BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003018
(856 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T4J|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
pdb|3T4J|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
pdb|3T4K|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
pdb|3T4K|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
pdb|3T4L|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
pdb|3T4L|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
pdb|3T4O|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
pdb|3T4O|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
pdb|3T4Q|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
pdb|3T4Q|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
pdb|3T4S|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
pdb|3T4S|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
pdb|3T4T|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
pdb|3T4T|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
Length = 270
Score = 243 bits (620), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 120/198 (60%), Positives = 146/198 (73%), Gaps = 10/198 (5%)
Query: 10 RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 69
+V+ ERE FE+Q W IK MD + EPSP+ +EYAPVIF+QD+VS++ SLDM+
Sbjct: 81 KVVNFEREMFERQHNWVIKTMD--------RGEPSPVRDEYAPVIFSQDSVSYLESLDMM 132
Query: 70 SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 129
SG+EDREN+LRAR +GK VLT+PFRLL+T+ LGV+LTF VYK LP N T ERI AT G
Sbjct: 133 SGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAG 192
Query: 130 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSN--VSDDGLWLVSTLN 187
YLGG FD+ESLVE LL QLA Q I V+VYDITN S P+ MYG+ +D L S L+
Sbjct: 193 YLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLD 252
Query: 188 FGDPFRKHEMRCRFKQKA 205
FGDPFRKH+M CR+ QKA
Sbjct: 253 FGDPFRKHKMICRYHQKA 270
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 80/144 (55%), Gaps = 7/144 (4%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
KIL+V+DN +N+ VA + +K+ G + G +A + +D MD+ MP +DG
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAI-NSSSYDLVLMDVCMPVLDGL 68
Query: 771 EATKIIREMEH--NFNNRIRRG-EVSIEAYENVS---NFHVPILAMTADVIQATYEECLR 824
+AT++IR E N+N I G ++S E V +PI+AMTA+ + + EEC
Sbjct: 69 KATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAESSEECYA 128
Query: 825 SGMDGYVSKPFEAEQLYREVSRFF 848
+GMD ++SKP ++L + ++
Sbjct: 129 NGMDSFISKPVTLQKLRECLQQYL 152
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 36/162 (22%)
Query: 687 VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVV--CVERGKK 744
+GN + + PS L G+++L+VDDN ++ KVA LK+ G + V C + GK+
Sbjct: 41 IGNPEDEQETSKPSDD--EFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQC-DSGKE 97
Query: 745 A----TELLMPPHQ--------FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 792
A TE L + FD FMD QMPEMDG+EAT+ IR++E ++ R
Sbjct: 98 ALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVR------ 151
Query: 793 SIEAYENVSNFHVPILAMTA-DVIQATYEECLRSGMDGYVSK 833
PI+A++ D E +++GMD ++ K
Sbjct: 152 ------------TPIIAVSGHDPGSEEARETIQAGMDAFLDK 181
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
pdb|4EW8|B Chain B, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
Length = 268
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 68/274 (24%), Positives = 113/274 (41%), Gaps = 60/274 (21%)
Query: 256 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINE 314
A+ K F+ VS+E+RTP+ ++G ++L + + +++V +A+ L I++
Sbjct: 36 AERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDD 95
Query: 315 VLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG 374
VLD A++++G++ LE + +L + +Q GV LAV + V + GD
Sbjct: 96 VLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDV-GLIRGDGK 154
Query: 375 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHS 434
R Q + +L+ +N L P R
Sbjct: 155 RLAQTLDHLV-----------------------------------ENALRQTPPGGRVTL 179
Query: 435 WKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 494
S+ L + + V DTG+G+P Q+ IF F + R
Sbjct: 180 -----------------SARRALGEVRLDVSDTGRGVPFHVQAHIFDRF------VGRDR 216
Query: 495 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 528
GG G+GL++ K LV G + S P GSTFT
Sbjct: 217 GGPGLGLALVKALVELHGGWVALESEPGNGSTFT 250
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor
Histidine Kinase Protein
Length = 258
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 122/276 (44%), Gaps = 56/276 (20%)
Query: 257 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDV-TQQDYVRTAQASGKALVSLIN 313
D K++F+A +SHE+RTP+ + + + ++ ELD+ T ++++ L +L+N
Sbjct: 17 DRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLN 76
Query: 314 EVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP 373
E+LD +++E L++ +L +++ ++ + V + + P DP
Sbjct: 77 ELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDP 136
Query: 374 GRFRQIITNLMGNSIKFTEKG--HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
R RQ++ NL+ N +K+++K +V V L E
Sbjct: 137 TRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDE--------------------------- 169
Query: 432 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
+DG +++ VED G GIP A+ RIF F +V S++
Sbjct: 170 -----------KDGG-------------VLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLT 205
Query: 492 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
GTG+GL+I+K +V G I S GS F
Sbjct: 206 YEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRF 241
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 258
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 122/276 (44%), Gaps = 56/276 (20%)
Query: 257 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDV-TQQDYVRTAQASGKALVSLIN 313
D K++F+A +SHE+RTP+ + + + ++ ELD+ T ++++ L +L+N
Sbjct: 17 DRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLN 76
Query: 314 EVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP 373
E+LD +++E L++ +L +++ ++ + V + + P DP
Sbjct: 77 ELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDP 136
Query: 374 GRFRQIITNLMGNSIKFTEKG--HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 431
R RQ++ NL+ N +K+++K +V V L E
Sbjct: 137 TRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDE--------------------------- 169
Query: 432 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491
+DG +++ VED G GIP A+ RIF F +V S++
Sbjct: 170 -----------KDGG-------------VLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLT 205
Query: 492 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527
GTG+GL+I+K +V G I S GS F
Sbjct: 206 YEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRF 241
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 26/142 (18%)
Query: 711 KILIVDDNNVNLKVAA-----AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 765
KIL+V+DN+VN +V G++ A E K EL ++ FMD+QMP
Sbjct: 3 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP 62
Query: 766 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 825
++DG +TK+IR + PI+A+TA + +ECL S
Sbjct: 63 KVDGLLSTKMIRR---------------------DLGYTSPIVALTAFADDSNIKECLES 101
Query: 826 GMDGYVSKPFEAEQLYREVSRF 847
GM+G++SKP + +L ++ F
Sbjct: 102 GMNGFLSKPIKRPKLKTILTEF 123
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 26/142 (18%)
Query: 711 KILIVDDNNVNLKVAA-----AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 765
KIL+V+DN+VN +V G++ A E K EL ++ FMD+QMP
Sbjct: 4 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP 63
Query: 766 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 825
++DG +TK+IR + PI+A+TA + +ECL S
Sbjct: 64 KVDGLLSTKMIRR---------------------DLGYTSPIVALTAFADDSNIKECLES 102
Query: 826 GMDGYVSKPFEAEQLYREVSRF 847
GM+G++SKP + +L ++ F
Sbjct: 103 GMNGFLSKPIKRPKLKTILTEF 124
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 58/131 (44%), Gaps = 25/131 (19%)
Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
+LI +DN++ VAA L++ + V G +A + QFD MDIQMP MDG E
Sbjct: 13 VLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN-RQFDVIIMDIQMPVMDGLE 71
Query: 772 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG--MDG 829
A IR E N + I+A+TAD I R G +D
Sbjct: 72 AVSEIRNYERTHNTK-----------------RASIIAITADTIDDD-----RPGAELDE 109
Query: 830 YVSKPFEAEQL 840
YVSKP QL
Sbjct: 110 YVSKPLNPNQL 120
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine
Kinase Walk (yycg) Domain
Length = 177
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 460 LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS 519
L +SV+D G GIP + ++F F +V + +R GGTG+GL+I+K +V G+I S
Sbjct: 78 LYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADS 137
Query: 520 IPNIGSTFTFT 530
I G+T TFT
Sbjct: 138 IEGKGTTITFT 148
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 23/136 (16%)
Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
IL+VDD+ +N ++ A L G G A +L H D D+ MP MDG+
Sbjct: 132 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH-IDIVLSDVNMPNMDGYR 190
Query: 772 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
T+ IR++ +P++ +TA+ + + CL SGMD +
Sbjct: 191 LTQRIRQL----------------------GLTLPVIGVTANALAEEKQRCLESGMDSCL 228
Query: 832 SKPFEAEQLYREVSRF 847
SKP + + + ++ +
Sbjct: 229 SKPVTLDVIKQTLTLY 244
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
Length = 349
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 102/250 (40%), Gaps = 67/250 (26%)
Query: 262 QFLATVSHEIRTPMNGVLGMLDMLMDTELD--VTQQDYVRTAQASGKALVSLINEVLDQA 319
+ A V+HEIR P+ ++G M M LD T + Y+ L +++ E+L+ +
Sbjct: 134 EMTARVAHEIRNPIT-IIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYS 192
Query: 320 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 379
K + LE FNL ++ +V LF K + ++ + +D + D R +Q+
Sbjct: 193 K---ERQVLEFTEFNLNELIREVYVLFEEKIRKMNIDFC-FETDNEDLRVEADRTRIKQV 248
Query: 380 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 439
+ NL+ N+I+ T
Sbjct: 249 LINLVQNAIEAT------------------------------------------------ 260
Query: 440 TFNQDGSTSPFKSSSADLINLI-VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 498
G K +S D+ + VSV ++G IP E + +IF+PF ++T GTG
Sbjct: 261 -----GENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFT-----TKTQ-GTG 309
Query: 499 IGLSISKYLV 508
+GLSI + ++
Sbjct: 310 LGLSICRKII 319
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 21/143 (14%)
Query: 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
+K+LIV+DN +N+K+ L+ G + G A + ++ D MDIQ+PE+ G
Sbjct: 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSI-ARENKPDLILMDIQLPEISG 60
Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
E TK ++E + H+P++A+TA ++ E G +
Sbjct: 61 LEVTKWLKE--------------------DDDLAHIPVVAVTAFAMKGDEERIREGGCEA 100
Query: 830 YVSKPFEAEQLYREVSRFFPPIP 852
Y+SKP + R P
Sbjct: 101 YISKPISVVHFLETIKRLLERQP 123
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 23/123 (18%)
Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
IL+VDD+ +N ++ A L G G A +L H D D+ MP MDG+
Sbjct: 11 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH-IDIVLSDVNMPNMDGYR 69
Query: 772 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
T+ IR++ +P++ +TA+ + + CL SGMD +
Sbjct: 70 LTQRIRQL----------------------GLTLPVIGVTANALAEEKQRCLESGMDSCL 107
Query: 832 SKP 834
SKP
Sbjct: 108 SKP 110
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Query: 699 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 758
P + R + ++L+ DD+ N V L++ G V+CV ++ + M +DA
Sbjct: 4 PFLRHRARVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDA-MAEEDYDAV 62
Query: 759 FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
+D+ MP M+G + K +R M+ + + P++ ++ADV
Sbjct: 63 IVDLHMPGMNGLDMLKQLRVMQAS------------------GMRYTPVVVLSADVTPEA 104
Query: 819 YEECLRSGMDGYVSKPFEAEQL 840
C ++G +++KP A +L
Sbjct: 105 IRACEQAGARAFLAKPVVAAKL 126
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF--DACFMDIQMP 765
+ +K+L+VDD+ V K+ + LK+ G V+ E G+ A E L +F D +DI MP
Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL---SEFTPDLIVLDIMMP 57
Query: 766 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 825
MDGF K ++E E +R +P++ +TA + L
Sbjct: 58 VMDGFTVLKKLQEKEE-----WKR---------------IPVIVLTAKGGEEDESLALSL 97
Query: 826 GMDGYVSKPFEAEQLYREVSRFF 848
G + KPF Q EV
Sbjct: 98 GARKVMRKPFSPSQFIEEVKHLL 120
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 24/137 (17%)
Query: 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
+ +KIL+VDD + L++ G V C G +A E++ Q D +DI +P
Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV-EELQPDLILLDIMLPNK 59
Query: 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
DG E + +R+ + +PI+ +TA + L G
Sbjct: 60 DGVEVCREVRK-----------------------KYDMPIIMLTAKDSEIDKVIGLEIGA 96
Query: 828 DGYVSKPFEAEQLYREV 844
D YV+KPF +L V
Sbjct: 97 DDYVTKPFSTRELLARV 113
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 24/137 (17%)
Query: 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
+ +KIL+VDD + L++ G V C G +A E++ Q D +DI +P
Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV-EELQPDLILLDIMLPNK 59
Query: 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
DG E + +R+ + +PI+ +TA + L G
Sbjct: 60 DGVEVCREVRK-----------------------KYDMPIIMLTAKDSEIDKVIGLEIGA 96
Query: 828 DGYVSKPFEAEQLYREV 844
D YV+KPF +L V
Sbjct: 97 DDYVTKPFSTRELLARV 113
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
+KILIVDD + + + G VV G++A E Q D +D+ +PE+DG
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQF-EAEQPDIIILDLMLPEIDG 60
Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
E K IR+ VPIL ++A + L G D
Sbjct: 61 LEVAKTIRKTS-----------------------SVPILMLSAKDSEFDKVIGLELGADD 97
Query: 830 YVSKPFEAEQLYREV 844
YV+KPF +L V
Sbjct: 98 YVTKPFSNRELQARV 112
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 25/143 (17%)
Query: 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF--DACFMDIQMP 765
+ +K+L+VDD+ V K+ + LK+ G V+ E G+ A E L +F D + I MP
Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL---SEFTPDLIVLXIMMP 57
Query: 766 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 825
MDGF K ++E E +R +P++ +TA + L
Sbjct: 58 VMDGFTVLKKLQEKEE-----WKR---------------IPVIVLTAKGGEEDESLALSL 97
Query: 826 GMDGYVSKPFEAEQLYREVSRFF 848
G + KPF Q EV
Sbjct: 98 GARKVMRKPFSPSQFIEEVKHLL 120
>pdb|1R62|A Chain A, Crystal Structure Of The C-terminal Domain Of The
Two-component System Transmitter Protein Nrii (ntrb)
Length = 160
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 462 VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 521
+ VED G GIP Q +F P +S GGTG+GLSI++ L+ + G+I F S P
Sbjct: 94 IDVEDNGPGIPPHLQDTLFYPM------VSGREGGTGLGLSIARNLIDQHSGKIEFTSWP 147
Query: 522 N 522
Sbjct: 148 G 148
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 21/143 (14%)
Query: 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768
G K+L++D+N V+ V L G V V ++ ++ H+ FMD+ MP ++
Sbjct: 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVV--SHEHKVVFMDVCMPGVE 64
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL-AMTADVIQATYEECLRSGM 827
++ +R E R +R P+L A++ + ++T E+C+ G+
Sbjct: 65 NYQIA--LRIHEKFTKQRHQR----------------PLLVALSGNTDKSTKEKCMSFGL 106
Query: 828 DGYVSKPFEAEQLYREVSRFFPP 850
DG + KP + + +S P
Sbjct: 107 DGVLLKPVSLDNIRDVLSDLLEP 129
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 557 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINM 610
S F G+K LV+D + V++ + LG +V VS +CL ++ K++ M
Sbjct: 3 SNFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHKVVFM 56
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 21/131 (16%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
K+L+VDD++ ++ L R G V+ E G +A E L D MPEM+G
Sbjct: 7 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 66
Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
+ K +R ++R + +PI+ +TA+ +A L++G++
Sbjct: 67 LDLVKKVRS-----DSRFK---------------EIPIIMITAEGGKAEVITALKAGVNN 106
Query: 830 YVSKPFEAEQL 840
Y+ KPF + L
Sbjct: 107 YIVKPFTPQVL 117
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 24/135 (17%)
Query: 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
+KILIVDD + + + G VV G++A E Q D + + +PE+DG
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQF-EAEQPDIIILXLMLPEIDG 60
Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
E K IR+ VPIL ++A + L G D
Sbjct: 61 LEVAKTIRKTS-----------------------SVPILMLSAKDSEFDKVIGLELGADD 97
Query: 830 YVSKPFEAEQLYREV 844
YV+KPF +L V
Sbjct: 98 YVTKPFSNRELQARV 112
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
K+L+VDD++ ++ L R G V+ E G +A E L D MPEM+G
Sbjct: 7 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 66
Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
+ K +R ++R + +PI+ +T + +A L++G++
Sbjct: 67 LDLVKKVRS-----DSRFK---------------EIPIIMITTEGGKAEVITALKAGVNN 106
Query: 830 YVSKPFEAEQL 840
Y+ KPF + L
Sbjct: 107 YIVKPFTPQVL 117
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
Length = 244
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV-TQQDYVRTAQASGKALVSLINEVLD 317
A + A++SHEIR P+ G + ++ + L ++ Y R A ++I + L
Sbjct: 13 AVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLT 72
Query: 318 QAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFR 377
AK E V + ++D + L + D LA P ++IG+ +FR
Sbjct: 73 FAKPAPETPEKLNVKLEIERVIDILRPLANMSCVDIQATLA-------PFSVIGEREKFR 125
Query: 378 QIITNLMGNSIKFTEKG---HIFVTV 400
Q + N+M N+I+ G ++V++
Sbjct: 126 QCLLNVMKNAIEAMPNGGTLQVYVSI 151
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 22/139 (15%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL-LMPPHQFDACFMDIQMPEMDG 769
KILIVDD + ++ L+ G E T L ++ FD D MP M G
Sbjct: 14 KILIVDDFSTMRRIVKNLLRDLGFNNT-QEADDGLTALPMLKKGDFDFVVTDWNMPGMQG 72
Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
+ K IR E E+ H+P+L +TA+ + E ++G++G
Sbjct: 73 IDLLKNIRADE----------ELK----------HLPVLMITAEAKREQIIEAAQAGVNG 112
Query: 830 YVSKPFEAEQLYREVSRFF 848
Y+ KPF A L ++ + F
Sbjct: 113 YIVKPFTAATLKEKLDKIF 131
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 23/128 (17%)
Query: 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
+ +KIL+VDD + + L+R G V+ G++A + + D +D+ +P++
Sbjct: 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKK-AETEKPDLIVLDVMLPKL 60
Query: 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
DG E K +R+ + F PIL +TA + L G
Sbjct: 61 DGIEVCKQLRQQKLMF----------------------PILMLTAKDEEFDKVLGLELGA 98
Query: 828 DGYVSKPF 835
D Y++KPF
Sbjct: 99 DDYMTKPF 106
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDDN+ ++ LK G VE + + L + + D MP MD
Sbjct: 3 KFLVVDDNSTMRRITRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 60
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 61 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 100
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 101 GYVVKPFTAATLEEKLNKIF 120
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDDN+ ++ LK G VE + + L + + D MP MD
Sbjct: 3 KFLVVDDNSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 60
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L TA+ + ++G
Sbjct: 61 GLELLKTIRA----------DGAMSA----------LPVLMTTAEAKKENIIAAAQAGAS 100
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 101 GYVVKPFTAATLEEKLNKIF 120
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
K+L+VDD++ ++ L R G V+ E G +A E L MPEM+G
Sbjct: 7 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITAWNMPEMNG 66
Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
+ K +R ++R + +PI+ +T + +A L++G++
Sbjct: 67 LDLVKKVRS-----DSRFK---------------EIPIIMITTEGGKAEVITALKAGVNN 106
Query: 830 YVSKPFEAEQL 840
Y+ KPF + L
Sbjct: 107 YIVKPFTPQVL 117
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + F D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGFGFIICDWNMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR + ++ A +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIR------------ADSAMSA--------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDGGTGRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 26/141 (18%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF-DACFMDIQMPEMDG 769
+IL+VDD N+++ A L V G T L M D +D+ MP MDG
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGP--TALAMAARDLPDIILLDVMMPGMDG 60
Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
F + R+++ + R H+P++ +TA + + L SG
Sbjct: 61 F---TVCRKLKDDPTTR-----------------HIPVVLITALDGRGDRIQGLESGASD 100
Query: 830 YVSKPFEAEQLY---REVSRF 847
+++KP + L+ R ++RF
Sbjct: 101 FLTKPIDDVMLFARVRSLTRF 121
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 27/140 (19%)
Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQM 764
L+G++ILIV+D V + + GA V G A ELL P D DI M
Sbjct: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP---DLMICDIAM 61
Query: 765 PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 824
P M+G ++ +EH N RG+ P+L ++A A + LR
Sbjct: 62 PRMNG------LKLLEHIRN----RGD------------QTPVLVISATENMADIAKALR 99
Query: 825 SGMDGYVSKPFEAEQLYREV 844
G++ + KP + RE+
Sbjct: 100 LGVEDVLLKPVKDLNRLREM 119
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 32/144 (22%)
Query: 708 LGRKILIVDDN---NVNLK--VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 762
+G+++LIVDD + LK + AG + G A E +K EL + D MDI
Sbjct: 1 MGKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL-----KPDIVTMDI 55
Query: 763 QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 822
MPEM+G +A K I +++ N I+ +A QA E
Sbjct: 56 TMPEMNGIDAIKEIMKIDPN----------------------AKIIVCSAMGQQAMVIEA 93
Query: 823 LRSGMDGYVSKPFEAEQLYREVSR 846
+++G ++ KPF+ ++ +++
Sbjct: 94 IKAGAKDFIVKPFQPSRVVEALNK 117
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + F D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGFGFIISDWNMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR + ++ A +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIR------------ADSAMSA--------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + F D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMD 64
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR + ++ A +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIR------------ADSAMSA--------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 26/141 (18%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF-DACFMDIQMPEMDG 769
+IL+VDD N+++ A L V G T L M D +D+ MP MDG
Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGP--TALAMAARDLPDIILLDVMMPGMDG 61
Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
F + R+++ + R H+P++ +TA + + L SG
Sbjct: 62 F---TVCRKLKDDPTTR-----------------HIPVVLITALDGRGDRIQGLESGASD 101
Query: 830 YVSKPFEAEQLY---REVSRF 847
+++KP + L+ R ++RF
Sbjct: 102 FLTKPIDDVMLFARVRSLTRF 122
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 8 KFLVVDDFSTGRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 65
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 66 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 105
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 106 GYVVKPFTAATLEEKLNKIF 125
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D +MP MD
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWRMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAHAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D +MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWRMPNMD 64
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 32/143 (22%)
Query: 709 GRKILIVDDN---NVNLK--VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 763
G+++LIVDD + LK + AG + G A E +K EL + D MDI
Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL-----KPDIVTMDIT 55
Query: 764 MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 823
MPEM+G +A K I +++ N I+ +A QA E +
Sbjct: 56 MPEMNGIDAIKEIMKIDPN----------------------AKIIVCSAMGQQAMVIEAI 93
Query: 824 RSGMDGYVSKPFEAEQLYREVSR 846
++G ++ KPF+ ++ +++
Sbjct: 94 KAGAKDFIVKPFQPSRVVEALNK 116
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEADAENIKALAQAGAS 104
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 23/130 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
++L+V+DN + ++ G V E K+A + + H D +D+ +P+ DG
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLPDEDGL 60
Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
+IR R R +VS+ PIL +TA E L +G D Y
Sbjct: 61 S---LIR--------RWRSNDVSL-----------PILVLTARESWQDKVEVLSAGADDY 98
Query: 831 VSKPFEAEQL 840
V+KPF E++
Sbjct: 99 VTKPFHIEEV 108
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENVIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D +MP MD
Sbjct: 6 KFLVVDDQSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWKMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAYAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTARAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR ++ A +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIR------------AXXAMSA--------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWMMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTARAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPNMD 67
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA + ++G
Sbjct: 68 GLELLKTIRA----------DGAMSA----------LPVLMVTAQAKKENIIAAAQAGAS 107
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 108 GYVVKPFTAATLEEKLNKIF 127
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 26/138 (18%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
KI +VDD+ LK + L++ G V+ + L F +D+ +P+ G+
Sbjct: 4 KIAVVDDDKNILKKVSEKLQQLGR----VKTFLTGEDFLNDEEAFHVVVLDVXLPDYSGY 59
Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
E + I+E R E V +L + +D + + +G D Y
Sbjct: 60 EICRXIKET---------RPET-----------WVILLTLLSD--DESVLKGFEAGADDY 97
Query: 831 VSKPFEAEQLYREVSRFF 848
V+KPF E L V RF
Sbjct: 98 VTKPFNPEILLARVKRFL 115
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPNMD 67
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA + ++G
Sbjct: 68 GLELLKTIRA----------DGAMSA----------LPVLMVTAKAKKENIIAAAQAGAS 107
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 108 GYVVKPFTAATLEEKLNKIF 127
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 26/138 (18%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
KI +VDD+ LK + L++ G V+ + L F +D+ +P+ G+
Sbjct: 4 KIAVVDDDKNILKKVSEKLQQLGR----VKTFLTGEDFLNDEEAFHVVVLDVXLPDYSGY 59
Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
E + I+E R E V +L + +D + + +G D Y
Sbjct: 60 EICRXIKET---------RPET-----------WVILLTLLSD--DESVLKGFEAGADDY 97
Query: 831 VSKPFEAEQLYREVSRFF 848
V+KPF E L V RF
Sbjct: 98 VTKPFNPEILLARVKRFL 115
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWMMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTALAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPNMD 67
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA + ++G
Sbjct: 68 GLELLKTIRA----------DGAMSA----------LPVLMVTARAKKENIIAAAQAGAS 107
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 108 GYVVKPFTAATLEEKLNKIF 127
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +T++ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTSEAKKENIIAAAQAGAS 104
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
G+V KPF A L ++++ F
Sbjct: 104 GWVVKPFTAATLEEKLNKIF 123
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWDMPNMD 67
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA + ++G
Sbjct: 68 GLELLKTIRA----------DGAMSA----------LPVLMVTAYAKKENIIAAAQAGAS 107
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 108 GYVVKPFTAATLEEKLNKIF 127
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +T + + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTTEAKKENIIAAAQAGAS 104
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +T + + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTVEAKKENIIAAAQAGAS 104
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 761 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
D MP MDG E K IR G +S +P+L +TA+ +
Sbjct: 56 DWNMPNMDGLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENII 95
Query: 821 ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
++G GYV KPF A L ++++ F
Sbjct: 96 AAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF L ++++ F
Sbjct: 104 GYVVKPFTPATLEEKLNKIF 123
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 25/135 (18%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
++L+V+D + LK+ V VC + + L P FD +DI +P DG
Sbjct: 4 RVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEP--FDVVILDIXLPVHDG 61
Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
+E K RE S + P+L +TA + L G D
Sbjct: 62 WEILKSXRE----------------------SGVNTPVLXLTALSDVEYRVKGLNXGADD 99
Query: 830 YVSKPFEAEQLYREV 844
Y+ KPF+ +L V
Sbjct: 100 YLPKPFDLRELIARV 114
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 761 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
D MP MDG E K IR G +S +P+L +TA+ +
Sbjct: 56 DWNMPNMDGLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENII 95
Query: 821 ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
++G GYV KPF A L ++++ F
Sbjct: 96 AAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 761 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
D MP MDG E K IR G +S +P+L +TA+ +
Sbjct: 55 DWNMPNMDGLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENII 94
Query: 821 ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
++G GYV KPF A L ++++ F
Sbjct: 95 AAAQAGASGYVVKPFTAATLEEKLNKIF 122
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF L ++++ F
Sbjct: 105 GYVVKPFTPATLEEKLNKIF 124
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +T + + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTMEAKKENIIAAAQAGAS 104
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L + A+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVIAEAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 761 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
D MP MDG E K IR G +S +P+L +TA+ +
Sbjct: 58 DWNMPNMDGLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENII 97
Query: 821 ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
++G GYV KPF A L ++++ F
Sbjct: 98 AAAQAGASGYVVKPFTAATLEEKLNKIF 125
>pdb|1JM6|A Chain A, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|1JM6|B Chain B, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|3CRK|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex
Length = 407
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 459 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT-----GIGLSISKYLVGRMKG 513
+L + + D G G+PL R+F+ P+ GGT G GL IS+ +G
Sbjct: 283 DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQG 342
Query: 514 EIGFVSIPNIGS 525
++ S+ G+
Sbjct: 343 DLQLFSMEGFGT 354
>pdb|2BTZ|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU2|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU5|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU6|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU7|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU8|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
Length = 394
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 459 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT-----GIGLSISKYLVGRMKG 513
+L + + D G G+PL R+F+ P+ GGT G GL IS+ +G
Sbjct: 270 DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQG 329
Query: 514 EIGFVSIPNIGS 525
++ S+ G+
Sbjct: 330 DLQLFSMEGFGT 341
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 37.4 bits (85), Expect = 0.039, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 25/135 (18%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDG 769
++L+V+D + LK+ V VC + + L P FD +DI +P DG
Sbjct: 4 RVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDG 61
Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
+E K +RE S + P+L +TA + L G D
Sbjct: 62 WEILKSMRE----------------------SGVNTPVLMLTALSDVEYRVKGLNMGADD 99
Query: 830 YVSKPFEAEQLYREV 844
Y+ KPF+ +L V
Sbjct: 100 YLPKPFDLRELIARV 114
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 37.0 bits (84), Expect = 0.048, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 37.0 bits (84), Expect = 0.050, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNMD 64
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 36.6 bits (83), Expect = 0.062, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISAWNMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3A0T|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) In
Complex With Adp And Mg Ion (Trigonal)
pdb|3A0W|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0W|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0X|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 1: Ammomium Phosphate, Monoclinic)
pdb|3A0Y|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Y|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Z|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
pdb|3A0Z|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
Length = 152
Score = 36.6 bits (83), Expect = 0.068, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 445 GSTSPFKSSSADLINLI-VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSI 503
G K +S D+ + VSV ++G IP E + +IF+PF ++T GTG+GLSI
Sbjct: 64 GENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFT-----TKTQ-GTGLGLSI 117
Query: 504 SKYLV 508
+ ++
Sbjct: 118 CRKII 122
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 328 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 387
+E FNL ++ +V LF K + ++ + +D + D R +Q++ NL+ N+
Sbjct: 1 MEFTEFNLNELIREVYVLFEEKIRKMNIDFC-FETDNEDLRVEADRTRIKQVLINLVQNA 59
Query: 388 IKFT-EKGHIFVT 399
I+ T E G I +T
Sbjct: 60 IEATGENGKIKIT 72
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 36.2 bits (82), Expect = 0.089, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
L +KILIV+D+ K A L +YG V G+ A E + D MDI++ E
Sbjct: 3 LKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGE 62
Query: 767 -MDGFEATKIIREM 779
MDG + I+++
Sbjct: 63 GMDGVQTALAIQQI 76
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 35.8 bits (81), Expect = 0.093, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L + A+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVIAEAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
G+V KPF A L ++++ F
Sbjct: 104 GWVVKPFTAATLEEKLNKIF 123
>pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|A Chain A, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|A Chain A, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|B Chain B, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|E Chain E, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|F Chain F, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 419
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 459 NLIVSVEDTGQGIPLEAQSRIF------TPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 512
+L + + D G G+PL R+F P + P+ + G G GL IS+ +
Sbjct: 293 DLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQ 352
Query: 513 GEIGFVSIPNIGS 525
G++ S+ +G+
Sbjct: 353 GDLKLYSMEGVGT 365
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 23/125 (18%)
Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
+LI+DD+ V + AA L+ V+ G + ++ Q D D++ P++DG E
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQI-FESEQPDLVICDLRXPQIDGLE 66
Query: 772 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
+ IR+ + PI+ ++ + + E LR G Y+
Sbjct: 67 LIRRIRQ----------------------TASETPIIVLSGAGVMSDAVEALRLGAADYL 104
Query: 832 SKPFE 836
KP E
Sbjct: 105 IKPLE 109
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 23/125 (18%)
Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
+LI+DD+ V + AA L+ V+ G + ++ Q D D++ P++DG E
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQI-FESEQPDLVICDLRXPQIDGLE 66
Query: 772 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
+ IR+ PI+ ++ + + E LR G Y+
Sbjct: 67 LIRRIRQTAS----------------------ETPIIVLSGAGVXSDAVEALRLGAADYL 104
Query: 832 SKPFE 836
KP E
Sbjct: 105 IKPLE 109
>pdb|1BXD|A Chain A, Nmr Structure Of The Histidine Kinase Domain Of The E.
Coli Osmosensor Envz
Length = 161
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 464 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKG 513
VED G GI E + +F PF++ G S +RT GTG+GL+I + +V G
Sbjct: 82 VEDDGPGIAPEQRKHLFQPFVR-GDS-ARTISGTGLGLAIVQRIVDNHNG 129
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
+L+++D+ V + L G V ERGK+A +LL H F+ + + +P+++G E
Sbjct: 3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH-FNVVLLXLLLPDVNGLE 61
Query: 772 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831
K I+E R E + + AM + C+ ++ +
Sbjct: 62 ILKWIKE---------RSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTI 112
Query: 832 SKPFEAEQLYRE 843
+K E +L +E
Sbjct: 113 NKAIEHRKLRKE 124
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 29/142 (20%)
Query: 701 MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760
MSL+ ++IL+VDD+ LKR V G A L F+ M
Sbjct: 1 MSLKQ---SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKL---STFEPAIM 54
Query: 761 --DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
D+ MP++DG + +IR + N V+N P + + + + +A
Sbjct: 55 TLDLSMPKLDGLD---VIRSLRQN----------------KVAN--QPKILVVSGLDKAK 93
Query: 819 YEECLRSGMDGYVSKPFEAEQL 840
++ + G D Y+ KPF+ + L
Sbjct: 94 LQQAVTEGADDYLEKPFDNDAL 115
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 30/133 (22%)
Query: 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPE 766
++IL+VDD+ ++ L+ G + G +A L P D +D+ +P
Sbjct: 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP----DLVLLDLMLPG 61
Query: 767 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG 826
M+G + +++R ++ VPI+ +TA L SG
Sbjct: 62 MNGIDVCRVLR-----------------------ADSGVPIVMLTAKTDTVDVVLGLESG 98
Query: 827 MDGYVSKPFEAEQ 839
D Y+ KPF+ ++
Sbjct: 99 ADDYIMKPFKPKE 111
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L + A+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVIAEAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex
pdb|2ZKJ|B Chain B, Crystal Structure Of Human Pdk4-Adp Complex
pdb|3D2R|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
pdb|3D2R|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
Length = 394
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 459 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGP------SISRTHGGTGIGLSISKYLVGRMK 512
+L + + D G G+PL R+F+ P S + G G GL IS+ +
Sbjct: 269 DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQ 328
Query: 513 GEIGFVSIPNIGS 525
G++ S+ G+
Sbjct: 329 GDLNLYSLSGYGT 341
>pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2E0A|B Chain B, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2ZDX|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDX|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
Length = 394
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 459 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGP------SISRTHGGTGIGLSISKYLVGRMK 512
+L + + D G G+PL R+F+ P S + G G GL IS+ +
Sbjct: 269 DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQ 328
Query: 513 GEIGFVSIPNIGS 525
G++ S+ G+
Sbjct: 329 GDLNLYSLSGYGT 341
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 31/147 (21%)
Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
++ KILIVDD + + + G G +A +++ D +D+++P
Sbjct: 1 MMNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLDMKIPG 59
Query: 767 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQATYEEC 822
MDG E K ++ ++ N + ++ MTA D+IQ + E
Sbjct: 60 MDGIEILKRMKVIDEN----------------------IRVIIMTAYGELDMIQESKE-- 95
Query: 823 LRSGMDGYVSKPFEAEQLYREVSRFFP 849
G + +KPF+ +++ V ++ P
Sbjct: 96 --LGALTHFAKPFDIDEIRDAVKKYLP 120
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 56/143 (39%), Gaps = 29/143 (20%)
Query: 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMPEMD 768
R++LI +D + A L+ G +V G++A EL H+ D MD++MP D
Sbjct: 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVEL-AELHKPDLVIMDVKMPRRD 72
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G +A A E S PI+ +TA + E +G
Sbjct: 73 GIDA-----------------------ASEIASKRIAPIVVLTAFSQRDLVERARDAGAM 109
Query: 829 GYVSKPFEAEQLYR----EVSRF 847
Y+ KPF L VSRF
Sbjct: 110 AYLVKPFSISDLIPAIELAVSRF 132
>pdb|3SY8|A Chain A, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|B Chain B, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|C Chain C, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|D Chain D, Crystal Structure Of The Response Regulator Rocr
Length = 400
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 26/141 (18%)
Query: 712 ILIVDDNNVNLKVAAAGLKRY-GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
+L+++D VA LK+ +++ GK+A +L D D+QM MDG
Sbjct: 6 VLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDLQMSGMDGL 65
Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI--QATYE--ECLRSG 826
+R +S H IL+ D I QAT ECL
Sbjct: 66 AF--------------LRHASLS-------GKVHSVILSSEVDPILRQATISMIECLGLN 104
Query: 827 MDGYVSKPFEAEQLYREVSRF 847
G + KPF E++ ++R+
Sbjct: 105 FLGDLGKPFSLERITALLTRY 125
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 31/147 (21%)
Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
++ KILIVDD + + G G +A +++ D +D+++P
Sbjct: 1 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLDMKIPG 59
Query: 767 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQATYEEC 822
MDG E K ++ ++ N + ++ MTA D+IQ + E
Sbjct: 60 MDGIEIAKRMKVIDEN----------------------IRVIIMTAYGELDMIQESKE-- 95
Query: 823 LRSGMDGYVSKPFEAEQLYREVSRFFP 849
G + +KPF+ +++ V ++ P
Sbjct: 96 --LGALTHFAKPFDIDEIRDAVKKYLP 120
>pdb|2Q8F|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1
pdb|2Q8G|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Glucose-Lowering Drug Azd7545
pdb|2Q8H|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Dichloroacetate (Dca)
Length = 407
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 459 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGP------SISRTHGGTGIGLSISKYLVGRMK 512
+L V + D G G+PL R+F P S + G G GL IS+ +
Sbjct: 282 DLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQ 341
Query: 513 GEIGFVSIPNIGS 525
G++ S+ G+
Sbjct: 342 GDLKLYSLEGYGT 354
>pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bond Conformation Of
Phoq Kinase Domain
Length = 152
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 459 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEI 515
+L + VED G GIPL + IF G + G G+GL++++ + + +G+I
Sbjct: 74 HLYIVVEDDGPGIPLSKREVIFDR----GQRVDTLRPGQGVGLAVAREITEQYEGKI 126
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 33.1 bits (74), Expect = 0.59, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 31/147 (21%)
Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
++ KILIVDD + + G G +A +++ D +D+++P
Sbjct: 3 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLDMKIPG 61
Query: 767 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQATYEEC 822
MDG E K ++ ++ N + ++ MTA D+IQ + E
Sbjct: 62 MDGIEILKRMKVIDEN----------------------IRVIIMTAYGELDMIQESKE-- 97
Query: 823 LRSGMDGYVSKPFEAEQLYREVSRFFP 849
G + +KPF+ +++ V ++ P
Sbjct: 98 --LGALTHFAKPFDIDEIRDAVKKYLP 122
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 33.1 bits (74), Expect = 0.61, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 31/147 (21%)
Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
++ KILIVDD + + G G +A +++ D +D+++P
Sbjct: 1 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLDMKIPG 59
Query: 767 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQATYEEC 822
MDG E K ++ ++ N + ++ MTA D+IQ + E
Sbjct: 60 MDGIEILKRMKVIDEN----------------------IRVIIMTAYGELDMIQESKE-- 95
Query: 823 LRSGMDGYVSKPFEAEQLYREVSRFFP 849
G + +KPF+ +++ V ++ P
Sbjct: 96 --LGALTHFAKPFDIDEIRDAVKKYLP 120
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 27/131 (20%)
Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVC----VERGKKATELLMPPHQFDACFMDI 762
L +++L+V+DN ++ + L R + C V+ G KA + ++D +DI
Sbjct: 3 LRSKRVLVVEDNPDDIALIRRVLDR--KDIHCQLEFVDNGAKALYQVQQA-KYDLIILDI 59
Query: 763 QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 822
+P +GFE +R+ +N H PI+ +T +V ++C
Sbjct: 60 GLPIANGFEVXSAVRKPG--------------------ANQHTPIVILTDNVSDDRAKQC 99
Query: 823 LRSGMDGYVSK 833
+G V K
Sbjct: 100 XAAGASSVVDK 110
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 768
K L+VDD + ++ LK G VE + + L + + MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNMD 63
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G E K IR G +S +P+L + A+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVIAEAKKENIIAAAQAGAS 103
Query: 829 GYVSKPFEAEQLYREVSRFF 848
G+V KPF A L ++++ F
Sbjct: 104 GWVVKPFTAATLEEKLNKIF 123
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 33.1 bits (74), Expect = 0.68, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 51/131 (38%), Gaps = 25/131 (19%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
++L+VDD +++ + LK G V G +A + DA +D+ P DGF
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP-DAVILDVXXPGXDGF 83
Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA-DVIQATYEECLRSGMDG 829
+ +R P L +TA D +Q L G D
Sbjct: 84 GVLRRLR----------------------ADGIDAPALFLTARDSLQDKIAG-LTLGGDD 120
Query: 830 YVSKPFEAEQL 840
YV+KPF E++
Sbjct: 121 YVTKPFSLEEV 131
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 31/143 (21%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
KILIVDD + + + G G +A +++ D +D+++P MDG
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLDMKIPGMDGI 61
Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQATYEECLRSG 826
E K ++ ++ N + ++ MTA D+IQ + E G
Sbjct: 62 EILKRMKVIDEN----------------------IRVIIMTAYGELDMIQESKE----LG 95
Query: 827 MDGYVSKPFEAEQLYREVSRFFP 849
+ +KPF+ +++ V ++ P
Sbjct: 96 ALTHFAKPFDIDEIRDAVKKYLP 118
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 25/135 (18%)
Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 769
IL+VDD+ + V L+R G + G++ E L PP D +DI DG
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEALNATPP---DLVLLDIXXEPXDG 62
Query: 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829
+E + I+ + + +P+L +TA + S ++
Sbjct: 63 WETLERIKT--------------------DPATRDIPVLXLTAKPLTPEEANEYGSYIED 102
Query: 830 YVSKPFEAEQLYREV 844
Y+ KP QLY +
Sbjct: 103 YILKPTTHHQLYEAI 117
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 26/138 (18%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA---CFMDIQMPEM 767
++L+VDD+ + A L++ ++ V A E L Q A +D PE+
Sbjct: 126 EVLVVDDSRTSRHRTXAQLRK---QLLQVHEASHAREALATLEQHPAIRLVLVDYYXPEI 182
Query: 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
DG + +R E S + I+ ++ + L+ G
Sbjct: 183 DGISLVRXLR--------------------ERYSKQQLAIIGISVSDKRGLSARYLKQGA 222
Query: 828 DGYVSKPFEAEQLYREVS 845
+ ++++PFE E+L VS
Sbjct: 223 NDFLNQPFEPEELQCRVS 240
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 711 KILIVDDNNVNLKV------AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 764
++L+VDD+ V + +K G A +E +KA EL + D MDI+M
Sbjct: 27 RVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL-----KPDVITMDIEM 81
Query: 765 PEMDGFEATKII 776
P ++G EA K+I
Sbjct: 82 PNLNGIEALKLI 93
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 21/138 (15%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 770
+ILIV+D+ + L+ G V G++A L D D+ MPEMDG+
Sbjct: 9 EILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP-DLIISDVLMPEMDGY 67
Query: 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830
+ + +G+ + + + IL+ DV+++ L G D +
Sbjct: 68 ALCRWL------------KGQPDL---RTIPVILLTILSDPRDVVRS-----LECGADDF 107
Query: 831 VSKPFEAEQLYREVSRFF 848
++KP + L V R
Sbjct: 108 ITKPCKDVVLASHVKRLL 125
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 24/137 (17%)
Query: 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
L KILI+D + N + L+ G ++ ++A + +++D F++I + +
Sbjct: 3 LQTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS-NKYDLIFLEIILSDG 61
Query: 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
DG+ K IR NV+ PI+ T + L SG
Sbjct: 62 DGWTLCKKIR---------------------NVTT--CPIVYXTYINEDQSILNALNSGG 98
Query: 828 DGYVSKPFEAEQLYREV 844
D Y+ KP E LY +V
Sbjct: 99 DDYLIKPLNLEILYAKV 115
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 23/93 (24%)
Query: 759 FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818
+D+ +P+ G + K+++E H RR P++ +T Q
Sbjct: 64 LLDLNLPDXTGIDILKLVKENPHT-----RRS---------------PVVILTTTDDQRE 103
Query: 819 YEECLRSGMDGYVSKPFEAEQL---YREVSRFF 848
+ C G + Y++KP E R++ FF
Sbjct: 104 IQRCYDLGANVYITKPVNYENFANAIRQLGLFF 136
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 22/75 (29%)
Query: 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
+G+++LIVDD A G + VE+ K+ L P D MDI MPEM
Sbjct: 1 MGKRVLIVDD-------ATNGRE-------AVEKYKE----LKP----DIVTMDITMPEM 38
Query: 768 DGFEATKIIREMEHN 782
+G +A K I +++ N
Sbjct: 39 NGIDAIKEIMKIDPN 53
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 31/147 (21%)
Query: 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766
++ KILIVDD + + + G G +A +++ D + +++P
Sbjct: 1 MMNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLXMKIPG 59
Query: 767 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQATYEEC 822
MDG E K ++ ++ N + ++ MTA D+IQ + E
Sbjct: 60 MDGIEILKRMKVIDEN----------------------IRVIIMTAYGELDMIQESKE-- 95
Query: 823 LRSGMDGYVSKPFEAEQLYREVSRFFP 849
G + +KPF+ +++ V ++ P
Sbjct: 96 --LGALTHFAKPFDIDEIRDAVKKYLP 120
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 22/89 (24%)
Query: 756 DACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815
DA +DI MP +DG +R M+++ VP+ ++A
Sbjct: 53 DAIVLDINMPVLDGVSVVTALRAMDND----------------------VPVCVLSARSS 90
Query: 816 QATYEECLRSGMDGYVSKPFEAEQLYREV 844
L +G D Y+ KPF +L V
Sbjct: 91 VDDRVAGLEAGADDYLVKPFVLAELVARV 119
>pdb|1WP6|A Chain A, Crystal Structure Of Maltohexaose-producing Amylase From
Alkalophilic Bacillus Sp.707.
pdb|1WPC|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase
Complexed With Pseudo-Maltononaose
pdb|2D3L|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltopentaose.
pdb|2D3N|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltohexaose
Length = 485
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 758 CFMDIQMPEMDGFEATKIIREMEHNFNNRIRR--GEVSIEAY 797
+ D+ M G +AT+++R +E N NNR + GE +IEA+
Sbjct: 99 VYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAW 140
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 20/88 (22%)
Query: 761 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820
D P DG E K IR G S +P+L +TA+ +
Sbjct: 56 DWNXPNXDGLELLKTIRA----------DGAXSA----------LPVLXVTAEAKKENII 95
Query: 821 ECLRSGMDGYVSKPFEAEQLYREVSRFF 848
++G G+V KPF A L ++++ F
Sbjct: 96 AAAQAGASGWVVKPFTAATLEEKLNKIF 123
>pdb|3CGY|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGZ|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
Length = 157
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 79/205 (38%), Gaps = 62/205 (30%)
Query: 338 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 397
+LD+++S + Q KGV +++ IS + + +G+ F +++ N++ N+ K+ + F
Sbjct: 14 LLDNLISALNKVYQRKGVNISMDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE---F 68
Query: 398 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 457
V + S++ T D H +
Sbjct: 69 VEI-----------------SARQT------DDHLHIF---------------------- 83
Query: 458 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 517
VED G GIP +S +F G G G+GL++++ + + G+I
Sbjct: 84 ------VEDDGPGIPHSKRSLVFDR----GQRADTLRPGQGVGLAVAREITEQYAGQI-- 131
Query: 518 VSIPNIGSTFTFTAVFGNGSSTSNE 542
++ ++ VFG T E
Sbjct: 132 IASDSLLGGARMEVVFGRQHPTQKE 156
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 21/133 (15%)
Query: 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
+ R+IL+V+D ++ L++ G V E A L P D +D +P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLP-- 57
Query: 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
G + I+ ++ R +P++ +TA + L +G
Sbjct: 58 -GGSGIQFIKHLKRESMTR-----------------DIPVVMLTARGEEEDRVRGLETGA 99
Query: 828 DGYVSKPFEAEQL 840
D Y++KPF ++L
Sbjct: 100 DDYITKPFSPKEL 112
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 21/133 (15%)
Query: 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767
+ R+IL+V+D ++ L++ G V E A L P D +D +P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLP-- 57
Query: 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 827
G + I+ ++ R +P++ +TA + L +G
Sbjct: 58 -GGSGIQFIKHLKRESMTR-----------------DIPVVMLTARGEEEDRVRGLETGA 99
Query: 828 DGYVSKPFEAEQL 840
D Y++KPF ++L
Sbjct: 100 DDYITKPFSPKEL 112
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 771
+L+++D+ V + L G V ERGK+A +LL H F+ +D+ +P+++G E
Sbjct: 3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH-FNVVLLDLLLPDVNGLE 61
Query: 772 ATKIIRE 778
K I+E
Sbjct: 62 ILKWIKE 68
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 29.6 bits (65), Expect = 8.4, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 24/140 (17%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMP-PHQFDACFMDIQMPEMD 768
K+LIVDD + + L++ G + G++ +++ PH D MP+MD
Sbjct: 8 KVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHL--VISDFNMPKMD 65
Query: 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 828
G + +R N + + +TA +A ++ G +
Sbjct: 66 GLGLLQAVR--------------------ANPATKKAAFIILTAQGDRALVQKAAALGAN 105
Query: 829 GYVSKPFEAEQLYREVSRFF 848
++KPF E++ + F
Sbjct: 106 NVLAKPFTIEKMKAAIEAVF 125
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 29.3 bits (64), Expect = 10.0, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL-LMPPHQFDACFMDIQMPEMDG 769
++++ DD+ + + L G+ V E A L L+ H D +D +MP MDG
Sbjct: 17 RVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDG 76
Query: 770 FEATKIIREME 780
+ +R E
Sbjct: 77 AQVAAAVRSYE 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,427,896
Number of Sequences: 62578
Number of extensions: 947244
Number of successful extensions: 2433
Number of sequences better than 100.0: 143
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 2229
Number of HSP's gapped (non-prelim): 161
length of query: 856
length of database: 14,973,337
effective HSP length: 107
effective length of query: 749
effective length of database: 8,277,491
effective search space: 6199840759
effective search space used: 6199840759
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)