSISSSRANTSTDGVSIP 665
              + +   EV   DT  +      + K    F  K +F L  +  +   +  + GV+  
Sbjct: 572 CALICVDAAEVPTADTLAA------MAKQAESFTDKVIFCLPTTELALSESLLSSGVA-- 623

Query: 666 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 725
           + + KPL    L   LQ     G + ++     P++  +   +   ++ VDDN  NLK+ 
Sbjct: 624 ACLAKPLSVRKLIEQLQ-----GQRHSLAPLP-PAVETQTDKVPISVMAVDDNPANLKLI 677

Query: 726 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785
            A LK     VV    GK+A E      +FD   MDIQMPEMDG  A   IR        
Sbjct: 678 TALLKERVTHVVTASDGKQAVEQAQ-TQKFDLILMDIQMPEMDGVTACHEIR-------- 728

Query: 786 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 845
                       +   N   P++A+TA  +    E  L  GMD Y++KP E   L + + 
Sbjct: 729 ------------QTPMNHLTPVVAVTAHAMSGERERLLNEGMDDYLTKPIEEHILEQVLH 776

Query: 846 RFFPP 850
            +  P
Sbjct: 777 HWTHP 781


>gi|345300630|ref|YP_004829988.1| multi-sensor hybrid histidine kinase [Enterobacter asburiae LF7a]
 gi|345094567|gb|AEN66203.1| multi-sensor hybrid histidine kinase [Enterobacter asburiae LF7a]
          Length = 919

 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 191/630 (30%), Positives = 293/630 (46%), Gaps = 156/630 (24%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + +EL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I V V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDVLVEKRALSNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F          S + N   + 
Sbjct: 475 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWF--------HISLDLNPNVLT 526

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAK-----------------------VSRYHIQRLGI 586
           + P  V+   +GM+   V+P    A+                       V  Y I  +GI
Sbjct: 527 DGP--VTDCLKGMRLAYVEPNAAAAQSTLDVLSSTPLEIIYSPTFSALAVEHYDILLMGI 584

Query: 587 QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 646
            V    +                 + ++QE   K  S++      L  L C  Q     L
Sbjct: 585 PVTFTGE-----------------LTMQQERLAKAASMTDYL---LLALPCHAQINAEEL 624

Query: 647 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL-------QRAMGVGNKGNIRNWELP 699
            N           DG +  + ++KPL ++ L  +L       Q A+ + N       +LP
Sbjct: 625 KN-----------DGAA--ACLLKPLTATRLLPALTEYCRLSQHALPLVND----EQKLP 667

Query: 700 SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 759
            MS         ++ VDDN  NLK+    L      V     G +A E      QFD   
Sbjct: 668 -MS---------VMAVDDNPANLKLIGVLLGDQVQHVELCTSGAQAVE-QAKQMQFDLIL 716

Query: 760 MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819
           MDIQMP MDG  A ++IR++ H                        P++A+TA  +    
Sbjct: 717 MDIQMPGMDGIRACELIRQLPH--------------------QQQTPVIAVTAHAMAGQK 756

Query: 820 EECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
           E+ L +GM+ Y++KP + E+L+  + R+ P
Sbjct: 757 EKLLSAGMNDYLAKPIDEEKLHNLLLRYKP 786


>gi|343502907|ref|ZP_08740745.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio tubiashii ATCC 19109]
 gi|418479493|ref|ZP_13048574.1| two-component regulatory system multi-sensor hybrid histidine
           kinase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
 gi|342812985|gb|EGU47967.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio tubiashii ATCC 19109]
 gi|384572892|gb|EIF03397.1| two-component regulatory system multi-sensor hybrid histidine
           kinase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
          Length = 1199

 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 174/606 (28%), Positives = 299/606 (49%), Gaps = 84/606 (13%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +  A++A+ AKS FLA +SHEIRTPMN ++GM  + + T+L   Q++Y+   + S  +L+
Sbjct: 471 RDDADSANSAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQRNYIHKVKLSADSLL 530

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            LIN++LD +K+E+GKL++E V F+L  +LD++ +L   ++ ++G+EL ++I   VP TL
Sbjct: 531 GLINDILDFSKIEAGKLDIENVDFHLENVLDNISNLVGLRASERGLELLIHIDRDVPTTL 590

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R  QI+ NL  N++KFTEKG I +++ + E   D + +E            + V 
Sbjct: 591 VGDPLRLGQILINLANNAVKFTEKGEIKISIRVAERNGDDLVLE------------FSVE 638

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D                                    +G G+  E  +++F+ F Q   S
Sbjct: 639 D------------------------------------SGIGMTAEQTAKLFSKFTQADSS 662

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R +GGTG+GL+ISK L   M G+I   S    GS FTFT      S  S+    +++ 
Sbjct: 663 TTRKYGGTGLGLAISKELSQLMGGDIRVESEAGKGSCFTFTV----ASKVSHALKQEEI- 717

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSK 606
               +V  E   ++ LVVD       +    ++ L      VS   D L  L+Q  S  +
Sbjct: 718 ----AVPVELGKLRVLVVDDNASARIIVEDILESLRFDAHSVSSADDALAELNQALSNEQ 773

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
             ++++ + ++  KD  +  L +   +         L L A             G+++PS
Sbjct: 774 PYDLLITDWQMPGKD-GIDLLEMVKAQISQSQQPKPLMLTAFGREELTEIIEQRGITVPS 832

Query: 667 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNVNLKV 724
           ++ KP+ +S L  ++    GV +    R+       L ++  L G ++L+V+DN +N ++
Sbjct: 833 ILDKPITASHLFDAIVSLYGVDHARLSRSEAEEQNQLANVQQLAGAQLLLVEDNEINQEL 892

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
           A   L+     V   E G+ A + L   ++FD   MD QMP MDG+EAT+ IR       
Sbjct: 893 AIELLEGQQMHVTVAENGQVALD-LYKTNEFDGILMDCQMPIMDGYEATQYIR------- 944

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                          +S+  +PI+AMTA+V++    +   +GM+  ++KP +   ++  +
Sbjct: 945 -------------TKLSDHSIPIIAMTANVMERDKVKAAEAGMNDIIAKPIDVGSMFSTL 991

Query: 845 SRFFPP 850
           +++  P
Sbjct: 992 AKWITP 997


>gi|242238298|ref|YP_002986479.1| hybrid sensory histidine kinase BarA [Dickeya dadantii Ech703]
 gi|242130355|gb|ACS84657.1| Hpt sensor hybrid histidine kinase [Dickeya dadantii Ech703]
          Length = 918

 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 185/598 (30%), Positives = 284/598 (47%), Gaps = 98/598 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T L  TQQDY++T + S   L+
Sbjct: 278 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQQDYLQTIERSANNLL 337

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F+L   LD+V+ L +  + +KG+EL + I   VPE  
Sbjct: 338 NIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVVMLLAHTAHEKGLELTLNIQHDVPEQF 397

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE+G+I             I +E         L      
Sbjct: 398 IGDPLRLQQIITNLLGNAIKFTEQGNI------------DIRIEKRKQEQHQVL------ 439

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                         L + ++DTG GI    Q+++F  F Q   S
Sbjct: 440 ------------------------------LEIQIKDTGIGIAEIQQAQLFQAFRQADTS 469

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S  N G+TF  T                Q+N
Sbjct: 470 ISRRHGGTGLGLVITQKLVREMGGDISFHSKLNQGTTFWCTLKL-------------QLN 516

Query: 550 N---QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
               +PN +    +G     V+  P  A+ +   +    + V   S  L+ L      ++
Sbjct: 517 PHVLEPNHLFDMLKGKNLAYVESNPTAAQATLDILVHTPLTVS-YSPTLEQLP-----NR 570

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
             +++LV   +  ++T +   F   +R+  C   S + L   S++   A        I +
Sbjct: 571 AFDILLVGVPISYRNTLLD--FTPTIREF-CRLASNVILALPSLAEMDAE-QLKSFGIHA 626

Query: 667 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
            + KP+ +  L   LQ          +     P   L  L L   ++ VDDN  NLK+  
Sbjct: 627 CLSKPITAPRLLTILQDNRLFSRSTAVATQPAPHSQLERLSL--TVMAVDDNPANLKLIG 684

Query: 727 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
           A L+     ++  + G +A       +  D   MDIQMP MDG +A+++I ++  + N  
Sbjct: 685 ALLEEQVENIILCDNGAEAVA-KAKKNALDVILMDIQMPGMDGLQASELIHQIPLHRN-- 741

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                              PI+A+TA  +    E+ L+SGMD Y++KP + E + R+V
Sbjct: 742 ------------------TPIVAVTAHTMNGEREQLLKSGMDDYLAKPID-EHMLRQV 780


>gi|152987692|ref|YP_001349930.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7]
 gi|452879919|ref|ZP_21956970.1| sensor/response regulator hybrid [Pseudomonas aeruginosa VRFPA01]
 gi|150962850|gb|ABR84875.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7]
 gi|452183578|gb|EME10596.1| sensor/response regulator hybrid [Pseudomonas aeruginosa VRFPA01]
          Length = 925

 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 283/615 (46%), Gaps = 121/615 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +K+A  A   KS+FLA +SHEIRTP+NG+LG  ++L  +EL   QQDY+ T Q S ++L+
Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLSTIQKSAESLL 333

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +INE+LD +K+E+GKL LE + FNLR ++ D L++ +  + +K +EL   +    P  L
Sbjct: 334 GIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDTPVQL 393

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R +QI+TNL+GN+IKFT+ G + V   L +E                        
Sbjct: 394 QGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDE------------------------ 429

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                   S D   L +SV+DTG G+  + Q  +F  F Q   S
Sbjct: 430 ------------------------SDDRAQLRISVQDTGIGLSEDDQQALFKAFSQADNS 465

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           +SR  GGTG+GL ISK L+ +M GEIG  S P  G+ F  +         S         
Sbjct: 466 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSLPKSREDSE-------- 517

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD--QLQ----------- 596
               + +S   G +  +++P+ +  +   + +   G++V    D   LQ           
Sbjct: 518 ---TAGASWAAGQRVALLEPQELTRRALHHQLSDFGLEVSEFEDLASLQEHLRNPPPGQL 574

Query: 597 --CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 654
              L+ +   + +     + Q  WE              +LGC    K  +L  +   ++
Sbjct: 575 PLSLAVLGVSAAMYPPEQLSQSFWE------------FERLGC----KTLVLCPTTEQAQ 618

Query: 655 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KI 712
            + S   +    V  KP  +  L   LQ  + V    + +     S        GR  ++
Sbjct: 619 YHAS---LPDEQVEAKPACTRKLQRKLQELLQVRPARSDKPHAAAS--------GRPPRL 667

Query: 713 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEA 772
           L VDDN  NL +    L   GA V  V+ G  A E++    +FD  FMD+QMP MDG +A
Sbjct: 668 LCVDDNPANLLLVQTLLSDLGAQVTAVDSGYAALEVVQ-RERFDLVFMDVQMPGMDGRQA 726

Query: 773 TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832
           T+ IR                 EA   VS   VP++A+TA  +       L++GMD Y++
Sbjct: 727 TEAIRRW---------------EAEREVSP--VPVIALTAHALSNEKRALLQAGMDDYLT 769

Query: 833 KPFEAEQLYREVSRF 847
           KP + +QL + V ++
Sbjct: 770 KPIDEQQLAQVVLKW 784


>gi|330446946|ref|ZP_08310597.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491137|dbj|GAA05094.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 931

 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 188/614 (30%), Positives = 290/614 (47%), Gaps = 119/614 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L+ +Q+DY+ T + S   L+
Sbjct: 280 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTKLNTSQKDYLLTIENSANNLL 339

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+E+GKL LE + F+    LD+V+ L +  + +KG+EL + I +R+P  L
Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRLLAPSAHEKGLELTLKIDNRIPPGL 399

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q++TNL+GN++KFTE G+I V+V L  ++ ++IE++                
Sbjct: 400 IGDPLRIQQVVTNLIGNAVKFTEHGNIDVSVELKSDIDNNIELQ---------------- 443

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                             V DTG GI    Q+++F  F Q   S
Sbjct: 444 --------------------------------FMVRDTGIGISERQQAQLFQAFSQADAS 471

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR +GGTG+GL I++ LV +M GE+   S  + GSTF FT            + +    
Sbjct: 472 ISRRYGGTGLGLVITQKLVSQMGGEVSLTSRLHQGSTFWFTIKM---------NKTDLPV 522

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ----------LQCLS 599
           +QP   +S  +G   L+V+     A V +  +   G+ V   +            L CLS
Sbjct: 523 SQPIDTTS-LEGKSLLLVEANMQAASVIQQRLMLAGVHVTYRASMPDDIDHHDFALLCLS 581

Query: 600 --QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 657
             +      I+N +   ++  EK              L C       L    ++ S   T
Sbjct: 582 PGEQPPLPVILNDVFKAEQTAEK-------------VLVC-------LPTTELALSEKLT 621

Query: 658 STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM-SLRHLLLGRKILIVD 716
            T GVS  + + KPL        L  A+   +       E+P + +    L    ++ VD
Sbjct: 622 QT-GVS--ACLGKPLAQR----KLFEALCDNDDEQQSELEVPLLPTTTETLQPLTVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
           DN  NLK+ +A L      V+    GKKA E       FD  FMDIQMPEMDG  A + I
Sbjct: 675 DNPANLKLISALLGERVETVITATGGKKAVEYAQ-SKAFDLIFMDIQMPEMDGVTACQKI 733

Query: 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
            E   N N                     P++A+TA  +    E  + +GMD Y++KP E
Sbjct: 734 HETALNKN--------------------TPVIAVTAHAMAGERERLINAGMDDYLTKPLE 773

Query: 837 AEQLYREVSRFFPP 850
              L + ++++  P
Sbjct: 774 EHILQQILAKWIAP 787


>gi|333899683|ref|YP_004473556.1| multi-sensor hybrid histidine kinase [Pseudomonas fulva 12-X]
 gi|333114948|gb|AEF21462.1| multi-sensor hybrid histidine kinase [Pseudomonas fulva 12-X]
          Length = 917

 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 188/605 (31%), Positives = 287/605 (47%), Gaps = 102/605 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +K+A  A   KS+FLA +SHEIRTP+NG+LG  ++L  +EL   QQDY+ T + S  +L+
Sbjct: 277 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLSTIEQSAGSLL 336

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+INEVLD +K+E+GKL LE + FNLR +L D L++ +  + +K +EL   +    P  L
Sbjct: 337 SIINEVLDFSKIEAGKLVLENIPFNLRDLLQDTLTILAPTAHEKKLELLSLVYRDTPVWL 396

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R +Q++TNL+ N+IKFT +G I +   L +E                       A
Sbjct: 397 SGDPLRLKQVLTNLVSNAIKFTREGSIVIRAMLEDE----------------------TA 434

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           DR                            L +SV DTG G+  E    +F  F Q   S
Sbjct: 435 DRAQ--------------------------LRISVRDTGIGLADEDLRALFQAFSQADNS 468

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ++R  GGTG+GL ISK L+ +M GEIG  S P  GS F          S ++E       
Sbjct: 469 MTRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWININLPKARSEADE------- 521

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSK 606
            QP +++    G +  +++ R +  +  ++ ++  G+QV   +D       ++Q A  ++
Sbjct: 522 -QPRALA----GRRVAMLEGRDLARQALQHQLEDCGLQVSEFTDIDSLCAAVTQAAGSAQ 576

Query: 607 IINMILVEQEVWEKDTSVSTL--FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             +  ++   +   D + + L   + +L +LGC    K  +L  +   +         S+
Sbjct: 577 AFSCAVL--GITSDDLAPAALGKRIWDLEELGC----KSVVLCPTTEQTLYQD-----SV 625

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK--ILIVDDNNVNL 722
           P    +          LQRA+      ++     P  + RH  LGR   IL VDDN  NL
Sbjct: 626 PDWHSQLQAKPACTRRLQRAL-----IDLVAPRQPRQATRH-NLGRSPAILCVDDNAANL 679

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
            +    L   GA V     G  A  ++     FD  FMD+QMP MDG + T+ IR+ EH+
Sbjct: 680 LLVQTLLDDMGAKVTVASSGFDAL-VITQEQDFDLVFMDVQMPGMDGRQTTEAIRQWEHD 738

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
            N R                  +PI+A+TA  +       L+SGMD Y++KP    QL +
Sbjct: 739 -NGRT----------------PMPIVALTAHALANEKRTLLQSGMDDYLTKPISERQLAQ 781

Query: 843 EVSRF 847
            V ++
Sbjct: 782 VVLKW 786


>gi|440682762|ref|YP_007157557.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
 gi|428679881|gb|AFZ58647.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
          Length = 1288

 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 197/612 (32%), Positives = 284/612 (46%), Gaps = 106/612 (17%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K+ AE A++AKS FLAT+SHEIRTPMN ++GM  ML+DT L   Q D V T + S  AL+
Sbjct: 621  KQTAETANMAKSNFLATMSHEIRTPMNAIIGMSGMLLDTSLTSEQLDCVETIRNSSNALL 680

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            ++IN++LD +K+ESGKLELEA  F+LR  +++ L L + ++  KG+EL   I+  VP  +
Sbjct: 681  TIINDILDFSKIESGKLELEAQPFDLRLCVEEALDLLAPQAASKGIELMYLIATDVPIFI 740

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            IGD  R RQI+ NLM N+IKFT+ G + VT+   E V  S   E +  + ++T  G P  
Sbjct: 741  IGDITRLRQILWNLMSNAIKFTKVGEVMVTITAREMVSTSGCYELQF-AVRDTGIGIP-R 798

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
            DR H                                            R+F PF QV  S
Sbjct: 799  DRLH--------------------------------------------RLFKPFSQVDVS 814

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            ++R +GGTG+GL ISK L   M G +   S PN GSTF FT +F   SS  N      ++
Sbjct: 815  MTRRYGGTGLGLVISKRLCEIMGGRMWVDSQPNQGSTFYFTVIFPVDSSAINS----SIS 870

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
              P  ++        L VD   +R  ++   +Q LG++V+VV      L  +        
Sbjct: 871  TDPELLNQRL----LLAVDNINLRQCLT-LRLQSLGLEVQVVESNTAMLQHLEQEKPFAL 925

Query: 610  MIL-VEQEVWEK-DTSVSTLFVNNLRKLG---CGFQSKLFLLANSISSSRANTSTDGVSI 664
             IL ++   W   +       +   R L      ++ K  L    +S+            
Sbjct: 926  AILDIDSPDWNALNLPAKIRDIPKQRDLPLVMLSYKGKQTLEVKQVSA----------EF 975

Query: 665  PSVIMKPLRSSMLAASLQRAMG---------------VGNKGNIRNWELPSMSLR-HLLL 708
             + + KP+R   L  +L   +                + +   +   +LP++  +    L
Sbjct: 976  TAFLYKPVRQYQLYHTLLHIIQGSWFTKVIKDSTDSIIPSYSRLSKPDLPTIDTKLSKSL 1035

Query: 709  GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768
              KIL+V+D  +N K+A   L R G        G +A E L     +D  FMDIQMPEMD
Sbjct: 1036 PLKILLVEDVLINQKIALQMLNRLGYRADVANDGHEALEALQ-RQLYDVVFMDIQMPEMD 1094

Query: 769  GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
            G+E T  IR    +F+                 +    I+AMTA       +ECL  GM+
Sbjct: 1095 GWETTLRIRS---DFSQ----------------DAQPWIIAMTAHARPEDRQECLSIGMN 1135

Query: 829  GYVSKPFEAEQL 840
             Y+SKP   E L
Sbjct: 1136 DYISKPISLEGL 1147


>gi|254230528|ref|ZP_04923899.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25]
 gi|262393275|ref|YP_003285129.1| BarA sensory histidine kinase [Vibrio sp. Ex25]
 gi|451972093|ref|ZP_21925305.1| signal transduction histidine-protein kinase BarA [Vibrio
           alginolyticus E0666]
 gi|151936953|gb|EDN55840.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25]
 gi|262336869|gb|ACY50664.1| BarA sensory histidine kinase [Vibrio sp. Ex25]
 gi|451931931|gb|EMD79613.1| signal transduction histidine-protein kinase BarA [Vibrio
           alginolyticus E0666]
          Length = 932

 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 180/605 (29%), Positives = 291/605 (48%), Gaps = 104/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY++T + S   L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDYLQTIEKSANNLL 340

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+E+GKL LE + F+ R  L++V++L +  + +KG+E+ + +  ++P  L
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +QI+TNL+GNSIKFTE+G+I V+V +  +  DS+E++                
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQSGDSVELQ---------------- 444

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                             V DTG GI    Q+++F  F Q   S
Sbjct: 445 --------------------------------FMVRDTGIGISERQQAQLFQAFSQADAS 472

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT    +     +E    ++ 
Sbjct: 473 ISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTVRLHSTEMPMSELIEVEL- 531

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
                      G + L+++P    A V++  + + GI V   S        +    +  +
Sbjct: 532 ---------LTGKQLLLIEPNMQAASVTQQILSQEGILVTYRSS-------LPKNEEQYD 575

Query: 610 MILVEQEVWE-KDTSVSTLFVNNLRKLG----CGFQSKLFLLANSISSSRANTSTDGVSI 664
            +L+     +  D  V T ++   +++      G  S    LA+ I +            
Sbjct: 576 YVLLNLAANQTHDADVITPWIEQAKRMAPSVILGTPSTELALADQIMTEHH--------- 626

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
              + KPL    L  SL  +  V +   +     PS   R   L   +L VDDN  NLK+
Sbjct: 627 VQCLTKPLSRRKLLQSL-ISEHVESPPTLSAPITPSEGER---LPLTVLAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
            +A L+     V     G++A   L    ++D  FMDIQMP+MDG  A + I+E+E N +
Sbjct: 683 ISALLRERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPQMDGVTACQHIKELELNKD 741

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    +  L +GMD Y++KP E   L + +
Sbjct: 742 T--------------------PVIAVTAHAMAGERDRLLSAGMDDYLTKPIEEHVLQQVL 781

Query: 845 SRFFP 849
             + P
Sbjct: 782 VHWNP 786


>gi|365101447|ref|ZP_09332077.1| signal transduction histidine-protein kinase BarA [Citrobacter
           freundii 4_7_47CFAA]
 gi|363646997|gb|EHL86226.1| signal transduction histidine-protein kinase BarA [Citrobacter
           freundii 4_7_47CFAA]
          Length = 918

 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 178/605 (29%), Positives = 288/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTEGGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521

Query: 550 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN     S +    G +   V+P    A+ +   +    ++V + S     L +    
Sbjct: 522 --PNVLVDRSTTLCLAGKRLAYVEPNATAAQCTLDILSETPLEV-IYSPSFSGLPKDHYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             ++ + +  +E          L + + R       +   LLA    +            
Sbjct: 579 ILLLGIPVTLRE---------PLTMQHERLASAAAMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +  +        + +    +   ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHSAD-------PLLVDESKIAMTVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     VV  + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 683 IGALLEDKVQHVVLCDSGHQAVD-RARQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 738

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E ++L+  +
Sbjct: 739 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEDKLHNLL 781

Query: 845 SRFFP 849
            R+ P
Sbjct: 782 LRYKP 786


>gi|296104455|ref|YP_003614601.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058914|gb|ADF63652.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 919

 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 188/621 (30%), Positives = 293/621 (47%), Gaps = 138/621 (22%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + +EL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRAISNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         V  +G  T   
Sbjct: 475 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWFHINLDLNPNVLTDGPVTDCL 534

Query: 543 HNSQQMNNQPNSVSSEFQGMKALVVDPRPI-------RAKVSRYHIQRLGIQVEVVSDQL 595
              +    +PN+ +++   +  L   P  +          V  Y I  +GI V    +  
Sbjct: 535 KGKRLAYVEPNAAAAQCT-LDILSTTPLEVVYSPTFSALTVEHYDILLMGIPVTFTGE-- 591

Query: 596 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 655
                          + ++QE   K  S++      L  L C  Q     L N       
Sbjct: 592 ---------------LTMQQERLAKAASMTDYL---LLALPCHAQINAEELKN------- 626

Query: 656 NTSTDGVSIPSVIMKPLRSSMLAASL-------QRAMGVGNKGNIRNWELPSMSLRHLLL 708
               DG +  + ++KPL ++ L  +L       + A+ + N        LP MS      
Sbjct: 627 ----DGAA--ACLLKPLTATRLLPALTAYCRLNEHAVALIND----EQRLP-MS------ 669

Query: 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768
              ++ VDDN  NLK+    L+     V     G +A E L    QFD   MDIQMP MD
Sbjct: 670 ---VMAVDDNPANLKLIGVLLEDQVQHVELCTSGAEAVE-LAKQMQFDLILMDIQMPGMD 725

Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
           G  A ++IR++ H                        P++A+TA  +    E+ L +GM+
Sbjct: 726 GIRACELIRQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMN 765

Query: 829 GYVSKPFEAEQLYREVSRFFP 849
            Y++KP + E+L+  + R+ P
Sbjct: 766 DYLAKPIDEEKLHNLLLRYKP 786


>gi|381158911|ref|ZP_09868144.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
 gi|380880269|gb|EIC22360.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
          Length = 1026

 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 183/613 (29%), Positives = 289/613 (47%), Gaps = 95/613 (15%)

Query: 249  LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 308
            L +KA AA++AKS+FLA +SHEIRTP+N ++G+ D+L +  LD  Q+ Y  T + + ++L
Sbjct: 492  LAEKASAANLAKSEFLANMSHEIRTPLNAIIGITDLLSEAGLDEEQRQYAETLRGASRSL 551

Query: 309  VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 368
            ++LIN++LD +K+E G+L LE ++F L  ++++V+++ + +++ KG+E  V +  R+P  
Sbjct: 552  LALINDILDFSKIEKGRLTLECIAFGLDPLIEEVVTVAAVQAEAKGLEFLVDVDQRIPAW 611

Query: 369  LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 428
            L+GD  R RQ++ NL+GN++KFT  G + + V L++   + + VE               
Sbjct: 612  LLGDSLRLRQVLINLLGNAVKFTSSGDVTLAVELIQAKAERVVVE--------------- 656

Query: 429  ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 488
                                              SV DTG GI  + Q  +F  F Q   
Sbjct: 657  ---------------------------------FSVRDTGIGIAPDRQQALFDAFTQADS 683

Query: 489  SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 548
            S +R  GGTG+GLSI+  LV  M G +   S P  GS F FT      +   +  +S Q 
Sbjct: 684  STTRKFGGTGLGLSIAAELVTLMGGSLRVDSQPEAGSRFYFTLHLDLPNPAESPQDSLQT 743

Query: 549  NNQPNSVSSEFQGMKALVV-DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA-SGSK 606
                        G +ALVV D +P+R  + R H++ LG++V+  +D     S +A  G  
Sbjct: 744  ----------LAGRRALVVADYQPLRELLPR-HLRALGLRVQAAADVGGAASLLAKDGPT 792

Query: 607  IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
             + MI      +    S     +  LR+      +++ L+A+S     A          +
Sbjct: 793  DLAMI-----DYHFPGSEPREQIQALRERATPGATRILLMASSRDFGEAVALRTAGLADT 847

Query: 667  VIMKPLRSSMLAASLQR-AMGVGNKG-------NIRNWELPSMSLRHLLLGRK---ILIV 715
            VI KPL    L  +L     GV             R+    S  + +   G K   IL+ 
Sbjct: 848  VISKPLTRGALRRTLSDFVQGVSKDAGQDTQTQGSRDQSRASGGIGNAAGGIKDACILVA 907

Query: 716  DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI 775
            DD   N  V    L + G  V+    G++A E+L   H  D   MD++MPEM+G +AT+ 
Sbjct: 908  DDEPTNQIVLKKILAKLGHRVLVAANGREALEVL-SQHPCDLVLMDVRMPEMNGHQATRA 966

Query: 776  IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
            IR                  A     N  +PI+A+TA+ +    E  L SGMD +++KP 
Sbjct: 967  IR-----------------AADSTALNPKIPIIALTAEAVTGERESALASGMDDFLTKPI 1009

Query: 836  EAEQLYREVSRFF 848
            E   L   + R+ 
Sbjct: 1010 EISALNEAIQRWL 1022


>gi|157148322|ref|YP_001455641.1| hybrid sensory histidine kinase BarA [Citrobacter koseri ATCC
           BAA-895]
 gi|157085527|gb|ABV15205.1| hypothetical protein CKO_04139 [Citrobacter koseri ATCC BAA-895]
          Length = 918

 Score =  243 bits (621), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 188/620 (30%), Positives = 295/620 (47%), Gaps = 136/620 (21%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V   +  + + +V+ E+   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEI-QIRDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             PN +S           D  P R  V +    RL   VE  +   QC   + S + +  
Sbjct: 522 --PNVIS-----------DAPPTRCLVGK----RLAY-VEPNATAAQCTLDMLSDTPL-- 561

Query: 610 MILVEQEVWEKDTSVSTLFVNN----LRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
                 EV    T  S L +++    L  +   F   L +    ++ + A T    +++P
Sbjct: 562 ------EVIYSPT-FSALPLDHYDILLISVPVTFNEPLTMQQERLAKAAAMTDFLLLALP 614

Query: 666 ----------------SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG 709
                           + ++KPL S+ L  +L     +       N  +  +      + 
Sbjct: 615 CHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCHL-------NQHVEPLLTDENKIA 667

Query: 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
             ++ VDDN  NLK+  A L+     V   + G +A E      QFD   MDIQMP+MDG
Sbjct: 668 MTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVE-RAKQMQFDLILMDIQMPDMDG 726

Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
             A ++I ++ H                        P++A+TA  +    E+ L +GM+ 
Sbjct: 727 IRACELIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLSAGMND 766

Query: 830 YVSKPFEAEQLYREVSRFFP 849
           Y++KP E E+L+  + R+ P
Sbjct: 767 YLAKPIEEEKLHSLLLRYKP 786


>gi|392383663|ref|YP_005032860.1| putative histidine kinase [Azospirillum brasilense Sp245]
 gi|356878628|emb|CCC99515.1| putative histidine kinase [Azospirillum brasilense Sp245]
          Length = 991

 Score =  243 bits (621), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 191/631 (30%), Positives = 298/631 (47%), Gaps = 100/631 (15%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           M + K++AE    AKS FLAT+SHEIRTPMNGVLGML++L  T LD  Q+D V T + S 
Sbjct: 303 MEQAKEQAEQTTTAKSAFLATMSHEIRTPMNGVLGMLELLERTPLDSGQRDTVATMRESA 362

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            +L+ +I+++LD +K+E+GK++LE V  ++ A+++ V    +  ++ KG+ L  Y+   +
Sbjct: 363 TSLLRIIDDILDFSKIEAGKMDLEQVPVSIPALVEGVAETLAPAARAKGLTLLTYVDPAI 422

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
           P  L GDP R RQI+ NL GN+IKFTE+G I V   L           T+ SS   T   
Sbjct: 423 PPALTGDPVRLRQILFNLCGNAIKFTERGRIVVQATLA--------ARTDGSSQGGT--- 471

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                             L + V DTG GI   A+  +F PF+Q
Sbjct: 472 ---------------------------------RLRIEVADTGIGISETARRLLFQPFIQ 498

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
              S +R  GGTG+GLSIS+ LV  M G IG  S P  GSTF         + T+     
Sbjct: 499 AESSTARRFGGTGLGLSISRRLVALMGGTIGVDSAPGAGSTFWVELTLSAAADTAPPEPP 558

Query: 546 QQMN--NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV------EVVSDQLQC 597
                 ++P+       G+  LV  P     ++  ++++  G +V      + +++Q + 
Sbjct: 559 PGPPAVDEPD-----LSGLTVLVGLPDTEERRIVAHYLEAAGARVLAAGRPDALAEQAR- 612

Query: 598 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 657
           ++Q   G+  +N+++V++ +     + +   +   R++G      + L   +    R   
Sbjct: 613 MAQTERGA--LNVVVVDEALHTPAAAQAPQLLG--RRVGEAQVPTVLLQDPTAIGGRL-- 666

Query: 658 STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS--------MSLRHLLL- 708
             DG ++P  + +P+R + L  ++ RA G          + P         +S   ++  
Sbjct: 667 -ADG-AVP--VSRPVRRTPLVRAVARAAGRALTDATPGEDPPPAVRCAPAVLSPERVIAE 722

Query: 709 ----GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 764
               GR IL+ +DN +N KV    L   G        G +A   L    ++     DIQM
Sbjct: 723 AEARGRLILVAEDNAINRKVLQMQLTSLGHTAELTNGGAEALAALG-RRRYALLLTDIQM 781

Query: 765 PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 824
           PE+DGFE T+ IR                  A E  +  H+PI+A+TA+   A  E    
Sbjct: 782 PEVDGFELTRRIR------------------AAERATGAHLPIVALTANAAPADIESYRA 823

Query: 825 SGMDGYVSKPFEAEQLYREVSRFFPPIPDRS 855
           +GMD  +SKP +  +L   +SRF PP  D +
Sbjct: 824 AGMDEALSKPLDLAKLDAALSRFLPPAVDEA 854


>gi|402839446|ref|ZP_10887933.1| signal transduction histidine kinase domain protein [Klebsiella sp.
           OBRC7]
 gi|402287720|gb|EJU36150.1| signal transduction histidine kinase domain protein [Klebsiella sp.
           OBRC7]
          Length = 917

 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 190/606 (31%), Positives = 294/606 (48%), Gaps = 109/606 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNTTQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS---IEVETELSSSKNTLSGY 426
           IGDP R +QIITNLMGN+IKFTE G+I V   LVE+   S   +++E ++    +T  G 
Sbjct: 403 IGDPLRLQQIITNLMGNAIKFTEHGNIDV---LVEQRAISNSRVQIEVQI---HDTGIGI 456

Query: 427 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 486
           P  D+   ++ F+                                             Q 
Sbjct: 457 PERDQSRLFQAFR---------------------------------------------QA 471

Query: 487 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 546
             SISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S 
Sbjct: 472 DASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISL 518

Query: 547 QMNNQ--PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 603
            +N    P+SV ++   G K   ++     A+ +   +    ++V V S  +  L     
Sbjct: 519 DLNPNAVPDSVPTQCLAGKKLAYIEANAAAAQCTMELLATTPLEV-VYSPTMTALPDAH- 576

Query: 604 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
                +++L    V  +D S     +    KL       +  L      S      DG++
Sbjct: 577 ----YDILLAGIPVSIRDLSQHRDKLERASKLADHL---VLALPCHAQVSAETLRQDGIA 629

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 723
             + ++KPL S+ L  +L  +         +   LP  S     L   ++ VDDN  NLK
Sbjct: 630 --ACLLKPLTSTRLLPALTASC------QTQPTVLPPRS-DSKKLPMTVMAVDDNPANLK 680

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           +  A L+     V+  + G+ A E      Q D   MDIQMPEMDG  A ++I ++ H  
Sbjct: 681 LIGALLEDLVQHVILCDSGQHAVERARETQQ-DLILMDIQMPEMDGIRACELIHQLPHQQ 739

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
                                 P++A+TA  ++   E+ L +GM+ Y++KP E ++LY  
Sbjct: 740 QT--------------------PVIAVTAHALEGQREKLLSAGMNDYLAKPIEEDKLYSL 779

Query: 844 VSRFFP 849
           + R+ P
Sbjct: 780 LLRYQP 785


>gi|349587786|pdb|3T4J|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
           With N- Isopentenyl Adenine
 gi|349587787|pdb|3T4J|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
           With N- Isopentenyl Adenine
 gi|349587788|pdb|3T4K|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
           With N- Benzyladenine
 gi|349587789|pdb|3T4K|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
           With N- Benzyladenine
 gi|349587790|pdb|3T4L|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
           With Trans- Zeatin
 gi|349587791|pdb|3T4L|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
           With Trans- Zeatin
 gi|349587792|pdb|3T4O|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
           With Dihydrozeatin
 gi|349587793|pdb|3T4O|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
           With Dihydrozeatin
 gi|349587794|pdb|3T4Q|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
           With Trans- Zeatin Riboside (Hydrolysed)
 gi|349587795|pdb|3T4Q|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
           With Trans- Zeatin Riboside (Hydrolysed)
 gi|349587796|pdb|3T4S|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
           With Kinetin
 gi|349587797|pdb|3T4S|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
           With Kinetin
 gi|349587798|pdb|3T4T|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
           With Thiadiazuron
 gi|349587799|pdb|3T4T|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
           With Thiadiazuron
          Length = 270

 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 120/198 (60%), Positives = 146/198 (73%), Gaps = 10/198 (5%)

Query: 10  RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
           +V+  ERE FE+Q  W IK MD        + EPSP+ +EYAPVIF+QD+VS++ SLDM+
Sbjct: 81  KVVNFEREMFERQHNWVIKTMD--------RGEPSPVRDEYAPVIFSQDSVSYLESLDMM 132

Query: 70  SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
           SG+EDREN+LRAR +GK VLT+PFRLL+T+ LGV+LTF VYK  LP N T  ERI AT G
Sbjct: 133 SGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAG 192

Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSN--VSDDGLWLVSTLN 187
           YLGG FD+ESLVE LL QLA  Q I V+VYDITN S P+ MYG+    +D  L   S L+
Sbjct: 193 YLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLD 252

Query: 188 FGDPFRKHEMRCRFKQKA 205
           FGDPFRKH+M CR+ QKA
Sbjct: 253 FGDPFRKHKMICRYHQKA 270


>gi|392380729|ref|YP_005029925.1| putative Sensor protein [Azospirillum brasilense Sp245]
 gi|356875693|emb|CCC96441.1| putative Sensor protein [Azospirillum brasilense Sp245]
          Length = 1147

 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 199/632 (31%), Positives = 301/632 (47%), Gaps = 101/632 (15%)

Query: 232 TVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 291
           T +R+A+ +     +   K++AE A  AKS+FL T+SHEIRTPMNGVLGML +L+D  L 
Sbjct: 445 TAHRLAEAQ-----LRLAKEQAELASRAKSEFLRTISHEIRTPMNGVLGMLGLLLDGPLG 499

Query: 292 VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 351
             Q+ Y RTA+ S +AL+ ++N++LD +K+E+GKL LE+  F+   +++ V+ L + ++ 
Sbjct: 500 DEQRAYARTARESAEALLFMLNDILDISKMEAGKLTLESGRFSPAEVVESVVELQAARAF 559

Query: 352 DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 411
            KG+ELAV I+  +P  L GD GR RQ++ NL+GN++KFT++G + VT            
Sbjct: 560 AKGIELAVCITGGLPAALRGDSGRVRQVLLNLVGNAVKFTDRGGVAVT------------ 607

Query: 412 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 471
                                         + DG   P          L   V DTG GI
Sbjct: 608 --------------------------LSKLDGDGQMPP---------RLRFEVTDTGIGI 632

Query: 472 PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 531
           P +AQ+ +FT F QV P +SR H G G+GL+ISK LV  M G IGF S P+ GS F FT 
Sbjct: 633 PRDAQADLFTEFSQVHPRLSRRHDGAGLGLAISKRLVEMMGGSIGFDSTPDQGSRFWFTL 692

Query: 532 VFGNGSSTSNEHNS---QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 588
              +G   S    S   +    +         G   L+++  P+  +     +   G  V
Sbjct: 693 PLQSGPLQSGPPESGLVEPRRTRAAVAEPPLAGETVLLLESNPVARRALAEQLHSWGATV 752

Query: 589 EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 648
               D +  ++ + +G+     I V   V   +T V+    + LR  G     +L L   
Sbjct: 753 S-APDVVAMVAGLDAGTLPAAGIAVIGNV---ETPVAGSLTDRLRARGVQRIVRLAL--- 805

Query: 649 SISSSRANTSTDGVSIPSVIMKPLRSS-MLAASLQRAM-------GVGNKGNIRNWELPS 700
                      DG    + + KP R S +LAA   R++              +++   PS
Sbjct: 806 ----PHRTAGGDGNGADATVTKPARPSRLLAAVTGRSVAEAPPAAPPAAPSPVQSHAAPS 861

Query: 701 MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP----PHQFD 756
            +      G++IL+V+D+  N  VAA  L+  G  V     G++A E +      P  + 
Sbjct: 862 AA----GTGQRILLVEDSPTNQMVAALLLRGAGYRVDIANNGREALEAMAAAAAGPSPYG 917

Query: 757 ACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 816
              MD+ MPEMDG  AT+ +R +                         VPI+AMTAD + 
Sbjct: 918 LVLMDLAMPEMDGLTATRRLRALPPPAGT-------------------VPIIAMTADAMD 958

Query: 817 ATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
           +  E CL +GM+G+V+KP +   L   V+R+ 
Sbjct: 959 SDRERCLAAGMNGHVAKPIDRPHLLETVARWL 990


>gi|285018741|ref|YP_003376452.1| two-component system sensor-response regulator hybrid protein
            [Xanthomonas albilineans GPE PC73]
 gi|283473959|emb|CBA16460.1| putative two-component system sensor-response regulator hybrid
            protein [Xanthomonas albilineans GPE PC73]
          Length = 1370

 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 178/606 (29%), Positives = 288/606 (47%), Gaps = 98/606 (16%)

Query: 253  AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312
            AE A+ +KS FLA +SHEIRTPMN +LGML +L ++EL    +D ++    S +AL+ +I
Sbjct: 631  AETANQSKSDFLANMSHEIRTPMNAILGMLYLLQNSELPQAAKDMIQKTDISARALLDII 690

Query: 313  NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 372
            N++LD +K+ESG+++LE+  F+L  +L+++ +L +     K VE+ V    +    L GD
Sbjct: 691  NDILDFSKIESGRIDLESEPFDLSQLLENIATLMTTAISAKPVEMIVEPLPKGCRWLRGD 750

Query: 373  PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 432
              R  Q++ NL+GN+IKFTE+G + ++V                                
Sbjct: 751  ALRLNQVLVNLVGNAIKFTEQGEVTLSV-------------------------------- 778

Query: 433  HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492
                             F S     I L+ SV DTG GIP E QS IF+PF+Q   S SR
Sbjct: 779  ---------------RAFPSPEVGKIKLMFSVRDTGIGIPREKQSLIFSPFLQADTSTSR 823

Query: 493  THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 552
             +GG+G+GL+IS+ LV  M G++   S PN GS F F   F              M   P
Sbjct: 824  RYGGSGLGLTISRRLVELMGGQLEVQSTPNRGSDFYFAITFA-------------MLPAP 870

Query: 553  NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS-KIINMI 611
             +     +  + L+ D   +  +     +   G QVE V++    L+  A+   +  +++
Sbjct: 871  TAEPELSEPPRVLIADDHELARRNLTTIVSGFGWQVEAVANGTDALAAAATPEHEDFDVL 930

Query: 612  LVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG---VSIPSVI 668
            L++   W           + +R      +  + ++ ++           G   V + +++
Sbjct: 931  LLD---WRMPDLDGFSVAHRIRAQTTSDRQPIIVMVSAYERRLLEERNQGAIDVDVDALM 987

Query: 669  MKPLRSSML----AASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
             KP+ +  L    A  L R  G G    +        +LR  L G ++L+VDD+ +N +V
Sbjct: 988  TKPVTAPTLYRTIATLLARRRGEGPTPLLCG----DSTLR--LAGAQLLVVDDSQINCEV 1041

Query: 725  AAAGLKRYGAAVVCVERGKKATE-LLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
            A   L+  GA V     G++A + L   P +F    MD+QMP MDG+EAT+ +       
Sbjct: 1042 AQRILEGEGAIVELAHDGEQALQRLRQEPSRFQVILMDVQMPNMDGYEATRQL------- 1094

Query: 784  NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
                 R +  + A        +P++A+TA   +   E  L SGM+G+++KPF+ E L   
Sbjct: 1095 -----RADPRLAA--------LPVIALTAGAYRQQQELALSSGMNGFIAKPFQVENLIAI 1141

Query: 844  VSRFFP 849
            + +F P
Sbjct: 1142 IRQFLP 1147


>gi|170727693|ref|YP_001761719.1| hybrid sensory histidine kinase BarA [Shewanella woodyi ATCC 51908]
 gi|169813040|gb|ACA87624.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 937

 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 183/605 (30%), Positives = 279/605 (46%), Gaps = 103/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A  A   KS+FLA +SHE+RTP+NGV+G    L+ T L  +QQDY+ T + S   L+
Sbjct: 292 KKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHTSQQDYINTIEKSATNLL 351

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +IN++LD +K+E+GKL LE++ F LR ++ D +++ S  +++K +EL + I   VPE L
Sbjct: 352 EIINDILDFSKLEAGKLVLESLPFALRELVGDTVTILSNSAREKDIELVIDIDQSVPEAL 411

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R  QI+TNL+GN+IKFT+ G + +++ L +   D + +                 
Sbjct: 412 CGDPMRIGQILTNLIGNAIKFTDSGSVHLSLKLTDGSKDKVNI----------------- 454

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
            RC                               + DTG GI  + Q  +F  F Q   S
Sbjct: 455 -RCE------------------------------ITDTGIGIDPQQQEILFQAFGQADSS 483

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH-NSQQM 548
           ISR  GGTG+GL I+K LV RM G+IG  S  N GSTF FT               ++++
Sbjct: 484 ISRRFGGTGLGLIITKRLVNRMGGQIGCNSKANEGSTFWFTLPLETSQYPVGHFLTTEKL 543

Query: 549 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII 608
            N+             L+++PR +  K      Q  G++   +    Q        SK  
Sbjct: 544 LNK-----------SMLLIEPRELSNKTLLKQFQYWGMKTTNIGSTSQLAECSLPDSKKY 592

Query: 609 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 668
           +  +V  +    D   +      L+ +    Q  L+L    + ++  +T T   ++  ++
Sbjct: 593 DYAVVSCKALNPDKDTT----EQLKSIKDLSQFVLYL----VCTNEQDTHTIFDTVDKIL 644

Query: 669 MKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL------GRKILIVDDNNVNL 722
             P+   +LA  L     +  K +  +   P     H  +         +L VDDN  NL
Sbjct: 645 PAPINEKVLAEIL-----IDPKSDTSS---PHQLEEHAQVEPIARENLNVLAVDDNPANL 696

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
           K+    LK   + V  V+ G+ A   +     FD  FMDIQMP  DG  ATK IR  +H+
Sbjct: 697 KLIDTLLKELVSQVTVVDNGQGAVN-IAQERSFDLIFMDIQMPGTDGISATKQIR--QHS 753

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
            N                   + PI+A+TA  I    E   +SGMDGY+ KP +   L  
Sbjct: 754 LNR------------------NTPIIAVTAHAIAEEREMIQQSGMDGYLPKPIDEAALKS 795

Query: 843 EVSRF 847
            ++R+
Sbjct: 796 VINRW 800


>gi|149191684|ref|ZP_01869926.1| putative histidine kinase [Vibrio shilonii AK1]
 gi|148834473|gb|EDL51468.1| putative histidine kinase [Vibrio shilonii AK1]
          Length = 1039

 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 194/637 (30%), Positives = 291/637 (45%), Gaps = 128/637 (20%)

Query: 229 FQATVNRIA-KVEEDYHGMMELKKKAE-------AADVAKSQFLATVSHEIRTPMNGVLG 280
           F   V R+  + +E    ++E K  AE        A  AKS FLA +SHEIRTP+NGV+G
Sbjct: 343 FAREVERLTNEQQESQRNLLEAKNAAEHAKENAIEASKAKSSFLANMSHEIRTPLNGVIG 402

Query: 281 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
           + ++L DT+L  TQ+DYV T + S + L+SLIN++LD +K+ESG L++   S ++R  + 
Sbjct: 403 ISEVLSDTDLTATQKDYVDTIETSSQLLLSLINDILDFSKIESGMLQINPHSTSIRETIY 462

Query: 341 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
           D+ S+ + K ++KG+EL V I   VP  ++ D  R RQ++ N M N++KFT+KG + + V
Sbjct: 463 DIASIVAPKVKEKGIELNVDIDQNVPFRVLADDHRMRQVLMNFMSNAVKFTDKGSVTIGV 522

Query: 401 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 460
           +                                                ++  S ++ +L
Sbjct: 523 H------------------------------------------------YQGESNNMASL 534

Query: 461 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520
           +  V+D+G GI  E QS+IF  F Q   S +R  GGTG+GL+IS  L+  M GEI   S+
Sbjct: 535 MFEVQDSGIGIDKERQSKIFEAFAQEDDSTTRQFGGTGLGLAISTQLIELMGGEIQLDSV 594

Query: 521 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 580
             +GS F FT                           E+Q    L+ D   I    S Y 
Sbjct: 595 KGVGSRFYFTLELAID-------------------EKEYQHRSPLLFDELVIVCDASAYE 635

Query: 581 IQRLGIQVEVVSDQLQCLSQIASGSKIIN------MILVEQEVWEKD---TSVSTLFVNN 631
            +RL  +++     +  + +    + ++N      +I VE      D   T  + +  N 
Sbjct: 636 -RRLRTELDFYQLNIARVCRSIQEADLLNPQKKTLLIYVEGGDVSSDKDETRFAEIQAN- 693

Query: 632 LRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG 691
            R   C        L     SS  +    G +I ++I  PL  + L  SL+      +KG
Sbjct: 694 -RTAIC--------LIRQFESSNKDF---GNNICALITYPLLGNRLLKSLEACCRTLDKG 741

Query: 692 ----NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATE 747
               NI  +    +         K+L+V+DN VN KVA+  L + G        G +A E
Sbjct: 742 LATPNIDTYATKRV---------KVLLVEDNIVNQKVASLHLNKMGLEYDVANNGVEAIE 792

Query: 748 LLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPI 807
                  +    MD  MP MDGFEAT+ IR  E   NN + R                PI
Sbjct: 793 HYKKDTSYAFILMDCMMPIMDGFEATEKIRSYES--NNHLPR---------------TPI 835

Query: 808 LAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
           +A+TA V+    ++C  SGMD YV KPF+AE L  ++
Sbjct: 836 IALTASVVDDDIQKCFDSGMDDYVPKPFKAEILKEKI 872



 Score = 96.3 bits (238), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 143/333 (42%), Gaps = 75/333 (22%)

Query: 552  PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMI 611
            PN  +   + +K L+V+   +  KV+  H+ ++G++ +V ++ ++ +             
Sbjct: 745  PNIDTYATKRVKVLLVEDNIVNQKVASLHLNKMGLEYDVANNGVEAI------------- 791

Query: 612  LVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK----------------LFLLANSISSSRA 655
                E ++KDTS + + ++ +  +  GF++                 +  L  S+     
Sbjct: 792  ----EHYKKDTSYAFILMDCMMPIMDGFEATEKIRSYESNNHLPRTPIIALTASVVDDDI 847

Query: 656  NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV----------GNKGNIRNW--------E 697
                D   +   + KP ++ +L   +  A+ +           NK +I           E
Sbjct: 848  QKCFDS-GMDDYVPKPFKAEILKEKIVSAIELKGAVDSPIVLDNKISIEQTPKSNPGPEE 906

Query: 698  LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 757
              S+S  H     ++L+V+DN VN KVA+  LK+ G   V    G++A EL +   +FD 
Sbjct: 907  TQSVSDAHS--SGRVLLVEDNLVNQKVASLHLKKAGFDYVIAADGQEALELFISQGKFDV 964

Query: 758  CFMDIQMPEMDGFEATKIIR--EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815
              MD  MP  DGF AT+ IR  E EH  N                     PI+A+TA V+
Sbjct: 965  ILMDCMMPIKDGFHATQDIRSYEKEHGLN-------------------PTPIIALTASVV 1005

Query: 816  QATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
                ++C  +GMD YV KP   E+L  E++ + 
Sbjct: 1006 DDDIQKCFDAGMDAYVPKPVRREKLLHEMNNYL 1038


>gi|192359994|ref|YP_001980883.1| MmoS protein [Cellvibrio japonicus Ueda107]
 gi|190686159|gb|ACE83837.1| MmoS [Cellvibrio japonicus Ueda107]
          Length = 803

 Score =  243 bits (620), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 182/595 (30%), Positives = 276/595 (46%), Gaps = 80/595 (13%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K  AE A  AKSQFLAT+SHEIRTPMNGV+GMLDML DT LD  Q+ Y+     SG+ L+
Sbjct: 268 KNAAEDASRAKSQFLATMSHEIRTPMNGVIGMLDMLRDTPLDENQKHYIDVIHRSGETLL 327

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN++LD +K+E+GK++LE + F L  ++++ + LF   +  + +EL   ++  VP  L
Sbjct: 328 SIINDILDYSKIEAGKMQLEEMVFELDDLVENCIQLFGATANKRNIELFGGLNPDVPRRL 387

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R RQII NL+GN+ KFTE+G + + V L     D+  ++ E              
Sbjct: 388 RGDPTRLRQIIINLLGNAFKFTEEGFVSLEVGL-----DNTALQAE-------------- 428

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                       + L   V+D+G GI   + S +F  F Q   S
Sbjct: 429 --------------------------GRLMLRFVVQDSGIGIDPNSASNLFDSFNQADAS 462

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R +GGTG+GL+I K L   M G IG  S    G+ F FTA F          + Q++ 
Sbjct: 463 TTRKYGGTGLGLAICKSLAELMGGRIGVKSAKGEGAQFWFTAQF----------DVQELA 512

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
           +   +     +G + L+V+        ++ +    G+ +E      Q ++ +  G     
Sbjct: 513 SPSLTPDPTLKGKRLLMVETSAPLVTFTQRYCDHWGLLLETAFSAKQAVALLKHGLHAGE 572

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
                   +    +        LR      +  +F+ +              ++I +V+ 
Sbjct: 573 PFDFVAFDYSLPDATGFELAQWLRDAPDFTELPVFMFSGG-DVYHDQAVMQRLAIHTVLR 631

Query: 670 KPLRSSMLAASLQRAMGVGNKGNIRNWE--LPSMSLRHLLLGRKILIVDDNNVNLKVAAA 727
           KP+    L   L   +G      +   E  L      HL    ++L+ +DN VN  V   
Sbjct: 632 KPISVKALYRELIALLGHEAAPTVLPAEKVLARDKFAHL----QVLVAEDNPVNRMVIKG 687

Query: 728 GLKRYGAAVVCVERGKKATELLMPPHQ-FDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
            L + G   V  E G++A +L+    Q FD   MD +MPEMDGFEAT+ IRE+E      
Sbjct: 688 LLGKLGIQPVFAENGREAVDLVHHGAQRFDLILMDCEMPEMDGFEATRNIRELER----- 742

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
            R G  +           VP++A+TA  +Q   E    SGM+ Y++KP   + LY
Sbjct: 743 -RSGRPA-----------VPVVALTAHALQEHREAVFASGMNYYLAKPITFDSLY 785


>gi|86608001|ref|YP_476763.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
 gi|86556543|gb|ABD01500.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
          Length = 1526

 Score =  243 bits (620), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 179/600 (29%), Positives = 281/600 (46%), Gaps = 104/600 (17%)

Query: 261  SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 320
            S FLAT+SHEIRTPMN VLGM  +L++T L+  Q+D+V T + SG AL++LIN++LD +K
Sbjct: 850  SSFLATMSHEIRTPMNAVLGMTGLLLETPLNAEQRDFVETIRISGDALLTLINDILDFSK 909

Query: 321  VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 380
            +E+G++ELE + F+LR+ L++V  LF+  +  KG+ELAV +   VP  L GD  R RQI+
Sbjct: 910  LEAGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLMPPEVPRYLRGDASRLRQIL 969

Query: 381  TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 440
             NL+ N+IKFT +G + +   +++E      ++    S ++T  G P A +    K F+ 
Sbjct: 970  NNLVSNAIKFTHQGEVVIQAEVLQETATHAHLKL---SVRDTGIGIPAAAQS---KLFQP 1023

Query: 441  FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 500
            F+                                          QV  S +R +GGTG+G
Sbjct: 1024 FS------------------------------------------QVDASTTRKYGGTGLG 1041

Query: 501  LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 560
            L+I K L   M G I   S    GSTF+             +   QQ++     +  + Q
Sbjct: 1042 LAICKQLTELMGGTISLQSQEGQGSTFSVELTL------ERQPYVQQLSQPSARIPVDLQ 1095

Query: 561  GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC---LSQIASGSKIINMILVEQEV 617
            G + L VD      K+ R      G+ VE   +  Q    L Q     +   + +++ ++
Sbjct: 1096 GKRLLAVDDNATNRKILRCQATTWGMVVEEAENAYQAMDKLRQAVREGRPFPLAVLDMQM 1155

Query: 618  WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 677
             E D      ++    +L    +++L ++  S+     +     +   + ++KP++ S L
Sbjct: 1156 PEVDGETLGRWIKADPQLA---ETQLVMM-TSLGLGEHSRRAAEIGFAAYLVKPVKQSRL 1211

Query: 678  AASLQRAMGVGNKGNIRNWEL---------------PSMSLRHLLLGRKILIVDDNNVNL 722
              +L   M +G    +    L               P  SLR       IL+ +DN VN 
Sbjct: 1212 QEAL--VMALGKSSGLSTSLLGMSPVLPQTTPREDRPRQSLR-------ILLAEDNPVNQ 1262

Query: 723  KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
            KVA   L+  G     V  G++  +LL     +D   MD QMP MDG+EAT+ +R+ E  
Sbjct: 1263 KVALRQLESLGYKADVVANGQEVLDLLQKVS-YDLILMDCQMPVMDGYEATRRLRQQERR 1321

Query: 783  FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
              +R                    ++A+TA+ +Q   E CL++GMD Y+SKP   E L R
Sbjct: 1322 SGHR------------------TVVIAITANAMQEDRERCLQAGMDDYLSKPVLKEDLQR 1363


>gi|365971880|ref|YP_004953441.1| Signal transduction histidine-protein kinase BarA [Enterobacter
           cloacae EcWSU1]
 gi|365750793|gb|AEW75020.1| Signal transduction histidine-protein kinase BarA [Enterobacter
           cloacae EcWSU1]
          Length = 919

 Score =  243 bits (620), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 184/614 (29%), Positives = 289/614 (47%), Gaps = 124/614 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + +EL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRSISNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         V  +G  T+  
Sbjct: 475 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWFHINLDLNPNVLTDGPVTNCL 534

Query: 543 HNSQQMNNQPNSVSSEFQGMKALVVDPRPI-------RAKVSRYHIQRLGIQVEVVSDQL 595
              +    +PN+ +++   +  L   P  +          V  Y I  LG+ V    +  
Sbjct: 535 KGMRLAYVEPNAAAAQCT-LDILSTTPLEVIYSPTFSALTVEHYDILLLGVPVTFTGE-- 591

Query: 596 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 655
                          + ++QE   K  S++      L  L C  Q     L N       
Sbjct: 592 ---------------LTMQQERLAKAASMTDYL---LLALPCHAQINAEELKN------- 626

Query: 656 NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIV 715
               DG +  + ++KPL ++ L  +L     +          LP +      L   ++ V
Sbjct: 627 ----DGAA--ACLLKPLTATRLLPALTEYCRLSQHA------LPLIDDEQ-KLPMSVMAV 673

Query: 716 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI 775
           DDN  NLK+    L+     V     G +A E      QFD   MDIQMP MDG  A ++
Sbjct: 674 DDNPANLKLIGVLLEDQVQHVELCTSGAQAVE-HAKQMQFDLILMDIQMPGMDGIRACEL 732

Query: 776 IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
           IR++ H                        P++A+TA  +    E+ L +GM+ Y++KP 
Sbjct: 733 IRQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPI 772

Query: 836 EAEQLYREVSRFFP 849
           + E+L+  + R+ P
Sbjct: 773 DEEKLHSLLLRYKP 786


>gi|375257047|ref|YP_005016217.1| hybrid sensory histidine kinase BarA [Klebsiella oxytoca KCTC 1686]
 gi|397659669|ref|YP_006500371.1| BarA sensory histidine kinase [Klebsiella oxytoca E718]
 gi|365906525|gb|AEX01978.1| hybrid sensory histidine kinase BarA [Klebsiella oxytoca KCTC 1686]
 gi|394347803|gb|AFN33924.1| BarA sensory histidine kinase [Klebsiella oxytoca E718]
          Length = 917

 Score =  243 bits (620), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 190/606 (31%), Positives = 294/606 (48%), Gaps = 109/606 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNTTQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS---IEVETELSSSKNTLSGY 426
           IGDP R +QIITNLMGN+IKFTE G+I V   LVE+   S   +++E ++    +T  G 
Sbjct: 403 IGDPLRLQQIITNLMGNAIKFTEHGNIDV---LVEQRAISNSRVQIEVQI---HDTGIGI 456

Query: 427 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 486
           P  D+   ++ F+                                             Q 
Sbjct: 457 PERDQSRLFQAFR---------------------------------------------QA 471

Query: 487 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 546
             SISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S 
Sbjct: 472 DASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISL 518

Query: 547 QMNNQ--PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 603
            +N    P+SV ++   G K   ++     A+ +   +    ++V V S  +  L     
Sbjct: 519 DLNPNAVPDSVPTQCLAGKKLAYIEANAAAAQCTMELLATTPLEV-VYSPTMTALPDAH- 576

Query: 604 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
                +++L    V  +D S     +    KL       +  L      S      DG++
Sbjct: 577 ----YDILLAGIPVSIRDLSQHRDKLERASKLADHL---VLALPCHAQVSAETLRQDGIA 629

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 723
             + ++KPL S+ L  +L  +         +   LP  S     L   ++ VDDN  NLK
Sbjct: 630 --ACLLKPLTSTRLLPALTASC------QTQPTVLPPRS-DSKKLPMTVMAVDDNPANLK 680

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           +  A L+     V+  + G+ A E      Q D   MDIQMPEMDG  A ++I ++ H  
Sbjct: 681 LIGALLEDLVQHVILCDSGQHAVERARETQQ-DLILMDIQMPEMDGIRACELIHQLPHQQ 739

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
                                 P++A+TA  ++   E+ L +GM+ Y++KP E ++LY  
Sbjct: 740 QT--------------------PVIAVTAHALEGQREKLLSAGMNDYLAKPIEEDKLYSL 779

Query: 844 VSRFFP 849
           + R+ P
Sbjct: 780 LLRYKP 785


>gi|127512132|ref|YP_001093329.1| hybrid sensory histidine kinase BarA [Shewanella loihica PV-4]
 gi|126637427|gb|ABO23070.1| Hpt sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 933

 Score =  243 bits (619), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 190/608 (31%), Positives = 285/608 (46%), Gaps = 108/608 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A  A   KS+FLA +SHE+RTP+NGV+G    L+ T L  +QQDY++T + S   L+
Sbjct: 293 KKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHASQQDYIKTIEKSATNLL 352

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +IN++LD +K+E+GK+ELE + F LR ++DD +SL +  +++K +EL V I   + + +
Sbjct: 353 GIINDILDFSKLEAGKMELENMPFALREVIDDTISLLANSAKEKDLELVVDIEPSINDNV 412

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GD  R  Q+ITNL+GN+IKFT+ G + + + L  E  + + V  E++      +G  + 
Sbjct: 413 SGDALRVSQVITNLVGNAIKFTDSGSVHLKMRLTSEEAEKVNVRCEITD-----TGIGI- 466

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+ H  + F+ F Q  S                                          S
Sbjct: 467 DKPHQAQLFQAFGQADS------------------------------------------S 484

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR  GGTG+GL I+K L+ RM G+IG +S P  GSTF FT                +++
Sbjct: 485 ISRRFGGTGLGLIITKRLINRMGGQIGCISAPGKGSTFWFTLPL-------------KLS 531

Query: 550 NQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA--SG 604
             P S   E   +     L+ +PR +  KV    +   G+Q  +     + L+++A   G
Sbjct: 532 PYPISQPLETDNLIDKTVLLFEPRELSRKVHESLLSHWGMQ-NISITTAEDLARVAGEEG 590

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
                 I     +   D + S   +N L K+       L+L           +STD  + 
Sbjct: 591 RHFDYAI-----ISCNDLASSPNLLNVLNKIAKISDYTLYLC----------SSTDSAAK 635

Query: 665 PSVIMKPLRSSMLAASLQRAMGVG--NKGNIRNWELPSMSLRHLLLGRK---ILIVDDNN 719
            S+I   +   M A   +RA+ V   N    +   +P          R+   +L VDDN 
Sbjct: 636 MSLIQPNVDKVMQAPVGERALAVTLINPHRAQYEAMPFQEAVKETQEREPMSVLAVDDNP 695

Query: 720 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
            NLK+    LK     V   + G++A E +     FD  FMDIQMP  DGF ATK IR  
Sbjct: 696 ANLKLIKTLLKELVTQVTVTDNGQEAVE-IAKAKSFDLIFMDIQMPGTDGFSATKQIR-- 752

Query: 780 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
           EH+ N                   + PI+A+TA  I    E   +SGMDGY+ KP +   
Sbjct: 753 EHSLNR------------------NTPIVAVTAHAIAEERERIDQSGMDGYLPKPIDEAA 794

Query: 840 LYREVSRF 847
           L   +SR+
Sbjct: 795 LKSVISRW 802


>gi|343493983|ref|ZP_08732267.1| hybrid sensory histidine kinase BarA [Vibrio nigripulchritudo ATCC
           27043]
 gi|342825624|gb|EGU60101.1| hybrid sensory histidine kinase BarA [Vibrio nigripulchritudo ATCC
           27043]
          Length = 931

 Score =  243 bits (619), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 203/684 (29%), Positives = 320/684 (46%), Gaps = 120/684 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L A+   I  + ++    H      I QAT +    +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDALKNGINAMAMSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T L  +QQDY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTRLSSSQQDY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+S+IN++LD +K+E+GKL LE + F+ +  L++V SL +  + +KG+EL
Sbjct: 329 LQTIERSANNLLSIINDILDFSKLEAGKLALENIPFDFQECLEEVASLQATSAHEKGLEL 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I ++V L  +  D IE++    
Sbjct: 389 TLKIDPKIPAGVVGDPLRIQQVLTNLVGNSIKFTERGNIDISVELRTQKEDFIELQ---- 444

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                                         V DTG GI    Q+
Sbjct: 445 --------------------------------------------FMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LVG+M GE+   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVGQMGGEVSLTSRLHQGSTFWFTLRLATSD 520

Query: 538 -STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +++ ++ Q+N           G K L+++P    A V +  +   G+ V   S+  +
Sbjct: 521 MPVASDVDTHQLN-----------GKKILLIEPNMQAASVIQQQLINEGLLVTYRSNMPE 569

Query: 597 -------CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 649
                   L  +    +  ++  VEQ  W    S +    NN   +  G  S    L+  
Sbjct: 570 HIEPHEFVLLNLPPNQR-FDITSVEQ--W---ISRAKEIANN---IVLGLPSTELALSEQ 620

Query: 650 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG 709
           + S               I KPL    L  SL +     +       +L S S     L 
Sbjct: 621 LVSEHQ---------VQCITKPLSRRKLLQSLTQCHITEDAALPLIDQLDSES----KLP 667

Query: 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
            K++ VDDN  NLK+ +A L+     VV    G++A         FD   MDIQMP+MDG
Sbjct: 668 LKVMAVDDNPANLKLISALLQERVEQVVTCSNGEQAVAAAQQQ-AFDMILMDIQMPKMDG 726

Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
             A + ++      N ++              N H P++A+TA  +    +  L++GMD 
Sbjct: 727 VTACQEVK------NTKL--------------NSHTPVIAVTAHAMVGERDRLLKAGMDD 766

Query: 830 YVSKPFEAEQLYREVSRFFPPIPD 853
           Y++KP E E + ++V   + P  D
Sbjct: 767 YLTKPIE-EHILQQVLVHWSPHTD 789


>gi|212556606|gb|ACJ29060.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1831

 Score =  243 bits (619), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 179/637 (28%), Positives = 298/637 (46%), Gaps = 102/637 (16%)

Query: 224  LVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 283
            LVG+I   T  +     E+   +    K A+ A  AKS FLA +SHEIRTPMN ++GM  
Sbjct: 979  LVGNIIDITTEK-----ENARQLEIAVKTADEATRAKSDFLANMSHEIRTPMNAIIGMSY 1033

Query: 284  MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 343
            ++  T+L+  Q DYV   Q S ++L+ +IN++LD +K+E+ KLELE   FNL    D+++
Sbjct: 1034 LIQQTDLNRKQSDYVTKIQNSAESLLGIINDILDFSKIEASKLELEMTPFNLNDSFDNLV 1093

Query: 344  SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 403
             + + K+Q KG+EL + I   +P  LIGDP R  QI+ NL  N++KFT++G I +    V
Sbjct: 1094 QIIAHKTQQKGLELLIDIEPNLPVDLIGDPLRLGQILINLANNAMKFTDEGEIIIKARAV 1153

Query: 404  EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 463
            E+    + +E                                                 +
Sbjct: 1154 EQHEQQVTIE------------------------------------------------FA 1165

Query: 464  VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 523
            V+DTG G+  E  +++F  F Q   S +R +GGTG+GL+ISK L   M G+I   S    
Sbjct: 1166 VKDTGIGMTPEQLNKLFKSFSQADASTTRKYGGTGLGLTISKTLTELMAGKIWVESSYGE 1225

Query: 524  GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 583
            GSTF FTA F   +  S    +          S    G+  L+VD      ++     + 
Sbjct: 1226 GSTFLFTAKFAIAAVNSAIEKAS---------SKSLLGLPLLIVDDSVAAREILFTLSKS 1276

Query: 584  LGIQVEVVSDQLQCLSQIA---SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640
            LG + ++ +   + + ++    S      ++L + ++ + D       +     L    Q
Sbjct: 1277 LGFRPDLAASGSEAIEKVKLAHSQGNPYKLLLADWKMPQMDGLALCGAIQG--DLSLVNQ 1334

Query: 641  SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG-------VGNKGNI 693
             KL ++  +              + S I KP+ +S L  ++   MG       V   G +
Sbjct: 1335 PKL-VIVTAYDRDEMLKQAGTAELDSAITKPVSASTLLDTVMAVMGKKSSQPKVTESGKL 1393

Query: 694  RNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH 753
                  ++S    ++G  +L+V+DN++N ++A   L   G  V     G++A ++ +  +
Sbjct: 1394 ------NISAAKDIVGAHVLLVEDNDINQEIATELLNMAGIEVSTACNGQEAVDMAI-AN 1446

Query: 754  QFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD 813
             +DA  MDIQMP MDG+EAT+ IR                     N     +PI+AMTA+
Sbjct: 1447 SYDAILMDIQMPIMDGYEATRNIR--------------------LNPDKQLIPIIAMTAN 1486

Query: 814  VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
             +    E+C+ +GM+ ++ KP   +++Y+ ++++  P
Sbjct: 1487 AMSGDREKCIEAGMNEHIPKPINPQEVYQTLAKWIEP 1523


>gi|260779461|ref|ZP_05888351.1| sensory box histidine kinase/response regulator [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604270|gb|EEX30574.1| sensory box histidine kinase/response regulator [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 1205

 Score =  243 bits (619), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 174/602 (28%), Positives = 298/602 (49%), Gaps = 94/602 (15%)

Query: 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 318
           AKS FLA +SHEIRTPMN ++GM  + + T+L   Q++Y++  + S  +L+ LIN++LD 
Sbjct: 480 AKSDFLANMSHEIRTPMNAIIGMSYLALKTDLSKAQRNYIQKVKLSADSLLGLINDILDF 539

Query: 319 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 378
           +K+E+GKL++E V F+L  +LD++ +L   ++ ++G+EL ++I   VP  L+GDP R  Q
Sbjct: 540 SKIEAGKLDIENVDFHLENVLDNISNLVGLRASERGLELLIHIDRDVPTALVGDPLRLGQ 599

Query: 379 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 438
           I+ NL  N++KFTE+G I V++ L +                                  
Sbjct: 600 ILINLANNAVKFTEQGEIKVSIALEK---------------------------------- 625

Query: 439 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 498
               +DG+    K S  D          +G G+  E  +++F  F Q   S +R +GGTG
Sbjct: 626 ----KDGNDITLKFSVTD----------SGIGMTPEQCNKLFNKFTQADSSTTRKYGGTG 671

Query: 499 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 558
           +GL+ISK L   M G+IG  S    GSTF+FT   G     S+    +Q+      V  E
Sbjct: 672 LGLAISKELCQLMGGDIGVTSEQGKGSTFSFTVQLG----VSHALKQEQL-----LVPKE 722

Query: 559 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKIINMILVEQ 615
              +K LVVD       +    ++ L  +   V++    L  L +  +  +  ++++ + 
Sbjct: 723 LGQLKILVVDDNASARLIVEDILESLQFETTSVTNVDSALDELEEAITNKQPYDLVISDW 782

Query: 616 EVWEKD-TSVSTLFVNNLRKLGCGFQSKLFLLA----NSISSSRANTSTDGVSIPSVIMK 670
           ++  KD   ++ +  +   +L    Q KL +L       ++ +  N     ++ PS++ K
Sbjct: 783 QMPVKDGIDLAEIMWD---RLAEREQPKLLMLTAYGREELTDAFINRQ---LTPPSILDK 836

Query: 671 PLRSSMLAASLQRAMGVGNKGNIRN--WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 728
           P+ SS L  ++    GV      R+   E   ++    L G ++L+V+DN +N ++A   
Sbjct: 837 PVTSSHLFDAIVTLYGVEGSRVSRSDVEEQTQLANAQQLAGAQLLLVEDNEINQELATEL 896

Query: 729 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788
           L+     V   E G+ A + L   H FD   MD QMP MDG+EAT+ IR           
Sbjct: 897 LEGQQVHVTIAENGQVAID-LYKSHDFDGILMDCQMPVMDGYEATEFIR----------- 944

Query: 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
                    + + +  +PI+AMTA+V++   E+   +GM+  ++KP +   ++  ++++ 
Sbjct: 945 ---------QKLDDKQIPIIAMTANVMERDKEKAKNAGMNDIIAKPIDVGAMFSTLAKWI 995

Query: 849 PP 850
            P
Sbjct: 996 TP 997


>gi|423104565|ref|ZP_17092267.1| signal transduction histidine-protein kinase BarA [Klebsiella
           oxytoca 10-5242]
 gi|376382528|gb|EHS95261.1| signal transduction histidine-protein kinase BarA [Klebsiella
           oxytoca 10-5242]
          Length = 917

 Score =  243 bits (619), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 190/606 (31%), Positives = 294/606 (48%), Gaps = 109/606 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNTTQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS---IEVETELSSSKNTLSGY 426
           IGDP R +QIITNLMGN+IKFTE G+I V   LVE+   S   +++E ++    +T  G 
Sbjct: 403 IGDPLRLQQIITNLMGNAIKFTEHGNIDV---LVEQRAISNSRVQIEVQI---HDTGIGI 456

Query: 427 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 486
           P  D+   ++ F+                                             Q 
Sbjct: 457 PERDQSRLFQAFR---------------------------------------------QA 471

Query: 487 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 546
             SISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S 
Sbjct: 472 DASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISL 518

Query: 547 QMNNQ--PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 603
            +N    P+SV ++   G K   ++     A+ +   +    ++V V S  +  L     
Sbjct: 519 DLNPNAVPDSVPTQCLAGKKLAYIEANAAAAQCTMELLATTPLEV-VYSPTMTALPDAH- 576

Query: 604 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
                +++L    V  +D S     +    KL       +  L      S      DG++
Sbjct: 577 ----YDILLAGIPVSIRDLSQHRDKLERASKLADHL---VLALPCHAQVSAETLRHDGIA 629

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 723
             + ++KPL S+ L  +L  +         +   LP  S     L   ++ VDDN  NLK
Sbjct: 630 --ACLLKPLTSTRLLPALTASC------QTQPTVLPPRS-DSKKLPMTVMAVDDNPANLK 680

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           +  A L+     V+  + G+ A E      Q D   MDIQMPEMDG  A ++I ++ H  
Sbjct: 681 LIGALLEDLVQHVILCDSGQHAVERARETQQ-DLILMDIQMPEMDGIRACELIHQLPHQQ 739

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
                                 P++A+TA  ++   E+ L +GM+ Y++KP E ++LY  
Sbjct: 740 QT--------------------PVIAVTAHALEGQREKLLSAGMNDYLAKPIEEDKLYSL 779

Query: 844 VSRFFP 849
           + R+ P
Sbjct: 780 LLRYQP 785


>gi|157961008|ref|YP_001501042.1| hybrid sensory histidine kinase BarA [Shewanella pealeana ATCC
           700345]
 gi|157846008|gb|ABV86507.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
          Length = 929

 Score =  243 bits (619), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 184/598 (30%), Positives = 278/598 (46%), Gaps = 87/598 (14%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    L+ T L  +QQDY+RT + S   L+
Sbjct: 291 KKRAQEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHSSQQDYIRTIERSATNLL 350

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN++LD +K+E+GK+ LE + F+LR  +++ +++ S  +++K + L + +  R+PE +
Sbjct: 351 SIINDILDFSKLEAGKMVLENIPFSLRETIEETVTMLSSSAREKELALVIDVDARIPEDV 410

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GD  RF QIITNL+GN+IKFT+KG + + + L EEV D                   V 
Sbjct: 411 SGDAMRFSQIITNLVGNAIKFTDKGSVQLKLQL-EEVKDG-----------------KVH 452

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
            RC                               + DTG G+  + QS +F  F Q   S
Sbjct: 453 IRCE------------------------------IIDTGIGVDEQQQSSLFQAFGQADSS 482

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR  GGTG+GL I+K LV RM G+IG  S PN GSTF F+             N  Q +
Sbjct: 483 ISRRFGGTGLGLVITKRLVNRMGGQIGCYSEPNQGSTFWFSLPL----------NISQYS 532

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
                  S  +G   ++ +P  +        + R G++V +  +  Q    +   + + +
Sbjct: 533 INDTLPLSTLEGKSIMLFEPNGLTQHAIERMLLRWGLKVTIAKNIKQLEFVLTQSNHVFD 592

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
             L+        +  +     N  KL       L L+++ I      +      I   + 
Sbjct: 593 FGLMSCRAVTTTSQPA-----NALKLAKSKIDYLLLISDCIEQEDVFSQIRPY-IDKQLS 646

Query: 670 KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 729
            P+   +L++SL          N+      S  ++   L   +L VDDN  NLK+    L
Sbjct: 647 MPVGEKLLSSSLLDPHSSVLNDNLIALTPLSAPIKQENLS--VLAVDDNPANLKLIDTLL 704

Query: 730 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789
           K     V   + G+ A + L     +D  FMDIQMP  DG  ATK IR            
Sbjct: 705 KELVTQVQVADTGELAVK-LAKERSYDLIFMDIQMPGTDGITATKQIR------------ 751

Query: 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                    N +N + PI+A+TA  I    E    SGMDGY+ KP +   L   ++R+
Sbjct: 752 --------ANSANRNTPIIAVTAHAIAEERERITSSGMDGYLPKPIDEAALKGVITRW 801


>gi|423121876|ref|ZP_17109560.1| signal transduction histidine-protein kinase BarA [Klebsiella
           oxytoca 10-5246]
 gi|376393489|gb|EHT06146.1| signal transduction histidine-protein kinase BarA [Klebsiella
           oxytoca 10-5246]
          Length = 917

 Score =  243 bits (619), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 183/606 (30%), Positives = 290/606 (47%), Gaps = 109/606 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNTTQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRNALDEVVTLLAHSAHDKGLELTLNIKNDVPDNI 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I V V        S+++E ++    +T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTEHGNIDVLVEQRALSNTSVQIEIQI---HDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN+V          G     ++     A+ +   +  L ++V V S     L +    
Sbjct: 522 --PNAVQESPLTHCLAGKTLAYIEANAAAAQCTMELLTTLPLEV-VYSPTFSALPEAH-- 576

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT-STDGVS 663
               +++L    V  +D S      +NL K  C     L L     +   A T   DGV+
Sbjct: 577 ---YDILLAGLPVSMRDLSQQK---DNLAK-ACAMADHLLLALPCHAQINAETLKQDGVA 629

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 723
             + ++KPL ++ L  +L  +        + + +   + +        ++ VDDN  NLK
Sbjct: 630 --ACLLKPLTATRLIPALTASCRTRTPIVLPHSDSSKLPM-------TVMAVDDNPANLK 680

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           +    L      V   + G++A E      Q D   MDIQMP+MDG  A ++IR + H  
Sbjct: 681 LIGVLLDDLVQHVTLCDSGQRAVE-QAKEMQLDLILMDIQMPDMDGIRACELIRHLPH-- 737

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
                                 P++A+TA       E+ +++GM+ Y++KP E ++L+  
Sbjct: 738 ------------------QQQTPVIAVTAHAFDGQKEKLMKAGMNDYLAKPIEEDKLHNL 779

Query: 844 VSRFFP 849
           + R+ P
Sbjct: 780 LLRYQP 785


>gi|359788967|ref|ZP_09291930.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium alhagi
            CCNWXJ12-2]
 gi|359255194|gb|EHK58127.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium alhagi
            CCNWXJ12-2]
          Length = 1258

 Score =  243 bits (619), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 186/648 (28%), Positives = 301/648 (46%), Gaps = 115/648 (17%)

Query: 227  HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM 286
            H+  ++ + I ++++    + E +++A  AD AKS+FLA +SHEIRTPMNGVLGM ++L 
Sbjct: 687  HLIGSSTD-ITELKQRESELQEAQRRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLA 745

Query: 287  DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 346
             +ELD  Q+ +      SG AL+++IN++LD +K+++G+L L+   FNL   ++DV +L 
Sbjct: 746  KSELDSKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLV 805

Query: 347  SGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 406
            S ++++K +EL V ++  + + +IGD GR RQI+TNL+GN++KFT+ GH+ V V      
Sbjct: 806  STRAKEKDLELIVRVAPHLHDLVIGDVGRIRQIVTNLLGNAVKFTDSGHVLVDV------ 859

Query: 407  VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 466
                             +G  V                           ++  L +SV D
Sbjct: 860  -----------------TGETV--------------------------GEMSKLRISVTD 876

Query: 467  TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526
            TG GIP E   ++F  F QV  S +R H GTG+GL+I+  LV  M GEIG  S    GST
Sbjct: 877  TGIGIPREKLRQVFEKFSQVDASSTRRHEGTGLGLAITSRLVDLMGGEIGVESTEGKGST 936

Query: 527  FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL-- 584
            F FT              S    N   +   +  G + LVVD   +   +    +     
Sbjct: 937  FWFTLAL----------PSAGRPNGRKAAPVDVTGARILVVDDNAVNRAILTEQMASWTF 986

Query: 585  -GIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 643
                 E  ++ L+ L   A+    ++ ++++ ++      ++   +  + +         
Sbjct: 987  DSCAAESGAEGLKVLEAAAAYGVPVDCVVLDYQM----PGMTGAEMARIVRASPNLTDTP 1042

Query: 644  FLLANSISSSRANTSTDGVSIPSVIMKPLRSSM----LAASLQR---AMGVGNKG----- 691
             ++  S+  S  N +   +SI + ++KP RSS     L A++Q+   + G+         
Sbjct: 1043 IVMLTSVDQSLVNATYRDLSIDAQLIKPARSSTLLEALVATIQKRRSSQGLHPAAPVAPE 1102

Query: 692  ----------NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVER 741
                      ++R    P+ S    L    IL+ +DN VN  V    L         V  
Sbjct: 1103 IRIEPTSPIESVRPRSRPAKSNGERL---DILVAEDNEVNQLVFTQILGETDCTFQIVGN 1159

Query: 742  GKKATELL--MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYEN 799
            G+ A      M P       MD+ MPEM+G EAT  IRE+E    NR             
Sbjct: 1160 GRLAVAAFQEMNPGMI---LMDVSMPEMNGLEATAAIRELEGATQNR------------- 1203

Query: 800  VSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                 VPI+ +TA  ++   E C+ +GMD Y+ KP   + L  ++ R+
Sbjct: 1204 -----VPIVGVTAHALKGDRERCIEAGMDDYLPKPISPKALLDKIERW 1246


>gi|117926233|ref|YP_866850.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
 gi|117609989|gb|ABK45444.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
          Length = 1202

 Score =  243 bits (619), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 190/620 (30%), Positives = 308/620 (49%), Gaps = 106/620 (17%)

Query: 248  ELKK---KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            ELKK    AE+A+ +KS+FLA +SHEIRTPMNGV+GM+++L +TEL   QQ ++RTA+ S
Sbjct: 527  ELKKAMLDAESANRSKSEFLANMSHEIRTPMNGVVGMMELLSNTELTPEQQSHMRTARNS 586

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             ++L+++IN++LD +K+E+GKLELE ++F+L  +++DV +L + +   + +EL       
Sbjct: 587  AESLLTIINDILDFSKIEAGKLELEEIAFDLAELVEDVTALLAQRVDSEKLELLHNAPAD 646

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +P  + GDP R RQ++ NL+GN++KFT +G + V + +  +  D++ V TE+   ++T  
Sbjct: 647  LPMQVAGDPTRLRQVLVNLVGNAVKFTPEGEVEVRMTVERQDADTVTVLTEV---RDTGI 703

Query: 425  GYPVADRCHSWKGFKTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483
            G   A R    + F+ F Q DGST                                    
Sbjct: 704  GIDEAVRP---RLFRMFTQADGST------------------------------------ 724

Query: 484  MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 543
                   +R  GGTG+GL+ISK LV  M GE+GF S+   GSTF F   F   +      
Sbjct: 725  -------TRRFGGTGLGLAISKQLVELMGGEVGFSSVMGQGSTFWFRITFPIVA------ 771

Query: 544  NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIA 602
             +Q +    +S     QG++ALVVD       +   ++   G+  +E  S + Q L +IA
Sbjct: 772  KAQAVAGGVDS----LQGLRALVVDDNATNRNLLGRYLSNWGVTHLECASGK-QALEKIA 826

Query: 603  SGSK--------IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 654
              +K        I+++++   +       ++ +  +         +    +L  S  + R
Sbjct: 827  DAAKFGLSFDLAILDLLMPGMDGLALAERITQMVQDK------QIKPLRMVLLTSAHARR 880

Query: 655  ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNK---GNIRNWELPSMSLRHLLLGRK 711
                  GV   + + KP+R + L A L + M  G +   G +      +MS         
Sbjct: 881  EELEQAGVV--AALSKPIRQAQLRALLGQVM-RGERVVGGLVERISQNNMS---ATFDAA 934

Query: 712  ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
            +L+V+D+ +N +VA   L   G  V     G +   L    H++D   MDIQMP MDG+E
Sbjct: 935  VLLVEDHPINQQVARGMLAGLGCRVEIANDGHEGVRLF-ARHRYDLVLMDIQMPGMDGYE 993

Query: 772  ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
             T  IR+ME   + R  R                PI+A+TA+ ++   + CL + MD Y+
Sbjct: 994  TTDAIRQMER--SERWPR---------------TPIVALTANAMEQDRDRCLAADMDDYL 1036

Query: 832  SKPFEAEQLYREVSRFFPPI 851
            SKP   ++L   +S++   I
Sbjct: 1037 SKPISLDRLKAAMSKWLKTI 1056


>gi|381160280|ref|ZP_09869512.1| PAS domain S-box [Thiorhodovibrio sp. 970]
 gi|380878344|gb|EIC20436.1| PAS domain S-box [Thiorhodovibrio sp. 970]
          Length = 1306

 Score =  243 bits (619), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 180/629 (28%), Positives = 305/629 (48%), Gaps = 94/629 (14%)

Query: 228  IFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 287
            IF+ +   +  V  D  G+ + ++ AE A+ +KSQFLA +SHEIRTPMN V+G+ D+L+ 
Sbjct: 539  IFKLSSGEVVAVYNDLTGIKQAQEAAERANRSKSQFLANMSHEIRTPMNAVIGLSDLLLH 598

Query: 288  TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 347
            T LD  Q+DY+   + S + L+ +IN++LD +K+E+GKLELE+ SF L  +LD + +LF+
Sbjct: 599  TPLDSKQRDYLGKIRNSSRMLLGIINDILDYSKIEAGKLELESQSFRLEDLLDQMRTLFA 658

Query: 348  GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 407
              +   G+EL   +    P TL GD  R  Q++TNL+ N+IKFTE+G   VT+ + E+ +
Sbjct: 659  AAADASGIELIFELDIHHPRTLEGDALRLAQVLTNLLSNAIKFTERGQ--VTLSIREQGL 716

Query: 408  DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 467
             + E++                                              L  +V DT
Sbjct: 717  SNAEMQ----------------------------------------------LTFAVRDT 730

Query: 468  GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
            G GI    Q R+F  F Q   S +R +GGTG+GL IS+ L+ RM GE+   S P  GSTF
Sbjct: 731  GIGIEPAQQERLFKAFSQADSSTTRKYGGTGLGLVISQRLIERMGGELRVESRPGQGSTF 790

Query: 528  TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 587
            +FT      +  +    +  +            G + LVVD       V R  ++     
Sbjct: 791  SFTITLPVTTEDATHPAAGLI----------CPGTRVLVVDDHEAARTVLRGILESHDAD 840

Query: 588  VEVVSDQL---QCLSQIASGSKIINMILVEQEVWEKDTSVSTL-FVNNLRKLGCGFQSKL 643
            VE   + L   Q + +    +     IL++ ++  +   + TL  +  LR  G   Q  +
Sbjct: 841  VEEADNGLSAIQAVQRAEQANAPFAFILMDWKMPGELDGIQTLERLQALRDSGELRQDAI 900

Query: 644  FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM-GVGNKGNIRNWELPSMS 702
              L  S + ++ + +       + + KP+    L  ++ +A+ G  ++ +I     P+  
Sbjct: 901  PALIVS-AYNQDDLAPHATLYRAFLSKPITPRALLDTIGQALSGPDDRADI-----PAAR 954

Query: 703  LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 762
                   + +L+V+DN +N +VA A +++    ++  E G++A + L+  H+ D   MD+
Sbjct: 955  ALPCFSEQTVLLVEDNALNQEVACAIMEKTQVRIILAENGREAVD-LVSQHKVDLILMDL 1013

Query: 763  QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNF-HVPILAMTADVIQATYEE 821
            QMP MDGFEA++ IR                        +F  +PI+A++A V++     
Sbjct: 1014 QMPVMDGFEASRRIR-----------------------PHFPELPIVALSAAVMEEDRAR 1050

Query: 822  CLRSGMDGYVSKPFEAEQLYREVSRFFPP 850
               +GM+ +++KP ++  L   + ++  P
Sbjct: 1051 AQAAGMNDHLAKPIDSHALISTLKKWLHP 1079


>gi|393768134|ref|ZP_10356676.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
 gi|392726527|gb|EIZ83850.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
          Length = 678

 Score =  243 bits (619), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 182/587 (31%), Positives = 283/587 (48%), Gaps = 95/587 (16%)

Query: 251 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 310
           ++AEAA VAKS+FLATVSHE+RTP+NG+LGM D+++ T LD+ Q+ YV   + SG+AL+ 
Sbjct: 166 ERAEAASVAKSRFLATVSHEMRTPLNGILGMADLVLGTNLDLEQRTYVEAVRTSGQALLG 225

Query: 311 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 370
           LI+ VLD +++E+G+L+L A  F+L A+ + V+ L + ++QDKG+E+A+ +++  P  L+
Sbjct: 226 LIDGVLDFSRIEAGRLDLAAEPFDLPALAESVVELLAPRAQDKGIEIALDVTESFPRGLV 285

Query: 371 GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 430
           GD  R RQI+ NL GN+IKFTE+G + V++                              
Sbjct: 286 GDADRVRQILINLAGNAIKFTERGGVGVSL------------------------------ 315

Query: 431 RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 490
                 GF    QDG              + ++V DTG GIP +    +F  F Q   S 
Sbjct: 316 ------GFTPI-QDGGG-----------EVTLAVSDTGSGIPEDRLPILFEEFEQGDGSA 357

Query: 491 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 550
           SR+H GTG+GL+I++ LV RM G I   S    GSTF              E    Q   
Sbjct: 358 SRSHEGTGLGLAITRRLVTRMGGRIEADSRVGRGSTFRVVLPL-------PEAEGAQTGP 410

Query: 551 QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG---IQVEVVSDQLQCLSQIASGSKI 607
            P       +G + L+V   P +A      + R G   + V  + D L  LS  A     
Sbjct: 411 AP---LPRLEGRRCLIVADSPYQAPYLARSLSRAGAATVIVGTLEDGLDALSGAA----- 462

Query: 608 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
            + +L ++ + +   +V     +  R  GCG +S L LL  S    R   +         
Sbjct: 463 FDAVLADRALGD---AVVRQIADAAR--GCGIRSSLVLL--SPFDRRGFGAPGAAGFDGY 515

Query: 668 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAA 727
           ++KP+R+  L   L     +     + +  +P+ +      G ++L+ +DN +N  +A  
Sbjct: 516 LIKPVRARSLFERL-----LAPPVAVESATIPAPAPARTGTGLRVLLAEDNPINALLATR 570

Query: 728 GLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787
            L+R GA VV    G +A E L     FD   +D++MP +DG E  + IR  E       
Sbjct: 571 ALERLGAEVVHAVDGVEALERLQSSGPFDLALIDVRMPRLDGHETARRIRAAEAAGEG-- 628

Query: 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
                        +  H  ++A+TA+  +A       +G DG+++KP
Sbjct: 629 -------------TRLH--LVALTANAGRADEIAARAAGFDGFLAKP 660


>gi|114564655|ref|YP_752169.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
            400]
 gi|114335948|gb|ABI73330.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
            400]
          Length = 1236

 Score =  242 bits (618), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 188/658 (28%), Positives = 303/658 (46%), Gaps = 83/658 (12%)

Query: 190  DPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMEL 249
            DP   +E+  R + K       +S    +             T   I + + +   ++E 
Sbjct: 652  DPVGTYEIEFRMRGKNGLYFWVLSRGRAVEFSEDGCSKRMLGTHKDITRQKSNEVALLEA 711

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K+ AE A++ KS+FLA +SHEIRTPMN ++GML +   T L V QQDY+  A  S ++L+
Sbjct: 712  KQDAELANMYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTVQQQDYLNKAGFSAQSLL 771

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
             +IN++LD +K+E+GKLELE V+F L  +LD V+ + + K+Q+KGVEL +Y        L
Sbjct: 772  RIINDILDFSKIEAGKLELERVAFPLDKVLDHVIDINAIKAQEKGVELLLYAPVTAGLIL 831

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
             GDP R  Q+I NL+ N++KFT+ G                  E EL           V 
Sbjct: 832  YGDPLRLGQVIVNLLSNAVKFTQTG------------------EVELGCED-------VG 866

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
            +R                        D I +   V DTG GI  + Q+ +F  F Q   S
Sbjct: 867  ER-----------------------DDRITMKFWVRDTGIGISKDQQAMLFDAFSQADGS 903

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GGTG+GLSISK+LV  M G +   S    GS F+FT  F           +++  
Sbjct: 904  TTRKYGGTGLGLSISKHLVSMMGGTMQVESELGSGSIFSFTISF---------EIAEEQV 954

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
              P  V  +   +  LVVD  P   ++    +      V       + L  +    K ++
Sbjct: 955  IAPLVVPEQLNNLTTLVVDDNPSALQIYSTLMTDFSFGVNTADSGQKALDILR--KKPVD 1012

Query: 610  MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
            ++L++  + E +       ++ +   G   +  + +L  + ++   +      S+ +V+ 
Sbjct: 1013 LLLLDWMMPEMNGCDVIKAIDEMVADGSIAKRPIIILMTAYAAEPLDHELQKNSVYAVLQ 1072

Query: 670  KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 729
            KP ++S L   +  A     K N     + +   +   L   +L+V+DN +N +VA+  L
Sbjct: 1073 KPFKASALFDEIINAFAKEPKLNAMPVIIEAEPAKASGL---VLLVEDNFINQQVASELL 1129

Query: 730  KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789
            K  G  VV  + G+ A +++     FDA  MDIQMP MDG  AT  +R            
Sbjct: 1130 KSAGYEVVIADNGQVALDVI-DSKPFDAVLMDIQMPVMDGLTATAELR------------ 1176

Query: 790  GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                    +  S   +PI+AMTA  +    E+ L +GM+ +++KP    +L+  +S +
Sbjct: 1177 --------KRYSKQQMPIIAMTAHAMSGDKEKSLAAGMNAHITKPIVLTELFETLSHW 1226



 Score = 46.6 bits (109), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 17/140 (12%)

Query: 713  LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEA 772
            L+VDDN   L++ +  +  +   V   + G+KA ++L      D   +D  MPEM+G + 
Sbjct: 970  LVVDDNPSALQIYSTLMTDFSFGVNTADSGQKALDILRK-KPVDLLLLDWMMPEMNGCDV 1028

Query: 773  TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832
             K I EM       +  G ++             I+ MTA   +    E  ++ +   + 
Sbjct: 1029 IKAIDEM-------VADGSIAKRPI---------IILMTAYAAEPLDHELQKNSVYAVLQ 1072

Query: 833  KPFEAEQLYREVSRFFPPIP 852
            KPF+A  L+ E+   F   P
Sbjct: 1073 KPFKASALFDEIINAFAKEP 1092


>gi|423125482|ref|ZP_17113161.1| signal transduction histidine-protein kinase BarA [Klebsiella
           oxytoca 10-5250]
 gi|376399088|gb|EHT11709.1| signal transduction histidine-protein kinase BarA [Klebsiella
           oxytoca 10-5250]
          Length = 917

 Score =  242 bits (618), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 190/610 (31%), Positives = 298/610 (48%), Gaps = 117/610 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + T+L+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNTTQRDHLTTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS---IEVETELSSSKNTLSGY 426
           IGDP R +QIITNLMGN+IKFTE G+I V   LVE+   S   +++E ++    +T  G 
Sbjct: 403 IGDPLRLQQIITNLMGNAIKFTEHGNIDV---LVEQRAISNSRVQIEVQI---HDTGIGI 456

Query: 427 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 486
           P  D+   ++ F+                                             Q 
Sbjct: 457 PERDQSRLFQAFR---------------------------------------------QA 471

Query: 487 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 546
             SISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H S 
Sbjct: 472 DASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISL 518

Query: 547 QMNNQ--PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 603
            +N    P+SV ++   G K   ++     A+ +   +    ++V V S  +  L     
Sbjct: 519 DLNPNAVPDSVPTQCLAGKKLAYIEANAAAAQSTMELLATTPLEV-VYSPTMTALPDAH- 576

Query: 604 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT-STDGV 662
                +++L    V  +D S      + L +  C     L L     +   A T   DG+
Sbjct: 577 ----YDILLAGIPVSIRDLSQHR---DKLAR-ACKLADHLVLALPCHAQVSAETLRQDGI 628

Query: 663 SIPSVIMKPLRSSMLAASLQ---RAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 719
           +  + ++KPL S+ L  +L    +A          + +LP            ++ VDDN 
Sbjct: 629 A--ACLLKPLTSTRLLPALTASCQAQPTTLPPRADSKKLPM----------TVMAVDDNP 676

Query: 720 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779
            NLK+  A L+     V+  + G+ A E      Q D   MDIQMPEMDG  A ++I ++
Sbjct: 677 ANLKLIGALLEDLVQHVILCDSGQHAVEQARETQQ-DLILMDIQMPEMDGIRACELIHQL 735

Query: 780 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839
            H                        P++A+TA  ++   E+ L++GM+ Y++KP E ++
Sbjct: 736 PHQQQT--------------------PVIAVTAHALEGQREKLLKAGMNDYLAKPIEEDK 775

Query: 840 LYREVSRFFP 849
           L+  + R+ P
Sbjct: 776 LHSLLLRYQP 785


>gi|238750558|ref|ZP_04612058.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei
           ATCC 43380]
 gi|238711206|gb|EEQ03424.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei
           ATCC 43380]
          Length = 891

 Score =  242 bits (618), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 186/607 (30%), Positives = 285/607 (46%), Gaps = 109/607 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T L   Q DY++T Q S   L+
Sbjct: 253 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLTPPQTDYLQTIQRSANNLL 312

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +IN+VLD +K+E+ KL LE + F LR  LD+V+ L +  + +KG+EL ++++  VPE +
Sbjct: 313 CIINDVLDFSKLEAEKLILEHIPFPLRGALDEVVILLAHTAHEKGLELTLHVNQDVPEQV 372

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGD  R +QIITNL+GN+IKFTE+G+I + V +                           
Sbjct: 373 IGDAMRLQQIITNLLGNAIKFTEQGNIDILVAV--------------------------- 405

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                ++ +A+ + L+V + DTG GI    Q+++F  F Q   S
Sbjct: 406 ---------------------QAKTAEQVTLVVEIHDTGIGISESQQTQLFQAFRQADAS 444

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S  N GSTF F            E N   ++
Sbjct: 445 ISRRHGGTGLGLVITERLVKEMGGDISFYSQVNRGSTFKFHLTL--------ELNEAILS 496

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
            +P+   S  +G K+L              +I+R         D L C     + S  + 
Sbjct: 497 RRPD--MSHLEG-KSLA-------------YIERNATAARATLDILSCTPLQVTHSLTLA 540

Query: 610 MILVEQEVWEKDTSVSTLFVNNLR----KLGCGFQ-SKLFLLANSISSSRANTSTDGVSI 664
             L +Q        V   + NN+     KL    + S+  +LA    S         +  
Sbjct: 541 Q-LPKQHYDFLLVGVPIPYRNNMAVHQDKLLTAMKISERVILALPSQSQIEAEQLKQIGA 599

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL--LGRKILIVDDNNVNL 722
            + ++KP+ S+ L   L             N  LP+      L  L  K++ VDDN  NL
Sbjct: 600 KACMIKPISSNRLIPLLSYEEA--------NCVLPAAEPPRKLPKLPFKVMAVDDNPANL 651

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
           K+    L+      V  + G KA       +  +   MDIQMPE+DG  A+++I +M H+
Sbjct: 652 KLIGTLLEELVEETVLCDSGAKAIA-YARENTLEIILMDIQMPEIDGIRASEVIHQMSHH 710

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
            +                     PI+A+TA  ++   E+ L+ GM  Y++KP +  +L +
Sbjct: 711 QD--------------------TPIIAVTAHAVRGQQEQLLKLGMADYLAKPIDEARLIQ 750

Query: 843 EVSRFFP 849
            +SR+ P
Sbjct: 751 ALSRYQP 757


>gi|254443126|ref|ZP_05056602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257434|gb|EDY81742.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 724

 Score =  242 bits (618), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 181/596 (30%), Positives = 285/596 (47%), Gaps = 111/596 (18%)

Query: 260 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
           +S+FLA +SHEIRTPMNGV+GM ++L  TEL   Q++YV T + SG+AL+ LIN +LD +
Sbjct: 198 RSEFLANMSHEIRTPMNGVVGMAELLGHTELGEEQREYVDTIRNSGEALLGLINNILDLS 257

Query: 320 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
           K+E+GK+ L+A+ F+ R++L+D + L   K+ +K +EL  +   +VP  LIGDP R RQ+
Sbjct: 258 KLEAGKMILDAIEFDPRSVLEDTVDLLGAKADEKLIELTGFAESQVPSKLIGDPSRLRQV 317

Query: 380 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
           + NL+GN++KFT  G + + V L+                 NT S   V           
Sbjct: 318 LLNLVGNALKFTANGTVRLRVTLM-----------------NTSSSEAV----------- 349

Query: 440 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
                               L  SV DTG GI  E Q R+F PF Q   +++R +GGTG+
Sbjct: 350 --------------------LRFSVRDTGVGIDEEQQKRLFKPFSQAEGAVARKYGGTGL 389

Query: 500 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 559
           GLSIS+ +   M G+I   S  + GS F+F   F            ++++  P       
Sbjct: 390 GLSISQQIARAMGGQILLESERDKGSEFSFALRF------KLPEKDEEVSEAPKE----- 438

Query: 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE 619
                       IRA V   H   L +Q + +   L   + +    +  +  + E E   
Sbjct: 439 -----------EIRALVLVNHTAEL-VQYDELFASLDVKATVVDAQERADEAIAEAE--R 484

Query: 620 KDTSVSTLFVNNLRKLG----------CGFQSKLFLLANSISSSRANTSTDGVSIPSV-I 668
           +D        ++  ++G            F+ K   L ++I  S+ ++  +G     + +
Sbjct: 485 RDAPYHFCLYDDGYRIGGYKSKASNRLGSFEPKGLPLIHAIPMSQRSSFPNGKHSERIQL 544

Query: 669 MKPLRSSMLAASLQRAM----GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            KP+R S L  ++ +A+     +  +   RN     +SL  L    ++LIVDD+ +N  +
Sbjct: 545 RKPIRRSELERAILQAVDPQAALTAQIRARN---ERVSLPELDPSLRLLIVDDHPLNQGI 601

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
           A   L+R G        G +A + +     +D  FMD QMPEMDGFEAT+ IR+ E N  
Sbjct: 602 ARMILRRLGFQADIAVNGVEALD-MTANRNYDLVFMDCQMPEMDGFEATREIRKREKN-- 658

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
                                 I+AMTA  ++   ++CL  GMD Y++KP + +++
Sbjct: 659 -----------------GTRTTIVAMTASALEEDRQKCLDIGMDDYLTKPVKPQEI 697


>gi|251788450|ref|YP_003003171.1| hybrid sensory histidine kinase BarA [Dickeya zeae Ech1591]
 gi|247537071|gb|ACT05692.1| Hpt sensor hybrid histidine kinase [Dickeya zeae Ech1591]
          Length = 922

 Score =  242 bits (618), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 190/613 (30%), Positives = 290/613 (47%), Gaps = 101/613 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T+L  TQ+DY++T + S   L+
Sbjct: 281 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQLTTTQKDYLQTIERSANNLL 340

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F+L   LD+V+ L +  + +KG+EL + I   VPE  
Sbjct: 341 NIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQF 400

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +QI+TNL+GN+IKFTE+G+I             I +E     +   L      
Sbjct: 401 VGDPLRLQQIVTNLLGNAIKFTEQGNI------------DIRIEKRKQENLQVL------ 442

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                         L + ++DTG GI    Q+++F  F Q   S
Sbjct: 443 ------------------------------LEIQIKDTGIGIAEAQQTQLFQAFRQADTS 472

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN G+TF  T              + Q+N
Sbjct: 473 ISRQHGGTGLGLVITQRLVREMGGDISFHSKPNQGTTFWCTV-------------NLQLN 519

Query: 550 N---QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
               +P+      QG     V+  P  A+ +   +    + V   S  L+ L +     +
Sbjct: 520 PHMLEPDYHFDRLQGKHLAYVETNPAAAQATLDILVHTPLTVS-YSPTLEQLPE-----R 573

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
             +++L+   +  ++T +   F   +R   C   S + L   S++   A        I +
Sbjct: 574 TFDILLIGVPIHFRNTLLD--FTPQIRDF-CRLASSVILALPSMAELEAEQLM-SFGIHA 629

Query: 667 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
            + KP+ +  L + LQ          +     P+ S   L L   ++ VDDN  NLK+  
Sbjct: 630 SLSKPITAPRLLSLLQDNSLFNQDNEVHTLPPPTASFNRLPLN--VMAVDDNPANLKLIG 687

Query: 727 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
           A L+     ++  E G  A        + D   MDIQMP MDG +A++ IR +       
Sbjct: 688 ALLEEQVENIILCENGADAIARAQET-RLDIILMDIQMPGMDGLQASEHIRRLPQ----- 741

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV-- 844
                          + H PI+A+TA  +    EE L+SGMD Y+SKP + EQ+ R+   
Sbjct: 742 ---------------HMHTPIVAVTAHTMSGEREELLQSGMDDYLSKPID-EQMLRQTLL 785

Query: 845 -SRFFPPIPDRSP 856
              F P  P   P
Sbjct: 786 KHAFKPQHPQPEP 798


>gi|119493069|ref|ZP_01623994.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119452814|gb|EAW33989.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1727

 Score =  242 bits (618), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 199/691 (28%), Positives = 325/691 (47%), Gaps = 125/691 (18%)

Query: 221  IASLVG-HIFQAT-----VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTP 274
            +AS VG  +FQA      V    ++ +    + E +  AE A  AKS+FLAT+SHEIRTP
Sbjct: 942  VASQVGLTLFQAKLLEFEVKSRQQLADKNKALEEARLAAEIASRAKSEFLATMSHEIRTP 1001

Query: 275  MNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFN 334
            MN V+GM  +L+D  L+  Q+D+V T + SG AL+++IN++LD +K+ESGKLELE   F 
Sbjct: 1002 MNAVIGMTGLLLDMNLNPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEHQPFK 1061

Query: 335  LRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG 394
            LR  +++ L L S ++ +KG+ELA  +    PE ++GD  R RQ++ NL+ N++KFT +G
Sbjct: 1062 LRTCIEESLDLLSARASEKGLELAYIVDPNTPEVMVGDVTRLRQVLVNLLSNAVKFTNQG 1121

Query: 395  HIFVTVY--LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKS 452
             + V+V   L+++   S+    E + S+ ++S  P+ +                      
Sbjct: 1122 EVIVSVTSSLIQDSAQSLISSEEKNESQPSISP-PIYE---------------------- 1158

Query: 453  SSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 512
                   +  +V+DTG GIP +   R+F  F QV  S +R +GGTG+GL+IS+ L   M 
Sbjct: 1159 -------VQFAVKDTGIGIPPDRMHRLFKAFSQVDASTTRQYGGTGLGLAISQRLSEMMG 1211

Query: 513  GEIGFVS---------------------------IPNI---GSTFTFTAVFGNGSSTSNE 542
            G++  VS                           IP +   GS F FT       ++ ++
Sbjct: 1212 GKMWVVSWVKPLEESSNSQSLISSITGNPPPSFDIPRLDITGSIFYFTINSSAIETSLSD 1271

Query: 543  HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLS 599
              + Q+          F G + L+V+   I   V    ++  G++  V     D L+C+ 
Sbjct: 1272 EFADQL----------FTGKQILIVENHGINQTVITRQVKAWGMKPLVAKTGIDALKCIQ 1321

Query: 600  QIASGSKIINMILVEQEVWEKD----TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR- 654
            +  +    I+++++   + + D         L   +L +     Q    +L N  S++  
Sbjct: 1322 ENPN----IDLVIIGINLPDIDEIELARKIRLLEKDLSRNHPDRQPVHLVLFNYASNTNI 1377

Query: 655  -ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL---------- 703
                    ++    + KPL+ S    +L +       GN       S+ L          
Sbjct: 1378 VKRIERTNINCAGFVNKPLKQSQFYNTLVQIFA----GNEIIEHSSSLKLTDESGPLNPP 1433

Query: 704  -RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 762
              H  L  +IL+ +DN  N KVA   L+R G        G +  + L     +D   MD+
Sbjct: 1434 QNHAAL--RILLAEDNVTNQKVATKLLQRLGYRADIAGNGVEVLDAL-KRQPYDVVLMDV 1490

Query: 763  QMPEMDGFEAT-KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 821
            QMP+MDG EA+ +I +E     + R ++                 I+AMTA+ ++   E 
Sbjct: 1491 QMPQMDGLEASRRICKEYGEGSDGRQKKPW---------------IIAMTANAMRGDREM 1535

Query: 822  CLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852
            CL +GMD YV+KP   E+L + +++  P  P
Sbjct: 1536 CLEAGMDDYVTKPVRREELAQALAKCQPLYP 1566


>gi|417318936|ref|ZP_12105494.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus
           10329]
 gi|328474126|gb|EGF44931.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus
           10329]
          Length = 932

 Score =  242 bits (618), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 183/607 (30%), Positives = 290/607 (47%), Gaps = 108/607 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY++T + S   L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDYLQTIEKSANNLL 340

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+E+GKL LE + F+ R  L++V++L +  + +KG+E+ + +  ++P  L
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +QI+TNL+GNSIKFTE+G+I V+V +  +  DS+E++                
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQ---------------- 444

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                             V DTG GI    Q+++F  F Q   S
Sbjct: 445 --------------------------------FMVRDTGIGISERQQAQLFQAFSQADAS 472

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT             NS +M 
Sbjct: 473 ISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRL----------NSTEM- 521

Query: 550 NQPNSVSSEFQ---GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
             P S   E +   G + L+V+P    A V++  + + GI V   S     L +      
Sbjct: 522 --PMSDLIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRS----SLPENEEHYD 575

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLG----CGFQSKLFLLANSISSSRANTSTDGV 662
            + + L   + +++ +  +  ++   +++      G  S    LA+ I +          
Sbjct: 576 YVLLNLAANQTYDEQSVAA--WIEQAKRMAPSVIMGTPSTELALADQIMTEHQ------- 626

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
                + KPL    L  SL        +        P  +     L   +L VDDN  NL
Sbjct: 627 --IQCLTKPLSRRKLLQSLINEHVEAPQA----ITAPVETEESERLPLTVLAVDDNPANL 680

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
           K+ +A LK     V     G++A   L    ++D  FMDIQMP MDG  A + I+E+E N
Sbjct: 681 KLISALLKERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGVTACQNIKELELN 739

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
            N                     P++A+TA  +    +  L +GMD Y++KP E   L +
Sbjct: 740 KN--------------------TPVIAVTAHAMAGERDRLLAAGMDDYLTKPIEEHVLQQ 779

Query: 843 EVSRFFP 849
            +  + P
Sbjct: 780 VLVHWNP 786


>gi|34496645|ref|NP_900860.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC
           12472]
 gi|34330304|gb|AAQ58865.2| probable sensor/response regulator hybrid [Chromobacterium
           violaceum ATCC 12472]
          Length = 1105

 Score =  242 bits (618), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 181/625 (28%), Positives = 286/625 (45%), Gaps = 103/625 (16%)

Query: 233 VNRIAKVEEDYH-GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 291
           +NR   ++ D    + E K+ AEAA  AK+ FL+ +SHEIRTPMN VLG+  +L    L 
Sbjct: 366 INRDITIQHDIETALRESKENAEAASRAKANFLSNMSHEIRTPMNAVLGLAYLLEKHGLP 425

Query: 292 VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 351
               D V   + +G++L ++IN++LD +K+E+G LE+E  SF L  +LD++ ++ S    
Sbjct: 426 AEALDLVHKIRVAGRSLQAIINDILDFSKIEAGNLEIEQASFRLADVLDNLSTIMSASVG 485

Query: 352 DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 411
           ++ +EL +    +  + L GD  R  Q++ NL  N+IKFTE GH+ V++  +E       
Sbjct: 486 NRDIELIIAPPPQDIDYLRGDALRLEQVLINLTSNAIKFTEHGHVKVSIQPLE------- 538

Query: 412 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 471
                                               SP +      + L  +VEDTG GI
Sbjct: 539 -----------------------------------ASPSQ------VRLRFAVEDTGIGI 557

Query: 472 PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 531
           P   Q  +F PF Q   S +R  GGTG+GL+IS+ LV  M GEIG  S P  GS F FT 
Sbjct: 558 PKPKQRELFRPFTQADASTTRRFGGTGLGLAISQRLVALMGGEIGLYSEPGQGSAFWFTL 617

Query: 532 VFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 591
            F                      S E   +  L+ D  PI  +        LG +V  V
Sbjct: 618 RFPREQGI-------------RLSSPEMADLNVLIADDNPIARETLGVTASELGWKVRSV 664

Query: 592 SDQLQCLSQIAS---GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 648
                 + ++ +   G + +++++++   W+            +R+   G +  + L+A 
Sbjct: 665 ESGRLAVEKVMAMLDGDQAVDVVVLD---WKMPDMDGLAAAQAIRQACRGKRMPIILMAT 721

Query: 649 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH--L 706
           + S            +  V+ KP+  S L  ++ RA+        R    P   ++H   
Sbjct: 722 AYSREVLQAEPAAELVTEVLNKPVTPSGLYNAVARAL--------RPQTAPPPQIQHGNR 773

Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQMP 765
           L G ++L+VDD+++N +VA    +  GA+V     GK+A + L +   + D   MD+QMP
Sbjct: 774 LQGLRLLVVDDSDINREVAQRIFEDEGASVALANDGKEALDWLGLHGGEVDIVLMDVQMP 833

Query: 766 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 825
            MDG+EAT+ IR                       +  H+P++A+TA    A  +    +
Sbjct: 834 VMDGYEATRAIRATP--------------------ALAHLPVVALTAGAFLAQQDAAREA 873

Query: 826 GMDGYVSKPFEAE----QLYREVSR 846
           GM  Y++KPF+ E    QL R   R
Sbjct: 874 GMSDYIAKPFDVEIAIGQLRRLAGR 898


>gi|158333448|ref|YP_001514620.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158303689|gb|ABW25306.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 755

 Score =  242 bits (618), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 184/602 (30%), Positives = 284/602 (47%), Gaps = 90/602 (14%)

Query: 260 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
           K  FLA +SHEIRTPMNGV+GM  +L+DTEL   QQ+Y  T + SG +L++LIN++LD +
Sbjct: 236 KDDFLAMMSHEIRTPMNGVIGMTGLLLDTELTPQQQEYTETIRKSGDSLLTLINDILDYS 295

Query: 320 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
           K+E+GKL+LE  +FN+R  ++D L L + +   K +ELA  +   VP+ ++GD  R RQI
Sbjct: 296 KIEAGKLDLEKQAFNVRVCVEDALELVASRVGPKEIELAGVVEPDVPQAILGDVTRLRQI 355

Query: 380 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
           + NL+GN+IKFT+ G + V V                                       
Sbjct: 356 LVNLLGNAIKFTQSGEVVVNV--------------------------------------- 376

Query: 440 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
                 S  PF + +  L  L  +V DTG GIP E Q+R+F  F QV  S +R  GGTG+
Sbjct: 377 ------SAEPFAADTP-LYELSFAVRDTGMGIPAERQNRLFKSFSQVDSSTTRKFGGTGL 429

Query: 500 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 559
           GL I K L   M G I   S    GSTF FT       +   E  +    + P   +   
Sbjct: 430 GLVICKRLSELMGGRIWVESEEGQGSTFAFTI-----QAEETEDTTVLAQSLP---AVTL 481

Query: 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE 619
           +  + L+VD      +V     +   ++ +V +   + L  +       ++ +++ ++ E
Sbjct: 482 KDKRVLLVDDNDTNQRVLTLQTESWKMKPQVAASGYEALGLLEHAGP-FDIAILDMQMPE 540

Query: 620 KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAA 679
            D          +R    G    + +L  SI  +       G+   + + KP++ S L +
Sbjct: 541 MD---GLTLAQKIRSHPRGVNFPMVML-TSIGQAPDLAHHKGL-FSAWLNKPIKQSQLYS 595

Query: 680 SLQRAMGVGNKGNIR---NWELPS-MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAA 735
           +L +++  GN+   +     +L + M+ +H L   KIL+ +DN VN K+A   L + G  
Sbjct: 596 ALVKSL-TGNEVKTQKSTTLQLDTEMADQHPL---KILLAEDNPVNQKLAVLILAKMGYR 651

Query: 736 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIE 795
              V  G +  + L     +D   MD+ MPEMDG  AT  I                   
Sbjct: 652 PDVVGNGLEVLQAL-KRQSYDVILMDVNMPEMDGLTATTHI------------------- 691

Query: 796 AYENVSNFHVP-ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIPDR 854
            Y+++     P I+AMTA+ +Q   E+CL  GMD YV+KP   ++L   +    P   + 
Sbjct: 692 -YQSIMPEERPRIIAMTANAMQGDREKCLDVGMDDYVTKPINIQELVVALENSEPQTTES 750

Query: 855 SP 856
            P
Sbjct: 751 QP 752


>gi|395761501|ref|ZP_10442170.1| multi-sensor hybrid histidine kinase [Janthinobacterium lividum
           PAMC 25724]
          Length = 966

 Score =  242 bits (618), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 190/603 (31%), Positives = 285/603 (47%), Gaps = 99/603 (16%)

Query: 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 318
           AKS FLAT+SHEIRTPMNGVLGM ++L+ + L   Q+ Y    Q SG+ L+ +IN++LD 
Sbjct: 298 AKSAFLATMSHEIRTPMNGVLGMTELLLASALSPQQRHYTSMVQRSGQNLLVIINDILDF 357

Query: 319 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 378
           +K+E+GKL +E + FN R +LDD+  +F+ +++ K + L   I+  +P  + GDP R RQ
Sbjct: 358 SKIEAGKLSVEYIRFNFRELLDDIEHVFTPQAEAKNISLEFDIAFDIPIAICGDPYRLRQ 417

Query: 379 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 438
           II NL+GN+IKFTE G + V V +  E    + +  E+       +G  V++   + + F
Sbjct: 418 IIVNLLGNAIKFTETGKVTVKVAVCSEDAPGVGLRFEVHD-----TGIGVSNEAQA-RIF 471

Query: 439 KTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 497
           ++F+Q DGST                                           +R HGGT
Sbjct: 472 ESFSQADGST-------------------------------------------TRKHGGT 488

Query: 498 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS 557
           G+GL+ISK LV  M G IG  +    GS F F   F      S++         P+    
Sbjct: 489 GLGLTISKQLVELMGGTIGVDNALTQGSIFWFEVNFDKRRVDSDD---------PSFNLK 539

Query: 558 EFQGMKALVVDPRP-IRAKVSR----YHIQRLGIQVEVVSDQLQCLSQIASGSKIINMIL 612
             +G++AL+VD  P  RA + R    +HI  +    +  SD L+ L   A       + L
Sbjct: 540 TTRGLRALIVDHTPATRAVLERQLASWHI--VSDSADTASDCLRKLRAAAQAGTPYAVAL 597

Query: 613 VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV-----SIPSV 667
           ++ E+       S L +    K        L      +  S   T+ D V      +   
Sbjct: 598 LDMEL----PRTSGLALAATIK-----SDPLLAELKLLLLSTQRTAADPVQRREAGVAFQ 648

Query: 668 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH--LLLGRKILIVDDNNVNLKVA 725
           ++KP R   L   +      G+   +        ++RH      R++L+ +DN+VN++VA
Sbjct: 649 LIKPARECDLFDCIVTPPRAGDSLRLVAPHAARPAVRHPGRRQRRRVLLAEDNHVNVEVA 708

Query: 726 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785
            A L   G  VVC   G++A +       FD   MD QMP MDGF AT  IR  E     
Sbjct: 709 LAMLDSLGLDVVCARNGEEALQAAQ-AEDFDLILMDCQMPVMDGFAATAEIRRHEQQC-- 765

Query: 786 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 845
               G   +          +PI+A+TA+ +Q   E CL +GMD Y+SKPF  + L   ++
Sbjct: 766 ----GHARV----------LPIVAITANALQGDREACLAAGMDDYLSKPFTQQDLGHTIA 811

Query: 846 RFF 848
           R+ 
Sbjct: 812 RWI 814


>gi|238786285|ref|ZP_04630227.1| Signal transduction histidine-protein kinase barA [Yersinia
           bercovieri ATCC 43970]
 gi|238712808|gb|EEQ04878.1| Signal transduction histidine-protein kinase barA [Yersinia
           bercovieri ATCC 43970]
          Length = 911

 Score =  242 bits (618), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 179/609 (29%), Positives = 286/609 (46%), Gaps = 119/609 (19%)

Query: 251 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 310
           K+A+ A   KS+FLA +SHE+RTP+NGV+G     + T L  TQ DY++T Q S   L+ 
Sbjct: 274 KRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLTPTQTDYLQTIQRSANNLLC 333

Query: 311 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 370
           +IN+VLD +K+E+ KL LE + F+LR+ LD+V+ L +  + +KG+EL ++I++ VPE ++
Sbjct: 334 IINDVLDFSKLEAEKLILEHIPFSLRSTLDEVIILLAHTAHEKGLELTLHINNDVPEQVV 393

Query: 371 GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 430
           GD  R +QI+TNL+GN+IKFTE+G+I + V        + +V T                
Sbjct: 394 GDAMRLQQIVTNLLGNAIKFTEQGNIDILV--------TAQVLT---------------- 429

Query: 431 RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 490
                                   A  + L+V ++DTG GI    Q+++F  F Q   SI
Sbjct: 430 ------------------------AQRVTLVVEIQDTGIGISESQQAQLFQAFRQADASI 465

Query: 491 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ---- 546
           SR HGGTG+GL I++ LV  M G+I F+S  + GSTF F        + S          
Sbjct: 466 SRRHGGTGLGLVITERLVKEMGGDISFLSQVDRGSTFKFHLTLDLNETLSYRQPDMSYLE 525

Query: 547 -------QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS 599
                  + N      + +   +  L +   P  A++   H   L + V +       + 
Sbjct: 526 GKTLAYIERNASAARAALDILSITPLQITHSPTLAQLPVQHYDFLLVGVPIPFRNNMAVH 585

Query: 600 QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTST 659
           Q     K++  + + + V     S S +    L++LG         L   +SS+R     
Sbjct: 586 Q----DKLVAAMKISERVILALPSQSQVEAEQLKQLGAK-----ACLIKPLSSNRL---- 632

Query: 660 DGVSIPSVIM-KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
               IP  +  +PL  S++    ++ + +  K                     ++ VDDN
Sbjct: 633 ----IPLFLSEEPLEVSLVEEQAEKPLKLPFK---------------------VMAVDDN 667

Query: 719 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778
             NLK+    L+   A  V  + G KA       +  D   MDIQMPE+DG  A++II +
Sbjct: 668 PANLKLIGTLLEEQVAETVLCDSGAKAIA-YARENTLDIILMDIQMPEIDGIRASEIIHQ 726

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
           M H+ +                     PI+A+TA  ++   E+ L+ GM  Y++KP +  
Sbjct: 727 MSHHLDT--------------------PIIAVTAHAVRGQQEQLLKLGMADYLAKPIDEA 766

Query: 839 QLYREVSRF 847
           +L + +SR+
Sbjct: 767 RLIQALSRY 775


>gi|373954442|ref|ZP_09614402.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|373891042|gb|EHQ26939.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 936

 Score =  242 bits (617), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 184/605 (30%), Positives = 297/605 (49%), Gaps = 101/605 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           ++ AE A+ AKS FLAT+SHEIRTPMNGVLGM  +L +T L+  Q++YV T + SG+ L+
Sbjct: 409 REDAEKANQAKSVFLATMSHEIRTPMNGVLGMASLLEETTLNNEQREYVSTIKNSGETLL 468

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+I++VLD +K+ESGKL+L+   FNLR  +++V+ +FSGK    G++L   I   VP  +
Sbjct: 469 SVISDVLDFSKIESGKLDLDPHQFNLRQCIEEVMDIFSGKVARIGLDLVYQIGYEVPAHI 528

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD-SIEVETELSSSKNTLSGYPV 428
           I D  R +Q++ NL+GN+IKFT KG +F+ V L+    D S+E+  E+   K+T  G P 
Sbjct: 529 IADSLRLKQVLINLVGNAIKFTSKGEVFLGVSLLSRTDDHSLELAFEV---KDTGIGIP- 584

Query: 429 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 488
             R    + FK F+                                          Q+  
Sbjct: 585 --RDKLPRLFKAFS------------------------------------------QIDS 600

Query: 489 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 548
           S +R +GG+G+GL+I + LV  M+G+I   S  ++G+TF F        S   E + Q +
Sbjct: 601 STTRRYGGSGLGLAICERLVHLMEGQITVESQLDLGTTFRF--------SIKAEESQQDI 652

Query: 549 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII 608
                 V +  +G   LVVD      K+ +  +++  +   + +   + L+ +A     I
Sbjct: 653 RLHVPYVLAGHEGKVILVVDDNQTNRKILQVQLEQWKLVPLMAASASEALTLLAKHR--I 710

Query: 609 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 668
           +++L + ++ + D       + N         +K+ ++  S     A T   G+   +V+
Sbjct: 711 DLVLTDMQMPDMDGIDFAAIIKNKN-------AKMPVVLLSSRGDEAKTKYPGL-FTAVL 762

Query: 669 MKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM-----SLRHLLLGRKILIVDDNNVNLK 723
            KP++   L   +Q ++    +  +     P +     + +H L    IL+ +DN +N K
Sbjct: 763 NKPVKQQQLGRVIQTSLQQNPEPEVHQQSTPVLLTPEFAEKHPL---NILVAEDNLINQK 819

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR--EMEH 781
           +    L + G      + G +    L   H+FD   MDIQMP MDG EAT+IIR  ++E 
Sbjct: 820 LILRILSKLGYEATVAQNGLEVIA-LTELHKFDVILMDIQMPMMDGLEATQIIRSSKIEQ 878

Query: 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
            F                       I+AMTA+ +    E+CL++GMD Y+SKP   E   
Sbjct: 879 PF-----------------------IIAMTANAMPEDKEDCLKAGMDDYLSKPIHLESFL 915

Query: 842 REVSR 846
             +S+
Sbjct: 916 TALSK 920


>gi|428224217|ref|YP_007108314.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
 gi|427984118|gb|AFY65262.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
          Length = 957

 Score =  242 bits (617), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 194/645 (30%), Positives = 298/645 (46%), Gaps = 99/645 (15%)

Query: 209 LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 268
           L AI+  +GI +  + V  + Q T  R  ++ E    +   +  AEAA+ AKS FLA +S
Sbjct: 271 LAAIADQVGIALAQAQV--LAQETRQR-QEMTEKNAALEHARYIAEAANHAKSSFLAVMS 327

Query: 269 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 328
           HEIRTPMN V+GM D+L+DT L   Q+D+ +T + SG+AL+++IN++LD +K+ESGKL++
Sbjct: 328 HEIRTPMNAVIGMTDLLLDTSLTPQQEDFAQTIRTSGEALLAIINDILDFSKIESGKLDI 387

Query: 329 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 388
           +   F+LR+ ++  L L + K+ +K +EL  +I   VP  L+GD  R RQI+ NL+GN++
Sbjct: 388 QNHPFDLRSCIESALDLLAPKAAEKQLELVYFIEPHVPTELVGDEVRLRQILVNLVGNAV 447

Query: 389 KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 448
           KFT +G + + V                       +G             ++   D    
Sbjct: 448 KFTAEGFVAIAV-----------------------TG-------------RSLTPDSQA- 470

Query: 449 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 508
              SS A L  +  +V+DTG GIP +   R+F PF QV     R +GGTG+GL IS+ L 
Sbjct: 471 ---SSEAPLYTIRFTVQDTGIGIPSDRLDRLFRPFSQVDSFTGRQYGGTGLGLVISQRLS 527

Query: 509 GRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVD 568
             M G I   S    GSTF  + +     +       + +            G + L+VD
Sbjct: 528 EMMGGRIWVDSEVEQGSTFYVSVLMAARPAAPAPGRERPLA-----------GKRLLLVD 576

Query: 569 PRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLF 628
              +         +  G+ V  V   +  L+++A+G +  ++ L++  + + D     L 
Sbjct: 577 DHALVRHSLTTDAEAWGMGVCAVDSGVAALARLAAGDR-FDVALIDHTLPDTDGHSLALR 635

Query: 629 VNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV---------IMKPLRSSMLAA 679
           +                 A+   +         + IP V         + KP+R + L  
Sbjct: 636 MRE-------------DYADQPLALVLLAPLGNLPIPEVDERALFQAEVHKPVRQAQLYG 682

Query: 680 SLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KILIVDDNNVNLKVAAAGLKRYGAAVV 737
            L   +             P       L  R  +IL+ +DN VN KVA   LKR G +  
Sbjct: 683 VLSEVLSEAPDPIASPAPPPLAPAADALPPRSLRILLAEDNLVNQKVALHLLKRLGYSAD 742

Query: 738 CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAY 797
               G++A E L     +D   MDIQMPEMDG  AT   R +  +F  + R         
Sbjct: 743 VAHNGREALESLQ-RRAYDLVLMDIQMPEMDGLSAT---RRICADFPAQERPR------- 791

Query: 798 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                    I+A+TA+ +Q   E+CL +GMD Y SKP    +L R
Sbjct: 792 ---------IVAVTANAMQGDREQCLAAGMDDYTSKPLRIAELMR 827


>gi|431928032|ref|YP_007241066.1| signal transduction histidine kinase [Pseudomonas stutzeri RCH2]
 gi|431826319|gb|AGA87436.1| signal transduction histidine kinase [Pseudomonas stutzeri RCH2]
          Length = 914

 Score =  242 bits (617), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 187/614 (30%), Positives = 304/614 (49%), Gaps = 100/614 (16%)

Query: 234 NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT 293
           +RI  ++E+ +   E  ++A + + AKS+FLA +SHEIRTP+NGVLGML +L +T LD +
Sbjct: 383 DRINLLKEEGYRSREAAERAASENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPLDRS 442

Query: 294 QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDK 353
           QQ Y+ T  +SG +L+++IN++LD A++ SGKL LE + F+L  ++ + + LF+ +S +K
Sbjct: 443 QQFYLDTISSSGNSLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQSLEK 502

Query: 354 GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 413
            + L V +   VP  + GDP R +QI+ NL+ N++KFTE GH+ + V             
Sbjct: 503 QLSLHVGLEPGVPRRIRGDPTRLKQILMNLLSNALKFTEHGHVLLEV------------- 549

Query: 414 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 473
               S + T  G P                                L+  V D+G G+  
Sbjct: 550 ----SCRQTPDGGP-------------------------------RLVFCVSDSGIGMRQ 574

Query: 474 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533
           E  +++F  F Q   S +R +GG+G+GL+ISK LV  M G I   S P  GS F F    
Sbjct: 575 EVLAQLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSAPGRGSRFCFEIPL 634

Query: 534 GNGSSTSNEHNSQQMNNQPNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 592
              +   +   +Q +  +P  ++S+  QG++AL             + ++R G++ E   
Sbjct: 635 RTATDVEDPL-TQLLAGRPALLASQDAQGLEAL------------SHLLRRWGMRTE--- 678

Query: 593 DQLQCLSQIASGSKIINM----ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 648
              +CL+       + +     +LV    W    S    ++  LR      Q ++ +L +
Sbjct: 679 ---RCLTPDRLPDYLADFTAPPLLVLLAPWPGSPSQ---WLERLRPYLEANQ-RMLMLYS 731

Query: 649 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL 708
            I        T  + + S+ + PL+S+ L  +LQ    +  +   ++ E    S+  L  
Sbjct: 732 PIHEP--PPLTPDLRLISLAL-PLQSAPLREALQ---ALYEREPAQSAETDKASIAPLQS 785

Query: 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQMPEM 767
              IL+ +DN VN  V    LK+ G AV   + G++A +L    P       MD +MPE+
Sbjct: 786 EPCILVAEDNPVNQMVVRGLLKKRGYAVQLADNGRQAVDLYRRDPDAVQLILMDCEMPEL 845

Query: 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
           DGFEA++ IR++E          +  ++A        VPI+A+TA V+    +  L SGM
Sbjct: 846 DGFEASRQIRKLE---------ADQQLQA--------VPIIAVTAHVLAEHRQRGLESGM 888

Query: 828 DGYVSKPFEAEQLY 841
           D ++ KP E+ QLY
Sbjct: 889 DEFIGKPLESRQLY 902


>gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
 gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
          Length = 1353

 Score =  242 bits (617), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 200/653 (30%), Positives = 301/653 (46%), Gaps = 123/653 (18%)

Query: 209  LLAISTSIGILVI-ASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATV 267
            L A++  +GI +  A L+ H  Q       + +E    + + + +AE A+ AKS+FLAT+
Sbjct: 776  LEAVAAQVGIAIAQAELLRHEQQQRQLLAQQNQE----LEQARLQAELANRAKSEFLATM 831

Query: 268  SHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 327
            SHEIRTPMN VLG  ++L+DT L+  Q+D+++T   +G+AL+++IN++LD +K+ESGKL 
Sbjct: 832  SHEIRTPMNAVLGFTNLLLDTPLNEQQRDFLQTLHQAGEALLTIINDILDFSKIESGKLV 891

Query: 328  LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 387
            LE   F++R  ++DVLSL + K+Q+K +EL    +   P  + GD  R RQI+ NL+GN 
Sbjct: 892  LEQQPFDVRECVEDVLSLLASKAQEKELELLYTCTPETPAQIKGDVTRLRQILVNLVGNG 951

Query: 388  IKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 447
            IKFT +G + V V +++                               K F  F      
Sbjct: 952  IKFTHEGQVAVHVGVLK----------------------------REGKDFLQFQ----- 978

Query: 448  SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 507
                            V+DTG GIP +   R+F PF QV  S +R +GGTG+GL ISK L
Sbjct: 979  ----------------VQDTGIGIPRDRLDRLFKPFSQVDASTTREYGGTGLGLVISKRL 1022

Query: 508  VGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVV 567
               M G++   S    G+TFTFT +   G          Q    P  V    +G + LV+
Sbjct: 1023 CELMGGDMSVESTEGQGTTFTFT-ILAEG----------QKPYVPPKVHPALEGKRVLVI 1071

Query: 568  DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL 627
            D        SR ++  L          L     +  G     ++L     W  D +V  L
Sbjct: 1072 DDN----AASRENLCTL----------LHNWGMVPIGYSDPRLVLEAAPPW--DLAVIDL 1115

Query: 628  FVNNLRKLGCG--------FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAA 679
             +  +  L           F  +  +L   +S     T++    I + + KP+R   L  
Sbjct: 1116 NMPQMTGLQLAERLQSEPNFNQQPMILLTPLSW--LETASRKELITAHVPKPIRPLTLRQ 1173

Query: 680  SLQRAMGVGNKGNIRNWELPSMSLR--HLLLGR----KILIVDDNNVNLKVAAAGLKRYG 733
            +L R +   +         P+++     L LG     +IL+ +DN VN KVA   LKR G
Sbjct: 1174 TLIRTLSSESATQ------PALTKTGIDLNLGNRFPLRILLAEDNAVNQKVALHILKRMG 1227

Query: 734  AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVS 793
                    G +  E L     +D   MD+QMP+MDG E T+ I            +   S
Sbjct: 1228 YRADVAANGLEVLEALQ-QRPYDVILMDVQMPKMDGLETTERI----------CAQWPPS 1276

Query: 794  IEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
               +         I+AMTA+ +    E C  +GMD Y+SKP + E L   ++R
Sbjct: 1277 QRPW---------IIAMTANALAGDRERCFAAGMDDYISKPIKIEALAAALNR 1320


>gi|401765013|ref|YP_006580020.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
           cloacae ENHKU01]
 gi|400176547|gb|AFP71396.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
           cloacae ENHKU01]
          Length = 919

 Score =  242 bits (617), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 183/614 (29%), Positives = 288/614 (46%), Gaps = 124/614 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + +EL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRGTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA-------VFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F            +G  TS  
Sbjct: 475 ISRRHGGTGLGLVITQRLVNEMGGDISFHSQPNRGSTFWFYINLDLNPNALTDGPVTSCL 534

Query: 543 HNSQQMNNQPNSVSSEFQGMKALVVDPRPI-------RAKVSRYHIQRLGIQVEVVSDQL 595
           +  +    +PN+ +++   +  L   P  +          V  Y I  +GI V    +  
Sbjct: 535 NGKRLAYVEPNAAAAQCT-LDILSTTPLEVVYSPTFSALAVEHYDILLMGIPVTFTGE-- 591

Query: 596 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 655
                          + ++QE   K  S++      L  L C  Q     L N       
Sbjct: 592 ---------------LTMQQERLAKAASMTDYL---LLALPCHAQINAEELKN------- 626

Query: 656 NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIV 715
               DG +  + ++KPL ++ L  +L     +          LP ++     L   ++ V
Sbjct: 627 ----DGAA--ACLLKPLTATRLLPALTEYCRLSQHA------LPLINDEQ-KLPMSVMAV 673

Query: 716 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI 775
           DDN  NLK+    L+     V     G +A E      QFD   MDIQMP MDG  A ++
Sbjct: 674 DDNPANLKLIGVLLEDQVQHVELCTSGTQAVE-QAKQMQFDLILMDIQMPGMDGIRACEL 732

Query: 776 IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
           I ++ H                        P++A+TA  +    E+ L +GM+ Y++KP 
Sbjct: 733 IHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPI 772

Query: 836 EAEQLYREVSRFFP 849
           + E+L+  + R+ P
Sbjct: 773 DEEKLHNLLLRYKP 786


>gi|419830886|ref|ZP_14354371.1| his Kinase A domain protein [Vibrio cholerae HC-1A2]
 gi|419834571|ref|ZP_14358025.1| his Kinase A domain protein [Vibrio cholerae HC-61A2]
 gi|422308386|ref|ZP_16395536.1| his Kinase A domain protein [Vibrio cholerae CP1035(8)]
 gi|422918285|ref|ZP_16952599.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-02A1]
 gi|423823183|ref|ZP_17717191.1| his Kinase A domain protein [Vibrio cholerae HC-55C2]
 gi|423857145|ref|ZP_17720994.1| his Kinase A domain protein [Vibrio cholerae HC-59A1]
 gi|423884420|ref|ZP_17724587.1| his Kinase A domain protein [Vibrio cholerae HC-60A1]
 gi|423998707|ref|ZP_17741957.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-02C1]
 gi|424017608|ref|ZP_17757434.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-55B2]
 gi|424020525|ref|ZP_17760306.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-59B1]
 gi|424625906|ref|ZP_18064365.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-50A1]
 gi|424630390|ref|ZP_18068672.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-51A1]
 gi|424634437|ref|ZP_18072535.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-52A1]
 gi|424637516|ref|ZP_18075522.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-55A1]
 gi|424641420|ref|ZP_18079300.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-56A1]
 gi|424649492|ref|ZP_18087152.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-57A1]
 gi|443528411|ref|ZP_21094447.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-78A1]
 gi|341635330|gb|EGS60048.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-02A1]
 gi|408011083|gb|EKG48919.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-50A1]
 gi|408017207|gb|EKG54725.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-52A1]
 gi|408022026|gb|EKG59255.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-56A1]
 gi|408022461|gb|EKG59670.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-55A1]
 gi|408031262|gb|EKG67898.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-57A1]
 gi|408053462|gb|EKG88476.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-51A1]
 gi|408617656|gb|EKK90769.1| his Kinase A domain protein [Vibrio cholerae CP1035(8)]
 gi|408620659|gb|EKK93671.1| his Kinase A domain protein [Vibrio cholerae HC-1A2]
 gi|408634291|gb|EKL06554.1| his Kinase A domain protein [Vibrio cholerae HC-55C2]
 gi|408639749|gb|EKL11556.1| his Kinase A domain protein [Vibrio cholerae HC-59A1]
 gi|408640070|gb|EKL11871.1| his Kinase A domain protein [Vibrio cholerae HC-60A1]
 gi|408648704|gb|EKL20039.1| his Kinase A domain protein [Vibrio cholerae HC-61A2]
 gi|408852149|gb|EKL91993.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-02C1]
 gi|408858708|gb|EKL98380.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-55B2]
 gi|408866723|gb|EKM06100.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-59B1]
 gi|443453230|gb|ELT17061.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-78A1]
          Length = 916

 Score =  242 bits (617), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 196/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 317

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 318 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 509

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     V +
Sbjct: 510 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAVPE 558

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 559 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 610

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 611 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLTNTSLPKPQADKLPLC- 655

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 656 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 713

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 714 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 753

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 754 LTKPIE-EHILQQVLVHWSP 772


>gi|117926684|ref|YP_867301.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
 gi|117610440|gb|ABK45895.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
          Length = 2654

 Score =  242 bits (617), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 175/616 (28%), Positives = 301/616 (48%), Gaps = 96/616 (15%)

Query: 245  GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
             + + K+ A+AA+ AKS FLA +SHEIRTPMN ++GM  + + T+L+  Q++Y+   + S
Sbjct: 1826 AIQQAKEIADAANQAKSDFLANMSHEIRTPMNAIIGMSHLALQTDLNGRQRNYITKVKRS 1885

Query: 305  GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
             +AL+ +IN++LD +K+E+GKL +E + F L  +LD++ +L   K+++KG+EL   +   
Sbjct: 1886 AEALLGIINDILDFSKIEAGKLTMEFIDFRLEDVLDNLSNLVGLKAEEKGLELHFSLPPG 1945

Query: 365  VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
            +   L GDP R  Q++ NL  N++KFT  G + V V  +E   + I+             
Sbjct: 1946 LHTALKGDPLRLGQVLINLGNNAVKFTAHGDVVVKVQQLERTTERIK------------- 1992

Query: 425  GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                               L  SV+D+G G+  E +  +F  F 
Sbjct: 1993 -----------------------------------LYFSVKDSGIGMTPEQKGLLFKSFS 2017

Query: 485  QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
            Q   S +R  GGTG+GL+ISK LV  M+GEI   S+P  GS F F+A FG G     E  
Sbjct: 2018 QADASTTRKFGGTGLGLAISKRLVEMMEGEIDVDSVPEQGSDFHFSAWFGLGEVRGEE-- 2075

Query: 545  SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
                      V  +   +  LVVD      ++     Q  G +V+        L+++ + 
Sbjct: 2076 -------TLRVERDLANLHLLVVDDNSTAREILAEMAQSFGFRVDTAESGAAALAKVEAA 2128

Query: 605  SKI---INMILVEQEVWEKD---TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 658
            + +   + ++L++ ++ + D   T+ +    ++L++L       + ++  +     A  +
Sbjct: 2129 AALNDPVQVVLMDWKMPDMDGLQTARAMQHNDDLQEL------PMVIMVTAYGREEAVQA 2182

Query: 659  TDGVSIPSVIMKPLRSSMLAASLQRAMG----VGNKGNIRNWELPSMSLRHLLLGRKILI 714
              GV +   + KP+  S L  ++  A+G     G + + R  E     +  LL G K+L+
Sbjct: 2183 ATGVELKGFLTKPVSPSTLLDAVMGALGREGVSGRRAHERQVEESEAII--LLRGAKVLL 2240

Query: 715  VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATK 774
            V+DN +N ++A   L   G      E G +A + L     FD   MD+QMP MDG+ AT+
Sbjct: 2241 VEDNEINQELALELLANAGILAKLAENGVEALQALQ-REPFDGVLMDVQMPIMDGYTATR 2299

Query: 775  IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
             IR+                 A+++     +P++AMTA+V+ A  E+   +GM  +VSKP
Sbjct: 2300 EIRKQ---------------AAFKD-----LPVIAMTANVMAADLEKAKAAGMQAHVSKP 2339

Query: 835  FEAEQLYREVSRFFPP 850
             +  +++  ++++  P
Sbjct: 2340 IDVREMFTTMAQWIKP 2355


>gi|424660948|ref|ZP_18098195.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HE-16]
 gi|408049820|gb|EKG85009.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HE-16]
          Length = 921

 Score =  241 bits (616), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 196/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 203 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 262

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 263 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 322

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 323 LQTIEKSANNLLAIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 382

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 383 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 427

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 428 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 454

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 455 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 514

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     V +
Sbjct: 515 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAVPE 563

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 564 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 615

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 616 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLTNTSLPKPQADKLPLC- 660

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 661 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 718

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 719 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 758

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 759 LTKPIE-EHILQQVLVHWSP 777


>gi|260365946|ref|ZP_05778436.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|308113209|gb|EFO50749.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 742

 Score =  241 bits (616), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 200/697 (28%), Positives = 324/697 (46%), Gaps = 118/697 (16%)

Query: 170 MYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH- 227
           M+ S +  D    ++ + N  D  R+  +  R + K    L  +   I  + ++    H 
Sbjct: 1   MFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYHV 60

Query: 228 -----IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVL 279
                I QAT +    +E+     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+
Sbjct: 61  EMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVI 120

Query: 280 GMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAIL 339
           G    ++ T+L  +Q DY++T + S   L+++IN++LD +K+E+GKL LE + F+ R  L
Sbjct: 121 GFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESL 180

Query: 340 DDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVT 399
           ++V++L +  + +KG+E+ + +  ++P  L+GDP R +QI+TNL+GNSIKFTE+G+I V+
Sbjct: 181 EEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVS 240

Query: 400 VYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLIN 459
           V +  +  DS+E++                                              
Sbjct: 241 VEMRSQAGDSVELQ---------------------------------------------- 254

Query: 460 LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS 519
               V DTG GI    Q+++F  F Q   SISR +GGTG+GL I++ LV +M GEI   S
Sbjct: 255 --FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 312

Query: 520 IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAKV 576
             + GSTF FT             NS +M   P S   E +   G + L+V+P    A V
Sbjct: 313 RLHQGSTFWFTLRL----------NSTEM---PMSDLIEVELLTGKQLLLVEPNMQAASV 359

Query: 577 SRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 636
           ++  + + GI V   S     L +       + + L   + +++ +  +  ++   +++ 
Sbjct: 360 TQQILSQEGILVTYRS----SLPENEEHYDYVLLNLAANQTYDEQSVAA--WIEQAKRMA 413

Query: 637 ----CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN 692
                G  S    LA+ I +               + KPL    L  SL        +  
Sbjct: 414 PSVIMGTPSTELALADQIMTEHQ---------IQCLTKPLSRRKLLQSLINEHVEAPQA- 463

Query: 693 IRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 752
                 P  +     L   +L VDDN  NLK+ +A LK     V     G++A   L   
Sbjct: 464 ---ITAPVETEESERLPLTVLAVDDNPANLKLISALLKERVETVTACSNGQQAVN-LATE 519

Query: 753 HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA 812
            ++D  FMDIQMP MDG  A + I+E+E N +                     P++A+TA
Sbjct: 520 KKYDLIFMDIQMPLMDGVTACQNIKELELNKD--------------------TPVIAVTA 559

Query: 813 DVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
             +    +  L +GMD Y++KP E   L + +  + P
Sbjct: 560 HAMAGERDRLLAAGMDDYLTKPIEEHVLQQVLVHWNP 596


>gi|94263691|ref|ZP_01287499.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455890|gb|EAT06049.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1211

 Score =  241 bits (616), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 183/608 (30%), Positives = 289/608 (47%), Gaps = 104/608 (17%)

Query: 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ--DYVRTAQASGKALVSLINEVL 316
           +KS+FLA +SHEIRTPMN ++G+  + + ++     +  DY+     S   L++LIN++L
Sbjct: 413 SKSEFLANMSHEIRTPMNAIIGLGQLALKSQPPPPPRLYDYLEKITGSAATLLTLINDIL 472

Query: 317 DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 376
           D +K+E+GKL ++ V F+L  IL+ +  L +G++ +KG+EL   +    P  L+GDP R 
Sbjct: 473 DFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGDPHRL 532

Query: 377 RQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 436
            Q++ NL  N+IKFT++G + ++                          + VAD      
Sbjct: 533 GQVLINLTSNAIKFTQQGEVTIS--------------------------FEVAD------ 560

Query: 437 GFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 496
                            +AD + L V+V DTG G+  E   RIF PF Q   + +R HGG
Sbjct: 561 ----------------PTADPLILRVAVRDTGIGMSPEQIERIFQPFTQADGATTRKHGG 604

Query: 497 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS 556
           TG+GLSI+  LV  + GEI   S P  GSTF+FT + G        H   +       V 
Sbjct: 605 TGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFTCLLGR-------HEPHKALCPLPPV- 656

Query: 557 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK--------II 608
            + +G++ LVVD      +V R  +     +VE      + LS +A  ++        I+
Sbjct: 657 -DLRGLRVLVVDDNATARQVLRQTLASFSFRVEEADSGRRALSLLARAAEEGQPYELVIL 715

Query: 609 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 668
           + ++ E +  E   +++   + + + L       + L A+     R   +  G+     +
Sbjct: 716 DWVMPEFDGLECAAAIAADPLIDPQPL------LILLTAHGREEIREEAAGRGLR--HFL 767

Query: 669 MKPLRSSMLAASLQRAMGV------GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
            KP+  S L  ++    G        ++G  R+ EL S + R  L G ++L+ +DN +N 
Sbjct: 768 TKPVLPSTLYDTIMECFGQEGISRESDRGR-RSDELESAA-REKLAGSRLLVAEDNALNQ 825

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
           +VAA  L   G        G++A E       +D   MDIQMPEMDG++AT  IR +   
Sbjct: 826 QVAAELLAAVGIHCDLANNGREAVEQYR-RQTYDGVLMDIQMPEMDGYQATGAIRALP-- 882

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                             +   VPI+AMTA  +    E+CL +GMD ++ KP EA  LYR
Sbjct: 883 ------------------AGQQVPIIAMTAHALAGEREKCLAAGMDEHIPKPVEANLLYR 924

Query: 843 EVSRFFPP 850
            + R  PP
Sbjct: 925 TLLRLLPP 932


>gi|417825671|ref|ZP_12472259.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HE48]
 gi|340047156|gb|EGR08086.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HE48]
          Length = 927

 Score =  241 bits (616), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 196/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     V +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAVPE 569

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLTNTSLPKPQADKLPLC- 666

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 725 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 764

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 765 LTKPIE-EHILQQVLVHWSP 783


>gi|304399231|ref|ZP_07381098.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB]
 gi|304353285|gb|EFM17665.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB]
          Length = 909

 Score =  241 bits (616), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 188/606 (31%), Positives = 289/606 (47%), Gaps = 115/606 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGVLG    ++ T+L  TQ+DY++T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQLRTTQRDYMQTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LEA+ F LRA LD+ L L +  + DKG+EL V     VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTVVCDSSVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGD  R +QI+ NL+GN+IKFTEKG+I + V   + V+    VE E              
Sbjct: 403 IGDALRLQQILINLIGNAIKFTEKGYIGLRVG--QRVITQSRVELE-------------- 446

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                           + VED+G GI  + Q+++F  F Q   S
Sbjct: 447 --------------------------------IQVEDSGIGISEQQQTQMFQAFRQADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M GEI F S P+ GS F                   Q++
Sbjct: 475 ISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQGSVFVIRV---------------QLD 519

Query: 550 NQPNS-----VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN+     V       +   V+P    A  +   +    +Q++  S+ L+ L      
Sbjct: 520 LNPNAPGMPRVLDALSHARIAYVEPDAYVASAALEMLSATPLQID-YSETLEGLKAPHYP 578

Query: 605 SKIINM-ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
             ++ M + + Q     +  ++ L  +    +     S + LLA+ + +           
Sbjct: 579 LLLMAMPVDISQPELLNERRINGLL-DRADNVLMALPSPMMLLADELKAR---------G 628

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRKILIVDDNNVNL 722
           I   I KP+       SL R + +    + R   ELP  S R   L   ++ VDDN  NL
Sbjct: 629 IDGCIAKPI-------SLTRLLPMLLDLHTRQMSELPP-SPR---LPLTVMAVDDNPANL 677

Query: 723 KVAAAGLKRYGAAVVCVERGKKAT-ELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
           K+  A L+     ++     + A  E    P   D   MDIQMPE+DG  A++IIR +  
Sbjct: 678 KLIGALLEEQVQNILLCSSAEHAIREARQQP--LDVILMDIQMPEIDGIRASEIIRSLPQ 735

Query: 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
           + +                     PI+A+TA  I    E+ +++GM+ Y++KP +  +L 
Sbjct: 736 HAST--------------------PIVAVTAHAIDGEREQLIKAGMNDYLAKPIDESKLR 775

Query: 842 REVSRF 847
           + ++R+
Sbjct: 776 QLLARY 781


>gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
          Length = 1500

 Score =  241 bits (616), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 180/606 (29%), Positives = 288/606 (47%), Gaps = 113/606 (18%)

Query: 248 ELKKKAEAADVA---KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
           ELKK  +AA  +   K +F A+VSHE+RTP+NGV+GML++L +TEL   Q++YV+ A  S
Sbjct: 258 ELKKARDAALESARIKGEFAASVSHELRTPLNGVIGMLELLSNTELTPNQREYVQVACGS 317

Query: 305 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
           G+ L+ LI  +LD +++ESGK +L++V F L+  LDDV+ L + ++Q K +E+   +++ 
Sbjct: 318 GETLLDLIGNILDFSRIESGKFKLDSVDFYLQETLDDVIGLLAAQAQRKDLEIGYVVAEN 377

Query: 365 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
           VP  + GD  R RQI+ NLMGN++KFTE+G + + V L+E+                   
Sbjct: 378 VPLFMRGDATRIRQILINLMGNAVKFTEQGEVSIEVRLLEK------------------- 418

Query: 425 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                         A  + L   V DTG GIPLE  +R+F  F 
Sbjct: 419 -----------------------------KAKKLVLHFEVRDTGIGIPLEFLARVFEAFS 449

Query: 485 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
           Q   S +R +GGTG+GL+I + LV  M G++G  +  + GS F FT           E  
Sbjct: 450 QADSSTTRKYGGTGLGLAICRQLVDLMGGDLGVENNLDKGSLFWFTVPL--------EEM 501

Query: 545 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
                 Q  +  +E  G++ L+V+   +  +         G+      +  Q L  + S 
Sbjct: 502 IMPQAGQALTNKAEVAGLRLLIVEDSTVSRRFLGQTFSSWGMYHGCAENGQQALKMLRSA 561

Query: 605 ---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ---SKLFLLANSISSSRANTS 658
               +  +++LV++               +L+ L    Q     L      I   R    
Sbjct: 562 VAEGRSYDLVLVDEN------------TPDLKGLELAQQIAEDSLIASVKIILMGRQRHP 609

Query: 659 TDGVS----IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL-----LG 709
              +S    + + + KP++ S L  ++  A+        +N E+ S +L   +       
Sbjct: 610 VSDISPLSGVVNYVAKPVQQSSLYNTIITAVK-------QNKEVVSETLSAAIEETEFSD 662

Query: 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
           R++L+V+DN VN +VA   L+R G  V  V  G++A +  M    ++   MD  MP+MDG
Sbjct: 663 RRVLVVEDNRVNQQVAVGMLERLGCRVEVVSNGQEALD-AMSGKVYELVLMDCHMPQMDG 721

Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
           +EAT+ IR  E                        VPI+AMTA+V +   ++C+ +GM+ 
Sbjct: 722 YEATRQIRIRE-------------------AGKKQVPIIAMTANVRKGDSDKCISAGMND 762

Query: 830 YVSKPF 835
           Y+ KP 
Sbjct: 763 YLPKPL 768


>gi|440760670|ref|ZP_20939775.1| BarA sensory histidine kinase ( VarS GacS) [Pantoea agglomerans
           299R]
 gi|436425586|gb|ELP23318.1| BarA sensory histidine kinase ( VarS GacS) [Pantoea agglomerans
           299R]
          Length = 909

 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 188/606 (31%), Positives = 289/606 (47%), Gaps = 115/606 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGVLG    ++ T+L  TQ+DY++T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQLRTTQRDYMQTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LEA+ F LRA LD+ L L +  + DKG+EL V     VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTVVCDSSVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGD  R +QI+ NL+GN+IKFTEKG+I + V   + V+    VE E              
Sbjct: 403 IGDALRLQQILINLIGNAIKFTEKGYIGLRVG--QRVITQSRVELE-------------- 446

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                           + VED+G GI  + Q+++F  F Q   S
Sbjct: 447 --------------------------------IQVEDSGIGISEQQQTQMFQAFRQADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M GEI F S P+ GS F                   Q++
Sbjct: 475 ISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQGSVFVIRV---------------QLD 519

Query: 550 NQPNS-----VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN+     V       +   V+P    A  +   +    +Q++  S+ L+ L      
Sbjct: 520 LNPNAPGMPRVLDALSHARIAYVEPDTYVASAALEMLSATPLQID-YSETLEGLKAPHYP 578

Query: 605 SKIINM-ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663
             ++ M + + Q     +  ++ L  +    +     S + LLA+ + +           
Sbjct: 579 LLLMAMPVDISQPELLNERRINGLL-DRADNVLMALPSPMMLLADELKAR---------G 628

Query: 664 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRKILIVDDNNVNL 722
           I   I KP+       SL R + +    + R   ELP  S R   L   ++ VDDN  NL
Sbjct: 629 IDGCIAKPI-------SLTRLLPMLLDLHTRQMSELPP-SPR---LPLTVMAVDDNPANL 677

Query: 723 KVAAAGLKRYGAAVVCVERGKKAT-ELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
           K+  A L+     ++     + A  E    P   D   MDIQMPE+DG  A++IIR +  
Sbjct: 678 KLIGALLEEQVQNILLCSSAEHAIREARQQP--LDVILMDIQMPEIDGIRASEIIRSLPQ 735

Query: 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
           + +                     PI+A+TA  I    E+ +++GM+ Y++KP +  +L 
Sbjct: 736 HAST--------------------PIVAVTAHAIDGEREQLIKAGMNDYLAKPIDESKLR 775

Query: 842 REVSRF 847
           + ++R+
Sbjct: 776 QLLARY 781


>gi|417086226|ref|ZP_11953462.1| hybrid sensory histidine kinase BarA [Escherichia coli cloneA_i1]
 gi|355350751|gb|EHF99947.1| hybrid sensory histidine kinase BarA [Escherichia coli cloneA_i1]
          Length = 918

 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 286/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S+PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|260899636|ref|ZP_05908031.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308110560|gb|EFO48100.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 932

 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 199/679 (29%), Positives = 314/679 (46%), Gaps = 117/679 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F+ R  L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + +  ++P  L+GDP R +QI+TNL+GNSIKFTE+G+I V+V +  +  DS+E++    
Sbjct: 389 TLKVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQ---- 444

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                                         V DTG GI    Q+
Sbjct: 445 --------------------------------------------FMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRL---- 516

Query: 538 STSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 594
                 NS +M   P S   E +   G + L+V+P    A V++  + + GI V   S  
Sbjct: 517 ------NSTEM---PMSDLIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRS-- 565

Query: 595 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC----GFQSKLFLLANSI 650
              L +       + + L   + +  D    T ++   +++      G  S    LA+ I
Sbjct: 566 --SLPENEEHYDYVLLNLAANQTY--DEQSVTAWIEQAKRMASSVIMGTPSTELALADQI 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
            +               + KPL    L  SL        +        P  +     L  
Sbjct: 622 MTEHQ---------IQCLTKPLSRRKLLQSLINEHVEAPQA----ITAPVETEESERLPL 668

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            +L VDDN  NLK+ +A LK     V     G++A   L    ++D  FMDIQMP MDG 
Sbjct: 669 TVLAVDDNPANLKLISALLKERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGV 727

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A + I+E+E N +                     P++A+TA  +    +  L +GMD Y
Sbjct: 728 TACQNIKELELNKD--------------------TPVIAVTAHAMAGERDRLLAAGMDDY 767

Query: 831 VSKPFEAEQLYREVSRFFP 849
           ++KP E   L + +  + P
Sbjct: 768 LTKPIEEHVLQQVLVHWNP 786


>gi|424039479|ref|ZP_17777845.1| signal transduction histidine-protein kinase BarA, partial [Vibrio
           cholerae HENC-02]
 gi|408892939|gb|EKM30284.1| signal transduction histidine-protein kinase BarA, partial [Vibrio
           cholerae HENC-02]
          Length = 931

 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 200/679 (29%), Positives = 321/679 (47%), Gaps = 117/679 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 208 NVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 267

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 268 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDY 327

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  R  L++V++L +  + +KG+E+
Sbjct: 328 LQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEI 387

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + +  ++P+ L+GDP R +QI+TNL+GNSIKFTE+G+I ++V +  +  DS+E++    
Sbjct: 388 TLKVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQ---- 443

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                                         V DTG GI    Q+
Sbjct: 444 --------------------------------------------FMVRDTGIGISERQQA 459

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT       
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTVRL---- 515

Query: 538 STSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 594
                 +S +M   P S   E +   G + L+V+P    A V++  + + GI V   S  
Sbjct: 516 ------HSTEM---PMSDLIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRS-- 564

Query: 595 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG----CGFQSKLFLLANSI 650
              L +       + + L   + ++ D SV+  ++   +++      G  S    LA+ +
Sbjct: 565 --SLPENDENYDYVLLNLAANQTYD-DQSVAA-WIEQAKRMAPSVIMGTPSTELALADQV 620

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
            +               + KPL    L  SL        +  I   E P ++ R   L  
Sbjct: 621 MNDHQ---------IQCLTKPLSRRKLLQSLITDHVETPQAVIAPIE-PVVNER---LPL 667

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            +L VDDN  NLK+ +A LK     V     G++A   L    ++D  FMDIQMP MDG 
Sbjct: 668 TVLAVDDNPANLKLISALLKERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGV 726

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A + I+E+E N +                     P++A+TA  +    +  L +GMD Y
Sbjct: 727 TACQHIKELELNKDT--------------------PVIAVTAHAMAGERDRLLAAGMDDY 766

Query: 831 VSKPFEAEQLYREVSRFFP 849
           ++KP E   L + +  + P
Sbjct: 767 LTKPIEEHVLQQVLVHWNP 785


>gi|378581123|ref|ZP_09829773.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Pantoea stewartii subsp. stewartii DC283]
 gi|377816202|gb|EHT99307.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Pantoea stewartii subsp. stewartii DC283]
          Length = 909

 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 192/615 (31%), Positives = 290/615 (47%), Gaps = 129/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGVLG    ++ T L  TQ+DY+ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTPLRTTQRDYMLTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LE++ F LRA LD+ L L +  + +K +EL V   + VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLMLESIPFPLRATLDETLVLLAPSAHEKKLELTVVCDNNVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGD  R +QI+ NLMGN+IKFTEKG I            ++ VE                
Sbjct: 403 IGDALRLQQILINLMGNAIKFTEKGTI------------NLRVEQH-------------- 436

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                     TF            +A  + L + V DTG GI  E Q+++F  F Q   S
Sbjct: 437 ----------TF------------TATQVELEIQVRDTGIGISEEQQAQLFQAFRQADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGG+G+GL I++ LV  M GEI FVS  N GSTF                   +++
Sbjct: 475 ISRRHGGSGLGLVITQKLVREMNGEITFVSRQNHGSTFWVRV---------------KLD 519

Query: 550 NQPNS-----VSSEFQGMKALVVDPRPIRAKVSRYHIQRLG---IQVEVVSDQLQCLSQI 601
             PN+     V       +   V+  P    V+   ++ LG   +QVE  S  L+ LSQ 
Sbjct: 520 LNPNAPSMPRVLDALSNTRMAYVEANP---DVASAVVEILGATPLQVE-HSLTLEGLSQP 575

Query: 602 ASGSKIINMILVEQEV-WEKDTSVSTLFVNNL----RKLGCGFQSKLFLLANSISSSRAN 656
                   ++L+   V   K   + + F+N+L     ++     S + LLA+ +      
Sbjct: 576 RYP-----LLLMAMPVDASKSQVLESRFINSLLERADQVIMALPSPMMLLADELKVR--- 627

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
                  I   I KP+  + L   L       +     +  LP            ++ VD
Sbjct: 628 ------GIDGCIAKPVSQTRLLPMLLELHARHSNDTSSSPRLP----------LTVMAVD 671

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ--FDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+      +     ++A  +    H+   D   MDIQMP++DG  A++
Sbjct: 672 DNPANLKLIGALLEEQVEHSILCNNAEQAIHV---AHRQALDVILMDIQMPDIDGIRASE 728

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           IIR + ++ N                     PI+A+TA  I    E  +R+GM+ Y++KP
Sbjct: 729 IIRTLPNHANT--------------------PIVAVTAHAIDGEREHLIRAGMNDYLAKP 768

Query: 835 FEAEQLYREVSRFFP 849
            +  +L + ++R+ P
Sbjct: 769 IDENKLSQVLTRYMP 783


>gi|91212153|ref|YP_542139.1| hybrid sensory histidine kinase BarA [Escherichia coli UTI89]
 gi|117625014|ref|YP_854002.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O1]
 gi|218559774|ref|YP_002392687.1| hybrid sensory histidine kinase BarA [Escherichia coli S88]
 gi|218690909|ref|YP_002399121.1| hybrid sensory histidine kinase BarA [Escherichia coli ED1a]
 gi|222157472|ref|YP_002557611.1| Signal transduction histidine-protein kinase barA [Escherichia coli
           LF82]
 gi|237706586|ref|ZP_04537067.1| sensor-regulator [Escherichia sp. 3_2_53FAA]
 gi|331658897|ref|ZP_08359839.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA206]
 gi|386600777|ref|YP_006102283.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           IHE3034]
 gi|386603161|ref|YP_006109461.1| hybrid sensory histidine kinase BarA [Escherichia coli UM146]
 gi|387618052|ref|YP_006121074.1| hybrid sensory histidine kinase BarA [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|416336791|ref|ZP_11673261.1| hybrid sensory histidine kinase BarA [Escherichia coli WV_060327]
 gi|417285892|ref|ZP_12073183.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW07793]
 gi|419915998|ref|ZP_14434329.1| hybrid sensory histidine kinase BarA [Escherichia coli KD1]
 gi|419944637|ref|ZP_14461112.1| hybrid sensory histidine kinase BarA [Escherichia coli HM605]
 gi|422356880|ref|ZP_16437553.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|422369450|ref|ZP_16449850.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|422750197|ref|ZP_16804108.1| hsp90-like protein [Escherichia coli H252]
 gi|422754447|ref|ZP_16808273.1| hsp90-like protein [Escherichia coli H263]
 gi|422840772|ref|ZP_16888742.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H397]
 gi|432359100|ref|ZP_19602318.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE4]
 gi|432363949|ref|ZP_19607107.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE5]
 gi|432442206|ref|ZP_19684544.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE189]
 gi|432447321|ref|ZP_19689619.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE191]
 gi|432554824|ref|ZP_19791543.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE47]
 gi|432574958|ref|ZP_19811433.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE55]
 gi|432589087|ref|ZP_19825441.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE58]
 gi|432598932|ref|ZP_19835203.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE62]
 gi|432617948|ref|ZP_19854058.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE75]
 gi|432755637|ref|ZP_19990183.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE22]
 gi|432779717|ref|ZP_20013939.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE59]
 gi|432788709|ref|ZP_20022837.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE65]
 gi|432822145|ref|ZP_20055835.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE118]
 gi|432823655|ref|ZP_20057325.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE123]
 gi|432899892|ref|ZP_20110402.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE192]
 gi|433006236|ref|ZP_20194662.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE227]
 gi|433008904|ref|ZP_20197318.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE229]
 gi|433015021|ref|ZP_20203360.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE104]
 gi|433024604|ref|ZP_20212583.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE106]
 gi|433029675|ref|ZP_20217529.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE109]
 gi|433154854|ref|ZP_20339790.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE176]
 gi|433164739|ref|ZP_20349472.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE179]
 gi|433169726|ref|ZP_20354349.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE180]
 gi|433325456|ref|ZP_20402550.1| hybrid sensory histidine kinase BarA [Escherichia coli J96]
 gi|91073727|gb|ABE08608.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
           coli UTI89]
 gi|115514138|gb|ABJ02213.1| BarA, sensory histidine kinase; two-component regulator with UvrY
           [Escherichia coli APEC O1]
 gi|218366543|emb|CAR04296.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli S88]
 gi|218428473|emb|CAR09399.2| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli ED1a]
 gi|222034477|emb|CAP77219.1| Signal transduction histidine-protein kinase barA [Escherichia coli
           LF82]
 gi|226899626|gb|EEH85885.1| sensor-regulator [Escherichia sp. 3_2_53FAA]
 gi|294490869|gb|ADE89625.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           IHE3034]
 gi|307625645|gb|ADN69949.1| hybrid sensory histidine kinase BarA [Escherichia coli UM146]
 gi|312947313|gb|ADR28140.1| hybrid sensory histidine kinase BarA [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315289301|gb|EFU48696.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315298721|gb|EFU57975.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320194925|gb|EFW69554.1| hybrid sensory histidine kinase BarA [Escherichia coli WV_060327]
 gi|323950997|gb|EGB46873.1| hsp90-like protein [Escherichia coli H252]
 gi|323957202|gb|EGB52926.1| hsp90-like protein [Escherichia coli H263]
 gi|331053479|gb|EGI25508.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA206]
 gi|371605783|gb|EHN94391.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H397]
 gi|386251133|gb|EII97300.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW07793]
 gi|388382398|gb|EIL44253.1| hybrid sensory histidine kinase BarA [Escherichia coli KD1]
 gi|388418028|gb|EIL77850.1| hybrid sensory histidine kinase BarA [Escherichia coli HM605]
 gi|430875621|gb|ELB99156.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE4]
 gi|430884405|gb|ELC07345.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE5]
 gi|430965454|gb|ELC82875.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE189]
 gi|430972167|gb|ELC89165.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE191]
 gi|431082175|gb|ELD88489.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE47]
 gi|431106488|gb|ELE10696.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE55]
 gi|431119110|gb|ELE22125.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE58]
 gi|431128802|gb|ELE30978.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE62]
 gi|431152840|gb|ELE53766.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE75]
 gi|431300941|gb|ELF90488.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE22]
 gi|431325632|gb|ELG13015.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE59]
 gi|431335709|gb|ELG22838.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE65]
 gi|431367214|gb|ELG53700.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE118]
 gi|431378180|gb|ELG63171.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE123]
 gi|431425032|gb|ELH07107.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE192]
 gi|431512604|gb|ELH90695.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE227]
 gi|431522643|gb|ELH99875.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE229]
 gi|431529338|gb|ELI06040.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE104]
 gi|431533828|gb|ELI10321.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE106]
 gi|431542224|gb|ELI17463.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE109]
 gi|431672880|gb|ELJ39114.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE176]
 gi|431685570|gb|ELJ51140.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE179]
 gi|431686002|gb|ELJ51568.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE180]
 gi|432346273|gb|ELL40759.1| hybrid sensory histidine kinase BarA [Escherichia coli J96]
          Length = 918

 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 286/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S+PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|375266660|ref|YP_005024103.1| hybrid sensory histidine kinase BarA [Vibrio sp. EJY3]
 gi|369841980|gb|AEX23124.1| hybrid sensory histidine kinase BarA [Vibrio sp. EJY3]
          Length = 932

 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 181/607 (29%), Positives = 293/607 (48%), Gaps = 108/607 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY++T + S   L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDYLQTIEKSANNLL 340

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+E+GKL LE + F+ R  L++V++L +  + +KG+E+ + +  ++P  L
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVVNLQATSAHEKGLEITLKVDPKIPPGL 400

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +QI+TNL+GNSIKFTE+G+I ++V +  +  DS+E++                
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQ---------------- 444

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                             V DTG GI    Q+++F  F Q   S
Sbjct: 445 --------------------------------FMVRDTGIGISERQQAQLFQAFSQADAS 472

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT             NS +M 
Sbjct: 473 ISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRL----------NSTEM- 521

Query: 550 NQPNSVSSEFQ---GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
             P S   E +   G + L+V+P    A V++  + + GI V   S     L +      
Sbjct: 522 --PMSDLIEIELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRS----SLPEANDHYD 575

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLG----CGFQSKLFLLANSISSSRANTSTDGV 662
            + + L   + +++ +  +  ++   +++      G  S    LA+ I            
Sbjct: 576 YVLLNLAANQTYDEQSVEA--WIEQAKQMAPSVIMGTPSTELALADQIMKEHQ------- 626

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
                + KPL    L  SL       +  + +  + P  ++    L   +L VDDN  NL
Sbjct: 627 --IQCLTKPLSRRRLLQSLISE----HVESPQPLKAPIKTVEEERLPLHVLAVDDNPANL 680

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
           K+ +A LK     V     G++A   L    ++D  FMDIQMP MDG  A K I+++E N
Sbjct: 681 KLISALLKERVETVTACSNGQQAVN-LATEKKYDMIFMDIQMPHMDGVTACKHIKQIELN 739

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
            +                     P++A+TA  +    +  L +GMD Y++KP E   L +
Sbjct: 740 KDT--------------------PVIAVTAHAMAGERDRLLAAGMDDYLTKPIEEHVLQQ 779

Query: 843 EVSRFFP 849
            +  + P
Sbjct: 780 VLVHWNP 786


>gi|331648511|ref|ZP_08349599.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M605]
 gi|386620350|ref|YP_006139930.1| BarA sensory histidine kinase [Escherichia coli NA114]
 gi|387830630|ref|YP_003350567.1| two-component sensor kinase [Escherichia coli SE15]
 gi|417663339|ref|ZP_12312919.1| BarA sensory histidine kinase ( VarS GacS) [Escherichia coli AA86]
 gi|432398701|ref|ZP_19641479.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE25]
 gi|432407829|ref|ZP_19650535.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE28]
 gi|432423087|ref|ZP_19665629.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE178]
 gi|432501226|ref|ZP_19742981.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE216]
 gi|432559949|ref|ZP_19796616.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE49]
 gi|432695553|ref|ZP_19930749.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE162]
 gi|432707017|ref|ZP_19942097.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE6]
 gi|432724221|ref|ZP_19959137.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE17]
 gi|432728803|ref|ZP_19963679.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE18]
 gi|432742493|ref|ZP_19977210.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE23]
 gi|432920781|ref|ZP_20124370.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE173]
 gi|432928465|ref|ZP_20129585.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE175]
 gi|432982113|ref|ZP_20170886.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE211]
 gi|432991852|ref|ZP_20180515.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE217]
 gi|433097555|ref|ZP_20283736.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE139]
 gi|433106999|ref|ZP_20292969.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE148]
 gi|433111988|ref|ZP_20297847.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE150]
 gi|281179787|dbj|BAI56117.1| two-component sensor kinase [Escherichia coli SE15]
 gi|330908812|gb|EGH37326.1| BarA sensory histidine kinase ( VarS GacS) [Escherichia coli AA86]
 gi|331042258|gb|EGI14400.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M605]
 gi|333970851|gb|AEG37656.1| BarA sensory histidine kinase [Escherichia coli NA114]
 gi|430914279|gb|ELC35382.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE25]
 gi|430928760|gb|ELC49306.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE28]
 gi|430943360|gb|ELC63478.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE178]
 gi|431027611|gb|ELD40673.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE216]
 gi|431090150|gb|ELD95923.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE49]
 gi|431232982|gb|ELF28584.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE162]
 gi|431256962|gb|ELF49896.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE6]
 gi|431264475|gb|ELF56189.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE17]
 gi|431272368|gb|ELF63475.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE18]
 gi|431282726|gb|ELF73605.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE23]
 gi|431440069|gb|ELH21399.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE173]
 gi|431442452|gb|ELH23541.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE175]
 gi|431490237|gb|ELH69854.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE211]
 gi|431493994|gb|ELH73585.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE217]
 gi|431614532|gb|ELI83685.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE139]
 gi|431625912|gb|ELI94469.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE148]
 gi|431627024|gb|ELI95436.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE150]
          Length = 918

 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 286/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S+PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFY-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|427711336|ref|YP_007059960.1| PAS domain-containing protein [Synechococcus sp. PCC 6312]
 gi|427375465|gb|AFY59417.1| PAS domain S-box [Synechococcus sp. PCC 6312]
          Length = 1054

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 189/628 (30%), Positives = 286/628 (45%), Gaps = 97/628 (15%)

Query: 259  AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 318
            AKS FLAT+SHEIRTPMN ++G+  +L+D EL   Q +++ T +ASG AL+SLIN++LD 
Sbjct: 487  AKSDFLATMSHEIRTPMNAIIGLTGLLLDMELTEQQHEFLNTIRASGDALLSLINDILDF 546

Query: 319  AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 378
            +K+ESG+LE+EA  F+LRA  ++ L L +G++ ++G+ELA ++    P  + GD GR RQ
Sbjct: 547  SKIESGRLEIEAYPFDLRACAEEALDLLAGRANEQGLELAYHMEPNTPVAVTGDMGRLRQ 606

Query: 379  IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 438
            I+ NL+GN++KFT  G   V +Y+    +  +  +    ++++T   YP+    H    F
Sbjct: 607  ILVNLIGNALKFTAAGE--VVLYIQAHPLTPVNPDPTPEATEDT--HYPI----HQPYVF 658

Query: 439  KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 498
            +                       ++ DTG GI  +  +R+F PF QV  S +R  GGTG
Sbjct: 659  Q----------------------FAIRDTGIGISPQGVTRLFQPFSQVDASTTRYFGGTG 696

Query: 499  IGLSISKYLVGRMKGEI-------------------GFVSIP-----NIGSTFTFTAVFG 534
            +GL+I K L   M G I                   GF   P     N GSTF FT    
Sbjct: 697  LGLAICKRLAEAMGGTIWLESCDGSGKLAKAGQPHSGFTPSPSSQLTNRGSTFYFTVTM- 755

Query: 535  NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 594
                     N Q    +     +  QG K L+VD      ++         ++ +   D 
Sbjct: 756  -------PVNLQAEEQKSAHTIASLQGRKVLIVDDNATNRQILELQTTSWHMEPQAYPDA 808

Query: 595  LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS-S 653
               L+ + +G+     IL        D  +  +    L +   G ++   L    +SS  
Sbjct: 809  KSALTALKAGANFDLAIL--------DLHMPHMNGLELGQAIHGLEAHKHLPLIMLSSVG 860

Query: 654  RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL---PSMSLRHL---L 707
            + N         + I KP++ S L   L R +            +   P  S+  L   L
Sbjct: 861  QGNALIASQHFAAAIAKPIKQSALFNVLLRILNEFQASQTVQKPVTLSPETSMADLAKHL 920

Query: 708  LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
               KIL+ +DN VN  VA   L+R G     V  G +    L     +D   MD+QMPEM
Sbjct: 921  PPLKILLAEDNKVNQMVALRILERLGYRADVVANGLEVLAALQ-RQPYDVVLMDMQMPEM 979

Query: 768  DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
            DG  AT+ I     + N                      I+AMTA+ ++   + CL +GM
Sbjct: 980  DGVTATQEIIRARPSQNRPF-------------------IIAMTANAMEGDRDICLDAGM 1020

Query: 828  DGYVSKPFEAEQLYREVSRFFPPIPDRS 855
            D Y+SKP +  +L R + +  P    R+
Sbjct: 1021 DDYLSKPIKIPELVRALGQCQPITATRA 1048


>gi|432890023|ref|ZP_20103069.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE165]
 gi|431432897|gb|ELH14573.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE165]
          Length = 918

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 286/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S+PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFY-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|28898529|ref|NP_798134.1| histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879574|ref|ZP_05891929.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           AN-5034]
 gi|260894951|ref|ZP_05903447.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           Peru-466]
 gi|260901039|ref|ZP_05909434.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|28806747|dbj|BAC60018.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086084|gb|EFO35779.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           Peru-466]
 gi|308093366|gb|EFO43061.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           AN-5034]
 gi|308110723|gb|EFO48263.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 1051

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 195/623 (31%), Positives = 289/623 (46%), Gaps = 99/623 (15%)

Query: 225 VGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDM 284
           + H  +    ++ K +ED       K  A  A  AKS FLA +SHEIRTP+NGV+G+ ++
Sbjct: 363 LSHEREQAKQKLTKAKEDAE---RAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEV 419

Query: 285 LMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLS 344
           L DT L  TQ+DYV T + S + L+SLIN+VLD +K+ESG L +   S  +R  + D+ S
Sbjct: 420 LADTPLTATQRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIAS 479

Query: 345 LFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 404
           + S K+++KG+EL V IS   P  ++ D  R RQ+I N M N++KFTE+G + +++  +E
Sbjct: 480 IVSPKAKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLE 539

Query: 405 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSV 464
                                                N+  +   F            SV
Sbjct: 540 S------------------------------------NESEAIIEF------------SV 551

Query: 465 EDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 524
           +D+G GI  + Q RIF PF Q   S +R  GGTG+GL+IS  LV  M G I   S    G
Sbjct: 552 QDSGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLESEKGRG 611

Query: 525 STFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL 584
           S F F        S ++      +NNQ             LV D   +  K+ R  +   
Sbjct: 612 SRFYFQ--LTAPISQAHFRARHTVNNQI-----------WLVCDDSDLETKL-RNELSFY 657

Query: 585 GIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSV-STLFVNNLRKLGCGFQSKL 643
            IQV      L  L    +  + I ++ VE      D +V +T  + NL       Q   
Sbjct: 658 QIQVHQSVHDLSALPTWINDKERIIILYVET---TPDAAVKNTDLMRNLEH-----QHVQ 709

Query: 644 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL 703
             L   + S + +    G  + ++I +PL    L  +L+   G   +    +   P+  L
Sbjct: 710 VCLIKHLHSQQLDF---GHRVAAIITQPLLGQRLLKALESCAGRFTQS--ISVVQPATRL 764

Query: 704 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 763
             L    K+L+VDDN VN K+A   + + G +      G++A +L     Q+    MD  
Sbjct: 765 ETL---PKVLVVDDNTVNQKIAGLHVTKAGFSFDVAANGEEAVDLFRTS-QYCLILMDCM 820

Query: 764 MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 823
           MP MDGFEATK IR++E   N                  F +PI+A+TA V+    ++C 
Sbjct: 821 MPVMDGFEATKQIRQIEQKENR----------------TFRIPIIALTASVVDDDIQKCF 864

Query: 824 RSGMDGYVSKPFEAEQLYREVSR 846
             GMD YV KPF+A+ L  ++ +
Sbjct: 865 DVGMDDYVPKPFKADLLKEKLDK 887



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 131/299 (43%), Gaps = 37/299 (12%)

Query: 563  KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDT 622
            K LVVD   +  K++  H+ + G   +V ++  + +    +      +IL++  +   D 
Sbjct: 769  KVLVVDDNTVNQKIAGLHVTKAGFSFDVAANGEEAVDLFRTSQYC--LILMDCMMPVMDG 826

Query: 623  SVSTLFVNNL-RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 681
              +T  +  + +K    F+  +  L  S+         D V +   + KP ++ +L   L
Sbjct: 827  FEATKQIRQIEQKENRTFRIPIIALTASVVDDDIQKCFD-VGMDDYVPKPFKADLLKEKL 885

Query: 682  QRAMGVG---------NKGNIRNWELPSMSLR-------HLLLGRKILIVDDNNVNLKVA 725
             +A+G+          N+ ++  +E P    R         +   +IL+V+DN VN KVA
Sbjct: 886  DKAVGLRLPVTASTKLNQSSLTAFEEPEFKQRVGETLSAAPMRRERILLVEDNRVNQKVA 945

Query: 726  AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785
            +  L + G      E G+ A E+      FD   MD  MP MDGFEATK IR  E     
Sbjct: 946  SLLLSKAGYQFEVAENGQIAVEMFQRDGGFDIILMDCMMPVMDGFEATKQIRAYE----- 1000

Query: 786  RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                  + +E          PI+A+TA V+    + C  SGMD YV KP   E+L  ++
Sbjct: 1001 ----ASLGLEK--------TPIIALTASVVDDDIQRCFDSGMDAYVPKPVRKEKLLHQI 1047


>gi|386817642|ref|ZP_10104860.1| histidine kinase [Thiothrix nivea DSM 5205]
 gi|386422218|gb|EIJ36053.1| histidine kinase [Thiothrix nivea DSM 5205]
          Length = 602

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 195/652 (29%), Positives = 300/652 (46%), Gaps = 109/652 (16%)

Query: 206 PWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKA----EAADVAKS 261
           PW +L  + S+ I             T  R A+  +   G++   K A    E A   K+
Sbjct: 47  PWGILGANISLTI-------------TRYRFARQLQTMGGIINKAKTAQHVAEEAVKTKA 93

Query: 262 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKV 321
           +FLAT+SHEIRTPMNGV+GM  +LM+T +   Q ++V +   SG+ L+++IN+VLD +K+
Sbjct: 94  RFLATMSHEIRTPMNGVIGMTRLLMNTPMSKKQSEFVESIHLSGEHLLTVINDVLDFSKI 153

Query: 322 ESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIIT 381
           E+GKL+L+  +F+LRA ++D+L+L   K+ +K +ELA  +   +P+ + GD  R RQI+T
Sbjct: 154 EAGKLDLKREAFDLRAAIEDILNLLHAKALEKNLELAFAVGSSIPDFIEGDMVRLRQILT 213

Query: 382 NLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTF 441
           NL+GN+IKFT+ G   VT++++                                      
Sbjct: 214 NLIGNAIKFTDSGE--VTIFVIS------------------------------------- 234

Query: 442 NQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGL 501
                    +S   D   L   + DTG GIP      IF  F +V     + H GTG+GL
Sbjct: 235 ---------RSHHGDEYELEFQINDTGPGIPPNRLDSIFEQFSRVDEKQVQRHEGTGLGL 285

Query: 502 SISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQG 561
           +IS++L+  M G I   S   IGS F FT      + T   +    + N P         
Sbjct: 286 AISRHLIDMMDGRIWVESTLGIGSRFHFTIKTRKANGTLKPY---LLKNIPGIADK---- 338

Query: 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKD 621
            + L+V+  P   +  R   +  G   + V      +S+IA G    ++ L+E  +   D
Sbjct: 339 -RILIVENNPASCQALRDFCRGWGASTDAVHTSADAISRIAVGQP-YDLALIESNL-PGD 395

Query: 622 TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 681
             +       +RK     +  + L+A         +  +  ++   + KP+  S L  SL
Sbjct: 396 APLE--LGKYIRKRFSKQELPMILIAPPNDRHPKESVRELYNL--YLTKPITRSRLFDSL 451

Query: 682 QRAMGVGNKGNIRNWELPSMSLRHLLLGRK----ILIVDDNNVNLKVAAAGLKRYGAAVV 737
             A+G  +    R    P  S   +  G +    IL+ +DN +N  VA A L+       
Sbjct: 452 MTALGEASLAATR----PECS--RIKPGERLPLAILLAEDNPINQVVATAILEELAYTAD 505

Query: 738 CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAY 797
            VE G  A   L   H +D  FMD+QMPE+DG EAT+ IR    NF              
Sbjct: 506 VVENGLLALRALQQRH-YDVIFMDMQMPELDGLEATRRIRA---NF-------------- 547

Query: 798 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
             +      I+AMTA+ +    +ECL +GM+ Y+SKP   E +   + R FP
Sbjct: 548 --LPERQPVIIAMTANAMAGDRQECLNAGMNDYISKPILPETVAAALQRCFP 597


>gi|392980458|ref|YP_006479046.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
           dissolvens SDM]
 gi|392326391|gb|AFM61344.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
           dissolvens SDM]
          Length = 919

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 187/620 (30%), Positives = 290/620 (46%), Gaps = 136/620 (21%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + +EL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRSISNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGG G+GL I++ LV  M G+I F S PN GSTF F         V  +G  T   
Sbjct: 475 ISRRHGGRGLGLVITQKLVKEMGGDISFHSQPNRGSTFWFHINLDLNPNVLTDGPVTDCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PN+ +++            +V  P      V  Y I  +GI V    +   
Sbjct: 535 KGKRLAYVEPNAAAAQCTLDILSSTPLEVVYSPTFSALTVEHYDILLMGIPVTFTGE--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++QE   K  S++      L  L C  Q     L N        
Sbjct: 592 --------------LTMQQERLAKAASMTDYL---LLALPCHAQINAEELKN-------- 626

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASL-------QRAMGVGNKGNIRNWELPSMSLRHLLLG 709
              DG +  + ++KPL ++ L  +L       Q A+ + N        LP MS       
Sbjct: 627 ---DGAA--ACLLKPLTATRLLPALTAYCRLNQHAVALEND----EQRLP-MS------- 669

Query: 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
             ++ VDDN  NLK+    L+     V     G +A E      QFD   MDIQMP MDG
Sbjct: 670 --VMAVDDNPANLKLIGVLLEDQVQHVELCTNGAEAVE-QAKQMQFDLILMDIQMPGMDG 726

Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
             A ++IR++ H                        P++A+TA  +    E+ L +GM+ 
Sbjct: 727 IRACELIRQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLSAGMND 766

Query: 830 YVSKPFEAEQLYREVSRFFP 849
           Y++KP + E+L+  + R+ P
Sbjct: 767 YLAKPIDEEKLHNLLLRYKP 786


>gi|424034026|ref|ZP_17773436.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HENC-01]
 gi|408873770|gb|EKM12959.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HENC-01]
          Length = 932

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 199/679 (29%), Positives = 321/679 (47%), Gaps = 117/679 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  R  L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + +  ++P+ L+GDP R +QI+TNL+GNSIKFTE+G+I ++V +  +  DS+E++    
Sbjct: 389 TLKVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQ---- 444

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                                         V DTG GI    Q+
Sbjct: 445 --------------------------------------------FMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTVRL---- 516

Query: 538 STSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 594
                H+++     P S   E +   G + L+V+P    A V++  + + GI V   S  
Sbjct: 517 -----HSTE----MPMSDLIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRS-- 565

Query: 595 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG----CGFQSKLFLLANSI 650
              L +       + + L   + ++ D SV+  ++   +++      G  S    LA+ +
Sbjct: 566 --SLPENDENYDYVLLNLAANQTYD-DQSVAA-WIEQAKRMAPSVIMGTPSTELALADQV 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
            +               + KPL    L  SL        +  I   E P ++ R   L  
Sbjct: 622 MNDHQ---------IQCLTKPLSRRKLLQSLITDHVETPQAVIAPIE-PVVNER---LPL 668

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            +L VDDN  NLK+ +A LK     V     G++A   L    ++D  FMDIQMP MDG 
Sbjct: 669 TVLAVDDNPANLKLISALLKERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGV 727

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A + I+E+E N +                     P++A+TA  +    +  L +GMD Y
Sbjct: 728 TACQHIKELELNKDT--------------------PVIAVTAHAMAGERDRLLAAGMDDY 767

Query: 831 VSKPFEAEQLYREVSRFFP 849
           ++KP E   L + +  + P
Sbjct: 768 LTKPIEEHVLQQVLVHWNP 786


>gi|153803093|ref|ZP_01957679.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
 gi|229521281|ref|ZP_04410701.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80]
 gi|124121375|gb|EAY40118.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
 gi|229341813|gb|EEO06815.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80]
          Length = 927

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 196/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     V +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAVPE 569

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLTNTSLPKPQADKLPLC- 666

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 725 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 764

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 765 LTKPIE-EHILQQVLVHWSP 783


>gi|229527059|ref|ZP_04416454.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)]
 gi|229335456|gb|EEO00938.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)]
          Length = 927

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 196/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 666

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      PI+A+TA  +    +  L++GMD Y
Sbjct: 725 TACKAIKQL---------------KGYRD-----TPIIAVTAHAMAGERDRLLKAGMDDY 764

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 765 LTKPIE-EHILQQVLVHWSP 783


>gi|255746876|ref|ZP_05420821.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101]
 gi|262162041|ref|ZP_06031057.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|379742241|ref|YP_005334210.1| hybrid sensory histidine kinase BarA [Vibrio cholerae IEC224]
 gi|417814468|ref|ZP_12461121.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-49A2]
 gi|417818208|ref|ZP_12464836.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HCUF01]
 gi|418339416|ref|ZP_12948306.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-23A1]
 gi|418346987|ref|ZP_12951740.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-28A1]
 gi|418355750|ref|ZP_12958469.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-61A1]
 gi|419827397|ref|ZP_14350896.1| his Kinase A domain protein [Vibrio cholerae CP1033(6)]
 gi|421318500|ref|ZP_15769068.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1032(5)]
 gi|421322202|ref|ZP_15772754.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1038(11)]
 gi|421325999|ref|ZP_15776523.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1041(14)]
 gi|421333613|ref|ZP_15784090.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1046(19)]
 gi|421340583|ref|ZP_15791015.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-20A2]
 gi|421348407|ref|ZP_15798784.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-46A1]
 gi|422897543|ref|ZP_16934982.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-40A1]
 gi|422903742|ref|ZP_16938706.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-48A1]
 gi|422907626|ref|ZP_16942419.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-70A1]
 gi|422914466|ref|ZP_16948970.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HFU-02]
 gi|422926670|ref|ZP_16959682.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-38A1]
 gi|423145993|ref|ZP_17133586.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-19A1]
 gi|423150669|ref|ZP_17137982.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-21A1]
 gi|423154503|ref|ZP_17141667.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-22A1]
 gi|423157571|ref|ZP_17144663.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-32A1]
 gi|423161144|ref|ZP_17148082.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-33A2]
 gi|423165973|ref|ZP_17152692.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-48B2]
 gi|423732002|ref|ZP_17705303.1| his Kinase A domain protein [Vibrio cholerae HC-17A1]
 gi|423771404|ref|ZP_17713568.1| his Kinase A domain protein [Vibrio cholerae HC-50A2]
 gi|423896780|ref|ZP_17727612.1| his Kinase A domain protein [Vibrio cholerae HC-62A1]
 gi|423931983|ref|ZP_17732005.1| his Kinase A domain protein [Vibrio cholerae HC-77A1]
 gi|424003418|ref|ZP_17746492.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-17A2]
 gi|424007212|ref|ZP_17750181.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-37A1]
 gi|424025192|ref|ZP_17764841.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-62B1]
 gi|424028078|ref|ZP_17767679.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-69A1]
 gi|424587360|ref|ZP_18026938.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1030(3)]
 gi|424596014|ref|ZP_18035332.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1040(13)]
 gi|424602685|ref|ZP_18041824.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1047(20)]
 gi|424607619|ref|ZP_18046559.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1050(23)]
 gi|424611435|ref|ZP_18050273.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-39A1]
 gi|424614263|ref|ZP_18053047.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-41A1]
 gi|424618230|ref|ZP_18056900.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-42A1]
 gi|424623016|ref|ZP_18061519.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-47A1]
 gi|424645975|ref|ZP_18083709.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-56A2]
 gi|424653742|ref|ZP_18091121.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-57A2]
 gi|440710678|ref|ZP_20891326.1| BarA sensory histidine kinase [Vibrio cholerae 4260B]
 gi|443504792|ref|ZP_21071744.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-64A1]
 gi|443508698|ref|ZP_21075453.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-65A1]
 gi|443512536|ref|ZP_21079169.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-67A1]
 gi|443516095|ref|ZP_21082600.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-68A1]
 gi|443519886|ref|ZP_21086274.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-71A1]
 gi|443524781|ref|ZP_21090984.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-72A2]
 gi|443532365|ref|ZP_21098379.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-7A1]
 gi|443536179|ref|ZP_21102046.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-80A1]
 gi|443539707|ref|ZP_21105560.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-81A1]
 gi|255735278|gb|EET90678.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101]
 gi|262028290|gb|EEY46947.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|340035804|gb|EGQ96782.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HCUF01]
 gi|340036954|gb|EGQ97930.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-49A2]
 gi|341619799|gb|EGS45601.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-48A1]
 gi|341619916|gb|EGS45703.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-70A1]
 gi|341620721|gb|EGS46487.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-40A1]
 gi|341636278|gb|EGS60980.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HFU-02]
 gi|341645671|gb|EGS69800.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-38A1]
 gi|356417346|gb|EHH70964.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-21A1]
 gi|356422237|gb|EHH75720.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-19A1]
 gi|356427708|gb|EHH80949.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-22A1]
 gi|356428376|gb|EHH81603.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-23A1]
 gi|356429515|gb|EHH82731.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-28A1]
 gi|356439041|gb|EHH92041.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-32A1]
 gi|356443637|gb|EHH96456.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-33A2]
 gi|356449564|gb|EHI02310.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-48B2]
 gi|356452248|gb|EHI04927.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-61A1]
 gi|378795751|gb|AFC59222.1| hybrid sensory histidine kinase BarA [Vibrio cholerae IEC224]
 gi|395916758|gb|EJH27588.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1032(5)]
 gi|395917837|gb|EJH28665.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1041(14)]
 gi|395917942|gb|EJH28769.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1038(11)]
 gi|395929015|gb|EJH39768.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1046(19)]
 gi|395939866|gb|EJH50548.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-20A2]
 gi|395942986|gb|EJH53662.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-46A1]
 gi|395957731|gb|EJH68260.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-56A2]
 gi|395958234|gb|EJH68734.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-57A2]
 gi|395960865|gb|EJH71220.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-42A1]
 gi|395970118|gb|EJH79925.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-47A1]
 gi|395972029|gb|EJH81650.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1030(3)]
 gi|395974488|gb|EJH84014.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1047(20)]
 gi|408006175|gb|EKG44347.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-39A1]
 gi|408010757|gb|EKG48606.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-41A1]
 gi|408030564|gb|EKG67219.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1040(13)]
 gi|408041953|gb|EKG78036.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1050(23)]
 gi|408608187|gb|EKK81590.1| his Kinase A domain protein [Vibrio cholerae CP1033(6)]
 gi|408622447|gb|EKK95431.1| his Kinase A domain protein [Vibrio cholerae HC-17A1]
 gi|408632864|gb|EKL05292.1| his Kinase A domain protein [Vibrio cholerae HC-50A2]
 gi|408653575|gb|EKL24737.1| his Kinase A domain protein [Vibrio cholerae HC-77A1]
 gi|408654068|gb|EKL25211.1| his Kinase A domain protein [Vibrio cholerae HC-62A1]
 gi|408844311|gb|EKL84443.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-37A1]
 gi|408845067|gb|EKL85188.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-17A2]
 gi|408869590|gb|EKM08886.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-62B1]
 gi|408878354|gb|EKM17364.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-69A1]
 gi|439974007|gb|ELP50211.1| BarA sensory histidine kinase [Vibrio cholerae 4260B]
 gi|443430871|gb|ELS73429.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-64A1]
 gi|443434701|gb|ELS80853.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-65A1]
 gi|443438594|gb|ELS88314.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-67A1]
 gi|443442631|gb|ELS95939.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-68A1]
 gi|443446520|gb|ELT03184.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-71A1]
 gi|443449234|gb|ELT09535.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-72A2]
 gi|443457755|gb|ELT25152.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-7A1]
 gi|443460682|gb|ELT31766.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-80A1]
 gi|443464837|gb|ELT39498.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-81A1]
          Length = 916

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 317

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 318 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 509

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 510 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 558

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 559 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 610

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 611 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 655

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 656 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 713

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 714 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 753

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 754 LTKPIE-EHILQQVLVHWSP 772


>gi|401675106|ref|ZP_10807100.1| BarA Protein [Enterobacter sp. SST3]
 gi|400217563|gb|EJO48455.1| BarA Protein [Enterobacter sp. SST3]
          Length = 919

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 181/614 (29%), Positives = 288/614 (46%), Gaps = 124/614 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + +EL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRSISSNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         V  +G  T   
Sbjct: 475 ISRRHGGTGLGLVITQRLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVLTDGPVTDCL 534

Query: 543 HNSQQMNNQPNSVSSEFQGMKALVVDPRPI-------RAKVSRYHIQRLGIQVEVVSDQL 595
              +    +PN+ +++   +  L   P  +          V  Y I  +GI V    +  
Sbjct: 535 KGKRLAYVEPNAAAAQCT-LDILSTTPLEVVYSPTFSALAVEHYDILLMGIPVTFTGELT 593

Query: 596 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 655
               ++A  + + + +L+                     L C  Q     L N       
Sbjct: 594 MQQERLAKAALMTDYLLL--------------------ALPCHGQLNAEELKN------- 626

Query: 656 NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIV 715
               DG +  + ++KPL ++ L  +L     +          LP ++     L   ++ V
Sbjct: 627 ----DGAA--ACLLKPLTATRLLPALTEYCRLSQHA------LPLINDEQ-KLPMSVMAV 673

Query: 716 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI 775
           DDN  NLK+  A L+     V     G +A E      QFD   MDIQMP MDG  A ++
Sbjct: 674 DDNPANLKLIGALLEDQVQHVELCTSGAQAVE-QAKQMQFDLILMDIQMPGMDGIRACEL 732

Query: 776 IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
           I ++ H                        P++A+TA  +    E+ L +GM+ Y++KP 
Sbjct: 733 IHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPI 772

Query: 836 EAEQLYREVSRFFP 849
           + E+L+  + R+ P
Sbjct: 773 DEEKLHSLLLRYKP 786


>gi|384425392|ref|YP_005634750.1| BarA sensory histidine kinase [Vibrio cholerae LMA3984-4]
 gi|327484945|gb|AEA79352.1| BarA sensory histidine kinase [Vibrio cholerae LMA3984-4]
          Length = 916

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 196/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 317

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 318 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 509

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 510 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 558

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T  V        G  S    LA+ +
Sbjct: 559 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMTHHV------IVGVPSTELALADQL 610

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 611 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 655

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 656 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 713

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I++++                Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 714 TACKAIKQLKE---------------YRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 753

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 754 LTKPIE-EHILQQVLVHWSP 772


>gi|402573935|ref|YP_006623278.1| signal transduction histidine kinase [Desulfosporosinus meridiei DSM
            13257]
 gi|402255132|gb|AFQ45407.1| signal transduction histidine kinase [Desulfosporosinus meridiei DSM
            13257]
          Length = 1259

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 169/595 (28%), Positives = 301/595 (50%), Gaps = 92/595 (15%)

Query: 259  AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 318
            AKSQFLA +SHEIRTPMN ++G+  +L  ++L  TQ+ YV   + + KAL+ +IN++LD 
Sbjct: 540  AKSQFLANMSHEIRTPMNAIMGLTHLLRQSDLKDTQKSYVLKTEEASKALLRIINDILDF 599

Query: 319  AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 378
            +K+E+GKLE+E + FNL  +L+++ +L++  + +KG+++     + VP+ LIGDP R  Q
Sbjct: 600  SKIEAGKLEIEMIQFNLDKVLENISNLYTISATNKGIDINFDRGEAVPDELIGDPLRLEQ 659

Query: 379  IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 438
            I++NL+ N+IKFT++G + V+V + EE  D +++   ++      +G  + +  H  K F
Sbjct: 660  ILSNLITNAIKFTDQGEVNVSVRVFEETEDKVKLHFRVTD-----TGIGIKEE-HIGKLF 713

Query: 439  KTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 497
              F Q DGST                                           +R +GGT
Sbjct: 714  TAFTQADGST-------------------------------------------TRKYGGT 730

Query: 498  GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS- 556
            G+GL+ISK LV  MKG+I   S+   G++F     F   S+            +PN    
Sbjct: 731  GLGLTISKQLVELMKGDIWVESVYGEGTSFEVLLQFEKDSALI----------KPNFADY 780

Query: 557  SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQE 616
             + +G K LVVD       +    +    ++V  +++  + +  +    K  ++++++  
Sbjct: 781  PDLRGKKVLVVDHNKTSLVILERMLCSFSLEVTALNNPFEAIELMH--QKDFDLLVLDYN 838

Query: 617  VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 676
            +   D S   ++   +          +F+ A    S  A  +  G  I   ++KP+  S+
Sbjct: 839  L--PDLSGIEMYKRLVANTEITLPKTIFVSAAGRESYYAQANQLG--IKYFLVKPINQSL 894

Query: 677  LAASLQRAM---GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYG 733
            +  ++  A+          IRN E+  +  R  L G+++L+V+DN +N  VA   L++ G
Sbjct: 895  MFDAVMNALKGRAWSQANRIRNEEV-QLKHRQKLAGKRLLLVEDNEINQLVAKDILEQAG 953

Query: 734  AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVS 793
              V   + G++A + +   +++DA  MD+QMP MDG+ AT+I+R                
Sbjct: 954  IHVSIADNGQEAIKYV-HGNRYDALLMDVQMPIMDGYRATEILR---------------- 996

Query: 794  IEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
                E+ S+  +PI+AMTA+ ++   E+ + +GM+ Y+SKP +   L+  + ++ 
Sbjct: 997  ----ESYSSEELPIIAMTANALRGDREKSIEAGMNDYISKPIDPILLFETLEKWL 1047


>gi|421355136|ref|ZP_15805468.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HE-45]
 gi|395954261|gb|EJH64874.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HE-45]
          Length = 916

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 317

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 318 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 509

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 510 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 558

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 559 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 610

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 611 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLTNTSLPKPQADKLPLC- 655

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 656 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 713

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 714 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 753

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 754 LTKPIE-EHILQQVLVHWSP 772


>gi|168701075|ref|ZP_02733352.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 1034

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 175/608 (28%), Positives = 287/608 (47%), Gaps = 90/608 (14%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           ++  K+ AEAA+ AK +FLA VSHE+RTPMN +LGM +++++TEL   Q+  + T +++ 
Sbjct: 382 LLVAKEAAEAANRAKDEFLANVSHELRTPMNAILGMTELVLETELREDQRQCLATVKSAA 441

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
             L+ ++N++LD AK+E+GKLEL+   F+LRA++ D L   + ++   G+EL   +   V
Sbjct: 442 DNLLGILNDLLDFAKIEAGKLELDPTEFSLRAVVGDTLRALAARAHRAGLELVGDVHPAV 501

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
           P+ L+GDPGR RQ++ NL+GN+IKFT  G + V V    E  D  ++             
Sbjct: 502 PDALVGDPGRLRQVLFNLIGNAIKFTPAGEVVVGV----EPADPSDI------------- 544

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                              GS   F            +V DTG GI  E   RIF  F Q
Sbjct: 545 ------------------GGSAVRF------------TVRDTGIGIKPEKLDRIFHAFEQ 574

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
              S +R +GGTG+GL+IS  LV  M G IG  S P  GSTF FTA FG  +  S     
Sbjct: 575 EDTSTTRRYGGTGLGLTISGRLVALMGGAIGVESEPGRGSTFAFTARFGRCARPSG---- 630

Query: 546 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI---A 602
            ++   P +     +G++ LVVD      ++    ++   +  +   D     S +   A
Sbjct: 631 VELIPTPEA----LRGLRVLVVDDNATNRRILSATLRNWQMSPDTAGDAADATSALWHAA 686

Query: 603 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
              +   +++++  +   D          +R+      +++ LL +         S + +
Sbjct: 687 GQGQPYPLVVLDARMPGTD---GFSLAARIREAPALAATRIVLLTSGDRPDDPARSRE-L 742

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKG-NIRNWELPSMSLRHLLLGRKILIVDDNNVN 721
            I + ++KP+++ +L   ++R M    +    R  E P+   R L    ++L+ +DN  N
Sbjct: 743 RIDAHVLKPIQADLLLGVIRRVMRTSAETVPEREPEKPATGARAL----RVLVAEDNEFN 798

Query: 722 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
            ++    L R G  V  V  G++A       + FD   +D+ MPE++GFE  + +R    
Sbjct: 799 ARLVEELLVRRGHRVQVVADGRQALS-RAGTNDFDVLLLDVHMPELNGFEVVRALR---- 853

Query: 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
                              +   +P++ +TA       EECL +GMD +++KP     L 
Sbjct: 854 ------------------AAGSQLPVIGLTARSRPEDREECLAAGMDDFLTKPVRLPDLL 895

Query: 842 REVSRFFP 849
             + R  P
Sbjct: 896 AAMERLVP 903


>gi|170765863|ref|ZP_02900674.1| sensor histidine kinase/response regulator BarA [Escherichia
           albertii TW07627]
 gi|170125009|gb|EDS93940.1| sensor histidine kinase/response regulator BarA [Escherichia
           albertii TW07627]
          Length = 918

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 187/602 (31%), Positives = 284/602 (47%), Gaps = 100/602 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F        +   E  S Q  
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQC- 533

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
                      G +   V+P    A+ +      L I  E   + +   S  A   +  +
Sbjct: 534 ---------LAGKRLAYVEPNSAAAQCT------LDILSETPLEVIYSPSFSALPPEHYD 578

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
           M+L+   V    T    L + + R L     +   +LA    +           I + ++
Sbjct: 579 MMLLGIAV----TFREPLTMQHARLLKAVSMADYLMLALPCHAQVNAEKLKQDGIGACLL 634

Query: 670 KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 729
           KPL  + L  +L            +N  LP    R L +   ++ VDDN  NLK+  A L
Sbjct: 635 KPLTPTRLLPALTEFC-----HQKQNTLLPVNDERKLAM--TVMAVDDNPANLKLIGALL 687

Query: 730 KRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787
           +     V   + G +A E    MP   FD   MDIQMP+MDG  A ++I ++ H      
Sbjct: 688 EDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACELIHQLPH------ 738

Query: 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                             P++A+TA  +    E+ L +GM  Y++KP E E+L+  + R+
Sbjct: 739 --------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRY 784

Query: 848 FP 849
            P
Sbjct: 785 KP 786


>gi|262167284|ref|ZP_06034994.1| BarA sensory histidine kinase [Vibrio cholerae RC27]
 gi|419838143|ref|ZP_14361581.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-46B1]
 gi|421343854|ref|ZP_15794257.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-43B1]
 gi|423736105|ref|ZP_17709295.1| his Kinase A domain protein [Vibrio cholerae HC-41B1]
 gi|429886893|ref|ZP_19368431.1| BarA sensory histidine kinase (VarS, GacS) [Vibrio cholerae PS15]
 gi|262024259|gb|EEY42950.1| BarA sensory histidine kinase [Vibrio cholerae RC27]
 gi|395939934|gb|EJH50615.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-43B1]
 gi|408629077|gb|EKL01790.1| his Kinase A domain protein [Vibrio cholerae HC-41B1]
 gi|408856691|gb|EKL96386.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-46B1]
 gi|429226205|gb|EKY32345.1| BarA sensory histidine kinase (VarS, GacS) [Vibrio cholerae PS15]
          Length = 916

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 317

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 318 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 509

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 510 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 558

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 559 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 610

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 611 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 655

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 656 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 713

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 714 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 753

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 754 LTKPIE-EHILQQVLVHWSP 772


>gi|443311633|ref|ZP_21041259.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
 gi|442778362|gb|ELR88629.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
          Length = 1049

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 199/628 (31%), Positives = 296/628 (47%), Gaps = 107/628 (17%)

Query: 239 VEEDYHGMMEL----------KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT 288
           + E Y G + L          K  AE+A   KSQFLA +SHEIRTPMN ++G+ D+L+  
Sbjct: 381 ISEQYFGQLALIASTKALEKAKVAAESATRLKSQFLANMSHEIRTPMNAIVGLTDILLTM 440

Query: 289 ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 348
           +L   QQD+V T Q+S   L+ LIN++LD +K+ESGKLELE  SFNLR  +++ L L + 
Sbjct: 441 QLTPQQQDFVNTIQSSSDTLLMLINDILDLSKIESGKLELEQYSFNLRDFVEESLDLLAF 500

Query: 349 KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVY---LVEE 405
           K+ +K +ELA  I+  VP  L+ D  R RQI+ NL+ N++KFT  G + V V    L   
Sbjct: 501 KAAEKNIELAYLIAPEVPNLLVADVIRLRQILVNLLSNAVKFTSTGEVIVLVTARKLQTP 560

Query: 406 VVDSIEVETELS-SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSV 464
             ++I+   E   + K+T  G P+ +R H  + FK+F+                      
Sbjct: 561 KKNTIDTHYEFKFAVKDTGVGIPL-ERQH--RLFKSFS---------------------- 595

Query: 465 EDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 524
                               QV  S +R +GGTG+GL+I K L  +M G++   S  N G
Sbjct: 596 --------------------QVDSSTTRQYGGTGLGLAIGKQLSEKMGGQMWCESQANCG 635

Query: 525 STFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL 584
           STF FT +    +      NSQ +  Q      + QG K L+VD      ++     Q  
Sbjct: 636 STFYFTIIAPAAA------NSQILVEQDE---LQLQGKKVLIVDDNGTNRQILILQTQFW 686

Query: 585 GIQ---VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSV-STLFVNNLRKLGCGFQ 640
           G+    VE  ++ L+ L + +    I++M +   +       +   L   NL        
Sbjct: 687 GMMPQAVESGNEALKLLQKQSFDLAILDMQMPHMDGLTLAIKIHEYLPTKNL-------- 738

Query: 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-ELP 699
             L LL +         +    +  +VI KP++   L   L + +   NK  I     LP
Sbjct: 739 -PLVLLTSIDKGQIEKQARTNANFAAVISKPIKQIHLCNVLNQIL--NNKSVILTTPTLP 795

Query: 700 SMSLRHLL-LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
                 ++ L   IL+ +DN VN KVA   L++ G A    + G +    L   H +D  
Sbjct: 796 RQKTTPIVALPLSILLAEDNIVNQKVALHLLQQLGYAADVAKDGLEVLAALNHQH-YDVI 854

Query: 759 FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
            MD+QMP+MDG  AT+ I       ++R+R                  I+AMTA+ +Q  
Sbjct: 855 LMDVQMPKMDGLAATRQIIA-----SHRVRPR----------------IIAMTANAMQGD 893

Query: 819 YEECLRSGMDGYVSKPFEAEQLYREVSR 846
            EECL +GMD Y+SKP   +QL   +S+
Sbjct: 894 REECLNAGMDDYLSKPIRLDQLAAALSK 921


>gi|86358747|ref|YP_470639.1| two-component sensor histidine kinase/response regulator hybrid
            protein [Rhizobium etli CFN 42]
 gi|86282849|gb|ABC91912.1| probable two-component sensor histidine kinase/response regulator
            hybrid protein [Rhizobium etli CFN 42]
          Length = 1133

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 178/624 (28%), Positives = 290/624 (46%), Gaps = 104/624 (16%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + +L  +AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L  T LD  Q+ ++     SG
Sbjct: 581  LRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFIDIIVKSG 640

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
             AL+++IN++LD +K+++G+++L   +F+L   ++DV +L S  + +K +EL V  +  +
Sbjct: 641  NALLTIINDILDFSKIDAGQMKLRKAAFDLVEAVEDVATLLSSHAAEKNIELLVRAAPDL 700

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  +IGD GRFRQI+TNL+GN++KFTE+GH+FV V                         
Sbjct: 701  PAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDV------------------------- 735

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                    F++++   I   + +EDTG GIP E    +F  F Q
Sbjct: 736  -----------------------GFQAAAGGEIIASIRIEDTGIGIPREKLDSVFEKFSQ 772

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
            V  S +R H GTG+GL+I+  LV    G I   S    GS FT    F   ++       
Sbjct: 773  VDASSTRRHEGTGLGLAITAGLVDLFGGYINAESEWGRGSVFTVNLPFAVAAARL----- 827

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL---GIQVEVVSDQLQCLSQIA 602
                 +P  +    QG + LVVD   +  ++    +      G+  E     L  L   A
Sbjct: 828  -----EPKPLPINVQGARILVVDDNEVNRRILTEQLSLWGFDGVAAEGGGTGLAILEAAA 882

Query: 603  SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG--FQSKLFLLANSISSSRANTSTD 660
                 ++ ++++  + + + +      N  R+L     F     +   S+  S       
Sbjct: 883  DLGVTVDAVVLDYHMPDMNGA------NVARRLRADPRFVDLPIIFLTSMDISGTEKEFA 936

Query: 661  GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS---------LRHLLLGRK 711
             ++  + +MKP R+++L  ++   +           E+  +             +L+ +K
Sbjct: 937  ALNGQAHLMKPARANVLRNTVVEVVRARRVKQASEAEIARLQTEAAVPAPEPAPMLVPQK 996

Query: 712  -------ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 764
                   +L+ +DN VN  V    L+  G + + V+ G++A       H      MD+ M
Sbjct: 997  RADEFVDVLVAEDNEVNQIVFTQILQSSGLSFLVVKNGEEAV-AAWESHTPRIIMMDVSM 1055

Query: 765  PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 824
            P M+G EAT+ IRE E    +R                  VPI+ +TA  +++  E CL 
Sbjct: 1056 PVMNGHEATRTIREREKGQGHR------------------VPIIGVTAHALESDRELCLD 1097

Query: 825  SGMDGYVSKPFEAEQLYREVSRFF 848
            +GMD Y+SKP   E L  ++ ++ 
Sbjct: 1098 AGMDDYMSKPISPELLEEKIRQWL 1121


>gi|416810905|ref|ZP_11889530.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
           3256-97]
 gi|419121842|ref|ZP_13666789.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC5B]
 gi|320656477|gb|EFX24373.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|377964999|gb|EHV28431.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC5B]
          Length = 918

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 286/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V    +    +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRAQSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|442609712|ref|ZP_21024446.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
            luteoviolacea B = ATCC 29581]
 gi|441748728|emb|CCQ10508.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
            luteoviolacea B = ATCC 29581]
          Length = 1267

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 197/654 (30%), Positives = 300/654 (45%), Gaps = 113/654 (17%)

Query: 215  SIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKK---AEAADVAKSQFLATVSHEI 271
            S+ + +   +VG ++  T      V E +H   EL+K    AE A  AKS+FLA +SHEI
Sbjct: 702  SLPMSIDGEVVGRVWSFT-----DVTEAHHKQEELQKSQEIAEKASKAKSEFLANMSHEI 756

Query: 272  RTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 331
            RTPMNGVLGML++L DT+L+  Q   +R A  S + L++++N++LD +KV++GKLELE +
Sbjct: 757  RTPMNGVLGMLNLLRDTKLNDEQSHKLRLATTSAENLLTILNDILDFSKVDAGKLELEFI 816

Query: 332  SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT 391
             FN   +L ++    + K+ +K +EL + + D   + + GDP R RQI+ NL+GN+IKFT
Sbjct: 817  DFNPARLLGELAETMALKTSEKQLELILDLRDLPLQFVKGDPSRLRQILNNLIGNAIKFT 876

Query: 392  EKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFK 451
            ++G + V   + +E                              KG++            
Sbjct: 877  QQGEVIVRACMKQED-----------------------------KGWR------------ 895

Query: 452  SSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRM 511
                       SV DTG GI   AQ+R+F+ F Q   S +R  GGTG+GL+I K L   M
Sbjct: 896  --------FTCSVSDTGIGISKSAQNRLFSAFTQADASTTRHFGGTGLGLAICKQLCQLM 947

Query: 512  KGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS-EFQGMKALVVDPR 570
             G+I   S  N GSTF F   F      S+EH       QP ++   + + +  LVVD  
Sbjct: 948  NGDISLESKENEGSTFHFNLFFD-----SSEH-------QPITIPRVDLKSLHVLVVDDN 995

Query: 571  PIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--ASGSKIINMILVEQEVWEKDTSVSTLF 628
                +V    +   GI+   V    Q L  +      +  N+ +++ ++   D       
Sbjct: 996  QTNREVICGQLTNWGIESVAVDSGRQALETLNEYQNKRSFNLAILDMQMPSMDGEQLGRA 1055

Query: 629  VNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 688
            +    +    F S   ++  SI     +     +   +   KP+     A  L  A+ + 
Sbjct: 1056 IREQAR----FDSLKLVMMTSIGQLGESHRFADIGFNAYFPKPVT----AEDLFNALSLL 1107

Query: 689  NKGNIRNWELPSMSLRHLL--------------LGRKILIVDDNNVNLKVAAAGLKRYGA 734
            ++ N    +LP M  +HL+                 +IL+V+DN VN  VA+  L +   
Sbjct: 1108 SEENKARADLP-MITKHLISEVEPPPHHQSSLNSNARILLVEDNMVNQIVASKMLGQMSL 1166

Query: 735  AVVCVERGKKATELL-MPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVS 793
                   G  A E L      +D   MD QMPEMDGFEAT  IR                
Sbjct: 1167 TCDVANNGALALEALKQSTPSYDLVLMDCQMPEMDGFEATTAIR--------------AG 1212

Query: 794  IEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
            I   +N +   V I+AMTA+ + +    CL  GM+ YVSKP   + L   + ++
Sbjct: 1213 IAGEQNKA---VTIIAMTANAMHSDKLRCLEVGMNDYVSKPINLQTLRNTLEKW 1263


>gi|153830878|ref|ZP_01983545.1| sensor histidine kinase/response regulator, partial [Vibrio
           cholerae 623-39]
 gi|148873647|gb|EDL71782.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39]
          Length = 714

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 180/608 (29%), Positives = 291/608 (47%), Gaps = 112/608 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY++T + S   L+
Sbjct: 68  KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLL 127

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+ + I  ++P  +
Sbjct: 128 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 187

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +Q++TNL+GNSIKFTE+G+I V+V +                           
Sbjct: 188 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------------------- 220

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                ++   D+I+L   V DTG GI    Q+++F  F Q   S
Sbjct: 221 ---------------------RALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADAS 259

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNE-HNSQQM 548
           ISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT          N+ +N+  +
Sbjct: 260 ISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELPLNDGYNADSL 319

Query: 549 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSDQLQCLSQI---A 602
           N++             L+++P    A + +  + + G++V     + ++      +    
Sbjct: 320 NHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPEEQHVYDYVLLNL 368

Query: 603 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
           + SK  N  LV  E+W +     T        +  G  S    LA+ +            
Sbjct: 369 APSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQLMQRYP------- 413

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
                I KPL    L  +L        +  + N  LP      L L   ++ VDDN  NL
Sbjct: 414 --VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC--VMAVDDNPANL 464

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
           K+  A L+     VV    G++A E      QFD   MDIQMP MDG  A K I+++   
Sbjct: 465 KLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGVTACKAIKQL--- 520

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                       + Y +      P++A+TA  +    +  L++GMD Y++KP E E + +
Sbjct: 521 ------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDYLTKPIE-EHILQ 562

Query: 843 EVSRFFPP 850
           +V   + P
Sbjct: 563 QVLVHWSP 570


>gi|229524439|ref|ZP_04413844.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426]
 gi|229338020|gb|EEO03037.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426]
          Length = 927

 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRCYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 666

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 725 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 764

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 765 LTKPIE-EHILQQVLVHWSP 783


>gi|168703443|ref|ZP_02735720.1| sensory box histidine kinase/response regulator [Gemmata
           obscuriglobus UQM 2246]
          Length = 1018

 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 180/603 (29%), Positives = 291/603 (48%), Gaps = 103/603 (17%)

Query: 260 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
           KS+FLA +SHEIRTPMNG++GM ++L++T L   Q++ V   ++S  AL+++IN++LD +
Sbjct: 365 KSEFLANMSHEIRTPMNGIVGMTELLLETRLTPEQRESVGLVKSSADALLTVINDILDFS 424

Query: 320 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
           K+E+GKL+L+ + F+LR ++ D L   +G++  KG+ELA  +   +P+ L+GD  R RQ+
Sbjct: 425 KIEAGKLDLDPLPFSLRDMVGDTLKALAGRAHAKGLELACELLPDLPDVLLGDAHRLRQV 484

Query: 380 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
           +TNL+GN+IKFT++G + V    V E  D++ +             + V D         
Sbjct: 485 LTNLVGNAIKFTDRGEVLVRCERVPESGDAVVLR------------FSVTD--------- 523

Query: 440 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
                                      TG GIP E    +F PF Q   S +R +GGTG+
Sbjct: 524 ---------------------------TGIGIPGEKLKAVFEPFTQADGSTTRKYGGTGL 556

Query: 500 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV--FGNGSSTSNEHNSQQMNNQPNSVSS 557
           GL+I + LVG M G +   S    GSTF+F A      G+          + + P     
Sbjct: 557 GLTICQRLVGLMGGRLWAESESGKGSTFSFDARLELAKGAFARAAETPVDLTDFP----- 611

Query: 558 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI---ASGSKIINMILVE 614
                  L+VD      +V    ++  G +    +   + L ++   A+  K   ++L++
Sbjct: 612 ------ILIVDDNATNRRVLAETVRHWGAKPTCSASGPEGLDELRWAAATGKPFPLVLLD 665

Query: 615 QEVWEKDT-SVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLR 673
             +   D  S +   V +    G    + + +L ++     A    + + + + ++KP++
Sbjct: 666 GMMPGLDGFSTAERIVGDSELAG----TAVLMLTSADRQGDAARCRE-IGVAAYLVKPVK 720

Query: 674 SSMLAASLQRAMGVGNKGNIRNWELPSMSLR-HLLLGR---------KILIVDDNNVNLK 723
           S    A L RA+    +G       P+ S       GR         ++L+ +DN VN +
Sbjct: 721 S----AELSRAIAAALRGTCALNASPADSRTPREAAGRGPAPQGPRLRVLVAEDNPVNQR 776

Query: 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
           V    L+++G AV     G++A + L     FD   MD+QMPEMDGFEAT++IR  E   
Sbjct: 777 VVLRLLEKFGHAVTMTADGRQAVDAL-SREPFDIVLMDVQMPEMDGFEATQVIRRREAG- 834

Query: 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
                            +  H  I+AMTA  ++   E CL +GMD YVSKP +  +L R 
Sbjct: 835 -----------------TGRHTLIVAMTAHAMKGDRERCLIAGMDDYVSKPVQRSELTRV 877

Query: 844 VSR 846
           + R
Sbjct: 878 LDR 880


>gi|421329657|ref|ZP_15780167.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1042(15)]
 gi|395928191|gb|EJH38954.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1042(15)]
          Length = 921

 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 203 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 262

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 263 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 322

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 323 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 382

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 383 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 427

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 428 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 454

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 455 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 514

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 515 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 563

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 564 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 615

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 616 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 660

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 661 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 718

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 719 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 758

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 759 LTKPIE-EHILQQVLVHWSP 777


>gi|229514079|ref|ZP_04403541.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21]
 gi|229349260|gb|EEO14217.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21]
          Length = 927

 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 666

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 725 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 764

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 765 LTKPIE-EHILQQVLVHWSP 783


>gi|254291653|ref|ZP_04962441.1| sensor histidine kinase/response regulator [Vibrio cholerae
           AM-19226]
 gi|150422425|gb|EDN14384.1| sensor histidine kinase/response regulator [Vibrio cholerae
           AM-19226]
          Length = 927

 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 666

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 725 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 764

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 765 LTKPIE-EHILQQVLVHWSP 783


>gi|421337156|ref|ZP_15787617.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1048(21)]
 gi|395932255|gb|EJH42999.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1048(21)]
          Length = 912

 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 194 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 253

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 254 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 313

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 314 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 373

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 374 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 418

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 419 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 445

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 446 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 505

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 506 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 554

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 555 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 606

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 607 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 651

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 652 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 709

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 710 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 749

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 750 LTKPIE-EHILQQVLVHWSP 768


>gi|392982798|ref|YP_006481385.1| sensor/response regulator hybrid [Pseudomonas aeruginosa DK2]
 gi|419754930|ref|ZP_14281288.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PADK2_CF510]
 gi|384398748|gb|EIE45153.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PADK2_CF510]
 gi|392318303|gb|AFM63683.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           DK2]
          Length = 918

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 188/628 (29%), Positives = 290/628 (46%), Gaps = 109/628 (17%)

Query: 233 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 292
            +RI  ++E+     +  ++A   + AKS+FLA +SHEIRTP+NGVLGML +L DT LD 
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440

Query: 293 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 352
            Q  YV T  +SG AL+S+IN++LD A++ESGKL LE + F+L  +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500

Query: 353 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 412
           K + L + +   VP  L GDP R RQ++ NL+ N++KFT +GH+ V V            
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549

Query: 413 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 472
                                     + F++ G              L+ SV D+G GI 
Sbjct: 550 --------------------------RRFDEGGRE-----------RLLYSVSDSGIGIS 572

Query: 473 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532
            +AQ  +F  F Q   S +R +GG+G+GL+IS+ LV  M G I   S P  G+ F+    
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTQFSVDLP 632

Query: 533 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 591
                 +   +  +Q + ++P  ++SE      L +D         +  ++R G++VE  
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679

Query: 592 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 645
               +CL      + + +     +LV    W    S+   TL+           Q +  L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728

Query: 646 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 701
           L       +     +G+ + +    V +K LR ++L    +R    G        E P  
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERPDA 788

Query: 702 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT-ELLMPPHQFDACFM 760
                     IL+ +DN VN  V    L + G AV     G+ A  E L  P+      M
Sbjct: 789 PC--------ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840

Query: 761 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
           D +MPEMDGFEAT++IR  E              + +       VPI+A+TA ++     
Sbjct: 841 DGEMPEMDGFEATRLIRREER------------AQGWP-----RVPIVALTAHILDEHRR 883

Query: 821 ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             + +GMD Y+ KP +  +LY  + R  
Sbjct: 884 AGIEAGMDAYLGKPVDRAELYATLERLL 911


>gi|121728971|ref|ZP_01681975.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
 gi|147673482|ref|YP_001217955.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O395]
 gi|153826897|ref|ZP_01979564.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
 gi|227118895|ref|YP_002820791.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
 gi|422923746|ref|ZP_16956890.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           BJG-01]
 gi|424010437|ref|ZP_17753370.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-44C1]
 gi|424592152|ref|ZP_18031576.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1037(10)]
 gi|121628737|gb|EAX61204.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
 gi|146315365|gb|ABQ19904.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
 gi|149739260|gb|EDM53522.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
 gi|227014345|gb|ACP10555.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
 gi|341643549|gb|EGS67831.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           BJG-01]
 gi|408029783|gb|EKG66485.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           CP1037(10)]
 gi|408863066|gb|EKM02562.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-44C1]
          Length = 927

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 666

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 725 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 764

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 765 LTKPIE-EHILQQVLVHWSP 783


>gi|421352157|ref|ZP_15802522.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HE-25]
 gi|395952602|gb|EJH63216.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HE-25]
          Length = 916

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 317

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 318 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 509

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 510 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 558

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 559 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 610

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 611 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 655

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 656 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 713

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 714 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 753

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 754 LTKPIE-EHILQQVLVHWSP 772


>gi|218890338|ref|YP_002439202.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|420138641|ref|ZP_14646539.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CIG1]
 gi|421159027|ref|ZP_15618208.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
           25324]
 gi|218770561|emb|CAW26326.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|403248604|gb|EJY62162.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CIG1]
 gi|404548738|gb|EKA57680.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
           25324]
          Length = 918

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 188/628 (29%), Positives = 290/628 (46%), Gaps = 109/628 (17%)

Query: 233 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 292
            +RI  ++E+     +  ++A   + AKS+FLA +SHEIRTP+NGVLGML +L DT LD 
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440

Query: 293 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 352
            Q  YV T  +SG AL+S+IN++LD A++ESGKL LE + F+L  +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500

Query: 353 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 412
           K + L + +   VP  L GDP R RQ++ NL+ N++KFT +GH+ V V            
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549

Query: 413 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 472
                                     + F++ G              L+ SV D+G GI 
Sbjct: 550 --------------------------RRFDEGGRE-----------RLLYSVSDSGIGIS 572

Query: 473 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532
            +AQ  +F  F Q   S +R +GG+G+GL+IS+ LV  M G I   S P  G+ F+    
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632

Query: 533 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 591
                 +   +  +Q + ++P  ++SE      L +D         +  ++R G++VE  
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679

Query: 592 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 645
               +CL      + + +     +LV    W    S+   TL+           Q +  L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728

Query: 646 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 701
           L       +     +G+ + +    V +K LR ++L    +R    G        E P  
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERPDA 788

Query: 702 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT-ELLMPPHQFDACFM 760
                     IL+ +DN VN  V    L + G AV     G+ A  E L  P+      M
Sbjct: 789 PC--------ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840

Query: 761 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
           D +MPEMDGFEAT++IR  E              + +       VPI+A+TA ++     
Sbjct: 841 DGEMPEMDGFEATRLIRREER------------AQGWP-----RVPIVALTAHILDEHRR 883

Query: 821 ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             + +GMD Y+ KP +  +LY  + R  
Sbjct: 884 AGIEAGMDAYLGKPVDRAELYATLERLL 911


>gi|94264870|ref|ZP_01288645.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454691|gb|EAT04956.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1211

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 182/608 (29%), Positives = 288/608 (47%), Gaps = 104/608 (17%)

Query: 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ--DYVRTAQASGKALVSLINEVL 316
           +KS+FLA +SHEIRTPMN ++G+  + + ++     +  DY+     S   L++LIN++L
Sbjct: 413 SKSEFLANMSHEIRTPMNAIIGLGQLALKSQPPPPPRLHDYLEKITGSAATLLTLINDIL 472

Query: 317 DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 376
           D +K+E+GKL ++ V F+L  IL+ +  L +G++ +KG+EL   +    P  L+GDP R 
Sbjct: 473 DFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGDPHRL 532

Query: 377 RQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 436
            Q++ NL  N+IKFT++G + ++                          + VAD      
Sbjct: 533 GQVLINLTSNAIKFTQQGEVTIS--------------------------FEVAD------ 560

Query: 437 GFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 496
                            +AD + L V+V DTG G+  E   RIF PF Q   + +R HGG
Sbjct: 561 ----------------PTADPLILRVAVRDTGIGMSPEQIERIFQPFTQADGATTRKHGG 604

Query: 497 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS 556
           TG+GLSI+  LV  + GEI   S P  GSTF+FT + G        H   +       V 
Sbjct: 605 TGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFTCLLGR-------HEPHKALCPLPPV- 656

Query: 557 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK--------II 608
            + +G++ LVVD      +V R  +     +VE      + LS +A  ++        I+
Sbjct: 657 -DLRGLRVLVVDDNATARQVLRQTLASFSFRVEEADSGRRALSLLARAAEDGRPYELVIL 715

Query: 609 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 668
           + ++ E +  E   +++   +   + L       + L A+     R   +  G+     +
Sbjct: 716 DWVMPEFDGLECAAAIAADPLIEPQPL------LILLTAHGREEIREEAAGRGLR--HFL 767

Query: 669 MKPLRSSMLAASLQRAMGV------GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
            KP+  S L  ++    G        ++G  R+ EL  ++ R  L G ++L+ +DN +N 
Sbjct: 768 TKPVLPSTLYDTIMECFGQEGISRESDRGR-RSDEL-ELTAREKLAGSRLLVAEDNALNQ 825

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
           +VAA  L   G        G++A E       +D   MDIQMPEMDG++AT  IR +   
Sbjct: 826 QVAAELLAAVGIHCDLANNGREAVEQYR-RQTYDGVLMDIQMPEMDGYQATGAIRALP-- 882

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                             +   VPI+AMTA  +    E+CL +GMD ++ KP EA  LYR
Sbjct: 883 ------------------AGQQVPIIAMTAHALAGEREKCLAAGMDEHIPKPVEANLLYR 924

Query: 843 EVSRFFPP 850
            + R  PP
Sbjct: 925 TLLRLLPP 932


>gi|297581077|ref|ZP_06943002.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
 gi|297534903|gb|EFH73739.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
          Length = 927

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQTDKLPLC- 666

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 725 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 764

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 765 LTKPIE-EHILQQVLVHWSP 783


>gi|421179370|ref|ZP_15636962.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
 gi|404547238|gb|EKA56250.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
          Length = 918

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 188/628 (29%), Positives = 290/628 (46%), Gaps = 109/628 (17%)

Query: 233 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 292
            +RI  ++E+     +  ++A   + AKS+FLA +SHEIRTP+NGVLGML +L DT LD 
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440

Query: 293 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 352
            Q  YV T  +SG AL+S+IN++LD A++ESGKL LE + F+L  +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500

Query: 353 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 412
           K + L + +   VP  L GDP R RQ++ NL+ N++KFT +GH+ V V            
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549

Query: 413 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 472
                                     + F++ G              L+ SV D+G GI 
Sbjct: 550 --------------------------RRFDEGGRE-----------RLLYSVSDSGIGIS 572

Query: 473 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532
            +AQ  +F  F Q   S +R +GG+G+GL+IS+ LV  M G I   S P  G+ F+    
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632

Query: 533 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 591
                 +   +  +Q + ++P  ++SE      L +D         +  ++R G++VE  
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------FLQALLERWGLRVE-- 679

Query: 592 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 645
               +CL      + + +     +LV    W    S+   TL+           Q +  L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728

Query: 646 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 701
           L       +     +G+ + +    V +K LR ++L    +R    G        E P  
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERPDA 788

Query: 702 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT-ELLMPPHQFDACFM 760
                     IL+ +DN VN  V    L + G AV     G+ A  E L  P+      M
Sbjct: 789 PC--------ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840

Query: 761 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
           D +MPEMDGFEAT++IR  E              + +       VPI+A+TA ++     
Sbjct: 841 DGEMPEMDGFEATRLIRREER------------AQGWP-----RVPIVALTAHILDEHRR 883

Query: 821 ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             + +GMD Y+ KP +  +LY  + R  
Sbjct: 884 AGIEAGMDAYLGKPVDRAELYATLERLL 911


>gi|153214510|ref|ZP_01949419.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587]
 gi|124115312|gb|EAY34132.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587]
          Length = 927

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLTNTSLPKPQADKLPLC- 666

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 725 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 764

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 765 LTKPIE-EHILQQVLVHWSP 783


>gi|254236414|ref|ZP_04929737.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
 gi|126168345|gb|EAZ53856.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
          Length = 918

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 188/628 (29%), Positives = 290/628 (46%), Gaps = 109/628 (17%)

Query: 233 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 292
            +RI  ++E+     +  ++A   + AKS+FLA +SHEIRTP+NGVLGML +L DT LD 
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440

Query: 293 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 352
            Q  YV T  +SG AL+S+IN++LD A++ESGKL LE + F+L  +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500

Query: 353 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 412
           K + L + +   VP  L GDP R RQ++ NL+ N++KFT +GH+ V V            
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549

Query: 413 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 472
                                     + F++ G              L+ SV D+G GI 
Sbjct: 550 --------------------------RRFDEGGHE-----------RLLYSVSDSGIGIS 572

Query: 473 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532
            +AQ  +F  F Q   S +R +GG+G+GL+IS+ LV  M G I   S P  G+ F+    
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632

Query: 533 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 591
                 +   +  +Q + ++P  ++SE      L +D         +  ++R G++VE  
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679

Query: 592 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 645
               +CL      + + +     +LV    W    S+   TL+           Q +  L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728

Query: 646 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 701
           L       +     +G+ + +    V +K LR ++L    +R    G        E P  
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERPDA 788

Query: 702 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT-ELLMPPHQFDACFM 760
                     IL+ +DN VN  V    L + G AV     G+ A  E L  P+      M
Sbjct: 789 PC--------ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840

Query: 761 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
           D +MPEMDGFEAT++IR  E              + +       VPI+A+TA ++     
Sbjct: 841 DGEMPEMDGFEATRLIRREER------------AQGWP-----RVPIVALTAHILDEHRR 883

Query: 821 ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             + +GMD Y+ KP +  +LY  + R  
Sbjct: 884 AGIEAGMDAYLGKPVDRAELYATLERLL 911


>gi|399994994|ref|YP_006575226.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Phaeobacter gallaeciensis DSM 17395 = CIP
           105210]
 gi|398659542|gb|AFO93507.1| putative two-component sensor histidine kinase/response regulator
           hybrid protein [Phaeobacter gallaeciensis DSM 17395 =
           CIP 105210]
          Length = 759

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 176/614 (28%), Positives = 295/614 (48%), Gaps = 91/614 (14%)

Query: 240 EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 299
           +E  + + E +K A+ A+ AKS+FLA +SHEIRTPMNGV+GM +++++T+LD  Q  Y  
Sbjct: 220 DEREYALEEARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILETDLDEDQTMYAE 279

Query: 300 TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 359
           T   SG AL+++IN++L+ +K+E+GK+ELE   FNL+  ++DV++L S K+ +K VE+ +
Sbjct: 280 TISKSGSALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAAEKNVEVTL 339

Query: 360 YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSS 419
                +PE   GD GR RQI+TN+ GN++KFT KG+++            IEV  E    
Sbjct: 340 RYDPSLPECYEGDVGRIRQILTNVAGNAVKFTGKGYVY------------IEVSGETDDD 387

Query: 420 KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 479
           +  L                                      +SV DTG GIP +   RI
Sbjct: 388 RTALR-------------------------------------ISVTDTGAGIPEDRLDRI 410

Query: 480 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSST 539
           F  F Q   + +R + GTG+GL+IS  L+  M G I   S    GS F          S 
Sbjct: 411 FNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQSELGKGSVFAIDLPLRIRPS- 469

Query: 540 SNEHNSQQMNNQPNSV--SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
                      QP     + +F+G++ALVVD   +   +    +   G+Q        Q 
Sbjct: 470 -----------QPKRAQDARDFKGLRALVVDDLELNRIILTERLATWGVQSVAAGSAHQA 518

Query: 598 LSQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 654
           L  +          ++IL + ++   D       + ++ +    ++    ++ +S+ ++ 
Sbjct: 519 LELLLDSRHDGTHYDVILQDFQMPGMDGKELAERIRDIPE----YRDLPIVILSSVENTI 574

Query: 655 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR-KIL 713
              + + +    V +KPLR++ L + + R +    +   +   +P   +   ++   K+L
Sbjct: 575 DREAREHLGRCEVALKPLRAAQLQSVMSRVLETATEEAPQ--AVPPQGVETSVVPEVKLL 632

Query: 714 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
           + +DN  N  V +  LK     V+    G++A  +    H  D   MD+ MP  DG +AT
Sbjct: 633 LAEDNRTNQLVVSRMLKAAPIEVLIAANGEEAVTMFQ-EHHPDIVLMDMMMPVKDGIDAT 691

Query: 774 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
             IR++E   +N + R                P++A+TA+ +Q+  EECL +GMD ++SK
Sbjct: 692 AEIRQLEK--DNGLGR---------------CPVVALTANALQSHREECLAAGMDDFLSK 734

Query: 834 PFEAEQLYREVSRF 847
           P   + L   V ++
Sbjct: 735 PINKKALLGAVGKW 748


>gi|94263977|ref|ZP_01287779.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455649|gb|EAT05831.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1211

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 185/608 (30%), Positives = 286/608 (47%), Gaps = 104/608 (17%)

Query: 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ--DYVRTAQASGKALVSLINEVL 316
           +KS+FLA +SHEIRTPMN ++G+  + + ++     +  DY+     S   L++LIN++L
Sbjct: 413 SKSEFLANMSHEIRTPMNAIIGLGQLALKSQPPPPPRLYDYLEKITGSAATLLTLINDIL 472

Query: 317 DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 376
           D +K+E+GKL ++ V F+L  IL+ +  L +G++ +KG+EL   +   VP  L+GDP R 
Sbjct: 473 DFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDPTVPRLLVGDPHRL 532

Query: 377 RQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 436
            Q++ NL  N+IKFTE G + ++     EVVD                            
Sbjct: 533 GQVLINLTANAIKFTETGEVTISF----EVVDP--------------------------- 561

Query: 437 GFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 496
                            +A+ + L V+V DTG G+  E   RIF PF Q   + +R HGG
Sbjct: 562 -----------------TAEPLTLRVAVRDTGIGMSPEQIERIFQPFTQADGATTRKHGG 604

Query: 497 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS 556
           TG+GLSI+  LV  + GEI   S P  GSTF+FT + G        H   +       V 
Sbjct: 605 TGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFTCLLGR-------HEPHKALCPLPPV- 656

Query: 557 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK--------II 608
            + +G++ LVVD      +V R  +     +VE      + LS +A  ++        I+
Sbjct: 657 -DLRGLRVLVVDDNATARQVLRQTLASFSFRVEEADSGRRALSLLARAAEEGQPYELVIL 715

Query: 609 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 668
           + ++ E +  E   +++   +   + L       + L A+     R   +  G+     +
Sbjct: 716 DWVMPEFDGLECAAAIAADPLIEPQPL------LILLTAHGREEIREEAAGRGLR--HFL 767

Query: 669 MKPLRSSMLAASLQRAMGV------GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
            KP+  S L  ++    G        + G  R+ EL S + R  L G ++L+ +DN +N 
Sbjct: 768 TKPVLPSTLYDTIMECFGQEGISRESDPGQ-RSDELESAA-REKLAGSRLLVAEDNALNQ 825

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
           +VAA  L   G        G++A E       +D   MDIQMPEMDG++AT  IR +   
Sbjct: 826 QVAAELLAVVGIHCDLANNGREAVEQYR-RQTYDGVLMDIQMPEMDGYQATGAIRALP-- 882

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                                 VPI+AMTA  +    E+CL +GMD ++ KP EA  LYR
Sbjct: 883 ------------------VGQQVPIIAMTAHALAGEREKCLAAGMDEHIPKPVEANLLYR 924

Query: 843 EVSRFFPP 850
            + R  PP
Sbjct: 925 TLLRLLPP 932


>gi|15642449|ref|NP_232082.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|153819819|ref|ZP_01972486.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
           8457]
 gi|153823739|ref|ZP_01976406.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
 gi|227082574|ref|YP_002811125.1| hybrid sensory histidine kinase BarA [Vibrio cholerae M66-2]
 gi|229507487|ref|ZP_04396992.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286]
 gi|229512318|ref|ZP_04401797.1| BarA sensory histidine kinase [Vibrio cholerae B33]
 gi|229519454|ref|ZP_04408897.1| BarA sensory histidine kinase [Vibrio cholerae RC9]
 gi|229606992|ref|YP_002877640.1| hybrid sensory histidine kinase BarA [Vibrio cholerae MJ-1236]
 gi|254849577|ref|ZP_05238927.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
 gi|298500190|ref|ZP_07009995.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
 gi|360036328|ref|YP_004938091.1| two-component system, NarL family, sensor histidine kinase BarA
           [Vibrio cholerae O1 str. 2010EL-1786]
 gi|418335452|ref|ZP_12944361.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-06A1]
 gi|418350744|ref|ZP_12955475.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-43A1]
 gi|424599923|ref|ZP_18039101.1| signal transduction histidine-protein kinase BarA [Vibrio Cholerae
           CP1044(17)]
 gi|424657564|ref|ZP_18094848.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-81A2]
 gi|449055106|ref|ZP_21733774.1| BarA sensory histidine kinase [Vibrio cholerae O1 str. Inaba G4222]
 gi|9657030|gb|AAF95595.1| sensor histidine kinase/response regulator [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126509638|gb|EAZ72232.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
           8457]
 gi|126518744|gb|EAZ75967.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
 gi|227010462|gb|ACP06674.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2]
 gi|229344143|gb|EEO09118.1| BarA sensory histidine kinase [Vibrio cholerae RC9]
 gi|229352283|gb|EEO17224.1| BarA sensory histidine kinase [Vibrio cholerae B33]
 gi|229354992|gb|EEO19913.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286]
 gi|229369647|gb|ACQ60070.1| BarA sensory histidine kinase [Vibrio cholerae MJ-1236]
 gi|254845282|gb|EET23696.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
 gi|297540883|gb|EFH76937.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
 gi|356416487|gb|EHH70118.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-06A1]
 gi|356445240|gb|EHH98049.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-43A1]
 gi|356647482|gb|AET27537.1| two-component system, NarL family, sensor histidine kinase BarA
           [Vibrio cholerae O1 str. 2010EL-1786]
 gi|408040649|gb|EKG76820.1| signal transduction histidine-protein kinase BarA [Vibrio Cholerae
           CP1044(17)]
 gi|408051886|gb|EKG86959.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HC-81A2]
 gi|448265148|gb|EMB02383.1| BarA sensory histidine kinase [Vibrio cholerae O1 str. Inaba G4222]
          Length = 927

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 666

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 725 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 764

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 765 LTKPIE-EHILQQVLVHWSP 783


>gi|422911277|ref|ZP_16945903.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HE-09]
 gi|341631796|gb|EGS56673.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HE-09]
          Length = 916

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 194/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 317

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 318 LQTIEKSANNLLAIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 509

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 510 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 558

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 559 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 610

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 611 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLTNTSLPKPQADKLPLC- 655

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     V+    G++A E      QFD   MDIQMP MDG 
Sbjct: 656 -VMAVDDNPANLKLITALLQERVEYVISCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDGV 713

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 714 TACKAIKQL---------------KGYRD-----TPVIAVTAHAMAGERDRLLKAGMDDY 753

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 754 LTKPIE-EHILQQVLVHWSP 772


>gi|350532413|ref|ZP_08911354.1| hybrid sensory histidine kinase BarA [Vibrio rotiferianus DAT722]
          Length = 932

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 198/694 (28%), Positives = 319/694 (45%), Gaps = 147/694 (21%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  R  L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + +  ++P+ L+GDP R +QI+TNL+GNSIKFTE+G+I ++V +  +  DS+E++    
Sbjct: 389 TLKVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQ---- 444

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                                         V DTG GI    Q+
Sbjct: 445 --------------------------------------------FMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT      S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRL---S 517

Query: 538 STSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 594
           ST            P S   E +   G + L+V+P    A V++  + + GI V   S  
Sbjct: 518 STE----------MPMSDLIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRS-- 565

Query: 595 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG----CGFQSKLFLLANSI 650
              L +       + + L   + ++ + SV+T ++   +++      G  S    LA+ +
Sbjct: 566 --SLPENDENYDYVLLNLAANQTYD-EQSVAT-WIEQAKRMAPSVIMGTPSTELALADQV 621

Query: 651 SSSR---------------ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRN 695
            +                  +  TD V  P  ++ P+                    + N
Sbjct: 622 MNDHQIQCLTKPLSRRKLLQSLITDHVETPQAVIAPIEP------------------VEN 663

Query: 696 WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF 755
             LP            +L VDDN  NLK+ +A LK     V     G++A   L    ++
Sbjct: 664 ERLP----------LTVLAVDDNPANLKLISALLKERVETVTACSNGQQAVN-LATEKKY 712

Query: 756 DACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815
           D  FMDIQMP MDG  A + I+E+E N +                     P++A+TA  +
Sbjct: 713 DLIFMDIQMPLMDGVTACQHIKELELNKDT--------------------PVIAVTAHAM 752

Query: 816 QATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849
               +  L +GMD Y++KP E   L + +  + P
Sbjct: 753 AGERDRLLAAGMDDYLTKPIEEHVLQQVLVHWNP 786


>gi|119716209|ref|YP_923174.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
 gi|119536870|gb|ABL81487.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
          Length = 1072

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 189/612 (30%), Positives = 285/612 (46%), Gaps = 88/612 (14%)

Query: 233 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 292
           + R+A+ E     + + +  A AA   KS+FLAT+SHEIRTP+NGV+G+ D+L+ T LD 
Sbjct: 393 LGRVAERERAQRELADARDVAMAASRQKSEFLATMSHEIRTPLNGVIGLNDLLLRTPLDP 452

Query: 293 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 352
            Q       Q + +AL+ +IN++LD +K+E+GKLELE + F +R + D V SL    ++ 
Sbjct: 453 DQLRLASGVQVASRALLGVINDILDFSKIEAGKLELERLDFEVRGVFDQVASLLGEAARA 512

Query: 353 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 412
           KG+EL V     VPE L GDP R  Q+ITNL  N++KFTE+G +F+              
Sbjct: 513 KGLELIVSCHSEVPEVLRGDPTRLAQVITNLGSNAVKFTEEGEVFI-------------- 558

Query: 413 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 472
                  + T S  P                           A    L VSV DTG G+P
Sbjct: 559 -------RATASPGP---------------------------AGRTRLHVSVTDTGVGVP 584

Query: 473 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532
                 +F  F+Q   S +R  GGTG+GL+IS+ +V  + GEIG    P  GS F FTA 
Sbjct: 585 ANDVGELFEAFIQADASTTRRFGGTGLGLAISREIVQALGGEIGMEPNPGGGSVFWFTAD 644

Query: 533 FGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 592
                         +++       S   G + LVVD       +    +    I+V   S
Sbjct: 645 L-------ESPGGPRVDADDEYARSWLSGRRVLVVDDNQHNRLILEEQLGWWRIRVAAAS 697

Query: 593 DQLQCLSQIASGSKI---INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 649
              +    +A+          +L++  +  +D         +LR     +  ++ +LA+ 
Sbjct: 698 SADEAEQAVAAAHAAGDPFEAVLLDLSMPGRD---GLDLARSLRA-EPSYDLRVIMLASG 753

Query: 650 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM-GVGNKGNIRNWELPSMSLRHLLL 708
            + S  +  T G  I + + KP+  + + A+L R + GV  +      ELP +       
Sbjct: 754 STPSAWDLRTAG--IVACLTKPVLGAEVRAALLRHLAGVEPRPEP---ELPVVGPDPGPR 808

Query: 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768
            R +L+V+DN VN  VA   L+  G      E G  A   L   H FD   MD+QMP MD
Sbjct: 809 AR-VLVVEDNEVNQLVAVGLLEALGYRARVAEDGAAALTALAEEH-FDLVLMDVQMPRMD 866

Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
           G+ AT+ IR  E +  +R+                  P++AMTA  ++   E C+ +GMD
Sbjct: 867 GYAATRAIRAGESDGRSRL------------------PVVAMTAAAVEGERERCVAAGMD 908

Query: 829 GYVSKPFEAEQL 840
            +++KP +A  L
Sbjct: 909 DFLTKPVDAGAL 920


>gi|254242148|ref|ZP_04935470.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
 gi|126195526|gb|EAZ59589.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
          Length = 918

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 188/628 (29%), Positives = 290/628 (46%), Gaps = 109/628 (17%)

Query: 233 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 292
            +RI  ++E+     +  ++A   + AKS+FLA +SHEIRTP+NGVLGML +L DT LD 
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440

Query: 293 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 352
            Q  YV T  +SG AL+S+IN++LD A++ESGKL LE + F+L  +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500

Query: 353 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 412
           K + L + +   VP  L GDP R RQ++ NL+ N++KFT +GH+ V V            
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549

Query: 413 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 472
                                     + F++ G              L+ SV D+G GI 
Sbjct: 550 --------------------------RRFDEGGHE-----------RLLYSVSDSGIGIS 572

Query: 473 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532
            +AQ  +F  F Q   S +R +GG+G+GL+IS+ LV  M G I   S P  G+ F+    
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632

Query: 533 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 591
                 +   +  +Q + ++P  ++SE      L +D         +  ++R G++VE  
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679

Query: 592 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 645
               +CL      + + +     +LV    W    S+   TL+           Q +  L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728

Query: 646 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 701
           L       +     +G+ + +    V +K LR ++L    +R    G        E P  
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERPDA 788

Query: 702 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT-ELLMPPHQFDACFM 760
                     IL+ +DN VN  V    L + G AV     G+ A  E L  P+      M
Sbjct: 789 PC--------ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840

Query: 761 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
           D +MPEMDGFEAT++IR  E              + +       VPI+A+TA ++     
Sbjct: 841 DGEMPEMDGFEATRLIRREER------------AQGWP-----RVPIVALTAHILDEHRR 883

Query: 821 ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             + +GMD Y+ KP +  +LY  + R  
Sbjct: 884 AGIEAGMDAYLGKPVDRAELYATLERLL 911


>gi|288939999|ref|YP_003442239.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895371|gb|ADC61207.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1023

 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 184/635 (28%), Positives = 300/635 (47%), Gaps = 91/635 (14%)

Query: 226 GHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 285
           GH+ +    R A++E         K  AE A+ AKS FL+ +SHEIRTPMN ++G   ++
Sbjct: 245 GHLEELVATRTAELEA-------AKVAAEGANRAKSAFLSNMSHEIRTPMNAIIGYSHLI 297

Query: 286 MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 345
               L   Q + +     S + L+ +IN++LD +K+E+ KL LEA  F    +LD V +L
Sbjct: 298 RQEPLTPRQTEQLNRLNDSAQHLLQIINDILDLSKIEAEKLTLEARDFEPARVLDHVFNL 357

Query: 346 FSGKSQDKGVELAVYIS-DRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 404
            + + Q K  EL V +  D VP  L GD  R  QI+ NL+ N++KFTE+G I + VY + 
Sbjct: 358 VADQIQAK--ELNVLVDLDHVPLRLHGDGVRLGQILLNLISNAVKFTERGQIAIAVYPM- 414

Query: 405 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSV 464
                                 P+A               G+  P      + + L  +V
Sbjct: 415 --------------------SVPLA---------------GAADP------ETLWLRWTV 433

Query: 465 EDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 524
            DTG G+  E  +R+F  F Q   S +R +GGTG+GL+ISK L   M G IG  S P  G
Sbjct: 434 RDTGIGMTAEQLARLFRAFEQADGSTTRRYGGTGLGLAISKRLTELMGGRIGASSQPGTG 493

Query: 525 STFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL 584
           S F     F      ++          P+    + +G +ALV+D  P    +  + ++ L
Sbjct: 494 SEFWLEIPFEPAREPAH----------PDPKLEDLRGRRALVIDDHPEARAILIHLLESL 543

Query: 585 GIQVEVVSDQLQCLSQIASGSK---IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641
           G++ E V+  L+ +S +    +     ++I ++   W+         V  L+ L   +  
Sbjct: 544 GLRAEAVAGGLEGVSAVIEADRRGDPYHLITID---WKMPDMDGLETVRRLQALPVRYHP 600

Query: 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM-GVGNKGNIRNWELPS 700
           +L L+  +      ++  + +    V+ KP+  S L  +L  A+ G  +   +++     
Sbjct: 601 EL-LMVTAYGDQLPDSCREDMGAIQVLAKPVTPSGLHDALAAALQGARDLPVVQDRVDTP 659

Query: 701 MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
                 L G +IL+ +DN +N +V    L+  GA V   E G++A E +   + +D   M
Sbjct: 660 ADHGERLRGARILVAEDNEINQEVILQLLQATGARVTLAENGREALEQVC-ANAYDLVLM 718

Query: 761 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
           D+QMP MDG EAT+ IR           R E             +PILAMTA+  ++   
Sbjct: 719 DVQMPVMDGLEATRAIRA----------RAEYR----------ELPILAMTANAFESDRR 758

Query: 821 ECLRSGMDGYVSKPFEAEQLYREVSRFFPPIPDRS 855
           +C+ +GM+ +++KP E E+L   ++R+ P + +R+
Sbjct: 759 QCIEAGMNDHLAKPIEPERLTETLARWLPHVLERT 793


>gi|254444664|ref|ZP_05058140.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198258972|gb|EDY83280.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 810

 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 194/650 (29%), Positives = 302/650 (46%), Gaps = 110/650 (16%)

Query: 225 VGHIFQATVNR-------IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 277
           V H      NR       + + + D   +   + KAE+A+ AKSQFLA +SHEIRTPMNG
Sbjct: 252 VAHDSHGDANRLLGSMTDVTQRKRDEQALQVARDKAESANRAKSQFLAVMSHEIRTPMNG 311

Query: 278 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337
           V+GM  +L  T+LD  Q  Y+RT ++SG++L+++I+EVL  +K+E+G +ELE  +FN+  
Sbjct: 312 VMGMAALLASTKLDEEQSAYLRTIESSGESLLNIIDEVLSFSKLEAGNIELEQNAFNIGE 371

Query: 338 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 397
            L   L + S  +++KG+EL + I   +P  +IGD  + +Q++ NL+GN++KFT  G I 
Sbjct: 372 CLTSALQIISPMAKEKGLELILNIDSSLPLQVIGDESKIKQVLVNLLGNAVKFTHAGEI- 430

Query: 398 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 457
                  E+    E   + ++ +NT                                  L
Sbjct: 431 -------ELRAKAENHEDPTTGENT---------------------------------KL 450

Query: 458 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 517
           I L  +V DTG GI  +A   +F PF Q   S +R +GGTG+GL+IS+ L+  M G I  
Sbjct: 451 IKL--TVRDTGIGISPDAIKSLFEPFTQEDASTTRRYGGTGLGLAISRSLLELMGGAIEI 508

Query: 518 VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 577
            S P  GSTFT  A+       S             S S   QG + L+           
Sbjct: 509 DSAPGEGSTFTCAAILQKEGEFS-----------ALSPSPRLQGKRILL----------- 546

Query: 578 RYHIQRLGIQVEVVSDQLQCLS-QIASGSKIINMILVEQEVWEKDTSV--STLFVNNLRK 634
              IQ  G   + ++D L  +  Q    S+  ++  + Q+  E D ++   TL   +  +
Sbjct: 547 ---IQDEGAAYDALTDMLLAIGLQATRASQSEHIFQLLQQEPEFDCAIIDKTLKTEDGAR 603

Query: 635 LGCGFQSKL------FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM--- 685
           L    + +       F+    I      +  D +     I KP   + L  +L +A+   
Sbjct: 604 LARRIKLEFTRYRIPFIGLCPIGEPEGGSREDRL-FSYRITKPFSPAGLKLALHKAILKE 662

Query: 686 GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA 745
           G  +      + LP+ + R       +L+V+DN VN  VA   LK+ G      E G  A
Sbjct: 663 GGNSDFAPTAYRLPTDAKRR---DETVLLVEDNQVNRLVATQLLKKLGFIADSAESGFDA 719

Query: 746 TELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 805
            +  +   ++D  FMD+QMP ++GFE  + I         R R    + + +        
Sbjct: 720 LDSCL-EKKYDIIFMDLQMPGINGFETVERI---------RARNPNTAPQPW-------- 761

Query: 806 PILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIPDRS 855
            I+A+TAD +Q   E+CL +GMD Y++KP   E L   + R    I +RS
Sbjct: 762 -IIALTADSMQGDREKCLEAGMDDYIAKPIRPENLQESLDRALEAIAERS 810


>gi|251786060|ref|YP_003000364.1| BarA sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253772363|ref|YP_003035194.1| hybrid sensory histidine kinase BarA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162712|ref|YP_003045820.1| hybrid sensory histidine kinase BarA [Escherichia coli B str.
           REL606]
 gi|254289471|ref|YP_003055219.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli BL21(DE3)]
 gi|242378333|emb|CAQ33110.1| BarA sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253323407|gb|ACT28009.1| Hpt sensor hybrid histidine kinase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974613|gb|ACT40284.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli B str. REL606]
 gi|253978778|gb|ACT44448.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli BL21(DE3)]
          Length = 918

 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 286/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP+     L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPATDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|430004422|emb|CCF20217.1| Sensor protein [Rhizobium sp.]
          Length = 1223

 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 186/646 (28%), Positives = 301/646 (46%), Gaps = 116/646 (17%)

Query: 231  ATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL 290
            A    +  V+E    +  L ++AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L  ++L
Sbjct: 656  AVFTDVTDVKEREAELTRLVERAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSDL 715

Query: 291  DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKS 350
            D  Q+ ++     SG AL+++IN++LD +K+++G+++L    F+    ++DV +L S  +
Sbjct: 716  DTRQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAPFDPVEAIEDVATLLSSSA 775

Query: 351  QDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 410
             +K +EL V     V ET++GD GRFRQIITNL+GN++KFTEKGH+F            I
Sbjct: 776  AEKDIELIVRGDASVKETVLGDAGRFRQIITNLVGNAVKFTEKGHVF------------I 823

Query: 411  EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
            ++ +E  S  + +                                    L V +EDTG G
Sbjct: 824  DLHSEAVSDTDMM------------------------------------LTVRIEDTGLG 847

Query: 471  IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT-- 528
            IP E    +F  F QV  S +R H GTG+GL+I+  LV    G I   S    GS FT  
Sbjct: 848  IPDEKLKSVFEKFSQVDTSSTRRHEGTGLGLAITAGLVELFGGHIEVTSEVGRGSVFTVH 907

Query: 529  --FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586
              F  V   G++T    N+               G + LV+D   +  ++    +   G 
Sbjct: 908  LPFPVVSERGTNTVLPINT--------------AGARVLVIDDNAVNRRILTEQLTMWGF 953

Query: 587  QVEVVSDQLQCLSQIASGSK---IINMILVEQEVWEKDTSVSTLFVNNLRK---LGCGFQ 640
                     + L+ +   S+   +I+ ++++  + E +   +   +   R+   LG  F 
Sbjct: 954  DTVAADGGAEGLAFMNEASRLGLVIDAVVLDYHMPEMNGLDAARHIRADRRLDDLGIIFL 1013

Query: 641  SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWE 697
            + + +  +    +  N       I + +MKP R+++L A++    R++ +  +       
Sbjct: 1014 TSMDMAGDENLFAELN-------IQAHLMKPARANLLRATIIDVVRSVRMKRRTAPVTAA 1066

Query: 698  LPSMSLRHLLL---------------GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG 742
              +++   L+L                  +L+ +DN VN  V    L+  G     VE G
Sbjct: 1067 AQAVAAPQLVLPVEGAASTPVVRSLPALDVLVAEDNEVNQIVFTQILQGTGWRFEIVENG 1126

Query: 743  KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 802
             KA E            MD+ MP M+G +AT+ IRE+E                    + 
Sbjct: 1127 AKAVEAWQEKDPA-LILMDVSMPVMNGHQATQKIRELEKQ------------------AG 1167

Query: 803  FHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             HVPI+ +TA  +++  E CL +GMD Y+SKP   E L +++  + 
Sbjct: 1168 GHVPIIGVTAHALESDKELCLAAGMDDYMSKPISPELLEQKIKAWL 1213


>gi|423141457|ref|ZP_17129095.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Salmonella enterica subsp. houtenae str. ATCC
           BAA-1581]
 gi|379050629|gb|EHY68521.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Salmonella enterica subsp. houtenae str. ATCC
           BAA-1581]
          Length = 918

 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 181/616 (29%), Positives = 290/616 (47%), Gaps = 128/616 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         V  +G ST+  
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              +    +PN+ +++            +V  P      ++ Y I  L + V   E ++ 
Sbjct: 535 AGKRLAYVEPNATAAQCTLDLLNDTPVEVVYSPTFSALPLAHYDIMMLSVPVTFREPLTM 594

Query: 594 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 653
           Q + L++ AS +  +                       L  L C  Q      A  +   
Sbjct: 595 QHERLAKAASMTDFL-----------------------LLALPCHAQIN----AEKLKQG 627

Query: 654 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 713
            A          + ++KPL S+ L  +L     + +       +   +++        ++
Sbjct: 628 GA---------AACLLKPLTSTRLLPALTEYCQLNHHAEPLLMDASKIAM-------TVM 671

Query: 714 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
            VDDN  NLK+  A L+     V   + G +A +      QFD   MDIQMP+MDG  A 
Sbjct: 672 AVDDNPANLKLIGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRAC 730

Query: 774 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
           ++I ++ H                        P++A+TA  +    E+ L +GM+ Y++K
Sbjct: 731 ELIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAK 770

Query: 834 PFEAEQLYREVSRFFP 849
           P E E+L+  + R+ P
Sbjct: 771 PIEEEKLHNLLLRYKP 786


>gi|254483091|ref|ZP_05096325.1| Two component regulator three Y motif family [marine gamma
            proteobacterium HTCC2148]
 gi|214036613|gb|EEB77286.1| Two component regulator three Y motif family [marine gamma
            proteobacterium HTCC2148]
          Length = 1484

 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 188/600 (31%), Positives = 289/600 (48%), Gaps = 105/600 (17%)

Query: 238  KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
            KV+E    + + +K AE+A+ AKS FLAT+SHEIRTPM+G++GM ++L+ T+L   Q+ +
Sbjct: 831  KVQERTRELQDAQKSAESANQAKSDFLATMSHEIRTPMHGMIGMTELLLHTDLSEQQKQF 890

Query: 298  VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
             R A  SG++L+SLINE+LD +K+E+ K+ELE + F+L  ++D++  L    +  KG+ L
Sbjct: 891  ARAAHNSGESLLSLINEILDFSKIEASKVELENIEFDLVELIDEICYLQGEPAARKGLAL 950

Query: 358  AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
                    P+TL+GDP + RQ++ NL+ N+IKFT  G+I V V                 
Sbjct: 951  NSIFDQTPPKTLLGDPTKVRQVVMNLVSNAIKFTHTGNIDVCV----------------- 993

Query: 418  SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
            + KN+       DR  +                        ++ +SV+DTG G+    Q+
Sbjct: 994  TYKNSED-----DRNKN------------------------DVTISVKDTGIGMDAATQN 1024

Query: 478  RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
            R+F  F Q   S +R +GGTG+GLSISK+ +  M G I   S PNIG+  + T  F    
Sbjct: 1025 RVFEVFTQADTSTTREYGGTGLGLSISKHYIELMNGTIAIESQPNIGTDLSVTVPF---- 1080

Query: 538  STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 597
               +    Q +   PN         +A+ +       K+   H+  LG + E   +    
Sbjct: 1081 ---SVVQPQTIKIDPN--------RQAITICSNESVTKMINSHLSLLGWRAEAEKN---- 1125

Query: 598  LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 657
                 + +KI  +++++ +  + +  + +   N+    G        LL  SI+ SR ++
Sbjct: 1126 ----LNATKIPELVVIDADALDSNPEILSTIRNSDVTHG--------LLVCSINQSRLDS 1173

Query: 658  STDGVSIPSVIMKPL-RSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              D       I KP+ R S+  A  +       K    + E    S   L     IL+ +
Sbjct: 1174 VFDNW---QRISKPVTRDSLETAITKHLAQKPRKPQFSSIEHDEDSGPRL----NILVAE 1226

Query: 717  DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ-FDACFMDIQMPEMDGFEATKI 775
            D   N K+    L   G  V  V  GK+A E +   HQ +D  FMD QMP MDGFEAT+ 
Sbjct: 1227 DVETNRKIIKEMLAILGHNVEVVINGKQAFEKV--GHQSYDLIFMDCQMPIMDGFEATEN 1284

Query: 776  IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
            IR +E        RG  +            PI+A+TA + +   + C  SGM+ YV KPF
Sbjct: 1285 IRNLEKT------RGRNA-----------TPIIALTAGLDKKDRQRCETSGMNHYVGKPF 1327


>gi|444426173|ref|ZP_21221597.1| hybrid sensory histidine kinase BarA [Vibrio campbellii CAIM 519 =
           NBRC 15631]
 gi|444240586|gb|ELU52124.1| hybrid sensory histidine kinase BarA [Vibrio campbellii CAIM 519 =
           NBRC 15631]
          Length = 932

 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 199/679 (29%), Positives = 321/679 (47%), Gaps = 117/679 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  R  L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + +  ++P+ L+GDP R +QI+TNL+GNSIKFTE+G+I ++V +  +  DS+E++    
Sbjct: 389 TLKVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQ---- 444

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                                         V DTG GI    Q+
Sbjct: 445 --------------------------------------------FMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTVRL---- 516

Query: 538 STSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 594
                 +S +M   P S   E +   G + L+V+P    A V++  + + GI V   S  
Sbjct: 517 ------HSTEM---PMSDLIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRS-- 565

Query: 595 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG----CGFQSKLFLLANSI 650
              L +       + + L   + ++ D SV+  ++   +++      G  S    LA+ +
Sbjct: 566 --SLPENDENYDYVLLNLAANQTYD-DQSVAA-WIEQAKRMAPSVIMGTPSTELALADQV 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
            +               + KPL    L  SL        +  I   E P ++ R   L  
Sbjct: 622 MNDHQ---------IQCLTKPLSRRKLLQSLITDHVETPQAVIAPIE-PVVNER---LPL 668

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            +L VDDN  NLK+ +A L+     V     G++A   L    ++D  FMDIQMP MDG 
Sbjct: 669 TVLAVDDNPANLKLISALLRERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGV 727

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A + I+E+E N +                     P++A+TA  +    +  L +GMD Y
Sbjct: 728 TACQHIKELELNKDT--------------------PVIAVTAHAMAGERDRLLAAGMDDY 767

Query: 831 VSKPFEAEQLYREVSRFFP 849
           ++KP E   L + +  + P
Sbjct: 768 LTKPIEEHVLQQVLVHWNP 786


>gi|213416867|ref|ZP_03350011.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 735

 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 176/605 (29%), Positives = 287/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 149 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 208

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VPE +
Sbjct: 209 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENV 268

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 269 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 325

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 326 DQSRLFQAFR---------------------------------------------QADAS 340

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 341 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 387

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +     ++   G +   ++P    A+ +   +    ++V + S     L      
Sbjct: 388 --PNVIIDGPSTACLAGKRLAYIEPNATAAQCTLDLLSDTPVEV-IYSPTFSALPLAHYD 444

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             I+++ +  +E          L + + R       +   LLA    +            
Sbjct: 445 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 495

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +       +   +++        ++ VDDN  NLK+
Sbjct: 496 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 548

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 549 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 604

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E E+L+  +
Sbjct: 605 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLL 647

Query: 845 SRFFP 849
            R+ P
Sbjct: 648 LRYKP 652


>gi|28899341|ref|NP_798946.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260878968|ref|ZP_05891323.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AN-5034]
 gi|260898315|ref|ZP_05906811.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus Peru-466]
 gi|28807577|dbj|BAC60830.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085236|gb|EFO34931.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus Peru-466]
 gi|308090507|gb|EFO40202.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AN-5034]
          Length = 932

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 182/607 (29%), Positives = 290/607 (47%), Gaps = 108/607 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY++T + S   L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDYLQTIEKSANNLL 340

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+E+GKL LE + F+ R  L++V++L +  + +KG+E+ + +  ++P  L
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +QI+TNL+GNSIKFTE+G+I V+V +  +  DS+E++                
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQ---------------- 444

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                             V DTG GI    Q+++F  F Q   S
Sbjct: 445 --------------------------------FMVRDTGIGISERQQAQLFQAFSQADAS 472

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT             NS +M 
Sbjct: 473 ISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRL----------NSTEM- 521

Query: 550 NQPNSVSSEFQ---GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
             P S   E +   G + L+V+P    A V++  + + GI V   S     L +      
Sbjct: 522 --PMSDLIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRS----SLPENEEHYD 575

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLG----CGFQSKLFLLANSISSSRANTSTDGV 662
            + + L   + +++ +  +  ++   +++      G  S    LA+ I +          
Sbjct: 576 YVLLNLAANQTYDEQSVAA--WIEQAKRMAPSVIMGTPSTELALADQIMTEHQ------- 626

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
                + KPL    L  SL        +        P  +     L   +L VDDN  NL
Sbjct: 627 --IQCLTKPLSRRKLLQSLINEHVEAPQA----ITAPVETEESERLPLTVLAVDDNPANL 680

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
           K+ +A LK     V     G++A   L    ++D  FMDIQMP MDG  A + I+E+E N
Sbjct: 681 KLISALLKERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGVTACQNIKELELN 739

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
            +                     P++A+TA  +    +  L +GMD Y++KP E   L +
Sbjct: 740 KD--------------------TPVIAVTAHAMAGERDRLLAAGMDDYLTKPIEEHVLQQ 779

Query: 843 EVSRFFP 849
            +  + P
Sbjct: 780 VLVHWNP 786


>gi|381157298|ref|ZP_09866532.1| PAS domain S-box [Thiorhodovibrio sp. 970]
 gi|380881161|gb|EIC23251.1| PAS domain S-box [Thiorhodovibrio sp. 970]
          Length = 1375

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 172/597 (28%), Positives = 285/597 (47%), Gaps = 91/597 (15%)

Query: 260  KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
            KS+FLA +SHEIRTP+N V+G+ ++ + TELD  Q+DY+   + S +AL+ ++N++LD +
Sbjct: 752  KSEFLANMSHEIRTPLNAVIGLTELTLSTELDARQRDYLDKVRHSSRALLGILNDILDYS 811

Query: 320  KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
            K+E+G++ LE   F L  +L+ + +LF   ++ KG++L   I+ +VP  LIGDP R  Q+
Sbjct: 812  KIEAGRVMLEQTQFRLEDLLEQLTALFQAAAEAKGLDLFYRIAPQVPRQLIGDPMRLGQV 871

Query: 380  ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
            + NL+GN++KFTE+G + + + +V E  + IE                            
Sbjct: 872  LNNLVGNAVKFTEQGQVELAIRVVSERDERIE---------------------------- 903

Query: 440  TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
                                L  SV D+G G+  +   R+F  F Q   SI+R +GGTG+
Sbjct: 904  --------------------LSFSVRDSGIGMAADTIERLFQAFTQADGSITRRYGGTGL 943

Query: 500  GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 559
            GL+IS+ LV  M G I   S P  GSTF F A F        E  + ++   P+++    
Sbjct: 944  GLTISQRLVRLMGGTIKARSAPEQGSTFCFHAEF-----KLPERAAARIGAPPHAIGQS- 997

Query: 560  QGMKALVVDPRPIRAKVSRYHIQRLG---IQVEVVSDQLQCLSQIASGSKIINMILVEQE 616
               + L+VD RP   ++    +Q      ++        Q ++Q A+  + ++++L+E +
Sbjct: 998  ---RILIVDKRPAARQLLAEILQSWRMTLLEASSCPGARQAIAQAAAAGQPVDLVLLEAK 1054

Query: 617  ------VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMK 670
                          +       R LG    + + L+ +SI  ++     D   +P ++ K
Sbjct: 1055 QCLDCRFCPVAAPPAPAEGLPPRALG-DPPTPVVLMVSSIEQAQLLARGDSSELPRLLAK 1113

Query: 671  PLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLK 730
            P+  S L  ++               E    SL   L G ++L+ +DN +N  V    L 
Sbjct: 1114 PVTPSALFDAIANVTQAQRPVRAYAAEANPGSLSP-LQGVRVLVAEDNRINQMVVEGILC 1172

Query: 731  RYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790
            + GA+V     G++A +L +    FD   MD+QMP MDG+ AT+ IR             
Sbjct: 1173 QIGASVTLATNGREAADLAL-QQDFDVVLMDLQMPLMDGYAATEAIR------------- 1218

Query: 791  EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                       N  VPI+A+TA  ++   E CL +GM+ ++SKP     L   ++R+
Sbjct: 1219 ---------AHNPDVPIIALTAAALETDRERCLAAGMNDHLSKPVIPAHLIEVMTRW 1266


>gi|153839829|ref|ZP_01992496.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AQ3810]
 gi|149746646|gb|EDM57634.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AQ3810]
          Length = 932

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 182/607 (29%), Positives = 290/607 (47%), Gaps = 108/607 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY++T + S   L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDYLQTIEKSANNLL 340

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+E+GKL LE + F+ R  L++V++L +  + +KG+E+ + +  ++P  L
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +QI+TNL+GNSIKFTE+G+I V+V +  +  DS+E++                
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQ---------------- 444

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                             V DTG GI    Q+++F  F Q   S
Sbjct: 445 --------------------------------FMVRDTGIGISERQQAQLFQAFSQADAS 472

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT             NS +M 
Sbjct: 473 ISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRL----------NSTEM- 521

Query: 550 NQPNSVSSEFQ---GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
             P S   E +   G + L+V+P    A V++  + + GI V   S     L +      
Sbjct: 522 --PMSDLIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRS----SLPENEEHYD 575

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLG----CGFQSKLFLLANSISSSRANTSTDGV 662
            + + L   + +++ +  +  ++   +++      G  S    LA+ I +          
Sbjct: 576 YVLLNLAANQTYDEQSVAA--WIEQAKRMAPSVIMGTPSTELALADQIMTEHQ------- 626

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
                + KPL    L  SL        +        P  +     L   +L VDDN  NL
Sbjct: 627 --IQCLTKPLSRRKLLQSLINEHVEAPQA----IAAPVETEESERLPLTVLAVDDNPANL 680

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
           K+ +A LK     V     G++A   L    ++D  FMDIQMP MDG  A + I+E+E N
Sbjct: 681 KLISALLKERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGVTACQNIKELELN 739

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
            +                     P++A+TA  +    +  L +GMD Y++KP E   L +
Sbjct: 740 KD--------------------TPVIAVTAHAMAGERDRLLAAGMDDYLTKPIEEHVLQQ 779

Query: 843 EVSRFFP 849
            +  + P
Sbjct: 780 VLVHWNP 786


>gi|156975786|ref|YP_001446693.1| hybrid sensory histidine kinase BarA [Vibrio harveyi ATCC BAA-1116]
 gi|156527380|gb|ABU72466.1| hypothetical protein VIBHAR_03530 [Vibrio harveyi ATCC BAA-1116]
          Length = 932

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 198/679 (29%), Positives = 321/679 (47%), Gaps = 117/679 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  R  L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + +  ++P+ L+GDP R +QI+TNL+GNSIKFTE+G+I ++V +  +  DS+E++    
Sbjct: 389 TLKVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDISVEIRSQSGDSVELQ---- 444

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                                         V DTG GI    Q+
Sbjct: 445 --------------------------------------------FMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTVRL---- 516

Query: 538 STSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 594
                H+++     P S   E +   G + L+V+P    A V++  + + GI V   S  
Sbjct: 517 -----HSTE----MPMSDLIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRS-- 565

Query: 595 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG----CGFQSKLFLLANSI 650
              L +       + + L   + ++ D SV+  ++   +++      G  S    LA+ +
Sbjct: 566 --SLPENDENYDYVLLNLAANQTYD-DQSVAA-WIEQAKRMAPSVIMGTPSTELALADQV 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
            +               + KPL    L  SL        +  I   E P ++ R   L  
Sbjct: 622 MNDHQ---------IQCLTKPLSRRKLLQSLITDHVETPQAVIAPIE-PVVNER---LPL 668

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            +L VDDN  NLK+ +A L+     V     G++A   L    ++D  FMDIQMP MDG 
Sbjct: 669 TVLAVDDNPANLKLISALLRERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGV 727

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A + I+E+E N +                     P++A+TA  +    +  L +GMD Y
Sbjct: 728 TACQHIKELELNKDT--------------------PVIAVTAHAMAGERDRLLAAGMDDY 767

Query: 831 VSKPFEAEQLYREVSRFFP 849
           ++KP E   L + +  + P
Sbjct: 768 LTKPIEEHVLQQVLVHWNP 786


>gi|346991423|ref|ZP_08859495.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TW15]
          Length = 2291

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 187/583 (32%), Positives = 273/583 (46%), Gaps = 93/583 (15%)

Query: 260  KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
            KS FLAT+SHEIRTPMN V+GM  +LMDTELD  Q DY  T + SG AL+ +INE+LD +
Sbjct: 1778 KSAFLATMSHEIRTPMNAVIGMSGLLMDTELDAEQSDYANTIRDSGDALLGIINEILDFS 1837

Query: 320  KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
            K+E+G++++E   F+LR  ++  L L SGK+ +K ++LA    D +P  +  D  R RQI
Sbjct: 1838 KIEAGQMDIENHPFDLRECIESALDLVSGKAAEKQLDLAYEFDDALPLAISADLTRLRQI 1897

Query: 380  ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
            + NL+ N++KFTE G          EVV S+E   ++  S                    
Sbjct: 1898 LLNLLSNAVKFTESG----------EVVLSVEQSAKVKGS-------------------- 1927

Query: 440  TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
                              + L   V DTG G+  +  SR+F  F Q   S +R +GGTG+
Sbjct: 1928 ------------------LELTFKVRDTGIGLSQKGMSRLFQSFSQADSSTTRKYGGTGL 1969

Query: 500  GLSISKYLVGRMKGEIGFVSI-PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 558
            GL+ISK L   M G +   S     GSTF F  +    +      +   +  QP     E
Sbjct: 1970 GLAISKRLAELMGGTMWAESDGEGSGSTFVFK-IQAKPAKPVKSSSRSLVGVQP-----E 2023

Query: 559  FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW 618
             +G + L+VD      K+     ++ G Q        + LS +  G +    IL      
Sbjct: 2024 LEGKRILMVDDNATNRKILSLQTEKWGTQTTTYGSPSEALSILEEGVEFDLAIL------ 2077

Query: 619  EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLA 678
              D  +  +    L K     +  L L+  S    R     DG+   + + KPLR S L 
Sbjct: 2078 --DMHMPDMNGEELAKRVRAKKPGLPLILFSSLGPRDIDLEDGL-FTANLAKPLRQSHLF 2134

Query: 679  ASL------QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRY 732
             +L      ++     +K   +    P M+ RH L   +IL+ +DN VN K+A   L++ 
Sbjct: 2135 DTLVTLFATEKVRVEPSKPQGKPQTDPDMATRHPL---RILLAEDNLVNQKLALRLLEQM 2191

Query: 733  GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 792
            G        G +A E +     +D  FMD+QMPEMDG EA++ I +  H   +R R    
Sbjct: 2192 GYRADLASNGVEAVESVN-RQTYDVVFMDVQMPEMDGLEASRRINKA-HPDGSRPR---- 2245

Query: 793  SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
                          I+AMTA+ +Q   E CL++GMD Y++KP 
Sbjct: 2246 --------------IVAMTANAMQGDREMCLKAGMDDYITKPI 2274


>gi|433658642|ref|YP_007276021.1| BarA sensory histidine kinase [Vibrio parahaemolyticus BB22OP]
 gi|432509330|gb|AGB10847.1| BarA sensory histidine kinase [Vibrio parahaemolyticus BB22OP]
          Length = 932

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 182/607 (29%), Positives = 290/607 (47%), Gaps = 108/607 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY++T + S   L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDYLQTIEKSANNLL 340

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+E+GKL LE + F+ R  L++V++L +  + +KG+E+ + +  ++P  L
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +QI+TNL+GNSIKFTE+G+I V+V +  +  DS+E++                
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQ---------------- 444

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                             V DTG GI    Q+++F  F Q   S
Sbjct: 445 --------------------------------FMVRDTGIGISERQQAQLFQAFSQADAS 472

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT             NS +M 
Sbjct: 473 ISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRL----------NSTEM- 521

Query: 550 NQPNSVSSEFQ---GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
             P S   E +   G + L+V+P    A V++  + + GI V   S     L +      
Sbjct: 522 --PMSDLIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRS----SLPENEEHYD 575

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLG----CGFQSKLFLLANSISSSRANTSTDGV 662
            + + L   + +++ +  +  ++   +++      G  S    LA+ I +          
Sbjct: 576 YVLLNLAANQTYDEQSVAA--WIEQAKRMAPSVIMGTPSTELALADQIMTEHQ------- 626

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
                + KPL    L  SL        +        P  +     L   +L VDDN  NL
Sbjct: 627 --IQCLTKPLSRRKLLQSLINEHVEAPQA----IAAPVETEESERLPLTVLAVDDNPANL 680

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
           K+ +A LK     V     G++A   L    ++D  FMDIQMP MDG  A + I+E+E N
Sbjct: 681 KLISALLKERIETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGVTACQNIKELELN 739

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
            +                     P++A+TA  +    +  L +GMD Y++KP E   L +
Sbjct: 740 KD--------------------TPVIAVTAHAMAGERDRLLAAGMDDYLTKPIEEHVLQQ 779

Query: 843 EVSRFFP 849
            +  + P
Sbjct: 780 VLVHWNP 786


>gi|213648276|ref|ZP_03378329.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 855

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 176/605 (29%), Positives = 287/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VPE +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +     ++   G +   ++P    A+ +   +    ++V + S     L      
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYIEPNATAAQCTLDLLSDTPVEV-IYSPTFSALPLAHYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             I+++ +  +E          L + + R       +   LLA    +            
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +       +   +++        ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 738

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E E+L+  +
Sbjct: 739 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLL 781

Query: 845 SRFFP 849
            R+ P
Sbjct: 782 LRYKP 786


>gi|262166495|ref|ZP_06034232.1| BarA sensory histidine kinase [Vibrio mimicus VM223]
 gi|262026211|gb|EEY44879.1| BarA sensory histidine kinase [Vibrio mimicus VM223]
          Length = 927

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 318/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L ++   I  + ++    H      I QAT +    +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQTDY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +++  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 521 LPMNDGYDASLLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           + Q    +    + SK  N  LVE  V         + V        G  S    LA+ +
Sbjct: 570 EEQVYDYVLLNLAPSKETNPTLVELWVQRALAMAHNVIV--------GVPSTELALADQL 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 622 MQRYP---------VKCIGKPLSRKKLLQTL-----AAQQPQLSNPSLPKPQADKLPLC- 666

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E     H FD   MDIQMP MDG 
Sbjct: 667 -VMAVDDNPANLKLITALLQERVECVVACTSGQEAIEQAQIRH-FDIILMDIQMPHMDGV 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I++++  +N+                    P++A+TA  +    +  L++GMD Y
Sbjct: 725 TACKEIKQLK-GYND-------------------TPVIAVTAHAMAGERDRLLKAGMDDY 764

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 765 LTKPIE-EHILQQVLVHWSP 783


>gi|322418861|ref|YP_004198084.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320125248|gb|ADW12808.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 823

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 187/632 (29%), Positives = 297/632 (46%), Gaps = 102/632 (16%)

Query: 219 LVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGV 278
           L +A   G +  + VNR  ++E+    + +  + A++A+ AKS FLA +SHEIRTPM GV
Sbjct: 147 LEVAERTGEL--SAVNR--QLEQSLESVRQAMQSAQSANRAKSDFLAQMSHEIRTPMYGV 202

Query: 279 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 338
           LGM ++L+ T+L   Q  YV T + SG+AL+S+IN +LD +K+E+G++ELE + F+LR +
Sbjct: 203 LGMTELLLGTDLTKEQSRYVETVRRSGEALLSIINNILDFSKIEAGRMELETIPFDLRQL 262

Query: 339 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 398
             D  ++F+  +  KG+EL++ +   +P   +GDPGR RQ++ NL+GN++KFT KG + +
Sbjct: 263 ASDAAAIFAEDAARKGLELSLELERGLPRMFLGDPGRLRQVMVNLLGNAVKFTLKGGVRL 322

Query: 399 TVYLVEE-VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 457
           T+ L EE  +  I VE          +G  +A         + FNQ              
Sbjct: 323 TLKLAEEPALVRISVED---------TGIGIAPEAR----LRIFNQ-------------- 355

Query: 458 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 517
                                    F Q   S++R +GGTG+GL+I++ L   M G +  
Sbjct: 356 -------------------------FAQGDESMTRKYGGTGLGLAIARQLTELMGGVLDV 390

Query: 518 VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNS--VSSEFQGMKALVV-DPRPIRA 574
            S P  GS F+FT               Q     P S       +G + L+  D    R 
Sbjct: 391 ESEPGRGSCFSFTVRL------------QLHEEAPRSERCCVALRGKRVLLATDDEETRE 438

Query: 575 KVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK 634
            VS   +   G+ +E   D    L ++ +     ++ L++  +   D          +R 
Sbjct: 439 GVSE-QLFSWGVDLECAGDAPAALCRLVTAP--FDLALLDHRIAGTD---GIELAAAIRT 492

Query: 635 LGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 694
           +  G   +L LL  S   +  N+ +  + +     + LR   L  +L  A+G+ +     
Sbjct: 493 VPAGRSVRLLLLTESAEEA-GNSRSAELEVSRYPRRLLRQEGLYRALITALGMDDAERRE 551

Query: 695 NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
                    R     R++L+V+DN VN +V    L+  G  V  VE G  A   +   ++
Sbjct: 552 AGCCADRPPRP----RQVLLVEDNPVNQEVGKGMLESLGCRVKVVEDGLAAVNEVR-QNR 606

Query: 755 FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
           +D  FMD QMP MDG EAT+ IR  E    NR                  VP++A+TA  
Sbjct: 607 YDLVFMDCQMPVMDGLEATRRIRAREEGTGNR------------------VPVIALTAYA 648

Query: 815 IQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
           ++     CL +G D Y+SKPF  +Q+ + + R
Sbjct: 649 MKGDRLACLEAGADEYLSKPFTRDQIAKIMQR 680


>gi|388602703|ref|ZP_10161099.1| hybrid sensory histidine kinase BarA [Vibrio campbellii DS40M4]
          Length = 932

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 198/679 (29%), Positives = 321/679 (47%), Gaps = 117/679 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  R  L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + +  ++P+ L+GDP R +QI+TNL+GNSIKFTE+G+I ++V +  +  DS+E++    
Sbjct: 389 NLKVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQ---- 444

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                                         V DTG GI    Q+
Sbjct: 445 --------------------------------------------FMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTVRL---- 516

Query: 538 STSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 594
                H+++     P S   E +   G + L+V+P    A V++  + + GI V   S  
Sbjct: 517 -----HSTE----MPMSDLIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRS-- 565

Query: 595 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG----CGFQSKLFLLANSI 650
              L +       + + L   + ++ D SV+  ++   +++      G  S    LA+ +
Sbjct: 566 --SLPENDENYDYVLLNLAANQTYD-DQSVAA-WIEQAKRMAPSVIMGTPSTELALADQV 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
            +               + KPL    L  SL        +  I   E P ++ R   L  
Sbjct: 622 MNDHQ---------IQCLTKPLSRRKLLQSLITDHVETPQAVIAPIE-PVVNER---LPL 668

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            +L VDDN  NLK+ +A L+     V     G++A   L    ++D  FMDIQMP MDG 
Sbjct: 669 TVLAVDDNPANLKLISALLRERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGV 727

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A + I+E+E N +                     P++A+TA  +    +  L +GMD Y
Sbjct: 728 TACQQIKELELNKDT--------------------PVIAVTAHAMAGERDRLLAAGMDDY 767

Query: 831 VSKPFEAEQLYREVSRFFP 849
           ++KP E   L + +  + P
Sbjct: 768 LTKPIEEHVLQQVLVHWNP 786


>gi|424047708|ref|ZP_17785266.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HENC-03]
 gi|408883672|gb|EKM22451.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HENC-03]
          Length = 932

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 196/679 (28%), Positives = 320/679 (47%), Gaps = 117/679 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  R  L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + +  ++P+ L+GDP R +QI+TNL+GNSIKFTE+G+I ++V +  +  DS+E++    
Sbjct: 389 TLKVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQ---- 444

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                                         V DTG GI    Q+
Sbjct: 445 --------------------------------------------FMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTVRL---- 516

Query: 538 STSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 594
                H+++     P S   E +   G + L+V+P    A V++  + + GI V   S  
Sbjct: 517 -----HSTE----MPMSDLIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRS-- 565

Query: 595 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG----CGFQSKLFLLANSI 650
              L +       + + L   + +++ +  +  ++   +++      G  S    LA+ +
Sbjct: 566 --SLPENDENYDYVLLNLAANQTYDEQSVAA--WIEQAKRMAPSVIMGTPSTELALADQV 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
            +               + KPL    L  SL        +  I   E P ++ R   L  
Sbjct: 622 MNDHQ---------IQCLTKPLSRRKLLQSLITDHVETPQAVIAPIE-PVVNER---LPL 668

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            +L VDDN  NLK+ +A LK     V     G++A   L    ++D  FMDIQMP MDG 
Sbjct: 669 TVLAVDDNPANLKLISALLKERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGV 727

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A + I+E+E N +                     P++A+TA  +    +  L +GMD Y
Sbjct: 728 TACQHIKELELNKDT--------------------PVIAVTAHAMAGERDRLLAAGMDDY 767

Query: 831 VSKPFEAEQLYREVSRFFP 849
           ++KP E   L + +  + P
Sbjct: 768 LTKPIEEHVLQQVLVHWNP 786


>gi|417228679|ref|ZP_12030437.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           5.0959]
 gi|386208014|gb|EII12519.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           5.0959]
          Length = 918

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESQLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|392423698|ref|YP_006464692.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
           SJ4]
 gi|391353661|gb|AFM39360.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
           SJ4]
          Length = 914

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 169/596 (28%), Positives = 285/596 (47%), Gaps = 87/596 (14%)

Query: 257 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVL 316
           +VAKSQFLA +SHEIRTPMNG++G +++L    L+  Q  Y+   +AS  AL+ LIN++L
Sbjct: 397 NVAKSQFLANMSHEIRTPMNGIIGYIELLSTMPLEKEQASYIAEVKASTDALLVLINDIL 456

Query: 317 DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 376
           D +K+E+GK+ ++   F+L  +++D +SLFS K+  KG+E+  +I++ VP  + GDPGR 
Sbjct: 457 DYSKIEAGKMFIDNAPFDLYKLIEDSVSLFSPKAHSKGIEILSFIAEGVPSQVQGDPGRL 516

Query: 377 RQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 436
           RQ++ N++GN++KFT+KG + + +  ++E+ D + ++ ++  +                 
Sbjct: 517 RQVLNNIIGNAVKFTDKGEVTLKITALKEIEDKVLLQIDIKDT----------------- 559

Query: 437 GFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 496
                                          G GI  E    +F  F Q   S +R + G
Sbjct: 560 -------------------------------GIGISEEDMKCLFQVFTQADASTTRKYEG 588

Query: 497 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS 556
           TG+GL+IS+ ++  M G I   S    GSTFT T           E    ++  + +  S
Sbjct: 589 TGLGLAISRRILELMGGSITVNSELGRGSTFTLTL----------EMEKSEIKVEDDLQS 638

Query: 557 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS-GSKIINMILVEQ 615
           +  +G+  L+VD       + R +++    +V  V++  + L  +   G + +  I++  
Sbjct: 639 TSLEGLNLLIVDDNESNRMIFREYLKETNCKVMSVNNGREGLEILKGLGDENLPQIILVD 698

Query: 616 EVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS 675
            +  + T +   F   ++++      KL LL+++         T G S    I KP+R  
Sbjct: 699 YMMPEMTGIE--FGKKVKEIERFKHIKLILLSSAARLDARLIKTIGFS--GYICKPVRKK 754

Query: 676 MLAASLQRAMGVGNKGNIRNWELPSMSLRH---LLLGRKILIVDDNNVNLKVAAAGLKRY 732
            L  ++               ++P ++       +    IL+V+D  VN ++    LKR 
Sbjct: 755 ELLKAIS-GFAASEAAAPEEPQIPLLTTAENYKQMADLSILLVEDKEVNQRIELIMLKRL 813

Query: 733 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 792
           G +      GK+A EL     ++D  FMD QMP MDG+EAT  IR+M             
Sbjct: 814 GYSANIAVNGKQAVELC-DTRKYDIIFMDCQMPVMDGYEATDRIRKMSS----------- 861

Query: 793 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
                    N H PI+AMTA  ++   E C+ +GMD Y+SKP     L   + ++ 
Sbjct: 862 --------LNKHSPIIAMTAHAMEGDRERCVAAGMDDYISKPVTLAALEEMLGKYL 909


>gi|335034321|ref|ZP_08527672.1| two component sensor kinase/response regulator hybrid [Agrobacterium
            sp. ATCC 31749]
 gi|333794286|gb|EGL65632.1| two component sensor kinase/response regulator hybrid [Agrobacterium
            sp. ATCC 31749]
          Length = 1222

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 190/656 (28%), Positives = 306/656 (46%), Gaps = 117/656 (17%)

Query: 226  GHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 285
            G+ +   V  + +++     +  L  +AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L
Sbjct: 639  GNYWLIIVTDVTEMKVREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELL 698

Query: 286  MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 345
              ++LD  Q+ +      SG AL+++IN++LD +K+E+G+++L +V F+    ++DV+SL
Sbjct: 699  AKSKLDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSL 758

Query: 346  FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 405
             S  + +K +EL V I   V   +IGD GRFRQI+TN++GN++KFTE GH+ V       
Sbjct: 759  LSSAALEKDIELIVRIDASVSGKVIGDAGRFRQIVTNIVGNAVKFTETGHVLV------- 811

Query: 406  VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 465
                     ELS+                       + + S S F           + VE
Sbjct: 812  ---------ELSAQ----------------------SAEASESIFS----------LRVE 830

Query: 466  DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 525
            D+G GIP++    IF  F QV  S +R H GTG+GL+I+  LVG   G+I  VS    GS
Sbjct: 831  DSGIGIPVDKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGKINVVSEVGRGS 890

Query: 526  TFTFTAVFGNGSSTSNEHNSQQMNNQPNS--VSSEFQGMKALVVDPRPIRAKVSRYHIQR 583
             F     F            Q M  + +   +S     ++ LV+D   +  ++    ++ 
Sbjct: 891  AFEVDIPF------------QVMERRRDVPLLSVAIDDIRVLVIDDNDVNRRILTEQLRS 938

Query: 584  LGIQVEVVSD---QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640
             GI    V +    +  L + AS    I+ I+++  +      ++ L V    +    F 
Sbjct: 939  WGIDGHAVENGPSGIAVLQEAASLGFAIDAIILDYHM----PVMNGLDVVERIRADKRFD 994

Query: 641  SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL-------------QRAMGV 687
                +   S+      T    +S+ + +MKP R+ +L ++L             Q  +  
Sbjct: 995  DIAIVFLTSMDVVGDETLFTDLSVQAHLMKPARARLLRSTLFDVVRDVRLKRIRQHPLAQ 1054

Query: 688  GNKGNIRNWE---------------LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRY 732
            G  G     E               +P  S   LL    +L+ +DN+VN  V +  L++ 
Sbjct: 1055 GTGGEKARPESRPAEKKQRAEAPATVPERSRPCLL---DVLVAEDNDVNQIVFSQILQQA 1111

Query: 733  GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 792
            G   + V  GK+A +     +      MD+ MP M+G +AT+ IR  E    +       
Sbjct: 1112 GLRFLIVGNGKRAVQ-AWEEYNPALILMDVSMPVMNGHQATQAIRAAEQAAGD------- 1163

Query: 793  SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
                     + HVP++ +TA   +A  E CL +GMD Y+SKP   E L  +++++ 
Sbjct: 1164 ---------SRHVPVIGVTAHTQEADRERCLEAGMDDYLSKPISPESLEDKIAQWL 1210


>gi|254445248|ref|ZP_05058724.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198259556|gb|EDY83864.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 800

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 186/590 (31%), Positives = 291/590 (49%), Gaps = 95/590 (16%)

Query: 252 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
           +AE A+ AKS FLA++SHEIRTPMN V+G+  +L++T++D  Q+DY++T +ASG +L+ L
Sbjct: 280 EAELANQAKSSFLASMSHEIRTPMNAVIGLTGVLLETQIDDDQRDYLQTIRASGDSLLVL 339

Query: 312 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
           IN++LD +K+ES K+ELE    + R  +++ L L + K+  KG+EL    S+ +P  ++G
Sbjct: 340 INDILDFSKIESDKMELEERPIDPRCCVEEALELLAEKASSKGLELCYEASEDIPFGILG 399

Query: 372 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
           D  R RQI+ NL+GN+IKFTEKG I V             ++T  +  +N +  + V   
Sbjct: 400 DATRLRQILVNLIGNAIKFTEKGQIEVL------------LKTRETDQRNCVIEFTV--- 444

Query: 432 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
                                            +D+G GIP + QSR+F  F QV  S +
Sbjct: 445 ---------------------------------KDSGIGIPADKQSRLFKSFSQVDSSTT 471

Query: 492 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 551
           R +GGTG+GL+ISK L   M GE+   S    GS+F FT V      +S    S   + +
Sbjct: 472 RKYGGTGLGLAISKKLTELMGGEMRVESSEGSGSSFIFTIV---SPVSSPVVYSPDFDER 528

Query: 552 PNSVSSEFQGMKALVVDPRPIRAK--VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             S+ S   G   LVV P  +  +   ++ H  +  +Q     DQ   L+Q    +    
Sbjct: 529 GESLVS---GKSLLVVQPNEVIGEKITAQLHRWKAKVQFAATIDQATELAQ----AHKFA 581

Query: 610 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
           + LV+Q    ++T    L      +  C    K+ L+  +     A T  D       + 
Sbjct: 582 IALVDQRYGAEET--KRLLQTARSESAC---PKIRLIEIAPFGKTAPTERDA----QTLS 632

Query: 670 KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----KILIVDDNNVNLKVA 725
           KP++ S L  +L +++   +K + RN    + +  H  LG     +IL+ +DN +N KV 
Sbjct: 633 KPVKPSSLLDALAKSL--QSKNHTRNATKDAKTEDHAKLGENCPLRILMAEDNKINQKVV 690

Query: 726 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785
              LK+   ++     G +  + L   +Q+D   MD+QMP MDG+EAT+ I         
Sbjct: 691 KLVLKQLSYSIDVANDGLEVLDKL-DQNQYDVVLMDVQMPNMDGYEATREI--------- 740

Query: 786 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835
             +R  +    Y         I+A+TA+ +Q   E  + +GM  YVSKP 
Sbjct: 741 -YKRFPIDKRPY---------IIALTANAMQGDRERAIAAGMQDYVSKPI 780


>gi|16761737|ref|NP_457354.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143221|ref|NP_806563.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213163046|ref|ZP_03348756.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|378961034|ref|YP_005218520.1| Signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Typhi str. P-stx-12]
 gi|25308233|pir||AI0860 sensor protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504038|emb|CAD06072.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138854|gb|AAO70423.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|374354906|gb|AEZ46667.1| Signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Typhi str. P-stx-12]
          Length = 918

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 176/605 (29%), Positives = 287/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VPE +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +     ++   G +   ++P    A+ +   +    ++V + S     L      
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYIEPNATAAQCTLDLLSDTPVEV-IYSPTFSALPLAHYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             I+++ +  +E          L + + R       +   LLA    +            
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +       +   +++        ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 738

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E E+L+  +
Sbjct: 739 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLL 781

Query: 845 SRFFP 849
            R+ P
Sbjct: 782 LRYKP 786


>gi|418300342|ref|ZP_12912168.1| two component sensor kinase/response regulator hybrid [Agrobacterium
            tumefaciens CCNWGS0286]
 gi|355533755|gb|EHH03075.1| two component sensor kinase/response regulator hybrid [Agrobacterium
            tumefaciens CCNWGS0286]
          Length = 1224

 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 189/634 (29%), Positives = 297/634 (46%), Gaps = 111/634 (17%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            +  L  +AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L  + LD  Q+ +      SG
Sbjct: 659  LQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDTRQKTFTDIIVKSG 718

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
             AL+++IN++LD +K+E+G+++L +V F+    ++DV+SL S  + +K +EL V I   V
Sbjct: 719  NALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKDIELIVRIDASV 778

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
               +IGD GRFRQI+TN++GN++KFTE GH+ V                ELS+       
Sbjct: 779  FGKVIGDAGRFRQIVTNIVGNAVKFTETGHVLV----------------ELSA------- 815

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                     +S+ A    L + VED+G GIP +    IF  F Q
Sbjct: 816  -------------------------RSAEASEAILSLRVEDSGIGIPADKLETIFDKFSQ 850

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
            V  S +R H GTG+GL+I+  LVG   G I  VS    GS F     F           +
Sbjct: 851  VDGSATRRHEGTGLGLAITVGLVGLFDGAINVVSDVGKGSAFEVNIPF---------QVT 901

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIA 602
            ++  + P  +S     ++ LV+D   +  ++    ++  G+    V D    +  L + A
Sbjct: 902  ERQRDLP-LLSVAIDDIRVLVIDDNDVNRRILTEQLRSWGVDGHAVEDGPSGIAVLQEAA 960

Query: 603  SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
            S    ++ I+++  +      ++ L V    +    F     +   S+      T    +
Sbjct: 961  SLGFSLDAIILDYHM----PVMNGLDVVERIRADARFDDIAIVFLTSMDVVGDETLFTDL 1016

Query: 663  SIPSVIMKPLRSSMLAASL-----------------QRAMGVGNKGNIR--NWEL----- 698
            ++ + +MKP R+ +L ++L                  R  G G +G IR  N  +     
Sbjct: 1017 NVQAHLMKPARARLLRSTLFDVVRDVRLKRARQAPSPRETGRG-EGAIRPENGAVERKQR 1075

Query: 699  ----PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 754
                P++  RH      +L+ +DN+VN  V    L++ G   + V  GKKA +     + 
Sbjct: 1076 ADISPAVPTRHRPSLVDVLVAEDNDVNQIVFTQILQQAGLRFLIVGNGKKAVQAWQENNP 1135

Query: 755  FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814
                 MD+ MP M+G +AT+ IR  E                       HVPI+ +TA  
Sbjct: 1136 A-IILMDVSMPVMNGHQATQAIRAAERM----------------AADGRHVPIIGVTAHT 1178

Query: 815  IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             +A  E CL +GMD Y+SKP   E L  +++++ 
Sbjct: 1179 QEADRELCLEAGMDDYLSKPISPETLEDKIAQWL 1212


>gi|269960400|ref|ZP_06174773.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834827|gb|EEZ88913.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 932

 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 197/679 (29%), Positives = 320/679 (47%), Gaps = 117/679 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  R  L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + +  ++P+ L+GDP R +QI+TNL+GNSIKFTE+G+I ++V +  +  DS+E++    
Sbjct: 389 TLKVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQ---- 444

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                                         V DTG GI    Q+
Sbjct: 445 --------------------------------------------FMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTVRL---- 516

Query: 538 STSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 594
                 +S +M   P S   E +   G + L+V+P    A V++  + + GI V   S  
Sbjct: 517 ------HSTEM---PMSDLIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRS-- 565

Query: 595 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG----CGFQSKLFLLANSI 650
              L +       + + L   + +++ +  +  ++   +++      G  S    LA+ +
Sbjct: 566 --SLPENDENYDYVLLNLAANQTYDEQSVAA--WIEQAKRMAPSVIMGTPSTELALADQV 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
            +               + KPL    L  SL        +  I   E P ++ R   L  
Sbjct: 622 MNDHQ---------IQCLTKPLSRRKLLQSLITDHVETPQAVIAPIE-PVVNER---LPL 668

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            +L VDDN  NLK+ +A LK     V     G++A   L    ++D  FMDIQMP MDG 
Sbjct: 669 TVLAVDDNPANLKLISALLKERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGV 727

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A + I+E+E N +                     P++A+TA  +    +  L +GMD Y
Sbjct: 728 TACQHIKELELNKDT--------------------PVIAVTAHAMAGERDRLLAAGMDDY 767

Query: 831 VSKPFEAEQLYREVSRFFP 849
           ++KP E   L + +  + P
Sbjct: 768 LTKPIEEHVLQQVLVHWNP 786


>gi|23428538|gb|AAL11449.1| putative global response regulation sensor kinase GrrS [Serratia
           plymuthica]
          Length = 908

 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 182/620 (29%), Positives = 289/620 (46%), Gaps = 125/620 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA++SHE+RTP+NGV+G    ++ TE+ VTQ DY++T + S   L+
Sbjct: 282 KKRAQEAARIKSEFLASMSHELRTPLNGVIGFTRQMLKTEMSVTQTDYLQTIERSANNLL 341

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F+LR  LD+V+ L +  + +KG+EL + + + VPE +
Sbjct: 342 TIINDVLDFSKLEAGKLVLEHIPFSLRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQV 401

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGD  R +QIITNL+GN+IKFTE G+I + V L  +    +E+E                
Sbjct: 402 IGDSLRLQQIITNLLGNAIKFTETGNIDIRVELRGQQDHQVELE---------------- 445

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                           V + DTG GI    QS++F  F Q   S
Sbjct: 446 --------------------------------VQIHDTGIGISERQQSQLFQAFRQADAS 473

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST--FTFTAVFGNG-----SSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S  N GST  F  T     G     SS  + 
Sbjct: 474 ISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWFHITLELHEGMLSLPSSLPDL 533

Query: 543 HNSQQMNNQPNSVSSE----FQGMKALVVDPRPIRAKVSR--YHIQRLGIQVEVVSDQLQ 596
                   + N +++E       + +LV+   P  A++ +  Y    +G+ +    +  Q
Sbjct: 534 RGKTLGYIEANPMAAEATLNMLSVTSLVITHSPTLAQLPKKNYDFLLVGVPIPFRDNLAQ 593

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
             S++ +   I   +++        + ++   +     +GC        L   I+S+R  
Sbjct: 594 HESKLKAALNIAGRVIL---ALPCQSQINAEQLKQQGAIGC--------LIKPITSNRL- 641

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
                   P + M+P +  + A   +R                        L   ++ VD
Sbjct: 642 -------FPLLRMEPPQRLLAAPERKR------------------------LPLTVMAVD 670

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
           DN  NLK+    L       +  E G++A  L    +  D   MDIQMP +DG    ++I
Sbjct: 671 DNPANLKLIGTLLAEQVEKTLLCESGEEALAL-ARDNVLDLILMDIQMPNIDGIRTGELI 729

Query: 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
           R++ H+ +                     PI+A+TA  +    E  L++GMD Y++KP +
Sbjct: 730 RQLPHHNST--------------------PIVAVTAHAVSGEREHLLQAGMDDYLAKPID 769

Query: 837 AEQLYREVSRFFPPIPDRSP 856
              L R ++R++   P   P
Sbjct: 770 EAMLTRVLARYYSGEPAAEP 789


>gi|397166912|ref|ZP_10490355.1| signal transduction histidine-protein kinase BarA [Enterobacter
           radicincitans DSM 16656]
 gi|396091058|gb|EJI88625.1| signal transduction histidine-protein kinase BarA [Enterobacter
           radicincitans DSM 16656]
          Length = 921

 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 183/608 (30%), Positives = 291/608 (47%), Gaps = 112/608 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + +EL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLLTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V+ L +  + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVILLAHSAHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I V V       + +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLIGNAIKFTEHGNIDVVVEKRAISNNKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H    +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVNEMGGDISFHSQPNRGSTFWF-------------HIDLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN++     +    G +   V+P    A+ +   +    +++ + S     L Q   G
Sbjct: 522 --PNAITEAPTTERLAGKRLAYVEPNAAAAQSTLEVLNNTPLEI-IYSPSFSALPQ---G 575

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
              I ++ V   V E      ++  + L +        L  L      +      DG + 
Sbjct: 576 HYDILLLAVPVTVREP----LSMQHDRLARAAAMTDYLLLALPCHAQVNAEELKQDGAA- 630

Query: 665 PSVIMKPLRSSMLAASLQ---RAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 721
            + ++KPL ++ L  +L    R   +    +    +LP MS         ++ VDDN  N
Sbjct: 631 -ACLLKPLTTTRLLPALTEYCRTTQLVLASHADESKLP-MS---------VMAVDDNPAN 679

Query: 722 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEH 781
           LK+    L+     V   E G +A E      QFD   MDIQMP+MDG  A ++IR++ H
Sbjct: 680 LKLIGVLLEDQVQHVELCENGLQAIE-RAKQMQFDLILMDIQMPDMDGIRACELIRQLPH 738

Query: 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY 841
                                   P++A+TA  +    E+ L +GM+ Y++KP E ++L+
Sbjct: 739 --------------------QQQTPVVAVTAHAMAGQKEKLLSAGMNDYLAKPIEEDKLH 778

Query: 842 REVSRFFP 849
             + R+ P
Sbjct: 779 NLLLRYKP 786


>gi|420337927|ref|ZP_14839489.1| signal transduction histidine-protein kinase BarA [Shigella
           flexneri K-315]
 gi|391259801|gb|EIQ18875.1| signal transduction histidine-protein kinase BarA [Shigella
           flexneri K-315]
          Length = 918

 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 184/613 (30%), Positives = 287/613 (46%), Gaps = 122/613 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSE----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 598
              +    +PNS +++          L V   P  + +   H  R+ + + V   +    
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDRMLLGIAVTFRE---- 590

Query: 599 SQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 658
                       + ++ E   K  S++      +  L C  Q            +     
Sbjct: 591 -----------PLTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEKLK 625

Query: 659 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718
            DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VDDN
Sbjct: 626 QDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVDDN 676

Query: 719 NVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATKII 776
             NLK+ +A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A ++I
Sbjct: 677 PANLKLISALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACELI 733

Query: 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
            ++ H                        P++A+TA  +    E+ L +GM  Y++KP E
Sbjct: 734 HQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIE 773

Query: 837 AEQLYREVSRFFP 849
            E+L+  + R+ P
Sbjct: 774 EERLHNLLLRYKP 786


>gi|389879552|ref|YP_006381782.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
 gi|388530942|gb|AFK56137.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
          Length = 1397

 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 197/627 (31%), Positives = 294/627 (46%), Gaps = 106/627 (16%)

Query: 233  VNRIAKVEEDYHGMMELKKKAE---AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE 289
            V  IA + E    M EL++  E   AA+ AKS FLA +SHEIRTPMNGV GML +L+ T 
Sbjct: 729  VAAIADMTERDRSMAELRRAREEADAANAAKSAFLANMSHEIRTPMNGVTGMLQILLATP 788

Query: 290  LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGK 349
            LD  Q+ Y   A+ S  +L+ LI+++LD +K+E+G++ELE + F+L  ++D V+++ + +
Sbjct: 789  LDADQRRYAEVARDSADSLLGLIDDILDVSKLEAGRMELERLPFDLEELVDGVIAILAPR 848

Query: 350  SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 409
            ++D+ ++LA  +      + IGDP R RQI+ NL GN++KFT  GH+            S
Sbjct: 849  ARDRRIDLAGVVDSSAVGSWIGDPTRIRQILVNLAGNAVKFTTAGHV------------S 896

Query: 410  IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469
            IEV                                       ++  D   L   VEDTG 
Sbjct: 897  IEVSA------------------------------------IAADDDRGRLRFRVEDTGV 920

Query: 470  GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 529
            GI  +   ++F PF Q   S++R  GGTG+GL+I + L   M G I  VS    GS FT 
Sbjct: 921  GIAADHLDQLFRPFSQADASVTRRFGGTGLGLAICRDLTALMGGTIDVVSREGEGSVFTV 980

Query: 530  TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ-V 588
                        E  +      P+       G +ALVVD   +  ++    I+ LG+  V
Sbjct: 981  --------EIGLERVADAARTTPS--MPVLAGRRALVVDAVEVTRRMVARQIEALGMDCV 1030

Query: 589  EVVS--DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 646
            EV S  + L  L    +G + I+++            +S L   NL  L     ++   L
Sbjct: 1031 EVASAGEALIILEMSVAGERPIDLV------------ISGL---NLTGLSAARLARWVRL 1075

Query: 647  ANSISSSRANTSTDGVSIP------SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 700
               ++  +   +T GV +P       VI KP+R   LA  + R +             P+
Sbjct: 1076 DPDLAGVKVIAATCGVPVPDEELYDGVISKPVRRRELADLMHRLLDPEAAAARGVSPAPA 1135

Query: 701  MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
                H   GR++L+V+DN  N  VA   L+R G  V   E G +  EL +    FDA  M
Sbjct: 1136 EGPGH---GRRLLLVEDNATNRTVATVMLERQGYTVETAETG-EGVELRLAEGSFDAVLM 1191

Query: 761  DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
            DIQMP +DG EAT+                     A        VPI+A+TA+ +    E
Sbjct: 1192 DIQMPVVDGIEATR-----------------RIRAAEAAACLPPVPIVALTANAMAGMRE 1234

Query: 821  ECLRSGMDGYVSKPFEAEQLYREVSRF 847
            E L +GM+ Y++KPF+ + L   V+++
Sbjct: 1235 EYLAAGMNDYLAKPFQVDDLLAVVAKW 1261


>gi|300931244|ref|ZP_07146584.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
 gi|300460898|gb|EFK24391.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
          Length = 918

 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 286/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP+     L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPATDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPPNLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|427800133|ref|ZP_18967937.1| hybrid sensory histidine kinase BarA, partial [Salmonella enterica
           subsp. enterica serovar Typhimurium str. STm5]
 gi|414063705|gb|EKT44802.1| hybrid sensory histidine kinase BarA, partial [Salmonella enterica
           subsp. enterica serovar Typhimurium str. STm5]
          Length = 810

 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 177/605 (29%), Positives = 287/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +     ++   G +   V+P    A+ +   +    ++V V S     L      
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             I+++ +  +E          L + + R       +   LLA    +            
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +       +   +++        ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 738

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E E+L+  +
Sbjct: 739 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLL 781

Query: 845 SRFFP 849
            R+ P
Sbjct: 782 LRYKP 786


>gi|392308226|ref|ZP_10270760.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas citrea NCIMB
            1889]
          Length = 1319

 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 170/587 (28%), Positives = 283/587 (48%), Gaps = 85/587 (14%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K  A+ +   K +FLA +SHEIRTPMN ++GM  + + T+L+  Q +YV     + K L+
Sbjct: 581  KDLADRSARVKGEFLANMSHEIRTPMNAIIGMAHLALSTDLNPKQHNYVSKIDVAAKQLL 640

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
             LIN++LD +K+++GK+ELE   F L  +LD+V+++ S K+Q+K +EL   + + +P  L
Sbjct: 641  HLINDILDFSKIDAGKIELEHTKFELDQLLDNVMTVISVKAQEKQLELIFDVPNTIPNNL 700

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            IGDP R  QI+ NL GN++KFTEKGH+ + +  +E+  ++ ++                 
Sbjct: 701  IGDPLRLGQILINLAGNAVKFTEKGHVSIQIRELEQAEETTKI----------------- 743

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                      TF                     SV DTG G+  + Q ++F  F Q   S
Sbjct: 744  ----------TF---------------------SVIDTGIGMNPQQQQKLFKSFSQADTS 772

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            I+R +GGTG+GL+IS+ LV  M GEI   S    GSTF FT              S+  +
Sbjct: 773  ITRKYGGTGLGLTISQQLVKLMGGEIYIESTLGGGSTFYFTLEL-----------SRDQH 821

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
             Q  ++ +       L+VD      +V    +  +   V      ++ +  I +  K  +
Sbjct: 822  TQKVALPTLSTTKNILIVDDNAQAIEVLHDMLVNMNATVSCADSAIKAIDIITTAPKPFD 881

Query: 610  MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 669
             ++++ ++ E D  ++ + + N R L         LL  +             S+  V++
Sbjct: 882  ALIIDWQMPEMD-GLTAIEILNTRSL---LTHTKVLLTTAYGRELELKPHQKSSVAGVVL 937

Query: 670  KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 729
            KP+ +S L  +L   +G   + +    E  +  +   L G  IL+ +D  VN ++A   L
Sbjct: 938  KPINASHLFDTLISCLGPYTQPH-TTVEPVNEQVSTSLGGISILLAEDQPVNQEIAVEIL 996

Query: 730  KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789
              YGA +     G +A + +   +++D   MD+QMP M G +AT+ IR+  +N +     
Sbjct: 997  SNYGAKIDVANDGVEALKKI-AENKYDVVLMDMQMPNMGGIQATQAIRKQPNNGD----- 1050

Query: 790  GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
                           +PI+AMTA+ +Q     CL SGM+ ++SKP +
Sbjct: 1051 ---------------LPIIAMTANAMQDDITLCLDSGMNDHISKPID 1082


>gi|428305491|ref|YP_007142316.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
 gi|428247026|gb|AFZ12806.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
          Length = 1154

 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 197/644 (30%), Positives = 303/644 (47%), Gaps = 112/644 (17%)

Query: 260  KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
            KSQFLA +SHEIRTPMN ++GM  +L++TEL   Q+D+V T Q S  AL+++IN++LD +
Sbjct: 434  KSQFLANMSHEIRTPMNAIIGMTGLLLNTELTPLQRDFVETTQTSSDALLTIINDILDLS 493

Query: 320  KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
            K+ESGKLELE  SFNLR  +++ L L + K+  K +EL   IS +VP  + GD  R RQI
Sbjct: 494  KIESGKLELENYSFNLRTCIEEALDLLTPKAAGKNIELVCLISPQVPIIIWGDSTRLRQI 553

Query: 380  ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
            + NL+ N+IKFTEKG I ++       V++ E E     SK               K   
Sbjct: 554  LVNLLSNAIKFTEKGEILLS-------VNAQEFEKNKKLSK---------------KLDN 591

Query: 440  TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
              N+              I++  +V+D+G GIP +   R+F  F QV  S +R +GGTG+
Sbjct: 592  NLNRQ-------------ISIQFAVKDSGIGIPADRMDRLFKSFSQVDSSTTRHYGGTGL 638

Query: 500  GLSISKYLVGRMKGEIGFVS------IP---------------NIGSTFTFTAVFGNGSS 538
            GL+ISK L   M G++   S      IP               N  + +T + +  N + 
Sbjct: 639  GLAISKQLSEMMGGQMWVESGGVIAGIPPQEWQPVSNNLLEQINKENFYTKSNLNQNVNE 698

Query: 539  TSNEHNSQQMNNQPN----------------------SVSSEFQGMKALVVDPRPIRAKV 576
               +    Q+ N P+                      + +S+ +G + L+VD      ++
Sbjct: 699  IFLDATQLQLANSPSGSTFYFTIIAEAEANTLAVDLVNSNSDLKGKRLLIVDDNTTNRQI 758

Query: 577  SRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 636
                 Q  G+    +    + L  +  G ++ ++ +++ ++ + D          +RKL 
Sbjct: 759  LVLQAQSWGMLSYSLESGAKTLEFLKQG-EVFDLAILDMQMPDMD---GLTLGKEIRKLS 814

Query: 637  CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG---VGNKGNI 693
               +  L +L +   S   N     V   + + KP++ S L   L   +    V  K + 
Sbjct: 815  AYKKLPLVMLTSLNGSESPNYQK--VDFAAFLTKPVKQSHLYNLLIHILSEQPVQVKSS- 871

Query: 694  RNWELPSMSLRHLL--LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 751
                 P ++ +HL   L  +IL+ +DN VN KVA   LKR G        G +A  + + 
Sbjct: 872  -RTAAPKIN-QHLAEELPLRILLTEDNVVNQKVALHILKRMGYEADIANNGLEAL-VALR 928

Query: 752  PHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMT 811
               +D   MD+QMPEMDG  AT+ I + E +   R R                  I+AMT
Sbjct: 929  RQSYDVVLMDMQMPEMDGLTATRQICQ-EWSSEERPR------------------IIAMT 969

Query: 812  ADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIPDRS 855
            A+ +Q   E CL +GMD YVSKP   + L   +S+  P +   S
Sbjct: 970  ANAMQGDRELCLNAGMDDYVSKPIRVDVLIEALSKCQPKVKTNS 1013


>gi|392544981|ref|ZP_10292118.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas rubra ATCC
            29570]
          Length = 1333

 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 193/627 (30%), Positives = 308/627 (49%), Gaps = 103/627 (16%)

Query: 221  IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
            +A +VG +   T  +  + E     + + K KA+    AK +FLA +SHEIRTPMN ++G
Sbjct: 574  LAGVVGLLLDVTERKQMEQE-----LRQAKDKADEMSTAKGEFLANMSHEIRTPMNAIIG 628

Query: 281  MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
            M  + + T+L   Q  Y+     + K+L+ +IN++LD +K+ESGKLE+E + F+L+ +LD
Sbjct: 629  MSHLALRTDLTPQQMGYINKIDQAAKSLLGIINDILDFSKIESGKLEIEHIDFSLQEVLD 688

Query: 341  DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
            +V+++   + Q+KG+E+ + I+  VP +L+GDP R  QI+ NL GN+IKFTE+G I ++V
Sbjct: 689  NVVNINVIRVQEKGLEMLLDIAPDVPISLVGDPLRLGQILINLCGNAIKFTEQGEITISV 748

Query: 401  YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQ-DGSTSPFKSSSADLIN 459
               E++ D + ++    S K+T  G     R    K F+ F+Q DG              
Sbjct: 749  TAAEQIEDQVTLKF---SVKDTGIGMS---REQQNKLFQAFSQADG-------------- 788

Query: 460  LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS 519
                                         SI+R +GGTG+GLSI K LV  M G IG  S
Sbjct: 789  -----------------------------SITRKYGGTGLGLSICKKLVELMGGSIGVHS 819

Query: 520  IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN--QPNSVSSEFQGMKALVVDPRPIRAKVS 577
                GS F FT   G  S+        ++ N   P+   S+  G +ALVVD       + 
Sbjct: 820  EQGKGSEFFFTIKSGLQSA--------KLTNVICPD---SQLAGKQALVVDDNESARAIL 868

Query: 578  RYHIQRLGIQVEVVSDQLQC--LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 635
               ++ +  QV   +       L+Q A G  II M       W+         + ++R L
Sbjct: 869  TNLLKAMKFQVTCSASGSGAVELAQ-AGGYDIIFM------DWKMPHMSGIDAIKHIRAL 921

Query: 636  GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNK--GNI 693
                + K ++L  +  +     S     I SVI+KP+ +S+L  S+  +  +  +  GN 
Sbjct: 922  ELETEPK-YVLVTAYGTDIGMNSEVHELIDSVILKPVNASVLLNSIMESFQLSEQQGGNE 980

Query: 694  RNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH 753
               ++ + +L  L   + +L+V+DN+ N ++A   L      V   E G+ A E++    
Sbjct: 981  SYKKVDNTAL--LFEQQHVLLVEDNSTNQEIAKEMLSSLNLQVSIAENGQVAVEMI-KAQ 1037

Query: 754  QFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD 813
             FD   MDIQMP MDG+ ATK IR++   FN                    +PI+AMTA+
Sbjct: 1038 AFDIVLMDIQMPVMDGYSATKYIRKLSQ-FN-------------------ALPIIAMTAN 1077

Query: 814  VIQATYEECLRSGMDGYVSKPFEAEQL 840
            V++   ++C  +GM+G++ KP    Q+
Sbjct: 1078 VMKEDLQKCQSAGMNGHIGKPINFNQM 1104


>gi|399036702|ref|ZP_10733666.1| signal transduction histidine kinase [Rhizobium sp. CF122]
 gi|398065529|gb|EJL57150.1| signal transduction histidine kinase [Rhizobium sp. CF122]
          Length = 946

 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 178/624 (28%), Positives = 291/624 (46%), Gaps = 101/624 (16%)

Query: 236 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 295
           + + +E    +  L  +AEAAD  KS+FLA +SHEIRTPMNGVLGM ++L  T+LD  Q+
Sbjct: 385 VTEAKEREAELERLLSRAEAADRVKSEFLANMSHEIRTPMNGVLGMAELLAKTDLDTRQK 444

Query: 296 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 355
            ++     SG ALV++IN++LD +K+++G++ L   +F+L   ++DV +L S  + +K +
Sbjct: 445 TFIDIIVKSGNALVTIINDILDFSKIDAGQMTLRRTTFDLVDAIEDVATLLSSSAAEKNI 504

Query: 356 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415
           +L V  +  +P  +IGD GRFRQIITNL+GN++KFTE+GH+ V V               
Sbjct: 505 DLLVRTAPDLPSAVIGDAGRFRQIITNLIGNAVKFTERGHVLVDV--------------- 549

Query: 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 475
                                GF    QD             I   + VEDTG GIP + 
Sbjct: 550 ---------------------GFTPGAQDE------------IMASIRVEDTGIGIPGDK 576

Query: 476 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535
              IF  F Q+  S +R H GTG+GL+I+  LV    G +   S P  GS FT    F  
Sbjct: 577 LESIFDKFSQIDTSSTRRHEGTGLGLAITTGLVDLFGGYLEVDSQPGEGSVFTVNLPFVV 636

Query: 536 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 595
            ++             P  +    +G + L+VD   +  ++    +   G       D L
Sbjct: 637 AAARL----------APKPLPVNVRGARVLIVDDNAVNRQILTEQLAVWGFDGAAAGDGL 686

Query: 596 QCLSQIASGSKI---INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 652
           + ++ + +  ++   I+ ++++ ++      ++   +    +  C F+    +   S+  
Sbjct: 687 EAVAILEAADELGIGIDAVVLDYQM----PGMNGAEIARKLRADCRFERLPIIFLTSMDI 742

Query: 653 SRANTSTDGVSIPSVIMKPLRSSMLAASL----------QRAMGVGNKGNIRNWELPSM- 701
           S        ++  + +MKP R+++L  ++          Q A  V    N++    PS+ 
Sbjct: 743 SGTEKDFAALNGQAYLMKPARANVLRNTIVDVVRTSRTKQIATAVNILPNVQE-TAPSLL 801

Query: 702 ----SLRHLLLGR-KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 756
               S   +  G   +L+ +DN VN  V    L+  G + + V  G++A E     +   
Sbjct: 802 PKVESSERMPAGFIDVLVAEDNEVNQIVFKQILQETGVSFLVVSNGQEAVE-AWDRYTPR 860

Query: 757 ACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 816
              MD+ MP M+G +AT+ IR+ E    +R                  VPI+ +TA  + 
Sbjct: 861 IIMMDVSMPVMNGHDATRAIRDRERGQGHR------------------VPIIGVTAHALD 902

Query: 817 ATYEECLRSGMDGYVSKPFEAEQL 840
              + CL +GMD Y+SKP   E L
Sbjct: 903 VDRDLCLEAGMDDYMSKPISPELL 926


>gi|197264060|ref|ZP_03164134.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197242315|gb|EDY24935.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 918

 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 177/605 (29%), Positives = 287/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +     ++   G +   V+P    A+ +   +    ++V V S     L      
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             I+++ +  +E          L + + R       +   LLA    +            
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +       +   +++        ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 738

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E E+L+  +
Sbjct: 739 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLL 781

Query: 845 SRFFP 849
            R+ P
Sbjct: 782 LRYKP 786


>gi|440684403|ref|YP_007159198.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
 gi|428681522|gb|AFZ60288.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
          Length = 1382

 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 194/635 (30%), Positives = 308/635 (48%), Gaps = 96/635 (15%)

Query: 224  LVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 283
             VG I   T  +IA+ +     +   K++AE A++ K +FLAT+SHEIRTPMN V+GM  
Sbjct: 694  FVGIITDITDKKIAEEQ-----LKSAKEEAEIANLTKGEFLATMSHEIRTPMNAVIGMTG 748

Query: 284  MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 343
            +L+DT+L   Q ++    + SG A+++LIN++LD +K+ESGKLE+E   FNLR  L++ L
Sbjct: 749  LLLDTQLTPQQLEFAEIIRNSGDAMLTLINDILDFSKIESGKLEIEEQIFNLRTCLEESL 808

Query: 344  SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 403
             L + K+ +KG+ELA  +     E + GD  R RQI+ NL+ N+IKFT  G + ++V   
Sbjct: 809  DLVAPKASEKGLELAYLMYPETYEVISGDVTRLRQILVNLLSNAIKFTNSGEVILSV--T 866

Query: 404  EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 463
             ++ D  + ++E  S +N                                 + L  +  +
Sbjct: 867  SQIKD--QSDSEFISQQN---------------------------------SQLYEIKFT 891

Query: 464  VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 523
            V+DTG GIP +   R+F PF QV  S +R +GGTG+GL ISK L   M G++   S    
Sbjct: 892  VKDTGIGIPEDKMHRLFKPFSQVDASTTRHYGGTGLGLVISKRLTELMGGKMWVESTVGQ 951

Query: 524  GSTFTFTAV---FGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 580
            GS F FT V    G      + H+   ++N+           + L+VD      +     
Sbjct: 952  GSNFIFTIVSPFVGKSDIKYDYHHHHSIHNK-----------RLLIVDDNINNRQALILQ 1000

Query: 581  IQRLG-IQVEVVS--DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637
             Q  G + V   S  + L+ L +      I++M + E +             + +RKL  
Sbjct: 1001 SQSFGMVGVSAASGKEALKYLQEQQFDIAILDMQMPEMD--------GLTLASEIRKLNN 1052

Query: 638  GFQSKLFLLANSISSSRANTSTDGVSIPSV--IMKPLRSSML---AASLQRAMGVGNKGN 692
              +  L +L  SI   ++NT+   +++  V  + KP++ + L     ++ +   V  K N
Sbjct: 1053 CERLPLVMLT-SIGDGQSNTNYQNLNLEFVAYLTKPIKKANLLNILINISKNNVVMPKEN 1111

Query: 693  IRNWELPSMSLRHLL--LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 750
                +  S    H+   +  KIL+ +DN VN KVA   L+R G        G +   + +
Sbjct: 1112 TYQ-DTQSKFDSHMAEKIPLKILVAEDNVVNQKVAINILQRLGYRADVAANGLEVL-VAL 1169

Query: 751  PPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM 810
                +D   MD+QMPEMDG  AT+ I           +   +S   +         I+AM
Sbjct: 1170 RRQSYDVVLMDLQMPEMDGLTATRQIY----------KEWPLSKRPW---------IIAM 1210

Query: 811  TADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 845
            TA+ +Q   E+CL +GM+ Y +KP   E+L + +S
Sbjct: 1211 TANAMQGDREKCLAAGMNDYTTKPIRIEELTKALS 1245


>gi|110636005|ref|YP_676213.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1]
 gi|110286989|gb|ABG65048.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1]
          Length = 744

 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 177/602 (29%), Positives = 278/602 (46%), Gaps = 98/602 (16%)

Query: 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
           ++  +++AE A +AKS+FLATVSHEIRTPMNG++GM  +L DT L   Q+ YV     S 
Sbjct: 224 LVNARERAEQASIAKSRFLATVSHEIRTPMNGIIGMATLLSDTRLSSEQRTYVAAISTSA 283

Query: 306 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            AL++LI ++LD +K+E+G+LELE      R +++ V+ L + ++  K + L  +I+  V
Sbjct: 284 SALLALIEDLLDYSKIEAGRLELEPQRMAARELIESVIELMAVRAFTKKIGLGCHIAPTV 343

Query: 366 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
           P+T++ DPGR RQI+ NL+GN+IKFT++G + +TV                         
Sbjct: 344 PDTILADPGRLRQILLNLLGNAIKFTDEGGVLMTV------------------------- 378

Query: 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                         T   DG+             L   V+DTG GI  ++ SRIF  F Q
Sbjct: 379 -------------TTTIHDGAP-----------KLAFRVDDTGPGIEKDSLSRIFQEFEQ 414

Query: 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
              S +R HGG G+GL+I++ L+  M+G +   S P  G+TFT          ++ E   
Sbjct: 415 ADTSSTRKHGGAGLGLAITRRLIDAMEGTVTVDSAPGEGATFTVYIPLVGAEGSAAE--- 471

Query: 546 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 605
                     S   +G    ++ P  +  +     ++  G +  V   +   LS +    
Sbjct: 472 ---------TSLALKGFDVAILTPHAVEGEALAMTVRAHGGKARVFEGEKSALSLLRRRK 522

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKL---GCGFQSKLFLLANSISSSRANTSTDGV 662
              + ++++  + E D        + LR+L   G      L L+A +         T+G 
Sbjct: 523 SGFDAVIIDASL-ENDNG------DLLRRLCRNGLRVHQALTLIAPTDRGRLNKFRTNGY 575

Query: 663 SIPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 719
           +  + I +P R   L   L   Q A  V   G        +   R    G K+L+ +DN 
Sbjct: 576 N--AFIARPARDRTLLRLLLNPQTAENVAPIGEATARTKATNDGR----GLKVLLAEDNE 629

Query: 720 VNLKVAAAGLKRYGAAVVCVERGKKATELLM-PPHQFDACFMDIQMPEMDGFEATKIIRE 778
           +N  +A A L + G +V  V  G+ A ++L  P   FD   MD+ MP MDG +A   IR 
Sbjct: 630 INAMLARATLSKAGHSVAVVSNGRAAVDVLTHPARDFDIVLMDLHMPIMDGLDAIIQIRR 689

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
            E                 E+     +PIL ++AD  + T +  L  G  G+++KP E  
Sbjct: 690 YE-----------------EDTGLAPIPILVLSADGQEKTRQNALAQGATGFITKPLEPG 732

Query: 839 QL 840
           +L
Sbjct: 733 RL 734


>gi|417221179|ref|ZP_12024619.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           96.154]
 gi|386200981|gb|EIH99971.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           96.154]
          Length = 918

 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMSGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|261211547|ref|ZP_05925835.1| BarA sensory histidine kinase [Vibrio sp. RC341]
 gi|260839502|gb|EEX66128.1| BarA sensory histidine kinase [Vibrio sp. RC341]
          Length = 925

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 195/682 (28%), Positives = 320/682 (46%), Gaps = 125/682 (18%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L ++   I  + ++    H      I QAT +    +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQTDY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            +S   D+I+L   V DTG GI    Q+
Sbjct: 434 ---------------------------------RSLRDDVIDLQFMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +++Q +N++             L+++P    A + +  + + G++V     + +
Sbjct: 521 LPVNDGYDAQLLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVIYRSAIPE 569

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           + Q    +    + SK  N  +V  E+W K     T        +  G  S    LA+ +
Sbjct: 570 EEQSYDYVLLNLAPSKETNYTMV--ELWVKRALAMT------HNVIVGVPSTELALADRL 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASL--QRAMGVGNKGNIRNWELPSMSLRHLLL 708
                            I KPL    L  +L  Q+ + + +         P      L L
Sbjct: 622 MQHYP---------VKCISKPLSRKKLLQTLAAQQPLSLHSAQ-------PKPQADKLPL 665

Query: 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768
              ++ VDDN  NLK+  A L+     V+    G++A E     H FD   MDIQMP MD
Sbjct: 666 C--VMAVDDNPANLKLITALLQERVECVIACASGQEAIEQAQERH-FDIILMDIQMPHMD 722

Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
           G  A K I+++ H +                      P++A+TA  +    +  L++GMD
Sbjct: 723 GVTACKSIKQL-HGYQE-------------------TPVIAVTAHAMAGERDRLLKAGMD 762

Query: 829 GYVSKPFEAEQLYREVSRFFPP 850
            Y++KP E E + ++V   + P
Sbjct: 763 DYLTKPIE-EHILQQVLVHWSP 783


>gi|437153270|ref|ZP_20690376.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 629163]
 gi|435141021|gb|ELN27963.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 629163]
          Length = 918

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 177/613 (28%), Positives = 287/613 (46%), Gaps = 122/613 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         V  +G ST+  
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHIHLDLNPNVIIDGPSTACL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PN+ +++            +V  P      ++ Y I  L + V        
Sbjct: 535 AGKRLAYIEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTM 594

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
              ++A  + + + +L+     E+          N  KL  G  +               
Sbjct: 595 QHERLAKAASMTDFLLLALPCHEQI---------NAEKLKQGGAA--------------- 630

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
                    + ++KPL S+ L  +L     + +       +   +++        ++ VD
Sbjct: 631 ---------ACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
           DN  NLK+  A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I
Sbjct: 675 DNPANLKLIGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELI 733

Query: 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
            ++ H                        P++A+TA  +    E+ L +GM+ Y++KP E
Sbjct: 734 HQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIE 773

Query: 837 AEQLYREVSRFFP 849
            E+L+  + R+ P
Sbjct: 774 EEKLHNLLLRYKP 786


>gi|241205856|ref|YP_002976952.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240859746|gb|ACS57413.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 1131

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 176/622 (28%), Positives = 291/622 (46%), Gaps = 104/622 (16%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + +L  +AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L  T LD  Q+ +V     SG
Sbjct: 583  LRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKSG 642

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
             AL+++IN++LD +K+++G+++L   +F++   ++DV +L S  + +K +EL V  +  +
Sbjct: 643  NALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPDL 702

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  +IGD GRFRQI+TNL+GN++KFTE+GH+FV V                         
Sbjct: 703  PAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDV------------------------- 737

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                    F+ ++   I   + +EDTG GIP E    +F  F Q
Sbjct: 738  -----------------------GFQPAAGGEIMASIRIEDTGIGIPPEKLESVFDKFSQ 774

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
            V  S +R H GTG+GL+I+  LV    G +   S    GS FT    F   ++       
Sbjct: 775  VDASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWGKGSVFTINLPFAVAAARL----- 829

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL---GIQVEVVSDQLQCLSQIA 602
                 +P  +    QG + LVVD   +  ++    +      G+  E     L  L   A
Sbjct: 830  -----EPKPLPINVQGARILVVDDNEVNRRILTEQLSLWGFDGVAAEGGGTGLAILEAAA 884

Query: 603  SGSKIINMILVEQEVWEKD-TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
                 ++ ++++  + + +   V+     + R +       +FL +  IS +    +   
Sbjct: 885  DLGVTVDAVVLDYHMPDMNGADVARQLRADPRFVELPI---IFLTSMDISGTEKEFAA-- 939

Query: 662  VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----------- 710
            ++  + +MKP R+++L  ++   +       +   E+  +    ++              
Sbjct: 940  LNGHAHLMKPARANVLRNTVVEVVRASRVKQVSEAEIARLQTEAIVPAPAPVPQKRAAEF 999

Query: 711  -KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT---ELLMPPHQFDACFMDIQMPE 766
              +L+ +DN VN  V    L+  G + + VE G++A    E   P        MD+ MP 
Sbjct: 1000 VDVLVAEDNEVNQIVFTQILQGTGLSFLVVENGEEAVAAWERYTP----RIIMMDVSMPV 1055

Query: 767  MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG 826
            M+G +AT+ IRE E    +R                  VPI+ +TA  +++  E CL +G
Sbjct: 1056 MNGHQATQTIREREKGHGHR------------------VPIIGVTAHALESDRELCLDAG 1097

Query: 827  MDGYVSKPFEAEQLYREVSRFF 848
            MD Y+SKP   E L  ++ ++ 
Sbjct: 1098 MDDYMSKPISPELLEEKIRQWL 1119


>gi|432450921|ref|ZP_19693180.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE193]
 gi|433034604|ref|ZP_20222308.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE112]
 gi|430978655|gb|ELC95459.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE193]
 gi|431548883|gb|ELI22975.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE112]
          Length = 918

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|218709306|ref|YP_002416927.1| two-component regulatory system multi-sensor hybrid histidine kinase
            [Vibrio splendidus LGP32]
 gi|218322325|emb|CAV18455.1| putative two-component regulatory system; Multi-sensor hybrid
            histidine kinase [Vibrio splendidus LGP32]
          Length = 1223

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 180/607 (29%), Positives = 292/607 (48%), Gaps = 100/607 (16%)

Query: 259  AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 318
            AKS FLA +SHEIRTPMN ++GM  + + T+L   Q++Y+   + S   L+ LIN++LD 
Sbjct: 479  AKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQRNYIHKVKLSSDTLLGLINDILDF 538

Query: 319  AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 378
            +K+E+GKL++E V F L  +LD++ +L   ++ D+G+EL + +   VP  LIGDP R  Q
Sbjct: 539  SKIEAGKLDIEKVDFQLENVLDNITNLVGLRASDRGLELLIQVDRDVPTNLIGDPLRLGQ 598

Query: 379  IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 438
            I+ NL  N++KFTEKG + +++ + E   D I+                           
Sbjct: 599  ILINLSNNAVKFTEKGEVKISISVAERQGDDIK--------------------------- 631

Query: 439  KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 498
                                 L  +V D+G G+  E  S++FT F Q   S +R +GGTG
Sbjct: 632  ---------------------LNFAVSDSGIGMKQEQASKLFTKFTQADSSTTRKYGGTG 670

Query: 499  IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 558
            +GL+ISK L   M G+I   +    GSTF+FT       +T   H+ QQ       V + 
Sbjct: 671  LGLAISKELSQLMGGDIHVSTELGKGSTFSFTI------ATRVSHSIQQ---HRVVVPAS 721

Query: 559  FQGMKALVVD----PRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVE 614
               +K LVVD     R I   +    ++   I    V + L  L    + +K  ++++ +
Sbjct: 722  INNLKVLVVDDNSSARLIVGDILE-SLKLTPILSSSVDEALIELHTADAQNKPFDLVISD 780

Query: 615  QEVWEKDTSVSTLFVNNLRKLGCGFQ---SKLFLLANSISSSRAN-TSTDGVSIPSVIMK 670
             ++ ++D       V+ L +L  G Q    K+ +L        A      G  +PS++ K
Sbjct: 781  WKMPKRDG------VDLLAELKNGQQLTMPKIMMLTAYDREELAELIEQRGFEVPSILDK 834

Query: 671  PLRSSMLAASLQRAMGVGNKGNIRNWELP---SMSLRHLLLGRKILIVDDNNVNLKVAAA 727
            P+ SS L  S+    G+ +   +   EL     ++    L G  IL+V+DN +N ++A  
Sbjct: 835  PITSSHLYDSIVSLYGL-DSDRVSRSELEQQNQLANVQQLAGANILLVEDNEINQELATE 893

Query: 728  GLKRYGAAVVCVERGKKATEL----LMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783
             L+     V   E G++A +L    +     FD   MD QMP MDG+EAT+ IR      
Sbjct: 894  LLEGQQIKVTIAENGQQAIDLYQQAITDDVPFDGILMDCQMPVMDGYEATEYIR------ 947

Query: 784  NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYRE 843
                          + +++  +PI+AMTA+V++   E+ L  GM   ++KP +   ++  
Sbjct: 948  --------------QQINDQDIPIIAMTANVMERDKEKALSCGMSDIIAKPIDVGSMFAT 993

Query: 844  VSRFFPP 850
            ++ +  P
Sbjct: 994  LANWVSP 1000


>gi|159185161|ref|NP_355290.2| two component sensor kinase/response regulator hybrid [Agrobacterium
            fabrum str. C58]
 gi|159140432|gb|AAK88075.2| two component sensor kinase/response regulator hybrid [Agrobacterium
            fabrum str. C58]
          Length = 1231

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 188/636 (29%), Positives = 298/636 (46%), Gaps = 117/636 (18%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            +  L  +AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L  ++LD  Q+ +      SG
Sbjct: 668  LQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSKLDTRQKTFTDIIVKSG 727

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
             AL+++IN++LD +K+E+G+++L +V F+    ++DV+SL S  + +K +EL V I   V
Sbjct: 728  NALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKDIELIVRIDASV 787

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
               +IGD GRFRQI+TN++GN++KFTE GH+ V                ELS+       
Sbjct: 788  SGKVIGDAGRFRQIVTNIVGNAVKFTETGHVLV----------------ELSAQ------ 825

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                            + + S S F           + VED+G GIP++    IF  F Q
Sbjct: 826  ----------------SAEASESIFS----------LRVEDSGIGIPVDKLETIFDKFSQ 859

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
            V  S +R H GTG+GL+I+  LVG   G+I  VS    GS F     F            
Sbjct: 860  VDGSATRRHEGTGLGLAITVGLVGLFDGKINVVSEVGRGSAFEVDIPF------------ 907

Query: 546  QQMNNQPNS--VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQ 600
            Q M  + +   +S     ++ LV+D   +  ++    ++  GI    V +    +  L +
Sbjct: 908  QVMERRRDVPLLSVAIDDIRVLVIDDNDVNRRILTEQLRSWGIDGHAVENGPSGIAVLQE 967

Query: 601  IASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 660
             AS    I+ I+++  +      ++ L V    +    F     +   S+      T   
Sbjct: 968  AASLGFAIDAIILDYHM----PVMNGLDVVERIRADKRFDDIAIVFLTSMDVVGDETLFT 1023

Query: 661  GVSIPSVIMKPLRSSMLAASL-------------QRAMGVGNKGNIRNWE---------- 697
             +S+ + +MKP R+ +L ++L             Q  +  G  G     E          
Sbjct: 1024 DLSVQAHLMKPARARLLRSTLFDVVRDVRLKRIRQHPLAQGTGGEKARPESRPAEKKQRA 1083

Query: 698  -----LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 752
                 +P  S   LL    +L+ +DN+VN  V +  L++ G   + V  GK+A +     
Sbjct: 1084 EAPATVPERSRPCLL---DVLVAEDNDVNQIVFSQILQQAGLRFLIVGNGKRAVQ-AWEE 1139

Query: 753  HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA 812
            +      MD+ MP M+G +AT+ IR  E    +                + HVP++ +TA
Sbjct: 1140 YNPALILMDVSMPVMNGHQATQAIRAAEQAAGD----------------SRHVPVIGVTA 1183

Query: 813  DVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848
               +A  E CL +GMD Y+SKP   E L  +++++ 
Sbjct: 1184 HTQEADRERCLEAGMDDYLSKPISPESLEDKIAQWL 1219


>gi|82545085|ref|YP_409032.1| hybrid sensory histidine kinase BarA [Shigella boydii Sb227]
 gi|81246496|gb|ABB67204.1| sensor-regulator [Shigella boydii Sb227]
          Length = 918

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|333997328|ref|YP_004529940.1| multi-sensor hybrid histidine kinase [Treponema primitia ZAS-2]
 gi|333738372|gb|AEF83862.1| multi-sensor hybrid histidine kinase [Treponema primitia ZAS-2]
          Length = 811

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/621 (29%), Positives = 294/621 (47%), Gaps = 93/621 (14%)

Query: 238 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +VEE    +   ++ AE A++AKS+FL+ +SHEIRTPMN ++GM   +     +  ++DY
Sbjct: 269 RVEERTKELQVSQQAAERANMAKSEFLSNMSHEIRTPMNAIIGMT-TIGGRAANTERKDY 327

Query: 298 V-RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 356
                Q + + L+ +INE+LD +K+E+ KLEL  + FN   +L  V+++ + K ++K   
Sbjct: 328 AFGKIQDASQHLLGVINEILDMSKIEANKLELSFLEFNFEKMLQKVVNVINFKVEEKHQI 387

Query: 357 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETE 415
            +++I   +P  LIGD  R  Q+ITNL+GNS+KFT E G I +T  L+            
Sbjct: 388 FSIHIDKAIPPVLIGDDQRLAQVITNLLGNSVKFTPEGGAISLTTKLIAG---------- 437

Query: 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 475
              S+   + Y V                                 + V+D+G GI    
Sbjct: 438 -DESQGDDAEYTVQ--------------------------------IEVQDSGIGISPAQ 464

Query: 476 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535
           Q ++FT F Q     SR  GGTG+GL+ISK +V  M G I   S    GSTF FT     
Sbjct: 465 QDKLFTSFQQADSGTSRKFGGTGLGLAISKRIVEMMGGRIWIESELGKGSTFIFTVKARR 524

Query: 536 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRP-IRAKVSRYHIQRLGIQVEVVSDQ 594
           G S      +   N         +  ++ L VD  P IR   +    QR G   +V  D 
Sbjct: 525 GKSEYKSSLAPGRN---------WGNIRVLAVDDAPEIREYFAEI-AQRFGFACDVAPDA 574

Query: 595 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNL---RKLGCGFQSK-LFLLANSI 650
            + L+ I     + ++  V+   W+         +N +   RK+     SK + ++ +S 
Sbjct: 575 EEALTLIQKNG-VYDIYFVD---WQMPG------INGIELSRKIKEHQDSKSVVIMISST 624

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                        +   + KPL  S +A  +   +G G   +       ++S +    GR
Sbjct: 625 EWDLIQDEAKKAGVDKFLPKPLFPSPIADLITECLGQGAAPSGETGTEEAVSYK----GR 680

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP-PHQFDACFMDIQMPEMDG 769
           +IL+ +D ++N ++    L+     +VC   GK+A  +    P  F+  FMD+QMPEMDG
Sbjct: 681 RILLAEDVDINQEIVRTLLEPTELEIVCAGNGKEALRIFSEDPLGFNMIFMDVQMPEMDG 740

Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
           FEAT+ IR +E+  N +                  +PI+AMTA+V +   E CL SGM+ 
Sbjct: 741 FEATRSIRALENAPNAKT-----------------IPIVAMTANVFREDVERCLASGMND 783

Query: 830 YVSKPFEAEQLYREVSRFFPP 850
           +V KPF+ E++  ++ ++ PP
Sbjct: 784 HVGKPFDFEEILEKLRKYIPP 804


>gi|197249783|ref|YP_002147868.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197213486|gb|ACH50883.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 918

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 177/605 (29%), Positives = 287/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +     ++   G +   V+P    A+ +   +    ++V V S     L      
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             I+++ +  +E          L + + R       +   LLA    +            
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +       +   +++        ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 738

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E E+L+  +
Sbjct: 739 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLL 781

Query: 845 SRFFP 849
            R+ P
Sbjct: 782 LRYKP 786


>gi|168236004|ref|ZP_02661062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737545|ref|YP_002115910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|416425307|ref|ZP_11692281.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|416428914|ref|ZP_11694127.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|416438966|ref|ZP_11699843.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|416446200|ref|ZP_11704955.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|416451592|ref|ZP_11708342.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|416459829|ref|ZP_11714274.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|416471831|ref|ZP_11719362.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|416482580|ref|ZP_11723796.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|416493065|ref|ZP_11727852.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|416498528|ref|ZP_11730321.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|416504199|ref|ZP_11733146.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. SARB31]
 gi|416515518|ref|ZP_11738645.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. ATCC BAA710]
 gi|416527309|ref|ZP_11743147.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. LQC 10]
 gi|416533755|ref|ZP_11746573.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. SARB30]
 gi|416546922|ref|ZP_11754316.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|416549488|ref|ZP_11755331.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 29N]
 gi|416559639|ref|ZP_11760828.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 42N]
 gi|416577851|ref|ZP_11770137.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|416586919|ref|ZP_11775751.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|416591793|ref|ZP_11778737.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|416598159|ref|ZP_11782546.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|416606673|ref|ZP_11787914.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|416613850|ref|ZP_11792298.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|416620160|ref|ZP_11795518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|416634649|ref|ZP_11802629.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|416636842|ref|ZP_11803266.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|416647256|ref|ZP_11808255.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|416657149|ref|ZP_11813605.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|416670113|ref|ZP_11819827.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|416674964|ref|ZP_11821287.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|416693417|ref|ZP_11826736.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|416706147|ref|ZP_11831406.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|416712174|ref|ZP_11835885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|416718370|ref|ZP_11840478.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|416723275|ref|ZP_11844040.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|416733263|ref|ZP_11850354.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|416740317|ref|ZP_11854364.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|416746098|ref|ZP_11857676.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|416753590|ref|ZP_11860909.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|416761748|ref|ZP_11865799.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|416766552|ref|ZP_11869196.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|418481964|ref|ZP_13050987.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 80959-06]
 gi|418490423|ref|ZP_13056968.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035278]
 gi|418495948|ref|ZP_13062386.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035318]
 gi|418498765|ref|ZP_13065179.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035320]
 gi|418505463|ref|ZP_13071809.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035321]
 gi|418510033|ref|ZP_13076324.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035327]
 gi|418512301|ref|ZP_13078544.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Pomona str. ATCC 10729]
 gi|418524726|ref|ZP_13090711.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008286]
 gi|194713047|gb|ACF92268.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197290872|gb|EDY30226.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|322614233|gb|EFY11165.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620953|gb|EFY17811.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624016|gb|EFY20850.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628245|gb|EFY25034.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633364|gb|EFY30106.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636059|gb|EFY32767.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639395|gb|EFY36083.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322643743|gb|EFY40294.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648855|gb|EFY45302.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655152|gb|EFY51462.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658017|gb|EFY54285.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664118|gb|EFY60317.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667087|gb|EFY63259.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673135|gb|EFY69242.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677874|gb|EFY73937.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681048|gb|EFY77081.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685645|gb|EFY81639.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194784|gb|EFZ79971.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196535|gb|EFZ81683.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323205052|gb|EFZ90035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323212701|gb|EFZ97518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214816|gb|EFZ99564.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222545|gb|EGA06910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226425|gb|EGA10633.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230696|gb|EGA14814.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234953|gb|EGA19039.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238992|gb|EGA23042.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244650|gb|EGA28656.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247266|gb|EGA31232.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251798|gb|EGA35663.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257485|gb|EGA41175.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263270|gb|EGA46807.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267522|gb|EGA51006.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272711|gb|EGA56117.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|363556964|gb|EHL41177.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. LQC 10]
 gi|363558575|gb|EHL42766.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. SARB31]
 gi|363563549|gb|EHL47616.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. ATCC BAA710]
 gi|363567379|gb|EHL51377.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. SARB30]
 gi|363569437|gb|EHL53387.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 29N]
 gi|363575792|gb|EHL59641.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 42N]
 gi|366058464|gb|EHN22753.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035318]
 gi|366064697|gb|EHN28894.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 80959-06]
 gi|366066064|gb|EHN30240.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035278]
 gi|366067770|gb|EHN31918.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035321]
 gi|366073517|gb|EHN37590.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035320]
 gi|366077633|gb|EHN41647.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035327]
 gi|366083808|gb|EHN47724.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Pomona str. ATCC 10729]
 gi|366830699|gb|EHN57569.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|372207585|gb|EHP21084.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008286]
          Length = 918

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 177/605 (29%), Positives = 287/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +     ++   G +   V+P    A+ +   +    ++V V S     L      
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             I+++ +  +E          L + + R       +   LLA    +            
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +       +   +++        ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 738

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E E+L+  +
Sbjct: 739 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLL 781

Query: 845 SRFFP 849
            R+ P
Sbjct: 782 LRYKP 786


>gi|428225087|ref|YP_007109184.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
 gi|427984988|gb|AFY66132.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
          Length = 1764

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 191/632 (30%), Positives = 302/632 (47%), Gaps = 118/632 (18%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++AEAA+ AKS+FLA +SHEIRTPMN V+GM  +L+DT L+  Q+D+V T + SG AL+
Sbjct: 1060 KQEAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTPLNAQQRDFVETIRFSGDALL 1119

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            ++IN++LD +K+ESGKLELE   F+LR  +++V+ L   ++ +K +ELA  +  + P   
Sbjct: 1120 TIINDILDFSKIESGKLELENHPFDLRTCIEEVIDLMVPRAVEKDLELAYLVDSQSPTQF 1179

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GD  R RQI+ NLMGN+IKFT  G + +TV +   + ++I  +    SS+ TL      
Sbjct: 1180 VGDVTRLRQILVNLMGNAIKFTTVGEVVLTV-MARPLDEAIAAD---GSSRYTLQ----- 1230

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                             +V+DTG GI  +A  R+F PF Q   S
Sbjct: 1231 --------------------------------FAVKDTGIGIAPDAMDRLFKPFSQADAS 1258

Query: 490  ISRTHGGTGIGLSISKYLVGRM--------KGEIG------------------------- 516
             +R +GGTG+GL IS+ L   M        +G+IG                         
Sbjct: 1259 TTREYGGTGLGLVISQRLSQMMGGTLWVESRGKIGGYPPEDIAAAKHPAADARSLVPYES 1318

Query: 517  ---FVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIR 573
                   P  GSTF  T V     + S +H    + + P  +  +    + L+VD     
Sbjct: 1319 SSQSAPKPGPGSTFYCTIV---AQAVSADHA---ILSCP--LPHQLTNKRLLIVDDNATN 1370

Query: 574  AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLR 633
             K+ +   +   ++   VS   + +  +  G    ++ +++ ++ E D          +R
Sbjct: 1371 RKILQMQAESWKMKPFAVSSAHEAIDLLEHGEN-FDIAILDMQMPEMD---GLSLAVTMR 1426

Query: 634  KLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN---K 690
            + G      L +L +       + S++     + + KP++ S L  +L  A+ + N   K
Sbjct: 1427 RYGQCEHIPLLMLTSLGQLQECHQSSEA-RFAACLSKPVKQSQLYEAL--ALALSNQPIK 1483

Query: 691  GNIRNWELPSMSLRHLL--LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL 748
             N+   E P ++  HL      +IL+ +D  VN KVA   L++ G        G +    
Sbjct: 1484 ANVEYREAPPVN-PHLAEQYPLRILLAEDTVVNQKVALLMLQKMGYRADVAGNGIEVLAA 1542

Query: 749  LMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL 808
            L     +D   MD+QMPEMDG E T+           RIR+GE         S+    I+
Sbjct: 1543 L-KRQPYDLILMDVQMPEMDGLETTR-----------RIRQGE--------GSDNQPWIV 1582

Query: 809  AMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
            AMTA+ ++   E+CL +GMD Y+SKP   ++L
Sbjct: 1583 AMTANAMRGDREQCLAAGMDDYISKPVHIQEL 1614


>gi|427657191|ref|ZP_18952846.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm10]
 gi|414045123|gb|EKT27550.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm10]
          Length = 918

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 177/605 (29%), Positives = 287/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +     ++   G +   V+P    A+ +   +    ++V V S     L      
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             I+++ +  +E          L + + R       +   LLA    +            
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +       +   +++        ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 738

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E E+L+  +
Sbjct: 739 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLL 781

Query: 845 SRFFP 849
            R+ P
Sbjct: 782 LRYKP 786


>gi|419233820|ref|ZP_13776592.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC9B]
 gi|378075627|gb|EHW37641.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC9B]
          Length = 918

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|16766264|ref|NP_461879.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161615886|ref|YP_001589851.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550176|ref|ZP_02343933.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993450|ref|ZP_02574544.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168231049|ref|ZP_02656107.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168261898|ref|ZP_02683871.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168463891|ref|ZP_02697808.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168820322|ref|ZP_02832322.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194444640|ref|YP_002042209.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194471010|ref|ZP_03076994.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|204928346|ref|ZP_03219546.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|224584749|ref|YP_002638547.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909738|ref|ZP_04653575.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|374978978|ref|ZP_09720317.1| BarA sensory histidine kinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|375002705|ref|ZP_09727045.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Salmonella enterica subsp. enterica serovar
           Infantis str. SARB27]
 gi|378446315|ref|YP_005233947.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|378451715|ref|YP_005239075.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|378700871|ref|YP_005182828.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|378985551|ref|YP_005248707.1| hybrid two-component sensor kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|378990282|ref|YP_005253446.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
 gi|379702216|ref|YP_005243944.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. ST4/74]
 gi|383497629|ref|YP_005398318.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 798]
 gi|409246649|ref|YP_006887353.1| sensor-regulator, activates OmpR by phophorylation [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|416565819|ref|ZP_11763640.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 4441 H]
 gi|418761778|ref|ZP_13317916.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 35185]
 gi|418766281|ref|ZP_13322360.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 35199]
 gi|418771605|ref|ZP_13327612.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21539]
 gi|418773624|ref|ZP_13329597.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 33953]
 gi|418778568|ref|ZP_13334478.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 35188]
 gi|418783254|ref|ZP_13339101.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21559]
 gi|418801188|ref|ZP_13356825.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 35202]
 gi|418806162|ref|ZP_13361734.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21550]
 gi|418810322|ref|ZP_13365862.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 22513]
 gi|418817940|ref|ZP_13373419.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21538]
 gi|418823008|ref|ZP_13378417.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 22425]
 gi|418824627|ref|ZP_13379977.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 22462]
 gi|418830902|ref|ZP_13385860.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM N18486]
 gi|418837363|ref|ZP_13392238.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM N1543]
 gi|418842627|ref|ZP_13397437.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21554]
 gi|418843513|ref|ZP_13398310.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19443]
 gi|418848093|ref|ZP_13402833.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 37978]
 gi|418857435|ref|ZP_13412062.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19470]
 gi|418862511|ref|ZP_13417050.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19536]
 gi|418869827|ref|ZP_13424260.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 4176]
 gi|419787105|ref|ZP_14312820.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. Levine 1]
 gi|419793500|ref|ZP_14319123.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. Levine 15]
 gi|421884102|ref|ZP_16315320.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Senftenberg str. SS209]
 gi|422032209|ref|ZP_16378324.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm2]
 gi|427553841|ref|ZP_18928817.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm8]
 gi|427571395|ref|ZP_18933532.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm9]
 gi|427592103|ref|ZP_18938331.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm3]
 gi|427615479|ref|ZP_18943218.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm4]
 gi|427639533|ref|ZP_18948098.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm6]
 gi|427662506|ref|ZP_18957809.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm11]
 gi|427676028|ref|ZP_18962625.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm12]
 gi|452123223|ref|YP_007473471.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Javiana str. CFSAN001992]
 gi|6996656|gb|AAF34823.1|AF171069_1 BarA sensor kinase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16421509|gb|AAL21838.1| sensory histidine kinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161365250|gb|ABX69018.1| hypothetical protein SPAB_03679 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403303|gb|ACF63525.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194457374|gb|EDX46213.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|195633256|gb|EDX51670.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|204322668|gb|EDZ07865.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205324815|gb|EDZ12654.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328470|gb|EDZ15234.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205334634|gb|EDZ21398.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205342849|gb|EDZ29613.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349206|gb|EDZ35837.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|224469276|gb|ACN47106.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261248094|emb|CBG25929.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995094|gb|ACY89979.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159519|emb|CBW19038.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913980|dbj|BAJ37954.1| hybrid two-component sensor kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087383|emb|CBY97148.1| sensor-regulator, activates OmpR by phophorylation [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321225638|gb|EFX50692.1| BarA sensory histidine kinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323131315|gb|ADX18745.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. ST4/74]
 gi|332989829|gb|AEF08812.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
 gi|353077393|gb|EHB43153.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Salmonella enterica subsp. enterica serovar
           Infantis str. SARB27]
 gi|363579816|gb|EHL63588.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 4441 H]
 gi|379986337|emb|CCF87593.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Senftenberg str. SS209]
 gi|380464450|gb|AFD59853.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 798]
 gi|392617479|gb|EIW99904.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. Levine 15]
 gi|392621048|gb|EIX03414.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. Levine 1]
 gi|392734133|gb|EIZ91324.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21539]
 gi|392738530|gb|EIZ95671.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 35185]
 gi|392738999|gb|EIZ96139.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 35199]
 gi|392752664|gb|EJA09604.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 33953]
 gi|392755777|gb|EJA12686.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 35188]
 gi|392757102|gb|EJA13992.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21559]
 gi|392780909|gb|EJA37560.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 35202]
 gi|392781270|gb|EJA37911.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 22513]
 gi|392782779|gb|EJA39409.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21550]
 gi|392785902|gb|EJA42459.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 22425]
 gi|392786352|gb|EJA42908.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21538]
 gi|392799439|gb|EJA55698.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM N1543]
 gi|392800098|gb|EJA56336.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM N18486]
 gi|392807198|gb|EJA63282.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21554]
 gi|392816849|gb|EJA72771.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19443]
 gi|392820948|gb|EJA76782.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 22462]
 gi|392824152|gb|EJA79943.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 37978]
 gi|392833908|gb|EJA89518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19536]
 gi|392834909|gb|EJA90509.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19470]
 gi|392836290|gb|EJA91878.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 4176]
 gi|414016421|gb|EKT00194.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm8]
 gi|414016748|gb|EKT00508.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm2]
 gi|414029669|gb|EKT12826.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm9]
 gi|414031216|gb|EKT14291.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm3]
 gi|414034283|gb|EKT17215.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm4]
 gi|414044595|gb|EKT27037.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm6]
 gi|414049999|gb|EKT32188.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm11]
 gi|414057576|gb|EKT39330.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm12]
 gi|451912227|gb|AGF84033.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Javiana str. CFSAN001992]
          Length = 918

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 177/605 (29%), Positives = 287/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +     ++   G +   V+P    A+ +   +    ++V V S     L      
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             I+++ +  +E          L + + R       +   LLA    +            
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +       +   +++        ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 738

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E E+L+  +
Sbjct: 739 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLL 781

Query: 845 SRFFP 849
            R+ P
Sbjct: 782 LRYKP 786


>gi|163793734|ref|ZP_02187708.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199]
 gi|159180845|gb|EDP65362.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199]
          Length = 1311

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 177/592 (29%), Positives = 278/592 (46%), Gaps = 87/592 (14%)

Query: 263  FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVE 322
            FLA +SHEIRTPMNGV+G+  + + +EL    +DY+     S   L+ +I+++LD +K+E
Sbjct: 571  FLANMSHEIRTPMNGVIGLSGLALKSELPEHARDYLEKINRSSLILLRIIDDILDFSKIE 630

Query: 323  SGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITN 382
            +G++ +EA  F+L  +L DV +L + + + K VE+       +P TL+GDP R  QI+ N
Sbjct: 631  AGQMSIEATEFDLDDVLQDVATLIADRQEQKPVEVVFSSEPDLPRTLVGDPHRLGQILLN 690

Query: 383  LMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 442
            L+GN++KFTE G I V +   E + D +                                
Sbjct: 691  LIGNALKFTEAGEIVVRISATERLEDQL-------------------------------- 718

Query: 443  QDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLS 502
                             L VSV DTG G+  E  +R+F  F Q   S +R  GGTG+GL+
Sbjct: 719  ----------------RLQVSVADTGIGMTDEQMARLFKAFSQADGSTTRRFGGTGLGLA 762

Query: 503  ISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGM 562
            I K LV  M G I   S P  GSTF+FT + G+  +      ++Q++  P+++       
Sbjct: 763  ICKQLVELMGGTISVESTPGAGSTFSFTILVGDRGADGERQLARQID--PSAI------- 813

Query: 563  KALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASG---SKIINMILVEQEVW 618
            + L+V+   +   V    ++ L    VE V D    L   A      +  +++LV+   W
Sbjct: 814  RTLIVEDNAVARAVLADTLKGLRFTDVEAVGDGPAALGAFAEAQLRGQPFDLVLVD---W 870

Query: 619  EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLA 678
            +            L++L         L+  + S +        V I  V++KP+  SML 
Sbjct: 871  KMPGMDGIATARRLKELSTPGAVPSILMVTAHSRAEVVEHAREVGILKVLVKPVNVSMLV 930

Query: 679  ASLQRAMGVGNKGNIRNWE--LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAV 736
             S+  A+  G   +    E   P    R  L G ++L+V+DN +N ++A   L+  G  V
Sbjct: 931  DSIADALDAGAGAHAVTGEGRGPETVPRPALKGVRVLLVEDNEINQQIAREVLEDVGVTV 990

Query: 737  VCVERGKKATELLMPPHQF-DACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIE 795
               + G  A  +L       DA  MD+QMPE+DG+E T+ IR      ++R+        
Sbjct: 991  AIADNGMIALSMLRGNGPLPDAILMDLQMPELDGYETTRWIRS-----DDRL-------- 1037

Query: 796  AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                    H+PI+AMTA V     + CL +GM  +V+KP +  QL   + R+
Sbjct: 1038 -------AHIPIIAMTAHVTDDERKRCLAAGMVDHVAKPVDVRQLLDTLERW 1082


>gi|417806315|ref|ZP_12453259.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
           LB226692]
 gi|417834069|ref|ZP_12480515.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
           01-09591]
 gi|340733065|gb|EGR62197.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
           01-09591]
 gi|340739048|gb|EGR73285.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
           LB226692]
          Length = 811

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 176 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 235

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 236 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 295

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 296 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 352

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 353 DQSRLFQAFR---------------------------------------------QADAS 367

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 368 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 427

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 428 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 484

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 485 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 516

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 517 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 567

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 568 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 624

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 625 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 664

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 665 IEEERLHNLLLRYKP 679


>gi|415811652|ref|ZP_11503965.1| signal transduction histidine-protein kinase barA [Escherichia coli
           LT-68]
 gi|323172911|gb|EFZ58542.1| signal transduction histidine-protein kinase barA [Escherichia coli
           LT-68]
          Length = 918

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QRQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|194434684|ref|ZP_03066938.1| sensor histidine kinase/response regulator BarA [Shigella
           dysenteriae 1012]
 gi|417673505|ref|ZP_12322956.1| signal transduction histidine-protein kinase barA [Shigella
           dysenteriae 155-74]
 gi|194417081|gb|EDX33196.1| sensor histidine kinase/response regulator BarA [Shigella
           dysenteriae 1012]
 gi|332089100|gb|EGI94210.1| signal transduction histidine-protein kinase barA [Shigella
           dysenteriae 155-74]
          Length = 918

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|153836217|ref|ZP_01988884.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AQ3810]
 gi|149750492|gb|EDM61237.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AQ3810]
          Length = 1051

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 196/623 (31%), Positives = 290/623 (46%), Gaps = 99/623 (15%)

Query: 225 VGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDM 284
           + H  +    ++ K +ED       K  A  A  AKS FLA +SHEIRTP+NGV+G+ ++
Sbjct: 363 LSHEREQAKQKLTKAKEDAE---RAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEV 419

Query: 285 LMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLS 344
           L DT L  TQ+DYV T + S + L+SLIN+VLD +K+ESG L +   S  +R  + D+ S
Sbjct: 420 LADTPLTATQRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIAS 479

Query: 345 LFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 404
           + S K+++KG+EL V IS   P  ++ D  R RQ+I N M N++KFTE+G + +++  +E
Sbjct: 480 IVSPKAKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLE 539

Query: 405 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSV 464
                                                N+  +   F            SV
Sbjct: 540 S------------------------------------NESEAIIEF------------SV 551

Query: 465 EDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 524
           +D+G GI  + Q RIF PF Q   S +R  GGTG+GL+IS  LV  M G I   S    G
Sbjct: 552 QDSGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLESEKGRG 611

Query: 525 STFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL 584
           S F F        S ++ H    +NNQ             LV D   +  K+ R  +   
Sbjct: 612 SRFYFQ--LTAPISQAHFHARHTVNNQI-----------WLVCDDSDLETKL-RNELSFY 657

Query: 585 GIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSV-STLFVNNLRKLGCGFQSKL 643
            IQV      L  L    +  + I ++ VE      D +V +T  + NL       Q   
Sbjct: 658 QIQVHQSVHDLSALPTWINDKERIIILYVET---TPDAAVKNTDLMRNLEH-----QHVQ 709

Query: 644 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL 703
             L   + S + +    G  + ++I +PL    L  +L+       +    +   P+  L
Sbjct: 710 VCLLKHLHSQQLDF---GHRVAAIITQPLLGQRLLKALESCAERFTQS--ISVVQPATRL 764

Query: 704 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 763
             L    K+L+VDDN VN K+A   + + G +      G++A ++     Q+    MD  
Sbjct: 765 ETL---PKVLVVDDNTVNQKIAGLHVTKAGFSFDVAANGEEAVDMFRTS-QYCLILMDCM 820

Query: 764 MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 823
           MP MDGFEATK IR+               IE  EN   F +PI+A+TA V+    ++C 
Sbjct: 821 MPVMDGFEATKQIRQ---------------IELKEN-RTFRIPIIALTASVVDDDIQKCF 864

Query: 824 RSGMDGYVSKPFEAEQLYREVSR 846
             GMD YV KPF+A+ L  ++ +
Sbjct: 865 DVGMDDYVPKPFKADLLKEKLDK 887



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 130/299 (43%), Gaps = 37/299 (12%)

Query: 563  KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDT 622
            K LVVD   +  K++  H+ + G   +V ++  + +    +      +IL++  +   D 
Sbjct: 769  KVLVVDDNTVNQKIAGLHVTKAGFSFDVAANGEEAVDMFRTSQYC--LILMDCMMPVMDG 826

Query: 623  SVSTLFVNNLR-KLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 681
              +T  +  +  K    F+  +  L  S+         D V +   + KP ++ +L   L
Sbjct: 827  FEATKQIRQIELKENRTFRIPIIALTASVVDDDIQKCFD-VGMDDYVPKPFKADLLKEKL 885

Query: 682  QRAMGVG---------NKGNIRNWELPSMSLR-------HLLLGRKILIVDDNNVNLKVA 725
             +A+G+          N+ N+  +E P    R         +   +IL+V+DN VN KVA
Sbjct: 886  DKAVGLRLPVTASTKLNQSNLPAFEEPEFKQRVGEALSAAPMRRERILLVEDNRVNQKVA 945

Query: 726  AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785
            +  L + G      E G+ A E+      FD   MD  MP MDGFEATK IR  E     
Sbjct: 946  SLLLSKAGYQFEVAENGQIAVEMFQRDGGFDIILMDCMMPVMDGFEATKQIRAYE----- 1000

Query: 786  RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                  + +E          PI+A+TA V+    + C  SGMD YV KP   E+L  ++
Sbjct: 1001 ----ASLGLEK--------TPIIALTASVVDDDIQRCFDSGMDAYVPKPVRKEKLLHQI 1047


>gi|62181468|ref|YP_217885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|375115806|ref|ZP_09760976.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SCSA50]
 gi|62129101|gb|AAX66804.1| sensory histidine kinase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322715952|gb|EFZ07523.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SCSA50]
          Length = 918

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 177/605 (29%), Positives = 287/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +     ++   G +   V+P    A+ +   +    ++V V S     L      
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             I+++ +  +E          L + + R       +   LLA    +            
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +       +   +++        ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 738

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E E+L+  +
Sbjct: 739 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLL 781

Query: 845 SRFFP 849
            R+ P
Sbjct: 782 LRYKP 786


>gi|15803307|ref|NP_289340.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           EDL933]
 gi|25308230|pir||G85929 hypothetical protein barA [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517258|gb|AAG57899.1|AE005506_7 sensor-regulator, activates OmpR by phophorylation [Escherichia
           coli O157:H7 str. EDL933]
          Length = 918

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTXTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|375129950|ref|YP_004992049.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC
           11218]
 gi|315179123|gb|ADT86037.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC
           11218]
          Length = 915

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 194/682 (28%), Positives = 323/682 (47%), Gaps = 123/682 (18%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L ++   I  + ++    H      I QAT +    +E
Sbjct: 190 NMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 249

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 250 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 309

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  +  L++V++L +  + +KG+E+
Sbjct: 310 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEI 369

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + +  ++P  L+GDP R +Q++TNL+GNSIKFTE+G+I ++V +  +  D +E++    
Sbjct: 370 TLKVDPKIPAGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQRDDVVELQ---- 425

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                                         V DTG GI    Q+
Sbjct: 426 --------------------------------------------FMVRDTGIGISERQQA 441

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT       
Sbjct: 442 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRL---- 497

Query: 538 STSNEHNSQQ-MNN--QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV---- 590
                H ++  M++   P ++S +    + L+V+P    A + +  + + G+ V      
Sbjct: 498 -----HITEMPMSDWLDPKALSQK----QLLLVEPNMQAASIVQQLLVQAGLTVTYRSAM 548

Query: 591 --VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 648
              SD    +    + SK  ++ LVEQ V                +   G  S + +   
Sbjct: 549 PEESDHFDYVLLNLAPSKETDVELVEQWV----------------QRSIGISSHVIIGTP 592

Query: 649 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL 708
           S   + A+       +   I KPL    L  +L     + ++  + +    ++ ++   +
Sbjct: 593 STELALADLLMKQYPV-QCITKPLSRKKLLQTL-----IAHQPVVIDAPAQAVPVKQDKM 646

Query: 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768
              ++ VDDN  NLK+  A L+    AVV    G+ A E     H FD   MDIQMP MD
Sbjct: 647 PLTVMAVDDNPANLKLITALLQERVEAVVSCTNGQDAIEQARQRH-FDIILMDIQMPHMD 705

Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
           G  A K I+++E N N                     P++A+TA  +    +  L++GMD
Sbjct: 706 GVTACKAIKQLELNQNT--------------------PVIAVTAHAMSGERDRLLKAGMD 745

Query: 829 GYVSKPFEAEQLYREVSRFFPP 850
            Y++KP E E + ++V   + P
Sbjct: 746 DYLTKPIE-EHILQQVLVHWSP 766


>gi|15598658|ref|NP_252152.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|418588737|ref|ZP_13152735.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
 gi|421518003|ref|ZP_15964677.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
 gi|9949605|gb|AAG06850.1|AE004767_1 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAO1]
 gi|375040396|gb|EHS33172.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
 gi|404347485|gb|EJZ73834.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
          Length = 919

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 188/628 (29%), Positives = 291/628 (46%), Gaps = 108/628 (17%)

Query: 233 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 292
            +RI  ++E+     +  ++A   + AKS+FLA +SHEIRTP+NGVLGML +L DT LD 
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440

Query: 293 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 352
            Q  YV T  +SG AL+S+IN++LD A++ESGKL LE + F+L  +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500

Query: 353 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 412
           K + L + +   VP  L GDP R RQ++ NL+ N++KFT +GH+ V V            
Sbjct: 501 KRLHLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549

Query: 413 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 472
                                     + F++ G              L+ SV D+G GI 
Sbjct: 550 --------------------------RRFDEGGRE-----------RLLYSVSDSGIGIS 572

Query: 473 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532
            +AQ  +F  F Q   S +R +GG+G+GL+IS+ LV  M G I   S P  G+ F+    
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632

Query: 533 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 591
                 +   +  +Q + ++P  ++SE      L +D         +  ++R G++VE  
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679

Query: 592 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 645
               +CL      + + +     +LV    W    S+   TL+           Q +  L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728

Query: 646 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 701
           L       +     +G+ + +    V +K LR ++L    +R    G        E P  
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERPPD 788

Query: 702 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT-ELLMPPHQFDACFM 760
           +         IL+ +DN VN  V    L + G AV     G+ A  E L  P+      M
Sbjct: 789 A-------PCILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 841

Query: 761 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
           D +MPEMDGFEAT++IR  E              + +       VPI+A+TA ++     
Sbjct: 842 DGEMPEMDGFEATRLIRREER------------AQGWP-----RVPIVALTAHILDEHRR 884

Query: 821 ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             + +GMD Y+ KP +  +LY  + R  
Sbjct: 885 AGIEAGMDAYLGKPVDRAELYATLERLL 912


>gi|422970083|ref|ZP_16973876.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA124]
 gi|371600461|gb|EHN89233.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA124]
          Length = 918

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|432628412|ref|ZP_19864384.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE77]
 gi|431161705|gb|ELE62174.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE77]
          Length = 918

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|407793745|ref|ZP_11140777.1| hybrid sensor histidine kinase [Idiomarina xiamenensis 10-D-4]
 gi|407214444|gb|EKE84292.1| hybrid sensor histidine kinase [Idiomarina xiamenensis 10-D-4]
          Length = 874

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 167/606 (27%), Positives = 282/606 (46%), Gaps = 78/606 (12%)

Query: 245 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 304
            M + K++AE A+ AK +FLA +SHEIRTP+N ++GM ++ + TELD  Q  Y+R   +S
Sbjct: 194 AMEQAKEQAEQANQAKGEFLANMSHEIRTPINAIVGMANLCLKTELDAKQTRYLRVIDSS 253

Query: 305 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 364
            KAL+ +IN++LD +K+++GKL +E + F+L  +L  +  +F+ ++ DK +E  + +   
Sbjct: 254 SKALLGVINDILDFSKIDAGKLVMEQIPFDLEDVLTTLADMFAFRAYDKDLEFIINLPAS 313

Query: 365 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 424
           +P  L+GDP R  Q++ NL+ N+IKFTE G I V V L+++                   
Sbjct: 314 IPTLLLGDPLRLNQVLVNLVSNAIKFTEDGEINVGVTLLDK------------------- 354

Query: 425 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484
                                        S D + L +SV DTG G+  E ++ +F  F 
Sbjct: 355 -----------------------------SEDKVWLRISVTDTGIGMDEEQRANLFKAFT 385

Query: 485 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 544
           Q   S +R +GGTG+GL+IS+ L+  M G+IG  S    GSTF          S  + H+
Sbjct: 386 QADTSTTRKYGGTGLGLAISRRLIQLMHGDIGVTSAAGQGSTFYIELTLPLQDSQDSSHH 445

Query: 545 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
                    ++    Q  + L +D      ++    +   G+QV+V     Q L+ + + 
Sbjct: 446 --------QNLLKRLQNTRILAIDDNLSTREMLYEMLSAYGMQVKVCRTAEQGLALLNAA 497

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
           ++      V    W         F   + +          ++A+   +   +       +
Sbjct: 498 AEAEQPYQVALVDWRLPGMDGIEFCQQVTQNSQLHDKPKLIIASGYYAEEMSDQAHRAGV 557

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
              I KP  ++ LA SL   +  G +G + + +     +   +    IL+V+DN +N  V
Sbjct: 558 ADFITKPYTAATLARSLTSVLS-GQQGKLGSEQPSRQQIPEQIRQAPILVVEDNEINQHV 616

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
           A   L  +G  V   E G++A + +     +    MDIQMP MDG++A + IR       
Sbjct: 617 ARELLTGHGFQVDIAENGQQAVDKVQ-QQSYAMVLMDIQMPVMDGYKAAETIR------- 668

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                        +  S   +PI+AMTA+ +    E+   +GM G+++KP + +QL   +
Sbjct: 669 -------------QQFSYQRLPIVAMTANAMTGDAEKSSAAGMQGHLAKPIDEDQLLAML 715

Query: 845 SRFFPP 850
            R+  P
Sbjct: 716 IRWCIP 721


>gi|399521248|ref|ZP_10761988.1| K07678 two-component system, NarL family, sensor histidine kinase
           BarA [Pseudomonas pseudoalcaligenes CECT 5344]
 gi|399110486|emb|CCH38547.1| K07678 two-component system, NarL family, sensor histidine kinase
           BarA [Pseudomonas pseudoalcaligenes CECT 5344]
          Length = 923

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 189/632 (29%), Positives = 283/632 (44%), Gaps = 131/632 (20%)

Query: 236 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 295
           I  +E D+      +K+A  A   KS+FLA +SHEIRTP+NG+LG  ++L  +EL   QQ
Sbjct: 272 IQNIELDFA-----RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQ 326

Query: 296 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 355
           DY+ T + S  +L+ +INEVLD +K+E+GKL LE++ FNLR +L D L++ +  + +K +
Sbjct: 327 DYLSTIEKSADSLLGIINEVLDFSKIEAGKLMLESIPFNLRDLLQDTLTILAPAAHEKQL 386

Query: 356 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415
           EL   I    P  L GDP R +Q++TNL+ N+IKFT +G I +   + +E  DS +    
Sbjct: 387 ELVSLIYRDTPLALRGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESADSAQ---- 442

Query: 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 475
                                                       L +SV DTG G+  E 
Sbjct: 443 --------------------------------------------LRISVMDTGIGLSDED 458

Query: 476 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535
              +F  F Q   S+SR  GGTG+GL ISK L+ +M GEIG  S P  GS F  T     
Sbjct: 459 LRALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWITLTLPK 518

Query: 536 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 595
                        ++  +   +  QG +  V++   +  +   + ++  G++VE  +D  
Sbjct: 519 AR-----------DDAEDLPRASLQGRRVAVLESHELARQALAHQLEDCGLEVESFADPG 567

Query: 596 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVN--------------NLRKLGCGF-- 639
           Q    +            +Q+  E+  S++ L +                L +LGC    
Sbjct: 568 QLFDAVN-----------QQQNQERPLSLAVLGITASQIPPDSLGQRIEELDRLGCKALV 616

Query: 640 ---QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW 696
               ++L L  +S+  + A         P    K  ++ +   S QR         I N 
Sbjct: 617 LCPTTELGLFHDSLPDAYAQLQAK----PPCTRKLYKALVELVSPQRP--ASESLTISNT 670

Query: 697 ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QF 755
             P           +IL  DDN  NL +    L   GA V  V+ G  A E +   H  F
Sbjct: 671 RRP-----------QILCADDNPANLLLVQTLLDDLGAQVTAVDSGYAAIEAVQ--HGSF 717

Query: 756 DACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815
           D  FMD+QMP MDG EAT+ IR+ E        +G  +            PI+A+TA  +
Sbjct: 718 DLVFMDVQMPGMDGREATEAIRQWESE------QGRSA-----------TPIIALTAHAL 760

Query: 816 QATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
                  L+SGMD Y++KP    QL + V ++
Sbjct: 761 ANEKRALLQSGMDDYLTKPINERQLAQVVLKW 792


>gi|110642927|ref|YP_670657.1| hybrid sensory histidine kinase BarA [Escherichia coli 536]
 gi|191171166|ref|ZP_03032716.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           F11]
 gi|300976311|ref|ZP_07173375.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|422373090|ref|ZP_16453419.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 60-1]
 gi|427805947|ref|ZP_18973014.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
           coli chi7122]
 gi|427810540|ref|ZP_18977605.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
           coli]
 gi|432466935|ref|ZP_19709021.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE205]
 gi|432472087|ref|ZP_19714127.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE206]
 gi|432582132|ref|ZP_19818546.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE57]
 gi|432714496|ref|ZP_19949529.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE8]
 gi|433073980|ref|ZP_20260627.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE129]
 gi|433078934|ref|ZP_20265458.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE131]
 gi|433121317|ref|ZP_20306983.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE157]
 gi|433184453|ref|ZP_20368695.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE85]
 gi|443618818|ref|YP_007382674.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O78]
 gi|110344519|gb|ABG70756.1| sensor protein BarA [Escherichia coli 536]
 gi|190908466|gb|EDV68055.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           F11]
 gi|300308553|gb|EFJ63073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|324015532|gb|EGB84751.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 60-1]
 gi|412964129|emb|CCK48055.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
           coli chi7122]
 gi|412970719|emb|CCJ45369.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
           coli]
 gi|430992732|gb|ELD09101.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE205]
 gi|430996718|gb|ELD12993.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE206]
 gi|431122414|gb|ELE25283.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE57]
 gi|431255075|gb|ELF48334.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE8]
 gi|431585466|gb|ELI57414.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE129]
 gi|431595332|gb|ELI65399.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE131]
 gi|431641150|gb|ELJ08894.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE157]
 gi|431704554|gb|ELJ69180.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE85]
 gi|443423326|gb|AGC88230.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O78]
          Length = 918

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|418268018|ref|ZP_12886896.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Shigella sonnei str. Moseley]
 gi|397897575|gb|EJL13981.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Shigella sonnei str. Moseley]
          Length = 920

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|215488103|ref|YP_002330534.1| hybrid sensory histidine kinase BarA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|417757042|ref|ZP_12405113.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC2B]
 gi|418998132|ref|ZP_13545722.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC1A]
 gi|419003361|ref|ZP_13550880.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC1B]
 gi|419008920|ref|ZP_13556344.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC1C]
 gi|419014706|ref|ZP_13562049.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC1D]
 gi|419019732|ref|ZP_13567036.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC1E]
 gi|419025124|ref|ZP_13572347.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC2A]
 gi|419035929|ref|ZP_13583012.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC2D]
 gi|215266175|emb|CAS10601.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli O127:H6 str. E2348/69]
 gi|377842082|gb|EHU07137.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC1A]
 gi|377842275|gb|EHU07329.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC1C]
 gi|377845853|gb|EHU10872.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC1B]
 gi|377855388|gb|EHU20259.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC1D]
 gi|377858892|gb|EHU23730.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC1E]
 gi|377862482|gb|EHU27294.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC2A]
 gi|377872420|gb|EHU37066.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC2B]
 gi|377878447|gb|EHU43034.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC2D]
          Length = 918

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|15832900|ref|NP_311673.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130693|ref|NP_417266.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. MG1655]
 gi|26249187|ref|NP_755227.1| hybrid sensory histidine kinase BarA [Escherichia coli CFT073]
 gi|74313358|ref|YP_311777.1| hybrid sensory histidine kinase BarA [Shigella sonnei Ss046]
 gi|82778168|ref|YP_404517.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae Sd197]
 gi|157159173|ref|YP_001464108.1| hybrid sensory histidine kinase BarA [Escherichia coli E24377A]
 gi|157162240|ref|YP_001459558.1| hybrid sensory histidine kinase BarA [Escherichia coli HS]
 gi|168750997|ref|ZP_02776019.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4113]
 gi|168758477|ref|ZP_02783484.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4401]
 gi|168764499|ref|ZP_02789506.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766754|ref|ZP_02791761.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777593|ref|ZP_02802600.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4196]
 gi|168778774|ref|ZP_02803781.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4076]
 gi|168788044|ref|ZP_02813051.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC869]
 gi|168802533|ref|ZP_02827540.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC508]
 gi|170018968|ref|YP_001723922.1| hybrid sensory histidine kinase BarA [Escherichia coli ATCC 8739]
 gi|170082357|ref|YP_001731677.1| hybrid sensory histidine kinase BarA [Escherichia coli str. K-12
           substr. DH10B]
 gi|170680902|ref|YP_001744948.1| hybrid sensory histidine kinase BarA [Escherichia coli SMS-3-5]
 gi|187732711|ref|YP_001881473.1| hybrid sensory histidine kinase BarA [Shigella boydii CDC 3083-94]
 gi|188492553|ref|ZP_02999823.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           53638]
 gi|191168547|ref|ZP_03030332.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B7A]
 gi|193071118|ref|ZP_03052043.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E110019]
 gi|194426308|ref|ZP_03058863.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B171]
 gi|194439650|ref|ZP_03071721.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           101-1]
 gi|195936388|ref|ZP_03081770.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805653|ref|ZP_03247990.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814172|ref|ZP_03255501.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820939|ref|ZP_03261259.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398921|ref|YP_002272251.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920235|ref|YP_002294319.1| hybrid sensory histidine kinase BarA [Escherichia coli SE11]
 gi|217327442|ref|ZP_03443525.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. TW14588]
 gi|218555337|ref|YP_002388250.1| hybrid sensory histidine kinase BarA [Escherichia coli IAI1]
 gi|218706282|ref|YP_002413801.1| hybrid sensory histidine kinase BarA [Escherichia coli UMN026]
 gi|227888324|ref|ZP_04006129.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972]
 gi|238901924|ref|YP_002927720.1| hybrid sensory histidine kinase BarA [Escherichia coli BW2952]
 gi|254794728|ref|YP_003079565.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           TW14359]
 gi|260845432|ref|YP_003223210.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O103:H2 str. 12009]
 gi|260856896|ref|YP_003230787.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
           11368]
 gi|261226085|ref|ZP_05940366.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256660|ref|ZP_05949193.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O157:H7 str. FRIK966]
 gi|291284115|ref|YP_003500933.1| signal transduction histidine-protein kinase barA [Escherichia coli
           O55:H7 str. CB9615]
 gi|293406278|ref|ZP_06650204.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412]
 gi|293412134|ref|ZP_06654857.1| signal transduction histidine-protein kinase barA [Escherichia coli
           B354]
 gi|293416033|ref|ZP_06658673.1| two-component system [Escherichia coli B185]
 gi|293449112|ref|ZP_06663533.1| two-component system [Escherichia coli B088]
 gi|298382015|ref|ZP_06991612.1| two-component system [Escherichia coli FVEC1302]
 gi|300815797|ref|ZP_07096021.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300820572|ref|ZP_07100723.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300898160|ref|ZP_07116522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|300906689|ref|ZP_07124377.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300923241|ref|ZP_07139295.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300950514|ref|ZP_07164424.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300958100|ref|ZP_07170260.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300976048|ref|ZP_07173263.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|301026289|ref|ZP_07189744.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|301027557|ref|ZP_07190890.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|301049457|ref|ZP_07196415.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|301304554|ref|ZP_07210664.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|301325726|ref|ZP_07219183.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|306812334|ref|ZP_07446532.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101]
 gi|307312785|ref|ZP_07592415.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|309786099|ref|ZP_07680728.1| signal transduction histidine-protein kinase barA [Shigella
           dysenteriae 1617]
 gi|309795252|ref|ZP_07689671.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|312972998|ref|ZP_07787171.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1827-70]
 gi|331664346|ref|ZP_08365252.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA143]
 gi|331669520|ref|ZP_08370366.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA271]
 gi|331674279|ref|ZP_08375039.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA280]
 gi|331678763|ref|ZP_08379437.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H591]
 gi|331684406|ref|ZP_08384998.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H299]
 gi|332280547|ref|ZP_08392960.1| hybrid sensory histidine kinase in two-component system response
           regulatory system with UvrY [Shigella sp. D9]
 gi|383179949|ref|YP_005457954.1| hybrid sensory histidine kinase BarA [Shigella sonnei 53G]
 gi|386281827|ref|ZP_10059486.1| signal transduction histidine-protein kinase BarA [Escherichia sp.
           4_1_40B]
 gi|386594474|ref|YP_006090874.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1]
 gi|386615508|ref|YP_006135174.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           UMNK88]
 gi|386625503|ref|YP_006145231.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli O7:K1 str. CE10]
 gi|386630521|ref|YP_006150241.1| hybrid sensory histidine kinase BarA [Escherichia coli str. 'clone
           D i2']
 gi|386635441|ref|YP_006155160.1| hybrid sensory histidine kinase BarA [Escherichia coli str. 'clone
           D i14']
 gi|386640266|ref|YP_006107064.1| sensor-regulator [Escherichia coli ABU 83972]
 gi|386706046|ref|YP_006169893.1| Signal transduction histidine-protein kinase barA [Escherichia coli
           P12b]
 gi|387508142|ref|YP_006160398.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
           RM12579]
 gi|387613408|ref|YP_006116524.1| two-component sensor kinase/response regulator [Escherichia coli
           ETEC H10407]
 gi|387622469|ref|YP_006130097.1| signal transduction histidine-protein kinase [Escherichia coli DH1]
 gi|387883966|ref|YP_006314268.1| hybrid sensory histidine kinase BarA [Escherichia coli Xuzhou21]
 gi|388478802|ref|YP_490994.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. W3110]
 gi|404376095|ref|ZP_10981271.1| signal transduction histidine-protein kinase BarA [Escherichia sp.
           1_1_43]
 gi|407470660|ref|YP_006782897.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
           2009EL-2071]
 gi|407480679|ref|YP_006777828.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
           2011C-3493]
 gi|410481245|ref|YP_006768791.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
           2009EL-2050]
 gi|415779156|ref|ZP_11489928.1| signal transduction histidine-protein kinase barA [Escherichia coli
           3431]
 gi|415786603|ref|ZP_11493659.1| signal transduction histidine-protein kinase barA [Escherichia coli
           EPECa14]
 gi|415802723|ref|ZP_11500083.1| signal transduction histidine-protein kinase barA [Escherichia coli
           E128010]
 gi|415830226|ref|ZP_11516128.1| signal transduction histidine-protein kinase barA [Escherichia coli
           OK1357]
 gi|415839704|ref|ZP_11521446.1| signal transduction histidine-protein kinase barA [Escherichia coli
           RN587/1]
 gi|415845677|ref|ZP_11525175.1| signal transduction histidine-protein kinase barA [Shigella sonnei
           53G]
 gi|415862006|ref|ZP_11535538.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 85-1]
 gi|415875153|ref|ZP_11541952.1| sensor protein GacS [Escherichia coli MS 79-10]
 gi|416314607|ref|ZP_11658842.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           1044]
 gi|416321939|ref|ZP_11663787.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           EC1212]
 gi|416327678|ref|ZP_11667598.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           1125]
 gi|416340193|ref|ZP_11675208.1| hybrid sensory histidine kinase BarA [Escherichia coli EC4100B]
 gi|416776895|ref|ZP_11874929.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           G5101]
 gi|416788355|ref|ZP_11879854.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
           493-89]
 gi|416800342|ref|ZP_11884766.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
           H 2687]
 gi|416821567|ref|ZP_11894181.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|416831986|ref|ZP_11899276.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|417123432|ref|ZP_11972342.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           97.0246]
 gi|417131759|ref|ZP_11976544.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           5.0588]
 gi|417140245|ref|ZP_11983495.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           97.0259]
 gi|417151085|ref|ZP_11990824.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           1.2264]
 gi|417158307|ref|ZP_11995931.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           96.0497]
 gi|417166538|ref|ZP_11999894.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0741]
 gi|417176363|ref|ZP_12006159.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           3.2608]
 gi|417186397|ref|ZP_12011540.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           93.0624]
 gi|417251766|ref|ZP_12043531.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           4.0967]
 gi|417262307|ref|ZP_12049781.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           2.3916]
 gi|417269489|ref|ZP_12056849.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           3.3884]
 gi|417272771|ref|ZP_12060120.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           2.4168]
 gi|417277282|ref|ZP_12064607.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           3.2303]
 gi|417280932|ref|ZP_12068232.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           3003]
 gi|417290845|ref|ZP_12078126.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           B41]
 gi|417295753|ref|ZP_12083000.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           900105 (10e)]
 gi|417309227|ref|ZP_12096066.1| Signal transduction histidine-protein kinase BarA [Escherichia coli
           PCN033]
 gi|417582274|ref|ZP_12233075.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_B2F1]
 gi|417587802|ref|ZP_12238568.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_C165-02]
 gi|417598084|ref|ZP_12248718.1| signal transduction histidine-protein kinase barA [Escherichia coli
           3030-1]
 gi|417603442|ref|ZP_12254009.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_94C]
 gi|417609411|ref|ZP_12259911.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_DG131-3]
 gi|417614242|ref|ZP_12264699.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_EH250]
 gi|417619370|ref|ZP_12269783.1| signal transduction histidine-protein kinase barA [Escherichia coli
           G58-1]
 gi|417624772|ref|ZP_12275068.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_H.1.8]
 gi|417630091|ref|ZP_12280327.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_MHI813]
 gi|417635804|ref|ZP_12286015.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_S1191]
 gi|417640573|ref|ZP_12290711.1| signal transduction histidine-protein kinase barA [Escherichia coli
           TX1999]
 gi|417668179|ref|ZP_12317721.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_O31]
 gi|417683640|ref|ZP_12332987.1| signal transduction histidine-protein kinase barA [Shigella boydii
           3594-74]
 gi|417866856|ref|ZP_12511896.1| hypothetical protein C22711_3784 [Escherichia coli O104:H4 str.
           C227-11]
 gi|417945406|ref|ZP_12588639.1| hybrid sensory histidine kinase BarA [Escherichia coli XH140A]
 gi|417975626|ref|ZP_12616424.1| hybrid sensory histidine kinase BarA [Escherichia coli XH001]
 gi|418041346|ref|ZP_12679571.1| hybrid sensory histidine kinase BarA [Escherichia coli W26]
 gi|418304341|ref|ZP_12916135.1| signal transduction histidine-protein kinase barA [Escherichia coli
           UMNF18]
 gi|418942462|ref|ZP_13495736.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H43
           str. T22]
 gi|418956840|ref|ZP_13508765.1| hybrid sensory histidine kinase BarA [Escherichia coli J53]
 gi|419046674|ref|ZP_13593609.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC3A]
 gi|419052515|ref|ZP_13599382.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC3B]
 gi|419058508|ref|ZP_13605311.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC3C]
 gi|419063999|ref|ZP_13610724.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC3D]
 gi|419070949|ref|ZP_13616564.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC3E]
 gi|419076907|ref|ZP_13622413.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC3F]
 gi|419081973|ref|ZP_13627420.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC4A]
 gi|419087811|ref|ZP_13633164.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC4B]
 gi|419093927|ref|ZP_13639209.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC4C]
 gi|419099496|ref|ZP_13644690.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC4D]
 gi|419105322|ref|ZP_13650449.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC4E]
 gi|419110787|ref|ZP_13655841.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC4F]
 gi|419116159|ref|ZP_13661174.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC5A]
 gi|419127231|ref|ZP_13672109.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC5C]
 gi|419132808|ref|ZP_13677642.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC5D]
 gi|419143712|ref|ZP_13688446.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC6A]
 gi|419149710|ref|ZP_13694362.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC6B]
 gi|419155204|ref|ZP_13699763.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC6C]
 gi|419160516|ref|ZP_13705017.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC6D]
 gi|419165567|ref|ZP_13710021.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC6E]
 gi|419171483|ref|ZP_13715368.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC7A]
 gi|419192863|ref|ZP_13736314.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC7E]
 gi|419211115|ref|ZP_13754188.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC8C]
 gi|419217048|ref|ZP_13760044.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC8D]
 gi|419222794|ref|ZP_13765711.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC8E]
 gi|419228204|ref|ZP_13771052.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC9A]
 gi|419239198|ref|ZP_13781909.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC9C]
 gi|419244715|ref|ZP_13787350.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC9D]
 gi|419250522|ref|ZP_13793095.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC9E]
 gi|419256322|ref|ZP_13798829.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC10A]
 gi|419262620|ref|ZP_13805031.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC10B]
 gi|419268739|ref|ZP_13811084.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC10C]
 gi|419274043|ref|ZP_13816334.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC10D]
 gi|419279290|ref|ZP_13821534.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC10E]
 gi|419285471|ref|ZP_13827640.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC10F]
 gi|419290804|ref|ZP_13832893.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC11A]
 gi|419296088|ref|ZP_13838131.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC11B]
 gi|419301544|ref|ZP_13843541.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC11C]
 gi|419307669|ref|ZP_13849567.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC11D]
 gi|419312684|ref|ZP_13854544.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC11E]
 gi|419318071|ref|ZP_13859872.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC12A]
 gi|419341213|ref|ZP_13882674.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC12E]
 gi|419346457|ref|ZP_13887828.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC13A]
 gi|419350919|ref|ZP_13892252.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC13B]
 gi|419356322|ref|ZP_13897575.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC13C]
 gi|419366514|ref|ZP_13907670.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC13E]
 gi|419371254|ref|ZP_13912367.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC14A]
 gi|419376752|ref|ZP_13917775.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC14B]
 gi|419382065|ref|ZP_13923011.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC14C]
 gi|419387406|ref|ZP_13928279.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC14D]
 gi|419392884|ref|ZP_13933687.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC15A]
 gi|419397864|ref|ZP_13938632.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC15B]
 gi|419403271|ref|ZP_13943991.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC15C]
 gi|419408435|ref|ZP_13949121.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC15D]
 gi|419701586|ref|ZP_14229185.1| hybrid sensory histidine kinase BarA [Escherichia coli SCI-07]
 gi|419805177|ref|ZP_14330320.1| hybrid sensory histidine kinase BarA [Escherichia coli AI27]
 gi|419811308|ref|ZP_14336184.1| hybrid sensory histidine kinase BarA [Escherichia coli O32:H37 str.
           P4]
 gi|419862064|ref|ZP_14384681.1| hybrid sensory histidine kinase BarA [Escherichia coli O103:H25
           str. CVM9340]
 gi|419867629|ref|ZP_14389944.1| hybrid sensory histidine kinase BarA [Escherichia coli O103:H2 str.
           CVM9450]
 gi|419875036|ref|ZP_14396917.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
           str. CVM9534]
 gi|419885838|ref|ZP_14406502.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
           str. CVM9545]
 gi|419901690|ref|ZP_14421005.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
           CVM9942]
 gi|419910574|ref|ZP_14429090.1| signal transduction histidine-protein kinase barA [Escherichia coli
           O26:H11 str. CVM10026]
 gi|419920079|ref|ZP_14438211.1| hybrid sensory histidine kinase BarA [Escherichia coli KD2]
 gi|419924275|ref|ZP_14442168.1| hybrid sensory histidine kinase BarA [Escherichia coli 541-15]
 gi|419927198|ref|ZP_14444936.1| hybrid sensory histidine kinase BarA [Escherichia coli 541-1]
 gi|419934569|ref|ZP_14451676.1| hybrid sensory histidine kinase BarA [Escherichia coli 576-1]
 gi|419948385|ref|ZP_14464682.1| hybrid sensory histidine kinase BarA [Escherichia coli CUMT8]
 gi|420099313|ref|ZP_14610548.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
           str. CVM9455]
 gi|420115209|ref|ZP_14624786.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
           CVM10021]
 gi|420123299|ref|ZP_14632191.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
           CVM10030]
 gi|420128790|ref|ZP_14637338.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
           CVM10224]
 gi|420134441|ref|ZP_14642548.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
           CVM9952]
 gi|420271077|ref|ZP_14773431.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA22]
 gi|420276797|ref|ZP_14779079.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA40]
 gi|420282434|ref|ZP_14784667.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW06591]
 gi|420288050|ref|ZP_14790234.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW10246]
 gi|420293793|ref|ZP_14795908.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW11039]
 gi|420299711|ref|ZP_14801757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW09109]
 gi|420305692|ref|ZP_14807682.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW10119]
 gi|420311184|ref|ZP_14813114.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1738]
 gi|420316890|ref|ZP_14818763.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1734]
 gi|420327153|ref|ZP_14828899.1| signal transduction histidine-protein kinase BarA [Shigella
           flexneri CCH060]
 gi|420354166|ref|ZP_14855256.1| signal transduction histidine-protein kinase BarA [Shigella boydii
           4444-74]
 gi|420360096|ref|ZP_14861057.1| signal transduction histidine-protein kinase BarA [Shigella sonnei
           3226-85]
 gi|420364699|ref|ZP_14865573.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Shigella sonnei 4822-66]
 gi|420381930|ref|ZP_14881370.1| signal transduction histidine-protein kinase BarA [Shigella
           dysenteriae 225-75]
 gi|420386876|ref|ZP_14886222.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EPECa12]
 gi|420392768|ref|ZP_14892016.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli EPEC C342-62]
 gi|421683801|ref|ZP_16123592.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Shigella flexneri 1485-80]
 gi|421813777|ref|ZP_16249489.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           8.0416]
 gi|421825606|ref|ZP_16260961.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FRIK920]
 gi|421832303|ref|ZP_16267587.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA7]
 gi|422331782|ref|ZP_16412797.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           4_1_47FAA]
 gi|422355752|ref|ZP_16436459.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 117-3]
 gi|422363517|ref|ZP_16444054.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 153-1]
 gi|422383134|ref|ZP_16463286.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 57-2]
 gi|422760244|ref|ZP_16814004.1| hsp90-like protein [Escherichia coli E1167]
 gi|422767711|ref|ZP_16821437.1| hsp90-like protein [Escherichia coli E1520]
 gi|422775992|ref|ZP_16829647.1| hsp90-like protein [Escherichia coli H120]
 gi|422787693|ref|ZP_16840431.1| hsp90-like protein [Escherichia coli H489]
 gi|422791913|ref|ZP_16844615.1| hsp90-like protein [Escherichia coli TA007]
 gi|422817900|ref|ZP_16866113.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M919]
 gi|422828163|ref|ZP_16876335.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           B093]
 gi|422834276|ref|ZP_16882339.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           E101]
 gi|422988887|ref|ZP_16979660.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. C227-11]
 gi|422995779|ref|ZP_16986543.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. C236-11]
 gi|423000925|ref|ZP_16991679.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 09-7901]
 gi|423004594|ref|ZP_16995340.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 04-8351]
 gi|423011096|ref|ZP_17001830.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-3677]
 gi|423020324|ref|ZP_17011033.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-4404]
 gi|423025490|ref|ZP_17016187.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-4522]
 gi|423031311|ref|ZP_17021998.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-4623]
 gi|423039136|ref|ZP_17029810.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-4632 C1]
 gi|423044256|ref|ZP_17034923.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-4632 C2]
 gi|423045985|ref|ZP_17036645.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-4632 C3]
 gi|423054523|ref|ZP_17043330.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-4632 C4]
 gi|423061498|ref|ZP_17050294.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-4632 C5]
 gi|423703876|ref|ZP_17678301.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H730]
 gi|423706938|ref|ZP_17681321.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           B799]
 gi|423726588|ref|ZP_17700593.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA31]
 gi|424078891|ref|ZP_17815871.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FDA505]
 gi|424085351|ref|ZP_17821847.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FDA517]
 gi|424091765|ref|ZP_17827699.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FRIK1996]
 gi|424098398|ref|ZP_17833700.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FRIK1985]
 gi|424104630|ref|ZP_17839392.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FRIK1990]
 gi|424111291|ref|ZP_17845527.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           93-001]
 gi|424117228|ref|ZP_17851067.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA3]
 gi|424123410|ref|ZP_17856731.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA5]
 gi|424129568|ref|ZP_17862475.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA9]
 gi|424135880|ref|ZP_17868342.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA10]
 gi|424142429|ref|ZP_17874310.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA14]
 gi|424148843|ref|ZP_17880219.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA15]
 gi|424154668|ref|ZP_17885617.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA24]
 gi|424252512|ref|ZP_17891178.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA25]
 gi|424330865|ref|ZP_17897084.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA28]
 gi|424451105|ref|ZP_17902801.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA32]
 gi|424457301|ref|ZP_17908432.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA33]
 gi|424463750|ref|ZP_17914170.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA39]
 gi|424470071|ref|ZP_17919893.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA41]
 gi|424476590|ref|ZP_17925908.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA42]
 gi|424482350|ref|ZP_17931330.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW07945]
 gi|424488517|ref|ZP_17937078.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW09098]
 gi|424495112|ref|ZP_17942802.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW09195]
 gi|424501877|ref|ZP_17948773.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4203]
 gi|424508127|ref|ZP_17954523.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4196]
 gi|424515458|ref|ZP_17960128.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW14313]
 gi|424521673|ref|ZP_17965799.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW14301]
 gi|424527558|ref|ZP_17971275.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4421]
 gi|424533713|ref|ZP_17977062.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4422]
 gi|424545864|ref|ZP_17988262.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4402]
 gi|424552105|ref|ZP_17993960.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4439]
 gi|424558282|ref|ZP_17999699.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4436]
 gi|424564626|ref|ZP_18005630.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4437]
 gi|424570764|ref|ZP_18011318.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4448]
 gi|424576920|ref|ZP_18016986.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1845]
 gi|424582748|ref|ZP_18022395.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1863]
 gi|424754069|ref|ZP_18181989.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
           CFSAN001629]
 gi|424765849|ref|ZP_18193218.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
           str. CFSAN001630]
 gi|425099421|ref|ZP_18502153.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           3.4870]
 gi|425105516|ref|ZP_18507835.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           5.2239]
 gi|425111531|ref|ZP_18513452.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           6.0172]
 gi|425116313|ref|ZP_18518104.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           8.0566]
 gi|425127452|ref|ZP_18528621.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           8.0586]
 gi|425133187|ref|ZP_18534037.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           8.2524]
 gi|425139773|ref|ZP_18540155.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           10.0833]
 gi|425145481|ref|ZP_18545479.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           10.0869]
 gi|425151595|ref|ZP_18551210.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           88.0221]
 gi|425157468|ref|ZP_18556732.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA34]
 gi|425169564|ref|ZP_18568038.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FDA507]
 gi|425181657|ref|ZP_18579353.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FRIK1999]
 gi|425187925|ref|ZP_18585200.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FRIK1997]
 gi|425194696|ref|ZP_18591465.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           NE1487]
 gi|425201169|ref|ZP_18597378.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           NE037]
 gi|425207558|ref|ZP_18603355.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FRIK2001]
 gi|425213310|ref|ZP_18608712.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA4]
 gi|425219433|ref|ZP_18614399.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA23]
 gi|425225983|ref|ZP_18620451.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA49]
 gi|425232244|ref|ZP_18626285.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA45]
 gi|425238164|ref|ZP_18631884.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TT12B]
 gi|425244383|ref|ZP_18637689.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           MA6]
 gi|425250543|ref|ZP_18643485.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           5905]
 gi|425256373|ref|ZP_18648891.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           CB7326]
 gi|425262635|ref|ZP_18654641.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC96038]
 gi|425268633|ref|ZP_18660264.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           5412]
 gi|425279157|ref|ZP_18670390.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           ARS4.2123]
 gi|425284476|ref|ZP_18675508.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW00353]
 gi|425289917|ref|ZP_18680751.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           3006]
 gi|425296067|ref|ZP_18686262.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA38]
 gi|425301624|ref|ZP_18691509.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           07798]
 gi|425306521|ref|ZP_18696216.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           N1]
 gi|425312771|ref|ZP_18701954.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1735]
 gi|425318760|ref|ZP_18707550.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1736]
 gi|425324835|ref|ZP_18713202.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1737]
 gi|425331198|ref|ZP_18719050.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1846]
 gi|425337378|ref|ZP_18724747.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1847]
 gi|425343711|ref|ZP_18730602.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1848]
 gi|425349517|ref|ZP_18735987.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1849]
 gi|425355817|ref|ZP_18741885.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1850]
 gi|425361778|ref|ZP_18747426.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1856]
 gi|425367972|ref|ZP_18753121.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1862]
 gi|425374305|ref|ZP_18758949.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1864]
 gi|425380973|ref|ZP_18764982.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1865]
 gi|425387199|ref|ZP_18770758.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1866]
 gi|425393851|ref|ZP_18776960.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1868]
 gi|425399986|ref|ZP_18782693.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1869]
 gi|425406074|ref|ZP_18788297.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1870]
 gi|425412462|ref|ZP_18794226.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           NE098]
 gi|425418788|ref|ZP_18800059.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FRIK523]
 gi|425423606|ref|ZP_18804769.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           0.1288]
 gi|425430045|ref|ZP_18810657.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           0.1304]
 gi|428948477|ref|ZP_19020757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           88.1467]
 gi|428954560|ref|ZP_19026358.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           88.1042]
 gi|428960537|ref|ZP_19031842.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           89.0511]
 gi|428967155|ref|ZP_19037874.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           90.0091]
 gi|428972950|ref|ZP_19043288.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           90.0039]
 gi|428979471|ref|ZP_19049294.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           90.2281]
 gi|428985116|ref|ZP_19054512.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           93.0055]
 gi|428991275|ref|ZP_19060266.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           93.0056]
 gi|429003405|ref|ZP_19071525.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           95.0183]
 gi|429016041|ref|ZP_19082934.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           95.0943]
 gi|429027937|ref|ZP_19093940.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           96.0427]
 gi|429034126|ref|ZP_19099651.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           96.0939]
 gi|429040204|ref|ZP_19105309.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           96.0932]
 gi|429045977|ref|ZP_19110691.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           96.0107]
 gi|429051485|ref|ZP_19116053.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           97.0003]
 gi|429056899|ref|ZP_19121212.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           97.1742]
 gi|429062387|ref|ZP_19126396.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           97.0007]
 gi|429068664|ref|ZP_19132128.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0672]
 gi|429074585|ref|ZP_19137838.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0678]
 gi|429079821|ref|ZP_19142956.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0713]
 gi|429720353|ref|ZP_19255280.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-9450]
 gi|429772253|ref|ZP_19304273.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-02030]
 gi|429777200|ref|ZP_19309174.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-02033-1]
 gi|429785925|ref|ZP_19317820.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-02092]
 gi|429791815|ref|ZP_19323669.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-02093]
 gi|429792664|ref|ZP_19324512.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-02281]
 gi|429799239|ref|ZP_19331037.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-02318]
 gi|429802856|ref|ZP_19334616.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-02913]
 gi|429812652|ref|ZP_19344335.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-03439]
 gi|429813200|ref|ZP_19344879.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-04080]
 gi|429818408|ref|ZP_19350042.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-03943]
 gi|429827831|ref|ZP_19358870.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           96.0109]
 gi|429834192|ref|ZP_19364531.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           97.0010]
 gi|429904759|ref|ZP_19370738.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-9990]
 gi|429908895|ref|ZP_19374859.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-9941]
 gi|429914769|ref|ZP_19380716.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-4984]
 gi|429919799|ref|ZP_19385730.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-5604]
 gi|429925619|ref|ZP_19391532.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-4986]
 gi|429929555|ref|ZP_19395457.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-4987]
 gi|429936094|ref|ZP_19401980.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-4988]
 gi|429941774|ref|ZP_19407648.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-5603]
 gi|429944455|ref|ZP_19410317.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-6006]
 gi|429952013|ref|ZP_19417859.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec12-0465]
 gi|429955362|ref|ZP_19421194.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec12-0466]
 gi|432354693|ref|ZP_19597962.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE2]
 gi|432366268|ref|ZP_19609387.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE10]
 gi|432377958|ref|ZP_19620945.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE12]
 gi|432382485|ref|ZP_19625425.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE15]
 gi|432388417|ref|ZP_19631299.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE16]
 gi|432393240|ref|ZP_19636069.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE21]
 gi|432403044|ref|ZP_19645793.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE26]
 gi|432412907|ref|ZP_19655567.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE39]
 gi|432418237|ref|ZP_19660833.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE44]
 gi|432427314|ref|ZP_19669805.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE181]
 gi|432432982|ref|ZP_19675407.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE187]
 gi|432437464|ref|ZP_19679851.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE188]
 gi|432457805|ref|ZP_19699985.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE201]
 gi|432461775|ref|ZP_19703917.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE204]
 gi|432477004|ref|ZP_19718996.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE208]
 gi|432482095|ref|ZP_19724047.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE210]
 gi|432496800|ref|ZP_19738595.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE214]
 gi|432505544|ref|ZP_19747265.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE220]
 gi|432515048|ref|ZP_19752269.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE224]
 gi|432518872|ref|ZP_19756054.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE228]
 gi|432524938|ref|ZP_19762063.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE230]
 gi|432527577|ref|ZP_19764663.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE233]
 gi|432539042|ref|ZP_19775940.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE235]
 gi|432565046|ref|ZP_19801620.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE51]
 gi|432569826|ref|ZP_19806335.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE53]
 gi|432577008|ref|ZP_19813462.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE56]
 gi|432593959|ref|ZP_19830272.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE60]
 gi|432603430|ref|ZP_19839672.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE66]
 gi|432608626|ref|ZP_19844809.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE67]
 gi|432612766|ref|ZP_19848924.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE72]
 gi|432622992|ref|ZP_19859015.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE76]
 gi|432632543|ref|ZP_19868465.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE80]
 gi|432642252|ref|ZP_19878080.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE83]
 gi|432647318|ref|ZP_19883104.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE86]
 gi|432652267|ref|ZP_19888018.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE87]
 gi|432656909|ref|ZP_19892610.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE93]
 gi|432661989|ref|ZP_19897627.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE111]
 gi|432667245|ref|ZP_19902822.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE116]
 gi|432671860|ref|ZP_19907386.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE119]
 gi|432675886|ref|ZP_19911341.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE142]
 gi|432681388|ref|ZP_19916755.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE143]
 gi|432686596|ref|ZP_19921889.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE156]
 gi|432687987|ref|ZP_19923264.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE161]
 gi|432700177|ref|ZP_19935328.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE169]
 gi|432719893|ref|ZP_19954859.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE9]
 gi|432733526|ref|ZP_19968352.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE45]
 gi|432738238|ref|ZP_19972993.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE42]
 gi|432746742|ref|ZP_19981405.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE43]
 gi|432751206|ref|ZP_19985803.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE29]
 gi|432760612|ref|ZP_19995103.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE46]
 gi|432766132|ref|ZP_20000554.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE48]
 gi|432771703|ref|ZP_20006024.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE50]
 gi|432775831|ref|ZP_20010097.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE54]
 gi|432784657|ref|ZP_20018835.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE63]
 gi|432793938|ref|ZP_20028020.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE78]
 gi|432795439|ref|ZP_20029499.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE79]
 gi|432806944|ref|ZP_20040859.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE91]
 gi|432810467|ref|ZP_20044345.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE101]
 gi|432816501|ref|ZP_20050263.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE115]
 gi|432828404|ref|ZP_20062022.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE135]
 gi|432835714|ref|ZP_20069248.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE136]
 gi|432845759|ref|ZP_20078493.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE141]
 gi|432853904|ref|ZP_20082449.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE144]
 gi|432863894|ref|ZP_20087706.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE146]
 gi|432870214|ref|ZP_20090671.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE147]
 gi|432876674|ref|ZP_20094562.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE154]
 gi|432887876|ref|ZP_20101804.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE158]
 gi|432906143|ref|ZP_20114871.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE194]
 gi|432914086|ref|ZP_20119626.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE190]
 gi|432935737|ref|ZP_20135005.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE184]
 gi|432939222|ref|ZP_20137372.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE183]
 gi|432948834|ref|ZP_20143757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE196]
 gi|432956436|ref|ZP_20148135.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE197]
 gi|432963124|ref|ZP_20152543.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE202]
 gi|432968838|ref|ZP_20157750.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE203]
 gi|432972902|ref|ZP_20161766.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE207]
 gi|432974894|ref|ZP_20163729.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE209]
 gi|432986505|ref|ZP_20175223.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE215]
 gi|432996449|ref|ZP_20185033.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE218]
 gi|433001020|ref|ZP_20189542.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE223]
 gi|433019858|ref|ZP_20208038.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE105]
 gi|433039749|ref|ZP_20227345.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE113]
 gi|433044310|ref|ZP_20231799.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE117]
 gi|433049168|ref|ZP_20236511.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE120]
 gi|433054422|ref|ZP_20241591.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE122]
 gi|433059228|ref|ZP_20246268.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE124]
 gi|433064191|ref|ZP_20251105.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE125]
 gi|433069068|ref|ZP_20255848.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE128]
 gi|433083657|ref|ZP_20270111.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE133]
 gi|433088427|ref|ZP_20274794.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE137]
 gi|433093139|ref|ZP_20279398.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE138]
 gi|433102330|ref|ZP_20288407.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE145]
 gi|433116632|ref|ZP_20302419.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE153]
 gi|433126302|ref|ZP_20311855.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE160]
 gi|433131304|ref|ZP_20316735.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE163]
 gi|433135965|ref|ZP_20321303.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE166]
 gi|433140370|ref|ZP_20325621.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE167]
 gi|433145346|ref|ZP_20330485.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE168]
 gi|433150289|ref|ZP_20335304.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE174]
 gi|433159805|ref|ZP_20344636.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE177]
 gi|433179609|ref|ZP_20364000.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE82]
 gi|433189530|ref|ZP_20373623.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE88]
 gi|433194811|ref|ZP_20378793.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE90]
 gi|433208866|ref|ZP_20392538.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE97]
 gi|433213650|ref|ZP_20397238.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE99]
 gi|442594308|ref|ZP_21012222.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
           O10:K5(L):H4 str. ATCC 23506]
 gi|442603658|ref|ZP_21018529.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
           Nissle 1917]
 gi|444932062|ref|ZP_21251099.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0814]
 gi|444937492|ref|ZP_21256267.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0815]
 gi|444943136|ref|ZP_21261651.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0816]
 gi|444948652|ref|ZP_21266962.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0839]
 gi|444954167|ref|ZP_21272258.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0848]
 gi|444959681|ref|ZP_21277532.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.1753]
 gi|444964836|ref|ZP_21282434.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.1775]
 gi|444970820|ref|ZP_21288181.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.1793]
 gi|444976102|ref|ZP_21293220.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.1805]
 gi|444981496|ref|ZP_21298406.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           ATCC 700728]
 gi|444986897|ref|ZP_21303677.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA11]
 gi|444992198|ref|ZP_21308840.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA19]
 gi|444997503|ref|ZP_21314000.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA13]
 gi|445003076|ref|ZP_21319465.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA2]
 gi|445008508|ref|ZP_21324747.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA47]
 gi|445013614|ref|ZP_21329721.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA48]
 gi|445019515|ref|ZP_21335478.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA8]
 gi|445024898|ref|ZP_21340720.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           7.1982]
 gi|445030320|ref|ZP_21345992.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.1781]
 gi|445035741|ref|ZP_21351271.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.1762]
 gi|445041367|ref|ZP_21356739.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA35]
 gi|445046594|ref|ZP_21361844.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           3.4880]
 gi|445052136|ref|ZP_21367176.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           95.0083]
 gi|445057868|ref|ZP_21372726.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0670]
 gi|450191892|ref|ZP_21891440.1| hybrid sensory histidine kinase BarA [Escherichia coli SEPT362]
 gi|450220996|ref|ZP_21896490.1| hybrid sensory histidine kinase BarA [Escherichia coli O08]
 gi|452969389|ref|ZP_21967616.1| sensory histidine kinase [Escherichia coli O157:H7 str. EC4009]
 gi|83288337|sp|P0AEC7.1|BARA_ECO57 RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|83288338|sp|P0AEC6.1|BARA_ECOL6 RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|83288339|sp|P0AEC5.1|BARA_ECOLI RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|26109594|gb|AAN81797.1|AE016765_199 Sensor protein barA [Escherichia coli CFT073]
 gi|216535|dbj|BAA01710.1| sensor-regulator protein [Escherichia coli]
 gi|1789149|gb|AAC75828.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. MG1655]
 gi|13363117|dbj|BAB37069.1| sensor-regulator protein barA [Escherichia coli O157:H7 str. Sakai]
 gi|73856835|gb|AAZ89542.1| sensor-regulator, activates OmpR by phophorylation [Shigella sonnei
           Ss046]
 gi|81242316|gb|ABB63026.1| sensor-regulator [Shigella dysenteriae Sd197]
 gi|85675605|dbj|BAA16571.2| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K12 substr. W3110]
 gi|157067920|gb|ABV07175.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           HS]
 gi|157081203|gb|ABV20911.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E24377A]
 gi|169753896|gb|ACA76595.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739]
 gi|169890192|gb|ACB03899.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. DH10B]
 gi|170518620|gb|ACB16798.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           SMS-3-5]
 gi|187429703|gb|ACD08977.1| sensor histidine kinase/response regulator BarA [Shigella boydii
           CDC 3083-94]
 gi|187767204|gb|EDU31048.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014881|gb|EDU53003.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4113]
 gi|188487752|gb|EDU62855.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           53638]
 gi|189003359|gb|EDU72345.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4076]
 gi|189354721|gb|EDU73140.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363700|gb|EDU82119.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365501|gb|EDU83917.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372239|gb|EDU90655.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC869]
 gi|189375500|gb|EDU93916.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC508]
 gi|190901394|gb|EDV61158.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B7A]
 gi|192955579|gb|EDV86057.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E110019]
 gi|194415616|gb|EDX31883.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B171]
 gi|194421397|gb|EDX37413.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           101-1]
 gi|208725454|gb|EDZ75055.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735449|gb|EDZ84136.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741062|gb|EDZ88744.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160321|gb|ACI37754.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209761428|gb|ACI79026.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761430|gb|ACI79027.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761432|gb|ACI79028.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761434|gb|ACI79029.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761436|gb|ACI79030.1| sensor-regulator protein barA [Escherichia coli]
 gi|209913494|dbj|BAG78568.1| two-component sensor kinase [Escherichia coli SE11]
 gi|217319809|gb|EEC28234.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. TW14588]
 gi|218362105|emb|CAQ99714.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli IAI1]
 gi|218433379|emb|CAR14281.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli UMN026]
 gi|226839460|gb|EEH71481.1| signal transduction histidine-protein kinase BarA [Escherichia sp.
           1_1_43]
 gi|227834593|gb|EEJ45059.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972]
 gi|238861442|gb|ACR63440.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli BW2952]
 gi|254594128|gb|ACT73489.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli O157:H7 str. TW14359]
 gi|257755545|dbj|BAI27047.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O26:H11 str. 11368]
 gi|257760579|dbj|BAI32076.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O103:H2 str. 12009]
 gi|260448163|gb|ACX38585.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1]
 gi|290763988|gb|ADD57949.1| Signal transduction histidine-protein kinase barA [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322202|gb|EFE61631.1| two-component system [Escherichia coli B088]
 gi|291426284|gb|EFE99316.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412]
 gi|291432222|gb|EFF05204.1| two-component system [Escherichia coli B185]
 gi|291468905|gb|EFF11396.1| signal transduction histidine-protein kinase barA [Escherichia coli
           B354]
 gi|298277155|gb|EFI18671.1| two-component system [Escherichia coli FVEC1302]
 gi|299879748|gb|EFI87959.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|300298688|gb|EFJ55073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|300315220|gb|EFJ65004.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300358135|gb|EFJ74005.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|300394900|gb|EFJ78438.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|300401524|gb|EFJ85062.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300410145|gb|EFJ93683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|300420480|gb|EFK03791.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300450174|gb|EFK13794.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300526836|gb|EFK47905.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300531726|gb|EFK52788.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300840158|gb|EFK67918.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|300847476|gb|EFK75236.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|305854372|gb|EFM54810.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101]
 gi|306907220|gb|EFN37726.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|307554758|gb|ADN47533.1| sensor-regulator [Escherichia coli ABU 83972]
 gi|308121223|gb|EFO58485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|308926210|gb|EFP71688.1| signal transduction histidine-protein kinase barA [Shigella
           dysenteriae 1617]
 gi|309703144|emb|CBJ02478.1| two-component sensor kinase/response regulator [Escherichia coli
           ETEC H10407]
 gi|310332940|gb|EFQ00154.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1827-70]
 gi|315137393|dbj|BAJ44552.1| signal transduction histidine-protein kinase [Escherichia coli DH1]
 gi|315256645|gb|EFU36613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 85-1]
 gi|315293741|gb|EFU53093.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 153-1]
 gi|315615172|gb|EFU95809.1| signal transduction histidine-protein kinase barA [Escherichia coli
           3431]
 gi|320189119|gb|EFW63778.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320202430|gb|EFW77000.1| hybrid sensory histidine kinase BarA [Escherichia coli EC4100B]
 gi|320640434|gb|EFX09973.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           G5101]
 gi|320645681|gb|EFX14666.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
           493-89]
 gi|320650981|gb|EFX19421.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
           H 2687]
 gi|320662373|gb|EFX29770.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667071|gb|EFX34034.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323154830|gb|EFZ41023.1| signal transduction histidine-protein kinase barA [Escherichia coli
           EPECa14]
 gi|323159899|gb|EFZ45869.1| signal transduction histidine-protein kinase barA [Escherichia coli
           E128010]
 gi|323167874|gb|EFZ53565.1| signal transduction histidine-protein kinase barA [Shigella sonnei
           53G]
 gi|323183325|gb|EFZ68722.1| signal transduction histidine-protein kinase barA [Escherichia coli
           OK1357]
 gi|323188798|gb|EFZ74083.1| signal transduction histidine-protein kinase barA [Escherichia coli
           RN587/1]
 gi|323935852|gb|EGB32155.1| hsp90-like protein [Escherichia coli E1520]
 gi|323946491|gb|EGB42517.1| hsp90-like protein [Escherichia coli H120]
 gi|323960696|gb|EGB56320.1| hsp90-like protein [Escherichia coli H489]
 gi|323971612|gb|EGB66843.1| hsp90-like protein [Escherichia coli TA007]
 gi|324005670|gb|EGB74889.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 57-2]
 gi|324016361|gb|EGB85580.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 117-3]
 gi|324119828|gb|EGC13707.1| hsp90-like protein [Escherichia coli E1167]
 gi|326339142|gb|EGD62957.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           1044]
 gi|326342975|gb|EGD66743.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           1125]
 gi|331058277|gb|EGI30258.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA143]
 gi|331063188|gb|EGI35101.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA271]
 gi|331068373|gb|EGI39768.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA280]
 gi|331073593|gb|EGI44914.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H591]
 gi|331078021|gb|EGI49227.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H299]
 gi|332092168|gb|EGI97246.1| signal transduction histidine-protein kinase barA [Shigella boydii
           3594-74]
 gi|332102899|gb|EGJ06245.1| hybrid sensory histidine kinase in two-component system response
           regulatory system with UvrY [Shigella sp. D9]
 gi|332344677|gb|AEE58011.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           UMNK88]
 gi|338769207|gb|EGP23988.1| Signal transduction histidine-protein kinase BarA [Escherichia coli
           PCN033]
 gi|339416439|gb|AEJ58111.1| signal transduction histidine-protein kinase barA [Escherichia coli
           UMNF18]
 gi|341920145|gb|EGT69754.1| hypothetical protein C22711_3784 [Escherichia coli O104:H4 str.
           C227-11]
 gi|342362805|gb|EGU26919.1| hybrid sensory histidine kinase BarA [Escherichia coli XH140A]
 gi|342929555|gb|EGU98277.1| sensor protein GacS [Escherichia coli MS 79-10]
 gi|344194787|gb|EGV48859.1| hybrid sensory histidine kinase BarA [Escherichia coli XH001]
 gi|345334137|gb|EGW66582.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_C165-02]
 gi|345335731|gb|EGW68168.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_B2F1]
 gi|345348964|gb|EGW81255.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_94C]
 gi|345351904|gb|EGW84156.1| signal transduction histidine-protein kinase barA [Escherichia coli
           3030-1]
 gi|345356622|gb|EGW88823.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_DG131-3]
 gi|345361276|gb|EGW93437.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_EH250]
 gi|345371662|gb|EGX03631.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_MHI813]
 gi|345374683|gb|EGX06634.1| signal transduction histidine-protein kinase barA [Escherichia coli
           G58-1]
 gi|345376217|gb|EGX08160.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_H.1.8]
 gi|345386674|gb|EGX16507.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_S1191]
 gi|345392356|gb|EGX22137.1| signal transduction histidine-protein kinase barA [Escherichia coli
           TX1999]
 gi|349739240|gb|AEQ13946.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli O7:K1 str. CE10]
 gi|354862614|gb|EHF23052.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. C236-11]
 gi|354867898|gb|EHF28320.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. C227-11]
 gi|354868294|gb|EHF28712.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 04-8351]
 gi|354873896|gb|EHF34273.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 09-7901]
 gi|354880579|gb|EHF40915.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-3677]
 gi|354888086|gb|EHF48348.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-4404]
 gi|354892321|gb|EHF52530.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-4522]
 gi|354893527|gb|EHF53730.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-4632 C1]
 gi|354896330|gb|EHF56501.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-4623]
 gi|354897707|gb|EHF57864.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-4632 C2]
 gi|354911559|gb|EHF71563.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-4632 C5]
 gi|354913508|gb|EHF73498.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-4632 C3]
 gi|354916465|gb|EHF76437.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-4632 C4]
 gi|355421420|gb|AER85617.1| hybrid sensory histidine kinase BarA [Escherichia coli str. 'clone
           D i2']
 gi|355426340|gb|AER90536.1| hybrid sensory histidine kinase BarA [Escherichia coli str. 'clone
           D i14']
 gi|359333042|dbj|BAL39489.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. MDS42]
 gi|371602811|gb|EHN91499.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           E101]
 gi|371615603|gb|EHO04002.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           B093]
 gi|373247375|gb|EHP66821.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           4_1_47FAA]
 gi|374360136|gb|AEZ41843.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
           RM12579]
 gi|375322210|gb|EHS67981.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H43
           str. T22]
 gi|377891362|gb|EHU55814.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC3B]
 gi|377892277|gb|EHU56723.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC3A]
 gi|377904102|gb|EHU68389.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC3C]
 gi|377908983|gb|EHU73192.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC3D]
 gi|377910406|gb|EHU74594.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC3E]
 gi|377920127|gb|EHU84160.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC3F]
 gi|377924944|gb|EHU88885.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC4A]
 gi|377929085|gb|EHU92985.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC4B]
 gi|377940217|gb|EHV03967.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC4D]
 gi|377941040|gb|EHV04786.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC4C]
 gi|377946502|gb|EHV10182.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC4E]
 gi|377956356|gb|EHV19906.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC4F]
 gi|377959511|gb|EHV23007.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC5A]
 gi|377972950|gb|EHV36294.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC5C]
 gi|377974233|gb|EHV37561.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC5D]
 gi|377991362|gb|EHV54513.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC6B]
 gi|377992727|gb|EHV55872.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC6A]
 gi|377995053|gb|EHV58173.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC6C]
 gi|378006136|gb|EHV69123.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC6D]
 gi|378008496|gb|EHV71455.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC6E]
 gi|378014457|gb|EHV77362.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC7A]
 gi|378037565|gb|EHW00092.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC7E]
 gi|378051660|gb|EHW13976.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC8C]
 gi|378059637|gb|EHW21836.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC8D]
 gi|378064239|gb|EHW26400.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC8E]
 gi|378072181|gb|EHW34244.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC9A]
 gi|378082392|gb|EHW44337.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC9C]
 gi|378088677|gb|EHW50527.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC9D]
 gi|378092939|gb|EHW54758.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC9E]
 gi|378099009|gb|EHW60734.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC10A]
 gi|378104582|gb|EHW66240.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC10B]
 gi|378109245|gb|EHW70856.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC10C]
 gi|378114749|gb|EHW76300.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC10D]
 gi|378126569|gb|EHW87963.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC10E]
 gi|378128578|gb|EHW89960.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC11A]
 gi|378129501|gb|EHW90872.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC10F]
 gi|378140813|gb|EHX02036.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC11B]
 gi|378147631|gb|EHX08778.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC11D]
 gi|378149143|gb|EHX10270.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC11C]
 gi|378156761|gb|EHX17807.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC11E]
 gi|378167868|gb|EHX28779.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC12A]
 gi|378184404|gb|EHX45040.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC13A]
 gi|378185762|gb|EHX46386.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC12E]
 gi|378198506|gb|EHX58976.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC13B]
 gi|378199195|gb|EHX59663.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC13C]
 gi|378211505|gb|EHX71843.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC13E]
 gi|378215391|gb|EHX75688.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC14A]
 gi|378218299|gb|EHX78571.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC14B]
 gi|378226561|gb|EHX86747.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC14C]
 gi|378230137|gb|EHX90264.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC14D]
 gi|378235852|gb|EHX95907.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC15A]
 gi|378243985|gb|EHY03931.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC15B]
 gi|378245526|gb|EHY05463.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC15C]
 gi|378252996|gb|EHY12874.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC15D]
 gi|380347048|gb|EIA35337.1| hybrid sensory histidine kinase BarA [Escherichia coli SCI-07]
 gi|383104214|gb|AFG41723.1| Signal transduction histidine-protein kinase barA [Escherichia coli
           P12b]
 gi|383475682|gb|EID67636.1| hybrid sensory histidine kinase BarA [Escherichia coli W26]
 gi|384380634|gb|EIE38500.1| hybrid sensory histidine kinase BarA [Escherichia coli J53]
 gi|384471837|gb|EIE55905.1| hybrid sensory histidine kinase BarA [Escherichia coli AI27]
 gi|385155926|gb|EIF17926.1| hybrid sensory histidine kinase BarA [Escherichia coli O32:H37 str.
           P4]
 gi|385538413|gb|EIF85275.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M919]
 gi|385706992|gb|EIG44024.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H730]
 gi|385710943|gb|EIG47915.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           B799]
 gi|386121018|gb|EIG69636.1| signal transduction histidine-protein kinase BarA [Escherichia sp.
           4_1_40B]
 gi|386146823|gb|EIG93268.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           97.0246]
 gi|386149613|gb|EIH00902.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           5.0588]
 gi|386156368|gb|EIH12713.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           97.0259]
 gi|386160579|gb|EIH22390.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           1.2264]
 gi|386167057|gb|EIH33577.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           96.0497]
 gi|386171695|gb|EIH43734.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0741]
 gi|386179055|gb|EIH56534.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           3.2608]
 gi|386182389|gb|EIH65147.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           93.0624]
 gi|386218615|gb|EII35098.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           4.0967]
 gi|386223753|gb|EII46102.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           2.3916]
 gi|386228294|gb|EII55650.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           3.3884]
 gi|386236471|gb|EII68447.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           2.4168]
 gi|386240156|gb|EII77081.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           3.2303]
 gi|386245261|gb|EII86991.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           3003]
 gi|386253167|gb|EIJ02857.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           B41]
 gi|386259197|gb|EIJ14671.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           900105 (10e)]
 gi|386797424|gb|AFJ30458.1| hybrid sensory histidine kinase BarA [Escherichia coli Xuzhou21]
 gi|388346005|gb|EIL11748.1| hybrid sensory histidine kinase BarA [Escherichia coli O103:H25
           str. CVM9340]
 gi|388346702|gb|EIL12412.1| hybrid sensory histidine kinase BarA [Escherichia coli O103:H2 str.
           CVM9450]
 gi|388347850|gb|EIL13499.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
           str. CVM9545]
 gi|388349614|gb|EIL15082.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
           str. CVM9534]
 gi|388371350|gb|EIL34831.1| signal transduction histidine-protein kinase barA [Escherichia coli
           O26:H11 str. CVM10026]
 gi|388375404|gb|EIL38422.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
           CVM9942]
 gi|388385821|gb|EIL47487.1| hybrid sensory histidine kinase BarA [Escherichia coli KD2]
 gi|388390514|gb|EIL52000.1| hybrid sensory histidine kinase BarA [Escherichia coli 541-15]
 gi|388407778|gb|EIL68141.1| hybrid sensory histidine kinase BarA [Escherichia coli 576-1]
 gi|388408036|gb|EIL68396.1| hybrid sensory histidine kinase BarA [Escherichia coli 541-1]
 gi|388421400|gb|EIL81016.1| hybrid sensory histidine kinase BarA [Escherichia coli CUMT8]
 gi|390640233|gb|EIN19697.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FRIK1996]
 gi|390642084|gb|EIN21506.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FDA517]
 gi|390642327|gb|EIN21728.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FDA505]
 gi|390659209|gb|EIN36976.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           93-001]
 gi|390660301|gb|EIN38015.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FRIK1985]
 gi|390662480|gb|EIN40076.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FRIK1990]
 gi|390676099|gb|EIN52214.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA3]
 gi|390679437|gb|EIN55337.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA5]
 gi|390682668|gb|EIN58411.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA9]
 gi|390694854|gb|EIN69410.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA10]
 gi|390699653|gb|EIN73996.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA15]
 gi|390699816|gb|EIN74156.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA14]
 gi|390713413|gb|EIN86351.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA22]
 gi|390720933|gb|EIN93634.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA25]
 gi|390722641|gb|EIN95283.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA24]
 gi|390726093|gb|EIN98570.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA28]
 gi|390740520|gb|EIO11641.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA31]
 gi|390741264|gb|EIO12342.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA32]
 gi|390744198|gb|EIO15106.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA33]
 gi|390757145|gb|EIO26634.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA40]
 gi|390765799|gb|EIO34949.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA41]
 gi|390766666|gb|EIO35781.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA39]
 gi|390767309|gb|EIO36392.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA42]
 gi|390780595|gb|EIO48295.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW06591]
 gi|390788531|gb|EIO55997.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW07945]
 gi|390788612|gb|EIO56077.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW10246]
 gi|390795407|gb|EIO62691.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW11039]
 gi|390803778|gb|EIO70768.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW09098]
 gi|390806119|gb|EIO73041.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW09109]
 gi|390814957|gb|EIO81506.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW10119]
 gi|390824618|gb|EIO90580.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4203]
 gi|390828071|gb|EIO93760.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW09195]
 gi|390829780|gb|EIO95374.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4196]
 gi|390844859|gb|EIP08556.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW14313]
 gi|390845150|gb|EIP08831.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW14301]
 gi|390849682|gb|EIP13104.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4421]
 gi|390860333|gb|EIP22655.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4422]
 gi|390869522|gb|EIP31154.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4402]
 gi|390877342|gb|EIP38276.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4439]
 gi|390882781|gb|EIP43263.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4436]
 gi|390892198|gb|EIP51786.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4437]
 gi|390894653|gb|EIP54151.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4448]
 gi|390899379|gb|EIP58627.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1738]
 gi|390907147|gb|EIP66016.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1734]
 gi|390917874|gb|EIP76290.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1863]
 gi|390919193|gb|EIP77550.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1845]
 gi|391248457|gb|EIQ07698.1| signal transduction histidine-protein kinase BarA [Shigella
           flexneri CCH060]
 gi|391276228|gb|EIQ35001.1| signal transduction histidine-protein kinase BarA [Shigella boydii
           4444-74]
 gi|391279853|gb|EIQ38534.1| signal transduction histidine-protein kinase BarA [Shigella sonnei
           3226-85]
 gi|391293057|gb|EIQ51356.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Shigella sonnei 4822-66]
 gi|391299437|gb|EIQ57401.1| signal transduction histidine-protein kinase BarA [Shigella
           dysenteriae 225-75]
 gi|391304187|gb|EIQ62005.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EPECa12]
 gi|391311367|gb|EIQ69003.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli EPEC C342-62]
 gi|394384519|gb|EJE62078.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
           CVM10224]
 gi|394407341|gb|EJE82203.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
           CVM10021]
 gi|394417135|gb|EJE90885.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
           CVM10030]
 gi|394421485|gb|EJE94952.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
           CVM9952]
 gi|394423235|gb|EJE96499.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
           str. CVM9455]
 gi|397784145|gb|EJK95001.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_O31]
 gi|404337681|gb|EJZ64132.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Shigella flexneri 1485-80]
 gi|406776407|gb|AFS55831.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
           2009EL-2050]
 gi|407052976|gb|AFS73027.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
           2011C-3493]
 gi|407066695|gb|AFS87742.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
           2009EL-2071]
 gi|408063788|gb|EKG98277.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA7]
 gi|408065699|gb|EKH00169.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FRIK920]
 gi|408068896|gb|EKH03310.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA34]
 gi|408081542|gb|EKH15549.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FDA507]
 gi|408096652|gb|EKH29587.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FRIK1999]
 gi|408103042|gb|EKH35427.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FRIK1997]
 gi|408107798|gb|EKH39868.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           NE1487]
 gi|408114265|gb|EKH45827.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           NE037]
 gi|408120244|gb|EKH51268.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FRIK2001]
 gi|408126518|gb|EKH57078.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA4]
 gi|408136590|gb|EKH66329.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA23]
 gi|408139017|gb|EKH68651.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA49]
 gi|408145320|gb|EKH74498.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA45]
 gi|408153913|gb|EKH82283.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TT12B]
 gi|408158859|gb|EKH86962.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           MA6]
 gi|408162772|gb|EKH90659.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           5905]
 gi|408172251|gb|EKH99328.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           CB7326]
 gi|408178874|gb|EKI05566.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC96038]
 gi|408182067|gb|EKI08601.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           5412]
 gi|408200143|gb|EKI25331.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           ARS4.2123]
 gi|408200665|gb|EKI25841.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW00353]
 gi|408212150|gb|EKI36683.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           07798]
 gi|408212422|gb|EKI36948.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           3006]
 gi|408216170|gb|EKI40503.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA38]
 gi|408225968|gb|EKI49628.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1735]
 gi|408227314|gb|EKI50911.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           N1]
 gi|408237171|gb|EKI60036.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1736]
 gi|408241161|gb|EKI63810.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1737]
 gi|408245765|gb|EKI68117.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1846]
 gi|408254274|gb|EKI75804.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1847]
 gi|408258055|gb|EKI79343.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1848]
 gi|408264624|gb|EKI85421.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1849]
 gi|408273088|gb|EKI93154.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1850]
 gi|408276129|gb|EKI96062.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1856]
 gi|408284895|gb|EKJ03949.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1862]
 gi|408290079|gb|EKJ08816.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1864]
 gi|408295177|gb|EKJ13514.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1865]
 gi|408306582|gb|EKJ23948.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1868]
 gi|408306929|gb|EKJ24291.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1866]
 gi|408317714|gb|EKJ33944.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1869]
 gi|408323772|gb|EKJ39733.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC1870]
 gi|408325471|gb|EKJ41346.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           NE098]
 gi|408335590|gb|EKJ50428.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FRIK523]
 gi|408342469|gb|EKJ56896.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           0.1288]
 gi|408345283|gb|EKJ59625.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           0.1304]
 gi|408548046|gb|EKK25431.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           3.4870]
 gi|408548524|gb|EKK25908.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           5.2239]
 gi|408549520|gb|EKK26880.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           6.0172]
 gi|408565841|gb|EKK41922.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           8.0566]
 gi|408567143|gb|EKK43203.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           8.0586]
 gi|408577841|gb|EKK53391.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           10.0833]
 gi|408580590|gb|EKK55994.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           8.2524]
 gi|408590684|gb|EKK65158.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           10.0869]
 gi|408595385|gb|EKK69620.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           88.0221]
 gi|408600144|gb|EKK74003.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           8.0416]
 gi|421933984|gb|EKT91762.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
           CFSAN001629]
 gi|421934999|gb|EKT92722.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
           str. CFSAN001630]
 gi|427203307|gb|EKV73612.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           88.1042]
 gi|427205489|gb|EKV75738.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           89.0511]
 gi|427207034|gb|EKV77212.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           88.1467]
 gi|427220126|gb|EKV89070.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           90.0091]
 gi|427223281|gb|EKV92040.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           90.2281]
 gi|427227217|gb|EKV95797.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           90.0039]
 gi|427240440|gb|EKW07893.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           93.0056]
 gi|427240954|gb|EKW08400.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           93.0055]
 gi|427259440|gb|EKW25478.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           95.0183]
 gi|427260266|gb|EKW26257.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           95.0943]
 gi|427278034|gb|EKW42530.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           96.0427]
 gi|427282211|gb|EKW46484.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           96.0939]
 gi|427290717|gb|EKW54175.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           96.0932]
 gi|427297718|gb|EKW60742.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           96.0107]
 gi|427299756|gb|EKW62725.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           97.0003]
 gi|427311257|gb|EKW73470.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           97.1742]
 gi|427313962|gb|EKW76033.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           97.0007]
 gi|427318442|gb|EKW80309.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0672]
 gi|427327059|gb|EKW88460.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0678]
 gi|427328119|gb|EKW89487.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0713]
 gi|429252638|gb|EKY37156.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           96.0109]
 gi|429254422|gb|EKY38839.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           97.0010]
 gi|429347455|gb|EKY84228.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-02092]
 gi|429358491|gb|EKY95160.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-02030]
 gi|429360236|gb|EKY96895.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-02033-1]
 gi|429360547|gb|EKY97205.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-02093]
 gi|429363915|gb|EKZ00540.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-02318]
 gi|429375470|gb|EKZ12004.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-02281]
 gi|429377878|gb|EKZ14393.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-03439]
 gi|429389523|gb|EKZ25943.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-02913]
 gi|429393357|gb|EKZ29752.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-03943]
 gi|429403361|gb|EKZ39645.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. 11-04080]
 gi|429405848|gb|EKZ42112.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-9990]
 gi|429408729|gb|EKZ44964.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-9450]
 gi|429413165|gb|EKZ49354.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-4987]
 gi|429415894|gb|EKZ52052.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-4984]
 gi|429419575|gb|EKZ55710.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-4986]
 gi|429431054|gb|EKZ67104.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-4988]
 gi|429435090|gb|EKZ71110.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-5603]
 gi|429437316|gb|EKZ73323.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-6006]
 gi|429442433|gb|EKZ78390.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-5604]
 gi|429446583|gb|EKZ82511.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec12-0465]
 gi|429450195|gb|EKZ86091.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec11-9941]
 gi|429455952|gb|EKZ91799.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           O104:H4 str. Ec12-0466]
 gi|430873601|gb|ELB97167.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE2]
 gi|430892539|gb|ELC15030.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE10]
 gi|430897420|gb|ELC19625.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE12]
 gi|430904999|gb|ELC26680.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE16]
 gi|430906226|gb|ELC27827.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE15]
 gi|430917503|gb|ELC38550.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE21]
 gi|430924508|gb|ELC45224.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE26]
 gi|430934367|gb|ELC54734.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE39]
 gi|430937515|gb|ELC57769.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE44]
 gi|430951164|gb|ELC70384.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE187]
 gi|430953840|gb|ELC72727.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE181]
 gi|430961637|gb|ELC79644.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE188]
 gi|430981090|gb|ELC97830.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE201]
 gi|430987748|gb|ELD04271.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE204]
 gi|431003133|gb|ELD18619.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE208]
 gi|431005479|gb|ELD20501.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE210]
 gi|431022493|gb|ELD35754.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE214]
 gi|431037060|gb|ELD48048.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE220]
 gi|431040423|gb|ELD50958.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE224]
 gi|431049269|gb|ELD59231.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE228]
 gi|431050612|gb|ELD60357.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE230]
 gi|431062041|gb|ELD71323.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE233]
 gi|431068035|gb|ELD76541.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE235]
 gi|431091673|gb|ELD97383.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE51]
 gi|431098918|gb|ELE04224.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE53]
 gi|431113794|gb|ELE17443.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE56]
 gi|431126361|gb|ELE28708.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE60]
 gi|431136705|gb|ELE38561.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE67]
 gi|431139789|gb|ELE41567.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE66]
 gi|431146949|gb|ELE48372.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE72]
 gi|431157851|gb|ELE58482.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE76]
 gi|431168626|gb|ELE68864.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE80]
 gi|431178665|gb|ELE78572.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE86]
 gi|431179784|gb|ELE79675.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE83]
 gi|431189367|gb|ELE88790.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE87]
 gi|431189712|gb|ELE89131.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE93]
 gi|431198063|gb|ELE96888.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE111]
 gi|431199385|gb|ELE98137.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE116]
 gi|431209192|gb|ELF07303.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE119]
 gi|431213061|gb|ELF10980.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE142]
 gi|431218935|gb|ELF16359.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE143]
 gi|431220570|gb|ELF17903.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE156]
 gi|431237647|gb|ELF32638.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE161]
 gi|431242422|gb|ELF36842.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE169]
 gi|431261396|gb|ELF53435.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE9]
 gi|431273292|gb|ELF64378.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE45]
 gi|431281082|gb|ELF71990.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE42]
 gi|431290682|gb|ELF81217.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE43]
 gi|431294964|gb|ELF85136.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE29]
 gi|431306852|gb|ELF95157.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE46]
 gi|431309142|gb|ELF97419.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE48]
 gi|431313584|gb|ELG01556.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE50]
 gi|431316940|gb|ELG04736.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE54]
 gi|431327814|gb|ELG15134.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE63]
 gi|431338008|gb|ELG25095.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE78]
 gi|431350505|gb|ELG37316.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE79]
 gi|431353386|gb|ELG40139.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE91]
 gi|431360818|gb|ELG47417.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE101]
 gi|431363120|gb|ELG49693.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE115]
 gi|431383258|gb|ELG67382.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE135]
 gi|431383769|gb|ELG67892.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE136]
 gi|431393935|gb|ELG77481.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE141]
 gi|431398319|gb|ELG81739.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE144]
 gi|431403604|gb|ELG86881.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE146]
 gi|431409184|gb|ELG92359.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE147]
 gi|431415354|gb|ELG97899.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE158]
 gi|431419055|gb|ELH01414.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE154]
 gi|431430534|gb|ELH12365.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE194]
 gi|431437617|gb|ELH19125.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE190]
 gi|431451629|gb|ELH32100.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE184]
 gi|431455466|gb|ELH35821.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE196]
 gi|431462217|gb|ELH42434.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE183]
 gi|431466340|gb|ELH46415.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE197]
 gi|431468548|gb|ELH48481.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE203]
 gi|431471699|gb|ELH51591.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE202]
 gi|431480379|gb|ELH60099.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE207]
 gi|431486960|gb|ELH66605.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE209]
 gi|431498281|gb|ELH77494.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE215]
 gi|431503993|gb|ELH82725.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE218]
 gi|431507530|gb|ELH85815.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE223]
 gi|431529470|gb|ELI06171.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE105]
 gi|431550147|gb|ELI24144.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE113]
 gi|431554840|gb|ELI28716.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE117]
 gi|431563480|gb|ELI36692.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE120]
 gi|431567870|gb|ELI40862.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE124]
 gi|431568627|gb|ELI41599.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE122]
 gi|431580078|gb|ELI52648.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE125]
 gi|431581506|gb|ELI53954.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE128]
 gi|431600413|gb|ELI70084.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE133]
 gi|431603443|gb|ELI72868.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE137]
 gi|431608841|gb|ELI78179.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE138]
 gi|431617909|gb|ELI86898.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE145]
 gi|431632648|gb|ELJ00935.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE153]
 gi|431643053|gb|ELJ10757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE160]
 gi|431644667|gb|ELJ12321.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE163]
 gi|431655207|gb|ELJ22247.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE166]
 gi|431658717|gb|ELJ25628.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE167]
 gi|431660504|gb|ELJ27376.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE168]
 gi|431669521|gb|ELJ35944.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE174]
 gi|431676190|gb|ELJ42313.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE177]
 gi|431699723|gb|ELJ64721.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE82]
 gi|431704357|gb|ELJ68985.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE88]
 gi|431714601|gb|ELJ78786.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE90]
 gi|431729314|gb|ELJ92949.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE97]
 gi|431733563|gb|ELJ96998.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE99]
 gi|441605694|emb|CCP97502.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
           O10:K5(L):H4 str. ATCC 23506]
 gi|441715703|emb|CCQ04506.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
           Nissle 1917]
 gi|444537109|gb|ELV17060.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0814]
 gi|444546813|gb|ELV25479.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0815]
 gi|444556641|gb|ELV34038.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0839]
 gi|444557126|gb|ELV34489.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0816]
 gi|444562213|gb|ELV39289.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0848]
 gi|444571909|gb|ELV48365.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.1753]
 gi|444575459|gb|ELV51696.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.1775]
 gi|444578422|gb|ELV54484.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.1793]
 gi|444592035|gb|ELV67296.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA11]
 gi|444592335|gb|ELV67594.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           ATCC 700728]
 gi|444593831|gb|ELV69036.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.1805]
 gi|444605240|gb|ELV79882.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA13]
 gi|444606024|gb|ELV80650.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA19]
 gi|444614594|gb|ELV88820.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA2]
 gi|444622251|gb|ELV96215.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA47]
 gi|444623223|gb|ELV97158.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA48]
 gi|444628714|gb|ELW02451.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA8]
 gi|444637277|gb|ELW10651.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           7.1982]
 gi|444640079|gb|ELW13368.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.1781]
 gi|444643837|gb|ELW16963.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.1762]
 gi|444653528|gb|ELW26249.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           PA35]
 gi|444658900|gb|ELW31337.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           3.4880]
 gi|444662435|gb|ELW34689.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           95.0083]
 gi|444669023|gb|ELW41021.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           99.0670]
 gi|449316108|gb|EMD06230.1| hybrid sensory histidine kinase BarA [Escherichia coli O08]
 gi|449319139|gb|EMD09195.1| hybrid sensory histidine kinase BarA [Escherichia coli SEPT362]
          Length = 918

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|161501988|ref|YP_001569100.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:- str. RSK2980]
 gi|160863335|gb|ABX19958.1| hypothetical protein SARI_00004 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-]
          Length = 918

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 177/605 (29%), Positives = 287/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +     ++   G +   V+P    A+ +   +    ++V V S     L      
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             I+++ +  +E          L + + R       +   LLA    +            
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +       +   +++        ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDASKIAM-------TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 738

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E E+L+  +
Sbjct: 739 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLL 781

Query: 845 SRFFP 849
            R+ P
Sbjct: 782 LRYKP 786


>gi|417691038|ref|ZP_12340257.1| signal transduction histidine-protein kinase barA [Shigella boydii
           5216-82]
 gi|332087561|gb|EGI92689.1| signal transduction histidine-protein kinase barA [Shigella boydii
           5216-82]
          Length = 918

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 184/609 (30%), Positives = 285/609 (46%), Gaps = 114/609 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F        +   E  S Q  
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQC- 533

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
                    F G +   V+P    A+ +   +    ++V V S     L        ++ 
Sbjct: 534 ---------FAGKRLAYVEPNSAAAQCTLDILSETPLEV-VYSPTFSALPPAHYDMMLLG 583

Query: 610 M-------ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
           +       + ++ E   K  S++      +  L C  Q            +      DG+
Sbjct: 584 IAVTFREPLTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEKLKQDGI 629

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
              + ++KPL  + L  +L          + +N  LP      L +   ++ VDDN  NL
Sbjct: 630 G--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVDDNPANL 680

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           K+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A ++I ++ 
Sbjct: 681 KLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACELIHQLP 737

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
           H                        P++A+TA  +    E+ L +GM  Y++KP E E+L
Sbjct: 738 H--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777

Query: 841 YREVSRFFP 849
           +  + R+ P
Sbjct: 778 HNLLLRYKP 786


>gi|200387412|ref|ZP_03214024.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604510|gb|EDZ03055.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 918

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 177/605 (29%), Positives = 287/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +     ++   G +   V+P    A+ +   +    ++V V S     L      
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             I+++ +  +E          L + + R       +   LLA    +            
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +       +   +++        ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 738

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E E+L+  +
Sbjct: 739 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLL 781

Query: 845 SRFFP 849
            R+ P
Sbjct: 782 LRYKP 786


>gi|423957740|ref|ZP_17735483.1| his Kinase A domain protein [Vibrio cholerae HE-40]
 gi|423985725|ref|ZP_17739039.1| his Kinase A domain protein [Vibrio cholerae HE-46]
 gi|408656157|gb|EKL27255.1| his Kinase A domain protein [Vibrio cholerae HE-40]
 gi|408663568|gb|EKL34437.1| his Kinase A domain protein [Vibrio cholerae HE-46]
          Length = 927

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 318/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  +P      L L  
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSVPKPQADKLPLC- 666

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-IRQFDIILMDIQMPHMDGV 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I++++                Y++      PI+A+TA  +    +  L++GMD Y
Sbjct: 725 TACKEIKQLKD---------------YQD-----TPIIAVTAHAMAGERDRLLKAGMDDY 764

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 765 LTKPIE-EHILQQVLVHWSP 783


>gi|444926362|ref|ZP_21245647.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           09BKT078844]
 gi|444538794|gb|ELV18640.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           09BKT078844]
          Length = 918

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|301645250|ref|ZP_07245202.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|331643471|ref|ZP_08344602.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H736]
 gi|432637993|ref|ZP_19873860.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE81]
 gi|432705538|ref|ZP_19940634.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE171]
 gi|301076453|gb|EFK91259.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|331036942|gb|EGI09166.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H736]
 gi|431169408|gb|ELE69627.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE81]
 gi|431241322|gb|ELF35758.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE171]
          Length = 918

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|418856256|ref|ZP_13410904.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19593]
 gi|392820606|gb|EJA76456.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19593]
          Length = 909

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 177/605 (29%), Positives = 287/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 274 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 333

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 334 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 393

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 394 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 450

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 451 DQSRLFQAFR---------------------------------------------QADAS 465

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 466 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 512

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +     ++   G +   V+P    A+ +   +    ++V V S     L      
Sbjct: 513 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 569

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             I+++ +  +E          L + + R       +   LLA    +            
Sbjct: 570 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 620

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +       +   +++        ++ VDDN  NLK+
Sbjct: 621 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 673

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 674 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 729

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E E+L+  +
Sbjct: 730 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLL 772

Query: 845 SRFFP 849
            R+ P
Sbjct: 773 LRYKP 777


>gi|383812706|ref|ZP_09968133.1| hybrid sensory histidine kinase BarA [Serratia sp. M24T3]
 gi|383298116|gb|EIC86423.1| hybrid sensory histidine kinase BarA [Serratia sp. M24T3]
          Length = 921

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 182/608 (29%), Positives = 284/608 (46%), Gaps = 108/608 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T+L  TQ DY++T + S   L+
Sbjct: 282 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQLSPTQTDYLQTIERSANNLL 341

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE + F+LR +LD+V+ L +  + DKG+EL + +   VPE +
Sbjct: 342 TIINDVLDFSKLEAGKLVLEHIPFSLREMLDEVVILLAHSAHDKGLELTINVHSNVPEFV 401

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +Q++TNL+GN+IKFTE G              +I++  EL S KN        
Sbjct: 402 LGDPMRLQQVVTNLLGNAIKFTENG--------------NIDINVELRSQKNA------- 440

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                       + L +   DTG GI    Q+++F  F Q   S
Sbjct: 441 ---------------------------QVELEMQFHDTGIGISERQQAQLFQAFRQADAS 473

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           I+R HGGTG+GL I++ LV  M G+I F S  N GSTF F           NE + Q   
Sbjct: 474 ITRRHGGTGLGLVITQRLVKEMGGDISFYSQLNRGSTFWFHVTL-----ELNESHHQ--- 525

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
            +P S++   +  K   ++  P   K  +  +  + I  EV+    Q L        I+ 
Sbjct: 526 -RPRSMAC-LRDKKLAYIEANPTATKAVKEMLSSMPI--EVIHRTSQALLPDEHYDFIVY 581

Query: 610 --MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
              IL+   + +        +   L++L       +  L +    S       GV   + 
Sbjct: 582 GMPILLNHHLND--------YEERLQQLLSQCDRLILALPSQFQISAEQLKDKGVY--AC 631

Query: 668 IMKPLRS-SMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
           + KPL S  +L   L+       + N  +  LP            ++ VDDN  NLK+  
Sbjct: 632 LNKPLSSVRLLPYLLEDPKNFIEEDNSHDQRLP----------MTVMAVDDNPANLKLIG 681

Query: 727 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
           A L+      +    G++A EL    +  D   MDIQMP +DG   +++I  + H+    
Sbjct: 682 ALLEELVETTLLCNSGEEAIELAKNVN-MDVILMDIQMPNIDGIRTSELIHLLPHHIT-- 738

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
                              PI+A+TA  +    E+ +++GM+ Y+SKP +   L   ++R
Sbjct: 739 ------------------TPIVAVTAHSLSGEREQFIKAGMEDYLSKPIDEGMLKVVLAR 780

Query: 847 F----FPP 850
           +     PP
Sbjct: 781 YHSSQIPP 788


>gi|420348672|ref|ZP_14850054.1| signal transduction histidine-protein kinase BarA [Shigella boydii
           965-58]
 gi|391267713|gb|EIQ26644.1| signal transduction histidine-protein kinase BarA [Shigella boydii
           965-58]
          Length = 918

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|260869464|ref|YP_003235866.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O111:H- str. 11128]
 gi|417200225|ref|ZP_12017462.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           4.0522]
 gi|417211723|ref|ZP_12022022.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           JB1-95]
 gi|417593117|ref|ZP_12243810.1| signal transduction histidine-protein kinase barA [Escherichia coli
           2534-86]
 gi|419198371|ref|ZP_13741698.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC8A]
 gi|419204688|ref|ZP_13747864.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC8B]
 gi|419886291|ref|ZP_14406932.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
           CVM9570]
 gi|419892903|ref|ZP_14412910.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
           CVM9574]
 gi|420092261|ref|ZP_14603975.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
           CVM9602]
 gi|420097786|ref|ZP_14609078.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
           CVM9634]
 gi|424773085|ref|ZP_18200166.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
           CFSAN001632]
 gi|257765820|dbj|BAI37315.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O111:H- str. 11128]
 gi|345335209|gb|EGW67648.1| signal transduction histidine-protein kinase barA [Escherichia coli
           2534-86]
 gi|378045569|gb|EHW07963.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC8A]
 gi|378046836|gb|EHW09209.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC8B]
 gi|386188028|gb|EIH76841.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           4.0522]
 gi|386195297|gb|EIH89533.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           JB1-95]
 gi|388365496|gb|EIL29279.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
           CVM9570]
 gi|388369064|gb|EIL32684.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
           CVM9574]
 gi|394380563|gb|EJE58305.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
           CVM9602]
 gi|394383481|gb|EJE61081.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
           CVM9634]
 gi|421937334|gb|EKT94951.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
           CFSAN001632]
          Length = 918

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|157374424|ref|YP_001473024.1| hybrid sensory histidine kinase BarA [Shewanella sediminis HAW-EB3]
 gi|157316798|gb|ABV35896.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 937

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 189/603 (31%), Positives = 282/603 (46%), Gaps = 99/603 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A  A   KS+FLA +SHE+RTP+NGV+G    L+ T L  +QQDY+ T + S   L+
Sbjct: 292 KKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHSSQQDYINTIEKSATTLL 351

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +IN++LD +K+E+GK+ LE + F LR +LDD ++L S  +++K +EL V I   VPE L
Sbjct: 352 GIINDILDFSKLEAGKMVLENMPFALREMLDDTITLLSNSAREKDIELVVDIESDVPEDL 411

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GD  R  QI+TNL+GN+IKFT++G + + + L E                         
Sbjct: 412 SGDAMRISQIMTNLVGNAIKFTDQGSVHLKLQLTE------------------------- 446

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                  S+ + ++L   V DTG GI    +  +F  F Q   S
Sbjct: 447 -----------------------SNNEQVHLRCEVTDTGIGIDDSQKEVLFQAFGQADSS 483

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR  GGTG+GL I+K LV RM G+IG +S  + GSTF FT              SQ   
Sbjct: 484 ISRRFGGTGLGLIITKRLVNRMGGQIGCISKLDKGSTFWFTLPL---------QTSQYPI 534

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS----GS 605
            Q   +  + QG   L+++PR    ++S   + RL    E+         Q+ +     +
Sbjct: 535 GQILPL-DKLQGKSVLLLEPR----ELSNNTLNRLVNHWEMKVTNAHSFEQLGNVFNQKT 589

Query: 606 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 665
              +  L+  +  +   ++S+     L+++    Q  + L     SS+ A T      + 
Sbjct: 590 STFDYALISCKGLKASGNISS----QLKEIKAHCQYLVLL----CSSNEAITHNLLPFVD 641

Query: 666 SVIMKPLRSSMLAASLQRAMGVGNKGN-IRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            V+  P+    LA  L       +  + + +  +P    R  L   ++L VDDN  NLK+
Sbjct: 642 KVLPAPIGEKALAKILIDPQPDTDSASLLEDLGIPEPIERQPL---RVLAVDDNPANLKL 698

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
               LK     V  ++ G+ A   +     FD  FMDIQMP  DG  ATK+IR+   N N
Sbjct: 699 IDTLLKELVNQVTVIDSGQGAVS-IAQERSFDLIFMDIQMPGTDGISATKLIRQDSLNRN 757

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                PI+A+TA  I    E   +SGMDGY+ KP +   L   +
Sbjct: 758 --------------------TPIIAVTAHAIAEERERIQQSGMDGYLPKPIDEAALKSVI 797

Query: 845 SRF 847
           SR+
Sbjct: 798 SRW 800


>gi|416279324|ref|ZP_11644844.1| hybrid sensory histidine kinase BarA [Shigella boydii ATCC 9905]
 gi|320182398|gb|EFW57295.1| hybrid sensory histidine kinase BarA [Shigella boydii ATCC 9905]
          Length = 918

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|312964948|ref|ZP_07779188.1| signal transduction histidine-protein kinase barA [Escherichia coli
           2362-75]
 gi|419030280|ref|ZP_13577436.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC2C]
 gi|419040966|ref|ZP_13587988.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC2E]
 gi|312290504|gb|EFR18384.1| signal transduction histidine-protein kinase barA [Escherichia coli
           2362-75]
 gi|377875657|gb|EHU40266.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC2C]
 gi|377888068|gb|EHU52540.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC2E]
          Length = 918

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|421775443|ref|ZP_16212052.1| hybrid sensory histidine kinase BarA [Escherichia coli AD30]
 gi|408459329|gb|EKJ83111.1| hybrid sensory histidine kinase BarA [Escherichia coli AD30]
          Length = 918

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 TGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|434393415|ref|YP_007128362.1| multi-sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
 gi|428265256|gb|AFZ31202.1| multi-sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
          Length = 1079

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 180/620 (29%), Positives = 292/620 (47%), Gaps = 93/620 (15%)

Query: 233 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 292
           V R  ++ +    + + K  AEAA   KSQFLA +SHEIRTPMN ++GM ++L+ T L  
Sbjct: 407 VRRTQELSQANQELEKAKTDAEAATRVKSQFLANMSHEIRTPMNAIVGMANLLLSTPLSQ 466

Query: 293 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 352
            Q++++ T + S   L+ L+N+VL+ +K+ESGKLELE  +FNLR  +++ + + + K+ +
Sbjct: 467 QQKEFLETIRTSSNVLLILLNDVLELSKIESGKLELEQRAFNLRTCVEEAVEILAFKAAE 526

Query: 353 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-EVVDSIE 411
           K +ELA  I    P  ++GD  R RQI+ NL+ NS+KFT +G + V+V   E E  + + 
Sbjct: 527 KNIELAYIIHPDTPSNIVGDVTRLRQILVNLLSNSVKFTHQGEVVVSVTARELECANKLA 586

Query: 412 VETELS-SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470
              E+  + K+T  G P+                                          
Sbjct: 587 GRYEIQFAVKDTGIGIPI------------------------------------------ 604

Query: 471 IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 530
              E    +F  F Q   SI+R +GGTG+GL+I+K L   M+G I   +  + GSTF FT
Sbjct: 605 ---ETIEHLFQAFSQGDASITREYGGTGLGLAIAKQLCEMMQGRIWVETQADQGSTFYFT 661

Query: 531 AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 590
                 +S             P+S +  F   + L+V   P   +   +  Q  GI V  
Sbjct: 662 IATTIDTSVFP----------PDSCALHFARKRMLIVVDHPTILQSLVWQAQSWGI-VPH 710

Query: 591 VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
             +    L+QI  G+ + ++++V+ ++ + D  ++           C       +L  +I
Sbjct: 711 SLEPTAALAQIQQGT-LFDVVIVDAQIHQSDALIAI----------CQDSKLPLILLTTI 759

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
           ++             S + KP+++S L + L +      + +  N +  S    HL L  
Sbjct: 760 TTQNVLPQIAQREYVSYLTKPIKTSHLYSILSQIWDQLLESDTNNSD--STFAAHLPL-- 815

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
           +IL+ +DN VN K+A   L+  G        G +  + L     +D   MD+QMP+MDG 
Sbjct: 816 RILLAEDNIVNQKIALHILQSLGYHADVASNGLEVLDTLR-RQNYDVVLMDVQMPKMDGL 874

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            AT   R++   F   IR                  I+AMTA+ +Q   EECL +GM+ Y
Sbjct: 875 TAT---RQIVQEFGAEIRPR----------------IIAMTANAMQEDKEECLAAGMNDY 915

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           +SKP + E+L + + +   P
Sbjct: 916 ISKPIQVEELTQALLKTPKP 935


>gi|428997148|ref|ZP_19065746.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           94.0618]
 gi|427244665|gb|EKW11978.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           94.0618]
          Length = 918

 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|374334750|ref|YP_005091437.1| hybrid sensory histidine kinase BarA [Oceanimonas sp. GK1]
 gi|372984437|gb|AEY00687.1| hybrid sensory histidine kinase BarA [Oceanimonas sp. GK1]
          Length = 898

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 182/600 (30%), Positives = 291/600 (48%), Gaps = 101/600 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   K++FLA +SHE+RTP+NGV+G    L  T+L   Q DY++T + S + L+
Sbjct: 280 KKRAQEAARVKTEFLANMSHELRTPLNGVIGFARQLQKTKLTANQLDYLKTIEKSAQNLL 339

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +IN++LD +K+E+GKL++E + F+LR  L +V++L +  + DKG+EL++ +   V ++L
Sbjct: 340 GIINDILDFSKLEAGKLKMEQIPFSLRDTLQEVMTLLAPSAHDKGLELSLRVDAAVHDSL 399

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +Q++ NL+GN+IKFTE+G++ V V                             
Sbjct: 400 VGDPLRLQQVLNNLVGNAIKFTEQGNVDVRV----------------------------- 430

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                       +   +  P +S       L + V+DTG GI    + ++F  F Q   S
Sbjct: 431 ------------DARPAGQPERS------GLCIHVQDTGIGISDSQRRQLFQAFNQADSS 472

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR +GGTG+GL I++ LV +M G+I   S P  GS F+FT      +    E       
Sbjct: 473 ISRRYGGTGLGLVITQKLVHQMAGDIELYSEPGSGSVFSFTLELDKAALPLAE------- 525

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV--EVVSDQLQCLSQIASGSKI 607
             P  + +E  G   L  +      + +   ++  G+QV  E   +Q   ++ +  G   
Sbjct: 526 --PLPL-AELAGKTVLYQEEDGFSRRATSALLREWGMQVLYEPSPEQPVDVALLGFGPHA 582

Query: 608 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667
           +    VEQE+                K    F +K  +L +S   + ++ S   V     
Sbjct: 583 LPS-QVEQEL----------------KRQLAFDNKTIILLSSTDPTLSD-SLLAVGAAHC 624

Query: 668 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAA 727
           + KP     LA +L       ++  +    LP  + R  +   ++L VDDN  NLK+ +A
Sbjct: 625 LSKPAHYQKLAQALTEQRRPVDE-PVAPIALPPPASRQPM---RVLAVDDNPANLKLISA 680

Query: 728 GLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787
            L    + V     G++A   L   H++D  FMDIQMP +DG +AT+ IR          
Sbjct: 681 MLAEQVSQVDTGRNGREALN-LATTHRYDIIFMDIQMPVLDGIQATQEIR---------- 729

Query: 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847
           R+G +         N H PI+A+TA  I    +  LR GMD Y++KP +   L R ++ F
Sbjct: 730 RQGGL---------NVHTPIVAVTAHAIAGERDRLLRQGMDDYLAKPIDEAILARIINHF 780


>gi|417821767|ref|ZP_12468381.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HE39]
 gi|340039398|gb|EGR00373.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           HE39]
          Length = 916

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 318/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L  +   I  + ++    H      I QAT +    +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 317

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 318 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 509

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +N+  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 510 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 558

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           +      +    + SK  N  LV  E+W +     T        +  G  S    LA+ +
Sbjct: 559 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 610

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  +P      L L  
Sbjct: 611 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSVPKPQADKLPLC- 655

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E      QFD   MDIQMP MDG 
Sbjct: 656 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-IRQFDIILMDIQMPHMDGV 713

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I++++                Y++      PI+A+TA  +    +  L++GMD Y
Sbjct: 714 TACKEIKQLKD---------------YQD-----TPIIAVTAHAMAGERDRLLKAGMDDY 753

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 754 LTKPIE-EHILQQVLVHWSP 772


>gi|442596326|ref|ZP_21014139.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
           O5:K4(L):H4 str. ATCC 23502]
 gi|441655338|emb|CCQ00052.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
           O5:K4(L):H4 str. ATCC 23502]
          Length = 918

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|433199479|ref|ZP_20383371.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE94]
 gi|431719601|gb|ELJ83655.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE94]
          Length = 918

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|387608423|ref|YP_006097279.1| two-component sensor kinase/response regulator [Escherichia coli
           042]
 gi|284922723|emb|CBG35811.1| two-component sensor kinase/response regulator [Escherichia coli
           042]
          Length = 918

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|260771270|ref|ZP_05880197.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972]
 gi|260613867|gb|EEX39059.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972]
          Length = 933

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 194/682 (28%), Positives = 323/682 (47%), Gaps = 123/682 (18%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L ++   I  + ++    H      I QAT +    +E
Sbjct: 208 NMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 267

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 268 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 327

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  +  L++V++L +  + +KG+E+
Sbjct: 328 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEI 387

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + +  ++P  L+GDP R +Q++TNL+GNSIKFTE+G+I ++V +  +  D +E++    
Sbjct: 388 TLKVDPKIPAGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQRDDVVELQ---- 443

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                                         V DTG GI    Q+
Sbjct: 444 --------------------------------------------FMVRDTGIGISERQQA 459

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT       
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRL---- 515

Query: 538 STSNEHNSQQ-MNN--QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV---- 590
                H ++  M++   P ++S +    + L+V+P    A + +  + + G+ V      
Sbjct: 516 -----HITEMPMSDWLDPKALSQK----QLLLVEPNMQAASIVQQLLVQAGLTVTYRSAM 566

Query: 591 --VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 648
              SD    +    + SK  ++ LVEQ V                +   G  S + +   
Sbjct: 567 PEESDHFDYVLLNLAPSKETDVELVEQWV----------------QRSIGISSHVIIGTP 610

Query: 649 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL 708
           S   + A+       +   I KPL    L  +L     + ++  + +    ++ ++   +
Sbjct: 611 STELALADLLMKQYPV-QCITKPLSRKKLLQTL-----IAHQPVVIDAPAQAVPVKQDKM 664

Query: 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768
              ++ VDDN  NLK+  A L+    AVV    G+ A E     H FD   MDIQMP MD
Sbjct: 665 PLTVMAVDDNPANLKLITALLQERVEAVVSCTNGQDAIEQARQRH-FDIILMDIQMPHMD 723

Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
           G  A K I+++E N N                     P++A+TA  +    +  L++GMD
Sbjct: 724 GVTACKAIKQLELNQNT--------------------PVIAVTAHAMSGERDRLLKAGMD 763

Query: 829 GYVSKPFEAEQLYREVSRFFPP 850
            Y++KP E E + ++V   + P
Sbjct: 764 DYLTKPIE-EHILQQVLVHWSP 784


>gi|445495732|ref|ZP_21462776.1| putative sensor/response regulatory hybrid protein
           [Janthinobacterium sp. HH01]
 gi|444791893|gb|ELX13440.1| putative sensor/response regulatory hybrid protein
           [Janthinobacterium sp. HH01]
          Length = 771

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 190/607 (31%), Positives = 292/607 (48%), Gaps = 105/607 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           + +AE A   KSQFLAT+SHEIRTPMNG+LGM  +L  T L   Q+DYV    A+  +L+
Sbjct: 254 RNRAETATRVKSQFLATMSHEIRTPMNGILGMQHLLRLTALSAQQRDYVDKTYAAAHSLL 313

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            ++N++LD +KVE+GKL LE V FNL  +L ++  +     Q K VE+   +   +P  +
Sbjct: 314 GILNDILDFSKVETGKLVLEQVPFNLEQMLRNLALILGTSVQGKPVEVLFDLDPALPPDV 373

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GD  R  Q++ NL GN+IKFTE+G + V V L                           
Sbjct: 374 VGDALRLNQVLVNLAGNAIKFTERGSVVVGVEL--------------------------- 406

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                + + A  + L  SV DTG GI  E Q  IF  F Q   S
Sbjct: 407 ---------------------QYADARQVRLHFSVRDTGIGIDPEQQGSIFDSFTQAESS 445

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
            +R  GGTG+GL+IS+ LV  M GE+   S P +GSTF+F   +G     S +   Q   
Sbjct: 446 TTRRFGGTGLGLAISQRLVRLMGGELRVDSTPGVGSTFSFAVAYGR----SAQAQGQARA 501

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 609
           + P         ++AL+V       ++ +  I  +G Q +  +D      Q+A      +
Sbjct: 502 DLP---------VRALLVSAAEQSRQLLQAMIAGMGGQADSAADTASAAQQLARPGTAYD 552

Query: 610 MILVEQ-EVWEKDTSVSTLFVNNLR-KLGCGFQSKLFLLANSISSSRA---NTSTDGVSI 664
           ++L++  + W+         +  LR + G  F +    LAN + SS A           +
Sbjct: 553 LVLLDGVDDWDA--------MLRLRGRTGAAFVA----LAN-VESSHALHQRVREQAGVL 599

Query: 665 PSVIMKPLRSSMLAASLQRAMGVG----NKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 720
             V+MKPL  +ML  +L R +  G               +++    L G ++L+V+DN +
Sbjct: 600 DLVLMKPLTPAMLYEAL-RGIVPGQGAGASLAAAAPAAQAVAPVRRLAGLRLLLVEDNPL 658

Query: 721 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREME 780
           N +VA+A L+  GA V     G++  + +     +DA  MD+QMP MDG EAT+++R   
Sbjct: 659 NQQVASALLQLEGAQVDVAGNGREGVDRVASGPPYDAVLMDMQMPVMDGNEATRLLRAQG 718

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
           H                       +PILA+TA+V++A  +EC  +G+D ++SKP E E +
Sbjct: 719 HT---------------------SLPILALTANVLEAERDECRAAGVDDFISKPIEFEDM 757

Query: 841 YREVSRF 847
              V+++
Sbjct: 758 VAMVAKY 764


>gi|415818471|ref|ZP_11508193.1| signal transduction histidine-protein kinase barA [Escherichia coli
           OK1180]
 gi|323180217|gb|EFZ65769.1| signal transduction histidine-protein kinase barA [Escherichia coli
           OK1180]
          Length = 918

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|392308552|ref|ZP_10271086.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas citrea NCIMB
            1889]
          Length = 1349

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 180/615 (29%), Positives = 292/615 (47%), Gaps = 90/615 (14%)

Query: 221  IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
            +A +VG I   T  +     E    ++  K++A+    AK +FLA +SHEIRTPMN ++G
Sbjct: 573  VAGIVGLILDVTERK-----EMEQQLIIAKEQADQMSTAKGEFLANMSHEIRTPMNAIIG 627

Query: 281  MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
            M  + + T+LD  Q  YV     + K L+ +IN++LD +K+ESGK+ +E+V+F L  + D
Sbjct: 628  MSHLALKTDLDNQQLGYVTKIDQAAKNLLGIINDILDFSKIESGKMTVESVNFLLDEVTD 687

Query: 341  DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
            +V ++ + K+Q+K +EL + +S  VP +LIGDP R  QI+ NL GN+IKFTE G I V  
Sbjct: 688  NVATVNAVKAQEKNLELLLDVSPDVPISLIGDPLRLSQILINLCGNAIKFTETGEIVV-- 745

Query: 401  YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 460
                                                G KT  Q+          +D + L
Sbjct: 746  ------------------------------------GVKTLEQN----------SDNVTL 759

Query: 461  IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520
              SV+D+G G+  E Q+++F  F Q   SI+R +GGTG+GLSISK LV  M G+IG  S 
Sbjct: 760  RFSVKDSGIGLSKEQQAKLFEAFSQADGSITRKYGGTGLGLSISKNLVELMGGKIGVNSE 819

Query: 521  PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 580
               GS F FT   G   +        + N          +  +ALVVD       +    
Sbjct: 820  VGKGSEFFFTVKCGLQEAKIRNFLCPEAN---------LKEKQALVVDDNNSARAIMNNL 870

Query: 581  IQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640
            ++ +G+ V  VS   + ++++       ++I ++   W          + ++R +    Q
Sbjct: 871  LKTMGLAVNSVSSGREAINELEVAK--YDLIFMD---WNMPGMNGIDTIKHIRNMNLPEQ 925

Query: 641  SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 700
             K+ L+         N     + +  +I+KP+ +S+L  S+    G+    +     +  
Sbjct: 926  PKMILVTAYGKEVGMNKEISDL-LDGLIIKPVNASILLDSIMECYGLQRPSDHEAAPVSD 984

Query: 701  MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
            +        R +L+V+DN  N +VA   L+     +     G +A  ++     FD   M
Sbjct: 985  IESTGFAQQR-VLLVEDNITNQEVAYEMLQSVNLNITIANHGLEAVNMV-KEQDFDLVLM 1042

Query: 761  DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
            D+QMP MDG  AT+ IR+ +                    S   +PI+AMTA+ +Q   +
Sbjct: 1043 DMQMPVMDGLTATREIRKSK--------------------SFTALPIIAMTANAMQEDVD 1082

Query: 821  ECLRSGMDGYVSKPF 835
            +C  +GM+G+++KP 
Sbjct: 1083 KCTDAGMNGHIAKPI 1097


>gi|414577554|ref|ZP_11434729.1| signal transduction histidine-protein kinase BarA [Shigella sonnei
           3233-85]
 gi|391283087|gb|EIQ41710.1| signal transduction histidine-protein kinase BarA [Shigella sonnei
           3233-85]
          Length = 908

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 273 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 332

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 333 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 392

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 393 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 449

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 450 DQSRLFQAFR---------------------------------------------QADAS 464

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 465 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 524

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 525 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 581

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 582 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 613

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 614 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 664

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 665 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 721

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 722 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 761

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 762 IEEERLHNLLLRYKP 776


>gi|419187571|ref|ZP_13731081.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC7D]
 gi|419324368|ref|ZP_13866058.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC12B]
 gi|419335858|ref|ZP_13877380.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC12D]
 gi|378027489|gb|EHV90118.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC7D]
 gi|378163583|gb|EHX24535.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC12B]
 gi|378180734|gb|EHX41415.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC12D]
          Length = 895

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 260 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 319

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 320 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 379

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 380 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 436

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 437 DQSRLFQAFR---------------------------------------------QADAS 451

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 452 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 511

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 512 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 568

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 569 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 600

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 601 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 651

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 652 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 708

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 709 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 748

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 749 IEEERLHNLLLRYKP 763


>gi|419137930|ref|ZP_13682721.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC5E]
 gi|377982350|gb|EHV45602.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC5E]
          Length = 762

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 127 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 186

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 187 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 246

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 247 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 303

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 304 DQSRLFQAFR---------------------------------------------QADAS 318

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 319 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 378

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 379 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 435

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 436 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 467

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 468 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 518

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 519 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 575

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 576 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 615

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 616 IEEERLHNLLLRYKP 630


>gi|386288898|ref|ZP_10066037.1| signal transduction histidine kinase [gamma proteobacterium BDW918]
 gi|385277902|gb|EIF41875.1| signal transduction histidine kinase [gamma proteobacterium BDW918]
          Length = 1255

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 182/619 (29%), Positives = 298/619 (48%), Gaps = 110/619 (17%)

Query: 250  KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
            K++AEAA  AKS+FLA +SHEIRTPMNGVLGML++L  T L+  Q   +  A++S ++L+
Sbjct: 573  KEQAEAAVRAKSEFLAVMSHEIRTPMNGVLGMLNLLESTPLNQDQGHKIHIAKSSARSLL 632

Query: 310  SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            SLI+++LD +KV++GKL+LE + F+LR  LD+     +  + DKG+EL V +S     ++
Sbjct: 633  SLIDDILDFSKVDAGKLQLETIEFDLRQALDEFAESLAHYAHDKGLELVVDLSAVPLGSV 692

Query: 370  IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            +GDP R RQI+TNL+ N+IKFTE G + +   L EE                        
Sbjct: 693  VGDPSRLRQIVTNLLANAIKFTEHGSVILRASLREE------------------------ 728

Query: 430  DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
               H                        + L  ++ D+G G+  E   ++F+PF Q+  S
Sbjct: 729  --SHG-----------------------LTLSCAIIDSGIGVAEEDLGKLFSPFSQIDSS 763

Query: 490  ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
             +R +GG+G+GLSI   L   M G I   S  + GSTF+FT V    S+T  E       
Sbjct: 764  TTRKYGGSGLGLSICSKLCELMGGSILATSSVDEGSTFSFT-VHLKPSTTLPE------- 815

Query: 550  NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII- 608
                  + E  G   +++D         R  ++  G  V    D    +  +A+ S ++ 
Sbjct: 816  -----PAPELNGRYVVIIDGNVSFRHSCRRQLESWGATVIDGDDAQTAMRSLATQSTLLK 870

Query: 609  --NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
              +++L+ ++V + + +        LR+      + + +L  +    +     D   I +
Sbjct: 871  RCDLVLLNEQVADGNANA---MAAQLRQHPAFQHAAIAVLGTNF--EKLAQPLDEQYINA 925

Query: 667  VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH--------------LLLGRKI 712
              +KPL S  L A    A+ + N   +R+   P M  +                L+G KI
Sbjct: 926  RYLKPLASKDLIA----ALILTNHDKLRHQ--PPMLTKQDATSLSSTNSHTAPALIGHKI 979

Query: 713  LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM---PPHQFDACFMDIQMPEMDG 769
            L+ +DN +N +V+   L   G +V     G  A ++L      + +    MD QMP+MDG
Sbjct: 980  LLAEDNPINQEVSRCMLDELGISVDIANDGIMALQMLCNSDSQNPYSLILMDCQMPKMDG 1039

Query: 770  FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
            +  ++           RIR G    ++Y       +PI+A+TA+ +    E+C+ +GM+ 
Sbjct: 1040 YVVSR-----------RIRNGGAG-DSYR-----EIPIIALTANAMSGDKEKCINAGMND 1082

Query: 830  YVSKPFEAEQLYREVSRFF 848
            Y+SKP EA  L  +++++ 
Sbjct: 1083 YLSKPMEAADLREKLTQWL 1101


>gi|146306761|ref|YP_001187226.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145574962|gb|ABP84494.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 916

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 187/609 (30%), Positives = 284/609 (46%), Gaps = 108/609 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           +K+A  A   KS+FLA +SHEIRTP+NG+LG  ++L  +EL   QQDY+ T + S  +L+
Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLATIEKSADSLL 333

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +INEVLD +K+E+GKL LE++ FNLR +L D L++ +  + +K +EL   I    P  L
Sbjct: 334 GIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELISLIYRDTPLAL 393

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
            GDP R +Q++TNL+ N+IKFT +G I +   + +E VDS +                  
Sbjct: 394 RGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESVDSAQ------------------ 435

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                         L +SV DTG G+  E    +F  F Q   S
Sbjct: 436 ------------------------------LRISVMDTGIGLSDEDLRALFQAFSQADNS 465

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           +SR  GGTG+GL ISK L+ +M GEIG  S P  GS F  +         +++     + 
Sbjct: 466 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLSLPKARDDADD-----LP 520

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV---VSDQLQCLSQIASGSK 606
             P       QG +  V++   +  +   + ++  G++VE    +   L+ +SQ     +
Sbjct: 521 RAP------LQGRRVAVLESHELARQALTHQLEDCGLEVESFAGLQPLLEAVSQQHQHER 574

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS-----SSRANTSTDG 661
            +++ ++     +         + +L +LGC    K  +L  +        S  +  T  
Sbjct: 575 PLSLAVLGITAEQLPPEALAQHIWDLDRLGC----KTLVLCPTTELGLFHESLPDAYTQL 630

Query: 662 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK--ILIVDDNN 719
            + P    K  ++ +     QRA G            PS  +     GR+  IL VDDN 
Sbjct: 631 QAKPPCTRKLHKALVEMVCPQRAPGE-----------PSAPVN----GRRPQILCVDDNP 675

Query: 720 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQMPEMDGFEATKIIRE 778
            NL +    L   GA V  V+ G  A E +   H  FD  FMD+QMP MDG +AT+ IR+
Sbjct: 676 ANLLLVQTLLDDLGAQVTAVDSGFAAIEAVQ--HGSFDLVFMDVQMPGMDGRQATEAIRQ 733

Query: 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838
            E         GE    A         PI+A+TA  +       L+SGMD Y++KP    
Sbjct: 734 WE---------GEQGRSA--------TPIIALTAHALANEKRTLLQSGMDDYLTKPINER 776

Query: 839 QLYREVSRF 847
           QL + + ++
Sbjct: 777 QLCQVILKW 785


>gi|193065094|ref|ZP_03046168.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E22]
 gi|192927225|gb|EDV81845.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E22]
          Length = 918

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 284/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E  L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKENLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|416275346|ref|ZP_11643934.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae CDC
           74-1112]
 gi|320173230|gb|EFW48440.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae CDC
           74-1112]
          Length = 918

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|418790674|ref|ZP_13346446.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19447]
 gi|418795146|ref|ZP_13350855.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19449]
 gi|418797262|ref|ZP_13352948.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19567]
 gi|392757504|gb|EJA14391.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19447]
 gi|392759288|gb|EJA16141.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19449]
 gi|392768701|gb|EJA25447.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19567]
          Length = 918

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 176/605 (29%), Positives = 287/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +     ++   G +   ++P    A+ +   +    ++V V S     L      
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYIEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             I+++ +  +E          L + + R       +   LLA    +            
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +       +   +++        ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 738

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E E+L+  +
Sbjct: 739 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLL 781

Query: 845 SRFFP 849
            R+ P
Sbjct: 782 LRYKP 786


>gi|424539769|ref|ZP_17982713.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4013]
 gi|425121070|ref|ZP_18522757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           8.0569]
 gi|425273949|ref|ZP_18665354.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW15901]
 gi|390864407|gb|EIP26515.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           EC4013]
 gi|408192009|gb|EKI17597.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TW15901]
 gi|408566832|gb|EKK42893.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           8.0569]
          Length = 909

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 274 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 333

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 334 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 393

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 394 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 450

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 451 DQSRLFQAFR---------------------------------------------QADAS 465

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 466 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 525

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 526 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 582

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 583 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 614

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 615 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 665

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 666 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 722

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 723 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 762

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 763 IEEERLHNLLLRYKP 777


>gi|419330323|ref|ZP_13871923.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC12C]
 gi|378168798|gb|EHX29701.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           DEC12C]
          Length = 720

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 85  KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 144

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 145 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 204

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 205 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 261

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 262 DQSRLFQAFR---------------------------------------------QADAS 276

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 277 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 336

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 337 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 393

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 394 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 425

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 426 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 476

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 477 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 533

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 534 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 573

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 574 IEEERLHNLLLRYKP 588


>gi|452748618|ref|ZP_21948396.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri
           NF13]
 gi|452007524|gb|EMD99778.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri
           NF13]
          Length = 915

 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 181/611 (29%), Positives = 295/611 (48%), Gaps = 93/611 (15%)

Query: 234 NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT 293
           +RI  ++E+ +   E  ++A + + AKS+FLA +SHEIRTP+NGVLGML +L +T LD +
Sbjct: 383 DRINLLKEEGYRSREAAERAASENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPLDRS 442

Query: 294 QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDK 353
           QQ Y+ T  +SG +L+++IN++LD A++ SGKL LE + F+L  ++ + + LF+ ++ +K
Sbjct: 443 QQFYLDTISSSGNSLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEK 502

Query: 354 GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 413
            + L V +   VP  + GDP R +QI+ NL+ N++KFTE GH+ + V             
Sbjct: 503 QLSLHVGLEPGVPRRIRGDPTRLKQILMNLLSNALKFTEHGHVLLEV------------- 549

Query: 414 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 473
               S + T                    Q+G+             L+  V D+G G+  
Sbjct: 550 ----SCRQT--------------------QEGTR-----------RLVFCVSDSGIGMRQ 574

Query: 474 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533
           E  +++F  F Q   S +R +GG+G+GL+ISK LV  M G I   S P  GS F F    
Sbjct: 575 EVLAQLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSAPGRGSRFCFEIPL 634

Query: 534 GNGSSTSNEHNSQQMNNQPNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 592
            + S   +  N   +  +P  ++S+  +G++AL             + ++R G++ E   
Sbjct: 635 QSASDVEDPLN-HLLGGRPALLASQDTEGLEAL------------SHLLRRWGMRTERCQ 681

Query: 593 DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 652
              +CL    S      ++++    W    +    ++  LR      Q  L L +     
Sbjct: 682 TP-ECLPDYLSDFTAPPLMVLLAP-WPGSPAQ---WLERLRPHLEANQRVLMLYSPVHEP 736

Query: 653 SRANTSTDGVSIPSVIMK-PLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK 711
              +     +S+   +   PLR ++ A             ++   E P            
Sbjct: 737 PPPSPGLRLISLALPLQSTPLREALQALYTPAPQQASEATDVAPAEQPPRE-------PC 789

Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQMPEMDGF 770
           IL+ +DN VN  V    LK+ G AV   + G++A +L    P       MD +MPE+DGF
Sbjct: 790 ILVAEDNPVNQMVVRGLLKKRGYAVQLADNGRQAVDLYRRDPEAVQLILMDCEMPELDGF 849

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
           EA++ IR++E          E+ ++A        VPI+A+TA V+    +  L SGMD +
Sbjct: 850 EASRRIRKLE---------AELELQA--------VPIIAVTAHVLAEHRQRGLESGMDEF 892

Query: 831 VSKPFEAEQLY 841
           + KP E+ QLY
Sbjct: 893 IGKPLESRQLY 903


>gi|437848493|ref|ZP_20847168.1| hybrid sensory histidine kinase BarA, partial [Salmonella enterica
           subsp. enterica serovar Enteritidis str. 6.0562-1]
 gi|435338708|gb|ELP07890.1| hybrid sensory histidine kinase BarA, partial [Salmonella enterica
           subsp. enterica serovar Enteritidis str. 6.0562-1]
          Length = 684

 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 180/616 (29%), Positives = 291/616 (47%), Gaps = 128/616 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 49  KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 108

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 109 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 168

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 169 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 225

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 226 DQSRLFQAFR---------------------------------------------QADAS 240

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         V  +G ST+  
Sbjct: 241 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHIHLDLNPNVIIDGPSTACL 300

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              +    +PN+ +++            +V  P      ++ Y I  L + V   E ++ 
Sbjct: 301 AGKRLAYIEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTM 360

Query: 594 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 653
           Q + L++ AS +  +                       L  L C  Q         I++ 
Sbjct: 361 QHERLAKAASMTDFL-----------------------LLALPCHAQ---------INAE 388

Query: 654 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 713
           +           + ++KPL S+ L  +L     + +       +   +++        ++
Sbjct: 389 KLKQG----GAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVM 437

Query: 714 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
            VDDN  NLK+  A L+     V   + G +A +      QFD   MDIQMP+MDG  A 
Sbjct: 438 AVDDNPANLKLIGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRAC 496

Query: 774 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
           ++I ++ H                        P++A+TA  +    E+ L +GM+ Y++K
Sbjct: 497 ELIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAK 536

Query: 834 PFEAEQLYREVSRFFP 849
           P E E+L+  + R+ P
Sbjct: 537 PIEEEKLHNLLLRYKP 552


>gi|432802971|ref|ZP_20036927.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE84]
 gi|431347500|gb|ELG34388.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE84]
          Length = 918

 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 287/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S+PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++                 Y+       P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQL----------------PYQQ----QTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|422959542|ref|ZP_16971177.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H494]
 gi|371595093|gb|EHN83946.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H494]
          Length = 918

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELAPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|300920361|ref|ZP_07136798.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
 gi|432535150|ref|ZP_19772117.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE234]
 gi|300412624|gb|EFJ95934.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
 gi|431059004|gb|ELD68380.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE234]
          Length = 918

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMGDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|188534845|ref|YP_001908642.1| hybrid sensory histidine kinase BarA [Erwinia tasmaniensis Et1/99]
 gi|188029887|emb|CAO97771.1| Signal transduction histidine-protein kinase BarA [Erwinia
           tasmaniensis Et1/99]
          Length = 909

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 184/626 (29%), Positives = 295/626 (47%), Gaps = 139/626 (22%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           K++A+ A   KS+FLA +SHE+RTP+NGV+G     + T L+ TQ+DY+ T + S   L+
Sbjct: 283 KRRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTALNSTQRDYLHTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
            +IN+VLD +K+E+GKL LE + F LRA LD+V+ L +  + +KG+EL + I   VP+ +
Sbjct: 343 GIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNI 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QII NL+GN+IKFTE G+I + V       + +E+E ++       +G  ++
Sbjct: 403 IGDPMRMQQIIVNLLGNAIKFTESGNIDIRVEKRASSNNRMELEVQIHD-----TGIGIS 457

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+  S                                           ++F  F Q   S
Sbjct: 458 DKQQS-------------------------------------------QLFQAFRQADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG-NGSSTSNEHNSQQM 548
           ISR HGGTG+GL I++ LV  M GEI F S  + GSTF F      N ++ S+ H    +
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHVNLALNPNAASDPHIMDCL 534

Query: 549 NNQPNS-VSSEFQGMKALV--VDPRPIRAKVS---------RYHIQRLGIQV-EVVS--- 592
            NQ  + V S     KA++  ++  P++   S          Y +  +G+ V E+ S   
Sbjct: 535 ENQHLAYVESNPAAAKAVLEMLNATPMKVSYSTSLDELTEEHYDVLLMGLPVMEMQSLEI 594

Query: 593 DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 652
           D+ Q    +  G  +I  +  + +V+ +D          L+  G                
Sbjct: 595 DEEQLAPMLQRGGSVIMALPFQMQVYAED----------LKARG---------------- 628

Query: 653 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKI 712
                      + + ++KPL       S+ R + V    + R   LP +     LL  ++
Sbjct: 629 -----------VTACLIKPL-------SMTRLLPVLIDHHHRRDLLPQVE--RTLLPLRV 668

Query: 713 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEA 772
           + VDDN  NLK+  A L+     +V  + G+ A       H  D   MDIQMPE+DG  A
Sbjct: 669 MAVDDNPANLKLIGALLEELVVDIVLCDSGEAAIVQARQQH-LDIILMDIQMPEIDGIRA 727

Query: 773 TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832
           +++IR++  + N                     PI+A+TA  +    E+ + +GM  Y++
Sbjct: 728 SELIRKLPQHAN--------------------TPIVAVTAHAMDGEREQLMNAGMKDYLA 767

Query: 833 KPFEAEQLYREVSRF-------FPPI 851
           KP + ++L   ++R+        PP+
Sbjct: 768 KPIDEQKLGHLLARYSSNGQRALPPV 793


>gi|345870773|ref|ZP_08822723.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
 gi|343921242|gb|EGV31963.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
          Length = 1050

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 180/630 (28%), Positives = 298/630 (47%), Gaps = 85/630 (13%)

Query: 238 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +VEE    ++E K +AEAA  AKS+FL+++SHE+RTPMN ++G+ ++L DTEL   Q  +
Sbjct: 386 QVEE---ALIEAKHRAEAATEAKSRFLSSMSHELRTPMNAIIGVGEVLADTELGRDQVHF 442

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           +R  Q++G  L+++IN++LD +K+ESG+L LE++ F+L  +++++  + + +++ KG++L
Sbjct: 443 IRILQSAGDDLLNVINDILDISKIESGELTLESIDFDLSQLVEEICDMLAIRARTKGLDL 502

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
           A+ +   +P+ ++GDP R RQI+ NL+GN++KFTE+G++ V V L          ET + 
Sbjct: 503 ALRLGRYLPKRIVGDPHRLRQILINLIGNAVKFTEQGYVSVEVSL---------EETSVP 553

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
           S+     G  VA                              L+ S+ DTG GIP + Q 
Sbjct: 554 SAAEKPPGSQVA------------------------------LVFSIRDTGIGIPEDKQE 583

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           +IF  F QV  S +R +GGTG+GL IS+ L   M G I   S P +GS F        G 
Sbjct: 584 QIFESFTQVDSSTTRQYGGTGLGLGISRRLATLMGGTIEVHSTPGLGSLFAVHLTVQTGK 643

Query: 538 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI---QVEVVSDQ 594
             +      ++ + P          + L+VD   +   +    +   G+   + E     
Sbjct: 644 DETVSAPPAEIPDPPEK--------RILIVDDIEVNRLILGEMLLEWGMDFAEAESAEQA 695

Query: 595 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 654
           L  L+   +  +  +++L+  + W     +  L + N+      F     ++  S +   
Sbjct: 696 LTLLNAARNAGRPFDILLL--DYWMP--GMDGLDLANVITQDLDFADLDIVMLASDTLIM 751

Query: 655 ANTSTDGVSIPSVIMKPLR----SSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
               T  + +   ++KP++      +L    Q A G G     +         R L   R
Sbjct: 752 DKARTQRIRLAGHLVKPVKKRDLKRLLVGFTQIATGPGTSSGEQGATTEDDG-RSLPAAR 810

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            IL+V+D+  N  +  A L R    V   E G +A E     + +    MD+QMP MDG+
Sbjct: 811 -ILVVEDSPHNRTLIQAFLARTPLRVDYAENGAEAIE-KWNANAYTLVLMDMQMPVMDGY 868

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
           EAT  IRE E         G               PI+A+TA  + A  + CL +G D +
Sbjct: 869 EATTAIREQERT------EGRAP-----------TPIVALTAFALTADVDTCLAAGCDAH 911

Query: 831 VSKPFEAEQLYREVSRFF----PPIPDRSP 856
           ++KP      +R +        PP  +  P
Sbjct: 912 LAKPIRKRDFFRMLHTHLGAASPPTAEHPP 941


>gi|437371372|ref|ZP_20749333.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 22558]
 gi|435206426|gb|ELN89951.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 22558]
          Length = 916

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 181/616 (29%), Positives = 290/616 (47%), Gaps = 128/616 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         V  +G ST+  
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHIHLDLNPNVIIDGPSTACL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              +    +PN+ +++            +V  P      ++ Y I  L + V   E ++ 
Sbjct: 535 AGKRLAYIEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTM 594

Query: 594 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 653
           Q + L++ AS +  +                       L  L C  Q      A  +   
Sbjct: 595 QHERLAKAASMTDFL-----------------------LLALPCHAQIN----AEKLKQG 627

Query: 654 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 713
            A          + ++KPL S+ L  +L     + +       +   +++        ++
Sbjct: 628 GA---------AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVM 671

Query: 714 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
            VDDN  NLK+  A L+     V   + G +A +      QFD   MDIQMP+MDG  A 
Sbjct: 672 AVDDNPANLKLIGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRAC 730

Query: 774 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
           ++I ++ H                        P++A+TA  +    E+ L +GM+ Y++K
Sbjct: 731 ELIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAK 770

Query: 834 PFEAEQLYREVSRFFP 849
           P E E+L+  + R+ P
Sbjct: 771 PIEEEKLHNLLLRYKP 786


>gi|425175628|ref|ZP_18573748.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FDA504]
 gi|429021990|ref|ZP_19088515.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           96.0428]
 gi|408090223|gb|EKH23500.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           FDA504]
 gi|427275486|gb|EKW40101.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           96.0428]
          Length = 748

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 113 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 172

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 173 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 232

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 233 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 289

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 290 DQSRLFQAFR---------------------------------------------QADAS 304

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 305 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 364

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 365 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 421

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 422 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 453

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 454 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 504

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 505 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 561

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 562 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 601

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 602 IEEERLHNLLLRYKP 616


>gi|294637606|ref|ZP_06715886.1| sensor protein GacS [Edwardsiella tarda ATCC 23685]
 gi|451965956|ref|ZP_21919211.1| two-component histidine kinase BarA [Edwardsiella tarda NBRC
           105688]
 gi|291089236|gb|EFE21797.1| sensor protein GacS [Edwardsiella tarda ATCC 23685]
 gi|451315205|dbj|GAC64573.1| two-component histidine kinase BarA [Edwardsiella tarda NBRC
           105688]
          Length = 934

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 181/601 (30%), Positives = 288/601 (47%), Gaps = 101/601 (16%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T L  TQ DY+ T + S   L+
Sbjct: 277 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKTPLSATQIDYLHTIERSANNLL 336

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+GKL LE + F LR  +D+V +L +  + DKG+EL + + + VPE +
Sbjct: 337 SIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVRNDVPEHV 396

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GDP R +Q++TNL+GN+IKFTEKG+I + +        ++E+E ++  +          
Sbjct: 397 LGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIEQRSLNTQAVELEVQVHDT---------- 446

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                                 G GI    QS++F  F Q   S
Sbjct: 447 --------------------------------------GIGISERQQSQLFQAFRQADAS 468

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           I+R HGGTG+GL I++ L+  M G+I F S P+ GSTF F             H   ++N
Sbjct: 469 ITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGSTFWF-------------HIRLELN 515

Query: 550 NQ--PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 606
           +   P S+  E   G   L ++  P+ A+ +   ++   ++V          +Q+   S 
Sbjct: 516 HNAPPASLPLERLDGQTLLYIESNPVAAQCTLDMLKVTPLEVTYCPQ----FAQVIPDSH 571

Query: 607 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 666
             +++L    V    TS+++  +            ++ L   S +   ++T      I  
Sbjct: 572 -YDILLFGLPV---QTSLTSEHMQEKLSRALRLADRVILALPSHTLHDSDT-LKARGIRR 626

Query: 667 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 726
            + KPL SS L  +L     + N    R  ++ S S   L L   ++ VDDN  NLK+  
Sbjct: 627 CLFKPLASSRLLPAL-----LDNALPPRAPQVISPSGDRLPL--TVMAVDDNPANLKLIG 679

Query: 727 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786
           A L       +    G++A          D   MDIQMPEMDG   T+           R
Sbjct: 680 ALLGEQVQHTLLCHSGEEALAAAR-DRPLDIILMDIQMPEMDGIRTTE-----------R 727

Query: 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846
           +R+  +         + H PI+A+TA  +    E  LR+GMD Y++KP +  +L + ++R
Sbjct: 728 LRQQPI---------HAHTPIIAVTAHALNGERERLLRAGMDDYLAKPIDENRLRQLLTR 778

Query: 847 F 847
           +
Sbjct: 779 Y 779


>gi|421383353|ref|ZP_15833391.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 485549-17]
 gi|395995587|gb|EJI04651.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 485549-17]
          Length = 918

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 181/616 (29%), Positives = 290/616 (47%), Gaps = 128/616 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         V  +G ST+  
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHIHLDLNPNVIIDGPSTACL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              +    +PN+ +++            +V  P      ++ Y I  L + V   E ++ 
Sbjct: 535 AGKRLAYIEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTM 594

Query: 594 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 653
           Q + L++ AS +  +                       L  L C  Q      A  +   
Sbjct: 595 QHERLAKAASMTDFL-----------------------LLALPCHAQIN----AEKLKQG 627

Query: 654 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 713
            A          + ++KPL S+ L  +L     + +       +   +++        ++
Sbjct: 628 GA---------AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVM 671

Query: 714 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
            VDDN  NLK+  A L+     V   + G +A +      QFD   MDIQMP+MDG  A 
Sbjct: 672 AVDDNPANLKLIGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRAC 730

Query: 774 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
           ++I ++ H                        P++A+TA  +    E+ L +GM+ Y++K
Sbjct: 731 ELIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAK 770

Query: 834 PFEAEQLYREVSRFFP 849
           P E E+L+  + R+ P
Sbjct: 771 PIEEEKLHNLLLRYKP 786


>gi|331654269|ref|ZP_08355269.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M718]
 gi|331047651|gb|EGI19728.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M718]
          Length = 918

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLPM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|417237135|ref|ZP_12035102.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           9.0111]
 gi|386214220|gb|EII24643.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           9.0111]
          Length = 918

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSVLPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|198245109|ref|YP_002216932.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205353904|ref|YP_002227705.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|375120429|ref|ZP_09765596.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Dublin str. SD3246]
 gi|375124766|ref|ZP_09769930.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. SG9]
 gi|421360545|ref|ZP_15810821.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 622731-39]
 gi|421363319|ref|ZP_15813561.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 639016-6]
 gi|421369643|ref|ZP_15819818.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 640631]
 gi|421374086|ref|ZP_15824217.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 77-0424]
 gi|421378977|ref|ZP_15829056.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607307-6]
 gi|421384998|ref|ZP_15835021.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 596866-22]
 gi|421389358|ref|ZP_15839341.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 596866-70]
 gi|421396644|ref|ZP_15846569.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 629164-26]
 gi|421399423|ref|ZP_15849318.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 629164-37]
 gi|421406086|ref|ZP_15855911.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 639672-46]
 gi|421408385|ref|ZP_15858184.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 639672-50]
 gi|421414983|ref|ZP_15864719.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 77-1427]
 gi|421417413|ref|ZP_15867123.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 77-2659]
 gi|421420752|ref|ZP_15870428.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 78-1757]
 gi|421428397|ref|ZP_15878008.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 22510-1]
 gi|421430839|ref|ZP_15880425.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 8b-1]
 gi|421435732|ref|ZP_15885268.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648905 5-18]
 gi|421440151|ref|ZP_15889631.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 6-18]
 gi|421443790|ref|ZP_15893229.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 50-3079]
 gi|421449260|ref|ZP_15898644.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 58-6482]
 gi|436602026|ref|ZP_20513066.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 22704]
 gi|436818420|ref|ZP_20535053.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1884]
 gi|436832643|ref|ZP_20536933.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1594]
 gi|436853010|ref|ZP_20543035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1566]
 gi|436861201|ref|ZP_20548385.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1580]
 gi|436867569|ref|ZP_20552723.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1543]
 gi|436872914|ref|ZP_20555796.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1441]
 gi|436880416|ref|ZP_20560175.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1810]
 gi|436891539|ref|ZP_20566239.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1558]
 gi|436899554|ref|ZP_20570965.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1018]
 gi|436903064|ref|ZP_20573528.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1010]
 gi|436914851|ref|ZP_20579698.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1729]
 gi|436919551|ref|ZP_20582332.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_0895]
 gi|436928842|ref|ZP_20588048.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_0899]
 gi|436938545|ref|ZP_20593332.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1457]
 gi|436945893|ref|ZP_20597721.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1747]
 gi|436955357|ref|ZP_20602232.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_0968]
 gi|436966089|ref|ZP_20606758.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1444]
 gi|436969519|ref|ZP_20608516.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1445]
 gi|436985293|ref|ZP_20614878.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1559]
 gi|436993430|ref|ZP_20618223.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1565]
 gi|437004874|ref|ZP_20622104.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1808]
 gi|437018709|ref|ZP_20626914.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1811]
 gi|437027425|ref|ZP_20630314.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_0956]
 gi|437043065|ref|ZP_20636578.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1455]
 gi|437050739|ref|ZP_20640884.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1575]
 gi|437061971|ref|ZP_20647337.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1725]
 gi|437066887|ref|ZP_20649949.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1745]
 gi|437073886|ref|ZP_20653328.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1791]
 gi|437082971|ref|ZP_20658714.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1795]
 gi|437097712|ref|ZP_20665167.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 576709]
 gi|437110497|ref|ZP_20667843.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 635290-58]
 gi|437118916|ref|ZP_20670651.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607308-16]
 gi|437129456|ref|ZP_20675932.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607308-19]
 gi|437141834|ref|ZP_20683518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607307-2]
 gi|437146084|ref|ZP_20685873.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607308-9]
 gi|437159927|ref|ZP_20694325.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SE15-1]
 gi|437169387|ref|ZP_20699780.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CVM_N202]
 gi|437175914|ref|ZP_20703090.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CVM_56-3991]
 gi|437184416|ref|ZP_20708281.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CVM_76-3618]
 gi|437264661|ref|ZP_20719937.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CVM_81-2490]
 gi|437269480|ref|ZP_20722723.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SL909]
 gi|437277691|ref|ZP_20727050.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SL913]
 gi|437315792|ref|ZP_20737480.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 638970-15]
 gi|437417449|ref|ZP_20753868.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 543463 22-17]
 gi|437463297|ref|ZP_20762979.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 561362 1-1]
 gi|437480007|ref|ZP_20768255.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 642044 4-1]
 gi|437495814|ref|ZP_20772958.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 642046 4-7]
 gi|437509365|ref|ZP_20776504.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648898 4-5]
 gi|437532862|ref|ZP_20780965.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648899 3-17]
 gi|437555663|ref|ZP_20784630.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648900 1-16]
 gi|437580414|ref|ZP_20791817.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 1-17]
 gi|437592576|ref|ZP_20795125.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 39-2]
 gi|437605158|ref|ZP_20799337.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648902 6-8]
 gi|437650084|ref|ZP_20809715.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648904 3-6]
 gi|437655967|ref|ZP_20810563.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 653049 13-19]
 gi|437679584|ref|ZP_20818074.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 642044 8-1]
 gi|437692352|ref|ZP_20821172.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 561362 9-7]
 gi|437714186|ref|ZP_20827590.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 543463 42-20]
 gi|437729860|ref|ZP_20830992.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 16-16]
 gi|437765487|ref|ZP_20835106.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 76-2651]
 gi|438090977|ref|ZP_20860707.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 81-2625]
 gi|438101634|ref|ZP_20864461.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 62-1976]
 gi|438116202|ref|ZP_20870721.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 53-407]
 gi|438144756|ref|ZP_20875701.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Pullorum str. ATCC 9120]
 gi|445128225|ref|ZP_21380117.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9184]
 gi|445145461|ref|ZP_21387423.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Dublin str. SL1438]
 gi|445151337|ref|ZP_21390287.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Dublin str. HWS51]
 gi|445171253|ref|ZP_21396079.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SE8a]
 gi|445204238|ref|ZP_21401228.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 20037]
 gi|445219252|ref|ZP_21402634.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SE10]
 gi|445345456|ref|ZP_21418152.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 13-1]
 gi|445362071|ref|ZP_21424064.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. PT23]
 gi|197939625|gb|ACH76958.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205273685|emb|CAR38675.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326624696|gb|EGE31041.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Dublin str. SD3246]
 gi|326629016|gb|EGE35359.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. SG9]
 gi|395981112|gb|EJH90334.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 622731-39]
 gi|395981766|gb|EJH90987.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 640631]
 gi|395987780|gb|EJH96942.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 639016-6]
 gi|395994210|gb|EJI03286.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 77-0424]
 gi|395995312|gb|EJI04377.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607307-6]
 gi|396009098|gb|EJI18031.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 629164-26]
 gi|396016917|gb|EJI25783.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 596866-70]
 gi|396018630|gb|EJI27492.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 596866-22]
 gi|396022314|gb|EJI31128.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 639672-46]
 gi|396027517|gb|EJI36280.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 629164-37]
 gi|396027800|gb|EJI36562.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 639672-50]
 gi|396035018|gb|EJI43699.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 77-1427]
 gi|396042248|gb|EJI50870.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 77-2659]
 gi|396043797|gb|EJI52395.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 78-1757]
 gi|396048432|gb|EJI56981.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 22510-1]
 gi|396054665|gb|EJI63157.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 8b-1]
 gi|396056144|gb|EJI64620.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648905 5-18]
 gi|396068286|gb|EJI76634.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 6-18]
 gi|396069421|gb|EJI77759.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 50-3079]
 gi|396070557|gb|EJI78885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 58-6482]
 gi|434938986|gb|ELL45876.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Pullorum str. ATCC 9120]
 gi|434970964|gb|ELL63525.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1884]
 gi|434974575|gb|ELL66919.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 22704]
 gi|434981242|gb|ELL73129.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1594]
 gi|434984355|gb|ELL76095.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1566]
 gi|434985645|gb|ELL77332.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1580]
 gi|434992721|gb|ELL84160.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1543]
 gi|434999771|gb|ELL90945.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1441]
 gi|435005260|gb|ELL96182.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1810]
 gi|435005668|gb|ELL96588.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1558]
 gi|435012689|gb|ELM03364.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1018]
 gi|435019494|gb|ELM09938.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1010]
 gi|435022933|gb|ELM13229.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1729]
 gi|435029386|gb|ELM19444.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_0895]
 gi|435033532|gb|ELM23424.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_0899]
 gi|435034069|gb|ELM23959.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1457]
 gi|435035465|gb|ELM25310.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1747]
 gi|435045733|gb|ELM35359.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_0968]
 gi|435046499|gb|ELM36114.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1444]
 gi|435058837|gb|ELM48144.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1445]
 gi|435062923|gb|ELM52097.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1559]
 gi|435065107|gb|ELM54213.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1565]
 gi|435072165|gb|ELM61094.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1808]
 gi|435081069|gb|ELM69723.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1811]
 gi|435083715|gb|ELM72316.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1455]
 gi|435085484|gb|ELM74037.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_0956]
 gi|435088455|gb|ELM76912.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1725]
 gi|435093443|gb|ELM81783.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1575]
 gi|435097693|gb|ELM85952.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1745]
 gi|435106356|gb|ELM94373.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 576709]
 gi|435107687|gb|ELM95670.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1791]
 gi|435108544|gb|ELM96509.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1795]
 gi|435118747|gb|ELN06398.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 635290-58]
 gi|435126676|gb|ELN14070.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607308-19]
 gi|435128002|gb|ELN15362.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607307-2]
 gi|435131638|gb|ELN18849.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607308-16]
 gi|435136329|gb|ELN23419.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607308-9]
 gi|435148706|gb|ELN35422.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SE15-1]
 gi|435149115|gb|ELN35829.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CVM_N202]
 gi|435156585|gb|ELN43075.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CVM_56-3991]
 gi|435159668|gb|ELN45986.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CVM_81-2490]
 gi|435161027|gb|ELN47269.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CVM_76-3618]
 gi|435172427|gb|ELN57970.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SL909]
 gi|435173087|gb|ELN58612.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SL913]
 gi|435180268|gb|ELN65376.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 638970-15]
 gi|435202084|gb|ELN85938.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 543463 22-17]
 gi|435218574|gb|ELO00975.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 561362 1-1]
 gi|435219036|gb|ELO01413.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 642044 4-1]
 gi|435226604|gb|ELO08169.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 642046 4-7]
 gi|435232648|gb|ELO13737.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648898 4-5]
 gi|435240665|gb|ELO21055.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 1-17]
 gi|435242113|gb|ELO22424.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648900 1-16]
 gi|435242411|gb|ELO22716.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648899 3-17]
 gi|435252925|gb|ELO32416.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 39-2]
 gi|435257101|gb|ELO36395.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648902 6-8]
 gi|435268018|gb|ELO46648.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648904 3-6]
 gi|435272524|gb|ELO50916.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 653049 13-19]
 gi|435272646|gb|ELO51035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 642044 8-1]
 gi|435279984|gb|ELO57721.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 561362 9-7]
 gi|435286131|gb|ELO63464.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 543463 42-20]
 gi|435289972|gb|ELO66922.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 16-16]
 gi|435307929|gb|ELO82958.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 76-2651]
 gi|435316025|gb|ELO89222.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 81-2625]
 gi|435324317|gb|ELO96250.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 62-1976]
 gi|435327717|gb|ELO99368.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 53-407]
 gi|444846234|gb|ELX71415.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Dublin str. SL1438]
 gi|444855094|gb|ELX80146.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9184]
 gi|444856237|gb|ELX81275.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Dublin str. HWS51]
 gi|444861541|gb|ELX86417.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SE8a]
 gi|444861925|gb|ELX86794.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 20037]
 gi|444871165|gb|ELX95615.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SE10]
 gi|444878999|gb|ELY03108.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 13-1]
 gi|444884381|gb|ELY08216.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. PT23]
          Length = 918

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 181/616 (29%), Positives = 290/616 (47%), Gaps = 128/616 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         V  +G ST+  
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHIHLDLNPNVIIDGPSTACL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              +    +PN+ +++            +V  P      ++ Y I  L + V   E ++ 
Sbjct: 535 AGKRLAYIEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTM 594

Query: 594 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 653
           Q + L++ AS +  +                       L  L C  Q      A  +   
Sbjct: 595 QHERLAKAASMTDFL-----------------------LLALPCHAQIN----AEKLKQG 627

Query: 654 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 713
            A          + ++KPL S+ L  +L     + +       +   +++        ++
Sbjct: 628 GA---------AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVM 671

Query: 714 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
            VDDN  NLK+  A L+     V   + G +A +      QFD   MDIQMP+MDG  A 
Sbjct: 672 AVDDNPANLKLIGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRAC 730

Query: 774 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
           ++I ++ H                        P++A+TA  +    E+ L +GM+ Y++K
Sbjct: 731 ELIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAK 770

Query: 834 PFEAEQLYREVSRFFP 849
           P E E+L+  + R+ P
Sbjct: 771 PIEEEKLHNLLLRYKP 786


>gi|437816457|ref|ZP_20842637.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SARB17]
 gi|435308605|gb|ELO83537.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SARB17]
          Length = 918

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 177/605 (29%), Positives = 287/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAVRIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +     ++   G +   V+P    A+ +   +    ++V V S     L      
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             I+++ +  +E          L + + R       +   LLA    +            
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +       +   +++        ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 738

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E E+L+  +
Sbjct: 739 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLL 781

Query: 845 SRFFP 849
            R+ P
Sbjct: 782 LRYKP 786


>gi|416899064|ref|ZP_11928546.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_7v]
 gi|417119217|ref|ZP_11969582.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           1.2741]
 gi|422780294|ref|ZP_16833079.1| hsp90-like protein [Escherichia coli TW10509]
 gi|422800705|ref|ZP_16849202.1| hsp90-like protein [Escherichia coli M863]
 gi|323966764|gb|EGB62195.1| hsp90-like protein [Escherichia coli M863]
 gi|323978603|gb|EGB73685.1| hsp90-like protein [Escherichia coli TW10509]
 gi|327251524|gb|EGE63210.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_7v]
 gi|386137570|gb|EIG78732.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           1.2741]
          Length = 918

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLFPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|449143784|ref|ZP_21774607.1| hybrid sensory histidine kinase BarA [Vibrio mimicus CAIM 602]
 gi|449080782|gb|EMB51693.1| hybrid sensory histidine kinase BarA [Vibrio mimicus CAIM 602]
          Length = 927

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 317/680 (46%), Gaps = 121/680 (17%)

Query: 187 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 240
           N  D  R+  +  R + K    L ++   I  + ++    H      I QAT +    +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268

Query: 241 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 297
           +     +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQTDY 328

Query: 298 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 357
           ++T + S   L+++IN++LD +K+E+GKL LE + F  + +L++V++L +  + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388

Query: 358 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417
            + I  ++P  ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +               
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433

Query: 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 477
                                            ++   D+I+L   V DTG GI    Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 478 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537
           ++F  F Q   SISR +GGTG+GL I++ LV  M GEI   S  + GSTF FT       
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520

Query: 538 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              N+ +++  +N++             L+++P    A + +  + + G++V     + +
Sbjct: 521 LPMNDGYDASLLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569

Query: 594 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 650
           + Q    +    + SK  N  LVE  V         + V        G  S    LA+ +
Sbjct: 570 EEQVYDYVLLNLAPSKETNPTLVELWVQRALAMAHNVIV--------GVPSTELALADQL 621

Query: 651 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 710
                            I KPL    L  +L        +  + N  LP      L L  
Sbjct: 622 MQRYP---------VKCIGKPLSRKKLLQTL-----AAQQPQLSNPSLPKPQADKLPLC- 666

Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
            ++ VDDN  NLK+  A L+     VV    G++A E     H FD   MDIQMP MDG 
Sbjct: 667 -VMAVDDNPANLKLITALLQERVECVVACTSGQEAIEQAQIRH-FDIILMDIQMPHMDGV 724

Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
            A K I+++               + Y +      P++A+TA  +    +  L++GMD Y
Sbjct: 725 TACKEIKQL---------------KGYSD-----TPVIAVTAHAMAGERDRLLKAGMDDY 764

Query: 831 VSKPFEAEQLYREVSRFFPP 850
           ++KP E E + ++V   + P
Sbjct: 765 LTKPIE-EHILQQVLVHWSP 783


>gi|398943889|ref|ZP_10670890.1| PAS domain S-box [Pseudomonas sp. GM41(2012)]
 gi|398158592|gb|EJM46932.1| PAS domain S-box [Pseudomonas sp. GM41(2012)]
          Length = 1516

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 182/604 (30%), Positives = 285/604 (47%), Gaps = 94/604 (15%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            ++  K++A+ A  AKS FLA +SHEIRTPMN VLGML ++ +T+L+  Q DYV  AQ + 
Sbjct: 773  LLYAKEQADTASAAKSSFLANMSHEIRTPMNAVLGMLQLVQNTDLNDRQLDYVTKAQTAA 832

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
            K+L+ L+N++LD +K+E+GKL+L+   F L  ++ D+  + +G    K VE+   +   +
Sbjct: 833  KSLLGLLNDILDYSKIEAGKLQLDVHPFELEPLMRDLAVVLAGNQGQKEVEVMFDLDANL 892

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  LIGD  R +Q++ NL GN++KFT +G I V+V              +L  ++N++S 
Sbjct: 893  PNDLIGDSLRLQQVLINLAGNALKFTMEGQIVVSV-------------EQLMRTENSVS- 938

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                                              L ++V DTG GI  E    IF  F Q
Sbjct: 939  ----------------------------------LRIAVSDTGIGISPEQLQCIFEGFTQ 964

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
               S +R  GGTG+GL I K LV  M GE+   S   +GS F F              N+
Sbjct: 965  AEASTTRRFGGTGLGLVICKRLVSLMGGELQVESQQGVGSRFWFDITLDVAP------NA 1018

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG- 604
            +   + P    S    ++ LV D   +  ++    +  LG + + VS   Q +  + +  
Sbjct: 1019 RLRPDSPGVDVS----IRILVADDNAMAGELLLRTVHALGWKADHVSGGTQAVEWVKNAQ 1074

Query: 605  --SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
               +  +++L++  + + D   +   +   R+ G G    + ++  +        + +  
Sbjct: 1075 ARGEAYDVVLMDWRMSDMDGLSAAQLI---RQQGNGVPPPMVIMITAYGREVLADANEMG 1131

Query: 663  SIPSV--IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL---RHLLLGRKILIVDD 717
              P V  + KP+    LA ++QRA+     G      LP  S       L G ++L+V+D
Sbjct: 1132 DAPFVGFLTKPVTPKQLADAVQRAL----NGKDLAQSLPPRSTVDRPQRLAGLRLLVVED 1187

Query: 718  NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQMPEMDGFEATKII 776
            N +N +VA   L   GA V   E G +    +M  +  FDA  MDIQMP++DG EAT+ I
Sbjct: 1188 NMLNRQVADELLTGEGAQVTLAEGGLEGVSRVMTENVSFDAVLMDIQMPDIDGLEATRRI 1247

Query: 777  REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
            R                     N     +PI+AMTA+      E CL +GM+ +V KP +
Sbjct: 1248 R--------------------SNPRFATLPIVAMTANASNTDREACLAAGMNEHVGKPID 1287

Query: 837  AEQL 840
             EQL
Sbjct: 1288 LEQL 1291


>gi|90412091|ref|ZP_01220098.1| putative sensor histidine kinase/response regulator [Photobacterium
           profundum 3TCK]
 gi|90327069|gb|EAS43448.1| putative sensor histidine kinase/response regulator [Photobacterium
           profundum 3TCK]
          Length = 897

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 186/607 (30%), Positives = 286/607 (47%), Gaps = 112/607 (18%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T L  +Q DY+ T + S   L+
Sbjct: 250 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTRLSSSQHDYLLTIEKSANNLL 309

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN++LD +K+E+GKL LE + F+    LD+V+ L +  + +KG+EL + +  R+P  L
Sbjct: 310 TIINDILDFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLKVDHRIPAGL 369

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q++TNL+GN++KFTE+G+I V+V              EL +SK+        
Sbjct: 370 IGDPLRIQQVVTNLIGNAVKFTERGNIDVSV--------------ELKASKD-------- 407

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
                                     + I L  +V DTG GI    Q+++F  F Q   S
Sbjct: 408 --------------------------ENIELQFTVRDTGIGISERQQAQLFQAFSQADAS 441

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR +GGTG+GL I++ LV +M GEI   S  + GSTF F+                   
Sbjct: 442 ISRRYGGTGLGLVITQKLVTQMGGEISLTSRLHQGSTFWFSLKMLKTDLPV--------- 492

Query: 550 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV-------EVVSDQLQCLSQIA 602
           +QP   +S   G K L+++P    A V +  + R G+ V       E V      L  + 
Sbjct: 493 SQPIDTTS-LVGQKVLLIEPNMQAASVVQQRLIRAGMFVTYRSTMPEEVEHHHFALICLP 551

Query: 603 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 662
            G +    IL+++    K   V+   + +L         +L                 GV
Sbjct: 552 PGQQPPIAILLDRVF--KAEQVTDKVIVSLPTTELALSERLI--------------NAGV 595

Query: 663 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 722
           S  + + KPL    L   L        +  + +   P+  +  L     ++ VDDN  NL
Sbjct: 596 S--ACLGKPLSHRKLFEVLNNEPDDILEPELLSLPEPAQKIEPL----TVMAVDDNPANL 649

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQ--FDACFMDIQMPEMDGFEATKIIREME 780
           K+ +A L      V+    G+KA E     HQ  FD  FMDIQMPEMDG  A + I + E
Sbjct: 650 KLISALLSERVETVITATGGRKAVEY---AHQKAFDLIFMDIQMPEMDGVTACEAIHKTE 706

Query: 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840
            N +                     P++A+TA  +    E  + +GMD Y++KP E   L
Sbjct: 707 LNHST--------------------PVIAVTAHAMPGERERLINAGMDDYLTKPIEEHIL 746

Query: 841 YREVSRF 847
            + ++++
Sbjct: 747 QQILAKW 753


>gi|392420591|ref|YP_006457195.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri CCUG
           29243]
 gi|390982779|gb|AFM32772.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri CCUG
           29243]
          Length = 915

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 184/614 (29%), Positives = 297/614 (48%), Gaps = 99/614 (16%)

Query: 234 NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT 293
           +RI  ++E+ +   E  ++A + + AKS+FLA +SHEIRTP+NGVLGML +L +T LD +
Sbjct: 383 DRINLLKEEGYRSREAAERAASENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPLDRS 442

Query: 294 QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDK 353
           QQ Y+ T  +SG +L+++IN++LD A++ SGKL LE + F+L  ++ + + LF+ ++ +K
Sbjct: 443 QQFYLDTISSSGNSLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEK 502

Query: 354 GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 413
            + L V +   VP  + GDP R +QI+ NL+ N++KFTE GH+ + V             
Sbjct: 503 QLSLHVGLEPGVPRRIRGDPTRLKQILMNLLSNALKFTEHGHVLLEV------------- 549

Query: 414 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 473
               S + T                    Q+G+             L+  V D+G G+  
Sbjct: 550 ----SCRQT--------------------QEGTR-----------RLVFCVSDSGIGMRQ 574

Query: 474 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533
           E  +++F  F Q   S +R +GG+G+GL+ISK LV  M G I   S P  GS F F    
Sbjct: 575 EVLAQLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSAPGRGSRFCFEIPL 634

Query: 534 GNGSSTSNEHNSQQMNNQPNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 592
            + S T +   +  +  +P  ++S+  +G++AL             + ++R G++ E   
Sbjct: 635 QSASDTEDPL-AHLLGGRPALLASQDTEGLEAL------------SHLLRRWGMRTERCQ 681

Query: 593 DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 652
              +CL    S       +LV    W    +    ++  LR      Q  L L +     
Sbjct: 682 TP-ECLPDYLS-DFTAPPLLVLLAPWPGSPAQ---WLERLRPHLEANQRVLMLYS---PV 733

Query: 653 SRANTSTDGVSIPSVIM----KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL 708
                 + G+ + S+ +     PLR ++ A             ++   E P         
Sbjct: 734 HEPPPPSLGLRLFSLALPLQSTPLREALQALYTPAPQQASEATDVAPAEQPPRE------ 787

Query: 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQMPEM 767
              IL+ +DN VN  V    LK+ G AV   + G++A +L    P       MD +MPE+
Sbjct: 788 -PCILVAEDNPVNQMVVRGLLKKRGYAVQLADNGRQAVDLYRRDPEAVQLILMDCEMPEL 846

Query: 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
           DGFEA++ IR++E          E+ ++A        VPI+A+TA V+    +  L SGM
Sbjct: 847 DGFEASRRIRKLE---------AELELQA--------VPIIAVTAHVLAEHRQRGLESGM 889

Query: 828 DGYVSKPFEAEQLY 841
           D ++ KP E+ QLY
Sbjct: 890 DEFIGKPLESRQLY 903


>gi|418591976|ref|ZP_13155856.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P2]
 gi|375049177|gb|EHS41684.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P2]
          Length = 919

 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 188/628 (29%), Positives = 290/628 (46%), Gaps = 108/628 (17%)

Query: 233 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 292
            +RI  ++E+     +  ++A   + AKS+FLA +SHEIRTP+NGVLGML +L DT LD 
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440

Query: 293 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 352
            Q  YV T  +SG AL+S+IN++LD A++ESGKL LE + F+L  +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500

Query: 353 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 412
           K + L + +   VP  L GDP R RQ++ NL+ N++KFT +GH+ V V            
Sbjct: 501 KRLHLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549

Query: 413 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 472
                                     + F++ G              L+ SV D+G GI 
Sbjct: 550 --------------------------RRFDEGGRE-----------RLLYSVSDSGIGIS 572

Query: 473 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532
            +AQ  +F  F Q   S  R +GG+G+GL+IS+ LV  M G I   S P  G+ F+    
Sbjct: 573 AQAQKTLFESFSQADSSTXRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632

Query: 533 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 591
                 +   +  +Q + ++P  ++SE      L +D         +  ++R G++VE  
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679

Query: 592 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 645
               +CL      + + +     +LV    W    S+   TL+           Q +  L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728

Query: 646 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 701
           L       +     +G+ + +    V +K LR ++L    +R    G        E P  
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERPPD 788

Query: 702 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT-ELLMPPHQFDACFM 760
           +         IL+ +DN VN  V    L + G AV     G+ A  E L  P+      M
Sbjct: 789 A-------PCILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 841

Query: 761 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
           D +MPEMDGFEAT++IR  E              + +       VPI+A+TA ++     
Sbjct: 842 DGEMPEMDGFEATRLIRREER------------AQGWP-----RVPIVALTAHILDEHRR 884

Query: 821 ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             + +GMD Y+ KP +  +LY  + R  
Sbjct: 885 AGIEAGMDAYLGKPVDRAELYATLERLL 912


>gi|207858224|ref|YP_002244875.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|436799619|ref|ZP_20523905.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CHS44]
 gi|437327624|ref|ZP_20740566.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 17927]
 gi|437341693|ref|ZP_20744816.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CHS4]
 gi|445267608|ref|ZP_21410161.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 436]
 gi|445336964|ref|ZP_21415849.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 18569]
 gi|206710027|emb|CAR34382.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|434959649|gb|ELL53095.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CHS44]
 gi|435191805|gb|ELN76361.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 17927]
 gi|435193359|gb|ELN77838.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CHS4]
 gi|444873862|gb|ELX98141.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 18569]
 gi|444888180|gb|ELY11792.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 436]
          Length = 918

 Score =  239 bits (609), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 181/616 (29%), Positives = 290/616 (47%), Gaps = 128/616 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         V  +G ST+  
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHIHLDLNPNVIIDGPSTACL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              +    +PN+ +++            +V  P      ++ Y I  L + V   E ++ 
Sbjct: 535 AGKRLAYIEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTM 594

Query: 594 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 653
           Q + L++ AS +  +                       L  L C  Q      A  +   
Sbjct: 595 QHERLAKAASMTDFL-----------------------LLALPCHAQIN----AEKLKQG 627

Query: 654 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 713
            A          + ++KPL S+ L  +L     + +       +   +++        ++
Sbjct: 628 GA---------AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVM 671

Query: 714 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
            VDDN  NLK+  A L+     V   + G +A +      QFD   MDIQMP+MDG  A 
Sbjct: 672 AVDDNPANLKLIGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRAC 730

Query: 774 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
           ++I ++ H                        P++A+TA  +    E+ L +GM+ Y++K
Sbjct: 731 ELIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAK 770

Query: 834 PFEAEQLYREVSRFFP 849
           P E E+L+  + R+ P
Sbjct: 771 PIEEEKLHNLLLRYKP 786


>gi|71909751|ref|YP_287338.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71849372|gb|AAZ48868.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 916

 Score =  239 bits (609), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 182/622 (29%), Positives = 296/622 (47%), Gaps = 88/622 (14%)

Query: 221 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 280
           ++ L+G I   T  + A++E     ++  K+ AEAA+ AKS FLA +SHEIRTPMNGV+G
Sbjct: 370 VSGLLGIIVDITDRKRAEIE-----VLRAKEAAEAANRAKSDFLANMSHEIRTPMNGVIG 424

Query: 281 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 340
           M D+ ++T L   Q++Y+  A++S ++L+++IN++LD +K+E+GKL++E + F+L  ++ 
Sbjct: 425 MTDLALETALTEEQREYLNIAKSSAESLLTVINDILDFSKIEAGKLQVEDIPFDLHRLIA 484

Query: 341 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400
           D L   + ++ +K +E+   +   VP  + GDP R RQ++ NL+GN+IKFTE+G      
Sbjct: 485 DTLKPLALRAHEKDIEILSDVVHDVPRFVKGDPSRIRQVLVNLVGNAIKFTEQG------ 538

Query: 401 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 460
                    I ++ +L   +N   G+ V                               +
Sbjct: 539 --------EIALQADLMQLQN---GHAV-------------------------------I 556

Query: 461 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520
             +V DTG GI  + Q  IF  F Q   S +R +GGTG+GLSI + LV  M G +   S 
Sbjct: 557 HFAVRDTGIGISADKQMLIFDAFAQEDSSTTRKYGGTGLGLSICRRLVELMGGTLWLHSE 616

Query: 521 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 580
           P  GSTF F+             N+  +   P  V+    G   L+VD      ++ R  
Sbjct: 617 PGKGSTFHFSVQL------QISENAIPLVIHPVDVT----GRHMLIVDDNATNRRILRGM 666

Query: 581 IQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640
           +  L +  +        L+ +       + IL++ ++ E D         +L        
Sbjct: 667 LATLHVTCQEADSGKTALALMREQGSQFDCILLDAQMPEMD---GYELARHLHAEHPALP 723

Query: 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE--L 698
             L L + ++          G++      KP+ S  L ++L R      K +       L
Sbjct: 724 PMLMLSSGALRGDALRCQEAGIA--GFFAKPISSDELLSALGRLFDNSPKESSPEPSPLL 781

Query: 699 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
              SLR       IL+V+D+  N K+A   L ++G      + G++A ++L     FD  
Sbjct: 782 TRHSLREAQRVLNILLVEDHPTNQKLALGLLNKWGHHGTLAQNGQEALDIL-ASQSFDII 840

Query: 759 FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
            MD+QMP M G EAT+           RIR  E +++          PI+AMTA  +Q  
Sbjct: 841 LMDMQMPVMSGVEATQ-----------RIRAREAAMQLPRT------PIIAMTAAAMQDD 883

Query: 819 YEECLRSGMDGYVSKPFEAEQL 840
            + CL +GMD Y++KP + ++L
Sbjct: 884 RDACLAAGMDDYLAKPIKVKEL 905


>gi|238754497|ref|ZP_04615852.1| Signal transduction histidine-protein kinase barA [Yersinia ruckeri
           ATCC 29473]
 gi|238707326|gb|EEP99688.1| Signal transduction histidine-protein kinase barA [Yersinia ruckeri
           ATCC 29473]
          Length = 902

 Score =  239 bits (609), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 183/612 (29%), Positives = 287/612 (46%), Gaps = 121/612 (19%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G     + T L  TQ DY++T Q S   L+
Sbjct: 253 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLTPTQTDYLQTIQRSANNLL 312

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           S+IN+VLD +K+E+ KL LE + F LR  LD+V+ L +  + +KG+EL + +++ VPE +
Sbjct: 313 SIINDVLDFSKLEAEKLVLEHIPFPLRETLDEVVILLAHTAHEKGLELTMQVNNDVPEQV 372

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           +GD  R +Q++TNL+GN+IKFTE G++ + V L                           
Sbjct: 373 VGDSMRLQQVMTNLLGNAIKFTENGNVDIHVSL--------------------------- 405

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
            R H+ +  K                    L V ++DTG GI  + QS++F  F Q   S
Sbjct: 406 -RSHTRRQIK--------------------LAVEIQDTGIGISEQQQSQLFQAFRQADAS 444

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST--FTFTAVFGNG--------SST 539
           ISR HGGTG+GL I++ LV  M G+I F S  N GST  F  T     G         S 
Sbjct: 445 ISRRHGGTGLGLVITERLVKEMDGDISFHSELNRGSTFRFHITLDLHEGMVYRQPTMESL 504

Query: 540 SNEHNSQ-QMNNQPNSVSSEFQGMKALVVDPRPIRAKVS--RYHIQRLGIQVEVVSDQLQ 596
           + +H +  + N      + +   +  L V   P  A+++   Y I  LG+ +   ++   
Sbjct: 505 AGKHLAYVERNPAAAQATLDMLSITPLRVTHSPTLAQLADKHYDILLLGVPIPFRTNM-- 562

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                    K+I  + +  +V     S S +    L++LG         L   +S++R  
Sbjct: 563 ----AGHQDKLIAALKMADQVILALPSQSQIDAEQLKQLGAKA-----CLVKPVSANR-- 611

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
                       + PL       +L   +    KG+     LP           +++ VD
Sbjct: 612 ------------LMPLLLKETPLALPAPVEPVTKGS----RLP----------LRVMAVD 645

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 776
           DN  NLK+    L+      +  E G+ A  +    H  D   MDIQMPE+DG  A+++I
Sbjct: 646 DNPANLKLIGTLLEEQVEETILCESGEAAIAIARD-HTLDVILMDIQMPEVDGIRASELI 704

Query: 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFE 836
            ++ ++ N                     PI+A+TA  I    E+ L+ GM  Y++KP +
Sbjct: 705 HQLPNHTN--------------------TPIIAVTAHAISGQQEQFLKIGMADYLAKPID 744

Query: 837 AEQLYREVSRFF 848
             +L + ++RF+
Sbjct: 745 ETRLTQALARFY 756


>gi|419182121|ref|ZP_13725732.1| HAMP domain protein [Escherichia coli DEC7C]
 gi|378022241|gb|EHV84928.1| HAMP domain protein [Escherichia coli DEC7C]
          Length = 734

 Score =  239 bits (609), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 99  KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 158

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 159 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 218

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 219 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 275

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 276 DQSRLFQAFR---------------------------------------------QADAS 290

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 291 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 350

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 351 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 407

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 408 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 439

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 440 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 490

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 491 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 547

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 548 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 587

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 588 IEEERLHNLLLRYKP 602


>gi|332527792|ref|ZP_08403830.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
            JA2]
 gi|332112187|gb|EGJ12163.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
            JA2]
          Length = 1151

 Score =  239 bits (609), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 178/608 (29%), Positives = 293/608 (48%), Gaps = 98/608 (16%)

Query: 252  KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 311
            +AEAA  AKS FLA +SHEIRTPMN ++G+  ++     D T ++ +     + + L+ +
Sbjct: 621  QAEAATRAKSAFLANMSHEIRTPMNAIIGLTHLMARDAADTTLRERLHKVDDAARHLLQV 680

Query: 312  INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 371
            IN++LD +K+E+G+L LE+V F+   ++  VL + +  +  KG+EL V  + R+PE L G
Sbjct: 681  INDILDLSKIEAGRLALESVEFSRDELMHRVLGMVTDAAARKGLEL-VLDTGRLPERLRG 739

Query: 372  DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
            D     Q + NL+ N++KFT+ G + +                                 
Sbjct: 740  DAQHLAQALINLLVNAVKFTDHGWVRL--------------------------------- 766

Query: 432  CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
                +G +   +D             + +   V DTG GI  E Q+R+F  F Q   S +
Sbjct: 767  ----RGERVAAEDSR-----------VLVRFEVRDTGIGITAERQARLFEAFEQADTSTT 811

Query: 492  RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 551
            R +GGTG+GL+++++L   M G+ G  S+P  GS+F F+   G G + + E        +
Sbjct: 812  RRYGGTGLGLALTRHLARLMGGDAGVDSVPGQGSSFWFSCWLGLGDTPATE--------R 863

Query: 552  PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---SKII 608
            P  V + F G++AL+VD  P   +V    ++R+G++V+  SD  Q + + A+G    +  
Sbjct: 864  PAVVQTPF-GLRALLVDDLPESREVLAEMLRRIGLEVDEASDGTQAIERFAAGRAAGRPP 922

Query: 609  NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS---IP 665
            ++++V+   W          V  LR+        + + A+      A+T  DG       
Sbjct: 923  DLLVVD---WRMPGLDGITTVLELRRREGELPPCILVTAHD-----ADTLRDGARQARFV 974

Query: 666  SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR---KILIVDDNNVNL 722
            +V+ KP+  S L  ++ +A+ +      +    PS +L  L       ++L+ +DN VN 
Sbjct: 975  AVLAKPVTPSSLNDAVSQAL-LSLPSGAQATAAPSEALTRLQCRPTRPRLLLAEDNLVNQ 1033

Query: 723  KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
            +VA A L+  G  V     G++A EL +    FD   MD+QMP  DG EAT+ IR    +
Sbjct: 1034 EVACALLEDAGIVVEVAADGEQAVELALR-GGFDIILMDMQMPGTDGLEATRRIRAQLGD 1092

Query: 783  FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 842
                                  VPI+AMTA+        CL +GM+ +++KP EA  LY 
Sbjct: 1093 ---------------------PVPIVAMTANAFDEDRAACLAAGMNDHIAKPVEAMTLYE 1131

Query: 843  EVSRFFPP 850
             + R+ PP
Sbjct: 1132 TLLRWLPP 1139


>gi|421152710|ref|ZP_15612287.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
           14886]
 gi|404524906|gb|EKA35200.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
           14886]
          Length = 918

 Score =  238 bits (608), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 188/628 (29%), Positives = 291/628 (46%), Gaps = 109/628 (17%)

Query: 233 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 292
            +RI  ++E+     +  ++A   + AKS+FLA +SHEIRTP+NGVLGML +L DT LD 
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440

Query: 293 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 352
            Q  YV T  +SG AL+S+IN++LD A++ESGKL LE + F+L  +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500

Query: 353 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 412
           K + L + +   VP  L GDP R RQ++ NL+ N++KFT +GH+ V V            
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549

Query: 413 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 472
                                     + F++ G              L+ SV D+G GI 
Sbjct: 550 --------------------------RRFDEGGRE-----------RLLYSVSDSGIGIS 572

Query: 473 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532
            +AQ  +F  F Q   S +R +GG+G+GL+IS+ LV  M G I   S P  G+ F+    
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632

Query: 533 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 591
                 +   +  +Q + ++P  ++SE      L +D         +  ++R G++VE  
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679

Query: 592 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 645
               +CL      + + +     +LV    W    S+   TL+           Q +  L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728

Query: 646 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 701
           L   +   +     +G+ + +    V +K LR ++L    +R    G          P  
Sbjct: 729 LLCPLQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSE----AAPDE 784

Query: 702 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT-ELLMPPHQFDACFM 760
            L        IL+ +DN VN  V    L + G AV     G+ A  E L  P+      M
Sbjct: 785 RLD----APCILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840

Query: 761 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
           D +MPEMDGFEAT++IR  E              + +       VPI+A+TA ++     
Sbjct: 841 DGEMPEMDGFEATRLIRREER------------AQGWP-----RVPIVALTAHILDEHRR 883

Query: 821 ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
             + +GMD Y+ KP +  +LY  + R  
Sbjct: 884 AGIEAGMDAYLGKPVDRAELYATLERLL 911


>gi|432544398|ref|ZP_19781238.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE236]
 gi|432549888|ref|ZP_19786653.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE237]
 gi|431073333|gb|ELD80984.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE236]
 gi|431079056|gb|ELD86035.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           KTE237]
          Length = 763

 Score =  238 bits (608), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 128 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 187

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 188 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 247

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 248 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 304

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 305 DQSRLFQAFR---------------------------------------------QADAS 319

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 320 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 379

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 380 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 436

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 437 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 468

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 469 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 519

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 520 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 576

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 577 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 616

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 617 IEEERLHNLLLRYKP 631


>gi|56414910|ref|YP_151985.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|168242719|ref|ZP_02667651.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451603|ref|YP_002046927.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197363838|ref|YP_002143475.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|386592651|ref|YP_006089051.1| BarA sensory histidine kinase (VarS, GacS) [Salmonella enterica
           subsp. enterica serovar Heidelberg str. B182]
 gi|419732031|ref|ZP_14258939.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41579]
 gi|419735655|ref|ZP_14262528.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41563]
 gi|419736957|ref|ZP_14263781.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41573]
 gi|419741819|ref|ZP_14268497.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41566]
 gi|419750490|ref|ZP_14276947.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41565]
 gi|421573241|ref|ZP_16018881.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. CFSAN00325]
 gi|421580314|ref|ZP_16025872.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. CFSAN00326]
 gi|421583158|ref|ZP_16028682.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. CFSAN00328]
 gi|56129167|gb|AAV78673.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|194409907|gb|ACF70126.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197095315|emb|CAR60872.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205338112|gb|EDZ24876.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|381290662|gb|EIC31926.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41579]
 gi|381293979|gb|EIC35119.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41563]
 gi|381306415|gb|EIC47289.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41565]
 gi|381306996|gb|EIC47862.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41573]
 gi|381315186|gb|EIC55949.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41566]
 gi|383799692|gb|AFH46774.1| BarA sensory histidine kinase (VarS, GacS) [Salmonella enterica
           subsp. enterica serovar Heidelberg str. B182]
 gi|402520070|gb|EJW27424.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. CFSAN00326]
 gi|402528726|gb|EJW35976.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. CFSAN00325]
 gi|402532084|gb|EJW39281.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. CFSAN00328]
          Length = 918

 Score =  238 bits (608), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 175/605 (28%), Positives = 287/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +     ++   G +   ++P    A+ +   +    ++V + S     L      
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYIEPNATAAQCTLDLLSDTPVEV-IYSPTFSALPLAHYD 578

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             I+++ +  +E          L + + R       +   LLA    +            
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +       +   +++        ++ VDDN  NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 738

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E E+L+  +
Sbjct: 739 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLL 781

Query: 845 SRFFP 849
            R+ P
Sbjct: 782 LRYKP 786


>gi|254467598|ref|ZP_05081007.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales
           bacterium Y4I]
 gi|206684346|gb|EDZ44830.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales
           bacterium Y4I]
          Length = 761

 Score =  238 bits (608), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 178/616 (28%), Positives = 288/616 (46%), Gaps = 87/616 (14%)

Query: 237 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 296
           A+ +E    + + ++ A+ A+ AKS+FLA +SHEIRTPMNGV+GM ++L +T LD  Q+ 
Sbjct: 217 AERDEREFALEQAREAADIANRAKSEFLANMSHEIRTPMNGVIGMAELLQETRLDDDQRM 276

Query: 297 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 356
           Y  T   SG AL+++IN++L+ +K+E+GKLEL    FNL+  ++DV++L S K+ +KGVE
Sbjct: 277 YAETIGKSGSALLTIINDILNFSKIEAGKLELSCAPFNLQTAVEDVVTLLSPKAAEKGVE 336

Query: 357 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 416
           + +     +PE   GD GR RQ+ITN+ GN++KFT +G++F+ V                
Sbjct: 337 VTMRYDPALPELFEGDAGRIRQVITNIAGNAVKFTCEGYVFIEVT--------------- 381

Query: 417 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476
                                  T   DG           L+ L   V DTG GI  +  
Sbjct: 382 ----------------------GTAQPDGGL---------LVRL--QVTDTGIGIAQDRI 408

Query: 477 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536
            RIF  F Q   + +R   GTG+GL+IS  L+  M G +   S+P  GS FT        
Sbjct: 409 GRIFRAFEQADNAATRNFEGTGLGLAISSRLLELMGGSVEVQSVPGKGSVFTIQIPL--- 465

Query: 537 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI---QVEVVSD 593
                   S++     +S    F G+  L+VD   +   +    +   G+   Q     +
Sbjct: 466 ------RASEKTLPAQDSGGRSFAGLSVLLVDDLELNRVILSERLNTWGVACTQAASAHE 519

Query: 594 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 653
            L+ LS      +  ++IL++ ++   D          +R +  GF++   ++ +S+ ++
Sbjct: 520 GLEILSDAQLDGRRFDVILLDYQMPAMDGHE---LAARIRAM-PGFETVPLIILSSVDNA 575

Query: 654 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG--VGNKGNIRNWELPSMSLRHLLLGRK 711
                 + +      +KP+R+  L   + R +   V    +    E        LL   K
Sbjct: 576 LCRADCETLGACEFALKPVRAVQLRQVMSRLLSRPVQKPADAAGAEAGLQPEGQLL---K 632

Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
           +L+ +DN  N  V    LK     +     G +A        + D   MD+ MPEMDG E
Sbjct: 633 VLLAEDNRTNQLVVTKMLKDAPLVISIAGNGAEAVARFR-AERPDIVLMDMMMPEMDGIE 691

Query: 772 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
           AT  +R +E        RG+              PI+A+TA+ +Q   E+CL++GMD ++
Sbjct: 692 ATAEMRRIEAETG----RGK-------------CPIVALTANALQTHREKCLQAGMDDFL 734

Query: 832 SKPFEAEQLYREVSRF 847
           SKP   + L   + ++
Sbjct: 735 SKPINKKALTEAIGKW 750


>gi|419176305|ref|ZP_13720119.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC7B]
 gi|378031511|gb|EHV94098.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli DEC7B]
          Length = 918

 Score =  238 bits (608), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 285/615 (46%), Gaps = 126/615 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL  TQ+D++ T + S   L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L +  S DKG+EL + I   VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +QIITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         +   G ST   
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 596
              +    +PNS +++       +    +V  P       + Y +  LGI V        
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591

Query: 597 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656
                         + ++ E   K  S++      +  L C  Q            +   
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623

Query: 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 716
              DG+   + ++KPL  + L  +L          + +N  LP      L +   ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674

Query: 717 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGFEATK 774
           DN  NLK+  A L+     V   + G +A E    MP   FD   MDIQMP+MDG  A +
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDGIRACE 731

Query: 775 IIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834
           +I ++ H                        P++A+TA  +    E+ L +GM  Y++KP
Sbjct: 732 LIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKQLGAGMSDYLAKP 771

Query: 835 FEAEQLYREVSRFFP 849
            E E+L+  + R+ P
Sbjct: 772 IEEERLHNLLLRYKP 786


>gi|428216794|ref|YP_007101259.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
 gi|427988576|gb|AFY68831.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
          Length = 797

 Score =  238 bits (608), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 185/612 (30%), Positives = 290/612 (47%), Gaps = 110/612 (17%)

Query: 260 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319
           KS FLA +SHEIRTPMN VLGM ++++ T+L   Q D+V   + SG +L++LINE+LD +
Sbjct: 270 KSLFLANMSHEIRTPMNAVLGMTELMLGTDLTPEQFDFVENIRISGDSLLNLINEILDLS 329

Query: 320 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
           K+E+G+++LE +SF+L + +++V +L + ++ +KG+E+   I   +P  + GD  R RQI
Sbjct: 330 KLEAGEMQLERLSFDLVSCVEEVATLLAAQAHNKGLEITTLIDPAIPWRVSGDSARLRQI 389

Query: 380 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
           +TNL+GN+IKFT  G + + V ++                                    
Sbjct: 390 LTNLLGNAIKFTNAGEVAIEVNIL------------------------------------ 413

Query: 440 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499
                       S   DLI L  +V DTG GI    Q ++F PF QV  S +R +GGTG+
Sbjct: 414 ------------SQQHDLIKLAFAVIDTGIGISQPNQDKLFMPFSQVDASTTRRYGGTGL 461

Query: 500 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ--MNNQPNSVSS 557
           GL+I K LV  M GEIG  S    G+ F F   F       + H + Q   N     + S
Sbjct: 462 GLAICKQLVHLMGGEIGVESELGEGTRFWFNLPF-------DLHQAAQPDFNQLSFILHS 514

Query: 558 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEV 617
              G + LVVD        SR  I R     +VV      +++  +G   + M+   +E 
Sbjct: 515 SLAGKRFLVVDDNA----NSRQAIVRQAANWDVV------VAEADNGGSALAML---RES 561

Query: 618 WEKDTSVSTLFVN----NLRKLGCGFQSK---------LFLLANSISSSRANTSTDGVSI 664
            + + +   + ++    ++  L    Q K         L  +  S   S A  + D    
Sbjct: 562 VQTEATYDLVLIDSVLGDMSGLDLAAQIKAEEALSNLQLVFITRSNQGSLARLALDRY-F 620

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR--HLLLGRKILIVDDNNVNL 722
              + KP++ S LA +L+  + +     +    LP+  ++        KIL+ +DN VN 
Sbjct: 621 ADHMTKPVKLSKLAETLRHVLNLDLDPTLSEI-LPAAEVKRQQQRTNLKILLAEDNLVNQ 679

Query: 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782
           KVA   L++ G      + G++  + LM    +D   MD QMP +DG+  T+ IR     
Sbjct: 680 KVALKMLEKLGYKADVAQNGQQVLQ-LMARTNYDLILMDCQMPLLDGYATTQEIRN---- 734

Query: 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF---EAEQ 839
                R GE          N H  I+AMTA+ ++   ++CL +GMD Y+SKP    + + 
Sbjct: 735 -----REGE----------NRHTVIVAMTANAMKEDRQKCLDAGMDDYISKPVSKKDIQD 779

Query: 840 LYREVSRFFPPI 851
           +  E S    P+
Sbjct: 780 ILDEWSSMITPL 791


>gi|421572828|ref|ZP_16018473.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. CFSAN00322]
 gi|402514904|gb|EJW22319.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. CFSAN00322]
          Length = 736

 Score =  238 bits (608), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 175/605 (28%), Positives = 287/605 (47%), Gaps = 106/605 (17%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 101 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 160

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 161 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 220

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 221 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 277

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 278 DQSRLFQAFR---------------------------------------------QADAS 292

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 549
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F             H +  +N
Sbjct: 293 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 339

Query: 550 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 604
             PN +     ++   G +   ++P    A+ +   +    ++V + S     L      
Sbjct: 340 --PNVIIDGPSTACLAGKRLAYIEPNATAAQCTLDLLSDTPVEV-IYSPTFSALPLAHYD 396

Query: 605 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 664
             I+++ +  +E          L + + R       +   LLA    +            
Sbjct: 397 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 447

Query: 665 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 724
            + ++KPL S+ L  +L     + +       +   +++        ++ VDDN  NLK+
Sbjct: 448 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 500

Query: 725 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784
             A L+     V   + G +A +      QFD   MDIQMP+MDG  A ++I ++ H   
Sbjct: 501 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRACELIHQLPH--- 556

Query: 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 844
                                P++A+TA  +    E+ L +GM+ Y++KP E E+L+  +
Sbjct: 557 -----------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLL 599

Query: 845 SRFFP 849
            R+ P
Sbjct: 600 LRYKP 604


>gi|260775203|ref|ZP_05884101.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608904|gb|EEX35066.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 927

 Score =  238 bits (608), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 214/740 (28%), Positives = 336/740 (45%), Gaps = 131/740 (17%)

Query: 129 GYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTL-N 187
           GY+    D+ SL      +L   Q IF     + +     +++   +  D    +S + N
Sbjct: 155 GYIAVELDLSSL------RLQQYQEIFSAFLVLLSGLGLSAVFAYRLMHDVTRPISHMKN 208

Query: 188 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVEE 241
             D  R+  +  R + K    L ++   I  + ++    H      I QAT +    +E+
Sbjct: 209 MVDRIRRGHLDVRIEGKMHGELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQ 268

Query: 242 DYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 298
                +EL   KK+A+ A   KS+FLA +SHE+RTP+NGV+G    ++ T+L  +Q DY+
Sbjct: 269 LEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTKLTNSQADYL 328

Query: 299 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 358
           +T + S   L+++IN++LD +K+E+GKL LE + F  +  L++V+SL +  + +KG+EL 
Sbjct: 329 QTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFQETLEEVVSLQATSAHEKGLELT 388

Query: 359 VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 418
           + +  ++P  L+GDP R +Q++TNL+GNSIKFTE+G+I ++V L  +  D++E++     
Sbjct: 389 LKVDPKIPAGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVELRSQKEDAVELQ----- 443

Query: 419 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 478
                                                        V DTG GI    Q++
Sbjct: 444 -------------------------------------------FMVRDTGIGISERQQAQ 460

Query: 479 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS 538
           +F  F Q   SISR +GGTG+GL I++ LV +M GEI   S  + GSTF FT        
Sbjct: 461 LFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRL----- 515

Query: 539 TSNEHNSQQMNNQPNSVSSEFQGMKA---LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 595
                NS  M   P S   E Q ++    L+V+P    A V++  + + G+ V   S   
Sbjct: 516 -----NSTDM---PVSDLLETQVLRQRTLLLVEPNMQAASVTQQTLVQEGLIVTYRSSIP 567

Query: 596 QCLSQI------ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 649
           +  SQ        + +K     LVEQ  W K                C  Q  + + + +
Sbjct: 568 EEASQFDYVLLNLAPNKTNEAELVEQ--WVKQAQ------------QCAPQVVVGIPSTA 613

Query: 650 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG 709
           ++ S     T  V     I KPL    L  +L       N+ ++   E+       L L 
Sbjct: 614 LALSDHLIQTHHV---HCITKPLSRRKLLQTL-----AANQESLPMVEIEPAYNETLPL- 664

Query: 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
             ++ VDDN  NLK+ +A L+     VV    G  A       H FD   MDIQMP MDG
Sbjct: 665 -TVMAVDDNPANLKLISALLQERVEKVVTCTNGLDAVAQAETQH-FDIILMDIQMPHMDG 722

Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
             A   I++ E N N                     P++A+TA  +    +  L +GMD 
Sbjct: 723 VTACGKIKQTELNAN--------------------TPVIAVTAHAMSGERDRLLGAGMDD 762

Query: 830 YVSKPFEAEQLYREVSRFFP 849
           Y++KP E   L + +  + P
Sbjct: 763 YLTKPIEEHVLQQVLMHWNP 782


>gi|437619273|ref|ZP_20803425.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648903 1-6]
 gi|437808394|ref|ZP_20840099.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 33944]
 gi|435258553|gb|ELO37813.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648903 1-6]
 gi|435300062|gb|ELO76157.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 33944]
          Length = 763

 Score =  238 bits (608), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 181/616 (29%), Positives = 290/616 (47%), Gaps = 128/616 (20%)

Query: 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309
           KK+A+ A   KS+FLA +SHE+RTP+NGV+G   + + TEL+ TQ+D++ T + S   L+
Sbjct: 128 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 187

Query: 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 369
           ++IN+VLD +K+E+GKL LE++ F LR  LD+V++L +  S DKG+EL + I + VP+ +
Sbjct: 188 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 247

Query: 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 429
           IGDP R +Q+ITNL+GN+IKFTE G+I + V         +++E ++   ++T  G P  
Sbjct: 248 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 304

Query: 430 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489
           D+   ++ F+                                             Q   S
Sbjct: 305 DQSRLFQAFR---------------------------------------------QADAS 319

Query: 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 542
           ISR HGGTG+GL I++ LV  M G+I F S PN GSTF F         V  +G ST+  
Sbjct: 320 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHIHLDLNPNVIIDGPSTACL 379

Query: 543 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 593
              +    +PN+ +++            +V  P      ++ Y I  L + V   E ++ 
Sbjct: 380 AGKRLAYIEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTM 439

Query: 594 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 653
           Q + L++ AS +  +                       L  L C  Q      A  +   
Sbjct: 440 QHERLAKAASMTDFL-----------------------LLALPCHAQIN----AEKLKQG 472

Query: 654 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 713
            A          + ++KPL S+ L  +L     + +       +   +++        ++
Sbjct: 473 GA---------AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVM 516

Query: 714 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773
            VDDN  NLK+  A L+     V   + G +A +      QFD   MDIQMP+MDG  A 
Sbjct: 517 AVDDNPANLKLIGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDGIRAC 575

Query: 774 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833
           ++I ++ H                        P++A+TA  +    E+ L +GM+ Y++K
Sbjct: 576 ELIHQLPH--------------------QQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAK 615

Query: 834 PFEAEQLYREVSRFFP 849
           P E E+L+  + R+ P
Sbjct: 616 PIEEEKLHNLLLRYKP 631


>gi|421590989|ref|ZP_16035913.1| two-component sensor histidine kinase/response regulator hybrid
            protein [Rhizobium sp. Pop5]
 gi|403703640|gb|EJZ19820.1| two-component sensor histidine kinase/response regulator hybrid
            protein [Rhizobium sp. Pop5]
          Length = 1021

 Score =  238 bits (608), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 177/631 (28%), Positives = 294/631 (46%), Gaps = 103/631 (16%)

Query: 246  MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 305
            + EL  +AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L  T LD  Q+ ++     SG
Sbjct: 471  LRELLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFIDIIVKSG 530

Query: 306  KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 365
             AL+++IN++LD +K+++G+++L   +F++   ++DV +L S  + +K +EL V  +  +
Sbjct: 531  NALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPDL 590

Query: 366  PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425
            P  +IGD GRFRQI+TNL+GN++KFTE+GH+FV V                         
Sbjct: 591  PAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDV------------------------- 625

Query: 426  YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485
                       GF+T             +   I   + +EDTG GIP E  + +F  F Q
Sbjct: 626  -----------GFETI------------AGGEIMATIRIEDTGIGIPSEKLASVFDKFSQ 662

Query: 486  VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 545
            V  S +R H GTG+GL+I+  LV    G +   S    GS FT    F   ++       
Sbjct: 663  VDASSTRRHEGTGLGLAITAGLVDLFGGYLDVDSEWGKGSVFTVNLPFAVAAARL----- 717

Query: 546  QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL---GIQVEVVSDQLQCLSQIA 602
                 +P  +    QG + LVVD   +  ++    +      G+  E     L  L   A
Sbjct: 718  -----EPKPLPINVQGARILVVDDNEVNRRILTEQLSLWGFDGVAAEGGGTGLAILEAAA 772

Query: 603  SGSKIINMILVEQEVWEKD-TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 661
                 ++ ++++  + + +   V+     + R +       +FL +  IS +    +   
Sbjct: 773  DLGVTVDAVVLDYHMPDMNGADVARRLRADPRFVELPI---IFLTSMDISGTEKEFAA-- 827

Query: 662  VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----------- 710
            ++  + +MKP R+++L  ++   +       +   E+  +                    
Sbjct: 828  LNGHAHLMKPARANVLRNTVVEVVRARRVKQVSEAEIARLQAEAAAPAPESAPVPQTRAA 887

Query: 711  ---KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
                +L+ +DN VN  V    L+  G + + V  G++A       H      MD+ MP M
Sbjct: 888  EFVDVLVAEDNEVNQIVFTQILQGTGLSFLVVNNGQEAVAAWQ-SHTPRIIMMDVSMPVM 946

Query: 768  DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
            +G EAT+ IR++E     R                  VPI+ +TA  +++  + CL +GM
Sbjct: 947  NGHEATRTIRKLEQGQGRR------------------VPIIGVTAHALESDRDLCLDAGM 988

Query: 828  DGYVSKPFEAEQLYREVSRFF---PPIPDRS 855
            D Y+SKP   E L  ++ ++      +P+R+
Sbjct: 989  DDYMSKPISPELLEEKIRQWLGKDEQLPERT 1019


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.318    0.134    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,516,730,456
Number of Sequences: 23463169
Number of extensions: 512069622
Number of successful extensions: 1889455
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 38825
Number of HSP's successfully gapped in prelim test: 59026
Number of HSP's that attempted gapping in prelim test: 1619872
Number of HSP's gapped (non-prelim): 206276
length of query: 856
length of database: 8,064,228,071
effective HSP length: 152
effective length of query: 704
effective length of database: 8,792,793,679
effective search space: 6190126750016
effective search space used: 6190126750016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)