Query 003018
Match_columns 856
No_of_seqs 733 out of 4565
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 15:24:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11107 hybrid sensory histid 100.0 4.6E-62 1E-66 611.7 69.0 506 250-851 283-788 (919)
2 PRK10841 hybrid sensory kinase 100.0 3.8E-61 8.2E-66 594.5 62.1 488 244-850 431-919 (924)
3 KOG0519 Sensory transduction h 100.0 1.3E-63 2.9E-68 600.5 15.4 767 48-849 4-785 (786)
4 TIGR02956 TMAO_torS TMAO reduc 100.0 5.1E-56 1.1E-60 560.0 55.6 369 250-849 454-822 (968)
5 PRK11091 aerobic respiration c 100.0 1.9E-56 4.2E-61 550.6 49.2 373 249-851 272-646 (779)
6 PRK15347 two component system 100.0 2.5E-55 5.3E-60 551.0 59.6 427 246-848 384-810 (921)
7 PRK11466 hybrid sensory histid 100.0 2.5E-54 5.4E-59 541.3 51.8 369 246-850 430-800 (914)
8 PRK09959 hybrid sensory histid 100.0 1E-49 2.2E-54 512.6 51.4 382 241-849 693-1075(1197)
9 PRK10618 phosphotransfer inter 100.0 3.4E-47 7.3E-52 464.0 46.2 240 244-534 434-673 (894)
10 PRK13837 two-component VirA-li 100.0 1E-44 2.3E-49 447.5 50.9 363 259-850 449-814 (828)
11 COG5002 VicK Signal transducti 100.0 5.4E-42 1.2E-46 353.9 17.6 226 256-535 221-450 (459)
12 PRK13557 histidine kinase; Pro 100.0 7.9E-38 1.7E-42 368.9 46.1 369 259-852 162-537 (540)
13 PRK09303 adaptive-response sen 100.0 2.2E-37 4.7E-42 349.4 33.4 243 237-534 128-378 (380)
14 COG2205 KdpD Osmosensitive K+ 100.0 6.2E-38 1.3E-42 356.8 28.7 225 254-536 654-882 (890)
15 PRK11006 phoR phosphate regulo 100.0 6.7E-34 1.4E-38 326.8 29.4 221 258-534 202-424 (430)
16 PRK10604 sensor protein RstB; 100.0 8.8E-33 1.9E-37 317.6 35.9 229 245-535 197-425 (433)
17 PRK10815 sensor protein PhoQ; 100.0 9.1E-32 2E-36 312.6 36.6 220 253-534 259-479 (485)
18 TIGR02938 nifL_nitrog nitrogen 100.0 7.6E-32 1.7E-36 313.5 31.2 215 259-533 275-494 (494)
19 PRK10549 signal transduction h 100.0 4.8E-31 1E-35 306.0 35.7 236 244-535 224-460 (466)
20 PRK10490 sensor protein KdpD; 100.0 5.1E-31 1.1E-35 325.3 32.9 223 255-535 659-884 (895)
21 PRK10364 sensor protein ZraS; 100.0 2.7E-30 5.9E-35 299.2 36.2 213 259-535 236-450 (457)
22 PRK10755 sensor protein BasS/P 100.0 3.9E-30 8.6E-35 288.0 34.5 227 245-534 122-351 (356)
23 PRK09835 sensor kinase CusS; P 100.0 8.5E-30 1.9E-34 296.7 37.2 232 245-533 247-480 (482)
24 TIGR03785 marine_sort_HK prote 100.0 8.1E-30 1.8E-34 307.8 36.6 230 247-532 472-703 (703)
25 TIGR01386 cztS_silS_copS heavy 100.0 1.1E-29 2.3E-34 293.4 34.9 230 245-532 226-457 (457)
26 COG4251 Bacteriophytochrome (l 100.0 1.2E-30 2.7E-35 288.2 24.7 236 244-538 508-746 (750)
27 PRK09470 cpxA two-component se 100.0 2.4E-29 5.2E-34 291.1 37.0 231 245-534 228-458 (461)
28 COG3852 NtrB Signal transducti 100.0 3.5E-30 7.6E-35 263.6 24.6 223 257-535 129-356 (363)
29 PRK09467 envZ osmolarity senso 100.0 6.5E-29 1.4E-33 285.6 33.8 222 244-534 213-434 (435)
30 PRK10337 sensor protein QseC; 100.0 8.1E-29 1.8E-33 286.1 34.6 225 246-531 223-449 (449)
31 COG4191 Signal transduction hi 100.0 6.8E-28 1.5E-32 267.9 38.4 211 261-533 385-601 (603)
32 TIGR02966 phoR_proteo phosphat 100.0 3.5E-29 7.5E-34 275.8 28.2 218 259-531 113-333 (333)
33 PRK11100 sensory histidine kin 100.0 1.2E-27 2.6E-32 277.6 35.3 218 259-533 255-473 (475)
34 PRK11073 glnL nitrogen regulat 100.0 4.7E-28 1E-32 270.1 27.6 217 259-533 129-347 (348)
35 COG0642 BaeS Signal transducti 100.0 2.8E-26 6E-31 250.5 31.5 217 259-535 114-331 (336)
36 PRK11360 sensory histidine kin 100.0 1.7E-26 3.6E-31 275.4 29.3 214 259-535 389-603 (607)
37 PRK13560 hypothetical protein; 99.9 7.2E-26 1.6E-30 280.2 25.5 213 243-534 588-804 (807)
38 TIGR02916 PEP_his_kin putative 99.9 7E-25 1.5E-29 265.8 29.0 203 259-532 474-679 (679)
39 PRK11086 sensory histidine kin 99.9 2.9E-23 6.4E-28 245.3 24.0 194 260-535 339-537 (542)
40 PRK11644 sensory histidine kin 99.9 4.1E-22 9E-27 231.9 30.6 195 257-533 299-494 (495)
41 PRK15053 dpiB sensor histidine 99.9 3.6E-22 7.8E-27 236.6 26.9 196 262-535 340-541 (545)
42 COG5000 NtrY Signal transducti 99.9 2.4E-22 5.3E-27 222.5 21.2 211 259-533 485-708 (712)
43 COG4192 Signal transduction hi 99.9 3.6E-20 7.8E-25 197.9 25.4 210 261-533 452-666 (673)
44 PF03924 CHASE: CHASE domain; 99.8 3.5E-21 7.7E-26 196.7 12.1 162 2-172 26-192 (193)
45 COG0745 OmpR Response regulato 99.8 1.7E-20 3.6E-25 195.4 16.9 118 711-851 2-119 (229)
46 PRK13559 hypothetical protein; 99.8 1.2E-19 2.6E-24 203.6 20.8 187 258-534 168-360 (361)
47 PF02518 HATPase_c: Histidine 99.8 3.6E-20 7.8E-25 171.5 12.8 109 371-533 1-110 (111)
48 PRK10935 nitrate/nitrite senso 99.8 1.2E-17 2.5E-22 198.9 26.9 193 262-534 362-560 (565)
49 COG3290 CitA Signal transducti 99.8 5.3E-17 1.2E-21 180.6 23.5 194 262-535 335-533 (537)
50 PRK09581 pleD response regulat 99.7 1.1E-16 2.4E-21 184.8 24.1 257 563-847 4-271 (457)
51 PRK10600 nitrate/nitrite senso 99.7 6.2E-16 1.3E-20 184.3 29.9 181 272-534 374-557 (569)
52 COG2204 AtoC Response regulato 99.7 2.2E-17 4.7E-22 184.5 15.0 117 710-849 5-121 (464)
53 PF00072 Response_reg: Respons 99.7 4.4E-17 9.4E-22 150.4 13.7 111 712-845 1-112 (112)
54 COG3437 Response regulator con 99.7 2.3E-17 5E-22 174.9 12.4 120 709-848 14-133 (360)
55 COG0784 CheY FOG: CheY-like re 99.7 1.5E-16 3.2E-21 150.9 15.8 119 709-850 5-126 (130)
56 COG4753 Response regulator con 99.7 6.5E-17 1.4E-21 180.2 13.4 117 710-849 2-121 (475)
57 COG3706 PleD Response regulato 99.7 1.1E-15 2.4E-20 169.6 19.2 123 708-851 131-253 (435)
58 COG4565 CitB Response regulato 99.7 5.3E-16 1.1E-20 153.1 13.3 115 711-848 2-118 (224)
59 PRK10547 chemotaxis protein Ch 99.7 7.7E-15 1.7E-19 173.3 24.6 146 333-535 343-525 (670)
60 COG2197 CitB Response regulato 99.7 1.5E-15 3.2E-20 156.9 15.5 118 711-851 2-121 (211)
61 COG4566 TtrR Response regulato 99.6 1.4E-15 3E-20 147.2 13.5 117 710-849 5-121 (202)
62 PLN03029 type-a response regul 99.6 6.9E-15 1.5E-19 153.5 15.3 119 709-847 8-145 (222)
63 PRK10046 dpiA two-component re 99.6 3.8E-14 8.3E-19 148.4 16.5 115 710-847 5-121 (225)
64 PRK10529 DNA-binding transcrip 99.6 6E-14 1.3E-18 146.0 16.9 116 711-850 3-118 (225)
65 PRK04184 DNA topoisomerase VI 99.6 5.2E-14 1.1E-18 160.7 17.3 117 369-535 30-154 (535)
66 PRK11173 two-component respons 99.6 9E-14 2E-18 146.3 16.9 117 710-850 4-120 (237)
67 PRK10816 DNA-binding transcrip 99.5 1.3E-13 2.8E-18 143.5 16.7 117 711-850 2-118 (223)
68 PRK09836 DNA-binding transcrip 99.5 1.6E-13 3.4E-18 143.2 16.9 117 711-850 2-118 (227)
69 PRK09468 ompR osmolarity respo 99.5 2.2E-13 4.7E-18 143.4 17.5 119 709-850 5-123 (239)
70 PRK10643 DNA-binding transcrip 99.5 2E-13 4.3E-18 141.4 16.5 116 711-849 2-117 (222)
71 COG3947 Response regulator con 99.5 3.1E-14 6.8E-19 145.7 10.0 115 711-850 2-116 (361)
72 PRK10766 DNA-binding transcrip 99.5 1.9E-13 4.1E-18 141.8 16.0 116 710-849 3-118 (221)
73 PRK10430 DNA-binding transcrip 99.5 1.8E-13 3.9E-18 144.7 15.9 115 711-847 3-120 (239)
74 PRK10701 DNA-binding transcrip 99.5 2.8E-13 6.1E-18 142.7 16.2 116 711-850 3-118 (240)
75 PRK10161 transcriptional regul 99.5 3.3E-13 7.2E-18 140.9 16.5 120 710-850 3-122 (229)
76 PRK13856 two-component respons 99.5 2.9E-13 6.2E-18 143.0 16.0 116 711-850 3-119 (241)
77 PRK10955 DNA-binding transcrip 99.5 3.6E-13 7.9E-18 140.6 16.5 114 711-849 3-116 (232)
78 TIGR02154 PhoB phosphate regul 99.5 4E-13 8.6E-18 139.3 16.2 120 710-850 3-122 (226)
79 PRK11517 transcriptional regul 99.5 6.2E-13 1.3E-17 138.0 16.9 116 711-850 2-117 (223)
80 TIGR02875 spore_0_A sporulatio 99.5 4.8E-13 1E-17 143.4 16.3 120 710-850 3-124 (262)
81 PRK10336 DNA-binding transcrip 99.5 5.5E-13 1.2E-17 137.8 16.2 116 711-849 2-117 (219)
82 TIGR03787 marine_sort_RR prote 99.5 4.9E-13 1.1E-17 139.4 15.9 117 710-849 1-119 (227)
83 smart00387 HATPase_c Histidine 99.5 7.3E-13 1.6E-17 120.4 14.4 109 371-533 1-110 (111)
84 TIGR01387 cztR_silR_copR heavy 99.5 1.1E-12 2.3E-17 135.5 16.4 116 712-850 1-116 (218)
85 COG4567 Response regulator con 99.5 9.8E-13 2.1E-17 122.2 13.4 115 710-847 10-124 (182)
86 PRK11083 DNA-binding response 99.5 1.6E-12 3.5E-17 135.1 16.9 118 710-850 4-121 (228)
87 PRK10840 transcriptional regul 99.5 1.1E-12 2.4E-17 136.3 15.5 118 710-850 4-126 (216)
88 CHL00148 orf27 Ycf27; Reviewed 99.4 2.8E-12 6E-17 134.7 16.2 116 710-849 7-122 (240)
89 PRK09958 DNA-binding transcrip 99.4 2.9E-12 6.3E-17 131.1 15.9 117 711-850 2-119 (204)
90 PRK14084 two-component respons 99.4 2.5E-12 5.5E-17 136.3 15.9 113 711-848 2-116 (246)
91 PRK10923 glnG nitrogen regulat 99.4 2E-12 4.3E-17 150.6 16.3 117 710-849 4-120 (469)
92 PRK11361 acetoacetate metaboli 99.4 2.6E-12 5.7E-17 149.1 16.7 118 709-849 4-121 (457)
93 PRK15115 response regulator Gl 99.4 1.9E-12 4.2E-17 149.6 14.8 117 710-849 6-122 (444)
94 PRK09483 response regulator; P 99.4 4.4E-12 9.6E-17 131.1 15.6 117 711-850 3-121 (217)
95 KOG0519 Sensory transduction h 99.4 2.2E-12 4.9E-17 156.9 15.1 402 248-685 374-784 (786)
96 TIGR02915 PEP_resp_reg putativ 99.4 2.6E-12 5.7E-17 148.5 14.8 113 712-849 1-118 (445)
97 PF00512 HisKA: His Kinase A ( 99.4 2E-12 4.2E-17 108.5 9.8 66 259-324 1-68 (68)
98 PRK10360 DNA-binding transcrip 99.4 5.6E-12 1.2E-16 128.1 15.1 114 711-850 3-118 (196)
99 PRK09935 transcriptional regul 99.4 7.5E-12 1.6E-16 128.3 16.1 118 710-850 4-123 (210)
100 PRK12555 chemotaxis-specific m 99.4 3.9E-12 8.5E-17 141.5 15.1 115 711-849 2-129 (337)
101 PRK10365 transcriptional regul 99.4 2.5E-12 5.3E-17 148.6 14.0 116 710-848 6-121 (441)
102 PRK11697 putative two-componen 99.4 4.8E-12 1E-16 133.3 14.5 114 710-849 2-117 (238)
103 PRK10710 DNA-binding transcrip 99.4 1.2E-11 2.5E-16 129.9 17.0 116 710-849 11-126 (240)
104 TIGR01818 ntrC nitrogen regula 99.4 4.1E-12 9E-17 147.7 14.7 114 712-848 1-114 (463)
105 COG3614 Predicted periplasmic 99.4 3.8E-12 8.1E-17 132.5 11.5 136 5-142 102-247 (348)
106 PRK15479 transcriptional regul 99.4 1.6E-11 3.5E-16 126.9 16.2 116 711-849 2-117 (221)
107 PRK14868 DNA topoisomerase VI 99.3 7.7E-12 1.7E-16 145.4 14.9 126 351-531 21-159 (795)
108 TIGR01052 top6b DNA topoisomer 99.3 5.3E-12 1.2E-16 142.9 13.0 112 369-533 22-140 (488)
109 PRK00742 chemotaxis-specific m 99.3 2E-11 4.4E-16 136.8 16.0 114 710-847 4-130 (354)
110 PRK10100 DNA-binding transcrip 99.3 1.8E-11 3.9E-16 126.9 14.2 114 709-850 10-127 (216)
111 PRK11475 DNA-binding transcrip 99.3 1.8E-11 4E-16 125.8 13.5 106 722-850 3-115 (207)
112 PRK09390 fixJ response regulat 99.3 3.2E-11 7E-16 122.1 13.9 117 710-849 4-120 (202)
113 cd00075 HATPase_c Histidine ki 99.3 3.3E-11 7.1E-16 107.7 12.3 101 376-531 1-103 (103)
114 COG2201 CheB Chemotaxis respon 99.3 1.9E-11 4.1E-16 132.1 12.2 102 711-836 3-108 (350)
115 PRK14867 DNA topoisomerase VI 99.3 2.2E-11 4.8E-16 141.8 13.6 114 370-535 28-151 (659)
116 COG3707 AmiR Response regulato 99.3 2.7E-11 5.8E-16 118.7 11.1 112 710-845 6-118 (194)
117 PRK09581 pleD response regulat 99.3 6.6E-11 1.4E-15 136.7 16.5 117 711-848 4-120 (457)
118 TIGR01925 spIIAB anti-sigma F 99.3 4.5E-11 9.7E-16 115.0 12.6 98 371-531 35-136 (137)
119 PRK13435 response regulator; P 99.3 9.7E-11 2.1E-15 113.4 15.0 114 709-849 5-120 (145)
120 PRK10651 transcriptional regul 99.2 2.4E-10 5.1E-15 117.5 15.9 118 710-850 7-126 (216)
121 PRK13558 bacterio-opsin activa 99.2 7.8E-11 1.7E-15 143.3 14.2 116 710-848 8-125 (665)
122 PRK15369 two component system 99.2 2.5E-10 5.5E-15 116.2 15.8 118 710-850 4-123 (211)
123 PRK10403 transcriptional regul 99.2 2.9E-10 6.2E-15 116.6 15.8 117 710-849 7-125 (215)
124 PRK10610 chemotaxis regulatory 99.2 5.9E-10 1.3E-14 103.0 16.3 119 710-849 6-125 (129)
125 PRK15411 rcsA colanic acid cap 99.2 3.4E-10 7.4E-15 116.8 14.5 116 711-850 2-123 (207)
126 PRK03660 anti-sigma F factor; 99.2 3.3E-10 7.2E-15 110.1 13.2 101 372-535 36-140 (146)
127 COG0643 CheA Chemotaxis protei 99.1 5.9E-09 1.3E-13 124.3 24.9 141 336-535 393-575 (716)
128 PRK09191 two-component respons 99.1 7.7E-10 1.7E-14 118.2 15.3 114 710-849 138-253 (261)
129 PRK10693 response regulator of 99.1 7.3E-10 1.6E-14 121.3 11.9 89 738-849 2-91 (303)
130 COG3851 UhpB Signal transducti 99.0 1.3E-07 2.9E-12 100.0 26.9 193 258-532 301-493 (497)
131 COG4585 Signal transduction hi 99.0 1.5E-07 3.3E-12 106.0 29.0 122 340-533 244-365 (365)
132 cd00156 REC Signal receiver do 99.0 4E-09 8.7E-14 93.3 13.0 112 713-847 1-112 (113)
133 COG3920 Signal transduction hi 99.0 1.9E-07 4.1E-12 97.0 24.5 194 259-535 18-217 (221)
134 COG3850 NarQ Signal transducti 98.9 8.5E-07 1.8E-11 99.1 26.8 184 265-532 374-567 (574)
135 PRK04069 serine-protein kinase 98.8 4.4E-08 9.5E-13 97.0 14.0 103 372-535 39-145 (161)
136 PRK15029 arginine decarboxylas 98.8 2.5E-08 5.3E-13 119.5 12.7 106 711-839 2-121 (755)
137 COG2972 Predicted signal trans 98.8 3.9E-06 8.4E-11 97.4 29.1 65 459-534 386-453 (456)
138 COG3279 LytT Response regulato 98.7 4.7E-08 1E-12 103.3 10.6 112 711-847 3-116 (244)
139 smart00388 HisKA His Kinase A 98.6 1.8E-07 3.9E-12 76.5 8.6 65 260-324 2-66 (66)
140 COG3275 LytS Putative regulato 98.6 1E-05 2.2E-10 89.2 23.8 129 331-535 415-553 (557)
141 TIGR01924 rsbW_low_gc serine-p 98.6 5.8E-07 1.3E-11 88.7 12.8 101 373-534 40-144 (159)
142 COG4564 Signal transduction hi 98.5 6.2E-05 1.4E-09 79.3 24.9 184 270-534 261-448 (459)
143 KOG0787 Dehydrogenase kinase [ 98.5 2.2E-05 4.7E-10 84.3 21.2 183 295-533 174-380 (414)
144 PF14501 HATPase_c_5: GHKL dom 98.4 4.5E-06 9.8E-11 75.6 12.8 94 372-533 2-99 (100)
145 PRK11107 hybrid sensory histid 98.3 4.5E-06 9.7E-11 105.6 14.9 118 706-848 533-650 (919)
146 cd00082 HisKA Histidine Kinase 98.2 7.7E-06 1.7E-10 66.2 7.9 62 259-320 3-65 (65)
147 COG3706 PleD Response regulato 98.1 2.7E-06 6E-11 95.3 5.7 91 734-849 13-103 (435)
148 COG3452 Predicted periplasmic 98.1 2.6E-05 5.7E-10 79.9 11.3 82 54-144 119-200 (297)
149 TIGR00585 mutl DNA mismatch re 98.1 3E-05 6.5E-10 85.3 12.2 97 374-530 21-125 (312)
150 COG1389 DNA topoisomerase VI, 97.8 4.2E-05 9.1E-10 84.0 8.0 115 372-534 33-151 (538)
151 PF13581 HATPase_c_2: Histidin 97.7 0.00025 5.5E-09 66.7 11.1 93 372-530 28-124 (125)
152 COG2172 RsbW Anti-sigma regula 96.9 0.0076 1.6E-07 58.4 10.9 90 372-524 37-131 (146)
153 smart00448 REC cheY-homologous 96.9 0.0048 1E-07 45.9 7.7 54 711-765 2-55 (55)
154 PRK00095 mutL DNA mismatch rep 96.8 0.0058 1.3E-07 73.4 11.0 87 375-521 22-114 (617)
155 PF00072 Response_reg: Respons 96.6 0.015 3.2E-07 52.9 9.9 110 564-681 1-111 (112)
156 PF06490 FleQ: Flagellar regul 96.6 0.017 3.6E-07 53.2 10.0 106 711-847 1-107 (109)
157 COG0745 OmpR Response regulato 96.5 0.025 5.5E-07 59.3 11.9 118 562-687 1-118 (229)
158 PF13589 HATPase_c_3: Histidin 96.1 0.005 1.1E-07 59.2 3.6 67 461-532 35-106 (137)
159 PRK05559 DNA topoisomerase IV 95.8 0.018 4E-07 69.1 7.4 90 372-521 34-138 (631)
160 COG2204 AtoC Response regulato 95.1 0.14 3.1E-06 58.6 11.2 177 562-747 5-209 (464)
161 PRK15347 two component system 94.9 0.25 5.3E-06 62.8 14.0 121 560-686 689-811 (921)
162 PRK11091 aerobic respiration c 94.7 0.36 7.8E-06 60.2 14.3 194 560-777 524-718 (779)
163 PRK05644 gyrB DNA gyrase subun 94.7 0.062 1.4E-06 64.6 7.1 89 366-510 26-131 (638)
164 TIGR01055 parE_Gneg DNA topois 94.6 0.045 9.7E-07 65.6 5.6 50 461-510 63-124 (625)
165 PRK14083 HSP90 family protein; 94.6 0.022 4.9E-07 67.6 3.0 57 461-521 64-127 (601)
166 PLN03029 type-a response regul 94.6 0.26 5.7E-06 51.4 10.8 120 560-683 7-144 (222)
167 cd02071 MM_CoA_mut_B12_BD meth 94.4 1 2.2E-05 42.2 13.3 107 716-845 10-121 (122)
168 TIGR02956 TMAO_torS TMAO reduc 94.1 0.29 6.3E-06 62.6 11.9 121 560-686 701-822 (968)
169 PRK02261 methylaspartate mutas 93.9 1.9 4.2E-05 41.3 14.3 118 709-849 3-135 (137)
170 TIGR01059 gyrB DNA gyrase, B s 93.9 0.1 2.2E-06 63.3 6.8 29 372-400 27-58 (654)
171 COG0784 CheY FOG: CheY-like re 93.5 1 2.2E-05 41.7 11.6 118 560-684 4-123 (130)
172 PRK10841 hybrid sensory kinase 93.3 0.49 1.1E-05 60.0 11.6 119 559-685 799-917 (924)
173 PTZ00272 heat shock protein 83 92.6 0.086 1.9E-06 63.6 3.4 20 461-480 73-92 (701)
174 PRK11466 hybrid sensory histid 92.6 0.59 1.3E-05 59.4 11.2 120 560-686 680-799 (914)
175 PF03709 OKR_DC_1_N: Orn/Lys/A 92.6 0.63 1.4E-05 43.2 8.5 95 723-840 7-103 (115)
176 PRK05218 heat shock protein 90 92.3 0.44 9.5E-06 57.3 8.8 57 461-521 74-142 (613)
177 PRK00742 chemotaxis-specific m 92.2 11 0.00024 42.1 19.7 105 561-673 3-110 (354)
178 PRK13837 two-component VirA-li 91.8 2.6 5.6E-05 53.0 15.3 119 560-687 696-814 (828)
179 PRK12555 chemotaxis-specific m 91.7 8 0.00017 43.0 17.7 116 562-685 1-128 (337)
180 TIGR02154 PhoB phosphate regul 91.4 2 4.3E-05 43.8 11.7 119 562-686 3-121 (226)
181 PRK10161 transcriptional regul 91.3 2.1 4.4E-05 44.1 11.7 119 562-686 3-121 (229)
182 cd02067 B12-binding B12 bindin 91.2 2.1 4.7E-05 39.6 10.5 95 716-834 10-110 (119)
183 COG5381 Uncharacterized protei 91.0 0.55 1.2E-05 44.3 6.0 28 377-404 65-92 (184)
184 COG4999 Uncharacterized domain 90.8 1.8 3.9E-05 39.7 8.8 117 706-849 8-127 (140)
185 TIGR01818 ntrC nitrogen regula 90.6 1.4 3E-05 51.3 10.6 155 564-733 1-155 (463)
186 PTZ00130 heat shock protein 90 90.6 0.32 6.9E-06 59.1 5.2 48 461-508 136-194 (814)
187 PRK10955 DNA-binding transcrip 90.1 2.8 6.2E-05 43.0 11.4 114 563-686 3-116 (232)
188 PRK09468 ompR osmolarity respo 89.9 3.5 7.5E-05 42.8 12.0 119 561-687 5-123 (239)
189 COG3437 Response regulator con 89.8 1.5 3.3E-05 48.1 9.0 117 560-681 13-129 (360)
190 PRK09836 DNA-binding transcrip 89.4 3.5 7.6E-05 42.3 11.4 117 562-686 1-117 (227)
191 PRK11173 two-component respons 89.2 3.6 7.8E-05 42.7 11.5 116 562-686 4-119 (237)
192 smart00433 TOP2c Topoisomerase 89.2 0.45 9.7E-06 57.1 5.0 49 461-509 34-94 (594)
193 TIGR03815 CpaE_hom_Actino heli 88.6 2 4.3E-05 47.5 9.4 85 733-848 1-86 (322)
194 PRK10643 DNA-binding transcrip 88.6 4.4 9.5E-05 41.2 11.4 117 562-686 1-117 (222)
195 PRK15399 lysine decarboxylase 88.5 1.9 4.2E-05 52.3 9.7 97 711-832 2-104 (713)
196 PRK10336 DNA-binding transcrip 88.2 6 0.00013 40.1 12.1 117 562-686 1-117 (219)
197 PRK10816 DNA-binding transcrip 87.8 5.2 0.00011 40.9 11.4 118 562-687 1-118 (223)
198 COG4566 TtrR Response regulato 87.1 3.6 7.8E-05 41.2 8.8 118 562-687 5-122 (202)
199 PRK11083 DNA-binding response 87.0 7.8 0.00017 39.5 12.2 117 562-686 4-120 (228)
200 CHL00148 orf27 Ycf27; Reviewed 87.0 7 0.00015 40.3 11.9 117 561-686 6-122 (240)
201 PRK10766 DNA-binding transcrip 87.0 6.2 0.00013 40.2 11.4 116 562-686 3-118 (221)
202 PRK11517 transcriptional regul 86.6 6.9 0.00015 39.8 11.5 116 562-686 1-116 (223)
203 PRK10701 DNA-binding transcrip 86.6 5.6 0.00012 41.3 10.9 115 563-686 3-117 (240)
204 PRK10529 DNA-binding transcrip 86.6 6.1 0.00013 40.4 11.1 116 562-686 2-117 (225)
205 PRK15400 lysine decarboxylase 85.8 3.1 6.8E-05 50.5 9.4 80 711-815 2-87 (714)
206 TIGR02875 spore_0_A sporulatio 85.8 7.1 0.00015 41.4 11.4 120 562-687 3-124 (262)
207 PRK13856 two-component respons 85.6 6.6 0.00014 40.9 10.9 116 563-686 3-118 (241)
208 PRK10430 DNA-binding transcrip 85.6 6.6 0.00014 41.1 10.9 117 562-684 2-120 (239)
209 COG4565 CitB Response regulato 85.6 3.8 8.3E-05 41.8 8.3 114 563-684 2-117 (224)
210 COG0323 MutL DNA mismatch repa 85.5 1.1 2.3E-05 54.1 5.3 27 461-487 54-80 (638)
211 PRK13435 response regulator; P 85.2 13 0.00029 35.1 12.0 115 561-686 5-120 (145)
212 TIGR03787 marine_sort_RR prote 84.5 11 0.00024 38.5 11.8 118 563-686 2-119 (227)
213 TIGR00640 acid_CoA_mut_C methy 84.5 19 0.00042 34.2 12.3 111 716-847 13-126 (132)
214 PRK15115 response regulator Gl 84.2 5.1 0.00011 46.3 10.1 118 561-686 5-122 (444)
215 PRK10840 transcriptional regul 84.0 11 0.00023 38.7 11.5 121 561-686 3-125 (216)
216 PRK09959 hybrid sensory histid 83.7 5.1 0.00011 52.7 10.8 118 561-686 958-1075(1197)
217 PRK10046 dpiA two-component re 83.2 13 0.00028 38.5 11.8 117 561-685 4-122 (225)
218 PRK09958 DNA-binding transcrip 83.2 7.6 0.00016 38.9 9.8 117 562-686 1-118 (204)
219 PRK10365 transcriptional regul 82.9 4.7 0.0001 46.5 9.1 118 561-686 5-122 (441)
220 PRK10923 glnG nitrogen regulat 82.7 7.2 0.00016 45.5 10.6 117 562-686 4-120 (469)
221 PRK14939 gyrB DNA gyrase subun 82.0 0.99 2.1E-05 55.1 3.0 35 366-400 25-65 (756)
222 PRK10610 chemotaxis regulatory 81.7 24 0.00052 31.1 11.7 119 561-685 5-124 (129)
223 cd04728 ThiG Thiazole synthase 81.7 14 0.00031 38.7 10.9 86 728-844 118-220 (248)
224 PHA02569 39 DNA topoisomerase 81.3 1.1 2.3E-05 53.7 3.0 51 461-511 80-144 (602)
225 PRK00208 thiG thiazole synthas 81.0 15 0.00033 38.5 10.8 86 727-843 117-219 (250)
226 COG4753 Response regulator con 80.5 5.1 0.00011 46.2 7.9 116 563-686 3-121 (475)
227 TIGR01501 MthylAspMutase methy 80.1 34 0.00075 32.6 12.1 108 718-848 14-132 (134)
228 COG0326 HtpG Molecular chapero 79.0 2.3 5E-05 50.2 4.5 48 460-508 74-133 (623)
229 PF02310 B12-binding: B12 bind 79.0 11 0.00024 34.7 8.4 92 719-834 14-112 (121)
230 PRK14084 two-component respons 78.9 15 0.00033 38.3 10.6 115 562-686 1-117 (246)
231 PRK10710 DNA-binding transcrip 78.8 29 0.00063 35.6 12.6 116 562-686 11-126 (240)
232 PRK09191 two-component respons 78.7 21 0.00046 37.5 11.8 115 562-686 138-253 (261)
233 TIGR01058 parE_Gpos DNA topois 78.3 1.2 2.6E-05 53.7 2.1 51 461-511 67-129 (637)
234 PRK09483 response regulator; P 78.3 16 0.00036 36.8 10.4 117 562-686 2-120 (217)
235 PRK11361 acetoacetate metaboli 78.0 11 0.00024 43.6 10.1 118 561-686 4-121 (457)
236 cd02070 corrinoid_protein_B12- 78.0 22 0.00047 36.4 11.0 101 709-833 82-191 (201)
237 TIGR01387 cztR_silR_copR heavy 77.8 15 0.00032 37.0 9.9 115 564-686 1-115 (218)
238 cd02072 Glm_B12_BD B12 binding 77.2 54 0.0012 31.1 12.3 104 719-845 13-127 (128)
239 PRK15479 transcriptional regul 77.1 19 0.0004 36.4 10.4 116 563-686 2-117 (221)
240 cd02069 methionine_synthase_B1 76.7 18 0.00038 37.5 9.9 104 710-836 89-204 (213)
241 COG3947 Response regulator con 75.5 17 0.00038 38.9 9.3 114 563-686 2-115 (361)
242 PRK10618 phosphotransfer inter 75.2 11 0.00024 47.7 9.4 38 556-593 684-721 (894)
243 PRK13557 histidine kinase; Pro 74.6 32 0.0007 40.3 13.0 121 559-686 413-534 (540)
244 PRK11697 putative two-componen 72.8 29 0.00063 35.9 10.7 114 562-686 2-117 (238)
245 COG2197 CitB Response regulato 71.6 35 0.00077 35.2 10.7 116 563-686 2-119 (211)
246 PF02254 TrkA_N: TrkA-N domain 70.2 50 0.0011 29.9 10.5 93 710-832 22-115 (116)
247 TIGR02915 PEP_resp_reg putativ 69.9 24 0.00051 40.8 10.0 116 564-686 1-118 (445)
248 TIGR03321 alt_F1F0_F0_B altern 69.0 1.6E+02 0.0035 31.1 17.4 36 352-390 174-209 (246)
249 PLN03237 DNA topoisomerase 2; 69.0 8.2 0.00018 50.2 6.2 53 461-513 112-176 (1465)
250 PRK10360 DNA-binding transcrip 67.2 35 0.00076 33.7 9.5 113 563-686 3-117 (196)
251 PRK09935 transcriptional regul 66.7 44 0.00096 33.3 10.2 118 561-686 3-122 (210)
252 PRK09390 fixJ response regulat 66.4 32 0.0007 33.7 9.1 117 562-686 4-120 (202)
253 cd00156 REC Signal receiver do 65.9 29 0.00062 29.0 7.6 110 566-683 2-111 (113)
254 COG4567 Response regulator con 65.3 41 0.00088 32.7 8.5 114 563-684 11-124 (182)
255 PF03602 Cons_hypoth95: Conser 64.4 11 0.00024 38.0 5.1 66 710-777 66-138 (183)
256 PTZ00109 DNA gyrase subunit b; 64.1 0.66 1.4E-05 56.8 -4.4 17 495-511 247-264 (903)
257 PF06490 FleQ: Flagellar regul 63.1 50 0.0011 30.2 8.7 33 563-595 1-33 (109)
258 cd05212 NAD_bind_m-THF_DH_Cycl 61.6 28 0.0006 33.5 7.0 54 707-766 26-83 (140)
259 PRK01130 N-acetylmannosamine-6 60.5 76 0.0017 32.8 10.8 84 724-832 109-201 (221)
260 PRK13111 trpA tryptophan synth 60.5 24 0.00051 37.8 7.0 57 768-846 75-137 (258)
261 COG4122 Predicted O-methyltran 60.0 30 0.00065 36.0 7.3 55 710-765 85-143 (219)
262 TIGR01334 modD putative molybd 59.8 41 0.00089 36.3 8.6 71 735-831 191-261 (277)
263 PRK10558 alpha-dehydro-beta-de 58.8 91 0.002 33.3 11.0 99 725-845 10-111 (256)
264 COG2185 Sbm Methylmalonyl-CoA 58.7 1.8E+02 0.0039 28.1 12.3 117 710-847 13-136 (143)
265 PRK00043 thiE thiamine-phospha 58.7 1.3E+02 0.0027 30.7 12.0 91 731-846 102-206 (212)
266 PRK09426 methylmalonyl-CoA mut 56.6 83 0.0018 38.8 11.5 110 716-848 593-707 (714)
267 TIGR00007 phosphoribosylformim 56.5 92 0.002 32.3 10.6 66 743-832 148-217 (230)
268 TIGR02370 pyl_corrinoid methyl 56.2 85 0.0018 32.0 10.0 98 711-832 86-192 (197)
269 PF01596 Methyltransf_3: O-met 54.8 37 0.00079 35.0 7.0 55 709-763 70-130 (205)
270 PRK00278 trpC indole-3-glycero 54.5 2.2E+02 0.0048 30.4 13.2 104 713-840 139-252 (260)
271 cd04726 KGPDC_HPS 3-Keto-L-gul 54.2 1.7E+02 0.0037 29.5 11.9 96 711-832 79-185 (202)
272 KOG1977 DNA mismatch repair pr 54.0 25 0.00055 41.8 6.1 44 459-502 49-98 (1142)
273 PRK10128 2-keto-3-deoxy-L-rham 54.0 1.3E+02 0.0027 32.4 11.2 99 725-845 9-110 (267)
274 PF10087 DUF2325: Uncharacteri 53.8 1.5E+02 0.0033 26.2 10.1 64 711-779 1-70 (97)
275 TIGR03239 GarL 2-dehydro-3-deo 52.8 1.5E+02 0.0033 31.4 11.5 85 739-845 19-104 (249)
276 COG0512 PabA Anthranilate/para 52.6 23 0.00049 35.8 4.8 52 710-762 2-53 (191)
277 PRK15369 two component system 51.7 1.2E+02 0.0026 29.7 10.4 118 561-686 3-122 (211)
278 PRK10651 transcriptional regul 51.7 1.2E+02 0.0026 30.0 10.4 118 561-686 6-125 (216)
279 cd04729 NanE N-acetylmannosami 51.7 1.8E+02 0.0038 30.0 11.7 82 727-833 116-206 (219)
280 PRK13587 1-(5-phosphoribosyl)- 51.6 93 0.002 32.7 9.6 67 743-832 151-220 (234)
281 PLN02591 tryptophan synthase 51.6 40 0.00088 35.8 6.9 45 803-847 77-127 (250)
282 PTZ00108 DNA topoisomerase 2-l 51.6 14 0.00031 48.2 4.0 51 461-511 95-157 (1388)
283 COG3707 AmiR Response regulato 50.9 63 0.0014 32.7 7.6 117 560-685 4-121 (194)
284 COG0187 GyrB Type IIA topoisom 50.8 2.1 4.5E-05 50.3 -3.2 51 461-511 69-131 (635)
285 TIGR00262 trpA tryptophan synt 50.0 48 0.001 35.4 7.2 57 768-846 73-135 (256)
286 PRK10669 putative cation:proto 49.8 1.9E+02 0.0041 34.6 13.1 109 709-850 440-549 (558)
287 cd04723 HisA_HisF Phosphoribos 49.5 1E+02 0.0022 32.3 9.6 67 742-832 148-217 (233)
288 CHL00162 thiG thiamin biosynth 49.1 1.9E+02 0.004 30.8 10.9 95 725-845 129-235 (267)
289 PF07568 HisKA_2: Histidine ki 48.8 1E+02 0.0022 26.2 7.6 72 267-347 2-73 (76)
290 TIGR02855 spore_yabG sporulati 48.5 95 0.0021 33.2 8.8 101 710-834 105-226 (283)
291 PLN03128 DNA topoisomerase 2; 48.5 26 0.00056 45.2 5.6 51 461-511 87-149 (1135)
292 cd00331 IGPS Indole-3-glycerol 48.3 2.3E+02 0.005 29.1 12.0 80 729-832 117-200 (217)
293 PRK10742 putative methyltransf 48.0 2.1E+02 0.0046 30.4 11.3 97 709-833 110-218 (250)
294 PF05582 Peptidase_U57: YabG p 47.9 1.4E+02 0.0029 32.2 9.9 101 710-834 106-227 (287)
295 PRK08385 nicotinate-nucleotide 47.5 1.7E+02 0.0037 31.6 10.9 96 711-831 156-257 (278)
296 PRK15029 arginine decarboxylas 47.4 1.1E+02 0.0023 38.1 10.4 72 562-634 1-81 (755)
297 PF11044 TMEMspv1-c74-12: Plec 47.3 1.2E+02 0.0025 22.9 6.4 29 209-237 5-33 (49)
298 PRK03659 glutathione-regulated 47.2 1.4E+02 0.0029 36.2 11.3 95 709-833 423-518 (601)
299 PRK13558 bacterio-opsin activa 47.2 63 0.0014 39.4 8.7 116 562-685 8-125 (665)
300 PRK05458 guanosine 5'-monophos 47.1 2.7E+02 0.0058 30.9 12.6 97 711-832 113-229 (326)
301 COG3105 Uncharacterized protei 46.6 2E+02 0.0043 27.1 9.4 29 207-235 3-31 (138)
302 cd02068 radical_SAM_B12_BD B12 46.5 1.6E+02 0.0035 27.3 9.5 105 720-848 3-111 (127)
303 PRK15411 rcsA colanic acid cap 46.4 2.2E+02 0.0047 29.2 11.2 116 563-686 2-122 (207)
304 PRK10403 transcriptional regul 46.2 1.7E+02 0.0036 28.9 10.4 116 562-685 7-124 (215)
305 cd04724 Tryptophan_synthase_al 45.9 58 0.0013 34.4 7.0 42 804-845 76-123 (242)
306 PRK13125 trpA tryptophan synth 45.8 2.1E+02 0.0046 30.1 11.3 89 721-834 117-215 (244)
307 COG0742 N6-adenine-specific me 45.5 69 0.0015 32.4 7.0 53 710-762 67-122 (187)
308 PRK07896 nicotinate-nucleotide 45.2 85 0.0018 34.1 8.2 71 735-831 202-272 (289)
309 PRK14471 F0F1 ATP synthase sub 43.9 3.2E+02 0.007 26.7 14.5 59 212-270 12-75 (164)
310 TIGR00693 thiE thiamine-phosph 42.9 1.6E+02 0.0035 29.5 9.7 70 737-831 101-178 (196)
311 PRK13428 F0F1 ATP synthase sub 42.9 4.3E+02 0.0094 30.7 14.1 63 211-273 4-71 (445)
312 PRK03562 glutathione-regulated 42.7 1.5E+02 0.0033 36.0 10.8 93 709-831 423-516 (621)
313 PRK06231 F0F1 ATP synthase sub 42.4 4E+02 0.0086 27.4 14.6 67 209-275 49-120 (205)
314 PF01729 QRPTase_C: Quinolinat 42.3 93 0.002 31.0 7.4 71 735-831 83-153 (169)
315 PRK06543 nicotinate-nucleotide 42.2 2E+02 0.0044 31.1 10.4 91 711-830 161-262 (281)
316 PRK12724 flagellar biosynthesi 41.8 2.6E+02 0.0056 32.2 11.6 108 709-836 252-370 (432)
317 KOG1979 DNA mismatch repair pr 41.8 34 0.00073 40.0 4.6 26 461-486 58-83 (694)
318 COG5385 Uncharacterized protei 41.7 3.6E+02 0.0078 26.7 17.3 121 263-400 18-139 (214)
319 PF01408 GFO_IDH_MocA: Oxidore 41.5 1.5E+02 0.0033 26.8 8.5 34 813-846 73-108 (120)
320 cd00452 KDPG_aldolase KDPG and 41.4 1.6E+02 0.0035 29.7 9.2 78 729-833 93-171 (190)
321 PRK07428 nicotinate-nucleotide 41.4 90 0.002 33.9 7.7 70 736-831 200-269 (288)
322 cd02065 B12-binding_like B12 b 41.0 1.3E+02 0.0027 27.6 7.9 62 716-778 10-75 (125)
323 PRK00811 spermidine synthase; 40.8 1.2E+02 0.0026 32.8 8.7 55 710-766 101-162 (283)
324 PF05690 ThiG: Thiazole biosyn 40.8 1.7E+02 0.0037 30.7 9.0 83 724-832 114-203 (247)
325 PF14689 SPOB_a: Sensor_kinase 40.7 1.2E+02 0.0026 24.6 6.6 43 263-309 15-57 (62)
326 COG0157 NadC Nicotinate-nucleo 40.5 1.1E+02 0.0023 33.0 7.8 93 711-830 160-259 (280)
327 PRK13453 F0F1 ATP synthase sub 39.8 3.9E+02 0.0085 26.5 14.4 59 214-272 24-87 (173)
328 TIGR02311 HpaI 2,4-dihydroxyhe 39.5 3E+02 0.0066 29.1 11.3 86 739-846 19-105 (249)
329 cd00564 TMP_TenI Thiamine mono 39.5 2.3E+02 0.0049 28.1 10.1 75 732-832 94-177 (196)
330 cd04730 NPD_like 2-Nitropropan 39.2 3.3E+02 0.0072 28.1 11.6 84 725-833 94-185 (236)
331 CHL00200 trpA tryptophan synth 38.6 79 0.0017 33.9 6.7 54 768-844 78-137 (263)
332 PRK10100 DNA-binding transcrip 38.5 2.4E+02 0.0052 29.1 10.2 116 561-686 10-126 (216)
333 PRK14974 cell division protein 37.6 3.3E+02 0.0071 30.4 11.6 107 709-836 168-290 (336)
334 PRK05848 nicotinate-nucleotide 37.6 2.5E+02 0.0055 30.3 10.3 70 736-831 186-255 (273)
335 PRK00748 1-(5-phosphoribosyl)- 37.1 1.2E+02 0.0026 31.5 7.8 66 743-832 149-219 (233)
336 PRK06096 molybdenum transport 37.0 1.2E+02 0.0026 32.9 7.8 71 735-831 192-262 (284)
337 smart00448 REC cheY-homologous 36.7 1.4E+02 0.003 20.5 7.1 50 563-614 2-51 (55)
338 PRK06731 flhF flagellar biosyn 36.7 4E+02 0.0087 28.6 11.7 107 710-836 104-222 (270)
339 cd04732 HisA HisA. Phosphorib 36.6 3.2E+02 0.007 28.2 11.0 65 744-832 150-218 (234)
340 PRK14474 F0F1 ATP synthase sub 36.4 5.5E+02 0.012 27.3 14.4 27 210-236 7-33 (250)
341 PRK11840 bifunctional sulfur c 36.2 3.9E+02 0.0085 29.5 11.5 92 728-845 192-295 (326)
342 COG0813 DeoD Purine-nucleoside 35.9 49 0.0011 34.1 4.3 24 369-392 19-42 (236)
343 PRK05458 guanosine 5'-monophos 35.0 1.1E+02 0.0023 34.0 7.2 67 742-831 99-166 (326)
344 PRK11889 flhF flagellar biosyn 34.9 4E+02 0.0088 30.6 11.6 108 709-836 269-388 (436)
345 PRK11677 hypothetical protein; 34.6 2.2E+02 0.0047 27.3 8.1 11 220-230 11-21 (134)
346 TIGR00064 ftsY signal recognit 34.4 3.8E+02 0.0082 28.8 11.2 109 709-832 100-224 (272)
347 TIGR00736 nifR3_rel_arch TIM-b 34.1 1.6E+02 0.0034 31.0 7.9 29 804-832 191-219 (231)
348 TIGR01163 rpe ribulose-phospha 33.6 3.5E+02 0.0076 27.3 10.5 92 721-833 92-193 (210)
349 TIGR00566 trpG_papA glutamine 32.9 1E+02 0.0022 31.1 6.2 48 712-760 2-49 (188)
350 KOG1978 DNA mismatch repair pr 31.7 43 0.00094 40.0 3.6 25 461-485 51-75 (672)
351 PF01564 Spermine_synth: Sperm 31.6 89 0.0019 33.1 5.7 68 710-778 101-179 (246)
352 PRK05703 flhF flagellar biosyn 31.4 3.6E+02 0.0077 31.1 11.0 109 709-836 251-368 (424)
353 PRK05282 (alpha)-aspartyl dipe 31.3 2.2E+02 0.0048 29.9 8.5 63 709-778 31-99 (233)
354 PRK07649 para-aminobenzoate/an 31.3 56 0.0012 33.3 4.0 49 712-761 2-50 (195)
355 PRK12704 phosphodiesterase; Pr 31.2 43 0.00093 39.6 3.5 43 806-848 251-295 (520)
356 cd00331 IGPS Indole-3-glycerol 31.1 1.7E+02 0.0037 30.0 7.7 43 804-846 72-116 (217)
357 TIGR03151 enACPred_II putative 31.0 3.3E+02 0.0072 29.8 10.2 83 725-832 101-189 (307)
358 PRK13461 F0F1 ATP synthase sub 31.0 5E+02 0.011 25.2 14.4 21 215-235 12-32 (159)
359 PF06295 DUF1043: Protein of u 31.0 4.6E+02 0.0099 24.7 10.3 12 297-308 69-80 (128)
360 TIGR00735 hisF imidazoleglycer 30.6 3.4E+02 0.0075 28.7 10.1 42 804-845 199-247 (254)
361 PF07851 TMPIT: TMPIT-like pro 30.4 6.5E+02 0.014 27.9 12.1 79 237-317 7-89 (330)
362 TIGR00095 RNA methyltransferas 30.3 1.4E+02 0.0031 30.1 6.8 67 710-776 73-143 (189)
363 cd00429 RPE Ribulose-5-phospha 30.2 5E+02 0.011 26.1 11.0 87 726-833 98-194 (211)
364 COG0626 MetC Cystathionine bet 30.1 3.7E+02 0.008 30.7 10.5 53 709-762 102-157 (396)
365 PRK09174 F0F1 ATP synthase sub 29.7 6.3E+02 0.014 25.9 14.8 23 235-257 85-107 (204)
366 cd04727 pdxS PdxS is a subunit 29.7 2E+02 0.0043 31.0 7.8 29 804-832 194-224 (283)
367 PLN02335 anthranilate synthase 29.5 86 0.0019 32.6 5.1 52 709-761 18-69 (222)
368 PRK14473 F0F1 ATP synthase sub 29.5 5.5E+02 0.012 25.1 15.6 26 210-235 10-35 (164)
369 PRK08476 F0F1 ATP synthase sub 29.4 5.1E+02 0.011 24.8 14.1 24 212-235 11-34 (141)
370 cd04722 TIM_phosphate_binding 29.2 2.9E+02 0.0063 26.9 8.9 57 753-832 135-198 (200)
371 TIGR00343 pyridoxal 5'-phospha 29.1 79 0.0017 34.0 4.7 52 768-842 184-242 (287)
372 TIGR00262 trpA tryptophan synt 28.8 7.1E+02 0.015 26.5 12.0 97 712-834 119-228 (256)
373 PRK11359 cyclic-di-GMP phospho 28.6 3.2E+02 0.0069 34.0 10.9 105 723-849 681-796 (799)
374 PLN02589 caffeoyl-CoA O-methyl 28.5 2.1E+02 0.0046 30.3 7.9 54 710-763 105-165 (247)
375 TIGR01037 pyrD_sub1_fam dihydr 28.3 87 0.0019 34.1 5.2 47 804-850 234-286 (300)
376 PRK12723 flagellar biosynthesi 28.2 5.4E+02 0.012 29.3 11.5 109 709-836 206-323 (388)
377 TIGR01163 rpe ribulose-phospha 27.9 4E+02 0.0086 26.9 9.8 56 768-846 43-99 (210)
378 PF07652 Flavi_DEAD: Flaviviru 27.9 3.3E+02 0.0072 26.5 8.2 28 708-735 32-59 (148)
379 PRK06106 nicotinate-nucleotide 27.9 1.9E+02 0.0041 31.4 7.4 68 735-831 197-264 (281)
380 PRK01130 N-acetylmannosamine-6 27.5 1.7E+02 0.0038 30.1 7.0 42 804-846 56-116 (221)
381 COG2022 ThiG Uncharacterized e 27.3 5.7E+02 0.012 26.9 10.1 83 724-832 121-210 (262)
382 PRK06774 para-aminobenzoate sy 27.2 74 0.0016 32.1 4.1 48 712-760 2-49 (191)
383 PRK09016 quinolinate phosphori 27.1 2.1E+02 0.0046 31.2 7.6 68 735-831 211-278 (296)
384 COG0159 TrpA Tryptophan syntha 26.6 1.5E+02 0.0032 31.8 6.2 56 769-846 81-145 (265)
385 PRK06978 nicotinate-nucleotide 26.5 2E+02 0.0044 31.3 7.3 66 736-830 209-274 (294)
386 PRK11677 hypothetical protein; 26.4 5.8E+02 0.013 24.4 10.9 29 212-240 7-35 (134)
387 PLN02334 ribulose-phosphate 3- 26.1 5.3E+02 0.012 26.7 10.4 82 727-832 109-201 (229)
388 KOG1562 Spermidine synthase [A 25.8 2.3E+02 0.005 30.8 7.4 62 711-773 147-214 (337)
389 PRK13566 anthranilate synthase 25.8 1.8E+02 0.0039 35.9 7.7 52 707-760 524-575 (720)
390 PLN02823 spermine synthase 25.7 1.6E+02 0.0034 32.8 6.6 55 710-766 128-188 (336)
391 PRK07259 dihydroorotate dehydr 25.5 4E+02 0.0087 28.9 9.8 47 804-850 234-286 (301)
392 PRK03958 tRNA 2'-O-methylase; 25.5 5.2E+02 0.011 26.0 9.3 64 710-778 32-98 (176)
393 PLN02781 Probable caffeoyl-CoA 25.5 2.4E+02 0.0053 29.5 7.7 54 710-763 94-153 (234)
394 PLN02274 inosine-5'-monophosph 25.4 8E+02 0.017 29.0 12.6 99 709-832 260-379 (505)
395 PLN02366 spermidine synthase 25.2 3.5E+02 0.0075 29.8 9.1 56 710-766 116-177 (308)
396 TIGR00417 speE spermidine synt 25.2 3.6E+02 0.0079 28.8 9.2 67 710-778 97-174 (270)
397 KOG2335 tRNA-dihydrouridine sy 25.2 4.1E+02 0.0089 29.7 9.3 87 710-833 146-233 (358)
398 PF10669 Phage_Gp23: Protein g 25.1 4.9E+02 0.011 23.1 12.3 18 253-270 63-80 (121)
399 PRK14722 flhF flagellar biosyn 25.1 4E+02 0.0088 30.1 9.7 94 710-822 168-265 (374)
400 PF00430 ATP-synt_B: ATP synth 25.0 5.5E+02 0.012 23.7 12.7 57 220-276 11-72 (132)
401 cd01080 NAD_bind_m-THF_DH_Cycl 24.9 2E+02 0.0042 28.6 6.4 58 707-766 42-99 (168)
402 PF02581 TMP-TENI: Thiamine mo 24.9 4E+02 0.0086 26.5 8.8 82 724-831 87-175 (180)
403 PRK14472 F0F1 ATP synthase sub 24.7 6.9E+02 0.015 24.7 15.7 18 217-234 27-44 (175)
404 cd01748 GATase1_IGP_Synthase T 24.7 2.6E+02 0.0056 28.2 7.6 42 712-760 1-42 (198)
405 PRK04180 pyridoxal biosynthesi 24.3 1.2E+02 0.0026 32.7 5.1 41 804-844 203-250 (293)
406 PRK05637 anthranilate synthase 24.3 1.4E+02 0.0029 30.9 5.4 49 710-760 2-50 (208)
407 TIGR01425 SRP54_euk signal rec 24.2 6.2E+02 0.013 29.2 11.1 67 709-779 128-207 (429)
408 TIGR00336 pyrE orotate phospho 24.2 3.2E+02 0.007 27.1 7.9 32 706-737 105-139 (173)
409 PLN02716 nicotinate-nucleotide 23.9 4.1E+02 0.0088 29.2 9.1 72 736-830 207-287 (308)
410 KOG1478 3-keto sterol reductas 23.7 47 0.001 35.1 1.8 28 496-533 12-39 (341)
411 PRK13125 trpA tryptophan synth 23.5 2.2E+02 0.0048 30.0 7.0 34 803-836 73-113 (244)
412 PRK04338 N(2),N(2)-dimethylgua 23.5 4.1E+02 0.0089 30.1 9.5 63 710-778 82-147 (382)
413 COG2061 ACT-domain-containing 23.3 3E+02 0.0065 26.8 6.9 58 712-770 53-129 (170)
414 cd01573 modD_like ModD; Quinol 23.3 3E+02 0.0064 29.7 7.9 71 736-832 187-257 (272)
415 PRK12727 flagellar biosynthesi 23.0 4.5E+02 0.0098 31.3 9.7 57 710-768 381-440 (559)
416 PRK13141 hisH imidazole glycer 23.0 3.3E+02 0.0072 27.6 8.0 43 711-760 1-43 (205)
417 PRK14723 flhF flagellar biosyn 22.7 5.9E+02 0.013 31.7 11.1 107 710-836 216-334 (767)
418 PRK08007 para-aminobenzoate sy 22.5 98 0.0021 31.2 3.9 49 712-761 2-50 (187)
419 cd01948 EAL EAL domain. This d 22.4 2.9E+02 0.0062 28.2 7.6 93 723-837 135-238 (240)
420 PF06073 DUF934: Bacterial pro 22.3 3.6E+02 0.0077 24.9 7.0 71 754-848 19-93 (110)
421 PTZ00314 inosine-5'-monophosph 22.2 6.5E+02 0.014 29.7 11.1 99 709-832 253-372 (495)
422 COG0421 SpeE Spermidine syntha 22.0 1.9E+02 0.0042 31.3 6.2 67 710-778 101-178 (282)
423 PLN02476 O-methyltransferase 22.0 2.9E+02 0.0063 29.9 7.5 54 710-763 144-203 (278)
424 PF13659 Methyltransf_26: Meth 21.9 2.4E+02 0.0051 25.3 6.1 54 710-764 24-80 (117)
425 PF02882 THF_DHG_CYH_C: Tetrah 21.8 1.5E+02 0.0033 29.2 4.8 59 707-767 34-92 (160)
426 cd06338 PBP1_ABC_ligand_bindin 21.7 9E+02 0.019 26.2 11.8 65 711-778 143-218 (345)
427 smart00052 EAL Putative diguan 21.7 3.6E+02 0.0079 27.5 8.2 93 724-838 137-240 (241)
428 PRK02083 imidazole glycerol ph 21.7 6.3E+02 0.014 26.6 10.1 43 804-846 197-246 (253)
429 TIGR01232 lacD tagatose 1,6-di 21.5 2.6E+02 0.0055 30.8 6.9 30 803-832 240-275 (325)
430 PRK12726 flagellar biosynthesi 21.3 6.7E+02 0.014 28.7 10.3 108 709-836 234-353 (407)
431 PRK06559 nicotinate-nucleotide 21.3 2.8E+02 0.0061 30.2 7.2 91 711-830 169-266 (290)
432 PRK04457 spermidine synthase; 21.2 4.8E+02 0.01 27.8 9.1 68 709-778 90-165 (262)
433 TIGR03128 RuMP_HxlA 3-hexulose 21.2 8.5E+02 0.018 24.5 14.4 97 721-845 90-203 (206)
434 COG3967 DltE Short-chain dehyd 21.2 58 0.0013 33.5 1.8 18 493-510 11-28 (245)
435 TIGR01302 IMP_dehydrog inosine 21.1 2.5E+02 0.0053 32.7 7.3 66 740-830 224-290 (450)
436 cd00532 MGS-like MGS-like doma 21.0 2.7E+02 0.0058 25.4 6.2 51 725-776 34-95 (112)
437 PRK11475 DNA-binding transcrip 21.0 5.1E+02 0.011 26.5 8.9 100 584-687 16-115 (207)
438 cd06346 PBP1_ABC_ligand_bindin 20.9 7.6E+02 0.016 26.5 10.9 64 712-778 141-214 (312)
439 PF10883 DUF2681: Protein of u 20.8 5.9E+02 0.013 22.5 9.0 8 222-229 15-22 (87)
440 COG2820 Udp Uridine phosphoryl 20.8 2E+02 0.0044 30.2 5.7 25 368-393 21-45 (248)
441 COG4825 Uncharacterized membra 20.8 3.1E+02 0.0066 29.6 7.0 56 705-762 176-234 (395)
442 PRK13460 F0F1 ATP synthase sub 20.5 8.3E+02 0.018 24.1 15.9 59 218-276 26-89 (173)
443 PRK04128 1-(5-phosphoribosyl)- 20.4 6.1E+02 0.013 26.4 9.4 82 741-847 31-118 (228)
444 PRK01033 imidazole glycerol ph 20.3 3.8E+02 0.0083 28.5 8.1 54 756-832 168-225 (258)
445 PF05768 DUF836: Glutaredoxin- 20.3 2.2E+02 0.0048 24.2 5.1 66 742-845 16-81 (81)
446 KOG0020 Endoplasmic reticulum 20.1 1.2E+02 0.0026 34.9 4.1 17 461-477 143-159 (785)
447 PRK05742 nicotinate-nucleotide 20.0 4.7E+02 0.01 28.3 8.6 68 736-832 193-260 (277)
448 TIGR00734 hisAF_rel hisA/hisF 20.0 4.6E+02 0.0099 27.2 8.4 55 755-832 155-212 (221)
No 1
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=4.6e-62 Score=611.70 Aligned_cols=506 Identities=36% Similarity=0.515 Sum_probs=411.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeE
Q 003018 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 329 (856)
Q Consensus 250 ~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~ 329 (856)
+++++++++.|++|++++||||||||++|+|+++++.+...++.+++|++.+..++++|..+|+++++++|++++++.++
T Consensus 283 ~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 362 (919)
T PRK11107 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGKLVLE 362 (919)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 34566777889999999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred eEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccc
Q 003018 330 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 409 (856)
Q Consensus 330 ~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~ 409 (856)
..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|++.....
T Consensus 363 ~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~---- 438 (919)
T PRK11107 363 NIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRAL---- 438 (919)
T ss_pred EeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEec----
Confidence 9999999999999999999999999999999988888889999999999999999999999999998887754321
Q ss_pred hhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCC
Q 003018 410 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489 (856)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s 489 (856)
..+...+.|+|.|+|+|||++.++++|+||++.+.+
T Consensus 439 --------------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 474 (919)
T PRK11107 439 --------------------------------------------SNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS 474 (919)
T ss_pred --------------------------------------------CCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC
Confidence 112235789999999999999999999999999998
Q ss_pred CCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEeCC
Q 003018 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 569 (856)
Q Consensus 490 ~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lvvd~ 569 (856)
+++..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|+........ .......+.|.+++++|+
T Consensus 475 ~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~----------~~~~~~~~~g~~ili~d~ 544 (919)
T PRK11107 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPII----------DGLPTDCLAGKRLLYVEP 544 (919)
T ss_pred CCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCcccc----------ccCCccccCCCeEEEEeC
Confidence 8888999999999999999999999999999999999999999864332110 111234577899999999
Q ss_pred chhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCceEEEEecc
Q 003018 570 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 649 (856)
Q Consensus 570 ~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 649 (856)
++..+......|..+|+.+..+.+..+ + ....++.++++........... .....+..... ...++++..+
T Consensus 545 ~~~~~~~l~~~L~~~g~~v~~~~~~~~-l-----~~~~~d~il~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~i~~~~~ 615 (919)
T PRK11107 545 NSAAAQATLDILSETPLEVTYSPTLSQ-L-----PEAHYDILLLGLPVTFREPLTM--LHERLAKAKSM-TDFLILALPC 615 (919)
T ss_pred CHHHHHHHHHHHHHCCCEEEEcCCHHH-h-----ccCCCCEEEecccCCCCCCHHH--HHHHHHhhhhc-CCcEEEEeCC
Confidence 999999999999999999999988776 2 2345777777766543332211 11122221111 2223333332
Q ss_pred CCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEcCCHHHHHHHHHHH
Q 003018 650 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 729 (856)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~~l~~~L 729 (856)
........ ....+...++.||+....+...+............. .......+.+|||||||+.++..++.+|
T Consensus 616 ~~~~~~~~-~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~~~-------~~~~~~~~~~vLivdd~~~~~~~l~~~L 687 (919)
T PRK11107 616 HEQVLAEQ-LKQDGADACLSKPLSHTRLLPALLEPCHHKQPPLLP-------PTDESRLPLTVMAVDDNPANLKLIGALL 687 (919)
T ss_pred cchhhHHH-HhhCCCceEECCCCCHHHHHHHHHHhhccccccccc-------ccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 22211111 122355678999999999888887654211111000 0011123568999999999999999999
Q ss_pred hhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEE
Q 003018 730 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 809 (856)
Q Consensus 730 ~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIa 809 (856)
+..|+.|.++.+|.+|++.+. .+.||+||||++||+|||+++++.||+.. ..+++|||+
T Consensus 688 ~~~~~~v~~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~lr~~~--------------------~~~~~pii~ 746 (919)
T PRK11107 688 EEQVEHVVLCDSGHQAVEQAK-QRPFDLILMDIQMPGMDGIRACELIRQLP--------------------HNQNTPIIA 746 (919)
T ss_pred HHcCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHhcc--------------------cCCCCCEEE
Confidence 999999999999999999985 56899999999999999999999999742 134689999
Q ss_pred EecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 810 MTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 810 lTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
+|+....+...+|+++||++|+.||++.++|...+.+++...
T Consensus 747 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 788 (919)
T PRK11107 747 VTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPGP 788 (919)
T ss_pred EeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcccc
Confidence 999999999999999999999999999999999999997643
No 2
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=3.8e-61 Score=594.55 Aligned_cols=488 Identities=29% Similarity=0.451 Sum_probs=387.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003018 244 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 323 (856)
Q Consensus 244 ~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~ 323 (856)
.+++++++++++++++|++|+++|||||||||++|+|++++|.....+++++++++.+..++++|..+|+++||++|+++
T Consensus 431 ~~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~ 510 (924)
T PRK10841 431 ESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIES 510 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666777888889999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEe
Q 003018 324 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 403 (856)
Q Consensus 324 g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~ 403 (856)
+.+.++..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+|||.||++||+|||+.|.|.|.+...
T Consensus 511 ~~~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~~ 590 (924)
T PRK10841 511 EQLKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRVD 590 (924)
T ss_pred CCceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Confidence 99999999999999999999999999999999999999888888899999999999999999999999999988877531
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCcc
Q 003018 404 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483 (856)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 483 (856)
+ ..+.|+|.|||+||+++.++++|+||
T Consensus 591 ~-----------------------------------------------------~~l~i~V~DtG~GI~~e~~~~lFepF 617 (924)
T PRK10841 591 G-----------------------------------------------------DYLSFRVRDTGVGIPAKEVVRLFDPF 617 (924)
T ss_pred C-----------------------------------------------------CEEEEEEEEcCcCCCHHHHHHHhccc
Confidence 1 24789999999999999999999999
Q ss_pred ccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcE
Q 003018 484 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMK 563 (856)
Q Consensus 484 ~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 563 (856)
++.+.+.++..+|+||||+||++|+++|||+|+++|.+|+||+|+|++|+....... ........|.+
T Consensus 618 ~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~~------------~~~~~~~~g~~ 685 (924)
T PRK10841 618 FQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPQ------------KKGVEGLQGKR 685 (924)
T ss_pred ccCCCCCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCcccccc------------cccCcccCCCE
Confidence 999887777788999999999999999999999999999999999999986432111 11223467889
Q ss_pred EEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCceE
Q 003018 564 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 643 (856)
Q Consensus 564 ~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (856)
++++.+++........+++++|+.+....... ....+.++.|............ ....
T Consensus 686 i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~~~---------~~~~d~~i~d~~~~~~~~~~~~---~~~~---------- 743 (924)
T PRK10841 686 CWLAVRNASLEQFLETLLQRSGIQVQRYEGQE---------PTPEDVLITDDPVQKKWQGRAV---ITFC---------- 743 (924)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCeEEEccccc---------CCcCcEEEEcCccccccchhhh---hhhh----------
Confidence 99999999989999999999999988765321 1122333333321110000000 0000
Q ss_pred EEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCc-chhhhcCCCCeEEEEcCCHHHH
Q 003018 644 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLLGRKILIVDDNNVNL 722 (856)
Q Consensus 644 ~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ILvVdDn~~n~ 722 (856)
....... ........+.+|.....+...+.................+. ........+.+|||||||+.++
T Consensus 744 ---~~~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~ 814 (924)
T PRK10841 744 ---RRHIGIP------LEIAPGEWVHSTATPHELPALLARIYRIELESDDSANALPSTDKAVSDNDDMMILVVDDHPINR 814 (924)
T ss_pred ---hccccCh------hhcccCceeeccCChHHHHHHHHHHhhcccccccccccccccccccccCCCCEEEEECCCHHHH
Confidence 0000000 00011123455666666666665554322211111111000 0011122457999999999999
Q ss_pred HHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCC
Q 003018 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 802 (856)
Q Consensus 723 ~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~ 802 (856)
..+..+|++.||.|..+.||.+|++.+. .+.||+||||++||+|||+++++.||+. .
T Consensus 815 ~~l~~~L~~~G~~v~~a~~g~eal~~l~-~~~~DlVl~D~~mP~mdG~el~~~ir~~----------------------~ 871 (924)
T PRK10841 815 RLLADQLGSLGYQCKTANDGVDALNVLS-KNHIDIVLTDVNMPNMDGYRLTQRLRQL----------------------G 871 (924)
T ss_pred HHHHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHHhc----------------------C
Confidence 9999999999999999999999999985 5679999999999999999999999974 2
Q ss_pred CCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 803 FHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 803 ~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
..+|||++|++...+...+|+++||++|+.||++.++|...|.++...
T Consensus 872 ~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~ 919 (924)
T PRK10841 872 LTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAER 919 (924)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999988653
No 3
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-63 Score=600.49 Aligned_cols=767 Identities=34% Similarity=0.389 Sum_probs=558.3
Q ss_pred CccceeEeecCCcceEEEeccCCChhchHHHHHHHhcCCceeeccccccccCcceEEEEEeeecCCCCCCCChHHHH-Hh
Q 003018 48 EEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERI-EA 126 (856)
Q Consensus 48 ~~y~pv~~~~~~~~~~~g~d~~s~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~~~-~~ 126 (856)
.+|.|+++...+......+|...+.+.+.+...++-++..+++.++....++..+...++-++...++.......+. +.
T Consensus 4 ~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~ 83 (786)
T KOG0519|consen 4 IESKPLKFNNDTISSIVTLDNDDGGEDLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEA 83 (786)
T ss_pred cccccccccccceeEEEEeecCCCchhhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhccccccccccccee
Confidence 89999999999999999999999999999999999999999999998887777777777777766555554444443 23
Q ss_pred hcceeeeecchHHHHHHHHHHhhccCcEEEEeeccCCCCCceeccccccCCCcceeEeeccCCCcccccceeee--eccc
Q 003018 127 TDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCR--FKQK 204 (856)
Q Consensus 127 ~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 204 (856)
...+-...++...+....+.....+......++..........+|+........+++....+..+.+.+...++ ....
T Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~ 163 (786)
T KOG0519|consen 84 GVLSEFIAFDNLCGATHLLNGWTSYTSHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAE 163 (786)
T ss_pred ccccchhhhhhhhhhcccchhhhcCCccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchh
Confidence 23444555666665555555555444444445444444444456666666666666666667666666666666 3333
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHhhhhhHHHHHHHHH
Q 003018 205 APWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQ--FLATVSHEIRTPMNGVLGML 282 (856)
Q Consensus 205 ~~~~~~~~~~~~~~l~i~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~ae~a~~aks~--fla~iSHElRTPL~~I~g~~ 282 (856)
..+.+.++..............+.......|...++.....+.+.....+++...+++ |+++++|||||||++ |+.
T Consensus 164 l~~~~~~i~~s~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~~~ 241 (786)
T KOG0519|consen 164 LDYEVGLINTSLETLSIVRMLTHEIRAALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--GML 241 (786)
T ss_pred hhhhhhhhhhhhheeeeeeeeeeehhhhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeeccccc--Ccc
Confidence 4444455555444444444455566677777777777777777777788888888888 999999999999999 888
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeC
Q 003018 283 DMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 362 (856)
Q Consensus 283 ~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~ 362 (856)
..+.++..+.+++.+....+.++..++.++|+++|.+++++|.+++...+|+++.+++.+.+.+...+..++..+....+
T Consensus 242 ~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~ 321 (786)
T KOG0519|consen 242 GGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLS 321 (786)
T ss_pred eEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCcccccc
Q 003018 363 DRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 442 (856)
Q Consensus 363 ~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (856)
...|..+.+|+.+++||+.|+++||+|||..|+|.+++++.+.......+.... ....+..+....+....|.
T Consensus 322 ~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i~~~~~~~~~~~~~~~~l~~~-~~e~~~~~~~~~~~~~~~~------ 394 (786)
T KOG0519|consen 322 SGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHLEESVIAREELSESNDVLLRA-KEEAHMAGKARIDFLQKMS------ 394 (786)
T ss_pred CCCcceeeccceeeeeeehhhccceecccccceEEEEEEeehhcchhhHHHHhh-hhhhhhccchhhhHHHHhc------
Confidence 999999999999999999999999999999999999998876543322111000 0000001111000000000
Q ss_pred CCCCCCC---CCCCCcCceeEEEEEEecCCCCChhhHhh-hcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEE
Q 003018 443 QDGSTSP---FKSSSADLINLIVSVEDTGQGIPLEAQSR-IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 518 (856)
Q Consensus 443 ~~~~~~~---~~~~~~~~~~l~i~V~DtG~GI~~e~~~~-iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~ 518 (856)
.+...+ ............+.+.|+|.||+.+.... +|.+|.|++.+.++.++|+|+|++||++++++|+|.+.+.
T Consensus 395 -~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~ 473 (786)
T KOG0519|consen 395 -HAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDI 473 (786)
T ss_pred -cccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhh
Confidence 000000 00011112345688999999999999999 9999999999999999999999999999999999999999
Q ss_pred EeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHH
Q 003018 519 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 598 (856)
Q Consensus 519 S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~ 598 (856)
+....|++|+|++++....+......... .......+.|..+.+.+....+..+.+...+..|+.|+...+...++
T Consensus 474 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~ 549 (786)
T KOG0519|consen 474 SCISLGKTFSFTLDLLTNLPKSVVGDEKR----LFQIILDFNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSLAF 549 (786)
T ss_pred hhhccCceeeEEEEeccCCCccchhhhhh----hhhhhhhhcchhhhhhccccCcceeEEEEecccCccccccccchhhh
Confidence 99999999999999977655433211111 12334567788888888887777777788888888888886555444
Q ss_pred HHHhcCCCc-ceEEEeeccccccCC---chhHHHHHHHhhcCCC-CCceEEEEeccCCccccCCCCCCCCCCceeccCCc
Q 003018 599 SQIASGSKI-INMILVEQEVWEKDT---SVSTLFVNNLRKLGCG-FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLR 673 (856)
Q Consensus 599 ~~~~~~~~~-~~~~l~d~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~ 673 (856)
-........ ...+.++...|.... +.........+..... .....+.++.+.......+...+........+|..
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (786)
T KOG0519|consen 550 WFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSP 629 (786)
T ss_pred hhcccccccchheEEeeeccccccCCCcchhhhhhhccccchhhcccccccccccchhhHHhhhcccccccccccCCccH
Confidence 433322222 445556666664333 1111111111111111 01222333332222222222222222244556667
Q ss_pred hHHHHHHHHHHhcC-CCCCCCCCCCCCcchhhhcCCCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCC
Q 003018 674 SSMLAASLQRAMGV-GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 752 (856)
Q Consensus 674 ~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~ 752 (856)
...+..+.+..++. +................+.+.|++|||||||++|++++..+|+++|++++++.+|.||+++++++
T Consensus 630 s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~~ 709 (786)
T KOG0519|consen 630 SLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPP 709 (786)
T ss_pred HHHHHhhccccccccccccCCCcccccCccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCCC
Confidence 77777777766654 22222221122222255677899999999999999999999999999999999999999999878
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 753 HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 753 ~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
+.||+||||+|||+|||+|++++||+.+ .+++|||||||+++++..++|+++|||+||+
T Consensus 710 ~~y~~ifmD~qMP~mDG~e~~~~irk~~---------------------~~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~ 768 (786)
T KOG0519|consen 710 HSYDVIFMDLQMPEMDGYEATREIRKKE---------------------RWHLPIVALTADADPSTEEECLEVGMDGYLS 768 (786)
T ss_pred CcccEEEEEcCCcccchHHHHHHHHHhh---------------------cCCCCEEEEecCCcHHHHHHHHHhCCceEEc
Confidence 9999999999999999999999999853 2789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhhCC
Q 003018 833 KPFEAEQLYREVSRFFP 849 (856)
Q Consensus 833 KP~~~~~L~~~l~~~~~ 849 (856)
|||+.+.|..++.+|+.
T Consensus 769 KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 769 KPFTLEKLVKILREFLL 785 (786)
T ss_pred ccccHHHHHHHHHHHhc
Confidence 99999999999999875
No 4
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=5.1e-56 Score=559.98 Aligned_cols=369 Identities=39% Similarity=0.637 Sum_probs=325.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeE
Q 003018 250 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 329 (856)
Q Consensus 250 ~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~ 329 (856)
+.++++++++|++|+++|||||||||++|+|++++|.+..+++.+++|++.+..++++|..+++++++++|+|.+++.++
T Consensus 454 ~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~~~~ 533 (968)
T TIGR02956 454 RAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHLSIS 533 (968)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeee
Confidence 44567778889999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred eEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccc
Q 003018 330 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 409 (856)
Q Consensus 330 ~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~ 409 (856)
..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+|||.|||+||+|||+.|.|.|.+...++
T Consensus 534 ~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~~---- 609 (968)
T TIGR02956 534 PRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLNDD---- 609 (968)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcCC----
Confidence 9999999999999999999999999999999988888889999999999999999999999999998888754211
Q ss_pred hhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCC
Q 003018 410 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489 (856)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s 489 (856)
..+.|+|.|+|+|||++.+++||+||++.+
T Consensus 610 ------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-- 639 (968)
T TIGR02956 610 ------------------------------------------------SSLLFEVEDTGCGIAEEEQATLFDAFTQAD-- 639 (968)
T ss_pred ------------------------------------------------CeEEEEEEeCCCCCCHHHHHHHHhhhhccC--
Confidence 017899999999999999999999999987
Q ss_pred CCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEeCC
Q 003018 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 569 (856)
Q Consensus 490 ~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lvvd~ 569 (856)
..+..+|+||||+|||++++.|||+|.++|.+|+||+|+|++|+........ ..
T Consensus 640 ~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~--------------~~------------ 693 (968)
T TIGR02956 640 GRRRSGGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAED--------------SA------------ 693 (968)
T ss_pred CCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCcccc--------------cc------------
Confidence 3456689999999999999999999999999999999999999853211000 00
Q ss_pred chhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCceEEEEecc
Q 003018 570 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 649 (856)
Q Consensus 570 ~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 649 (856)
.
T Consensus 694 -----------------------------------------------------------------------~-------- 694 (968)
T TIGR02956 694 -----------------------------------------------------------------------T-------- 694 (968)
T ss_pred -----------------------------------------------------------------------c--------
Confidence 0
Q ss_pred CCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEcCCHHHHHHHHHHH
Q 003018 650 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 729 (856)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~~l~~~L 729 (856)
.. .....+.+|||||||+.++..+..+|
T Consensus 695 ---------~~-------------------------------------------~~~~~~~~iLvvdd~~~~~~~l~~~L 722 (968)
T TIGR02956 695 ---------LT-------------------------------------------VIDLPPQRVLLVEDNEVNQMVAQGFL 722 (968)
T ss_pred ---------cc-------------------------------------------cccccccceEEEcCcHHHHHHHHHHH
Confidence 00 00012347999999999999999999
Q ss_pred hhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEE
Q 003018 730 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 809 (856)
Q Consensus 730 ~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIa 809 (856)
+..|+.|.++.+|.+|++.+. .+.||+||||++||+|||+++++.||+..+ ...++|||+
T Consensus 723 ~~~g~~v~~~~~~~~a~~~l~-~~~~dlvl~D~~mp~~~g~~~~~~ir~~~~-------------------~~~~~pii~ 782 (968)
T TIGR02956 723 TRLGHKVTLAESGQSALECFH-QHAFDLALLDINLPDGDGVTLLQQLRAIYG-------------------AKNEVKFIA 782 (968)
T ss_pred HHcCCEEEEECCHHHHHHHHH-CCCCCEEEECCCCCCCCHHHHHHHHHhCcc-------------------ccCCCeEEE
Confidence 999999999999999999985 478999999999999999999999997432 112389999
Q ss_pred EecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 810 MTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 810 lTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
+|++...+...+|+++||++|+.||++.++|...|.+++.
T Consensus 783 lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 783 FSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999874
No 5
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=1.9e-56 Score=550.56 Aligned_cols=373 Identities=33% Similarity=0.529 Sum_probs=324.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 003018 249 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 328 (856)
Q Consensus 249 ~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l 328 (856)
+.++++.++++|++|+++|||||||||++|.|+++++.++..++++++|++.+..++++|..+++++++++|++++++.+
T Consensus 272 ~e~~l~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~ 351 (779)
T PRK11091 272 YQDALEKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQL 351 (779)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEE
Confidence 34455666778999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred EeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeecccc
Q 003018 329 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 408 (856)
Q Consensus 329 ~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~ 408 (856)
...++++.++++++...+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+||++.|.|.|.+....
T Consensus 352 ~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~---- 427 (779)
T PRK11091 352 DNQPIDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEE---- 427 (779)
T ss_pred EeeccCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEcc----
Confidence 9999999999999999999999999999999998888888999999999999999999999999998888774321
Q ss_pred chhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccC-C
Q 003018 409 SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV-G 487 (856)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~-d 487 (856)
...+.|+|.|||+|||++.+++||+|||++ +
T Consensus 428 ------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~ 459 (779)
T PRK11091 428 ------------------------------------------------GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKD 459 (779)
T ss_pred ------------------------------------------------CCEEEEEEEecCCCCCHHHHHHHHHHhhcccC
Confidence 123789999999999999999999999999 5
Q ss_pred CCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEe
Q 003018 488 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVV 567 (856)
Q Consensus 488 ~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lvv 567 (856)
.+.++..+|+||||+|||++|+.|||+|+++|.+|+||+|+|++|+......... .
T Consensus 460 ~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~-------------~----------- 515 (779)
T PRK11091 460 SHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVED-------------A----------- 515 (779)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEEEecccccccccc-------------c-----------
Confidence 5566668999999999999999999999999999999999999997432110000 0
Q ss_pred CCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCceEEEEe
Q 003018 568 DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLA 647 (856)
Q Consensus 568 d~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 647 (856)
+
T Consensus 516 -------------------------------------------------------------------------~------ 516 (779)
T PRK11091 516 -------------------------------------------------------------------------F------ 516 (779)
T ss_pred -------------------------------------------------------------------------c------
Confidence 0
Q ss_pred ccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEcCCHHHHHHHHH
Q 003018 648 NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAA 727 (856)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~~l~~ 727 (856)
.. . .....+.+||||||++.++..+..
T Consensus 517 -----------~~---------~---------------------------------~~~~~~~~ILivdD~~~~~~~l~~ 543 (779)
T PRK11091 517 -----------DE---------D---------------------------------DMPLPALNILLVEDIELNVIVARS 543 (779)
T ss_pred -----------cc---------c---------------------------------cccccccceEEEcCCHHHHHHHHH
Confidence 00 0 000123589999999999999999
Q ss_pred HHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCC-Cc
Q 003018 728 GLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH-VP 806 (856)
Q Consensus 728 ~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~-~p 806 (856)
+|+..|+.|.++.+|.+|++.+. .+.||+||||++||+|||++++++||+..+ ..+ +|
T Consensus 544 ~L~~~g~~v~~a~~~~eal~~~~-~~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~--------------------~~~~~~ 602 (779)
T PRK11091 544 VLEKLGNSVDVAMTGKEALEMFD-PDEYDLVLLDIQLPDMTGLDIARELRERYP--------------------REDLPP 602 (779)
T ss_pred HHHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEcCCCCCCCHHHHHHHHHhccc--------------------cCCCCc
Confidence 99999999999999999999985 567999999999999999999999997421 124 49
Q ss_pred EEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 807 ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 807 IIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
||++|++.... ..+|+++||++|+.||++.++|...+.+++...
T Consensus 603 ii~~ta~~~~~-~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 646 (779)
T PRK11091 603 LVALTANVLKD-KKEYLDAGMDDVLSKPLSVPALTAMIKKFWDTQ 646 (779)
T ss_pred EEEEECCchHh-HHHHHHCCCCEEEECCCCHHHHHHHHHHHhccc
Confidence 99999987654 678999999999999999999999999987543
No 6
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=2.5e-55 Score=551.03 Aligned_cols=427 Identities=34% Similarity=0.509 Sum_probs=336.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003018 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 325 (856)
Q Consensus 246 ~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~ 325 (856)
+.+.+++++.++..|++|++++||||||||++|+|++++|.+...+.+++++++.+..++++|..+||++|+++|+|+++
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~~ 463 (921)
T PRK15347 384 LAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDFSRIESGQ 463 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33445566777788999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred ceeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeec
Q 003018 326 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 405 (856)
Q Consensus 326 ~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~ 405 (856)
+.++..++++.+++++++..+...+..+++.+.+.+++..|..+.+|+.+|+||+.|||+||+|||+.|.|.|++...+
T Consensus 464 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i~~~~~~- 542 (921)
T PRK15347 464 MTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRLRVKRHE- 542 (921)
T ss_pred ccceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEEEEEEcC-
Confidence 9999999999999999999999999999999999999888888999999999999999999999999999888774321
Q ss_pred cccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCcccc
Q 003018 406 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485 (856)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q 485 (856)
..+.|+|+|||+|||++.+++||+||+|
T Consensus 543 ----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~ 570 (921)
T PRK15347 543 ----------------------------------------------------QQLCFTVEDTGCGIDIQQQQQIFTPFYQ 570 (921)
T ss_pred ----------------------------------------------------CEEEEEEEEcCCCCCHHHHHHHhcCccc
Confidence 2478999999999999999999999998
Q ss_pred CCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEE
Q 003018 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKAL 565 (856)
Q Consensus 486 ~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l 565 (856)
.+. ..+|+||||+||++++++|||+|+++|.+|+||+|+|++|+........ +.+.
T Consensus 571 ~~~----~~~g~GLGL~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~~~~~~~-----------------~~~~--- 626 (921)
T PRK15347 571 ADT----HSQGTGLGLTIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNEYAPPEP-----------------LKGE--- 626 (921)
T ss_pred CCC----CCCCCchHHHHHHHHHHHcCCEEEEEecCCCceEEEEEEECCCCCCccc-----------------cccc---
Confidence 754 3479999999999999999999999999999999999999854211100 0000
Q ss_pred EeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCceEEE
Q 003018 566 VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 645 (856)
Q Consensus 566 vvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 645 (856)
..........+..||+............
T Consensus 627 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 654 (921)
T PRK15347 627 -----LSAPLALHRQLSAWGITCQPGHQNPALL----------------------------------------------- 654 (921)
T ss_pred -----ccchHHHHHHHHHcCCcccccccchhhc-----------------------------------------------
Confidence 0001112233444544332221000000
Q ss_pred EeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEcCCHHHHHHH
Q 003018 646 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 725 (856)
Q Consensus 646 l~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~~l 725 (856)
.+.. +.-+..+...+............. ..+ ....+.+||||||++.++..+
T Consensus 655 ------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~iLivdd~~~~~~~l 706 (921)
T PRK15347 655 ------------------DPEL---AYLPGRLYDLLQQIIQGAPNEPVI--NLP-----LQPWQLQILLVDDVETNRDII 706 (921)
T ss_pred ------------------chhh---hhcchHHHHHHHHHhhcCCCcccc--cCC-----CCcccCCEEEEeCCHHHHHHH
Confidence 0000 000011111111111111000000 000 012245899999999999999
Q ss_pred HHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCC
Q 003018 726 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 805 (856)
Q Consensus 726 ~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 805 (856)
..+|+..|+.|.++.+|.+|++.+. .+.||+||||++||+|||++++++||+.+.. ..+++
T Consensus 707 ~~~L~~~g~~v~~a~~~~~al~~~~-~~~~dlil~D~~mp~~~G~~~~~~ir~~~~~------------------~~~~~ 767 (921)
T PRK15347 707 GMMLVELGQQVTTAASGTEALELGR-QHRFDLVLMDIRMPGLDGLETTQLWRDDPNN------------------LDPDC 767 (921)
T ss_pred HHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhchhh------------------cCCCC
Confidence 9999999999999999999999885 5789999999999999999999999974311 13578
Q ss_pred cEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 806 PILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 806 pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
|||++|+....+...+|+++||++|+.||++.++|..++.+..
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 810 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAA 810 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764
No 7
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=2.5e-54 Score=541.30 Aligned_cols=369 Identities=33% Similarity=0.554 Sum_probs=323.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003018 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 325 (856)
Q Consensus 246 ~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~ 325 (856)
..+.+.+++++.++|++|+++|||||||||++|.|++++|.+...++.++++++.+..++++|..+|++++++++++.|.
T Consensus 430 ~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~~~ 509 (914)
T PRK11466 430 HRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGG 509 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34455667778889999999999999999999999999999888888899999999999999999999999999999884
Q ss_pred --ceeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEe
Q 003018 326 --LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 403 (856)
Q Consensus 326 --~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~ 403 (856)
+.++..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|.+...
T Consensus 510 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g~I~i~~~~~ 589 (914)
T PRK11466 510 KNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEGSIVLRSRTD 589 (914)
T ss_pred CcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc
Confidence 567778999999999999999999999999999999888888899999999999999999999999999988876431
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCcc
Q 003018 404 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483 (856)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 483 (856)
+ ..+.|.|.|||+|||++.++++|+||
T Consensus 590 ~-----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~f 616 (914)
T PRK11466 590 G-----------------------------------------------------EQWLVEVEDSGCGIDPAKLAEIFQPF 616 (914)
T ss_pred C-----------------------------------------------------CEEEEEEEECCCCCCHHHHHHHhchh
Confidence 1 24679999999999999999999999
Q ss_pred ccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcE
Q 003018 484 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMK 563 (856)
Q Consensus 484 ~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 563 (856)
++.+ ...+|+||||+|||++++.|||+|.+.|.+|+||+|+|++|+........ .
T Consensus 617 ~~~~----~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~---------------~------ 671 (914)
T PRK11466 617 VQVS----GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVP---------------K------ 671 (914)
T ss_pred hcCC----CCCCCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEccccccccc---------------c------
Confidence 9863 24579999999999999999999999999999999999999743210000 0
Q ss_pred EEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCceE
Q 003018 564 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 643 (856)
Q Consensus 564 ~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (856)
T Consensus 672 -------------------------------------------------------------------------------- 671 (914)
T PRK11466 672 -------------------------------------------------------------------------------- 671 (914)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEcCCHHHHH
Q 003018 644 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 723 (856)
Q Consensus 644 ~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~ 723 (856)
.. . . .....+++|||||||+.++.
T Consensus 672 ---------------~~--~------~---------------------------------~~~~~~~~vLivdD~~~~~~ 695 (914)
T PRK11466 672 ---------------TV--N------Q---------------------------------AVRLDGLRLLLIEDNPLTQR 695 (914)
T ss_pred ---------------cc--c------c---------------------------------ccccCCcceEEEeCCHHHHH
Confidence 00 0 0 00012458999999999999
Q ss_pred HHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCC
Q 003018 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNF 803 (856)
Q Consensus 724 ~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~ 803 (856)
.+..+|+..|+.|.++.+|.+|++.+...+.||+||||++||+|||++++++||+. .+
T Consensus 696 ~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~lr~~----------------------~~ 753 (914)
T PRK11466 696 ITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQ----------------------YP 753 (914)
T ss_pred HHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHHHhh----------------------CC
Confidence 99999999999999999999999987544579999999999999999999999973 34
Q ss_pred CCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 804 HVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 804 ~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
++|||++|+....+...+|+++|++||+.||++.++|...|.+++..
T Consensus 754 ~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 754 SLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred CCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 68999999999999999999999999999999999999999998753
No 8
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=1e-49 Score=512.60 Aligned_cols=382 Identities=31% Similarity=0.480 Sum_probs=318.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003018 241 EDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT-QQDYVRTAQASGKALVSLINEVLDQA 319 (856)
Q Consensus 241 ~~~~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~-q~~~l~~i~~~~~~L~~lIndlLd~s 319 (856)
+..+++++.+++++++..+|.+|+++|||||||||++|.|++++|.+...+.+ ..++++.+..++++|..+|+++++++
T Consensus 693 ~~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~ 772 (1197)
T PRK09959 693 DLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVD 772 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666777778899999999999999999999999999976655544 45788999999999999999999999
Q ss_pred HHhcCCceeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEE
Q 003018 320 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVT 399 (856)
Q Consensus 320 kie~g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~ 399 (856)
+++++...+...++++.+++++++..+...+..+++.+.+..+...+..+.+|+.+|+||+.||++||+||++.|.+.+.
T Consensus 773 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~ 852 (1197)
T PRK09959 773 KIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKIT 852 (1197)
T ss_pred HhhcCCceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999999999999999999999999999998876543334468899999999999999999999999987776
Q ss_pred EEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhh
Q 003018 400 VYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 479 (856)
Q Consensus 400 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~i 479 (856)
+..... ..+...+.|+|.|+|+|||++.+++|
T Consensus 853 ~~~~~~------------------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~i 884 (1197)
T PRK09959 853 TSLGHI------------------------------------------------DDNHAVIKMTIMDSGSGLSQEEQQQL 884 (1197)
T ss_pred EEEeee------------------------------------------------cCCceEEEEEEEEcCCCCCHHHHHHh
Confidence 643210 01123477999999999999999999
Q ss_pred cCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCccc
Q 003018 480 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 559 (856)
Q Consensus 480 F~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (856)
|+||++.+. .+..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|+......... .
T Consensus 885 F~~f~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~-------------~--- 946 (1197)
T PRK09959 885 FKRYSQTSA--GRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATV-------------E--- 946 (1197)
T ss_pred hcccccccc--CCCCCCcCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhccc-------------c---
Confidence 999998644 3455799999999999999999999999999999999999997421100000 0
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
T Consensus 947 -------------------------------------------------------------------------------- 946 (1197)
T PRK09959 947 -------------------------------------------------------------------------------- 946 (1197)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEcCCH
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 719 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~ 719 (856)
. .. . .|. ....+.+||||||++
T Consensus 947 -~-----------------~~--~------~~~--------------------------------~~~~~~~iLivdd~~ 968 (1197)
T PRK09959 947 -A-----------------KA--E------QPI--------------------------------TLPEKLSILIADDHP 968 (1197)
T ss_pred -c-----------------cc--c------ccc--------------------------------ccccCceEEEcCCCH
Confidence 0 00 0 000 001134899999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcc
Q 003018 720 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYEN 799 (856)
Q Consensus 720 ~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~ 799 (856)
.++..+..+|+..|+.|.++.+|.+|++.+. .+.||+||+|++||+|||++++++||+.
T Consensus 969 ~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~i~~~-------------------- 1027 (1197)
T PRK09959 969 TNRLLLKRQLNLLGYDVDEATDGVQALHKVS-MQHYDLLITDVNMPNMDGFELTRKLREQ-------------------- 1027 (1197)
T ss_pred HHHHHHHHHHHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc--------------------
Confidence 9999999999999999999999999999885 5779999999999999999999999963
Q ss_pred CCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 800 VSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 800 ~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+++|||++|+........+|+++|+++||.||++.++|...|.++..
T Consensus 1028 --~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1028 --NSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred --CCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 246899999999999999999999999999999999999999987653
No 9
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=3.4e-47 Score=464.01 Aligned_cols=240 Identities=20% Similarity=0.321 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003018 244 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 323 (856)
Q Consensus 244 ~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~ 323 (856)
+++.+++++++++.++|++|+++|||||||||++|.|++++|.+...+++++++++.+..++++|..+|+++++++|+++
T Consensus 434 ~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~ 513 (894)
T PRK10618 434 KKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLET 513 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35666777888889999999999999999999999999999988777888999999999999999999999999999999
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEe
Q 003018 324 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 403 (856)
Q Consensus 324 g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~ 403 (856)
|+..++..+|++.+++++++..+...+..|++.+.+.++...+..+.+|+.+|+||+.||++||+|||+.|.|.|.+...
T Consensus 514 ~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~~~ 593 (894)
T PRK10618 514 QDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVDQD 593 (894)
T ss_pred CCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc
Confidence 99999999999999999999999999999999999988766677899999999999999999999999999988877532
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCcc
Q 003018 404 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483 (856)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 483 (856)
.. ....+.|+|.|||+|||++.+++||+||
T Consensus 594 ~~--------------------------------------------------~~~~l~I~V~DtG~GI~~e~l~~IFePF 623 (894)
T PRK10618 594 ES--------------------------------------------------SPDRLTIRILDTGAGVSIKELDNLHFPF 623 (894)
T ss_pred cC--------------------------------------------------CCcEEEEEEEECCCCCCHHHHHHhcCcc
Confidence 11 1135789999999999999999999999
Q ss_pred ccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 003018 484 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 484 ~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 534 (856)
++.+. ..+..+|+||||+|||+||++|||+|+++|.+|+||+|+|++|+.
T Consensus 624 ~t~~~-~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~ 673 (894)
T PRK10618 624 LNQTQ-GDRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKML 673 (894)
T ss_pred ccCCC-CCCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEcc
Confidence 98643 234567999999999999999999999999999999999999973
No 10
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=1e-44 Score=447.46 Aligned_cols=363 Identities=19% Similarity=0.281 Sum_probs=291.9
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 003018 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDT-ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337 (856)
Q Consensus 259 aks~fla~iSHElRTPL~~I~g~~~lL~~~-~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~ 337 (856)
+..+|++++||||||||++|.|+++++.+. ......+++++.+..+++++..+|++++++++...+ ...++++.+
T Consensus 449 ~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~----~~~~~~l~~ 524 (828)
T PRK13837 449 AVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGER----NTKPFDLSE 524 (828)
T ss_pred HHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCcEEcHHH
Confidence 567899999999999999999999987654 234567889999999999999999999999986544 346799999
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCC-CCeEEEEEEEeeccccchhhhhhh
Q 003018 338 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETEL 416 (856)
Q Consensus 338 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~~ 416 (856)
++++++..+... ..+++.+.+..++. +..+.+|+.+|.||+.||++||+||++ .|.|.|++..........
T Consensus 525 ll~~~~~~~~~~-~~~~i~l~~~~~~~-~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~------ 596 (828)
T PRK13837 525 LVTEIAPLLRVS-LPPGVELDFDQDQE-PAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKV------ 596 (828)
T ss_pred HHHHHHHHHHHH-ccCCcEEEEEeCCC-CceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccc------
Confidence 999999988753 45788888877654 447899999999999999999999985 567777765432100000
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCc
Q 003018 417 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 496 (856)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~G 496 (856)
. ......+...+.|+|+|+|+|||++.+++||+||++.+. +|
T Consensus 597 ------~--------------------------~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~------~G 638 (828)
T PRK13837 597 ------L--------------------------SHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA------GG 638 (828)
T ss_pred ------c--------------------------ccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC------CC
Confidence 0 000011234688999999999999999999999997432 79
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEeCCchhhhHH
Q 003018 497 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKV 576 (856)
Q Consensus 497 tGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lvvd~~~~~~~v 576 (856)
+||||+|||++++.|||+|+++|.+|+||+|+|++|.......... .
T Consensus 639 ~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~-----------~---------------------- 685 (828)
T PRK13837 639 TGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQ-----------A---------------------- 685 (828)
T ss_pred CcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCcc-----------c----------------------
Confidence 9999999999999999999999999999999999997432110000 0
Q ss_pred HHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCceEEEEeccCCccccC
Q 003018 577 SRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 656 (856)
Q Consensus 577 ~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 656 (856)
T Consensus 686 -------------------------------------------------------------------------------- 685 (828)
T PRK13837 686 -------------------------------------------------------------------------------- 685 (828)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEcCCHHHHHHHHHHHhhcCCEE
Q 003018 657 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAV 736 (856)
Q Consensus 657 ~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v 736 (856)
... |. . .....+.+|||||||+.++..+...|...||.|
T Consensus 686 -~~~----------~~------------------------~------~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~~v 724 (828)
T PRK13837 686 -FFG----------PG------------------------P------LPRGRGETVLLVEPDDATLERYEEKLAALGYEP 724 (828)
T ss_pred -cCC----------Cc------------------------c------cCCCCCCEEEEEcCCHHHHHHHHHHHHHCCCEE
Confidence 000 00 0 000124589999999999999999999999999
Q ss_pred EEEcCHHHHHHHhCCC-CCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCC
Q 003018 737 VCVERGKKATELLMPP-HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815 (856)
Q Consensus 737 ~~a~~g~eA~~~l~~~-~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~ 815 (856)
+.+.++.+|++.+... ..||+||+ .||.|+|+++++.|+.. .+.+|||++|+...
T Consensus 725 ~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~----------------------~~~ipIIvls~~~~ 780 (828)
T PRK13837 725 VGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAA----------------------APTLPIILGGNSKT 780 (828)
T ss_pred EEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhh----------------------CCCCCEEEEeCCCc
Confidence 9999999999988432 34899999 79999999999999863 34689999999999
Q ss_pred HHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 816 QATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 816 ~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.....+++.+| ++|+.||++.++|..+|.+++..
T Consensus 781 ~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 781 MALSPDLLASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred hhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 99999999999 99999999999999999998764
No 11
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-42 Score=353.87 Aligned_cols=226 Identities=27% Similarity=0.477 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEee
Q 003018 256 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT--QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 333 (856)
Q Consensus 256 a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~--q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~ 333 (856)
.++.+..|.|++||||||||+++.++++.|.+...... ...++..-+...++|.+||||+|.+||++....+++.+-+
T Consensus 221 ~e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~i 300 (459)
T COG5002 221 VERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWI 300 (459)
T ss_pred HHHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHH
Confidence 34567789999999999999999999999988766443 5679999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhhhcCcE-EEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEEeeccccchh
Q 003018 334 NLRAILDDVLSLFSGKSQDKGVE-LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIE 411 (856)
Q Consensus 334 ~L~~ll~~v~~~~~~~a~~k~i~-l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~ 411 (856)
|+...+..++..|.....+..+. +.-.+ +..+.++..|+.++-||+.|+++||+||+|.| .|++.+...
T Consensus 301 nft~fl~~ii~R~e~~~~~e~~~~~vR~~-p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~-------- 371 (459)
T COG5002 301 NFTAFLNEIINRFEMILKKETIARFVRDI-PKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQR-------- 371 (459)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHhcC-CCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeee--------
Confidence 99999999999998775544443 33233 44567899999999999999999999999864 677766421
Q ss_pred hhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCC
Q 003018 412 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491 (856)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~ 491 (856)
..++.|+|.|.|.|||.+++++||++||++|..++
T Consensus 372 ---------------------------------------------~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARs 406 (459)
T COG5002 372 ---------------------------------------------ETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARS 406 (459)
T ss_pred ---------------------------------------------CcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhh
Confidence 12578999999999999999999999999999999
Q ss_pred CCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 492 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 492 ~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
|..|||||||+|+|.+|+.|||.||.+|+.|+||+|+|++|...
T Consensus 407 R~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~ 450 (459)
T COG5002 407 RKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSG 450 (459)
T ss_pred hcCCCCchhHHHHHHHHHHhCCeEEEecccCCceEEEEEecccC
Confidence 99999999999999999999999999999999999999999854
No 12
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=7.9e-38 Score=368.86 Aligned_cols=369 Identities=20% Similarity=0.239 Sum_probs=285.7
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEee
Q 003018 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-----LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 333 (856)
Q Consensus 259 aks~fla~iSHElRTPL~~I~g~~~lL~~~~-----l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~ 333 (856)
...++++.++||+||||+.|.|+++++.... ......++++.+...++++..++++++++++.. .+....+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 3457899999999999999999999875321 223456788889999999999999999998743 3445678
Q ss_pred cHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEeeccccchhh
Q 003018 334 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEV 412 (856)
Q Consensus 334 ~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~ 412 (856)
++..+++.+...+.. ...+++.+.+.+++..+ .+.+|+.++.|++.||+.||+||++. |.|.|.+........
T Consensus 238 ~l~~~i~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~---- 311 (540)
T PRK13557 238 NLNGLVSGMGELAER-TLGDAVTIETDLAPDLW-NCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDE---- 311 (540)
T ss_pred CHHHHHHHHHHHHHH-hcCCCeEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcc----
Confidence 999999988776553 34577888777766554 47789999999999999999999965 445444422110000
Q ss_pred hhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCC
Q 003018 413 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492 (856)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~ 492 (856)
....| ....+...+.|+|.|+|+|||++.++++|+||++.+.
T Consensus 312 ------------------~~~~~----------------~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~---- 353 (540)
T PRK13557 312 ------------------DLAMY----------------HGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE---- 353 (540)
T ss_pred ------------------ccccc----------------cCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----
Confidence 00000 0011223578999999999999999999999997542
Q ss_pred CCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEeCCchh
Q 003018 493 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPI 572 (856)
Q Consensus 493 ~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lvvd~~~~ 572 (856)
..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|......... +.
T Consensus 354 ~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~--------------~~--------------- 404 (540)
T PRK13557 354 EGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPE--------------QE--------------- 404 (540)
T ss_pred CCCCCCccHHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCC--------------CC---------------
Confidence 3469999999999999999999999999999999999998732110000 00
Q ss_pred hhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCceEEEEeccCCc
Q 003018 573 RAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 652 (856)
Q Consensus 573 ~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 652 (856)
T Consensus 405 -------------------------------------------------------------------------------- 404 (540)
T PRK13557 405 -------------------------------------------------------------------------------- 404 (540)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEcCCHHHHHHHHHHHhhc
Q 003018 653 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRY 732 (856)
Q Consensus 653 ~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~~l~~~L~~~ 732 (856)
.... ......+++||||||++..+..+..+|+..
T Consensus 405 -----~~~~-----------------------------------------~~~~~~~~~iliv~~~~~~~~~l~~~l~~~ 438 (540)
T PRK13557 405 -----PKAR-----------------------------------------AIDRGGTETILIVDDRPDVAELARMILEDF 438 (540)
T ss_pred -----CCCc-----------------------------------------ccccCCCceEEEEcCcHHHHHHHHHHHHhc
Confidence 0000 000112468999999999999999999999
Q ss_pred CCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC-CCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEe
Q 003018 733 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMT 811 (856)
Q Consensus 733 g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~-mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalT 811 (856)
|+.+..+.++.+|++.+.....||+|++|..||. ++|+++++.||+. .+.+|||++|
T Consensus 439 ~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~~l~~~----------------------~~~~~ii~~~ 496 (540)
T PRK13557 439 GYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLAREARRR----------------------QPKIKVLLTT 496 (540)
T ss_pred CCeEEEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHHHHHHh----------------------CCCCcEEEEc
Confidence 9999999999999998753346999999999997 9999999999973 2468999999
Q ss_pred cCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCCC
Q 003018 812 ADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852 (856)
Q Consensus 812 a~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~~ 852 (856)
..........++.+|+++|+.||++.++|...+.+......
T Consensus 497 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 537 (540)
T PRK13557 497 GYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDGPT 537 (540)
T ss_pred CCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcCCC
Confidence 99888888889999999999999999999999998876543
No 13
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=2.2e-37 Score=349.43 Aligned_cols=243 Identities=26% Similarity=0.383 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCC-------HHHHHHHHHHHHHHHHHH
Q 003018 237 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-------VTQQDYVRTAQASGKALV 309 (856)
Q Consensus 237 ~~~~~~~~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-------~~q~~~l~~i~~~~~~L~ 309 (856)
.++.+....+.+.++++++..+++.+|++++||||||||++|.+++++|.+...+ +..+++++.+..+.++|.
T Consensus 128 ~~l~~~~~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (380)
T PRK09303 128 LQLSDELFVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIE 207 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666667777899999999999999999999999999754332 236778899999999999
Q ss_pred HHHHHHHHHHHHhcCCceeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhh
Q 003018 310 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK 389 (856)
Q Consensus 310 ~lIndlLd~skie~g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiK 389 (856)
.++++++++++.+.+...++..++|+.+++++++..+...+..+++.+.++++...| .+.+|+.+|+||+.||++||+|
T Consensus 208 ~li~~ll~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NAik 286 (380)
T PRK09303 208 RLITDLLEVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNAIK 286 (380)
T ss_pred HHHHHHHHHHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999877766 5889999999999999999999
Q ss_pred cCCC-CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecC
Q 003018 390 FTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 468 (856)
Q Consensus 390 fT~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG 468 (856)
|++. |.|.+.+... +...+.|+|.|+|
T Consensus 287 ~~~~~~~I~i~~~~~----------------------------------------------------~~~~v~i~V~D~G 314 (380)
T PRK09303 287 YTPEGGTITLSMLHR----------------------------------------------------TTQKVQVSICDTG 314 (380)
T ss_pred cCCCCceEEEEEEec----------------------------------------------------CCCEEEEEEEEcC
Confidence 9976 5665554211 1124789999999
Q ss_pred CCCChhhHhhhcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 003018 469 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 469 ~GI~~e~~~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 534 (856)
+|||++.+++||+|||+.+. ++..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|+.
T Consensus 315 ~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 315 PGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQGSCFHFTLPVY 378 (380)
T ss_pred CCCCHHHHHHHccCceeCCC--CCCCCcccccHHHHHHHHHHcCCEEEEEecCCCccEEEEEEecC
Confidence 99999999999999998765 44567999999999999999999999999999999999999974
No 14
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-38 Score=356.85 Aligned_cols=225 Identities=24% Similarity=0.429 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCC--CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEe
Q 003018 254 EAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDVT-QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEA 330 (856)
Q Consensus 254 e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~--~l~~~-q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~ 330 (856)
.+.++.++.||+++||||||||++|.|.++.|... .++++ +.+.+..|...+++|..+|++|||++|+++|.+.++.
T Consensus 654 ~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~ 733 (890)
T COG2205 654 AERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKL 733 (890)
T ss_pred HHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccc
Confidence 34567789999999999999999999999998764 34444 7889999999999999999999999999999999999
Q ss_pred EeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCe-EEEEEEEeeccccc
Q 003018 331 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-IFVTVYLVEEVVDS 409 (856)
Q Consensus 331 ~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~-I~v~v~~~~~~~~~ 409 (856)
.+..+.+++.+++.........+. +.+.+++++| .+.+|...|.|||.|||+||+||++.|. |.|.++...
T Consensus 734 ~~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~----- 805 (890)
T COG2205 734 DWVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVER----- 805 (890)
T ss_pred chhhHHHHHHHHHHHhhhhcCCce--EEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEec-----
Confidence 999999999999987776655444 5666777776 6889999999999999999999998875 777775422
Q ss_pred hhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCC
Q 003018 410 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 489 (856)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s 489 (856)
.+++|+|.|+|+|||++++++||++||+.++.
T Consensus 806 ------------------------------------------------~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~ 837 (890)
T COG2205 806 ------------------------------------------------ENVVFSVIDEGPGIPEGELERIFDKFYRGNKE 837 (890)
T ss_pred ------------------------------------------------ceEEEEEEeCCCCCChhHHHHhhhhhhcCCCC
Confidence 35889999999999999999999999998763
Q ss_pred CCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCC
Q 003018 490 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536 (856)
Q Consensus 490 ~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~ 536 (856)
.. ..|+|||||||+.+|+.|||+|++.+.+++|++|+|++|....
T Consensus 838 ~~--~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 838 SA--TRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred CC--CCCccccHHHHHHHHHHcCCeEEEEEcCCCceEEEEEeecCCC
Confidence 33 6799999999999999999999999999999999999998643
No 15
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=6.7e-34 Score=326.80 Aligned_cols=221 Identities=26% Similarity=0.382 Sum_probs=190.5
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHH
Q 003018 258 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 336 (856)
Q Consensus 258 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l-~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~ 336 (856)
+++.+|++++||||||||++|.|+++++.+... ++...++++.+..++++|..++++++++++++.+........+++.
T Consensus 202 ~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~ 281 (430)
T PRK11006 202 GARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVP 281 (430)
T ss_pred HHHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHH
Confidence 356689999999999999999999999876543 4456788999999999999999999999999998877667789999
Q ss_pred HHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEEeeccccchhhhhh
Q 003018 337 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEVETE 415 (856)
Q Consensus 337 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~~~~~ 415 (856)
.+++.+...+...+ .+++.+.+.+++.. .+.+|+.+|+||+.||++||+||++.| .|.|++...
T Consensus 282 ~~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~------------ 346 (430)
T PRK11006 282 MMLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRV------------ 346 (430)
T ss_pred HHHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc------------
Confidence 99998877766555 67788888776554 578999999999999999999999764 566654321
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCC
Q 003018 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 495 (856)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~ 495 (856)
...+.|+|+|+|+|||++.++++|+|||+.+.+.++..+
T Consensus 347 -----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~ 385 (430)
T PRK11006 347 -----------------------------------------PQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTG 385 (430)
T ss_pred -----------------------------------------CCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCC
Confidence 124679999999999999999999999998887777788
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 003018 496 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 496 GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 534 (856)
|+||||+|||++++.|||+|+++|.+|+||+|+|++|..
T Consensus 386 G~GLGL~ivk~iv~~~gG~i~i~s~~~~Gt~f~i~lP~~ 424 (430)
T PRK11006 386 GSGLGLAIVKHALSHHDSRLEIESEVGKGTRFSFVLPER 424 (430)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEecCCCceEEEEEechH
Confidence 999999999999999999999999999999999999863
No 16
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=8.8e-33 Score=317.64 Aligned_cols=229 Identities=25% Similarity=0.374 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003018 245 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 324 (856)
Q Consensus 245 ~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g 324 (856)
.++++.++.++..+.+.+|++++||||||||+.|.+.++++.+. +..+. +.+.+..++|..++++++.++|++.+
T Consensus 197 ~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~--~~~~~---~~i~~~~~~l~~li~~ll~~~rl~~~ 271 (433)
T PRK10604 197 AFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL--SAAES---QALNRDIGQLEALIEELLTYARLDRP 271 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCC--CcHHH---HHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34455566666677788999999999999999999999988632 22222 23777889999999999999999999
Q ss_pred CceeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEee
Q 003018 325 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 404 (856)
Q Consensus 325 ~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~ 404 (856)
...+...++++.+++++++..+......+++++.+..+ +..+.+|+..+++|+.||++||+||+. |.|.|++...+
T Consensus 272 ~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~~~~---~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~~~~~~ 347 (433)
T PRK10604 272 QNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDTPHQ---GDYGALDMRLMERVLDNLLNNALRYAH-SRVRVSLLLDG 347 (433)
T ss_pred CcccCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEecCC---CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEC
Confidence 99888899999999999999998888777777765322 335678999999999999999999985 77777764321
Q ss_pred ccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccc
Q 003018 405 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484 (856)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~ 484 (856)
..+.|+|+|+|+|||++.+++||+||+
T Consensus 348 -----------------------------------------------------~~~~I~V~D~G~Gi~~e~~~~if~~f~ 374 (433)
T PRK10604 348 -----------------------------------------------------NQACLIVEDDGPGIPPEERERVFEPFV 374 (433)
T ss_pred -----------------------------------------------------CEEEEEEEEcCCCCCHHHHhhcCCCCc
Confidence 136899999999999999999999999
Q ss_pred cCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 485 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 485 q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
+.+.++++..+|+||||+|||++++.|||+|.++|.+++|++|++++|...
T Consensus 375 r~~~~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 375 RLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVWH 425 (433)
T ss_pred cCCCCCCCCCCCccchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeCCC
Confidence 998887777889999999999999999999999999999999999999754
No 17
>PRK10815 sensor protein PhoQ; Provisional
Probab=100.00 E-value=9.1e-32 Score=312.55 Aligned_cols=220 Identities=21% Similarity=0.298 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeE
Q 003018 253 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 331 (856)
Q Consensus 253 ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~-l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~ 331 (856)
.++......+|++++||||||||+.|.++++.|.+.. .+. .+....+.+...++..+++++++.++.+++...+...
T Consensus 259 ~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~~--~~~~~~~~~~i~ri~~~i~~ll~~~~~~~~~~~~~~~ 336 (485)
T PRK10815 259 ERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMSV--EQAEPIMLEQISRISQQIGYYLHRASMRSEHNLLSRE 336 (485)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc
Confidence 3344445567999999999999999999999987654 222 2334566778889999999999999999998888888
Q ss_pred eecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchh
Q 003018 332 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 411 (856)
Q Consensus 332 ~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~ 411 (856)
.+++..+++++++.+...+..+++.+.+.+++.. .+.+|+..|.||+.||++||+||+.+ .|.|++...
T Consensus 337 ~~~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~-~i~I~~~~~-------- 405 (485)
T PRK10815 337 LHSVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE-FVEISARQT-------- 405 (485)
T ss_pred eecHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC-cEEEEEEEe--------
Confidence 9999999999999999999999999998876543 57799999999999999999999965 355554321
Q ss_pred hhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCC
Q 003018 412 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491 (856)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~ 491 (856)
...+.|+|+|+|+|||++.++++|+||++.+.+
T Consensus 406 ---------------------------------------------~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~-- 438 (485)
T PRK10815 406 ---------------------------------------------DEHLHIVVEDDGPGIPESKRELIFDRGQRADTL-- 438 (485)
T ss_pred ---------------------------------------------CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC--
Confidence 124689999999999999999999999986542
Q ss_pred CCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 003018 492 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 492 ~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 534 (856)
.+|+||||+|||++++.|||+|.++|.+++||+|++++|..
T Consensus 439 --~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 439 --RPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIFGRQ 479 (485)
T ss_pred --CCCcchhHHHHHHHHHHcCCEEEEEECCCCEEEEEEEEcCC
Confidence 35999999999999999999999999999999999999864
No 18
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=100.00 E-value=7.6e-32 Score=313.51 Aligned_cols=215 Identities=21% Similarity=0.289 Sum_probs=167.0
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHH
Q 003018 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 338 (856)
Q Consensus 259 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~l 338 (856)
...++++.++|||||||++|.|++++|.....+..+......+......+..++..+.++. .........++|+..+
T Consensus 275 ~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~dl~~~ 351 (494)
T TIGR02938 275 AIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVI---PQSPQEIVVPVNLNQI 351 (494)
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhh---ccCcccccccccHHHH
Confidence 3456788899999999999999999987653332223333333333333333333333332 2333445678999999
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCe-----EEEEEEEeeccccchhhh
Q 003018 339 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-----IFVTVYLVEEVVDSIEVE 413 (856)
Q Consensus 339 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~-----I~v~v~~~~~~~~~~~~~ 413 (856)
+++++..+...+..+++.+.+..++..| .+.+|+.+|+|||.||++||+||++.|. |.+.+..
T Consensus 352 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~----------- 419 (494)
T TIGR02938 352 LRDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTAL----------- 419 (494)
T ss_pred HHHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEe-----------
Confidence 9999999999999999999998877666 5789999999999999999999996652 3333211
Q ss_pred hhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCC
Q 003018 414 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 493 (856)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~ 493 (856)
+...+.|+|+|||+|||++.+.+||+||++.+.. .
T Consensus 420 ------------------------------------------~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~---~ 454 (494)
T TIGR02938 420 ------------------------------------------NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG---S 454 (494)
T ss_pred ------------------------------------------cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC---C
Confidence 1125789999999999999999999999987643 2
Q ss_pred CCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 003018 494 HGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533 (856)
Q Consensus 494 ~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 533 (856)
.+||||||+|||.||++|||+|+++|.+|+||+|+|++|+
T Consensus 455 ~~G~GlGL~i~~~iv~~~gG~i~~~s~~~~G~~f~i~lp~ 494 (494)
T TIGR02938 455 RKHIGMGLSVAQEIVADHGGIIDLDDDYSEGCRIIVEFRV 494 (494)
T ss_pred CCCCcccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEecC
Confidence 6799999999999999999999999999999999999985
No 19
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=100.00 E-value=4.8e-31 Score=305.95 Aligned_cols=236 Identities=25% Similarity=0.427 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003018 244 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 323 (856)
Q Consensus 244 ~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~ 323 (856)
+.++++..+++.....+.+|++.+|||+||||+.+.+.++.+.+... ....+.+..+....++|..++++++++++.+.
T Consensus 224 ~~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~-~~~~~~l~~~~~~~~~l~~li~~l~~l~~~~~ 302 (466)
T PRK10549 224 QDFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVR-KFTPESVASLQAEVGTLTKLVDDLHQLSLSDE 302 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34455566666677778899999999999999999999999876532 22345678888889999999999999999999
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEE
Q 003018 324 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYL 402 (856)
Q Consensus 324 g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~ 402 (856)
+.+.+...++++.+++++++..+......+++++.+.+++.. .+.+|+.++.|++.||++||+||++. |.|.|.+..
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~ 380 (466)
T PRK10549 303 GALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQ 380 (466)
T ss_pred CCcccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 999999999999999999999999999999999998876543 46799999999999999999999965 567776643
Q ss_pred eeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCc
Q 003018 403 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 482 (856)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~p 482 (856)
.+ ..+.|.|+|+|+|||++.++++|+|
T Consensus 381 ~~-----------------------------------------------------~~~~i~V~D~G~Gi~~e~~~~lf~~ 407 (466)
T PRK10549 381 RD-----------------------------------------------------KTLRLTFADSAPGVSDEQLQKLFER 407 (466)
T ss_pred cC-----------------------------------------------------CEEEEEEEecCCCcCHHHHHHhccC
Confidence 11 2478999999999999999999999
Q ss_pred cccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 483 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 483 F~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
||+.+.+..+..+|+||||+||+++++.|||++.++|.++.||+|+|.+|+..
T Consensus 408 ~~~~~~~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 408 FYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLER 460 (466)
T ss_pred cccCCCCcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccCCC
Confidence 99998776677789999999999999999999999999999999999999754
No 20
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=5.1e-31 Score=325.30 Aligned_cols=223 Identities=22% Similarity=0.361 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEe
Q 003018 255 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL--DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVS 332 (856)
Q Consensus 255 ~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l--~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~ 332 (856)
+.++.|.+|++.+||||||||++|.|+++++..... .....++++.+.....++..+++++++++++++|.+.++..+
T Consensus 659 e~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~ 738 (895)
T PRK10490 659 EREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEW 738 (895)
T ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccc
Confidence 345678899999999999999999999998864321 223446788899999999999999999999999999999999
Q ss_pred ecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEEeeccccchh
Q 003018 333 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIE 411 (856)
Q Consensus 333 ~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~ 411 (856)
+++.+++++++..+......+++.+. +++..| .+.+|+.+|.||+.||++||+||++.| .|.|++...+
T Consensus 739 ~~L~eli~~~l~~l~~~~~~~~i~l~--~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~~------- 808 (895)
T PRK10490 739 LTLEEVVGSALQMLEPGLSGHPINLS--LPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEG------- 808 (895)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCEEEE--cCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEeC-------
Confidence 99999999999999888777766654 455544 688999999999999999999999765 5666553211
Q ss_pred hhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCC
Q 003018 412 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491 (856)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~ 491 (856)
..+.|+|.|+|+|||++.+++||+||++.+..
T Consensus 809 ----------------------------------------------~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~-- 840 (895)
T PRK10490 809 ----------------------------------------------ERLQLDVWDNGPGIPPGQEQLIFDKFARGNKE-- 840 (895)
T ss_pred ----------------------------------------------CEEEEEEEECCCCCCHHHHHHhcCCCccCCCC--
Confidence 24789999999999999999999999986542
Q ss_pred CCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 492 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 492 ~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
+..+|+||||+|||++++.|||+|+++|.+++||+|+|++|+..
T Consensus 841 ~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 841 SAIPGVGLGLAICRAIVEVHGGTIWAENRPEGGACFRVTLPLET 884 (895)
T ss_pred CCCCCccHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeECCC
Confidence 34569999999999999999999999999999999999999853
No 21
>PRK10364 sensor protein ZraS; Provisional
Probab=100.00 E-value=2.7e-30 Score=299.25 Aligned_cols=213 Identities=26% Similarity=0.437 Sum_probs=183.6
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 003018 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337 (856)
Q Consensus 259 aks~fla~iSHElRTPL~~I~g~~~lL~~~~-l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~ 337 (856)
+..+|.+++||||||||++|.|+++++.+.. ...+.+++++.+....+++..++++++++++.. .....++++.+
T Consensus 236 ~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~~ 311 (457)
T PRK10364 236 ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLND 311 (457)
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHHH
Confidence 4567999999999999999999999987643 335567788999999999999999999999843 34556899999
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCC-CCeEEEEEEEeeccccchhhhhhh
Q 003018 338 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETEL 416 (856)
Q Consensus 338 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~~ 416 (856)
++++++..+...+..+++.+.+..++..+ .+.+|+.+|.|++.||++||+||+. .|.|.|.+...+
T Consensus 312 ~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~------------ 378 (457)
T PRK10364 312 LINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESG------------ 378 (457)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEeC------------
Confidence 99999999999999999999998876554 5778999999999999999999975 466766664211
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCc
Q 003018 417 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 496 (856)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~G 496 (856)
..+.|.|+|+|+|||++.++++|++|++.+ .+|
T Consensus 379 -----------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k------~~g 411 (457)
T PRK10364 379 -----------------------------------------AGVKISVTDSGKGIAADQLEAIFTPYFTTK------AEG 411 (457)
T ss_pred -----------------------------------------CeEEEEEEECCCCCCHHHHHHHhCccccCC------CCC
Confidence 137899999999999999999999998542 368
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 497 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 497 tGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
+||||+|||++++.|||+|+++|.+|.||+|++++|...
T Consensus 412 ~GlGL~iv~~~v~~~gG~i~i~s~~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 412 TGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPVNI 450 (457)
T ss_pred CcccHHHHHHHHHHCCCEEEEEeCCCCcEEEEEEecCCC
Confidence 999999999999999999999999999999999999853
No 22
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.98 E-value=3.9e-30 Score=288.00 Aligned_cols=227 Identities=19% Similarity=0.255 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003018 245 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 324 (856)
Q Consensus 245 ~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g 324 (856)
.+.++.++.+...+.+.+|++++||||||||++|.+.++++.+... . ..+.+....+++..++++++++++.+..
T Consensus 122 ~~n~~~~~l~~~~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~----~~~~~~~~~~~l~~~i~~ll~~~r~~~~ 196 (356)
T PRK10755 122 ALNQLVSRLTSTLDQERLFTADVAHELRTPLAGIRLHLELLEKQHH-I----DVAPLIARLDQMMHTVEQLLQLARAGQS 196 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc-h----hHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3444455555555666789999999999999999999998765432 1 2334455667899999999999998876
Q ss_pred CceeEeEeecH-HHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEE
Q 003018 325 KLELEAVSFNL-RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYL 402 (856)
Q Consensus 325 ~~~l~~~~~~L-~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~ 402 (856)
........+++ .+++..+...+...+..+++.+.+...+ .+..+.+|+.++++|+.||++||+||++. |.|.|.+..
T Consensus 197 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~ 275 (356)
T PRK10755 197 FSSGHYQTVKLLEDVILPSQDELSEMLEQRQQTLLLPESA-ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQ 275 (356)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHhCCeEEeccCC-CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEE
Confidence 66666667888 8999998888988888898888764222 34568899999999999999999999965 456666532
Q ss_pred eeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCc
Q 003018 403 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 482 (856)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~p 482 (856)
.+ ..+.|+|+|+|+||+++.++++|+|
T Consensus 276 ~~-----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~ 302 (356)
T PRK10755 276 ED-----------------------------------------------------GGAVLAVEDEGPGIDESKCGELSKA 302 (356)
T ss_pred cC-----------------------------------------------------CEEEEEEEECCCCCCHHHHHHhCCC
Confidence 11 2468999999999999999999999
Q ss_pred cccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCC-CceEEEEEEEeC
Q 003018 483 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAVFG 534 (856)
Q Consensus 483 F~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g-~GstF~~~lp~~ 534 (856)
|++.+. ..+|+||||+||+++++.|||+|+++|.++ +||+|++++|..
T Consensus 303 f~~~~~----~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~ 351 (356)
T PRK10755 303 FVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLPKA 351 (356)
T ss_pred eEeCCC----CCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEecCC
Confidence 998643 357999999999999999999999999998 999999999853
No 23
>PRK09835 sensor kinase CusS; Provisional
Probab=99.98 E-value=8.5e-30 Score=296.69 Aligned_cols=232 Identities=26% Similarity=0.425 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003018 245 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAKVES 323 (856)
Q Consensus 245 ~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l-~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~ 323 (856)
.++++.++.+.....+.+|++++|||||||++.+.+.++.+..... ..+..+.+..+.....++..++++++++++.+.
T Consensus 247 ~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~~ 326 (482)
T PRK09835 247 SFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADN 326 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445556666666778899999999999999999999998765433 334556677777888999999999999999999
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEE
Q 003018 324 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYL 402 (856)
Q Consensus 324 g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~ 402 (856)
+.......++++.++++++.+.+...+.++++.+.+..+ +..+.+|+.+|+||+.||++||+||++.| .|.|++..
T Consensus 327 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~ 403 (482)
T PRK09835 327 NQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVGD---PCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQE 403 (482)
T ss_pred CCCCCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeCC---CcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEE
Confidence 988888889999999999999999998899988876532 34688999999999999999999999765 47666542
Q ss_pred eeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCc
Q 003018 403 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 482 (856)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~p 482 (856)
.+ ..+.|+|+|+|+|||++.++++|+|
T Consensus 404 ~~-----------------------------------------------------~~~~i~v~d~G~gi~~~~~~~if~~ 430 (482)
T PRK09835 404 VD-----------------------------------------------------HQVQLVVENPGTPIAPEHLPRLFDR 430 (482)
T ss_pred eC-----------------------------------------------------CEEEEEEEECCCCcCHHHHHHHhCC
Confidence 11 1367999999999999999999999
Q ss_pred cccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 003018 483 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533 (856)
Q Consensus 483 F~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 533 (856)
||+.+.+.++..+|+||||+||+++++.|||+|+++|.+ .|++|++++|.
T Consensus 431 f~~~~~~~~~~~~g~GlGL~i~~~i~~~~~g~i~~~s~~-~g~~~~i~lP~ 480 (482)
T PRK09835 431 FYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDA-RGTRFVISLPR 480 (482)
T ss_pred cccCCCCCCCCCCCcchHHHHHHHHHHHCCCEEEEEECC-CcEEEEEEeeC
Confidence 999987766667899999999999999999999999974 69999999985
No 24
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.97 E-value=8.1e-30 Score=307.77 Aligned_cols=230 Identities=20% Similarity=0.311 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 003018 247 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKL 326 (856)
Q Consensus 247 ~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~ 326 (856)
+++..++++......+|.+.+|||+||||+.|.+.++.+.....+.+..++++.+..+.++|..++++++++++++.+..
T Consensus 472 n~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~~~~ 551 (703)
T TIGR03785 472 AQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMSEATRLEQAIQ 551 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 34444556666667789999999999999999999999987777778888999999999999999999999999999888
Q ss_pred eeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEeec
Q 003018 327 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEE 405 (856)
Q Consensus 327 ~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~ 405 (856)
..+..++|+.+++++++..+......+++.+.+.. . +..+.+|+..|.||+.||++||+||++. |.|.|++...
T Consensus 552 ~~~~~~~dl~~ll~~~i~~~~~~~~~~~i~l~i~~--~-~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~~-- 626 (703)
T TIGR03785 552 SAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNIPE--T-PLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQN-- 626 (703)
T ss_pred cccceeecHHHHHHHHHHHHHHHhhcCCEEEEecC--C-CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEEc--
Confidence 88889999999999999999988888877776543 2 3368899999999999999999999965 4566655321
Q ss_pred cccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCcccc
Q 003018 406 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 485 (856)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q 485 (856)
...+.|+|+|+|+|||++.+++||+||++
T Consensus 627 ---------------------------------------------------~~~v~I~V~D~G~GI~~e~~~~IFe~F~t 655 (703)
T TIGR03785 627 ---------------------------------------------------KSHALLTVSNEGPPLPEDMGEQLFDSMVS 655 (703)
T ss_pred ---------------------------------------------------CCEEEEEEEEcCCCCCHHHHHHHhCCCee
Confidence 12478999999999999999999999998
Q ss_pred CCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCC-CceEEEEEEE
Q 003018 486 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAV 532 (856)
Q Consensus 486 ~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g-~GstF~~~lp 532 (856)
.+...+...+|+||||+|||++++.|||+|.++|.++ .|++|+|++|
T Consensus 656 ~~~~~~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 656 VRDQGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred cCCCCCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 7655555556899999999999999999999999975 8999999986
No 25
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.97 E-value=1.1e-29 Score=293.42 Aligned_cols=230 Identities=29% Similarity=0.447 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003018 245 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVES 323 (856)
Q Consensus 245 ~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-~~q~~~l~~i~~~~~~L~~lIndlLd~skie~ 323 (856)
.+..+.+++++......+|.+++||||||||+.+.+.++.+.....+ ....++++.+.....++..++++++++++++.
T Consensus 226 ~~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 305 (457)
T TIGR01386 226 SFNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARADN 305 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555666666667899999999999999999999987654433 34467788888888999999999999999999
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEE
Q 003018 324 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYL 402 (856)
Q Consensus 324 g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~ 402 (856)
+.......++++.++++++++.+...+.++++++.+.. . ..+.+|+..|.+++.||++||+||++. |.|.|++..
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~~ 381 (457)
T TIGR01386 306 GQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVEG--E--GLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIER 381 (457)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHHHhCCeEEEecC--C--ceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEEe
Confidence 98888889999999999999999988899998876643 2 468899999999999999999999965 577766542
Q ss_pred eeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCc
Q 003018 403 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 482 (856)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~p 482 (856)
. ...+.|+|+|+|+|||++.++++|+|
T Consensus 382 ~-----------------------------------------------------~~~~~i~v~D~G~g~~~~~~~~~~~~ 408 (457)
T TIGR01386 382 R-----------------------------------------------------SDEVRVSVSNPGPGIPPEHLSRLFDR 408 (457)
T ss_pred c-----------------------------------------------------CCEEEEEEEeCCCCCCHHHHHHhccc
Confidence 1 12478999999999999999999999
Q ss_pred cccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEE
Q 003018 483 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532 (856)
Q Consensus 483 F~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp 532 (856)
||+.+.+.++..+|+||||+||+++++.|||+|.+++ +++|++|++++|
T Consensus 409 ~~~~~~~~~~~~~g~GlGL~i~~~~~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 409 FYRVDPARSNSGEGTGLGLAIVRSIMEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred cccCCcccCCCCCCccccHHHHHHHHHHCCCEEEEEe-CCCceEEEEecC
Confidence 9999887766778999999999999999999999999 999999999986
No 26
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.97 E-value=1.2e-30 Score=288.22 Aligned_cols=236 Identities=25% Similarity=0.402 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003018 244 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT---ELDVTQQDYVRTAQASGKALVSLINEVLDQAK 320 (856)
Q Consensus 244 ~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~---~l~~~q~~~l~~i~~~~~~L~~lIndlLd~sk 320 (856)
.++.+++..+|+++....+|...+||++|.||+.|.+++++|... .++.+.++++..+.+....+.+||++++.+|+
T Consensus 508 eela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~ 587 (750)
T COG4251 508 EELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSK 587 (750)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 455667778888888899999999999999999999999999754 57888999999999999999999999999999
Q ss_pred HhcCCceeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Q 003018 321 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 400 (856)
Q Consensus 321 ie~g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v 400 (856)
+..-...+ .+.|+.+++++++........+.++++.+ .+ +| .+.+|+.++.|++.||+.|||||...+.-.|.|
T Consensus 588 l~~~~~~l--~~td~~~vv~~vl~~l~~ri~dtgaei~i--~~-lp-~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I 661 (750)
T COG4251 588 LGLTEAPL--QPTDVQKVVDKVLLELSQRIADTGAEIRI--AP-LP-VVAADATQLGQVFQNLIANAIKFGGPENPDIEI 661 (750)
T ss_pred hccccCCC--CCcchHHHHHHHHHhcccccccccceEEe--cc-cc-eeecCHHHHHHHHHHHHhhheecCCCCCCceEE
Confidence 86655554 47899999999999999999999998876 34 66 588999999999999999999998655323333
Q ss_pred EEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhc
Q 003018 401 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 480 (856)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF 480 (856)
.... ....+.++|.|+|+||+++..++||
T Consensus 662 ~~~r---------------------------------------------------~ed~~t~sV~dng~Gi~~a~~~riF 690 (750)
T COG4251 662 SAER---------------------------------------------------QEDEWTFSVRDNGIGIDPAYFERIF 690 (750)
T ss_pred eeec---------------------------------------------------cCCceEEEecCCCCCcCHHHHHHHH
Confidence 2110 1123679999999999999999999
Q ss_pred CccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCC
Q 003018 481 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS 538 (856)
Q Consensus 481 ~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~ 538 (856)
..|.+.. +...+.|||+||+|||+|++.|+|.|+|+|.+|+|+||.|++|....++
T Consensus 691 ~iFqRl~--s~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~~~e~ 746 (750)
T COG4251 691 VIFQRLH--SRDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVGGEEP 746 (750)
T ss_pred HHHHhcC--chhhhcCCCccHHHHHHHHHHhCceEEEeecCCCceeEEEEeecCCcCc
Confidence 9998864 3457889999999999999999999999999999999999999876543
No 27
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.97 E-value=2.4e-29 Score=291.11 Aligned_cols=231 Identities=23% Similarity=0.386 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003018 245 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 324 (856)
Q Consensus 245 ~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g 324 (856)
.++.+.+++++....+.+|++++||||||||+++.+.++++.....+. ..+..+....++|..++++++++++.+..
T Consensus 228 ~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~~~~~~~~~ 304 (461)
T PRK09470 228 SFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLLVLSRNQQK 304 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555566666677788999999999999999999999886543322 24567888899999999999999998765
Q ss_pred CceeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEee
Q 003018 325 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 404 (856)
Q Consensus 325 ~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~ 404 (856)
. .+....+++..++++++..+...+..+++.+.+...+. +..+.+|+..|.+++.||++||+||++ +.|.|+++..+
T Consensus 305 ~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i~i~~~~~~ 381 (461)
T PRK09470 305 N-HLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH-TKIEVAFSVDK 381 (461)
T ss_pred c-ccccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC-CcEEEEEEEEC
Confidence 3 56777899999999999998888888999888874333 457889999999999999999999996 56666654321
Q ss_pred ccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccc
Q 003018 405 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484 (856)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~ 484 (856)
..+.|+|+|+|+||+++.++++|+|||
T Consensus 382 -----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~~~ 408 (461)
T PRK09470 382 -----------------------------------------------------DGLTITVDDDGPGVPEEEREQIFRPFY 408 (461)
T ss_pred -----------------------------------------------------CEEEEEEEECCCCCCHHHHHHhcCCCc
Confidence 146799999999999999999999999
Q ss_pred cCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 003018 485 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 485 q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 534 (856)
+.+...++..+|+||||+||+++++.|||++.+.|.++.||+|++++|+.
T Consensus 409 ~~~~~~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~ 458 (461)
T PRK09470 409 RVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPLY 458 (461)
T ss_pred cCCcccCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEeeCC
Confidence 98877777778999999999999999999999999999999999999974
No 28
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.97 E-value=3.5e-30 Score=263.64 Aligned_cols=223 Identities=22% Similarity=0.391 Sum_probs=184.2
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHH
Q 003018 257 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 336 (856)
Q Consensus 257 ~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~ 336 (856)
.++-+.+.++++|||||||.||.|.+++|...-.++..++|.+.|-+.+++|.+|++.+.-++ ..-..+..++|++
T Consensus 129 ~~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~----~~rp~~r~~~NIH 204 (363)
T COG3852 129 QRAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLG----PQRPGDRVPVNIH 204 (363)
T ss_pred HHHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCcccccchHH
Confidence 345567899999999999999999999998877777789999999999999999999886554 3334556689999
Q ss_pred HHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCC---C--CeEEEEEEEeeccccchh
Q 003018 337 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE---K--GHIFVTVYLVEEVVDSIE 411 (856)
Q Consensus 337 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~---~--G~I~v~v~~~~~~~~~~~ 411 (856)
.+++.|..+.+..+ ..+|.|.-++++.+|. +.+|+.+|.|++.||+.||+..-. . |.|.++-+..-.. .
T Consensus 205 ~VLerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~----~ 278 (363)
T COG3852 205 EVLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQL----T 278 (363)
T ss_pred HHHHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEE----E
Confidence 99999999887665 4579999999999995 789999999999999999999864 3 7777764321110 0
Q ss_pred hhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCC
Q 003018 412 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 491 (856)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~ 491 (856)
. ....+...+.+.|.|+|+|||++.++++|.||...
T Consensus 279 -----------i----------------------------~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~----- 314 (363)
T COG3852 279 -----------I----------------------------AGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSG----- 314 (363)
T ss_pred -----------c----------------------------cCceeEeeeeeEEecCCCCCChHHhhhcccccccc-----
Confidence 0 01112234678999999999999999999999853
Q ss_pred CCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 492 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 492 ~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
+.+||||||+|+++|+..|||.|.|+|.|| .|+|++.+|..+
T Consensus 315 -r~~GsGLGLala~~li~qH~G~Ie~~S~Pg-~T~FrvllP~~~ 356 (363)
T COG3852 315 -REGGTGLGLALAQNLIDQHGGKIEFDSWPG-RTVFRVLLPIRK 356 (363)
T ss_pred -CCCCccccHHHHHHHHHhcCCEEEEeccCC-ceEEEEEeeccc
Confidence 457999999999999999999999999998 599999999855
No 29
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.97 E-value=6.5e-29 Score=285.63 Aligned_cols=222 Identities=21% Similarity=0.314 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003018 244 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 323 (856)
Q Consensus 244 ~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~ 323 (856)
+.++++.++.++..+.+..|++++||||||||+.|.+.++++.+. .....+.+....++|..++++++++++.+.
T Consensus 213 ~~~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l~~~r~~~ 287 (435)
T PRK09467 213 RAFNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFIDYLRTGQ 287 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 445566667777788899999999999999999999998877532 233456778888999999999999998765
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEe
Q 003018 324 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 403 (856)
Q Consensus 324 g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~ 403 (856)
+ ....++++.+++++++..+. ..+..+.+.+++. +..+.+|+..|++|+.||++||+||+ .|.|.|++...
T Consensus 288 ~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i~i~~~~~ 358 (435)
T PRK09467 288 E---MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWIKVSSGTE 358 (435)
T ss_pred C---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeEEEEEEec
Confidence 3 34567899999999887654 3445555555543 34788999999999999999999998 57777765421
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCcc
Q 003018 404 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483 (856)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 483 (856)
...+.|+|+|+|+||+++.++++|+||
T Consensus 359 -----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~~~~~f 385 (435)
T PRK09467 359 -----------------------------------------------------GKRAWFQVEDDGPGIPPEQLKHLFQPF 385 (435)
T ss_pred -----------------------------------------------------CCEEEEEEEecCCCcCHHHHHHhcCCc
Confidence 124689999999999999999999999
Q ss_pred ccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 003018 484 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 484 ~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 534 (856)
++.+.+ +..+|+||||+||+++++.|||+|.+.|.+++|++|++++|+.
T Consensus 386 ~~~~~~--~~~~g~GlGL~iv~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 386 TRGDSA--RGSSGTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred ccCCCC--CCCCCeehhHHHHHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 998754 3347999999999999999999999999999999999999874
No 30
>PRK10337 sensor protein QseC; Provisional
Probab=99.97 E-value=8.1e-29 Score=286.07 Aligned_cols=225 Identities=20% Similarity=0.315 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003018 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV-TQQDYVRTAQASGKALVSLINEVLDQAKVESG 324 (856)
Q Consensus 246 ~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~-~q~~~l~~i~~~~~~L~~lIndlLd~skie~g 324 (856)
++.+..+.+.......+|++.+|||||||++.+.+.++.+.....++ ...++++.+...++++..++++++.+++++.+
T Consensus 223 ~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~~ 302 (449)
T PRK10337 223 LNQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDSL 302 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444555555556678999999999999999999998876544333 34578899999999999999999999999988
Q ss_pred CceeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEEe
Q 003018 325 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLV 403 (856)
Q Consensus 325 ~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~~ 403 (856)
.......++++.+++++++..+...+..+++.+.+.+++. +..+.+|+..+.+++.||++||+||++.| .|.+.+..
T Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~~- 380 (449)
T PRK10337 303 DNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAH-PVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLNA- 380 (449)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCC-CceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEe-
Confidence 7666777899999999999999989999999999887643 34568999999999999999999999764 55554321
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCcc
Q 003018 404 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483 (856)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 483 (856)
..|+|+|+|+|||++.++++|+||
T Consensus 381 --------------------------------------------------------~~i~i~D~G~Gi~~~~~~~if~~f 404 (449)
T PRK10337 381 --------------------------------------------------------RNFTVRDNGPGVTPEALARIGERF 404 (449)
T ss_pred --------------------------------------------------------eEEEEEECCCCCCHHHHHHhcccc
Confidence 148999999999999999999999
Q ss_pred ccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEE
Q 003018 484 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 531 (856)
Q Consensus 484 ~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~l 531 (856)
++.+. +..+|+||||+||++++++|||+|+++|.++.|++|++++
T Consensus 405 ~~~~~---~~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 405 YRPPG---QEATGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred cCCCC---CCCCccchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEeC
Confidence 98643 2446999999999999999999999999999999999863
No 31
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.97 E-value=6.8e-28 Score=267.91 Aligned_cols=211 Identities=23% Similarity=0.412 Sum_probs=182.2
Q ss_pred HHHHHHhHhhhhhHHHHHHHHHH---HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 003018 261 SQFLATVSHEIRTPMNGVLGMLD---MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337 (856)
Q Consensus 261 s~fla~iSHElRTPL~~I~g~~~---lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~ 337 (856)
.++.+.+||||+.||++|.++++ +|.+....++-.+.++.|..-.++|-.+..+|-.|++--... ..++.+.+
T Consensus 385 GQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l~~ 460 (603)
T COG4191 385 GQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSLRE 460 (603)
T ss_pred HHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccHHH
Confidence 57999999999999999999886 466677777888899999999999999999999998854443 46789999
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCC---CCeEEEEEEEeeccccchhhhh
Q 003018 338 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE---KGHIFVTVYLVEEVVDSIEVET 414 (856)
Q Consensus 338 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~---~G~I~v~v~~~~~~~~~~~~~~ 414 (856)
.|++++.++....+..+..+....++. |.+|.+|+.||+|||.|||+||+..+. ++.|.|.+...
T Consensus 461 ai~~Al~ll~~R~~~~~~~l~~~~~~~-~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~----------- 528 (603)
T COG4191 461 AIEGALELLRGRLRAAGVELELDLPDA-PLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQRE----------- 528 (603)
T ss_pred HHHHHHHHHHHhhhccCceeeccCCCC-CceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEec-----------
Confidence 999999999999999999998876553 568999999999999999999999974 45666554321
Q ss_pred hhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCC
Q 003018 415 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 494 (856)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~ 494 (856)
...+.|+|.|||+||+++.+.++|+||++.+. ..
T Consensus 529 ------------------------------------------~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~----~~ 562 (603)
T COG4191 529 ------------------------------------------GGQVVLTVRDNGPGIAPEALPHLFEPFFTTKP----VG 562 (603)
T ss_pred ------------------------------------------CCeEEEEEccCCCCCCHHHHHhhcCCccccCc----cc
Confidence 22478999999999999999999999997542 35
Q ss_pred CcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 003018 495 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533 (856)
Q Consensus 495 ~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 533 (856)
.|.||||+||+.|++-|||+|.+.+.++.|+.|++.++.
T Consensus 563 ~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~~ 601 (603)
T COG4191 563 KGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRR 601 (603)
T ss_pred CCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEeec
Confidence 799999999999999999999999999999999999863
No 32
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.97 E-value=3.5e-29 Score=275.79 Aligned_cols=218 Identities=32% Similarity=0.433 Sum_probs=190.7
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHH
Q 003018 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 336 (856)
Q Consensus 259 aks~fla~iSHElRTPL~~I~g~~~lL~~~--~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~ 336 (856)
.+.+|++.++|||||||++|.++++++... ..++...++++.+..++++|..++++++++++++.+.......++++.
T Consensus 113 ~~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~ 192 (333)
T TIGR02966 113 MRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMP 192 (333)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHH
Confidence 355799999999999999999999988654 344566788999999999999999999999999998888888999999
Q ss_pred HHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEeeccccchhhhhh
Q 003018 337 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETE 415 (856)
Q Consensus 337 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~ 415 (856)
+++..++..+......+++.+.+.++. +..+.+|+..|.+|+.||++||+||++. +.|.|++...+
T Consensus 193 ~~i~~~~~~~~~~~~~~~i~i~~~~~~--~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~~----------- 259 (333)
T TIGR02966 193 ALLDHLRDEAEALSQGKNHQITFEIDG--GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDG----------- 259 (333)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEcCCC--CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEcC-----------
Confidence 999999999999999999999988732 4468899999999999999999999864 55655543211
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCC
Q 003018 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 495 (856)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~ 495 (856)
..+.|.|.|+|+|||++.++++|+||++.+...+...+
T Consensus 260 ------------------------------------------~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~ 297 (333)
T TIGR02966 260 ------------------------------------------GGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTG 297 (333)
T ss_pred ------------------------------------------CEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCC
Confidence 13679999999999999999999999987766566678
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEE
Q 003018 496 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 531 (856)
Q Consensus 496 GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~l 531 (856)
|+||||+||+.+++.|||+|++.|.+++||+|++++
T Consensus 298 g~glGL~~~~~~~~~~gG~i~~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 298 GTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 333 (333)
T ss_pred CCcccHHHHHHHHHHCCCEEEEEecCCCCeEEEEEC
Confidence 999999999999999999999999999999999974
No 33
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.96 E-value=1.2e-27 Score=277.63 Aligned_cols=218 Identities=25% Similarity=0.396 Sum_probs=191.5
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHH
Q 003018 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 338 (856)
Q Consensus 259 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~l 338 (856)
...+|++.++||+|||++.+.+.++++.+....+...++++.+....+++..++++++.+++++.+.......++++.++
T Consensus 255 ~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (475)
T PRK11100 255 YVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALAAL 334 (475)
T ss_pred HHHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHHHH
Confidence 34578999999999999999999999887555566788999999999999999999999999999888777889999999
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCC-CCeEEEEEEEeeccccchhhhhhhc
Q 003018 339 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETELS 417 (856)
Q Consensus 339 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~~~ 417 (856)
+++++..+...+..+++.+.+.++ +..+.+|...|.+++.||+.||+||+. .|.|.|++...+
T Consensus 335 ~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~~------------- 398 (475)
T PRK11100 335 LEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVDG------------- 398 (475)
T ss_pred HHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcC-------------
Confidence 999999999999999999988765 446889999999999999999999995 467777764211
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcc
Q 003018 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 497 (856)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~Gt 497 (856)
..+.|+|+|+|+|||++.++++|++|++.+.. ....+|+
T Consensus 399 ----------------------------------------~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~~~~~~~ 437 (475)
T PRK11100 399 ----------------------------------------EQVALSVEDQGPGIPDYALPRIFERFYSLPRP-ANGRKST 437 (475)
T ss_pred ----------------------------------------CEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-CCCCCCc
Confidence 24789999999999999999999999976432 2345799
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 003018 498 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533 (856)
Q Consensus 498 GLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 533 (856)
||||+||+++++.|||+|.++|.++.||+|.+++|.
T Consensus 438 GlGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp~ 473 (475)
T PRK11100 438 GLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPR 473 (475)
T ss_pred chhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEeeC
Confidence 999999999999999999999999999999999985
No 34
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.96 E-value=4.7e-28 Score=270.13 Aligned_cols=217 Identities=24% Similarity=0.434 Sum_probs=173.8
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHH
Q 003018 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 338 (856)
Q Consensus 259 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~l 338 (856)
+..+|++.+||||||||++|.|+++++.+...++..+++++.+..+++++..++++++++.+... ...+++..+
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~------~~~~~l~~~ 202 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HVTESIHKV 202 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CccccHHHH
Confidence 45789999999999999999999999887666677789999999999999999999998755322 345799999
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcC--CCCeEEEEEEEeeccccchhhhhhh
Q 003018 339 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT--EKGHIFVTVYLVEEVVDSIEVETEL 416 (856)
Q Consensus 339 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT--~~G~I~v~v~~~~~~~~~~~~~~~~ 416 (856)
++.+...+.... .+++.+.+..++..| .+.+|+.+|.||+.||++||+||+ +.|.|.|.+.......
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~--------- 271 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT--------- 271 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc---------
Confidence 999888777554 467888887766655 478999999999999999999997 3456655542110000
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCc
Q 003018 417 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 496 (856)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~G 496 (856)
.........+.|+|.|+|+|||++.++++|+||++. +.+|
T Consensus 272 ----------------------------------~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~------~~~g 311 (348)
T PRK11073 272 ----------------------------------LHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSG------REGG 311 (348)
T ss_pred ----------------------------------cCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccC------CCCC
Confidence 000011123679999999999999999999999863 2469
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 003018 497 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533 (856)
Q Consensus 497 tGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 533 (856)
+||||+|||++++.|||+|+++|.+|+ |+|++++|+
T Consensus 312 ~GlGL~i~~~iv~~~gG~i~~~s~~~~-~~f~i~lP~ 347 (348)
T PRK11073 312 TGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347 (348)
T ss_pred ccCCHHHHHHHHHHcCCeEEEEecCCc-eEEEEEEec
Confidence 999999999999999999999999885 999999986
No 35
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.95 E-value=2.8e-26 Score=250.52 Aligned_cols=217 Identities=39% Similarity=0.666 Sum_probs=184.5
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ceeEeEeecHHH
Q 003018 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK-LELEAVSFNLRA 337 (856)
Q Consensus 259 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~-~~l~~~~~~L~~ 337 (856)
.+..|++.++||+|||++.+.+.++++.....+ .+.+++..+...++++..++++++++++.+.+. .......+++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEGLLD-PQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 478999999999999999999998866554222 267888888899999999999999999998873 344466778999
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhhhhc
Q 003018 338 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417 (856)
Q Consensus 338 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~ 417 (856)
+++++...+...+..+++.+....+ .+..+.+|+.++.||+.||++||+||++.|.|.|.+....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~------------- 257 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDD------------- 257 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecC-------------
Confidence 9999999999988888888886554 3446889999999999999999999998777777764211
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcc
Q 003018 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 497 (856)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~Gt 497 (856)
..+.++|.|+|+||+++.++++|+||++.+...+ |+
T Consensus 258 ----------------------------------------~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~----g~ 293 (336)
T COG0642 258 ----------------------------------------EQVTISVEDTGPGIPEEELERIFEPFFRTDKSRS----GT 293 (336)
T ss_pred ----------------------------------------CeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC----CC
Confidence 0578999999999999999999999998765432 99
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 498 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 498 GLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
||||+|||++++.|||.|.++|.++.||+|++++|...
T Consensus 294 GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 294 GLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred CccHHHHHHHHHHcCCEEEEEecCCCceEEEEEEeccc
Confidence 99999999999999999999999999999999999754
No 36
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.95 E-value=1.7e-26 Score=275.41 Aligned_cols=214 Identities=26% Similarity=0.498 Sum_probs=185.1
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHH
Q 003018 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 338 (856)
Q Consensus 259 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~l 338 (856)
+..+|++.++|||||||+.|.|+++++.....+....++++.+....++|..++++++++++.+... ..++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRESQ----WQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCc----cceecHHHH
Confidence 4568999999999999999999999987765666778999999999999999999999999875433 467999999
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCC-CCeEEEEEEEeeccccchhhhhhhc
Q 003018 339 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETELS 417 (856)
Q Consensus 339 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~~~ 417 (856)
++++...+......+++.+.+.+++..+ .+.+|+..|.|++.||+.||+||+. .|.|.|++...++
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~------------ 531 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSD------------ 531 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCC------------
Confidence 9999999998878899999988876655 4778999999999999999999975 4677666532110
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcc
Q 003018 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 497 (856)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~Gt 497 (856)
..+.|+|+|+|+|||++.++++|+||++.+ .+|+
T Consensus 532 ----------------------------------------~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~------~~g~ 565 (607)
T PRK11360 532 ----------------------------------------GQVAVSIEDNGCGIDPELLKKIFDPFFTTK------AKGT 565 (607)
T ss_pred ----------------------------------------CEEEEEEEeCCCCCCHHHHhhhcCCceeCC------CCCC
Confidence 127899999999999999999999999643 3589
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 498 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 498 GLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
||||++||+++++|||+|+++|.+|+||+|+|++|+..
T Consensus 566 glGL~~~~~~~~~~~G~i~~~s~~~~Gt~~~i~lp~~~ 603 (607)
T PRK11360 566 GLGLALSQRIINAHGGDIEVESEPGVGTTFTLYLPINP 603 (607)
T ss_pred chhHHHHHHHHHHcCCEEEEEEcCCCceEEEEEecCCC
Confidence 99999999999999999999999999999999999854
No 37
>PRK13560 hypothetical protein; Provisional
Probab=99.94 E-value=7.2e-26 Score=280.18 Aligned_cols=213 Identities=17% Similarity=0.171 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003018 243 YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVE 322 (856)
Q Consensus 243 ~~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie 322 (856)
..+.+++.++++++.++|++|+++|||||||||++|.|+++++.+...++....++..+......+..+++.++..
T Consensus 588 ITerK~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 663 (807)
T PRK13560 588 ISERKHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQS---- 663 (807)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 3444555667777788899999999999999999999999998877667777777766666555555555544321
Q ss_pred cCCceeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCC----CeEEE
Q 003018 323 SGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK----GHIFV 398 (856)
Q Consensus 323 ~g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~----G~I~v 398 (856)
....++++.++++++...+......+...+.+.++...+.....+...+.|||.||++||+||+.. |.|.|
T Consensus 664 -----~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i 738 (807)
T PRK13560 664 -----EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKV 738 (807)
T ss_pred -----ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEE
Confidence 233568999999999998887776666666666655444444456778999999999999999843 45665
Q ss_pred EEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhh
Q 003018 399 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 478 (856)
Q Consensus 399 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~ 478 (856)
.+... +...+.|+|+|||+|||++..
T Consensus 739 ~~~~~----------------------------------------------------~~~~v~i~V~D~G~GI~~~~~-- 764 (807)
T PRK13560 739 EIREQ----------------------------------------------------GDGMVNLCVADDGIGLPAGFD-- 764 (807)
T ss_pred EEEEc----------------------------------------------------CCCEEEEEEEeCCCcCCcccc--
Confidence 54321 012478999999999998731
Q ss_pred hcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 003018 479 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 479 iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 534 (856)
...|+||||+|||+||++|||+|+|+|. +||+|+|++|+.
T Consensus 765 --------------~~~~~gLGLai~~~iv~~~gG~I~v~S~--~Gt~F~i~lP~~ 804 (807)
T PRK13560 765 --------------FRAAETLGLQLVCALVKQLDGEIALDSR--GGARFNIRFPMS 804 (807)
T ss_pred --------------ccccCCccHHHHHHHHHHcCCEEEEEcC--CceEEEEEecCC
Confidence 1247889999999999999999999994 799999999974
No 38
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.94 E-value=7e-25 Score=265.76 Aligned_cols=203 Identities=21% Similarity=0.314 Sum_probs=163.2
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 003018 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV-TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337 (856)
Q Consensus 259 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~-~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~ 337 (856)
+..++.+.++||||||++.+.++++...+...++ .+.++++.+.++.++|..+++++.+. ....+..++++.+
T Consensus 474 ~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~------~~~~~~~~~~l~~ 547 (679)
T TIGR02916 474 AFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSK------GLEEEKLCVDLVD 547 (679)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccccCCccccHHH
Confidence 3467889999999999999998888766544343 45678888999999999888776433 2355667899999
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCC-CCeEEEEEEEeeccccchhhhhhh
Q 003018 338 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETEL 416 (856)
Q Consensus 338 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~~ 416 (856)
+++++.+.+... ...+++ .++++ ..+.+|+.++.||+.||++||+||++ +|.|.|++...+
T Consensus 548 ll~~~~~~~~~~--~~~~~l--~~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~~------------ 609 (679)
T TIGR02916 548 LLRRAIASKRAQ--GPRPEV--SIDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVEREC------------ 609 (679)
T ss_pred HHHHHHHHhhhh--cCCceE--EeCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEcC------------
Confidence 999998876542 233444 34443 46889999999999999999999995 467777764211
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhh-HhhhcCccccCCCCCCCCCC
Q 003018 417 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA-QSRIFTPFMQVGPSISRTHG 495 (856)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~-~~~iF~pF~q~d~s~~~~~~ 495 (856)
..+.|+|+|+|+|||++. ++++|+||++.+ .+
T Consensus 610 -----------------------------------------~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~------~~ 642 (679)
T TIGR02916 610 -----------------------------------------GAARIEIEDSGCGMSPAFIRERLFKPFDTTK------GA 642 (679)
T ss_pred -----------------------------------------CEEEEEEEEcCCCcChHHHHHhcCCCCCCCC------CC
Confidence 247899999999999999 999999998643 27
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEE
Q 003018 496 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532 (856)
Q Consensus 496 GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp 532 (856)
|+||||+|||++++.|||+|+++|.+|+||+|++++|
T Consensus 643 G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 643 GMGIGVYECRQYVEEIGGRIEVESTPGQGTIFTLVLP 679 (679)
T ss_pred CcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEeC
Confidence 9999999999999999999999999999999999986
No 39
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.91 E-value=2.9e-23 Score=245.31 Aligned_cols=194 Identities=21% Similarity=0.315 Sum_probs=137.8
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHH
Q 003018 260 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA-QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 338 (856)
Q Consensus 260 ks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i-~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~l 338 (856)
..++++.+|||+||||++|.|++++... .+..+|+..+ ......+..+++++.+ .+
T Consensus 339 ~~~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~ 395 (542)
T PRK11086 339 YADALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKTANNYQEEIGSLLGKIKS-------------------PV 395 (542)
T ss_pred HHHHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHHHHHHHHHHHHHHHhccC-------------------HH
Confidence 3457788999999999999999987432 2223343322 2222223333322210 11
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEeCCCCCceE-eecHHHHHHHHHHHHHHHhhcCC---CCeEEEEEEEeeccccchhhhh
Q 003018 339 LDDVLSLFSGKSQDKGVELAVYISDRVPETL-IGDPGRFRQIITNLMGNSIKFTE---KGHIFVTVYLVEEVVDSIEVET 414 (856)
Q Consensus 339 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v-~~D~~rl~qIl~NLl~NAiKfT~---~G~I~v~v~~~~~~~~~~~~~~ 414 (856)
+...+......+..+++.+.+..++.+|... ..+...|.||+.||++||+||+. .|.|.|++...
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~----------- 464 (542)
T PRK11086 396 IAGFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYR----------- 464 (542)
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc-----------
Confidence 2222222334567889998887766555322 23446899999999999999963 45666655321
Q ss_pred hhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCC
Q 003018 415 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 494 (856)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~ 494 (856)
...+.|+|+|+|+|||++.++++|+||++. +.
T Consensus 465 ------------------------------------------~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~------~~ 496 (542)
T PRK11086 465 ------------------------------------------NGWLHCEVSDDGPGIAPDEIDAIFDKGYST------KG 496 (542)
T ss_pred ------------------------------------------CCEEEEEEEECCCCCCHHHHHHHHhCCCcc------CC
Confidence 124789999999999999999999999853 24
Q ss_pred CcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 495 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 495 ~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
+|+||||+|||++++.|||+|+++|.+|+||+|+|++|+..
T Consensus 497 ~g~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~~ 537 (542)
T PRK11086 497 SNRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDG 537 (542)
T ss_pred CCCcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCCC
Confidence 69999999999999999999999999999999999999854
No 40
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.91 E-value=4.1e-22 Score=231.90 Aligned_cols=195 Identities=11% Similarity=0.194 Sum_probs=152.6
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecH
Q 003018 257 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 335 (856)
Q Consensus 257 ~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L 335 (856)
++.+.++.+.++||+||||++|.+.++++.+...+ ++.++..+.+.+.+.++.+.++++++..+- ....++++
T Consensus 299 e~~r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~------~~l~~~~L 372 (495)
T PRK11644 299 ESVRRDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRP------RQLDDLTL 372 (495)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCC------cccccCCH
Confidence 34567888999999999999999999988664433 345577888999999999999999865441 12346899
Q ss_pred HHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhhh
Q 003018 336 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415 (856)
Q Consensus 336 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~ 415 (856)
.+.+++++..+.......++++....++ +....+|+..+.|++.|+++||+||++.|.|.|++...+
T Consensus 373 ~~~l~~l~~~l~~~~~~~~v~l~~~~~~--~~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~~----------- 439 (495)
T PRK11644 373 EQAIRSLMREMELEDRGIVSHLDWRIDE--SALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQD----------- 439 (495)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCc--ccCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEcC-----------
Confidence 9999999988875554444444433322 224456788999999999999999999888777664211
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCC
Q 003018 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 495 (856)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~ 495 (856)
..+.++|+|+|+|||++. .
T Consensus 440 ------------------------------------------~~i~l~V~DnG~Gi~~~~-------------------~ 458 (495)
T PRK11644 440 ------------------------------------------ERLMLVIEDDGSGLPPGS-------------------G 458 (495)
T ss_pred ------------------------------------------CEEEEEEEECCCCCCcCC-------------------C
Confidence 247899999999998651 3
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 003018 496 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533 (856)
Q Consensus 496 GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 533 (856)
|+|+||+|||++++.|||+|+++| ++||+|++++|.
T Consensus 459 ~~GLGL~ivr~iv~~~GG~i~v~S--~~Gt~f~I~LP~ 494 (495)
T PRK11644 459 QQGFGLRGMRERVTALGGTLTISC--THGTRLSVSLPQ 494 (495)
T ss_pred CCCCcHHHHHHHHHHcCCEEEEEc--CCCEEEEEEEeC
Confidence 679999999999999999999999 889999999984
No 41
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.90 E-value=3.6e-22 Score=236.58 Aligned_cols=196 Identities=20% Similarity=0.273 Sum_probs=144.7
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHHHHH
Q 003018 262 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 341 (856)
Q Consensus 262 ~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~ll~~ 341 (856)
+.+..++||+++||++|.|++++-. ..+.++.+...+..+..+++++....+ ...+...
T Consensus 340 e~l~~~~he~~n~L~~i~g~l~~~~-------~~~~~~~i~~~s~~~~~l~~~l~~~~~--------------~~~~~~~ 398 (545)
T PRK15053 340 ESLRTLRHEHLNWMSTLNGLLQMKE-------YDRVLEMVQGESQAQQQLIDSLREAFA--------------DRQVAGL 398 (545)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhch-------hhHHHHHHHHHHHHHHHHHHHHHHhcc--------------cHHHHHH
Confidence 4567799999999999999887521 234566777777778887777765422 1122222
Q ss_pred HHHHHHHHhhhcCcEEEEEeCCCCC-ceEeecHHHHHHHHHHHHHHHhhcC---CCC--eEEEEEEEeeccccchhhhhh
Q 003018 342 VLSLFSGKSQDKGVELAVYISDRVP-ETLIGDPGRFRQIITNLMGNSIKFT---EKG--HIFVTVYLVEEVVDSIEVETE 415 (856)
Q Consensus 342 v~~~~~~~a~~k~i~l~~~~~~~~p-~~v~~D~~rl~qIl~NLl~NAiKfT---~~G--~I~v~v~~~~~~~~~~~~~~~ 415 (856)
+.. ....+.++++.+.+..+..+. .....|+..|.||+.||++||+||. +.| .|.|.+..
T Consensus 399 l~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------------- 464 (545)
T PRK15053 399 LFG-KVQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------------- 464 (545)
T ss_pred HHH-HHHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE-------------
Confidence 222 234567788888775443321 1235699999999999999999994 334 44444321
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCC
Q 003018 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 495 (856)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~ 495 (856)
+...+.|.|+|+|+|||++.+++||+|||+.+ ++..+
T Consensus 465 ----------------------------------------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk---~~~~~ 501 (545)
T PRK15053 465 ----------------------------------------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTR---ADEPG 501 (545)
T ss_pred ----------------------------------------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCC---CCCCC
Confidence 11247899999999999999999999999743 33457
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 496 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 496 GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
|+||||+|||++++.|||+|+++|.+|.||+|++++|...
T Consensus 502 g~GlGL~ivk~iv~~~~G~i~v~s~~~~Gt~f~i~lP~~~ 541 (545)
T PRK15053 502 EHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIPKVK 541 (545)
T ss_pred CceeCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEECCCC
Confidence 8999999999999999999999999999999999999743
No 42
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.89 E-value=2.4e-22 Score=222.50 Aligned_cols=211 Identities=23% Similarity=0.338 Sum_probs=166.7
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCC---CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEe
Q 003018 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDT---ELDV---TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVS 332 (856)
Q Consensus 259 aks~fla~iSHElRTPL~~I~g~~~lL~~~---~l~~---~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~ 332 (856)
|..+-..-++|||||||+-|...++-|... ..++ .-.++.++|.+....+.+||++.-.|+|+-.-+ .++
T Consensus 485 AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~p~----~e~ 560 (712)
T COG5000 485 AWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPAPK----LEK 560 (712)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----CCc
Confidence 444555569999999999999999987532 2332 235678999999999999999999999975543 457
Q ss_pred ecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCC-----e-EEEEEEEeecc
Q 003018 333 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-----H-IFVTVYLVEEV 406 (856)
Q Consensus 333 ~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-----~-I~v~v~~~~~~ 406 (856)
.||++++.+++.++.. ....+.+..++... |....+|+..|.|++.||+.||..+-+.- . -.++++..
T Consensus 561 ~dL~~ll~e~~~L~e~--~~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~--- 634 (712)
T COG5000 561 SDLRALLKEVSFLYEI--GNDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLD--- 634 (712)
T ss_pred chHHHHHHHHHHHHhc--cCCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEe---
Confidence 8999999999987764 34578888887766 77888899999999999999999985321 0 01122111
Q ss_pred ccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccC
Q 003018 407 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 486 (856)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~ 486 (856)
.....+++.|.|||.|.|.+.+.++||||++.
T Consensus 635 ------------------------------------------------~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTt 666 (712)
T COG5000 635 ------------------------------------------------DADGRIVVDVIDNGKGFPRENRHRALEPYVTT 666 (712)
T ss_pred ------------------------------------------------cCCCeEEEEEecCCCCCChHHhhhhccCceec
Confidence 11235889999999999999999999999864
Q ss_pred CCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeC-CCceEEEEEEEe
Q 003018 487 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP-NIGSTFTFTAVF 533 (856)
Q Consensus 487 d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~-g~GstF~~~lp~ 533 (856)
+.+||||||+|+|+|+|-|||.|.+...| -.|....+.+|.
T Consensus 667 ------r~KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 667 ------REKGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred ------ccccccccHHHHHHHHHhcCCeEEecCCCCCCCcEEEEEccc
Confidence 34799999999999999999999999884 359999988876
No 43
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.86 E-value=3.6e-20 Score=197.94 Aligned_cols=210 Identities=20% Similarity=0.336 Sum_probs=173.2
Q ss_pred HHHHHHhHhhhhhHHHHHHHHHHH---HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 003018 261 SQFLATVSHEIRTPMNGVLGMLDM---LMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337 (856)
Q Consensus 261 s~fla~iSHElRTPL~~I~g~~~l---L~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~ 337 (856)
.+-+.++||||..|||++..++=. ..+...+.....++..|..-.+++-.+|+.+-.|+|-.+++-.+ .|++|++
T Consensus 452 GqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l--qpV~L~~ 529 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL--QPVRLNS 529 (673)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccHHH
Confidence 356789999999999999887632 33444556668999999999999999999999999988887655 4689999
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCC--CeEEEEEEEeeccccchhhhhh
Q 003018 338 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK--GHIFVTVYLVEEVVDSIEVETE 415 (856)
Q Consensus 338 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~--G~I~v~v~~~~~~~~~~~~~~~ 415 (856)
+++.+.+++..+.+.+.+.+..-. +. .+|.||..+++||+.||+-||+.++.. ..|.+.+.
T Consensus 530 ~v~~AweLl~~khk~rQ~~Li~pt--D~-~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~-------------- 592 (673)
T COG4192 530 VVEQAWELLQTKHKRRQIKLINPT--DD-LMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIAL-------------- 592 (673)
T ss_pred HHHHHHHHHHhhhhhccccccCCc--cc-ceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEee--------------
Confidence 999999999999988888886533 22 379999999999999999999998743 23333321
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCC
Q 003018 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 495 (856)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~ 495 (856)
..+...+++.|.|+|.|-|-+..+++|.||... +.-
T Consensus 593 --------------------------------------~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFtts------K~v 628 (673)
T COG4192 593 --------------------------------------GTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTS------KEV 628 (673)
T ss_pred --------------------------------------cCcccceEEEEecCCCCCchhHHHHhcCCcccc------ccc
Confidence 111234789999999999999999999999643 446
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 003018 496 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533 (856)
Q Consensus 496 GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 533 (856)
|.|||||||..|++.|.|.+.+-|...+|.++.+.+..
T Consensus 629 gLGlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f~v 666 (673)
T COG4192 629 GLGLGLSISQSLMEQMQGRLALASTLTKNAMVILEFQV 666 (673)
T ss_pred ccccchhHHHHHHHHhcCcchHhhhcccCcEEEEEEee
Confidence 99999999999999999999999999999998877643
No 44
>PF03924 CHASE: CHASE domain; InterPro: IPR006189 The CHASE domain is an extracellular domain of 200-230 amino acids, which is found in transmembrane receptors from bacteria, lower eukaryotes and plants. It has been named CHASE (Cyclases/Histidine kinases Associated Sensory Extracellular) because of its presence in diverse receptor-like proteins with histidine kinase and nucleotide cyclase domains. The CHASE domain always occurs N-terminally in extracellular or periplasmic locations, followed by an intracellular tail housing diverse enzymatic signalling domains such as histidine kinase (IPR005467 from INTERPRO), adenyl cyclase, GGDEF-type nucleotide cyclase and EAL-type phosphodiesterase domains, as well as non-enzymatic domains such PAS (IPR000014 from INTERPRO), GAF (IPR003018 from INTERPRO), phosphohistidine and response regulatory domains. The CHASE domain is predicted to bind diverse low molecular weight ligands, such as the cytokinin-like adenine derivatives or peptides, and mediate signal transduction through the respective receptors [, ]. The CHASE domain has a predicted alpha+beta fold, with two extended alpha helices on both boundaries and two central alpha helices separated by beta sheets. The termini are less conserved compared with the central part of the domain, which shows strongly conserved motifs.; PDB: 3T4L_B 3T4K_B 3T4S_B 3T4Q_A 3T4J_B 3T4T_B 3T4O_A.
Probab=99.85 E-value=3.5e-21 Score=196.67 Aligned_cols=162 Identities=30% Similarity=0.450 Sum_probs=120.0
Q ss_pred ccceeeeeecccchhHHHHHHhCceeee-ecccccCCCCCCCCCCCCCccceeEe--ecCCcceEEEeccCCChhchHHH
Q 003018 2 ARTRLLLIRVLRSEREEFEKQQGWTIKR-MDTFEHNPVHKDEPSPIEEEYAPVIF--AQDTVSHVISLDMLSGKEDRENV 78 (856)
Q Consensus 2 ~~~~~~~~~v~~~~r~~fe~~~~~~i~~-~~~~~~~~~~~~~p~~~~~~y~pv~~--~~~~~~~~~g~d~~s~~~~~~~~ 78 (856)
+++++|+.||.+++|++||++....+.. +. ++|.+.+++|+||.| |...|..++|+|++|+|.||++|
T Consensus 26 i~~l~w~~~V~~~~r~~fe~~~~~~~~~~f~---------i~~~~~~~~~~pv~yi~P~~~n~~~lG~Dl~s~p~~~~al 96 (193)
T PF03924_consen 26 IQALAWAPRVPPEEREAFEAQLRAEGFPDFR---------IRPDGPRDEYFPVTYIEPLEGNEAALGLDLASDPERREAL 96 (193)
T ss_dssp EEEEEEEE-EEGGGHHHHHHHHT------S-----------BTTS--SEE-BEEEE-GGG--GGGBTBBGGGSHHHHHHH
T ss_pred heEEEEeccCCHHHHHHHHHHHhhhcccceE---------eeeCCCCCCceEEEEeecchhHHhccCcCcCCCHHHHHHH
Confidence 4678999999999999999986655322 23 225568999999977 55678999999999999999999
Q ss_pred HHHHhcCCceeeccccccccC--cceEEEEEeeecCCCCCCCChHHHHHhhcceeeeecchHHHHHHHHHHhhccCcEEE
Q 003018 79 LRARASGKGVLTAPFRLLKTN--RLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFV 156 (856)
Q Consensus 79 ~~a~~tg~~~~t~p~~l~~~~--~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~ 156 (856)
.+|++||+.++|+|++|++.+ +.|++++.|||..+.+...++++|...++||+.++|++++|++.++........+.+
T Consensus 97 ~~A~~tg~~~~s~p~~L~~~~~~~~g~l~~~PVy~~~~~~~~~~~~r~~~~~G~v~~v~~~~~l~~~~~~~~~~~~~~~~ 176 (193)
T PF03924_consen 97 ERARDTGEPVASGPIRLVQGGDQQPGFLLFAPVYDRDGPPPSTPADRRRAFWGFVSAVFRVDDLFESALSELSSEDGLDL 176 (193)
T ss_dssp HHHHHHSS-EE--SEE-TTT----EEEEEEEEEE-TT--SS--HHHHHHTEEEEEEEEEEHHHHHHHHHHTSTTGGGEEE
T ss_pred HHHHHhCCeEEeccEEccCCCCcCcEEEEEeeeecCCCCCCCChhHhhhceeEEEEEEEEHHHHHHHHhhhccccCcEEE
Confidence 999999999999999999865 699999999997666667789999999999999999999999999877654468899
Q ss_pred EeeccCCCCCceeccc
Q 003018 157 NVYDITNLSHPISMYG 172 (856)
Q Consensus 157 ~~~d~~~~~~~~~~y~ 172 (856)
.+||.+....+..+|+
T Consensus 177 ~l~D~~~~~~~~~ly~ 192 (193)
T PF03924_consen 177 RLYDGDSGSDPELLYQ 192 (193)
T ss_dssp EEEE-SSTTS-EEEES
T ss_pred EEEECCCCCCCCcccC
Confidence 9999877777777775
No 45
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.85 E-value=1.7e-20 Score=195.39 Aligned_cols=118 Identities=25% Similarity=0.391 Sum_probs=110.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+||||||++.....+...|.+.||.|.++.+|.+|++.+. .. ||+|++|++||+|||+++|++||+.
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~-~dlviLD~~lP~~dG~~~~~~iR~~----------- 68 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAR-EQ-PDLVLLDLMLPDLDGLELCRRLRAK----------- 68 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cC-CCEEEEECCCCCCCHHHHHHHHHhh-----------
Confidence 7999999999999999999999999999999999999985 45 9999999999999999999999963
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
....+|||++||.....++..++++|||||++|||++.+|...|+..+...
T Consensus 69 ----------~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 69 ----------KGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred ----------cCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 134689999999999999999999999999999999999999999887754
No 46
>PRK13559 hypothetical protein; Provisional
Probab=99.83 E-value=1.2e-19 Score=203.59 Aligned_cols=187 Identities=13% Similarity=0.157 Sum_probs=142.0
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 003018 258 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337 (856)
Q Consensus 258 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~ 337 (856)
+.+.+|++.++||+||||+.|.|+++++... ....++++.+...+.+|..+++++|+.++ ..++++.+
T Consensus 168 ~~~~~l~~~l~H~~~n~L~~i~~~~~l~~~~---~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~ 235 (361)
T PRK13559 168 AHERRLAREVDHRSKNVFAVVDSIVRLTGRA---DDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEE 235 (361)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHH
Confidence 3456799999999999999999999988622 23456788888999999999999987643 35689999
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeec-HHHHHHHHHHHHHHHhhc---C-CCCeEEEEEEEeeccccchhh
Q 003018 338 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD-PGRFRQIITNLMGNSIKF---T-EKGHIFVTVYLVEEVVDSIEV 412 (856)
Q Consensus 338 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D-~~rl~qIl~NLl~NAiKf---T-~~G~I~v~v~~~~~~~~~~~~ 412 (856)
+++.++..+... +..+.+..+ .+ .+..+ ...|.|||.||++||+|| + +.|.|.|.+....
T Consensus 236 ~~~~~~~~~~~~----~~~i~~~~~-~~--~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~-------- 300 (361)
T PRK13559 236 LIRAQVAPYAPR----ATRVAFEGP-GI--RLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSP-------- 300 (361)
T ss_pred HHHHHHHhhcCC----CceEEEECC-Ce--eeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecC--------
Confidence 999998877533 344444422 11 22222 357999999999999999 4 3577777652110
Q ss_pred hhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCC
Q 003018 413 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492 (856)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~ 492 (856)
+...+.+.|.|+|.|++++
T Consensus 301 -------------------------------------------~~~~~~i~v~d~G~~~~~~------------------ 319 (361)
T PRK13559 301 -------------------------------------------EGAGFRIDWQEQGGPTPPK------------------ 319 (361)
T ss_pred -------------------------------------------CCCeEEEEEECCCCCCCCC------------------
Confidence 1124789999999997653
Q ss_pred CCCcccchHHHHHHHHHH-cCCEEEEEEeCCCceEEEEEEEeC
Q 003018 493 THGGTGIGLSISKYLVGR-MKGEIGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 493 ~~~GtGLGLsI~k~lv~~-mgG~I~v~S~~g~GstF~~~lp~~ 534 (856)
..|+|+||.||+++++. |||+|++++. +.||+|+|++|..
T Consensus 320 -~~~~g~Gl~i~~~~v~~~~gG~i~~~~~-~~G~~~~l~~P~~ 360 (361)
T PRK13559 320 -LAKRGFGTVIIGAMVESQLNGQLEKTWS-DDGLLARIEIPSR 360 (361)
T ss_pred -CCCCCcHHHHHHHHHHHHcCCeEEEEEc-CCeEEEEEEEeCC
Confidence 24789999999999987 9999999998 5799999999963
No 47
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.83 E-value=3.6e-20 Score=171.49 Aligned_cols=109 Identities=36% Similarity=0.595 Sum_probs=97.6
Q ss_pred ecHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCC
Q 003018 371 GDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 449 (856)
Q Consensus 371 ~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (856)
||+.+|++|+.||+.||+||++. |.|.|.+...+
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~--------------------------------------------- 35 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDD--------------------------------------------- 35 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEET---------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEec---------------------------------------------
Confidence 79999999999999999999966 88888875422
Q ss_pred CCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEE
Q 003018 450 FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 529 (856)
Q Consensus 450 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~ 529 (856)
..+.|+|.|+|.|||++.++++|+||++.+. .....+|+||||++|+.++++|+|++++.|.++.||+|+|
T Consensus 36 --------~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~gt~v~~ 106 (111)
T PF02518_consen 36 --------DHLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIVKQIAERHGGELTIESSEGGGTTVTF 106 (111)
T ss_dssp --------TEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTEEEEEE
T ss_pred --------CeEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHHHHHHHHCCCEEEEEEcCCCcEEEEE
Confidence 2578999999999999999999999999876 2345578999999999999999999999999999999999
Q ss_pred EEEe
Q 003018 530 TAVF 533 (856)
Q Consensus 530 ~lp~ 533 (856)
++|+
T Consensus 107 ~~p~ 110 (111)
T PF02518_consen 107 TLPL 110 (111)
T ss_dssp EEEG
T ss_pred EEEC
Confidence 9986
No 48
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.79 E-value=1.2e-17 Score=198.90 Aligned_cols=193 Identities=20% Similarity=0.202 Sum_probs=140.9
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHH----HhCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecH
Q 003018 262 QFLATVSHEIRTPMNGVLGMLDM----LMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 335 (856)
Q Consensus 262 ~fla~iSHElRTPL~~I~g~~~l----L~~~--~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L 335 (856)
+..+.++||+++|++.++.++.+ +... ...+...+.+..+.....++...+.+++...+ +...++++
T Consensus 362 ~~~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l 434 (565)
T PRK10935 362 EERATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANL 434 (565)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCH
Confidence 44566999999999988877653 3221 12234456667777777777777777775443 33456899
Q ss_pred HHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhhh
Q 003018 336 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 415 (856)
Q Consensus 336 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~ 415 (856)
.+.+.+++..+... .++.+.+......+....+++.++.|++.||+.||+||++.|.|.+.+....
T Consensus 435 ~~~l~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~~----------- 500 (565)
T PRK10935 435 GSALEEMLDQLRNQ---TDAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTNP----------- 500 (565)
T ss_pred HHHHHHHHHHHHHh---hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC-----------
Confidence 99999999988754 3344444332211112234556799999999999999999898877764310
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCC
Q 003018 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 495 (856)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~ 495 (856)
...+.|+|.|+|+|||++. ..
T Consensus 501 -----------------------------------------~~~~~i~V~D~G~Gi~~~~------------------~~ 521 (565)
T PRK10935 501 -----------------------------------------DGEHTVSIRDDGIGIGELK------------------EP 521 (565)
T ss_pred -----------------------------------------CCEEEEEEEECCcCcCCCC------------------CC
Confidence 1247899999999999631 24
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 003018 496 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 496 GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 534 (856)
|+||||+||+++++.|||+|+++|.+|+||+|+|++|..
T Consensus 522 ~~glGL~i~~~iv~~~~G~i~v~s~~~~Gt~~~i~lP~~ 560 (565)
T PRK10935 522 EGHYGLNIMQERAERLGGTLTISQPPGGGTTVSLTFPSQ 560 (565)
T ss_pred CCCcCHHHHHHHHHHcCCEEEEEECCCCcEEEEEEECCC
Confidence 789999999999999999999999999999999999875
No 49
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.76 E-value=5.3e-17 Score=180.63 Aligned_cols=194 Identities=26% Similarity=0.382 Sum_probs=141.1
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHHHHH
Q 003018 262 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 341 (856)
Q Consensus 262 ~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~ll~~ 341 (856)
+-|...+||..|=|+.|.|++++=. -++..+|+..+...-+ ..++.+.. ++. ...+..
T Consensus 335 ~aLRaq~HEfmNkLhtI~GLlql~~----yd~a~~~I~~~~~~qq---~~~~~l~~--~i~-------------~~~lAg 392 (537)
T COG3290 335 EALRAQSHEFMNKLHTILGLLQLGE----YDDALDYIQQESEEQQ---ELIDSLSE--KIK-------------DPVLAG 392 (537)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHhhhh---hhHHHHHH--hcc-------------cHHHHH
Confidence 4467789999999999999998732 1233455554443322 22222211 111 123344
Q ss_pred HHHHHHHHhhhcCcEEEEEeCCCCCce-EeecHHHHHHHHHHHHHHHhhcCC--C--CeEEEEEEEeeccccchhhhhhh
Q 003018 342 VLSLFSGKSQDKGVELAVYISDRVPET-LIGDPGRFRQIITNLMGNSIKFTE--K--GHIFVTVYLVEEVVDSIEVETEL 416 (856)
Q Consensus 342 v~~~~~~~a~~k~i~l~~~~~~~~p~~-v~~D~~rl~qIl~NLl~NAiKfT~--~--G~I~v~v~~~~~~~~~~~~~~~~ 416 (856)
.+--...+|+++|+.+.++.+..+|.. -.-++.-+--|+-||++||+..+. . ..|.+.+.-
T Consensus 393 ~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~-------------- 458 (537)
T COG3290 393 FLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSD-------------- 458 (537)
T ss_pred HHHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe--------------
Confidence 444445678999999999877766642 234889999999999999999874 2 344444421
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCc
Q 003018 417 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 496 (856)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~G 496 (856)
+...+.|+|.|||+|||++.++++|+.=+..+ ..+|
T Consensus 459 ---------------------------------------~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk-----~~~~ 494 (537)
T COG3290 459 ---------------------------------------RGDELVIEVADTGPGIPPEVRDKIFEKGVSTK-----NTGG 494 (537)
T ss_pred ---------------------------------------cCCEEEEEEeCCCCCCChHHHHHHHhcCcccc-----CCCC
Confidence 22368999999999999999999998766432 2478
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 497 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 497 tGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
.|.||++||++|+.+||.|+++|+.+.||+|++.+|...
T Consensus 495 rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~ 533 (537)
T COG3290 495 RGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVK 533 (537)
T ss_pred CchhHHHHHHHHHHcCceEEEeeCCCCceEEEEECCCCc
Confidence 999999999999999999999999999999999999754
No 50
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.75 E-value=1.1e-16 Score=184.77 Aligned_cols=257 Identities=18% Similarity=0.171 Sum_probs=184.4
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCce
Q 003018 563 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (856)
+++++++++.........+...|+.+..+.+..+++..+.. ..++++++|......+ ....+..++........+
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---g~~l~~~i~~~~~~~~~~ 78 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER--EQPDIILLDVMMPGMD---GFEVCRRLKSDPATTHIP 78 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCCC---HHHHHHHHHcCcccCCCC
Confidence 68999999999998888999999999999999999888754 3467888886654322 233445554432222334
Q ss_pred EEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCC------CCCCC-----CCCcchhhhcCCCCe
Q 003018 643 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG------NIRNW-----ELPSMSLRHLLLGRK 711 (856)
Q Consensus 643 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~------~~~~~-----~~~~~~~~~~~~~~~ 711 (856)
+++++............ ..+...++.||+....+...+.......... ..... ..+...........+
T Consensus 79 ii~~s~~~~~~~~~~~~-~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (457)
T PRK09581 79 VVMVTALDDPEDRVRGL-EAGADDFLTKPINDVALFARVKSLTRLKMVIDELRLRASTNAEIGVTALMIMAYANKDEDGR 157 (457)
T ss_pred EEEEECCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHhhcccccccccCce
Confidence 44444332221111111 1255679999999988887776544211000 00000 000000111234568
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccc
Q 003018 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 791 (856)
Q Consensus 712 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~ 791 (856)
||||||++..+..+...|.. ++.+..+.+|.+|+..+. .+.||+|++|+.||.|||++++++||+..
T Consensus 158 vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~-~~~~d~vi~d~~~p~~~g~~l~~~i~~~~----------- 224 (457)
T PRK09581 158 ILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAA-ETNYDLVIVSANFENYDPLRLCSQLRSKE----------- 224 (457)
T ss_pred EEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcc-cCCCCEEEecCCCCCchHhHHHHHHHhcc-----------
Confidence 99999999999999999965 577888999999999874 57899999999999999999999999742
Q ss_pred cchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhh
Q 003018 792 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847 (856)
Q Consensus 792 ~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 847 (856)
..+++|||++|+..+.+...+|+++|++||+.||++.++|...+...
T Consensus 225 ---------~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~ 271 (457)
T PRK09581 225 ---------RTRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQ 271 (457)
T ss_pred ---------ccCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHH
Confidence 13579999999999999999999999999999999999999888653
No 51
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.74 E-value=6.2e-16 Score=184.28 Aligned_cols=181 Identities=17% Similarity=0.196 Sum_probs=134.1
Q ss_pred hhHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHHHHHHHHHHHHH
Q 003018 272 RTPMNGVLGMLDMLM--DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGK 349 (856)
Q Consensus 272 RTPL~~I~g~~~lL~--~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~ll~~v~~~~~~~ 349 (856)
..+|+.+...+..+. ....++..++.+..+....+.+...+.+++...+.. ..+.++.+.+++++..+...
T Consensus 374 ~~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~~-------~~~~~l~~~l~~~~~~~~~~ 446 (569)
T PRK10600 374 AQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRLQ-------LTEPGLRPALEASCEEFSAR 446 (569)
T ss_pred HHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC-------cccCCHHHHHHHHHHHHHHH
Confidence 334455554444333 223456677889999999999999999999876542 34578899999998888755
Q ss_pred hhhcCcEEEEEeCCCCCceEe-ecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCc
Q 003018 350 SQDKGVELAVYISDRVPETLI-GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 428 (856)
Q Consensus 350 a~~k~i~l~~~~~~~~p~~v~-~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (856)
. ++.+.+.++... ..+. .++..+.||+.|+++||+||++.+.|.|++...
T Consensus 447 ~---~~~i~~~~~~~~-~~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~------------------------- 497 (569)
T PRK10600 447 F---GFPVKLDYQLPP-RLVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQN------------------------- 497 (569)
T ss_pred h---CCeEEEEecCCc-ccCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc-------------------------
Confidence 4 444444443211 1122 245569999999999999999888877766321
Q ss_pred cccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcccchHHHHHHHH
Q 003018 429 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 508 (856)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv 508 (856)
...+.|+|.|+|+|||++. ..|+|+||+||++++
T Consensus 498 ----------------------------~~~~~l~V~D~G~Gi~~~~------------------~~~~glGL~i~~~~~ 531 (569)
T PRK10600 498 ----------------------------QNQVKLSVQDNGCGVPENA------------------ERSNHYGLIIMRDRA 531 (569)
T ss_pred ----------------------------CCEEEEEEEECCCCCCccc------------------cCCCCccHHHHHHHH
Confidence 1247899999999999852 136899999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEEeC
Q 003018 509 GRMKGEIGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 509 ~~mgG~I~v~S~~g~GstF~~~lp~~ 534 (856)
+.|||+|.+.|.+|+||+|++++|..
T Consensus 532 ~~lgG~l~i~s~~~~Gt~v~i~lp~~ 557 (569)
T PRK10600 532 QSLRGDCRVRRRESGGTEVVVTFIPE 557 (569)
T ss_pred HHcCCEEEEEECCCCCEEEEEEEecC
Confidence 99999999999999999999999874
No 52
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.73 E-value=2.2e-17 Score=184.51 Aligned_cols=117 Identities=33% Similarity=0.480 Sum_probs=110.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..|.++...|...||.|..+.|+.+|++.+... .||+|++|+.||+|||++++++|++.
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~-~~~lvl~Di~mp~~~Gl~ll~~i~~~---------- 73 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES-PFDLVLLDIRMPGMDGLELLKEIKSR---------- 73 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC-CCCEEEEecCCCCCchHHHHHHHHhh----------
Confidence 4799999999999999999999999999999999999999654 79999999999999999999999984
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+++|||+||++.+.++..+|++.||.|||.|||+.++|...|.+.+.
T Consensus 74 ------------~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~ 121 (464)
T COG2204 74 ------------DPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALE 121 (464)
T ss_pred ------------CCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999998775
No 53
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.73 E-value=4.4e-17 Score=150.36 Aligned_cols=111 Identities=36% Similarity=0.564 Sum_probs=104.6
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 712 ILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 712 ILvVdDn~~n~~~l~~~L~~~g~-~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
||||||++..+..+...|+..|+ .|..+.++.+|++.+. .+.||+||+|+.||.++|.+++++||+.
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~~d~iiid~~~~~~~~~~~~~~i~~~----------- 68 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLK-KHPPDLIIIDLELPDGDGLELLEQIRQI----------- 68 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHH-HSTESEEEEESSSSSSBHHHHHHHHHHH-----------
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhc-ccCceEEEEEeeeccccccccccccccc-----------
Confidence 79999999999999999999999 9999999999999995 5779999999999999999999999974
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHh
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 845 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 845 (856)
.+++|||++|+..+.....+++++|+++|+.||++.++|.++|+
T Consensus 69 -----------~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 69 -----------NPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp -----------TTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred -----------cccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 25789999999999999999999999999999999999999874
No 54
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.72 E-value=2.3e-17 Score=174.90 Aligned_cols=120 Identities=32% Similarity=0.491 Sum_probs=110.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
..+||+|||.+.++..++..|+..||.|..+++|++|+++.. .+.+|+||+|++||+|||+|++++|+.+.+
T Consensus 14 ~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~-~~~~dlvllD~~mp~mdg~ev~~~lk~~~p------- 85 (360)
T COG3437 14 KLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQ-EEPPDLVLLDVRMPEMDGAEVLNKLKAMSP------- 85 (360)
T ss_pred cceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhc-ccCCceEEeeccCCCccHHHHHHHHHhcCC-------
Confidence 358999999999999999999999999999999999999885 456999999999999999999999998543
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+.++|||++||.++.++..+|+.+|+++||.||+++.+|...++..+
T Consensus 86 ------------~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~ 133 (360)
T COG3437 86 ------------STRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHL 133 (360)
T ss_pred ------------cccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999998886443
No 55
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.72 E-value=1.5e-16 Score=150.89 Aligned_cols=119 Identities=34% Similarity=0.523 Sum_probs=105.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHH-HHHHHhCCCC-CccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGK-KATELLMPPH-QFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~-eA~~~l~~~~-~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 786 (856)
+.+||+|||++.++..+..+|...|+.+..+.+|. +|++.+. .+ .||+|++|++||+|||+++++++|+.
T Consensus 5 ~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~-~~~~~dlii~D~~mp~~~G~~~~~~l~~~------- 76 (130)
T COG0784 5 GLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLR-ELPQPDLILLDINMPGMDGIELLRRLRAR------- 76 (130)
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHH-hCCCCCEEEEeCCCCCCCHHHHHHHHHhC-------
Confidence 46899999999999999999999999999999996 9999985 45 59999999999999999999999973
Q ss_pred ccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHH-HHHHHhhhCCC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ-LYREVSRFFPP 850 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~-L~~~l~~~~~~ 850 (856)
...+|+|++|+........+++++|+++|+.||+...+ |..++.+++..
T Consensus 77 ---------------~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 77 ---------------GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred ---------------CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 23678999999999988888899999999999977666 78888876543
No 56
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.70 E-value=6.5e-17 Score=180.23 Aligned_cols=117 Identities=26% Similarity=0.397 Sum_probs=106.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHh--hcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLK--RYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~--~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 786 (856)
.+||||||.+..|+.++.++. .+|+.|+ +|.||++|+++++ ..+||+|++||.||+|||+++++.||+.
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~-e~~pDiviTDI~MP~mdGLdLI~~ike~------- 73 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQ-ETQPDIVITDINMPGMDGLDLIKAIKEQ------- 73 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHH-hcCCCEEEEecCCCCCcHHHHHHHHHHh-------
Confidence 379999999999999999996 4688755 7999999999995 5789999999999999999999999984
Q ss_pred ccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+.+-+|++|+..+=+...+|+++|+.|||.||++.++|..++.++..
T Consensus 74 ---------------~p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~ 121 (475)
T COG4753 74 ---------------SPDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIG 121 (475)
T ss_pred ---------------CCCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999987653
No 57
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.68 E-value=1.1e-15 Score=169.63 Aligned_cols=123 Identities=26% Similarity=0.395 Sum_probs=113.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 708 ~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
..++||||||+..+++.++.+|...|+.|+.+.+|.+|+..+.+ .+||+||.|+.||+||||++|+++|+.+.
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e-~~~dlil~d~~mp~~dg~el~~~lr~~~~------ 203 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE-LPPDLVLLDANMPDMDGLELCTRLRQLER------ 203 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhc-CCCcEEEEecCCCccCHHHHHHHHhcccc------
Confidence 45799999999999999999999999999999999999999964 58999999999999999999999998542
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
...+|||++|+..+.....++++.|++||++||++..+|...+.+.++..
T Consensus 204 --------------t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~ 253 (435)
T COG3706 204 --------------TRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRK 253 (435)
T ss_pred --------------cccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhh
Confidence 46899999999999999999999999999999999999999988776543
No 58
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.67 E-value=5.3e-16 Score=153.10 Aligned_cols=115 Identities=27% Similarity=0.442 Sum_probs=105.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhhc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~-g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
+||||||++....+-+.+++.. ||.+. .|.++++|..++. ...+||||+|+-||+.||++++..||+.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~-~~~pDLILLDiYmPd~~Gi~lL~~ir~~--------- 71 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIE-EFKPDLILLDIYMPDGNGIELLPELRSQ--------- 71 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHH-hhCCCEEEEeeccCCCccHHHHHHHHhc---------
Confidence 6999999999999999999985 78755 7899999999985 5678999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
+.++-||++||-.+.++..+++.+|+-|||.|||..+.|.+++.+|.
T Consensus 72 -------------~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~ 118 (224)
T COG4565 72 -------------HYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYR 118 (224)
T ss_pred -------------CCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHH
Confidence 44677999999999999999999999999999999999999999885
No 59
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.66 E-value=7.7e-15 Score=173.30 Aligned_cols=146 Identities=18% Similarity=0.276 Sum_probs=111.4
Q ss_pred ecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHH---HHHHHHHHhhcC-------------CCCeE
Q 003018 333 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI---ITNLMGNSIKFT-------------EKGHI 396 (856)
Q Consensus 333 ~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qI---l~NLl~NAiKfT-------------~~G~I 396 (856)
+.+..++...-.+++..+...+.++.+.+... .+..|+..+.++ |.||+.||++|. +.|.|
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~---~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS---STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCC---ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 34566777777777777766665665555443 256799999999 679999999996 23566
Q ss_pred EEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhH
Q 003018 397 FVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 476 (856)
Q Consensus 397 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~ 476 (856)
.+++... ...+.|+|+|+|.||+++.+
T Consensus 420 ~l~a~~~-----------------------------------------------------~~~v~I~V~DdG~GId~e~i 446 (670)
T PRK10547 420 ILSAEHQ-----------------------------------------------------GGNICIEVTDDGAGLNRERI 446 (670)
T ss_pred EEEEEEc-----------------------------------------------------CCEEEEEEEeCCCCCCHHHH
Confidence 6655321 12578999999999998654
Q ss_pred ---------------------hhhcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 477 ---------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 477 ---------------------~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
..||+|||..... .+..+|+|+||+|||++++.|||+|+++|.+|+||+|++++|+..
T Consensus 447 ~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i~LPltl 525 (670)
T PRK10547 447 LAKAASQGLAVSENMSDEEVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRILLPLTL 525 (670)
T ss_pred HHHHHHcCCCccccCCHHHHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEechh
Confidence 4699997765332 234579999999999999999999999999999999999999864
No 60
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.65 E-value=1.5e-15 Score=156.90 Aligned_cols=118 Identities=30% Similarity=0.361 Sum_probs=106.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcC-CEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYG-AAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g-~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
+||||||++..+..++.+|...+ ++|+ .+.||.+|++.+ ....||+|+||+.||+|||+++++.||+.
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~-~~~~pdvvl~Dl~mP~~~G~e~~~~l~~~--------- 71 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLA-RELKPDVVLLDLSMPGMDGLEALKQLRAR--------- 71 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHh-hhcCCCEEEEcCCCCCCChHHHHHHHHHH---------
Confidence 69999999999999999998876 7755 567799999986 46789999999999999999999999963
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
.++++|+++|++...+...+++++|+++|+.|..+.++|.++|+..+...
T Consensus 72 -------------~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 72 -------------GPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred -------------CCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 45789999999999999999999999999999999999999999876543
No 61
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.65 E-value=1.4e-15 Score=147.25 Aligned_cols=117 Identities=21% Similarity=0.369 Sum_probs=108.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.-|-||||+...|+.+..+|...||+|.+..++.+-+... ....+-++++|+.||+|+|.|+-+++++.
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~-~~~~pGclllDvrMPg~sGlelq~~L~~~---------- 73 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA-PLDRPGCLLLDVRMPGMSGLELQDRLAER---------- 73 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhc-cCCCCCeEEEecCCCCCchHHHHHHHHhc----------
Confidence 4699999999999999999999999999999999999985 45678999999999999999999999873
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
....|||++|++.+..-..+++++|+-|||.|||+...|+.+|.+-+.
T Consensus 74 ------------~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~ 121 (202)
T COG4566 74 ------------GIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALA 121 (202)
T ss_pred ------------CCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999988764
No 62
>PLN03029 type-a response regulator protein; Provisional
Probab=99.61 E-value=6.9e-15 Score=153.46 Aligned_cols=119 Identities=26% Similarity=0.410 Sum_probs=104.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCC-------------------CCccEEEEeCCCCCCCH
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-------------------HQFDACFMDIQMPEMDG 769 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~-------------------~~~DlilmDi~MP~mdG 769 (856)
..+||||||++.++..+..+|+..||.|.++.+|.+|++.+... ..||+||+|+.||+|||
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G 87 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTG 87 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCH
Confidence 35899999999999999999999999999999999999987421 24689999999999999
Q ss_pred HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhh
Q 003018 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847 (856)
Q Consensus 770 ~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 847 (856)
+++++.||+.. ...++|||++|+....+...+|+++|+++|+.||++..+|...+..+
T Consensus 88 ~e~l~~ir~~~--------------------~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~ 145 (222)
T PLN03029 88 YDLLKKIKESS--------------------SLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHM 145 (222)
T ss_pred HHHHHHHHhcc--------------------ccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHH
Confidence 99999999732 12468999999999999999999999999999999999997765543
No 63
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.57 E-value=3.8e-14 Score=148.37 Aligned_cols=115 Identities=20% Similarity=0.295 Sum_probs=103.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhc-CCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~-g~~-v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+||||||++..+..+...|... |+. |..+.++.+|++.+. ...||+|++|+.||++||+++++.||+.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~-~~~pdlvllD~~mp~~~gle~~~~l~~~-------- 75 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE-RFKPGLILLDNYLPDGRGINLLHELVQA-------- 75 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCcHHHHHHHHHhc--------
Confidence 58999999999999999999874 784 678999999999985 5679999999999999999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhh
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 847 (856)
.+.+|||++|+....+...+++++|++||+.||++.++|..+|+++
T Consensus 76 --------------~~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~ 121 (225)
T PRK10046 76 --------------HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 (225)
T ss_pred --------------CCCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHH
Confidence 2357899999999999999999999999999999999999999774
No 64
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.56 E-value=6e-14 Score=146.04 Aligned_cols=116 Identities=22% Similarity=0.354 Sum_probs=106.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+||+|||++..+..+...|+..|+.+..+.++.+|+..+. ...||+||+|+.||+++|+++++.||+.
T Consensus 3 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~----------- 70 (225)
T PRK10529 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-TRKPDLIILDLGLPDGDGIEFIRDLRQW----------- 70 (225)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHcC-----------
Confidence 7999999999999999999999999999999999998874 4679999999999999999999999852
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.++|||++|+....+...+++++|+++|+.||++.++|...+.+.+..
T Consensus 71 ------------~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~ 118 (225)
T PRK10529 71 ------------SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 258999999999999999999999999999999999999999877653
No 65
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.56 E-value=5.2e-14 Score=160.73 Aligned_cols=117 Identities=21% Similarity=0.324 Sum_probs=92.4
Q ss_pred EeecHHHHHHHHHHHHHHHhhcCCCC----eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCC
Q 003018 369 LIGDPGRFRQIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 444 (856)
Q Consensus 369 v~~D~~rl~qIl~NLl~NAiKfT~~G----~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (856)
+.++...|.|++.|||+||++|++.+ .|.|.+....
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~---------------------------------------- 69 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVD---------------------------------------- 69 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEcc----------------------------------------
Confidence 34567889999999999999999764 3555443210
Q ss_pred CCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCC--CCCCCcccchHHHHHHHHHHcCCE-EEEEEeC
Q 003018 445 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 521 (856)
Q Consensus 445 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~--~~~~~GtGLGLsI~k~lv~~mgG~-I~v~S~~ 521 (856)
.+...+.|+|+|+|+||+++.++++|++|++.+... ....||+||||++|+.++++|+|. |++.|.+
T Consensus 70 ----------~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~ 139 (535)
T PRK04184 70 ----------EGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISST 139 (535)
T ss_pred ----------CCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEec
Confidence 011246799999999999999999999997654322 234578999999999999999997 9999999
Q ss_pred CCce-EEEEEEEeCC
Q 003018 522 NIGS-TFTFTAVFGN 535 (856)
Q Consensus 522 g~Gs-tF~~~lp~~~ 535 (856)
+.|+ .|+|++++..
T Consensus 140 ~~g~~~~~~~l~id~ 154 (535)
T PRK04184 140 GGSKKAYYFELKIDT 154 (535)
T ss_pred CCCceEEEEEEEecc
Confidence 9998 8999988753
No 66
>PRK11173 two-component response regulator; Provisional
Probab=99.55 E-value=9e-14 Score=146.30 Aligned_cols=117 Identities=23% Similarity=0.366 Sum_probs=106.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||+|||++..+..+...|+..|+.|..+.++.+|+..+. ...||+|++|+.||.++|+++++.||+.
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~---------- 72 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-ENDINLVIMDINLPGKNGLLLARELREQ---------- 72 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-hCCCCEEEEcCCCCCCCHHHHHHHHhcC----------
Confidence 47999999999999999999999999999999999999885 4679999999999999999999999862
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
..+|||++|+.........++++|+++|+.||++.++|...+...+..
T Consensus 73 -------------~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r 120 (237)
T PRK11173 73 -------------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred -------------CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 258999999999999999999999999999999999999888776543
No 67
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.54 E-value=1.3e-13 Score=143.45 Aligned_cols=117 Identities=28% Similarity=0.435 Sum_probs=107.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+||+|||++..+..+...|+..|+.|..+.++.+|+..+. .+.||+|++|+.||.++|++++++||+.
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-~~~~dlvild~~l~~~~g~~l~~~lr~~----------- 69 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLN-EHLPDIAIVDLGLPDEDGLSLIRRWRSN----------- 69 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999885 5679999999999999999999999962
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+++|||++|+....+....++++|++||+.||++..+|...+...+..
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 70 -----------DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred -----------CCCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 2468999999999999999999999999999999999999999877654
No 68
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.53 E-value=1.6e-13 Score=143.17 Aligned_cols=117 Identities=28% Similarity=0.464 Sum_probs=107.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+||||||++..+..+...|+..|+.|..+.++.+|++.+. ...||+|++|+.||.++|+++++.+|+.
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~~~~~~g~~~~~~lr~~----------- 69 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM-TGDYDLIILDIMLPDVNGWDIVRMLRSA----------- 69 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999998874 4679999999999999999999999963
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+.+|||++|+....+...+++++|++||+.||++.++|...+...+..
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 70 -----------NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred -----------CCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 2468999999999999999999999999999999999999999877653
No 69
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.53 E-value=2.2e-13 Score=143.44 Aligned_cols=119 Identities=25% Similarity=0.377 Sum_probs=108.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
..+||||||++..+..+...|...|+.+..+.++.++++.+. .+.||+|++|+.||.++|+++++.||+.
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~--------- 74 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLT-RESFHLMVLDLMLPGEDGLSICRRLRSQ--------- 74 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 358999999999999999999999999999999999999874 4679999999999999999999999962
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+++|||++|+....+....++++|+++|+.||++.++|...+...+..
T Consensus 75 -------------~~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 75 -------------NNPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred -------------CCCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 2368999999999999999999999999999999999999999887654
No 70
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.52 E-value=2e-13 Score=141.36 Aligned_cols=116 Identities=28% Similarity=0.476 Sum_probs=106.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+||+|||++..+..+...|...|+.+.++.++.++++.+. ...||+|++|+.||+++|+++++.||..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~d~illd~~~~~~~g~~~~~~l~~~----------- 69 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLE-SGHYSLVVLDLGLPDEDGLHLLRRWRQK----------- 69 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999874 4679999999999999999999999862
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+++|||++|+....+...+++++|++||+.||++.++|...+.....
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 70 -----------KYTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred -----------CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 246899999999999999999999999999999999999999887664
No 71
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.52 E-value=3.1e-14 Score=145.69 Aligned_cols=115 Identities=31% Similarity=0.513 Sum_probs=101.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+|+||||+......+..+|++.|..+-.++...+|++.+. .+.||+||+|+.||.|+|+|+++++|.+++
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le-~~kpDLifldI~mp~~ngiefaeQvr~i~~--------- 71 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLE-VFKPDLIFLDIVMPYMNGIEFAEQVRDIES--------- 71 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHH-hcCCCEEEEEeecCCccHHHHHHHHHHhhc---------
Confidence 6999999999999999999999999999999999999984 688999999999999999999999998643
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+|||++|+++.-. ..++..-.+||+.||++++.|.++|.|..+.
T Consensus 72 -------------~v~iifIssh~eya--~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 72 -------------AVPIIFISSHAEYA--DDSFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred -------------cCcEEEEecchhhh--hhhcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 68999999986543 3444455589999999999999999988753
No 72
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.52 E-value=1.9e-13 Score=141.85 Aligned_cols=116 Identities=26% Similarity=0.355 Sum_probs=106.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||+|||++..+..+...|...|+.|..+.++.+|++.+. ...||+|++|+.||.++|+++++.||+.
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~---------- 71 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQ-NQHVDLILLDINLPGEDGLMLTRELRSR---------- 71 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhC----------
Confidence 47999999999999999999999999999999999999875 4679999999999999999999999862
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
+++|||++|+........+++++|++||+.||++.++|...+...+.
T Consensus 72 -------------~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~ 118 (221)
T PRK10766 72 -------------STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLW 118 (221)
T ss_pred -------------CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999999999999999999999988876553
No 73
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.52 E-value=1.8e-13 Score=144.65 Aligned_cols=115 Identities=20% Similarity=0.384 Sum_probs=101.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhhc-CCEE-EEEcCHHHHHHHhCC-CCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMP-PHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~-g~~v-~~a~~g~eA~~~l~~-~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
+||||||++..+..+..+|... |+.+ ..+.++.+|++.+.. ...||+||+|+.||+|||+++++.||+.
T Consensus 3 ~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~-------- 74 (239)
T PRK10430 3 NVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEA-------- 74 (239)
T ss_pred eEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhh--------
Confidence 7999999999999999999874 7764 478999999987742 3569999999999999999999999963
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhh
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 847 (856)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|.++
T Consensus 75 --------------~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 75 --------------GCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred --------------CCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 2468999999999999999999999999999999999999998763
No 74
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.51 E-value=2.8e-13 Score=142.74 Aligned_cols=116 Identities=23% Similarity=0.297 Sum_probs=106.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+. .+.||+|++|++||.++|+++++.||+.
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-~~~~dlvild~~l~~~~g~~~~~~ir~~----------- 70 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATIL-REQPDLVLLDIMLPGKDGMTICRDLRPK----------- 70 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 7999999999999999999999999999999999999885 5679999999999999999999999962
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
...|||++|+........+++++|++||+.||++..+|...+...+..
T Consensus 71 ------------~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 71 ------------WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 246999999999988899999999999999999999999999876543
No 75
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.50 E-value=3.3e-13 Score=140.92 Aligned_cols=120 Identities=23% Similarity=0.323 Sum_probs=108.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
++||+|||++..+..+...|+..|+.+..+.++.+|++.+. ...||+|++|+.||.++|+++++.||+..
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l~~~~--------- 72 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWPDLILLDWMLPGGSGIQFIKHLKRES--------- 72 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHhcc---------
Confidence 57999999999999999999999999999999999999885 46799999999999999999999998631
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
..+.+|||++|+........+++++|+++|+.||++.++|...+...+..
T Consensus 73 -----------~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 73 -----------MTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred -----------ccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 12468999999999999999999999999999999999999998877643
No 76
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.50 E-value=2.9e-13 Score=142.99 Aligned_cols=116 Identities=19% Similarity=0.334 Sum_probs=103.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+||+|||++..+..+...|+..|+.|..+.++.++++.+. ...||+|++|+.||.++|+++++.||+.
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~l~~~~g~~l~~~i~~~----------- 70 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLA-SETVDVVVVDLNLGREDGLEIVRSLATK----------- 70 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 7999999999999999999999999999999999999884 4679999999999999999999999852
Q ss_pred ccchhhhccCCCCCCcEEEEecCC-CHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADV-IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~-~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.++|||++|+.. ......+++++|+++|+.||++.++|...+...+..
T Consensus 71 ------------~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~ 119 (241)
T PRK13856 71 ------------SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRV 119 (241)
T ss_pred ------------CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhh
Confidence 258999999854 566778999999999999999999999988776643
No 77
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.50 E-value=3.6e-13 Score=140.61 Aligned_cols=114 Identities=27% Similarity=0.459 Sum_probs=104.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+. ..||+|++|+.||.++|+++++.||+.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~d~vl~d~~~~~~~g~~~~~~l~~~----------- 69 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--DSIDLLLLDVMMPKKNGIDTLKELRQT----------- 69 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh--cCCCEEEEeCCCCCCcHHHHHHHHHhc-----------
Confidence 7999999999999999999999999999999999999874 369999999999999999999999962
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
. .+|||++|+........+++++|+++|+.||++.++|...+...+.
T Consensus 70 -----------~-~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 70 -----------H-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred -----------C-CCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 1 3899999999999899999999999999999999999999987654
No 78
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.50 E-value=4e-13 Score=139.34 Aligned_cols=120 Identities=26% Similarity=0.419 Sum_probs=108.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..+...|+..|+.+..+.++.+++..+. .+.||+|++|+.||.++|+++++.||...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~d~vi~d~~~~~~~g~~~~~~l~~~~--------- 72 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLIN-ERGPDLILLDWMLPGTSGIELCRRLRRRP--------- 72 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHH-hcCCCEEEEECCCCCCcHHHHHHHHHccc---------
Confidence 47999999999999999999999999999999999999885 46799999999999999999999998632
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
..+.+|||++|+........+++++|+++|+.||++.++|..++...+..
T Consensus 73 -----------~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 73 -----------ETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred -----------cCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 12468999999999999999999999999999999999999999877653
No 79
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.49 E-value=6.2e-13 Score=137.99 Aligned_cols=116 Identities=26% Similarity=0.454 Sum_probs=106.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+||+|||++..+..+...|...|+.+.++.++.+|+..+. ...||+|++|+.||.++|+++++.||+.
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~----------- 69 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL-KDDYALIILDIMLPGMDGWQILQTLRTA----------- 69 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHcC-----------
Confidence 6999999999999999999999999999999999999884 4679999999999999999999999862
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
..+|||++|+....+...+++++|+++|+.||++.++|...+...+..
T Consensus 70 ------------~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 70 ------------KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 257999999999999999999999999999999999999999876653
No 80
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.49 E-value=4.8e-13 Score=143.36 Aligned_cols=120 Identities=26% Similarity=0.324 Sum_probs=105.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhc-CCEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~-g~~v-~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+||||||++..+..+...|... ++.+ .++.+|.+|++.+. ...||+|++|+.||.|||++++++||+...
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~-~~~~DlvllD~~mp~~dG~~~l~~i~~~~~------ 75 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIK-EQQPDVVVLDIIMPHLDGIGVLEKLNEIEL------ 75 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhcc------
Confidence 47999999999999999999864 5554 47899999999885 567999999999999999999999997421
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
...+|||++|+........+++++|+++|+.||++.++|...+.++...
T Consensus 76 --------------~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 76 --------------SARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred --------------ccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 2247999999999999999999999999999999999999999887643
No 81
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.49 E-value=5.5e-13 Score=137.80 Aligned_cols=116 Identities=28% Similarity=0.466 Sum_probs=106.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+||||||++..+..+...|+..|+.+..+.++.+++..+. .+.||+|++|+.||.++|+++++.||+.
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~i~~~----------- 69 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY-SAPYDAVILDLTLPGMDGRDILREWREK----------- 69 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999875 4679999999999999999999999963
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+.+|||++|+....+...+++++|+++|+.||++.++|..++...+.
T Consensus 70 -----------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 70 -----------GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred -----------CCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 246899999999999999999999999999999999999998887654
No 82
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.49 E-value=4.9e-13 Score=139.37 Aligned_cols=117 Identities=26% Similarity=0.345 Sum_probs=105.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC--CCHHHHHHHHHhhcccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE--MDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~--mdG~e~~~~IR~~~~~~~~~~ 787 (856)
++||||||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.||. ++|+++++.||..
T Consensus 1 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~~~g~~~~~~i~~~-------- 71 (227)
T TIGR03787 1 KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFR-QRLPDLAIIDIGLGEEIDGGFMLCQDLRSL-------- 71 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHH-hCCCCEEEEECCCCCCCCCHHHHHHHHHhc--------
Confidence 37999999999999999999999999999999999999874 467999999999997 5899999999963
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+++|||++|+....+....++++|+++|+.||++.++|..++...+.
T Consensus 72 --------------~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 72 --------------SATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred --------------CCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 236899999999999999999999999999999999999998877654
No 83
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.48 E-value=7.3e-13 Score=120.43 Aligned_cols=109 Identities=48% Similarity=0.716 Sum_probs=92.6
Q ss_pred ecHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCC
Q 003018 371 GDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 449 (856)
Q Consensus 371 ~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (856)
+|+..|.+++.|++.||+++... +.|.|.+...+
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~--------------------------------------------- 35 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDG--------------------------------------------- 35 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcC---------------------------------------------
Confidence 58899999999999999999976 67776664321
Q ss_pred CCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEE
Q 003018 450 FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 529 (856)
Q Consensus 450 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~ 529 (856)
..+.|.|.|+|.|++++...++|.+++.... .....++.|+||++|+.+++.|+|++.+.+.++.|++|+|
T Consensus 36 --------~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~ 106 (111)
T smart00387 36 --------DHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTI 106 (111)
T ss_pred --------CEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHHHHHHcCCEEEEEecCCCcEEEEE
Confidence 2467999999999999999999999987543 2334567999999999999999999999999899999999
Q ss_pred EEEe
Q 003018 530 TAVF 533 (856)
Q Consensus 530 ~lp~ 533 (856)
.+|+
T Consensus 107 ~~~~ 110 (111)
T smart00387 107 TLPL 110 (111)
T ss_pred EeeC
Confidence 9986
No 84
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.46 E-value=1.1e-12 Score=135.48 Aligned_cols=116 Identities=27% Similarity=0.465 Sum_probs=106.1
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccc
Q 003018 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 791 (856)
Q Consensus 712 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~ 791 (856)
||++||++..+..+...|...|+.+..+.++.+|++.+. .+.||+|++|+.||.++|+++++.||+.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~------------ 67 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLAL-KDDYDLIILDVMLPGMDGWQILQTLRRS------------ 67 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHcc------------
Confidence 589999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred cchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 792 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 792 ~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|...+...+..
T Consensus 68 ----------~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 116 (218)
T TIGR01387 68 ----------GKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRR 116 (218)
T ss_pred ----------CCCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 2468999999999999999999999999999999999999999876643
No 85
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.45 E-value=9.8e-13 Score=122.18 Aligned_cols=115 Identities=24% Similarity=0.346 Sum_probs=107.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
+..|+|||+....+.+...+++.||.|.+|++..+|+..+. ...|...+.|+.|-..+|++.++.||+.
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~ar-t~~PayAvvDlkL~~gsGL~~i~~lr~~---------- 78 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAAR-TAPPAYAVVDLKLGDGSGLAVIEALRER---------- 78 (182)
T ss_pred ceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHh-cCCCceEEEEeeecCCCchHHHHHHHhc----------
Confidence 46999999999999999999999999999999999999985 5689999999999999999999999984
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhh
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 847 (856)
..+..||++|+.++..+..++.+.|+++||.||-+.+++..++.+-
T Consensus 79 ------------~~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 79 ------------RADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred ------------CCcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 3467899999999999999999999999999999999999998765
No 86
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.45 E-value=1.6e-12 Score=135.10 Aligned_cols=118 Identities=25% Similarity=0.400 Sum_probs=106.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..+...|...|+.+..+.++.+++..+. ...||+|++|+.||.++|+++++.||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~---------- 72 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLR-QQPPDLVILDVGLPDISGFELCRQLLAF---------- 72 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 47999999999999999999999999999999999999874 5679999999999999999999999963
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+++|||++|+.........++++|+++|+.||++.++|..++...+..
T Consensus 73 ------------~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 73 ------------HPALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred ------------CCCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 2468999999999888899999999999999999999999988876543
No 87
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.45 E-value=1.1e-12 Score=136.32 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=104.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCC-E-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCC---CCHHHHHHHHHhhccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGA-A-VVCVERGKKATELLMPPHQFDACFMDIQMPE---MDGFEATKIIREMEHNFN 784 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~-~-v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~---mdG~e~~~~IR~~~~~~~ 784 (856)
.+||||||++..+..++..|+..++ . +..+.++.++++.+. ...||+||+|+.||+ ++|++++++||+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~----- 77 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLP-KLDAHVLITDLSMPGDKYGDGITLIKYIKRH----- 77 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-hCCCCEEEEeCcCCCCCCCCHHHHHHHHHHH-----
Confidence 4799999999999999999988765 3 667899999999875 467999999999999 5999999999863
Q ss_pred ccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 785 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+++|||++|+........+++++|+++|+.||++.++|..+|+.....
T Consensus 78 -----------------~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 78 -----------------FPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred -----------------CCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 3468999999999999999999999999999999999999999876543
No 88
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.42 E-value=2.8e-12 Score=134.68 Aligned_cols=116 Identities=31% Similarity=0.455 Sum_probs=105.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||+|||++..+..+...|...|+.+..+.++.+++..+. .+.||+|++|+.||.++|+++++.||+.
T Consensus 7 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~-~~~~d~illd~~~~~~~g~~~~~~l~~~---------- 75 (240)
T CHL00148 7 EKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFR-KEQPDLVILDVMMPKLDGYGVCQEIRKE---------- 75 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 48999999999999999999999999999999999999874 4679999999999999999999999861
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
+++|||++|+....+...+++++|+++|+.||++.++|...+...+.
T Consensus 76 -------------~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 76 -------------SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred -------------CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999999999998877653
No 89
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.42 E-value=2.9e-12 Score=131.08 Aligned_cols=117 Identities=16% Similarity=0.297 Sum_probs=106.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
+||+|||++..+..+...|+..|+.+. .+.++.++++.+. ...||+|++|+.||.++|+++++.+|..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~---------- 70 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE-TLKPDIVIIDVDIPGVNGIQVLETLRKR---------- 70 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH-ccCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 699999999999999999999999987 6999999999885 4679999999999999999999999963
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+..|||++|+........+++++|+++|+.||++.++|..++......
T Consensus 71 ------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 71 ------------QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred ------------CCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 2357899999999999999999999999999999999999999887543
No 90
>PRK14084 two-component response regulator; Provisional
Probab=99.42 E-value=2.5e-12 Score=136.30 Aligned_cols=113 Identities=27% Similarity=0.348 Sum_probs=98.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcC-C-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYG-A-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g-~-~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
+||||||++..+..+..+|+..+ + .+..+.++.+|+..+. .+.||+||+|++||+|||+++++.||+.
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~-~~~~dlv~lDi~m~~~~G~~~~~~i~~~--------- 71 (246)
T PRK14084 2 KALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALL-INQYDIIFLDINLMDESGIELAAKIQKM--------- 71 (246)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 69999999999999999999876 4 5778999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
...+|||++|+.. +...++++.|+++|+.||++.++|..++.++.
T Consensus 72 -------------~~~~~iI~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~ 116 (246)
T PRK14084 72 -------------KEPPAIIFATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKVR 116 (246)
T ss_pred -------------CCCCEEEEEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHH
Confidence 2356789998864 35668999999999999999999999998875
No 91
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.42 E-value=2e-12 Score=150.55 Aligned_cols=117 Identities=26% Similarity=0.369 Sum_probs=107.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..+...|...|+.|..+.++.+|+..+. ...||+||+|+.||++||+++++.||..
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~-~~~~DlvllD~~lp~~dgl~~l~~ir~~---------- 72 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALA-SKTPDVLLSDIRMPGMDGLALLKQIKQR---------- 72 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEECCCCCCCCHHHHHHHHHhh----------
Confidence 48999999999999999999999999999999999999985 5679999999999999999999999863
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+.+|+|++|+....+...+++++|+++|+.||++.++|...+.+.+.
T Consensus 73 ------------~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 73 ------------HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred ------------CCCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 246899999999999999999999999999999999999998877653
No 92
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.41 E-value=2.6e-12 Score=149.07 Aligned_cols=118 Identities=35% Similarity=0.499 Sum_probs=108.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
..+||||||++..+..+...|...|+.|.++.++.+|+..+. ...||+||+|+.||.|+|+++++.||+.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlillD~~~p~~~g~~ll~~i~~~--------- 73 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFA-DIHPDVVLMDIRMPEMDGIKALKEMRSH--------- 73 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 458999999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+.+|||++|+....+...+++++|++||+.||++.++|...+.+.+.
T Consensus 74 -------------~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 74 -------------ETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred -------------CCCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 246899999999999999999999999999999999999999987654
No 93
>PRK15115 response regulator GlrR; Provisional
Probab=99.41 E-value=1.9e-12 Score=149.63 Aligned_cols=117 Identities=26% Similarity=0.426 Sum_probs=107.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++.++..+...|+..|+.|..+.++.+|+..+. ...||+||+|+.||+|||+++++.|+..
T Consensus 6 ~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~-~~~~dlvilD~~lp~~~g~~ll~~l~~~---------- 74 (444)
T PRK15115 6 AHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLN-REKVDLVISDLRMDEMDGMQLFAEIQKV---------- 74 (444)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHhc----------
Confidence 58999999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+.+|||++|+....+...+++++|+++|+.||++.++|...|.+.+.
T Consensus 75 ------------~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 75 ------------QPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred ------------CCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999987654
No 94
>PRK09483 response regulator; Provisional
Probab=99.40 E-value=4.4e-12 Score=131.06 Aligned_cols=117 Identities=24% Similarity=0.355 Sum_probs=105.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhhc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~-g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
+||||||++..+..+...|+.. |+.+. .+.++.+++..+. ...||+|++|+.||+++|+++++.|++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~--------- 72 (217)
T PRK09483 3 NVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCR-TNAVDVVLMDMNMPGIGGLEATRKILRY--------- 72 (217)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHH---------
Confidence 7999999999999999999874 88876 6899999998885 4679999999999999999999999863
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+++|||++|..........++..|+++|+.||++.++|..++.+++..
T Consensus 73 -------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g 121 (217)
T PRK09483 73 -------------TPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (217)
T ss_pred -------------CCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 3468999999999999999999999999999999999999999887654
No 95
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.39 E-value=2.2e-12 Score=156.87 Aligned_cols=402 Identities=21% Similarity=0.254 Sum_probs=278.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 003018 248 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM-DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKL 326 (856)
Q Consensus 248 ~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~-~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~ 326 (856)
..++++..+..++..++..++|..|+|++++++....+. ...+...+.-.+++..+....+..+++.-.+.++...|.-
T Consensus 374 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~ 453 (786)
T KOG0519|consen 374 RAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTG 453 (786)
T ss_pred hhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCc
Confidence 344455556667778888888999999999999988543 3344445555567777888889999999999999877777
Q ss_pred eeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhh--cCCCCeE-EEEEEEe
Q 003018 327 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK--FTEKGHI-FVTVYLV 403 (856)
Q Consensus 327 ~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiK--fT~~G~I-~v~v~~~ 403 (856)
..+...+.|..++.............+...+.+.+....|..+.+|..++.|++.+..+++.+ ++..|+= ...+...
T Consensus 454 ~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 533 (786)
T KOG0519|consen 454 LGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAE 533 (786)
T ss_pred ccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEec
Confidence 778888999999999999998888888888988888888889999999999999999999999 8877731 2333221
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCcc
Q 003018 404 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483 (856)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 483 (856)
.- ...+++...+ ...-|.. ..+.....+.+.+++++.|+....+...|..|
T Consensus 534 ~~-~~~vd~~~~~--------------~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 584 (786)
T KOG0519|consen 534 LL-GISVDVSLSL--------------SLAFWFL--------------DLSLSDLEVCKQIEDNEEGSNNGDISSSNPLH 584 (786)
T ss_pred cc-Cccccccccc--------------hhhhhhc--------------ccccccchheEEeeeccccccCCCcchhhhhh
Confidence 00 0000000000 0000100 00111135789999999999999999998888
Q ss_pred ccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEE-eCCC----ceEEEEEEEeCCCCCCCCccccccccCCCCCCCcc
Q 003018 484 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS-IPNI----GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 558 (856)
Q Consensus 484 ~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S-~~g~----GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (856)
.+....+++...+.+++++.|++..+.++|.+++.- ..+. -+.+.+................ ............
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~ 663 (786)
T KOG0519|consen 585 KSLRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSGN-PEKLAEPRDSKL 663 (786)
T ss_pred hccccchhhcccccccccccchhhHHhhhcccccccccccCCccHHHHHHhhccccccccccccCCC-cccccCcccccc
Confidence 877666655557889999999999999999998762 1111 1111111110000000000000 000111113455
Q ss_pred cCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 559 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 559 ~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
++|.++|+||++++++.|....|..+|..+..+.++.+|+..+. ....++++++|..+...++.. ...++++...
T Consensus 664 l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~-~~~~y~~ifmD~qMP~mDG~e---~~~~irk~~~- 738 (786)
T KOG0519|consen 664 LTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK-PPHSYDVIFMDLQMPEMDGYE---ATREIRKKER- 738 (786)
T ss_pred ccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC-CCCcccEEEEEcCCcccchHH---HHHHHHHhhc-
Confidence 78999999999999999999999999999999999999999887 557899999999998888733 3344544433
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
..+.++.++.+..+....+. ...|...++.||+....+..++++.+
T Consensus 739 ~~~pIvAlTa~~~~~~~~~c-~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 739 WHLPIVALTADADPSTEEEC-LEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred CCCCEEEEecCCcHHHHHHH-HHhCCceEEcccccHHHHHHHHHHHh
Confidence 33444444433333222222 33478899999999999999888765
No 96
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.39 E-value=2.6e-12 Score=148.54 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=102.9
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC-----CCHHHHHHHHHhhccccccc
Q 003018 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-----MDGFEATKIIREMEHNFNNR 786 (856)
Q Consensus 712 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~-----mdG~e~~~~IR~~~~~~~~~ 786 (856)
||||||++..+..+...| .||.|.++.++.+|++.+. ...||+||+|+.||+ |||++++++|++.
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~-~~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~------- 70 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVR-RHEPAVVTLDLGLPPDADGASEGLAALQQILAI------- 70 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhh-------
Confidence 689999999999999888 7999999999999999985 467999999999996 9999999999863
Q ss_pred ccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+++|||++|+..+.+...+|+++|++||+.||++.++|...|.+.+.
T Consensus 71 ---------------~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 71 ---------------APDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred ---------------CCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 346899999999999999999999999999999999999998876653
No 97
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.39 E-value=2e-12 Score=108.50 Aligned_cols=66 Identities=38% Similarity=0.748 Sum_probs=62.0
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhC-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003018 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMD-TELDVTQ-QDYVRTAQASGKALVSLINEVLDQAKVESG 324 (856)
Q Consensus 259 aks~fla~iSHElRTPL~~I~g~~~lL~~-~~l~~~q-~~~l~~i~~~~~~L~~lIndlLd~skie~g 324 (856)
+|.+|++++||||||||++|.++++++.+ ...++++ ++|++.+..++++|..+|+++++++|+++|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 47899999999999999999999999999 7788888 999999999999999999999999999987
No 98
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.39 E-value=5.6e-12 Score=128.10 Aligned_cols=114 Identities=21% Similarity=0.301 Sum_probs=101.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhhc-CCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~-g~~-v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
+||||||++..+..+...|... |+. +..+.++.+++..+. .+.||+|++|+.||+++|+++++.++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~---------- 71 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP-GRGVQVCICDISMPDISGLELLSQLPK---------- 71 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHcc----------
Confidence 7999999999999999999854 565 567899999999885 567999999999999999999988863
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+|||++|.....+....|+++|+++|+.||++.++|..++.+....
T Consensus 72 ---------------~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 72 ---------------GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred ---------------CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 36899999999999999999999999999999999999999987654
No 99
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.39 E-value=7.5e-12 Score=128.31 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=105.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~-g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+||||||++..+..+...|+.. ++.+. .+.++.++++.+. ...||+|++|+.||+++|+++++.||..
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l~~~-------- 74 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLR-TRPVDLIIMDIDLPGTDGFTFLKRIKQI-------- 74 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHh--------
Confidence 47999999999999999999876 57775 6889999998874 5679999999999999999999999963
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+.+|||++|+........+++++|+++|+.||++.++|..++...+..
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 75 --------------QSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred --------------CCCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 2358999999999989999999999999999999999999999887654
No 100
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.39 E-value=3.9e-12 Score=141.51 Aligned_cols=115 Identities=28% Similarity=0.336 Sum_probs=98.5
Q ss_pred eEEEEcCCHHHHHHHHHHHh-hcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLK-RYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~-~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
+||||||++..+..+..+|. ..|+.+. .+.++.+|++.+. ...||+|+||+.||+|||++++++|++.
T Consensus 2 ~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~-~~~pDlVllD~~mp~~~G~e~l~~l~~~--------- 71 (337)
T PRK12555 2 RIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCA-AQPPDVILMDLEMPRMDGVEATRRIMAE--------- 71 (337)
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-ccCCCEEEEcCCCCCCCHHHHHHHHHHH---------
Confidence 79999999999999999994 6688876 6899999999985 5679999999999999999999999862
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCC--HHhHHHHHHcCCCeEEeCCC---------CHHHHHHHHhhhCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVI--QATYEECLRSGMDGYVSKPF---------EAEQLYREVSRFFP 849 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~--~~~~~~~~~aG~d~yl~KP~---------~~~~L~~~l~~~~~ 849 (856)
.++|||++|+... .....+|+++|+++|+.||+ ..++|...|++...
T Consensus 72 --------------~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 72 --------------RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred --------------CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 2479999998754 45667899999999999999 66778888776543
No 101
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.38 E-value=2.5e-12 Score=148.59 Aligned_cols=116 Identities=31% Similarity=0.478 Sum_probs=106.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..+...|+..|+.|.++.++.+|+..+. ...||+||+|+.||.|+|++++++||+.
T Consensus 6 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~DlvilD~~m~~~~G~~~~~~ir~~---------- 74 (441)
T PRK10365 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR-EQVFDLVLCDVRMAEMDGIATLKEIKAL---------- 74 (441)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 58999999999999999999999999999999999999885 5679999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|...+.+.+
T Consensus 75 ------------~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l 121 (441)
T PRK10365 75 ------------NPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 (441)
T ss_pred ------------CCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999887654
No 102
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.38 E-value=4.8e-12 Score=133.30 Aligned_cols=114 Identities=24% Similarity=0.280 Sum_probs=96.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCC-E-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGA-A-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~-~-v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+||||||++..+..+..+|+..|. . +..+.++.+|++.+. ...||++|+|++||+|||+++++.++..
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~~dlv~lDi~~~~~~G~~~~~~l~~~-------- 72 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIH-RLKPDVVFLDIQMPRISGLELVGMLDPE-------- 72 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHhccc--------
Confidence 3799999999999999999998883 3 456899999999875 4679999999999999999999988631
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
...+||++|+.. +...++++.|+.+|+.||++.++|..++.++..
T Consensus 73 ---------------~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 73 ---------------HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred ---------------CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 134688888865 456789999999999999999999999988753
No 103
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.37 E-value=1.2e-11 Score=129.90 Aligned_cols=116 Identities=22% Similarity=0.361 Sum_probs=105.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||+|||++..+..+...|...|+.+..+.++.+|+..+. ...||+|++|+.||.++|+++++.||..
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~---------- 79 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVR-QTPPDLILLDLMLPGTDGLTLCREIRRF---------- 79 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 48999999999999999999999999999999999999885 5679999999999999999999999851
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
+.+|||++|..........++++|+++|+.||++.++|...+...+.
T Consensus 80 -------------~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 80 -------------SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred -------------CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 25899999999988888999999999999999999999988877654
No 104
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.37 E-value=4.1e-12 Score=147.66 Aligned_cols=114 Identities=25% Similarity=0.339 Sum_probs=105.2
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccc
Q 003018 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 791 (856)
Q Consensus 712 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~ 791 (856)
||||||++..+..+...|+..|+.|..+.++.+|+..+. .+.||+||+|+.||+|||+++++.|++.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~DlVllD~~~p~~~g~~ll~~l~~~------------ 67 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALA-RGQPDLLITDVRMPGEDGLDLLPQIKKR------------ 67 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHHh------------
Confidence 689999999999999999999999999999999999885 4679999999999999999999999863
Q ss_pred cchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 792 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 792 ~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+.+|||++|+........+++++|+++|+.||++.++|...+.+.+
T Consensus 68 ----------~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 114 (463)
T TIGR01818 68 ----------HPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERAL 114 (463)
T ss_pred ----------CCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999998754
No 105
>COG3614 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.35 E-value=3.8e-12 Score=132.54 Aligned_cols=136 Identities=16% Similarity=0.136 Sum_probs=103.0
Q ss_pred eeeeeecccchhHHHHHHhCc-eeeeecccccCCCCCCCC-CCCCCccceeEee--cCC-cceEEEeccCCChhchHHHH
Q 003018 5 RLLLIRVLRSEREEFEKQQGW-TIKRMDTFEHNPVHKDEP-SPIEEEYAPVIFA--QDT-VSHVISLDMLSGKEDRENVL 79 (856)
Q Consensus 5 ~~~~~~v~~~~r~~fe~~~~~-~i~~~~~~~~~~~~~~~p-~~~~~~y~pv~~~--~~~-~~~~~g~d~~s~~~~~~~~~ 79 (856)
+-+--.|-..+++.||...-. .+..++.+..+..++..| ...+++||||-|+ .+. |..++||||.|+|.||+|+.
T Consensus 102 ~q~igfv~~~~~e~~ear~~~~~l~~~~~~~p~~~~~i~pl~t~~~~rypI~~iePl~~~N~~aLGfDm~SE~~rR~A~d 181 (348)
T COG3614 102 LQWIGFVRPVQAETFEARLQQDFLENFQPTVPKTGEIIYPLGTDDPARYPIQYIEPLNYDNRKALGFDMESEPFRRAAAD 181 (348)
T ss_pred hhcccccchhhhccchhhhhhhhhhcCCCcccCCCcccccCCCCCcceeeeEeecCCCccchhhhcchhccCHHHHHHHH
Confidence 334456778889999965333 333344443444566778 8899999999664 444 88999999999999999999
Q ss_pred HHHhcCCceeecccccccc-----CcceEEEEEeeecCCCCCCCChHHHHHhhcceeeeecchHHHHH
Q 003018 80 RARASGKGVLTAPFRLLKT-----NRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVE 142 (856)
Q Consensus 80 ~a~~tg~~~~t~p~~l~~~-----~~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 142 (856)
.|++++...+|+|++|+|. ...|++++.|||+.+.++...+. ...+.||++..+...+++.
T Consensus 182 ~al~n~q~~aT~pv~LvQ~~g~~q~~~gfLv~~Pv~~s~~~~~~~~g--q~~l~Gfl~~~~~~~~~~q 247 (348)
T COG3614 182 EALENRQPHATGPVTLVQGGGDKQIVKGFLVYMPVFRSGDDESPLPG--QAVLVGFLYLATRFEKLVQ 247 (348)
T ss_pred HHHhcCCCcccCceeeeecccccccccceEEEEeeeccCCCCCCCcc--hhhhhhhHHHHHHHhhhhh
Confidence 9999999999999999984 23689999999998665443322 3356699988888877654
No 106
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.35 E-value=1.6e-11 Score=126.87 Aligned_cols=116 Identities=32% Similarity=0.494 Sum_probs=105.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+||++||++..+..+...|...|+.+.++.++.++++.+. ...||+|++|+.||.++|++.++.|+..
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~d~vild~~~~~~~~~~~~~~i~~~----------- 69 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQ-SEMYALAVLDINMPGMDGLEVLQRLRKR----------- 69 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCcHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999998774 4679999999999999999999999863
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+++|||++|.....+...+++++|+++|+.||++.++|...+...+.
T Consensus 70 -----------~~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 70 -----------GQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred -----------CCCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 236899999999999999999999999999999999999998887654
No 107
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.35 E-value=7.7e-12 Score=145.43 Aligned_cols=126 Identities=17% Similarity=0.199 Sum_probs=87.4
Q ss_pred hhcCcEEEEEeCCCCCceEe--ecHHHHHHHHHHHHHHHhhcCCCCe----EEEEEEEeeccccchhhhhhhccccCcCC
Q 003018 351 QDKGVELAVYISDRVPETLI--GDPGRFRQIITNLMGNSIKFTEKGH----IFVTVYLVEEVVDSIEVETELSSSKNTLS 424 (856)
Q Consensus 351 ~~k~i~l~~~~~~~~p~~v~--~D~~rl~qIl~NLl~NAiKfT~~G~----I~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 424 (856)
..+.+.+...+..+.+ .+. .|...|.+++.|||+||++|+..++ |.|.+..
T Consensus 21 ~~~~iS~aEfF~kN~~-~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~---------------------- 77 (795)
T PRK14868 21 SQREISIAEFFEKNKH-MLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEE---------------------- 77 (795)
T ss_pred hccccceeeecccCcc-eeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE----------------------
Confidence 4567888877765543 233 3578899999999999999997654 4444421
Q ss_pred CCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCC----CCCCCCcccch
Q 003018 425 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS----ISRTHGGTGIG 500 (856)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s----~~~~~~GtGLG 500 (856)
....+.|.|+|+|+||++++++++|++|++.+.- .++...|.|||
T Consensus 78 -------------------------------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLg 126 (795)
T PRK14868 78 -------------------------------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGIS 126 (795)
T ss_pred -------------------------------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehH
Confidence 0124689999999999999999999999865421 22334456666
Q ss_pred HHHHHHHHHHcCCEEEEEEeCCC-c--eEEEEEE
Q 003018 501 LSISKYLVGRMKGEIGFVSIPNI-G--STFTFTA 531 (856)
Q Consensus 501 LsI~k~lv~~mgG~I~v~S~~g~-G--stF~~~l 531 (856)
|++|...+ .+||.|.+.|..+. + +.|.+.+
T Consensus 127 lai~~sql-t~GgpI~I~S~~~~~~~g~~~~L~I 159 (795)
T PRK14868 127 AAVLYSQL-TSGKPAKITSRTQGSEEAQYFELII 159 (795)
T ss_pred HHHHHHHH-cCCCcEEEEeCCCCCCceeEEEEEE
Confidence 66665555 37888999999754 3 3345544
No 108
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.34 E-value=5.3e-12 Score=142.93 Aligned_cols=112 Identities=24% Similarity=0.383 Sum_probs=87.3
Q ss_pred EeecHHHHHHHHHHHHHHHhhcCCC-C---eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCC
Q 003018 369 LIGDPGRFRQIITNLMGNSIKFTEK-G---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 444 (856)
Q Consensus 369 v~~D~~rl~qIl~NLl~NAiKfT~~-G---~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (856)
+.+|...|.|++.||++||++|+.. | .|.|.+...
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~----------------------------------------- 60 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI----------------------------------------- 60 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----------------------------------------
Confidence 4578999999999999999999965 4 354444210
Q ss_pred CCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCC--CCCCCcccchHHHHHHHHHHcCCE-EEEEEeC
Q 003018 445 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 521 (856)
Q Consensus 445 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~--~~~~~GtGLGLsI~k~lv~~mgG~-I~v~S~~ 521 (856)
+...+.|+|+|+|+||+++.++++|++|++.+... ....||.|+||++|+.++++|+|. +.+.|..
T Consensus 61 -----------g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~ 129 (488)
T TIGR01052 61 -----------GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISST 129 (488)
T ss_pred -----------CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEec
Confidence 01135799999999999999999999998765432 224578999999999999999999 9999998
Q ss_pred CCceEEEEEEEe
Q 003018 522 NIGSTFTFTAVF 533 (856)
Q Consensus 522 g~GstF~~~lp~ 533 (856)
+ |+.|...+.+
T Consensus 130 ~-g~~~~~~~~~ 140 (488)
T TIGR01052 130 G-GEIYVYKMKL 140 (488)
T ss_pred C-CceEEEEEEE
Confidence 7 6766444433
No 109
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.32 E-value=2e-11 Score=136.79 Aligned_cols=114 Identities=25% Similarity=0.368 Sum_probs=96.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~-g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+||||||++.++..+..+|... |+.+. .+.++.+|++.+. .+.||+|++|++||.|||++++++||+.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~-~~~~DlVllD~~mp~~dgle~l~~i~~~-------- 74 (354)
T PRK00742 4 IRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIK-KLNPDVITLDVEMPVMDGLDALEKIMRL-------- 74 (354)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-hhCCCEEEEeCCCCCCChHHHHHHHHHh--------
Confidence 48999999999999999999876 88877 8899999999884 5679999999999999999999999862
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCC--HHhHHHHHHcCCCeEEeCCCCH---------HHHHHHHhhh
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVI--QATYEECLRSGMDGYVSKPFEA---------EQLYREVSRF 847 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~--~~~~~~~~~aG~d~yl~KP~~~---------~~L~~~l~~~ 847 (856)
. .+|||++|+... .....+++++|++||+.||++. ++|...++..
T Consensus 75 --------------~-~~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~ 130 (354)
T PRK00742 75 --------------R-PTPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAA 130 (354)
T ss_pred --------------C-CCCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHH
Confidence 1 289999998643 4566789999999999999953 5566666554
No 110
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.32 E-value=1.8e-11 Score=126.86 Aligned_cols=114 Identities=10% Similarity=0.097 Sum_probs=93.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHH-HHHHhhccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT-KIIREMEHNFNNR 786 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~-v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~-~~IR~~~~~~~~~ 786 (856)
..++++|||+|.....++..|.. ++. +..+.++.+|++.+. .||+||||+.||++||++++ +.||..
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~~---~~DvvllDi~~p~~~G~~~~~~~i~~~------- 78 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSRK------- 78 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccCC---CCCEEEEECCCCCccHHHHHHHHHHHh-------
Confidence 35799999999999999999984 444 556789999998752 39999999999999999997 567763
Q ss_pred ccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHH--cCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR--SGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~--aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+.++||++|+... ....++. +|+++|+.|+.+.++|.++|+..+..
T Consensus 79 ---------------~p~~~vvvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G 127 (216)
T PRK10100 79 ---------------NNNIKILLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred ---------------CCCCcEEEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcC
Confidence 34689999999866 3345555 59999999999999999999866543
No 111
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.31 E-value=1.8e-11 Score=125.84 Aligned_cols=106 Identities=15% Similarity=0.098 Sum_probs=89.4
Q ss_pred HHHHHHHHhh---cCCEEEEEcCHHHHHHHhCCCCCccEEE---EeCCCCCCCHHHHHHHHHhhcccccccccccccchh
Q 003018 722 LKVAAAGLKR---YGAAVVCVERGKKATELLMPPHQFDACF---MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIE 795 (856)
Q Consensus 722 ~~~l~~~L~~---~g~~v~~a~~g~eA~~~l~~~~~~Dlil---mDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~ 795 (856)
|..+..+|.. .|+.|.++.++.++++.+. ...||+++ +|+.||+|||++++++||+.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~-~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~---------------- 65 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMS-RISFSAVIFSLSAMRSERREGLSCLTELAIK---------------- 65 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhc-cCCCCEEEeeccccCCCCCCHHHHHHHHHHH----------------
Confidence 5667788865 5777889999999999885 56789998 78899999999999999873
Q ss_pred hhccCCCCCCcEEEEecCCCHHhHHHHH-HcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 796 AYENVSNFHVPILAMTADVIQATYEECL-RSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 796 ~~~~~~~~~~pIIalTa~~~~~~~~~~~-~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+.+|||++|+...+....+++ ++|++||+.||++.++|..+|+..+..
T Consensus 66 ------~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 66 ------FPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG 115 (207)
T ss_pred ------CCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCC
Confidence 3568999999987776666655 799999999999999999999887654
No 112
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.29 E-value=3.2e-11 Score=122.10 Aligned_cols=117 Identities=24% Similarity=0.357 Sum_probs=105.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..+...|...|+.+..+.++.++++.+. .+.||+|++|+.||.++|+++++.||+.
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~d~ii~d~~~~~~~~~~~~~~l~~~---------- 72 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALP-GLRFGCVVTDVRMPGIDGIELLRRLKAR---------- 72 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhc-cCCCCEEEEeCCCCCCcHHHHHHHHHhc----------
Confidence 57999999999999999999999999999999999998875 5679999999999999999999999862
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+++|+|++|+.........++++|+++|+.||++.++|...+...+.
T Consensus 73 ------------~~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~ 120 (202)
T PRK09390 73 ------------GSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred ------------CCCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHH
Confidence 246899999999999999999999999999999999999888876544
No 113
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.29 E-value=3.3e-11 Score=107.72 Aligned_cols=101 Identities=46% Similarity=0.591 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhhcCC--CCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCC
Q 003018 376 FRQIITNLMGNSIKFTE--KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 453 (856)
Q Consensus 376 l~qIl~NLl~NAiKfT~--~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (856)
|.+++.+|++||++|.. .+.|.|.+...
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~-------------------------------------------------- 30 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERD-------------------------------------------------- 30 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEec--------------------------------------------------
Confidence 46899999999999997 46665554321
Q ss_pred CcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEE
Q 003018 454 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 531 (856)
Q Consensus 454 ~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~l 531 (856)
...+.|.|.|+|.|+++..++++|.+|. ........++.|+||++|+++++.|||++++.+..+.|++|++++
T Consensus 31 ---~~~~~v~i~d~g~g~~~~~~~~~~~~~~--~~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 31 ---GDHLEIRVEDNGPGIPEEDLERIFERFS--DGSRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred ---CCEEEEEEEeCCCCCCHHHHHHHhhhhh--cCCCCCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 1246799999999999999999999882 112223446899999999999999999999999998999998863
No 114
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.28 E-value=1.9e-11 Score=132.11 Aligned_cols=102 Identities=25% Similarity=0.383 Sum_probs=90.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcC--CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g--~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
|||||||....|++++.+|...| ..|-++.||.+|++++. ...||+|.||+.||.|||++++++|-+.
T Consensus 3 rVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~-~~~PDVi~ld~emp~mdgl~~l~~im~~--------- 72 (350)
T COG2201 3 RVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVK-KLKPDVITLDVEMPVMDGLEALRKIMRL--------- 72 (350)
T ss_pred EEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHH-hcCCCEEEEecccccccHHHHHHHHhcC---------
Confidence 79999999999999999999998 55668999999999996 5789999999999999999999999752
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCC--HHhHHHHHHcCCCeEEeCCCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVI--QATYEECLRSGMDGYVSKPFE 836 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~--~~~~~~~~~aG~d~yl~KP~~ 836 (856)
..+|||++++-.. .+...+|++.|+-||+.||..
T Consensus 73 --------------~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 73 --------------RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred --------------CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 4689999987554 355668999999999999984
No 115
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.28 E-value=2.2e-11 Score=141.77 Aligned_cols=114 Identities=23% Similarity=0.318 Sum_probs=88.3
Q ss_pred eecHHHHH---HHHHHHHHHHhhcCCCC----eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCcccccc
Q 003018 370 IGDPGRFR---QIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 442 (856)
Q Consensus 370 ~~D~~rl~---qIl~NLl~NAiKfT~~G----~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (856)
.|++..++ +|+.||++||++|+..+ .|.|.+...
T Consensus 28 lGf~~~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~--------------------------------------- 68 (659)
T PRK14867 28 LGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKL--------------------------------------- 68 (659)
T ss_pred eechhHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC---------------------------------------
Confidence 45555555 99999999999998653 455554211
Q ss_pred CCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCC--CCCCCcccchHHHHHHHHHHc-CCEEEEEE
Q 003018 443 QDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRM-KGEIGFVS 519 (856)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~--~~~~~GtGLGLsI~k~lv~~m-gG~I~v~S 519 (856)
+...+.|.|+|+|+|||++.++++|++|+..+.-. ....|+.|+||+++..+++++ ||.+.+.|
T Consensus 69 -------------g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S 135 (659)
T PRK14867 69 -------------GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITT 135 (659)
T ss_pred -------------CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEE
Confidence 11246799999999999999999999998654311 134578999999999999886 55699999
Q ss_pred eCCCceEEEEEEEeCC
Q 003018 520 IPNIGSTFTFTAVFGN 535 (856)
Q Consensus 520 ~~g~GstF~~~lp~~~ 535 (856)
.++.|++|++.+++..
T Consensus 136 ~~g~G~~f~i~L~i~i 151 (659)
T PRK14867 136 STGDGKIHEMEIKMSV 151 (659)
T ss_pred EcCCCEEEEEEEEEEe
Confidence 9999999999988843
No 116
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.26 E-value=2.7e-11 Score=118.73 Aligned_cols=112 Identities=28% Similarity=0.360 Sum_probs=95.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v-~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
.++|++||++.++..+...|...||.+ .++.+|.++.+... .+.||+||||+.||.-|-.+..... +
T Consensus 6 lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~-~~~pDvVildie~p~rd~~e~~~~~-~---------- 73 (194)
T COG3707 6 LRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCE-RLQPDVVILDIEMPRRDIIEALLLA-S---------- 73 (194)
T ss_pred cceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHH-hcCCCEEEEecCCCCccHHHHHHHh-h----------
Confidence 589999999999999999999999975 47889999998874 6889999999999999944433322 2
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHh
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 845 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 845 (856)
.+...|||++|++.+++..+.+.++|+.+||.||++...|+-.|.
T Consensus 74 ------------~~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~ 118 (194)
T COG3707 74 ------------ENVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILD 118 (194)
T ss_pred ------------cCCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHH
Confidence 134579999999999999999999999999999999998877663
No 117
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.26 E-value=6.6e-11 Score=136.66 Aligned_cols=117 Identities=28% Similarity=0.428 Sum_probs=106.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+||+|||++..+..+...|...|+.+.++.++.+++..+. ...||+|++|+.||.++|+++++.||+..
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~l~~~i~~~~---------- 72 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICE-REQPDIILLDVMMPGMDGFEVCRRLKSDP---------- 72 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHh-hcCCCEEEEeCCCCCCCHHHHHHHHHcCc----------
Confidence 7999999999999999999999999999999999999885 46799999999999999999999998631
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
..+.+|||++|+........+++++|+++|+.||++.++|..++.+..
T Consensus 73 ----------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~ 120 (457)
T PRK09581 73 ----------ATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLT 120 (457)
T ss_pred ----------ccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 134689999999999999999999999999999999999998887653
No 118
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.26 E-value=4.5e-11 Score=114.99 Aligned_cols=98 Identities=14% Similarity=0.329 Sum_probs=77.1
Q ss_pred ecHHHHHHHHHHHHHHHhhcCC----CCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCC
Q 003018 371 GDPGRFRQIITNLMGNSIKFTE----KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 446 (856)
Q Consensus 371 ~D~~rl~qIl~NLl~NAiKfT~----~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (856)
.|...+.+++.|+++||++|+- .|.|.|++...+
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~------------------------------------------ 72 (137)
T TIGR01925 35 EELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIED------------------------------------------ 72 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeC------------------------------------------
Confidence 3667899999999999999852 356666654311
Q ss_pred CCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceE
Q 003018 447 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526 (856)
Q Consensus 447 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~Gst 526 (856)
..+.++|.|+|.||+ ..+++|+||+..+. ..+|+|+||++++++ .++++++|.++.|++
T Consensus 73 -----------~~~~i~I~D~G~gi~--~~~~~~~~~~~~~~----~~~~~GlGL~lv~~~----~~~l~~~~~~~~Gt~ 131 (137)
T TIGR01925 73 -----------HEVYITVRDEGIGIE--NLEEAREPLYTSKP----ELERSGMGFTVMENF----MDDVSVDSEKEKGTK 131 (137)
T ss_pred -----------CEEEEEEEEcCCCcC--chhHhhCCCcccCC----CCCCCcccHHHHHHh----CCcEEEEECCCCCeE
Confidence 147899999999998 37789999986533 235899999998874 579999999999999
Q ss_pred EEEEE
Q 003018 527 FTFTA 531 (856)
Q Consensus 527 F~~~l 531 (856)
|+++.
T Consensus 132 v~i~~ 136 (137)
T TIGR01925 132 IIMKK 136 (137)
T ss_pred EEEEe
Confidence 99863
No 119
>PRK13435 response regulator; Provisional
Probab=99.26 E-value=9.7e-11 Score=113.43 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=98.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNR 786 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~ 786 (856)
..+|||+||++.....+...|+..|+.+. ++.++.++++.+. ...||+|++|+.|+ .++|.+..+.+++.
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~dliivd~~~~~~~~~~~~~~~l~~~------- 76 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGR-RRQPDVALVDVHLADGPTGVEVARRLSAD------- 76 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhh-hcCCCEEEEeeecCCCCcHHHHHHHHHhC-------
Confidence 35899999999999999999999999977 7899999998874 45799999999998 59999999988751
Q ss_pred ccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.++|||+++.... ...++.+|+++|+.||++.++|.+.|.++..
T Consensus 77 ----------------~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 120 (145)
T PRK13435 77 ----------------GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSA 120 (145)
T ss_pred ----------------CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHh
Confidence 2589999997643 3567889999999999999999999988764
No 120
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.22 E-value=2.4e-10 Score=117.46 Aligned_cols=118 Identities=23% Similarity=0.342 Sum_probs=104.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhc-CCEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~-g~~v-~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+||||||++..+..+...|... ++.+ ..+.++.+++..+. ...||+|++|+.||.++|+++++.++..
T Consensus 7 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvl~d~~l~~~~~~~~~~~l~~~-------- 77 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-SLDPDLILLDLNMPGMNGLETLDKLREK-------- 77 (216)
T ss_pred eEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHHh--------
Confidence 48999999999999999999875 5654 46899999999884 4679999999999999999999999863
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+++|+|++++.........++++|+++|+.||++.++|...+.+....
T Consensus 78 --------------~~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 78 --------------SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred --------------CCCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 2357999999999999999999999999999999999999999887654
No 121
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.21 E-value=7.8e-11 Score=143.31 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=102.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++.++..+...|...|+.|..+.++.+|+..+. ...||+||+|+.||+|+|++++++||..
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~-~~~~Dlvl~d~~lp~~~g~~~l~~l~~~---------- 76 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVE-AGEIDCVVADHEPDGFDGLALLEAVRQT---------- 76 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhh-ccCCCEEEEeccCCCCcHHHHHHHHHhc----------
Confidence 47999999999999999999999999999999999999885 4679999999999999999999999863
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHH--HHHHHHhhhC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE--QLYREVSRFF 848 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~--~L~~~l~~~~ 848 (856)
.+.+|||++|+....+...+++++|+++|+.||.+.. .+..++.+..
T Consensus 77 ------------~~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~ 125 (665)
T PRK13558 77 ------------TAVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAV 125 (665)
T ss_pred ------------CCCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhh
Confidence 3468999999999999999999999999999997643 5555555443
No 122
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.21 E-value=2.5e-10 Score=116.20 Aligned_cols=118 Identities=22% Similarity=0.268 Sum_probs=103.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhc-CCEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~-g~~v-~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+||++||++..+..+...|... ++.+ ..+.++.+++..+. ...||+|++|+.||.++|+++++.+|+.
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~~~~~~~~l~~~-------- 74 (211)
T PRK15369 4 YKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACR-QLEPDIVILDLGLPGMNGLDVIPQLHQR-------- 74 (211)
T ss_pred cEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHH--------
Confidence 57999999999999999999875 4664 47889999998774 4679999999999999999999999863
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+.+|+|++|+.........++.+|+++|+.||++.++|...+..+...
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 75 --------------WPAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred --------------CCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 2357999999999999999999999999999999999999999877543
No 123
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.20 E-value=2.9e-10 Score=116.60 Aligned_cols=117 Identities=23% Similarity=0.291 Sum_probs=102.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhh-cCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~-~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+|||+||++..+..+...|+. .++.+. .+.++.+++..+. ...||+|++|+.||.++|+++++.+++.
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~~~~~~~~l~~~-------- 77 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLAN-RLDPDVILLDLNMKGMSGLDTLNALRRD-------- 77 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-hcCCCEEEEecCCCCCcHHHHHHHHHHh--------
Confidence 4799999999999999999975 577775 6899999998874 4679999999999999999999999863
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.++.|++++|..........++++|+++|+.||++.++|...+.+...
T Consensus 78 --------------~~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 78 --------------GVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred --------------CCCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 235789999998888888999999999999999999999999987543
No 124
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.20 E-value=5.9e-10 Score=102.99 Aligned_cols=119 Identities=32% Similarity=0.451 Sum_probs=104.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~-~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
.+||++|+++.....+...|...|+ .+.++.++.+++..+. ...||++++|..+|.++|++..+.++...
T Consensus 6 ~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~di~l~d~~~~~~~~~~~~~~l~~~~-------- 76 (129)
T PRK10610 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGFGFVISDWNMPNMDGLELLKTIRADG-------- 76 (129)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhh-ccCCCEEEEcCCCCCCCHHHHHHHHHhCC--------
Confidence 5899999999999999999999998 4778999999998874 46799999999999999999999998631
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
..+++|+++++..........++++|+++|+.||++.++|...+.+++.
T Consensus 77 ------------~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~ 125 (129)
T PRK10610 77 ------------AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 125 (129)
T ss_pred ------------CcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHH
Confidence 1245799999988888888899999999999999999999999887653
No 125
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.17 E-value=3.4e-10 Score=116.83 Aligned_cols=116 Identities=13% Similarity=0.023 Sum_probs=95.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCC---EEEEEcCHHHHHHHhCCCCCccEEEEeCC--CCCCCHHHHHHHHHhhcccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGA---AVVCVERGKKATELLMPPHQFDACFMDIQ--MPEMDGFEATKIIREMEHNFNN 785 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~---~v~~a~~g~eA~~~l~~~~~~DlilmDi~--MP~mdG~e~~~~IR~~~~~~~~ 785 (856)
.||||||++..+..++.+|...++ .|..+.++.+++..+. ...||+||||+. ||.+||.+++++|++.
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~-~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~------ 74 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD-SLRPSVVFINEDCFIHDASNSQRIKQIINQ------ 74 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh-ccCCCEEEEeCcccCCCCChHHHHHHHHHH------
Confidence 489999999999999999987653 3557899999999874 467999999976 8889999999999873
Q ss_pred cccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCe-EEeCCCCHHHHHHHHhhhCCC
Q 003018 786 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG-YVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 786 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~-yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+.+|||++|+........ ++..|.+. |+.|+.+.++|..+|+.....
T Consensus 75 ----------------~p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g 123 (207)
T PRK15411 75 ----------------HPNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKK 123 (207)
T ss_pred ----------------CCCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcC
Confidence 3468999999987765543 55566655 899999999999999877643
No 126
>PRK03660 anti-sigma F factor; Provisional
Probab=99.16 E-value=3.3e-10 Score=110.15 Aligned_cols=101 Identities=19% Similarity=0.356 Sum_probs=79.0
Q ss_pred cHHHHHHHHHHHHHHHhhcCC----CCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 003018 372 DPGRFRQIITNLMGNSIKFTE----KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 447 (856)
Q Consensus 372 D~~rl~qIl~NLl~NAiKfT~----~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (856)
|...+.+++.|++.||++|.. .|.|.|++...
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~-------------------------------------------- 71 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIE-------------------------------------------- 71 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEC--------------------------------------------
Confidence 678899999999999999863 25565554321
Q ss_pred CCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEE
Q 003018 448 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527 (856)
Q Consensus 448 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF 527 (856)
...+.|.|.|+|.||++ ..+.|+||++.+. ..+++|+||+|+++ +.+++++++.++.||+|
T Consensus 72 ---------~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~----~~~~~GlGL~i~~~----~~~~i~~~~~~~~Gt~~ 132 (146)
T PRK03660 72 ---------EEELEITVRDEGKGIED--IEEAMQPLYTTKP----ELERSGMGFTVMES----FMDEVEVESEPGKGTTV 132 (146)
T ss_pred ---------CCEEEEEEEEccCCCCh--HHHhhCCCcccCC----CCCCccccHHHHHH----hCCeEEEEecCCCcEEE
Confidence 11478999999999986 6689999986433 22578999999875 45689999999999999
Q ss_pred EEEEEeCC
Q 003018 528 TFTAVFGN 535 (856)
Q Consensus 528 ~~~lp~~~ 535 (856)
+++.++..
T Consensus 133 ~i~~~~~~ 140 (146)
T PRK03660 133 RMKKYLKK 140 (146)
T ss_pred EEEEEecc
Confidence 99998854
No 127
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.14 E-value=5.9e-09 Score=124.32 Aligned_cols=141 Identities=25% Similarity=0.411 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHhh--hcCcEEEEEeCCCCCceEeecHHHHHHH---HHHHHHHHhhcC-------------CCCeEE
Q 003018 336 RAILDDVLSLFSGKSQ--DKGVELAVYISDRVPETLIGDPGRFRQI---ITNLMGNSIKFT-------------EKGHIF 397 (856)
Q Consensus 336 ~~ll~~v~~~~~~~a~--~k~i~l~~~~~~~~p~~v~~D~~rl~qI---l~NLl~NAiKfT-------------~~G~I~ 397 (856)
..++...-.+.+..+. .|.++|.+.-.+ ...|+.-|.++ |.+||.||+.|. +.|.|.
T Consensus 393 ~~vf~RfpR~VRdla~~lgK~V~L~ieG~~-----telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~ 467 (716)
T COG0643 393 EQVFSRFPRMVRDLARKLGKQVELVIEGED-----TELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTIT 467 (716)
T ss_pred HHHHhhccHHHHHHHHHhCCeeEEEEecCC-----eeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEE
Confidence 3444444444444444 456666654322 34588888887 899999999994 246666
Q ss_pred EEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhh--
Q 003018 398 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA-- 475 (856)
Q Consensus 398 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~-- 475 (856)
++.+. ...++.|.|+|.|.||+.+.
T Consensus 468 L~A~~-----------------------------------------------------~gn~ivIev~DDG~Gid~ekI~ 494 (716)
T COG0643 468 LSAYH-----------------------------------------------------EGNNIVIEVSDDGAGIDREKIR 494 (716)
T ss_pred EEEEc-----------------------------------------------------CCCeEEEEEeeCCCCCCHHHHH
Confidence 66532 22368899999999999864
Q ss_pred ----------------------HhhhcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 003018 476 ----------------------QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533 (856)
Q Consensus 476 ----------------------~~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 533 (856)
..-||.|=|.+.... ..-.|-|.||=+||+-++.|||.|.|+|++|+||+|++.+|+
T Consensus 495 ~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~V-tdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPL 573 (716)
T COG0643 495 EKAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQV-TDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPL 573 (716)
T ss_pred HHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcchhh-hcccCCccCHHHHHHHHHHcCCEEEEEecCCCCeEEEEecCc
Confidence 345899955443332 245799999999999999999999999999999999999998
Q ss_pred CC
Q 003018 534 GN 535 (856)
Q Consensus 534 ~~ 535 (856)
+.
T Consensus 574 TL 575 (716)
T COG0643 574 TL 575 (716)
T ss_pred HH
Confidence 53
No 128
>PRK09191 two-component response regulator; Provisional
Probab=99.13 E-value=7.7e-10 Score=118.21 Aligned_cols=114 Identities=19% Similarity=0.239 Sum_probs=97.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCC-CCHHHHHHHHHhhcccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPE-MDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~-mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+||++||++..+..+...|+..|+.+. .+.++.++++.+. ...||+|++|+.||. ++|+++++.++..
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~-~~~~dlvi~d~~~~~~~~g~e~l~~l~~~-------- 208 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAK-KTRPGLILADIQLADGSSGIDAVNDILKT-------- 208 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHh-ccCCCEEEEecCCCCCCCHHHHHHHHHHh--------
Confidence 5799999999999999999999999987 7899999999885 467999999999995 8999999999862
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
. ++|||++|+...... .+...|+++|+.||++.++|...|.+...
T Consensus 209 --------------~-~~pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~ 253 (261)
T PRK09191 209 --------------F-DVPVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred --------------C-CCCEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHh
Confidence 2 689999999765443 34456788999999999999999988654
No 129
>PRK10693 response regulator of RpoS; Provisional
Probab=99.06 E-value=7.3e-10 Score=121.32 Aligned_cols=89 Identities=27% Similarity=0.357 Sum_probs=78.9
Q ss_pred EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHH
Q 003018 738 CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQA 817 (856)
Q Consensus 738 ~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~ 817 (856)
.+.+|.+|++.+. ...||+|++|+.||+|||++++++||+. .+.+|||++|+....+
T Consensus 2 ~a~~g~~al~~l~-~~~pDlVL~D~~mp~~~Gle~~~~ir~~----------------------~~~ipiI~lt~~~~~~ 58 (303)
T PRK10693 2 LAANGVDALELLG-GFTPDLIICDLAMPRMNGIEFVEHLRNR----------------------GDQTPVLVISATENMA 58 (303)
T ss_pred EeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc----------------------CCCCcEEEEECCCCHH
Confidence 5789999999885 4679999999999999999999999973 2468999999999999
Q ss_pred hHHHHHHcCCCeEEeCCC-CHHHHHHHHhhhCC
Q 003018 818 TYEECLRSGMDGYVSKPF-EAEQLYREVSRFFP 849 (856)
Q Consensus 818 ~~~~~~~aG~d~yl~KP~-~~~~L~~~l~~~~~ 849 (856)
...+++++|++||+.||+ +.++|...|.+.+.
T Consensus 59 ~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~ 91 (303)
T PRK10693 59 DIAKALRLGVQDVLLKPVKDLNRLREMVFACLY 91 (303)
T ss_pred HHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhh
Confidence 999999999999999999 58999888877653
No 130
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.04 E-value=1.3e-07 Score=99.98 Aligned_cols=193 Identities=12% Similarity=0.213 Sum_probs=135.4
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 003018 258 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337 (856)
Q Consensus 258 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~ 337 (856)
..+.+...-+-.||-.-+++|.-.+.++++-..+++.+.....|+.-+.++-.-+..+|..-|- -...+.-+.+
T Consensus 301 siRk~vARELHDeIGQnITAIr~Qa~ivkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLRP------~~LDdL~l~q 374 (497)
T COG3851 301 SIRKDVARELHDEIGQNITAIRTQAGIVKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLRP------RQLDDLTLEQ 374 (497)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcCC------cccccccHHH
Confidence 3455555566678888999999888888775555555555556665555555555555533221 1123456778
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhhhhc
Q 003018 338 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 417 (856)
Q Consensus 338 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~ 417 (856)
.+..+++.+.. .++||...++...+....-..-..-+.++...+++|-+|+.+...|.+..+..++
T Consensus 375 ai~~l~~Em~~--~ergihcq~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e------------ 440 (497)
T COG3851 375 AIRSLLREMEL--EERGIHCQLDWRINETALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQDE------------ 440 (497)
T ss_pred HHHHHHHHhhh--hhcCeEEEeccccCcccCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeCCc------------
Confidence 88888877754 5778887776643211100011224778899999999999999888888765332
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcc
Q 003018 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 497 (856)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~Gt 497 (856)
.+.++|+|+|+|+|+. .+-+
T Consensus 441 -----------------------------------------~l~Lei~DdG~Gl~~~-------------------~~v~ 460 (497)
T COG3851 441 -----------------------------------------RLMLEIEDDGSGLPPG-------------------SGVQ 460 (497)
T ss_pred -----------------------------------------EEEEEEecCCcCCCCC-------------------CCcc
Confidence 4789999999999863 1347
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEE
Q 003018 498 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532 (856)
Q Consensus 498 GLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp 532 (856)
|.||.=.++=|.++||+++++| ..||...+++|
T Consensus 461 G~Gl~GmrERVsaLGG~ltlss--q~GTrviVnLP 493 (497)
T COG3851 461 GFGLTGMRERVSALGGTLTLSS--QHGTRVIVNLP 493 (497)
T ss_pred CcCcchHHHHHHHhCCceEEEe--ccCcEEEEecc
Confidence 8999999999999999999999 67899999987
No 131
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.03 E-value=1.5e-07 Score=105.98 Aligned_cols=122 Identities=20% Similarity=0.305 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhhhhccc
Q 003018 340 DDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSS 419 (856)
Q Consensus 340 ~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~ 419 (856)
..+..........-++.+.....+..+..-..-..-+-+|+.--++||+||+..-++.|++...+
T Consensus 244 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~~--------------- 308 (365)
T COG4585 244 EALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERTD--------------- 308 (365)
T ss_pred HHHHHHHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEcC---------------
Confidence 33333333333445556655443211111123467788999999999999998888888775322
Q ss_pred cCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcccc
Q 003018 420 KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 499 (856)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~GtGL 499 (856)
..++++|.|+|.|.+++.. +.|+
T Consensus 309 --------------------------------------~~l~l~V~DnG~Gf~~~~~-------------------~~~~ 331 (365)
T COG4585 309 --------------------------------------DELRLEVIDNGVGFDPDKE-------------------GGGF 331 (365)
T ss_pred --------------------------------------CEEEEEEEECCcCCCcccc-------------------CCCc
Confidence 2488999999999886421 1689
Q ss_pred hHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 003018 500 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533 (856)
Q Consensus 500 GLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 533 (856)
||.=-|+=|+.+||++.+.|.+|+||++++++|+
T Consensus 332 GL~~mreRv~~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 332 GLLGMRERVEALGGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred chhhHHHHHHHcCCEEEEEecCCCceEEEEecCC
Confidence 9999999999999999999999999999999984
No 132
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.03 E-value=4e-09 Score=93.28 Aligned_cols=112 Identities=35% Similarity=0.523 Sum_probs=99.8
Q ss_pred EEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccccc
Q 003018 713 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 792 (856)
Q Consensus 713 LvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~ 792 (856)
|++|+++..+..+...|...|+.+..+.++.+++..+. .+.||++++|..++..+|++..+.++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~~~~~~~l~~~------------- 66 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLA-EEKPDLILLDIMMPGMDGLELLRRIRKR------------- 66 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHH-hCCCCEEEEecCCCCCchHHHHHHHHHh-------------
Confidence 57899999999999999999999999999999998874 4679999999999999999999999863
Q ss_pred chhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhh
Q 003018 793 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847 (856)
Q Consensus 793 ~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 847 (856)
.+.+|+++++.........+++..|+++|+.||++..+|...+.+.
T Consensus 67 ---------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 67 ---------GPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ---------CCCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 2357899999887788888999999999999999999999988764
No 133
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.97 E-value=1.9e-07 Score=97.00 Aligned_cols=194 Identities=22% Similarity=0.302 Sum_probs=132.4
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHH
Q 003018 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 338 (856)
Q Consensus 259 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~l 338 (856)
.|..++.=+.|-+++-|..|..++.+-.....++ -.++++..+.-... +.++.+.|--+ .....+...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~s-la~~He~L~~s---------~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQS-LALIHELLYKS---------GDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHH-HHHHHHHHhcC---------CcceEcHHHH
Confidence 4667888899999999999999988765544443 33333333332222 23344444332 1235677888
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeec-HHHHHHHHHHHHHHHhhcC----CCCeEEEEEEEeeccccchhhh
Q 003018 339 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD-PGRFRQIITNLMGNSIKFT----EKGHIFVTVYLVEEVVDSIEVE 413 (856)
Q Consensus 339 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D-~~rl~qIl~NLl~NAiKfT----~~G~I~v~v~~~~~~~~~~~~~ 413 (856)
++.+...+.+....+++.+.....+.+ .+--| ..-|--|+.-|++||+||. +.|.|.|+++..+.
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~--~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~-------- 156 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNV--FLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGD-------- 156 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCce--EECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCC--------
Confidence 888777776654556677776655432 22222 4568889999999999996 36787777654321
Q ss_pred hhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCC
Q 003018 414 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 493 (856)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~ 493 (856)
.....+.|.|+|.|+|.+. + .
T Consensus 157 -------------------------------------------~~~~~l~v~deg~G~~~~~------~----------~ 177 (221)
T COG3920 157 -------------------------------------------GGRFLLTVWDEGGGPPVEA------P----------L 177 (221)
T ss_pred -------------------------------------------CCeEEEEEEECCCCCCCCC------C----------C
Confidence 0035789999999999742 0 0
Q ss_pred CCcccchHHHHHHHH-HHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 494 HGGTGIGLSISKYLV-GRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 494 ~~GtGLGLsI~k~lv-~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
...|+|+.+++.+| ++.||.+...+.. ||+|++++|...
T Consensus 178 -~~~g~G~~Lv~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~~~ 217 (221)
T COG3920 178 -SRGGFGLQLVERLVPEQLGGELEDERPD--GTEFRLRFPLSE 217 (221)
T ss_pred -CCCCcHHHHHHHHHHHHcCCeEEEEcCC--CEEEEEEEeccc
Confidence 24699999999999 8999999887765 999999998753
No 134
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=98.88 E-value=8.5e-07 Score=99.13 Aligned_cols=184 Identities=22% Similarity=0.325 Sum_probs=128.8
Q ss_pred HHhHhhhhhHHHHHHHHHH----HHhCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 003018 265 ATVSHEIRTPMNGVLGMLD----MLMDT---ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337 (856)
Q Consensus 265 a~iSHElRTPL~~I~g~~~----lL~~~---~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~ 337 (856)
++|+-||---|.-.+.++. +|... ...++.++.+..+....+.--.-+.++|.--|+ ....-+|..
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~ 446 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPP 446 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHH
Confidence 4566777777666666654 34321 233445666666666655555566666665443 233457778
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecH---HHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhh
Q 003018 338 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP---GRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVET 414 (856)
Q Consensus 338 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~---~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~ 414 (856)
-++++++.|+. +.++.+.+++ .+|... -|+ ..+-||+.-=++||+||+..-+|.|+++...
T Consensus 447 AL~~~~~~f~~---qtg~~~~l~~--qlp~~~-lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~~---------- 510 (574)
T COG3850 447 ALEQMLAEFSN---QTGITVTLDY--QLPPRA-LPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQND---------- 510 (574)
T ss_pred HHHHHHHHHHh---ccCCeEEEec--cCCCCC-CCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecC----------
Confidence 88888887765 4566666654 344322 233 4567888999999999999888888875321
Q ss_pred hhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCC
Q 003018 415 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 494 (856)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~ 494 (856)
..+.+.|+|+|+|||+.. . .
T Consensus 511 -------------------------------------------g~~~~~VeDnG~Gi~~~~-----------e------~ 530 (574)
T COG3850 511 -------------------------------------------GQVTLTVEDNGVGIDEAA-----------E------P 530 (574)
T ss_pred -------------------------------------------CeEEEEEeeCCcCCCCcc-----------C------C
Confidence 246899999999999751 1 1
Q ss_pred CcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEE
Q 003018 495 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532 (856)
Q Consensus 495 ~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp 532 (856)
+| --||.|-+.=++.+||.+.|++.+|+||++.++++
T Consensus 531 ~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~ 567 (574)
T COG3850 531 SG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFP 567 (574)
T ss_pred CC-CcchHHHHHHHHHhcCeEEEeecCCCCeEEEEEec
Confidence 23 57899999999999999999999999999999986
No 135
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.85 E-value=4.4e-08 Score=96.97 Aligned_cols=103 Identities=19% Similarity=0.293 Sum_probs=79.0
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 003018 372 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 447 (856)
Q Consensus 372 D~~rl~qIl~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (856)
|...++-++..++.||++|... |.|.|++...+
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~------------------------------------------- 75 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYE------------------------------------------- 75 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEEC-------------------------------------------
Confidence 5677889999999999999843 55666654321
Q ss_pred CCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEE
Q 003018 448 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527 (856)
Q Consensus 448 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF 527 (856)
..+.|.|+|+|+|++++.....|.||+...+.. ...+.|+||.++++|++. +.+.+ ..|++|
T Consensus 76 ----------~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~--~~~~~G~GL~li~~l~d~----v~~~~--~~G~~v 137 (161)
T PRK04069 76 ----------DRLEIVVADNGVSFDYETLKSKLGPYDISKPIE--DLREGGLGLFLIETLMDD----VTVYK--DSGVTV 137 (161)
T ss_pred ----------CEEEEEEEECCcCCChHHhccccCCCCCCCccc--ccCCCceeHHHHHHHHHh----EEEEc--CCCcEE
Confidence 257899999999999999999999987654322 234679999999999986 66665 468999
Q ss_pred EEEEEeCC
Q 003018 528 TFTAVFGN 535 (856)
Q Consensus 528 ~~~lp~~~ 535 (856)
+++-.+..
T Consensus 138 ~~~k~~~~ 145 (161)
T PRK04069 138 SMTKYINR 145 (161)
T ss_pred EEEEEcCc
Confidence 98876644
No 136
>PRK15029 arginine decarboxylase; Provisional
Probab=98.81 E-value=2.5e-08 Score=119.53 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=84.8
Q ss_pred eEEEEcCCHH--------HHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHH----HHHHHHHh
Q 003018 711 KILIVDDNNV--------NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF----EATKIIRE 778 (856)
Q Consensus 711 ~ILvVdDn~~--------n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~----e~~~~IR~ 778 (856)
+||||||+.. .++.++..|+..||+|..+.++.+|++.+.....||+||+|++||+|||+ +++++||+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR~ 81 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHHh
Confidence 6999999995 69999999999999999999999999998533579999999999999998 89999996
Q ss_pred hcccccccccccccchhhhccCCCCCCcEEEEecCCC--HHhHHHHHHcCCCeEEeCCCCHHH
Q 003018 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI--QATYEECLRSGMDGYVSKPFEAEQ 839 (856)
Q Consensus 779 ~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~--~~~~~~~~~aG~d~yl~KP~~~~~ 839 (856)
. ...+|||++|+... +....+.++ -+++|+-+--+..+
T Consensus 82 ~----------------------~~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 121 (755)
T PRK15029 82 R----------------------QQNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTAD 121 (755)
T ss_pred h----------------------CCCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHH
Confidence 2 24699999999886 332222222 25677777655444
No 137
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.77 E-value=3.9e-06 Score=97.38 Aligned_cols=65 Identities=28% Similarity=0.282 Sum_probs=54.9
Q ss_pred eEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCc-ccchHHHHHHHHHHcCCE--EEEEEeCCCceEEEEEEEeC
Q 003018 459 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG-TGIGLSISKYLVGRMKGE--IGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 459 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~G-tGLGLsI~k~lv~~mgG~--I~v~S~~g~GstF~~~lp~~ 534 (856)
.+.++|.|+|+||+++....+.+.- ++ .|+||+=+++.++.+-|. +.++|++++||...+.+|..
T Consensus 386 ~i~i~i~Dng~g~~~~~~~~~~~~~-----------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~ 453 (456)
T COG2972 386 VIQISISDNGPGIDEEKLEGLSTKG-----------ENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKR 453 (456)
T ss_pred EEEEEEeeCCCCCChhHHHHHHhhc-----------cCcccccHHHHHHHHHHeeCCcceeEeecCCCcEEEEEEeehh
Confidence 5789999999999998887654321 22 599999999999999988 58999999999999998864
No 138
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.73 E-value=4.7e-08 Score=103.29 Aligned_cols=112 Identities=29% Similarity=0.367 Sum_probs=93.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhhc-CCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~-g~~-v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
+|+++||++..+..+...+... ++. +..+.++.++++.+. ...+|++|+||+||.|+|+++.++||...
T Consensus 3 ~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fldI~~~~~~G~ela~~i~~~~-------- 73 (244)
T COG3279 3 KVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQ-GLRPDLVFLDIAMPDINGIELAARIRKGD-------- 73 (244)
T ss_pred cEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHh-ccCCCeEEEeeccCccchHHHHHHhcccC--------
Confidence 6999999999999999999842 222 336889999999885 45899999999999999999999999742
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhh
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 847 (856)
+..+|+++|++.. ....+++..+-||+.||++.+.|...+.+.
T Consensus 74 --------------~~~~Ivfvt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~ 116 (244)
T COG3279 74 --------------PRPAIVFVTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERL 116 (244)
T ss_pred --------------CCCeEEEEEehHH--HHHHHHhHHHHhhhcCcchHHHHHHHHHHH
Confidence 3568999998754 455667888899999999999999999753
No 139
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.62 E-value=1.8e-07 Score=76.53 Aligned_cols=65 Identities=45% Similarity=0.782 Sum_probs=57.8
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003018 260 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 324 (856)
Q Consensus 260 ks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g 324 (856)
+.+|++.++|||||||++|.++++++.+...++.+.++++.+..+++++..++++++++++.+.+
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 66 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIEAG 66 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 46799999999999999999999998876666666889999999999999999999999998753
No 140
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=98.60 E-value=1e-05 Score=89.25 Aligned_cols=129 Identities=22% Similarity=0.344 Sum_probs=91.8
Q ss_pred EeecHHHHHHHHHHHHHHHhhh--cCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcC-----CCCeEEEEEEEe
Q 003018 331 VSFNLRAILDDVLSLFSGKSQD--KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-----EKGHIFVTVYLV 403 (856)
Q Consensus 331 ~~~~L~~ll~~v~~~~~~~a~~--k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT-----~~G~I~v~v~~~ 403 (856)
..+.|.+-++.+-..++-+-.. -.+.+.+++++.+-. +. =|. -+|.-|+.|||||. +.|.|.|+|...
T Consensus 415 ~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~-~~-iP~---filQPLVENAIKHG~~~~~~~g~V~I~V~~~ 489 (557)
T COG3275 415 EIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQ-VQ-IPS---FILQPLVENAIKHGISQLKDTGRVTISVEKE 489 (557)
T ss_pred eEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhh-cc-Cch---hhhhHHHHHHHHhcccchhcCCceEEEEEEe
Confidence 3577888888877666543222 234455555443321 11 112 25667899999995 347888877543
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCcc
Q 003018 404 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483 (856)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 483 (856)
+ ..+++.|+|+|.||+++
T Consensus 490 d-----------------------------------------------------~~l~i~VeDng~li~p~--------- 507 (557)
T COG3275 490 D-----------------------------------------------------ADLRIEVEDNGGLIQPD--------- 507 (557)
T ss_pred C-----------------------------------------------------CeEEEEEecCCCCcCCC---------
Confidence 2 13789999999999986
Q ss_pred ccCCCCCCCCCCcccchHHHHHHHHHHcCC---EEEEEEeCCCceEEEEEEEeCC
Q 003018 484 MQVGPSISRTHGGTGIGLSISKYLVGRMKG---EIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 484 ~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG---~I~v~S~~g~GstF~~~lp~~~ 535 (856)
...|+|+||+.+++=++.+=| -++++|.+..||+++|.+|+..
T Consensus 508 ---------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~ 553 (557)
T COG3275 508 ---------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQR 553 (557)
T ss_pred ---------CCCCCChHHHHHHHHHHHhcCccccceEEeccCCCcEEEEEecCcc
Confidence 125899999999999988888 7999999999999999999854
No 141
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.59 E-value=5.8e-07 Score=88.71 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCC----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCC
Q 003018 373 PGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 448 (856)
Q Consensus 373 ~~rl~qIl~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (856)
...+.-++..++.||++|+.. |.|.|.+...+
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~-------------------------------------------- 75 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYE-------------------------------------------- 75 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeC--------------------------------------------
Confidence 446888999999999999743 56766654321
Q ss_pred CCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEE
Q 003018 449 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 528 (856)
Q Consensus 449 ~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~ 528 (856)
..+.|.|.|+|.|++++.....|.|+...++.. ...+.|+||.|+++|++ ++.+.+ +.|++++
T Consensus 76 ---------~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~--~~~~~G~GL~Li~~L~D----~v~~~~--~~G~~l~ 138 (159)
T TIGR01924 76 ---------DRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPID--DLREGGLGLFLIETLMD----EVEVYE--DSGVTVA 138 (159)
T ss_pred ---------CEEEEEEEEcccccCchhhccccCCCCCCCCcc--cCCCCccCHHHHHHhcc----EEEEEe--CCCEEEE
Confidence 247899999999999999888898876543322 23467999999999998 677776 4578888
Q ss_pred EEEEeC
Q 003018 529 FTAVFG 534 (856)
Q Consensus 529 ~~lp~~ 534 (856)
++..+.
T Consensus 139 l~k~~~ 144 (159)
T TIGR01924 139 MTKYLN 144 (159)
T ss_pred EEEEEc
Confidence 876553
No 142
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.48 E-value=6.2e-05 Score=79.27 Aligned_cols=184 Identities=18% Similarity=0.234 Sum_probs=123.6
Q ss_pred hhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeE---eecHHHHHHHHHHHH
Q 003018 270 EIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV---SFNLRAILDDVLSLF 346 (856)
Q Consensus 270 ElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~---~~~L~~ll~~v~~~~ 346 (856)
-|..-|-+..-.++++...-.++.+ .....+.+++.+|..-|+++--+|. .|.+. ..-|..-++-.++.|
T Consensus 261 GIsQ~LVs~k~~lela~~ql~~p~~-~a~~aieKaa~aL~~Ai~EVRRiSH------~LRP~~LDDLGL~aALe~L~~~f 333 (459)
T COG4564 261 GISQNLVSVKCALELAARQLNPPKG-GAHPAIEKAADALNGAIKEVRRISH------DLRPRALDDLGLTAALEALLEDF 333 (459)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCCC-CCchhhhhHHHHHHHHHHHHHHhcc------ccChhhhhhhhHHHHHHHHHHHh
Confidence 3455566777777777654322222 1225567777888888888876653 12222 123444555555555
Q ss_pred HHHhhhcCcEEEEEeCCCCCceEee-cHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhhhhccccCcCCC
Q 003018 347 SGKSQDKGVELAVYISDRVPETLIG-DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 425 (856)
Q Consensus 347 ~~~a~~k~i~l~~~~~~~~p~~v~~-D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (856)
+ ...|+++.+..+. .|..+.- -...|.+|...-++|-=+++..-.|.|...
T Consensus 334 ~---~~tg~~itle~~~-~p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~------------------------ 385 (459)
T COG4564 334 K---ERTGIEITLEFDT-QPGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQ------------------------ 385 (459)
T ss_pred h---hccCeEEEEEecC-CcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEec------------------------
Confidence 5 5778998887654 3444332 346788999999999988885444444331
Q ss_pred CCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcccchHHHHH
Q 003018 426 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISK 505 (856)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~GtGLGLsI~k 505 (856)
.....++..|.|+|+|.+.+... ..-.||||--.+
T Consensus 386 -----------------------------~~~d~vql~vrDnG~GF~~~~~~----------------~~~~GiGLRNMr 420 (459)
T COG4564 386 -----------------------------QMGDMVQLMVRDNGVGFSVKEAL----------------QKRHGIGLRNMR 420 (459)
T ss_pred -----------------------------cCCcceEEEEecCCCCccchhhc----------------cCccccccccHH
Confidence 11234789999999999865331 112699999999
Q ss_pred HHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 003018 506 YLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 506 ~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 534 (856)
+=+...||+..++|.|. ||..++.+|..
T Consensus 421 ERma~~GG~~~v~s~p~-GTel~v~Lp~~ 448 (459)
T COG4564 421 ERMAHFGGELEVESSPQ-GTELTVLLPLD 448 (459)
T ss_pred HHHHHhCceEEEEecCC-CcEEEEEecch
Confidence 99999999999999998 99999999874
No 143
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.46 E-value=2.2e-05 Score=84.34 Aligned_cols=183 Identities=21% Similarity=0.282 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce------eEeEeecHHHHHHHHHHHHHHHhhhcCc---EEEEEeCCCC
Q 003018 295 QDYVRTAQASGKALVSLINEVLDQAKVESGKLE------LEAVSFNLRAILDDVLSLFSGKSQDKGV---ELAVYISDRV 365 (856)
Q Consensus 295 ~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~------l~~~~~~L~~ll~~v~~~~~~~a~~k~i---~l~~~~~~~~ 365 (856)
+.+++....+=-.+.-|+|+=+-+-- +|+-+ .-...+++.++++++.+..+..+..+=+ ++.+.-+...
T Consensus 174 qyFLdr~y~sRIsiRMLv~qh~~l~~--~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~ 251 (414)
T KOG0787|consen 174 QYFLDRFYMSRISIRMLVNQHLLLFA--SGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNAL 251 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheec--CCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccc
Confidence 34455544433333445555443322 44433 1123578999999999888877776543 3333333333
Q ss_pred CceEeecHHHHHHHHHHHHHHHhhcCC-----CCe----EEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccC
Q 003018 366 PETLIGDPGRFRQIITNLMGNSIKFTE-----KGH----IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 436 (856)
Q Consensus 366 p~~v~~D~~rl~qIl~NLl~NAiKfT~-----~G~----I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (856)
...| .=|.-|..++.-|+.||+++|- .|. |.|.|...
T Consensus 252 ~~~v-yvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~g--------------------------------- 297 (414)
T KOG0787|consen 252 SFTV-YVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKG--------------------------------- 297 (414)
T ss_pred cCcc-ccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecC---------------------------------
Confidence 2221 3588999999999999999982 233 44443211
Q ss_pred ccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCC------CCCCCCcccchHHHHHHHHHH
Q 003018 437 GFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGR 510 (856)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s------~~~~~~GtGLGLsI~k~lv~~ 510 (856)
...+.|.|+|.|-||+.+..+++|.=-|.+.+. ....-.|.|-||.|||...+.
T Consensus 298 --------------------deDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~y 357 (414)
T KOG0787|consen 298 --------------------DEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARY 357 (414)
T ss_pred --------------------CcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHH
Confidence 113678899999999999999999765443322 122336999999999999999
Q ss_pred cCCEEEEEEeCCCceEEEEEEEe
Q 003018 511 MKGEIGFVSIPNIGSTFTFTAVF 533 (856)
Q Consensus 511 mgG~I~v~S~~g~GstF~~~lp~ 533 (856)
.||++.+.|-.|-||-..+.+..
T Consensus 358 f~Gdl~L~SleG~GTD~yI~Lk~ 380 (414)
T KOG0787|consen 358 FGGDLKLQSLEGIGTDVYIYLKA 380 (414)
T ss_pred hCCCeeEEeeeccccceEEEecc
Confidence 99999999999999999998743
No 144
>PF14501 HATPase_c_5: GHKL domain
Probab=98.40 E-value=4.5e-06 Score=75.62 Aligned_cols=94 Identities=26% Similarity=0.343 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHHHHHhhcCC----CCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 003018 372 DPGRFRQIITNLMGNSIKFTE----KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 447 (856)
Q Consensus 372 D~~rl~qIl~NLl~NAiKfT~----~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (856)
|+.-|..+|.||++||++++. +..|.+.++..
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~-------------------------------------------- 37 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREE-------------------------------------------- 37 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEec--------------------------------------------
Confidence 456788999999999999873 23455544321
Q ss_pred CCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEE
Q 003018 448 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527 (856)
Q Consensus 448 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF 527 (856)
...+.|.|+++-.+ +. ++++ +++...++.|+||.+++++++.++|.+.++++.+ .|
T Consensus 38 ---------~~~~~i~i~N~~~~---~~-~~~~--------~~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~~~---~f 93 (100)
T PF14501_consen 38 ---------NGFLVIIIENSCEK---EI-EKLE--------SSSSKKKGHGIGLKNVKKILEKYNGSLSIESEDG---IF 93 (100)
T ss_pred ---------CCEEEEEEEECCCC---cc-cccc--------ccccCCCCCCcCHHHHHHHHHHCCCEEEEEEECC---EE
Confidence 12577889888544 11 2222 1234557899999999999999999999887755 67
Q ss_pred EEEEEe
Q 003018 528 TFTAVF 533 (856)
Q Consensus 528 ~~~lp~ 533 (856)
++++.+
T Consensus 94 ~~~i~i 99 (100)
T PF14501_consen 94 TVKIVI 99 (100)
T ss_pred EEEEEE
Confidence 776644
No 145
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.33 E-value=4.5e-06 Score=105.61 Aligned_cols=118 Identities=15% Similarity=0.168 Sum_probs=99.0
Q ss_pred cCCCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccc
Q 003018 706 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785 (856)
Q Consensus 706 ~~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~ 785 (856)
.+.+++||++||++.++..+..+|...|+.+..+.++.+ + ....||++++|..||.+++.+..........
T Consensus 533 ~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l-~~~~~d~il~~~~~~~~~~~~~~~~~~~~~~---- 603 (919)
T PRK11107 533 CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----L-PEAHYDILLLGLPVTFREPLTMLHERLAKAK---- 603 (919)
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----h-ccCCCCEEEecccCCCCCCHHHHHHHHHhhh----
Confidence 356789999999999999999999999999999999888 2 2457999999999999888776655543211
Q ss_pred cccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 786 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 786 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
....++|+++..........+.+.|+++|+.||+...+|...+....
T Consensus 604 ----------------~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 604 ----------------SMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred ----------------hcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 12356888899889999999999999999999999999999987654
No 146
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.17 E-value=7.7e-06 Score=66.17 Aligned_cols=62 Identities=40% Similarity=0.723 Sum_probs=53.2
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003018 259 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAK 320 (856)
Q Consensus 259 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l-~~~q~~~l~~i~~~~~~L~~lIndlLd~sk 320 (856)
.+.++++.++|||||||+++.++++.+.+... .+...++++.+..+++++..++++++++++
T Consensus 3 ~~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45679999999999999999999998876433 456678889999999999999999998874
No 147
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.12 E-value=2.7e-06 Score=95.35 Aligned_cols=91 Identities=26% Similarity=0.442 Sum_probs=80.4
Q ss_pred CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecC
Q 003018 734 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD 813 (856)
Q Consensus 734 ~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~ 813 (856)
++|..+..|.+|+..+. .+.+|.+++|++||+|||+++++++++.. .+++++|+.
T Consensus 13 ~~v~~a~~g~~~l~~~~-~~~~~~~lld~~m~~~~~~~~~~~lk~~~------------------------~~~v~~t~~ 67 (435)
T COG3706 13 KEVATAKKGLIALAILL-DHKPDYKLLDVMMPGMDGFELCRRLKAEP------------------------ATVVMVTAL 67 (435)
T ss_pred hhhhhccchHHHHHHHh-cCCCCeEEeecccCCcCchhHHHHHhcCC------------------------cceEEEEec
Confidence 45667999999999885 68999999999999999999999999742 238999999
Q ss_pred CCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 814 VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 814 ~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.......+.+++|++++++||++...+...+..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~ 103 (435)
T COG3706 68 DDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVR 103 (435)
T ss_pred CCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhcc
Confidence 999999999999999999999999999888776543
No 148
>COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.08 E-value=2.6e-05 Score=79.91 Aligned_cols=82 Identities=22% Similarity=0.389 Sum_probs=72.4
Q ss_pred EeecCCcceEEEeccCCChhchHHHHHHHhcCCceeeccccccccCcceEEEEEeeecCCCCCCCChHHHHHhhcceeee
Q 003018 54 IFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGG 133 (856)
Q Consensus 54 ~~~~~~~~~~~g~d~~s~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~ 133 (856)
.||.+.|..++|+|+..+|.-+.++.+||+.++.++|+|+.|+| ++-|++..+|++-.. +. -+.++|+|.+
T Consensus 119 ~yPl~~neaa~gLDYrk~pqQ~~s~~~A~~~k~tvvsGpVDL~Q-GgRgfi~rvPlf~gp--~~------~dRFwGvVs~ 189 (297)
T COG3452 119 VYPLPGNEAAIGLDYRKNPQQRQSTSRARRQKETVVSGPVDLVQ-GGRGFIGRVPLFMGP--PG------GDRFWGVVSG 189 (297)
T ss_pred EeecCCChhhcCcchhcCHHHHHHHHHHHhhcceEEecceeecc-CCceEEEEEeeeeCC--CC------CCccceEEEE
Confidence 78999999999999999999999999999999999999999997 556999999998642 11 2357899999
Q ss_pred ecchHHHHHHH
Q 003018 134 IFDIESLVEKL 144 (856)
Q Consensus 134 ~~~~~~l~~~~ 144 (856)
+||++.|.+..
T Consensus 190 V~dvDqL~~s~ 200 (297)
T COG3452 190 VFDVDQLYESV 200 (297)
T ss_pred EEEHHHHHHHh
Confidence 99999998875
No 149
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.05 E-value=3e-05 Score=85.32 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCC
Q 003018 374 GRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 453 (856)
Q Consensus 374 ~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (856)
..+.+++.|||.||+++.. ..|.|.+.. .
T Consensus 21 ~~~~~~l~eLi~Na~dA~a-~~I~i~~~~--~------------------------------------------------ 49 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA-TRIDVEIEE--G------------------------------------------------ 49 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC-CEEEEEEEe--C------------------------------------------------
Confidence 4678999999999999864 456555421 0
Q ss_pred CcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCC------CCCCCcccchHHHHHHHHHHcCCEEEEEEeC--CCce
Q 003018 454 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIP--NIGS 525 (856)
Q Consensus 454 ~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~------~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~--g~Gs 525 (856)
....|.|.|+|.||++++++++|++|++.+... ...+|--|.||+-...+ +.+.+.|.. +.+.
T Consensus 50 ----~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~ 120 (312)
T TIGR00585 50 ----GLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGL 120 (312)
T ss_pred ----CEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcc
Confidence 123599999999999999999999999865432 12345568888644333 378999875 4444
Q ss_pred EEEEE
Q 003018 526 TFTFT 530 (856)
Q Consensus 526 tF~~~ 530 (856)
.+.+.
T Consensus 121 ~~~~~ 125 (312)
T TIGR00585 121 AWQAL 125 (312)
T ss_pred eEEEE
Confidence 44443
No 150
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.83 E-value=4.2e-05 Score=84.02 Aligned_cols=115 Identities=21% Similarity=0.309 Sum_probs=80.3
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCC
Q 003018 372 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFK 451 (856)
Q Consensus 372 D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (856)
-..-|-|++.-|+.||+.+|+.-+|.=.+++.-+
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~---------------------------------------------- 66 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIE---------------------------------------------- 66 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEE----------------------------------------------
Confidence 4567999999999999999976544322221110
Q ss_pred CCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCC-CCC-CCCcccchHHHHHHHHHHcCCE-EEEEEeCCC-ceEE
Q 003018 452 SSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS-ISR-THGGTGIGLSISKYLVGRMKGE-IGFVSIPNI-GSTF 527 (856)
Q Consensus 452 ~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s-~~~-~~~GtGLGLsI~k~lv~~mgG~-I~v~S~~g~-GstF 527 (856)
..+...+.+.|+|||+|||++..+++|-.+.-.+.- ..+ ..|--|||.+-|=-..++.-|+ +.|.|..+. ++..
T Consensus 67 --~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~ 144 (538)
T COG1389 67 --RIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAY 144 (538)
T ss_pred --ecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceE
Confidence 011235789999999999999999999776543221 111 2245799999999999999887 778777654 7766
Q ss_pred EEEEEeC
Q 003018 528 TFTAVFG 534 (856)
Q Consensus 528 ~~~lp~~ 534 (856)
.+.+-..
T Consensus 145 ~~~l~id 151 (538)
T COG1389 145 EYELKID 151 (538)
T ss_pred EEEEEec
Confidence 6666543
No 151
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.75 E-value=0.00025 Score=66.75 Aligned_cols=93 Identities=19% Similarity=0.229 Sum_probs=66.2
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 003018 372 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 447 (856)
Q Consensus 372 D~~rl~qIl~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (856)
+...+.-++.-++.||++|+.. +.|.|.+...
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~-------------------------------------------- 63 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVD-------------------------------------------- 63 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEc--------------------------------------------
Confidence 4457889999999999999865 3555544321
Q ss_pred CCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEE
Q 003018 448 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527 (856)
Q Consensus 448 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF 527 (856)
...+.|.|.|+|.|+++.....-...= .......|+||.|.+++++.+ .+ + .+.|+++
T Consensus 64 ---------~~~l~i~v~D~G~~~d~~~~~~~~~~~-------~~~~~~~G~Gl~li~~l~D~~----~~-~-~~~gn~v 121 (125)
T PF13581_consen 64 ---------PDRLRISVRDNGPGFDPEQLPQPDPWE-------PDSLREGGRGLFLIRSLMDEV----DY-R-EDGGNTV 121 (125)
T ss_pred ---------CCEEEEEEEECCCCCChhhccCccccc-------CCCCCCCCcCHHHHHHHHcEE----EE-E-CCCeEEE
Confidence 124789999999999887554322110 023356799999999999875 55 4 7889998
Q ss_pred EEE
Q 003018 528 TFT 530 (856)
Q Consensus 528 ~~~ 530 (856)
+++
T Consensus 122 ~l~ 124 (125)
T PF13581_consen 122 TLR 124 (125)
T ss_pred EEE
Confidence 875
No 152
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=96.94 E-value=0.0076 Score=58.43 Aligned_cols=90 Identities=22% Similarity=0.281 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC-----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCC
Q 003018 372 DPGRFRQIITNLMGNSIKFTEK-----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 446 (856)
Q Consensus 372 D~~rl~qIl~NLl~NAiKfT~~-----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (856)
|-.+++-++.-++.||++|..+ |.|.|.+...+
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~------------------------------------------ 74 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDD------------------------------------------ 74 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcC------------------------------------------
Confidence 7789999999999999999865 77887775432
Q ss_pred CCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCc
Q 003018 447 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 524 (856)
Q Consensus 447 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~G 524 (856)
..+.+.|.|.|+||.+ .++.+.|-+.. ...-..-|+||.+.++++. ++.+++.++.+
T Consensus 75 -----------~~~~i~i~D~G~~~~~--~~~~~~~~~~~----~~~~~~~G~Gl~l~~~~~D----~~~~~~~~~~~ 131 (146)
T COG2172 75 -----------GKLEIRIWDQGPGIED--LEESLGPGDTT----AEGLQEGGLGLFLAKRLMD----EFSYERSEDGR 131 (146)
T ss_pred -----------CeEEEEEEeCCCCCCC--HHHhcCCCCCC----CcccccccccHHHHhhhhe----eEEEEeccCCc
Confidence 2478999999988754 44555555221 1111233899999998774 67888666553
No 153
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=96.92 E-value=0.0048 Score=45.94 Aligned_cols=54 Identities=37% Similarity=0.479 Sum_probs=48.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCC
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 765 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP 765 (856)
++++++|++..+..+...+...|+.+..+.++.++...+. .+.+|++++|+.+|
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLK-EEKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHH-hcCCCEEEEeccCC
Confidence 6999999999999999999999999999999999998774 45799999998764
No 154
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.82 E-value=0.0058 Score=73.42 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCC
Q 003018 375 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 454 (856)
Q Consensus 375 rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (856)
++..++..||.||+.+. ...|.|.+.- .
T Consensus 22 ~~~svvkElveNsiDAg-at~I~v~i~~--~------------------------------------------------- 49 (617)
T PRK00095 22 RPASVVKELVENALDAG-ATRIDIEIEE--G------------------------------------------------- 49 (617)
T ss_pred CHHHHHHHHHHHHHhCC-CCEEEEEEEe--C-------------------------------------------------
Confidence 67789999999999965 4566665521 0
Q ss_pred cCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCC------CCCCcccchHHHHHHHHHHcCCEEEEEEeC
Q 003018 455 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIP 521 (856)
Q Consensus 455 ~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~------~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~ 521 (856)
....|+|.|+|.||++++++.+|.++...+-+.- ...|--|.||+-...+ +.+.+.|..
T Consensus 50 ---g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~ 114 (617)
T PRK00095 50 ---GLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRT 114 (617)
T ss_pred ---CeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEec
Confidence 1246999999999999999999999876543221 2334456777644443 367777765
No 155
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=96.61 E-value=0.015 Score=52.87 Aligned_cols=110 Identities=16% Similarity=0.290 Sum_probs=79.3
Q ss_pred EEEeCCchhhhHHHHHHHHHhCc-EEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCce
Q 003018 564 ALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642 (856)
Q Consensus 564 ~lvvd~~~~~~~v~~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (856)
++++|+++..+......++..|+ .+..+++..+++..+.... ++++++|......+ ...++..+++.. ...+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~d~iiid~~~~~~~---~~~~~~~i~~~~--~~~~ 73 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP--PDLIIIDLELPDGD---GLELLEQIRQIN--PSIP 73 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST--ESEEEEESSSSSSB---HHHHHHHHHHHT--TTSE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC--ceEEEEEeeecccc---cccccccccccc--cccc
Confidence 58999999999999999999999 9999999999999886544 88999987655432 234556666554 3455
Q ss_pred EEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHH
Q 003018 643 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 681 (856)
Q Consensus 643 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l 681 (856)
+++++............ ..+...++.||++...+.+.+
T Consensus 74 ii~~t~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 74 IIVVTDEDDSDEVQEAL-RAGADDYLSKPFSPEELRAAI 111 (112)
T ss_dssp EEEEESSTSHHHHHHHH-HTTESEEEESSSSHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHhh
Confidence 55555443322222222 236778999999999887765
No 156
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=96.60 E-value=0.017 Score=53.17 Aligned_cols=106 Identities=19% Similarity=0.237 Sum_probs=74.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEE-EEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC-FMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~Dli-lmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
||||||||..-+.-+..+|.=.|+.+..+.+.+-..... ...++.+ ++...++ ...+.++.+-+.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~~~~~--~~~~~~~~v~~g~~~--~~~~~l~~l~~~---------- 66 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWSQADW--SSPWEACAVILGSCS--KLAELLKELLKW---------- 66 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHHHhhh--hcCCcEEEEEecCch--hHHHHHHHHHhh----------
Confidence 699999999999999999999999999888765422222 2345554 4444444 334455555442
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhh
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 847 (856)
.+++|++.+......... ..+-+-|..|++..+|...+++.
T Consensus 67 ------------~~~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 67 ------------APHIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred ------------CCCCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 468999999877665111 11566799999999999999874
No 157
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=96.50 E-value=0.025 Score=59.25 Aligned_cols=118 Identities=18% Similarity=0.232 Sum_probs=84.1
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
+++++||+++........+|+..|++|..+.+..+++..+... ++.+++|-.+...+ ...++..++.. ....+
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlviLD~~lP~~d---G~~~~~~iR~~-~~~~~ 73 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ---PDLVLLDLMLPDLD---GLELCRRLRAK-KGSGP 73 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC---CCEEEEECCCCCCC---HHHHHHHHHhh-cCCCC
Confidence 4789999999999999999999999999999999999887765 89999987665433 33456666655 33344
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
++++++...+.... -..-..|...++.||+....|.+-++..+..
T Consensus 74 PIi~Lta~~~~~d~-v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR 118 (229)
T COG0745 74 PIIVLTARDDEEDR-VLGLEAGADDYLTKPFSPRELLARLRALLRR 118 (229)
T ss_pred cEEEEECCCcHHHH-HHHHhCcCCeeeeCCCCHHHHHHHHHHHHCc
Confidence 34444332211111 1111235678999999999999988887754
No 158
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=96.10 E-value=0.005 Score=59.17 Aligned_cols=67 Identities=25% Similarity=0.323 Sum_probs=42.1
Q ss_pred EEEEEecCCCCChhhHhhhcCccccCCCC--CCCCCCcccch--HHHHHHHHHHcCCEEEEEEeCC-CceEEEEEEE
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTPFMQVGPS--ISRTHGGTGIG--LSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAV 532 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~pF~q~d~s--~~~~~~GtGLG--LsI~k~lv~~mgG~I~v~S~~g-~GstF~~~lp 532 (856)
.|.|.|+|.||+.+.+.++|......... .....|-.|+| +|+. .++..+.|.|... ...+++|...
T Consensus 35 ~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 35 YIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp EEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEEe
Confidence 58999999999999999977655433221 12245667888 4433 4678899999864 3445555554
No 159
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=95.79 E-value=0.018 Score=69.10 Aligned_cols=90 Identities=29% Similarity=0.448 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCC
Q 003018 372 DPGRFRQIITNLMGNSIKFTEKG---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 448 (856)
Q Consensus 372 D~~rl~qIl~NLl~NAiKfT~~G---~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (856)
+...+.+++.-||.||+.....| .|.|.++.
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~---------------------------------------------- 67 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA---------------------------------------------- 67 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEeC----------------------------------------------
Confidence 67889999999999999975444 45554421
Q ss_pred CCCCCCcCceeEEEEEEecCCCCChhhHhh--------hcCccccCC---CCCCCCCCc-ccchHHHHHHHHHHcCCEEE
Q 003018 449 PFKSSSADLINLIVSVEDTGQGIPLEAQSR--------IFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGRMKGEIG 516 (856)
Q Consensus 449 ~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~--------iF~pF~q~d---~s~~~~~~G-tGLGLsI~k~lv~~mgG~I~ 516 (856)
+ -.|+|.|+|.|||.+..+. +|..+.... ....+..+| -|.||+.+..+.+. +.
T Consensus 68 -------d---g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~----l~ 133 (631)
T PRK05559 68 -------D---GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSR----LE 133 (631)
T ss_pred -------C---CcEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhheee----EE
Confidence 0 1489999999999998888 887743221 111112234 79999998888654 45
Q ss_pred EEEeC
Q 003018 517 FVSIP 521 (856)
Q Consensus 517 v~S~~ 521 (856)
|++..
T Consensus 134 V~s~r 138 (631)
T PRK05559 134 VEVKR 138 (631)
T ss_pred EEEEe
Confidence 55543
No 160
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=95.15 E-value=0.14 Score=58.56 Aligned_cols=177 Identities=14% Similarity=0.183 Sum_probs=110.6
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.++|+|||++.-+.+....|...|+.|..+.+..+++..+... .+++++.|..+...+ . ..++..+++.. ...
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp~~~--G-l~ll~~i~~~~--~~~ 77 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMPGMD--G-LELLKEIKSRD--PDL 77 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCc--h-HHHHHHHHhhC--CCC
Confidence 4699999999999999999999999999999999999999877 588888887655332 2 23455555543 222
Q ss_pred eEEEEeccCC-ccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCC----------CCC-CC-cchhh----
Q 003018 642 KLFLLANSIS-SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR----------NWE-LP-SMSLR---- 704 (856)
Q Consensus 642 ~~~ll~~~~~-~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~----------~~~-~~-~~~~~---- 704 (856)
++++++...+ ....+..+. +...++.||+....+...+.+++......... ... .. +...+
T Consensus 78 pVI~~Tg~g~i~~AV~A~k~--GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~ 155 (464)
T COG2204 78 PVIVMTGHGDIDTAVEALRL--GAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRR 155 (464)
T ss_pred CEEEEeCCCCHHHHHHHHhc--CcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCHHHHHHHH
Confidence 3333332222 111111222 45578999999999999999888642211000 000 00 00000
Q ss_pred ----hcCCCCeEEEEcCCHHHHHHHHHHHhhcCC-------EEEEEcCHHHHHH
Q 003018 705 ----HLLLGRKILIVDDNNVNLKVAAAGLKRYGA-------AVVCVERGKKATE 747 (856)
Q Consensus 705 ----~~~~~~~ILvVdDn~~n~~~l~~~L~~~g~-------~v~~a~~g~eA~~ 747 (856)
-......|||.-..-.=.+++..++.+.+- .+-|+.=..+.++
T Consensus 156 ~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~E 209 (464)
T COG2204 156 LIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLE 209 (464)
T ss_pred HHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHH
Confidence 012334688888887777888888876542 3445554555444
No 161
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=94.93 E-value=0.25 Score=62.82 Aligned_cols=121 Identities=15% Similarity=0.146 Sum_probs=83.7
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCC--
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC-- 637 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~-- 637 (856)
.++++|++|+++..+......|+.+|+++..+.+..+++..+.. ..++++++|..+...+. ......++....
T Consensus 689 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlil~D~~mp~~~G---~~~~~~ir~~~~~~ 763 (921)
T PRK15347 689 WQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ--HRFDLVLMDIRMPGLDG---LETTQLWRDDPNNL 763 (921)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCH---HHHHHHHHhchhhc
Confidence 45789999999999999999999999999999999999988754 45789999887665442 223444444321
Q ss_pred CCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 638 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 638 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
....++++++.......... ....+...++.||+....+...+.....
T Consensus 764 ~~~~pii~lt~~~~~~~~~~-~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 764 DPDCMIVALTANAAPEEIHR-CKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred CCCCcEEEEeCCCCHHHHHH-HHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 12233444433222211111 1223677899999999999998877653
No 162
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=94.69 E-value=0.36 Score=60.20 Aligned_cols=194 Identities=12% Similarity=0.129 Sum_probs=114.1
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.+.+++++|+++..+......|+.+|+.+..+.+..+++..+.. ..++++++|..+...+ .......++......
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~Dlvl~D~~mp~~~---G~e~~~~ir~~~~~~ 598 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP--DEYDLVLLDIQLPDMT---GLDIARELRERYPRE 598 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEcCCCCCCC---HHHHHHHHHhccccC
Confidence 46789999999999999999999999999999999999988763 4578999987765443 223445555443222
Q ss_pred C-ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEcCC
Q 003018 640 Q-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718 (856)
Q Consensus 640 ~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn 718 (856)
. +.+++++...... ... ....+...++.||+....+...+.+.+............ .. ... ..++
T Consensus 599 ~~~~ii~~ta~~~~~-~~~-~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~~~~~~~~~-~~------~~~-----~~~~ 664 (779)
T PRK11091 599 DLPPLVALTANVLKD-KKE-YLDAGMDDVLSKPLSVPALTAMIKKFWDTQDDEESTVTT-EE------SSK-----ANEA 664 (779)
T ss_pred CCCcEEEEECCchHh-HHH-HHHCCCCEEEECCCCHHHHHHHHHHHhcccccccccccc-cc------ccc-----cccc
Confidence 2 2444443332211 111 112366789999999999999998887532211110000 00 000 0344
Q ss_pred HHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHH
Q 003018 719 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777 (856)
Q Consensus 719 ~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR 777 (856)
..+...+..++...|... ..+++..+....+-.+-.++..++..|.-++.+...
T Consensus 665 ~l~~~~l~~~~~~~g~~~-----~~~~l~~~~~~~~~~~~~l~~~l~~~d~~~~~~~ah 718 (779)
T PRK11091 665 LLDIPMLEQYVELVGPKL-----ITDSLAVFEKMMPGYLSVLDSNLTARDQKGIVEEAH 718 (779)
T ss_pred ccCHHHHHHHHHhcCHHH-----HHHHHHHHHHhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 556666777776665421 234444442111112222344566777766544433
No 163
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=94.67 E-value=0.062 Score=64.64 Aligned_cols=89 Identities=28% Similarity=0.444 Sum_probs=55.7
Q ss_pred CceEee--cHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCcccc
Q 003018 366 PETLIG--DPGRFRQIITNLMGNSIKFTEKG---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 440 (856)
Q Consensus 366 p~~v~~--D~~rl~qIl~NLl~NAiKfT~~G---~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (856)
|.+.+| |+.-|.+++.-||.||+.-...| .|.|.++-
T Consensus 26 PgMYiGs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~-------------------------------------- 67 (638)
T PRK05644 26 PGMYIGSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINE-------------------------------------- 67 (638)
T ss_pred CCceECCCChhhHHhhhHHhhhcccccccCCCCCEEEEEEeC--------------------------------------
Confidence 344444 67789999999999999844344 56555421
Q ss_pred ccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHh--------hhcCccccC---CCCCCC-CCCcccchHHHHHHHH
Q 003018 441 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISR-THGGTGIGLSISKYLV 508 (856)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~--------~iF~pF~q~---d~s~~~-~~~GtGLGLsI~k~lv 508 (856)
+. .|+|.|+|.|||.+..+ -||.-.... |....+ ..|--|.||+.+..+.
T Consensus 68 ---------------~g---~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS 129 (638)
T PRK05644 68 ---------------DG---SITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALS 129 (638)
T ss_pred ---------------CC---cEEEEEeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhhhee
Confidence 00 48999999999997433 244333111 111122 2234799999988887
Q ss_pred HH
Q 003018 509 GR 510 (856)
Q Consensus 509 ~~ 510 (856)
+.
T Consensus 130 ~~ 131 (638)
T PRK05644 130 TW 131 (638)
T ss_pred ce
Confidence 63
No 164
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=94.57 E-value=0.045 Score=65.62 Aligned_cols=50 Identities=28% Similarity=0.448 Sum_probs=33.7
Q ss_pred EEEEEecCCCCChhh--------Hhhhc-CccccC--CCCCCCCCCc-ccchHHHHHHHHHH
Q 003018 461 IVSVEDTGQGIPLEA--------QSRIF-TPFMQV--GPSISRTHGG-TGIGLSISKYLVGR 510 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~--------~~~iF-~pF~q~--d~s~~~~~~G-tGLGLsI~k~lv~~ 510 (856)
.|+|.|+|.|||.+. .+-+| .+.... +....+..+| .|.||+.+..+.+.
T Consensus 63 ~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~ 124 (625)
T TIGR01055 63 SIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKR 124 (625)
T ss_pred eEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCe
Confidence 489999999999988 77777 332211 1111122334 79999999998874
No 165
>PRK14083 HSP90 family protein; Provisional
Probab=94.56 E-value=0.022 Score=67.64 Aligned_cols=57 Identities=26% Similarity=0.269 Sum_probs=34.3
Q ss_pred EEEEEecCCCCChhhHhhhcCccccCC-------CCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeC
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTPFMQVG-------PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 521 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~pF~q~d-------~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~ 521 (856)
.|+|+|||+||+.+...+.|--..... .......|..|+|..=|-.+ +-++.|.|..
T Consensus 64 ~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~v----ad~v~V~Tr~ 127 (601)
T PRK14083 64 TLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFLV----ADEIVVVSRS 127 (601)
T ss_pred EEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEEe----cCEEEEEecc
Confidence 589999999999999888763222110 01112346788887654332 3345555544
No 166
>PLN03029 type-a response regulator protein; Provisional
Probab=94.56 E-value=0.26 Score=51.38 Aligned_cols=120 Identities=14% Similarity=0.125 Sum_probs=78.0
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCC------------------CcceEEEeeccccccC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS------------------KIINMILVEQEVWEKD 621 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~------------------~~~~~~l~d~~~~~~~ 621 (856)
...++|+||+++..+......|+.+|+.+..+.+..+++..+.... ..++++++|..+...+
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 3578999999999999999999999999999999999998875321 2467888887665443
Q ss_pred CchhHHHHHHHhhcCCCCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHH
Q 003018 622 TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 683 (856)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~ 683 (856)
. ...+..++.........++++............ ...+...++.||+....+......
T Consensus 87 G---~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~a-l~~Ga~dyl~KP~~~~~L~~l~~~ 144 (222)
T PLN03029 87 G---YDLLKKIKESSSLRNIPVVIMSSENVPSRITRC-LEEGAEEFFLKPVQLSDLNRLKPH 144 (222)
T ss_pred H---HHHHHHHHhccccCCCcEEEEeCCCCHHHHHHH-HHhCchheEECCCCHHHHHHHHHH
Confidence 2 334455554332223334444332221111111 123566899999998887655443
No 167
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=94.41 E-value=1 Score=42.24 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=72.7
Q ss_pred cCCHHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHHHHhhccccccccccc
Q 003018 716 DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMDG--FEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 716 dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eA~~~l~~~~~~DlilmDi~MP~mdG--~e~~~~IR~~~~~~~~~~~~g 790 (856)
|.+..=...+..+|+..||+|.... ..++.++.+. ...+|+|.+-..|+..-. -++++++|+.
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~-~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~----------- 77 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAI-QEDVDVIGLSSLSGGHMTLFPEVIELLREL----------- 77 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcccchhhHHHHHHHHHHHHhc-----------
Confidence 6666677888999999999998754 3556666664 467999999887753322 2233344431
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHh
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 845 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 845 (856)
....++ +++-+....+..++..++|+|+|+..--+.++...-++
T Consensus 78 ----------~~~~i~-i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 78 ----------GAGDIL-VVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred ----------CCCCCE-EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 011333 44555556777888999999999998888887765543
No 168
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=94.10 E-value=0.29 Score=62.57 Aligned_cols=121 Identities=14% Similarity=0.237 Sum_probs=85.7
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.+.+++++|+++..+.+....|+.+|+.+..+.+..+++..+.. ..++++++|..+...+ .......++......
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvl~D~~mp~~~---g~~~~~~ir~~~~~~ 775 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ--HAFDLALLDINLPDGD---GVTLLQQLRAIYGAK 775 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC--CCCCEEEECCCCCCCC---HHHHHHHHHhCcccc
Confidence 34589999999999999999999999999999999999998865 5689999988765543 233445555533322
Q ss_pred C-ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 640 Q-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 640 ~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
. .++++++.......... ....++..++.||++...+...+...+.
T Consensus 776 ~~~pii~lta~~~~~~~~~-~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 776 NEVKFIAFSAHVFNEDVAQ-YLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred CCCeEEEEECCCCHHHHHH-HHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 2 34444433222211111 1223677899999999999999988774
No 169
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=93.93 E-value=1.9 Score=41.30 Aligned_cols=118 Identities=11% Similarity=0.110 Sum_probs=84.5
Q ss_pred CCeEEEE----cCCHHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCC--CHHHHHHHHHhh
Q 003018 709 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM--DGFEATKIIREM 779 (856)
Q Consensus 709 ~~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eA~~~l~~~~~~DlilmDi~MP~m--dG~e~~~~IR~~ 779 (856)
+++||+. |.+..-..++..+|+..||+|+... ..++-++.+. .+.+|+|.+-..|... +--++.+++|+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~-~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAI-ETDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 4678888 8999999999999999999999754 3455566654 5689999999888743 223344445432
Q ss_pred cccccccccccccchhhhccCCCCCCcEEEEecCC------CHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 780 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV------IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 780 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~------~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
. ..+++|+ +-+.. ..++..++.+.|++......-+.++...-++++++
T Consensus 82 ~---------------------~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 82 G---------------------LGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred C---------------------CCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 1 1244444 33322 34566788899999999999999999998888765
No 170
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=93.91 E-value=0.1 Score=63.28 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC---eEEEEE
Q 003018 372 DPGRFRQIITNLMGNSIKFTEKG---HIFVTV 400 (856)
Q Consensus 372 D~~rl~qIl~NLl~NAiKfT~~G---~I~v~v 400 (856)
|+.-|.+++.-||.||+.-...| .|.|.+
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i 58 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTI 58 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEE
Confidence 56779999999999999833333 555554
No 171
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=93.46 E-value=1 Score=41.71 Aligned_cols=118 Identities=20% Similarity=0.285 Sum_probs=76.7
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHH-HHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL-QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
.+.+++++|+++..+......++.+|..+..+.+.. +++..+.... .++++++|..+...+ .......+++. ..
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~---G~~~~~~l~~~-~~ 78 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMD---GIELLRRLRAR-GP 78 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCC---HHHHHHHHHhC-CC
Confidence 467899999999999999999999999999999995 8888876542 467788888776444 33445555554 11
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHH-HHHHHHHH
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM-LAASLQRA 684 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~-l~~~l~~~ 684 (856)
..+ ++.+............ ...+...++.||+.... +...+.+.
T Consensus 79 ~~p-vv~~t~~~~~~~~~~~-~~~g~~~~l~kP~~~~~~l~~~i~~~ 123 (130)
T COG0784 79 NIP-VILLTAYADEADRERA-LAAGADDYLTKPIFLEEELLAALRRL 123 (130)
T ss_pred CCC-EEEEEcCcCHHHHHHH-HHcCCCeEEcCCCCcHHHHHHHHHHH
Confidence 223 4333332222111111 11245568999977665 55555543
No 172
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=93.27 E-value=0.49 Score=60.04 Aligned_cols=119 Identities=20% Similarity=0.310 Sum_probs=84.0
Q ss_pred cCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 559 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 559 ~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
..+.++|++|+++..+.+....|+.+|+.+..+.++.+++..+.. ..++++++|..+...+. ......+++..
T Consensus 799 ~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~--~~~DlVl~D~~mP~mdG---~el~~~ir~~~-- 871 (924)
T PRK10841 799 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLTDVNMPNMDG---YRLTQRLRQLG-- 871 (924)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCH---HHHHHHHHhcC--
Confidence 357899999999999999999999999999999999999988765 45889999987765442 23344455432
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
...++++++......... .....+...++.||+....+...+.+..
T Consensus 872 ~~~pII~lTa~~~~~~~~-~~~~aG~d~~L~KPv~~~~L~~~L~~~~ 917 (924)
T PRK10841 872 LTLPVIGVTANALAEEKQ-RCLEAGMDSCLSKPVTLDVLKQTLTVYA 917 (924)
T ss_pred CCCCEEEEECCCCHHHHH-HHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 223344443322211111 1122367789999999999998887654
No 173
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=92.64 E-value=0.086 Score=63.60 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.7
Q ss_pred EEEEEecCCCCChhhHhhhc
Q 003018 461 IVSVEDTGQGIPLEAQSRIF 480 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF 480 (856)
.+.|.|||+||+++++.+-|
T Consensus 73 ~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 73 TLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred EEEEEECCCCCCHHHHHHHh
Confidence 58999999999998866554
No 174
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=92.63 E-value=0.59 Score=59.38 Aligned_cols=120 Identities=17% Similarity=0.259 Sum_probs=82.9
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.+.+++++|+++..+......|+.+|+.+..+.+..+++..+.. ...++++++|..+...++ ......++... .
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~~Dlvl~D~~mp~~~G---~~~~~~lr~~~--~ 753 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQN-SEPFAAALVDFDLPDYDG---ITLARQLAQQY--P 753 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHc-CCCCCEEEEeCCCCCCCH---HHHHHHHHhhC--C
Confidence 46789999999999999999999999999999999999987753 245899999987665442 22344444421 1
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..+++++............ ...+...++.||+....+...+.+.+.
T Consensus 754 ~~~ii~~t~~~~~~~~~~~-~~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 754 SLVLIGFSAHVIDETLRQR-TSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred CCCEEEEeCCCchhhHHHH-HhcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 2333443332221111111 122456789999999999999988774
No 175
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=92.62 E-value=0.63 Score=43.21 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=70.7
Q ss_pred HHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC--CCHHHHHHHHHhhcccccccccccccchhhhccC
Q 003018 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE--MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENV 800 (856)
Q Consensus 723 ~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~--mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~ 800 (856)
..+...|++.|++|+.+.+-.+|+..+.....++.|++|.. ++ ....++++.||+.
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~--------------------- 64 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRER--------------------- 64 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHh---------------------
Confidence 45677888899999999999999999976678899999986 11 1235677788764
Q ss_pred CCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHH
Q 003018 801 SNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 840 (856)
Q Consensus 801 ~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L 840 (856)
+..+||.+++.....+..-...-.-+++|+-..-+-.++
T Consensus 65 -~~~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~f 103 (115)
T PF03709_consen 65 -NFGIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEF 103 (115)
T ss_dssp -STT-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHH
T ss_pred -CCCCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHH
Confidence 457999999987655555555666788999887654443
No 176
>PRK05218 heat shock protein 90; Provisional
Probab=92.30 E-value=0.44 Score=57.33 Aligned_cols=57 Identities=16% Similarity=0.262 Sum_probs=37.6
Q ss_pred EEEEEecCCCCChhhHhhhcCccccCC------------CCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeC
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTPFMQVG------------PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 521 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~pF~q~d------------~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~ 521 (856)
.|.|+|||+||+.+++..-|...-..+ .+...-.|-.|+|+.=| =+.+-++.|.|..
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~----f~va~~v~V~Sr~ 142 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSA----FMVADKVTVITRS 142 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhh----hhccCEEEEEEcC
Confidence 489999999999999988764433211 01122346688998532 2335678998876
No 177
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=92.22 E-value=11 Score=42.11 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=63.9
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHh-CcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~-g~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
..++|++|+++..+......|... |+.+. .+.+..+++..+.. ..++++++|..+...+. ..++..++....
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~--~~~DlVllD~~mp~~dg---le~l~~i~~~~~- 76 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK--LNPDVITLDVEMPVMDG---LDALEKIMRLRP- 76 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh--hCCCEEEEeCCCCCCCh---HHHHHHHHHhCC-
Confidence 358999999999999999999876 88877 78899998887654 34678888876554332 233444444332
Q ss_pred CCceEEEEeccCCcc-ccCCCCCCCCCCceeccCCc
Q 003018 639 FQSKLFLLANSISSS-RANTSTDGVSIPSVIMKPLR 673 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~-~~~~~~~~~~~~~~~~kp~~ 673 (856)
..++++....... ......-..+...++.||+.
T Consensus 77 --~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 77 --TPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred --CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 2333332211110 10000112245678999984
No 178
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=91.78 E-value=2.6 Score=53.04 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=80.3
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
++.+++++|+++.........|..+|+.+..+.+..+++..+......+++++++ +... ........++... .
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll~--~~~~---~g~~l~~~l~~~~--~ 768 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLVD--DRLL---DEEQAAAALHAAA--P 768 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEEC--CCCC---CHHHHHHHHHhhC--C
Confidence 5678999999999999999999999999999999999999887665567888772 2111 1222334443321 2
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
...++++............. ..+ ..++.||++...+...+...+..
T Consensus 769 ~ipIIvls~~~~~~~~~~~~-~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 769 TLPIILGGNSKTMALSPDLL-ASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred CCCEEEEeCCCchhhhhhHh-hcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 23344443332222221111 224 67899999999999999888753
No 179
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=91.73 E-value=8 Score=42.96 Aligned_cols=116 Identities=15% Similarity=0.194 Sum_probs=69.5
Q ss_pred cEEEEeCCchhhhHHHHHHH-HHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHI-QRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l-~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
+++|++|+++..+......| +..|+.+. .+.+..+++..+.. ..++++++|..+...+. ..++..++...
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~--~~pDlVllD~~mp~~~G---~e~l~~l~~~~--- 72 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA--QPPDVILMDLEMPRMDG---VEATRRIMAER--- 72 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc--cCCCEEEEcCCCCCCCH---HHHHHHHHHHC---
Confidence 37899999999998888888 57788876 68899999888754 45788888876654332 22344444321
Q ss_pred CceEEEEeccCCccccC-CCCCCCCCCceeccCC---------chHHHHHHHHHHh
Q 003018 640 QSKLFLLANSISSSRAN-TSTDGVSIPSVIMKPL---------RSSMLAASLQRAM 685 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~-~~~~~~~~~~~~~kp~---------~~~~l~~~l~~~~ 685 (856)
...++++.......... ...-..+...++.||+ ....+...++...
T Consensus 73 ~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 73 PCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred CCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 22333333322111100 0011125567899999 4445555555444
No 180
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=91.44 E-value=2 Score=43.78 Aligned_cols=119 Identities=17% Similarity=0.205 Sum_probs=78.0
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......|...|+.+..+.+..+++..+.. ..++.+++|......+ .......++........
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~vi~d~~~~~~~---g~~~~~~l~~~~~~~~~ 77 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE--RGPDLILLDWMLPGTS---GIELCRRLRRRPETRAI 77 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh--cCCCEEEEECCCCCCc---HHHHHHHHHccccCCCC
Confidence 578999999999998999999999999999999988887654 3468888887654332 22344455443222233
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
+++++........... .-..+...++.||+....+...+...+.
T Consensus 78 ~ii~ls~~~~~~~~~~-~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 78 PIIMLTARGEEEDRVR-GLETGADDYITKPFSPRELLARIKAVLR 121 (226)
T ss_pred CEEEEecCCCHHHHHH-HHhcCcceEEeCCCCHHHHHHHHHHHhc
Confidence 4444433222111111 1122556799999999999888887764
No 181
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=91.31 E-value=2.1 Score=44.15 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=78.1
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
++++++|+++.........|...|+.+..+.+..+++..+.. ..++++++|......+ .......++........
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~l~~~~~~~~~ 77 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGS---GIQFIKHLKRESMTRDI 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCC---HHHHHHHHHhccccCCC
Confidence 578999999999998999999999999999999998887653 3468888887654332 22344455443222233
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
++++++........... -..+...++.||+....+...+...+.
T Consensus 78 pvi~ls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 78 PVVMLTARGEEEDRVRG-LETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred CEEEEECCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 34444332221111111 122566899999999999888877664
No 182
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=91.19 E-value=2.1 Score=39.65 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCC--CHHHHHHHHHhhccccccccccc
Q 003018 716 DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM--DGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 716 dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eA~~~l~~~~~~DlilmDi~MP~m--dG~e~~~~IR~~~~~~~~~~~~g 790 (856)
|.+..-..++..+|+..||+|.... ..++.++.+. ...||+|.+-..|... +..++.+.+|+.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~-~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~----------- 77 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK-EEDADAIGLSGLLTTHMTLMKEVIEELKEA----------- 77 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHHc-----------
Confidence 5666777899999999999997643 3455556553 5689999998875542 334555566552
Q ss_pred ccchhhhccCCCC-CCcEEEEecCCCHHhHHHHHHcCCCeEEeCC
Q 003018 791 EVSIEAYENVSNF-HVPILAMTADVIQATYEECLRSGMDGYVSKP 834 (856)
Q Consensus 791 ~~~~~~~~~~~~~-~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP 834 (856)
.+ .++ |++-+.......+.+.+.|+|.|+...
T Consensus 78 -----------~~~~~~-i~vGG~~~~~~~~~~~~~G~D~~~~~~ 110 (119)
T cd02067 78 -----------GLDDIP-VLVGGAIVTRDFKFLKEIGVDAYFGPA 110 (119)
T ss_pred -----------CCCCCe-EEEECCCCChhHHHHHHcCCeEEECCH
Confidence 12 344 455665555555678899998887643
No 183
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.97 E-value=0.55 Score=44.31 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEEEEee
Q 003018 377 RQIITNLMGNSIKFTEKGHIFVTVYLVE 404 (856)
Q Consensus 377 ~qIl~NLl~NAiKfT~~G~I~v~v~~~~ 404 (856)
.-+...|+.||+||...|.|.|..++..
T Consensus 65 gYl~NELiENAVKfra~geIvieasl~s 92 (184)
T COG5381 65 GYLANELIENAVKFRATGEIVIEASLYS 92 (184)
T ss_pred HHHHHHHHHhhhcccCCCcEEEEEEecc
Confidence 3466789999999999999999887643
No 184
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=90.83 E-value=1.8 Score=39.66 Aligned_cols=117 Identities=17% Similarity=0.299 Sum_probs=82.8
Q ss_pred cCCCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHH--HHHHhhcccc
Q 003018 706 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT--KIIREMEHNF 783 (856)
Q Consensus 706 ~~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~--~~IR~~~~~~ 783 (856)
.+.|++++.||-|..-.......|...|.+|+.-..-. .+ ..+.||.+|+.+-.+-..-...- +-.|..
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~----~l-p~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al---- 78 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFS----AL-PPAHYDMMLLGVAVTFRENLTMQHERLAKAL---- 78 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEeccccc----cc-ChhhhceeeecccccccCCchHHHHHHHHHH----
Confidence 46789999999999999999999999999998754433 33 45679999999877654443321 111211
Q ss_pred cccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHH-HHhhhCC
Q 003018 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR-EVSRFFP 849 (856)
Q Consensus 784 ~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~-~l~~~~~ 849 (856)
+..+--|+++-..+ ....++..+-|+-+.|.||++...|.. .+..+-.
T Consensus 79 -----------------~mtd~vilalPs~~-qv~AeqLkQ~g~~~CllKPls~~rLlptllae~~~ 127 (140)
T COG4999 79 -----------------SMTDFVILALPSHA-QVNAEQLKQDGAGACLLKPLSSTRLLPTLLAEFCH 127 (140)
T ss_pred -----------------hhhcceEEecCcHH-HHhHHHHhhcchHhHhhCcchhhhhHHHHHHHhhh
Confidence 11234567776543 445677888999999999999999988 5555543
No 185
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=90.62 E-value=1.4 Score=51.33 Aligned_cols=155 Identities=12% Similarity=0.057 Sum_probs=93.9
Q ss_pred EEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCceE
Q 003018 564 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 643 (856)
Q Consensus 564 ~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (856)
++++|+++..+......+...|+.+..+.+..+++..+.. ..++++++|..+...+. ...+..++... ....+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlVllD~~~p~~~g---~~ll~~l~~~~--~~~~v 73 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR--GQPDLLITDVRMPGEDG---LDLLPQIKKRH--PQLPV 73 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCCH---HHHHHHHHHhC--CCCeE
Confidence 4789999998888999999999999999999999887754 35788888876644332 23344444321 12344
Q ss_pred EEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEcCCHHHHH
Q 003018 644 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 723 (856)
Q Consensus 644 ~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~ 723 (856)
+++............ ...+...++.||+....+...+...+......... . ......+....++.+++.++.
T Consensus 74 Ivlt~~~~~~~~~~a-~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~--~-----~~~~~~~~~~~lig~s~~~~~ 145 (463)
T TIGR01818 74 IVMTAHSDLDTAVAA-YQRGAFEYLPKPFDLDEAVTLVERALAHAQEQVAL--P-----ADAGEAEDSAELIGEAPAMQE 145 (463)
T ss_pred EEEeCCCCHHHHHHH-HHcCcceeecCCCCHHHHHHHHHHHHHHHHHHHhh--h-----hhhhccccccceeecCHHHHH
Confidence 444332221111111 12256678999999999988887765421110000 0 000001122457888998888
Q ss_pred HHHHHHhhcC
Q 003018 724 VAAAGLKRYG 733 (856)
Q Consensus 724 ~l~~~L~~~g 733 (856)
++..+.+..+
T Consensus 146 v~~~i~~~a~ 155 (463)
T TIGR01818 146 VFRAIGRLSR 155 (463)
T ss_pred HHHHHHHHhC
Confidence 8877765443
No 186
>PTZ00130 heat shock protein 90; Provisional
Probab=90.61 E-value=0.32 Score=59.15 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=29.0
Q ss_pred EEEEEecCCCCChhhHhhhcCc--------ccc---CCCCCCCCCCcccchHHHHHHHH
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTP--------FMQ---VGPSISRTHGGTGIGLSISKYLV 508 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~p--------F~q---~d~s~~~~~~GtGLGLsI~k~lv 508 (856)
.|+|+|||+||+.+.+..-+-. |.+ .......-.|-.|+|++-|-.+.
T Consensus 136 tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVA 194 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVA 194 (814)
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeec
Confidence 5889999999999986543311 211 00111234567899988664443
No 187
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=90.13 E-value=2.8 Score=43.01 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=76.5
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCce
Q 003018 563 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (856)
+++++|+++.........|...|+.+..+.+..+++..+.. .++.+++|..+...+ .......++.... .+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~---g~~~~~~l~~~~~---~~ 73 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKN---GIDTLKELRQTHQ---TP 73 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCc---HHHHHHHHHhcCC---Cc
Confidence 68999999999999999999999999999999998887642 478888887654332 2234445544322 33
Q ss_pred EEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 643 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 643 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
+++++.......... .-..+...++.||+....+...+...+.
T Consensus 74 ii~lt~~~~~~~~~~-~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 74 VIMLTARGSELDRVL-GLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred EEEEECCCCHHHHHH-HHHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 444433222111111 1123566899999999999988887764
No 188
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=89.89 E-value=3.5 Score=42.78 Aligned_cols=119 Identities=14% Similarity=0.150 Sum_probs=78.8
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..+++++|+++..+......|...|+.+..+.+..+++..+.. ..++++++|......+ .......++... ..
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~~--~~ 77 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR--ESFHLMVLDLMLPGED---GLSICRRLRSQN--NP 77 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CC
Confidence 4679999999999999999999999999999999888877654 4568888886654332 223344444422 22
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
..+++++.......... .-..+...++.||+....+.+.+...+..
T Consensus 78 ~pii~ls~~~~~~~~~~-~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 78 TPIIMLTAKGEEVDRIV-GLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred CCEEEEECCCcHHHHHH-HHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 33444433222111111 11235668999999999999988877653
No 189
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=89.76 E-value=1.5 Score=48.06 Aligned_cols=117 Identities=16% Similarity=0.236 Sum_probs=78.9
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.-..+++|||.+.....++..|+..|+++..+.++..++...... +++.++.|..+..+++ ..++++++......
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~--~~dlvllD~~mp~mdg---~ev~~~lk~~~p~t 87 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEE--PPDLVLLDVRMPEMDG---AEVLNKLKAMSPST 87 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhccc--CCceEEeeccCCCccH---HHHHHHHHhcCCcc
Confidence 346799999999999999999999999999999999888776543 3888888887665543 44566777633332
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHH
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 681 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l 681 (856)
....+++.+.....+.....-..++..++.||++...+....
T Consensus 88 ~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv 129 (360)
T COG3437 88 RRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARV 129 (360)
T ss_pred cccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHH
Confidence 222233333333222111111146778999999977766544
No 190
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=89.42 E-value=3.5 Score=42.32 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=76.5
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
++++++|+++..+......|...|+.+..+.+..+++..+.. ..++.+++|......+ .......++... ...
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~~~~~~---g~~~~~~lr~~~--~~~ 73 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT--GDYDLIILDIMLPDVN---GWDIVRMLRSAN--KGM 73 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcC--CCC
Confidence 368999999999999999999999999999999888876643 3467888876654332 223344444422 223
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
+++++............ -..+...++.||+....+...+...+.
T Consensus 74 pii~ls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 74 PILLLTALGTIEHRVKG-LELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred CEEEEEcCCCHHHHHHH-HhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 34444332221111111 122566799999999999988887764
No 191
>PRK11173 two-component response regulator; Provisional
Probab=89.21 E-value=3.6 Score=42.69 Aligned_cols=116 Identities=15% Similarity=0.201 Sum_probs=77.1
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...+...++.. . ..
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~---g~~~~~~lr~~--~-~~ 75 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN--DINLVIMDINLPGKN---GLLLARELREQ--A-NV 75 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCC---HHHHHHHHhcC--C-CC
Confidence 5799999999999999999999999999999999998877543 578888887654322 22344445442 1 22
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.+++++.......... .-..+...++.||+....+...+...+.
T Consensus 76 pii~lt~~~~~~~~~~-~~~~ga~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 76 ALMFLTGRDNEVDKIL-GLEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred CEEEEECCCCHHHHHH-HHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 3333433222111111 1123566899999999998877776654
No 192
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=89.19 E-value=0.45 Score=57.05 Aligned_cols=49 Identities=35% Similarity=0.522 Sum_probs=29.0
Q ss_pred EEEEEecCCCCChhhHh--------hhcCccccC---CCCCCCCC-CcccchHHHHHHHHH
Q 003018 461 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTH-GGTGIGLSISKYLVG 509 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~--------~iF~pF~q~---d~s~~~~~-~GtGLGLsI~k~lv~ 509 (856)
.|+|.|+|.|||.+..+ -+|...... +....+.. |--|.||+.+..+.+
T Consensus 34 ~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS~ 94 (594)
T smart00433 34 SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALST 94 (594)
T ss_pred eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcccchHHHHHHhcC
Confidence 48999999999976533 234333211 11111122 336999998887743
No 193
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=88.62 E-value=2 Score=47.51 Aligned_cols=85 Identities=9% Similarity=0.015 Sum_probs=58.7
Q ss_pred CCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEec
Q 003018 733 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA 812 (856)
Q Consensus 733 g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa 812 (856)
|..++.+.+..++-..+ ..-.+|++|..| . ..-++... ..+..+++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-----~--~~~~~~~~---------------------p~~~~vv~v~~ 49 (322)
T TIGR03815 1 GVELDVAPDPEAARRAW---ARAPLVLVDADM-----A--EACAAAGL---------------------PRRRRVVLVGG 49 (322)
T ss_pred CCceEEccCchhhhhcc---ccCCeEEECchh-----h--hHHHhccC---------------------CCCCCEEEEeC
Confidence 56677777777665544 346899999754 1 12222211 12233554444
Q ss_pred -CCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 813 -DVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 813 -~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
..+.+....++++|+.||+.+|++..+|.+.+.+..
T Consensus 50 ~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 50 GEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred CCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhc
Confidence 556889999999999999999999999999999874
No 194
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=88.58 E-value=4.4 Score=41.15 Aligned_cols=117 Identities=14% Similarity=0.193 Sum_probs=75.9
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
++++++|+++..+......|...|+.+..+.+..+++..+.. ..++++++|..+...+ .......++... ...
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~illd~~~~~~~---g~~~~~~l~~~~--~~~ 73 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES--GHYSLVVLDLGLPDED---GLHLLRRWRQKK--YTL 73 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEECCCCCCC---HHHHHHHHHhcC--CCC
Confidence 368999999999999999999999999999999988877654 3467888886654332 223344444322 223
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
+++++........... .-..+...++.||+....+...+...+.
T Consensus 74 pii~ls~~~~~~~~~~-~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 74 PVLILTARDTLEDRVA-GLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred cEEEEECCCCHHHHHH-HHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 3333432222111111 1122556799999999999888877664
No 195
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=88.52 E-value=1.9 Score=52.26 Aligned_cols=97 Identities=10% Similarity=0.069 Sum_probs=66.1
Q ss_pred eEEEEcCCH-HH-----HHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccc
Q 003018 711 KILIVDDNN-VN-----LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784 (856)
Q Consensus 711 ~ILvVdDn~-~n-----~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~ 784 (856)
+|+|||++- .+ .+.+...|++.|++|..+.+..+++.........+.|++|.+-. ..++++.||+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----- 73 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEY---SLDLCSDINQL----- 73 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcccceeEEEEecccc---hHHHHHHHHHh-----
Confidence 467776662 22 45677788889999999999999999887666788999995332 24578888863
Q ss_pred ccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 785 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
+..+||+++.............-.-.++|+-
T Consensus 74 -----------------~~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (713)
T PRK15399 74 -----------------NEYLPLYAFINTHSTMDVSVQDMRMALWFFE 104 (713)
T ss_pred -----------------CCCCCEEEEcCccccccCChhHhhhcceeee
Confidence 3479999988754333222222223445554
No 196
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=88.23 E-value=6 Score=40.10 Aligned_cols=117 Identities=14% Similarity=0.188 Sum_probs=76.2
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
++++++|+++.........|...|+.+..+.+..+++..+.. ..++++++|......+ ...+...++... ...
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~i~~~~--~~~ 73 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMD---GRDILREWREKG--QRE 73 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcC--CCC
Confidence 368999999999999999999999999999998888877654 3468888887654322 223444444321 223
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
++++++......... ..-..+...++.||+....+...+...+.
T Consensus 74 ~ii~lt~~~~~~~~~-~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 74 PVLILTARDALAERV-EGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred cEEEEECCCCHHHHH-HHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 344443322211111 11122556789999999999888877664
No 197
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=87.83 E-value=5.2 Score=40.88 Aligned_cols=118 Identities=16% Similarity=0.214 Sum_probs=76.6
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
++++++|+++.........|...|+.+..+.+..+++..+.. ..++.+++|......+ .......++... ...
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~---g~~l~~~lr~~~--~~~ 73 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE--HLPDIAIVDLGLPDED---GLSLIRRWRSND--VSL 73 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcC--CCC
Confidence 368999999999888899999999999999999999877653 3467888876554322 223344444422 122
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
+++++.......... ..-..+...++.||+....+...+...+..
T Consensus 74 pii~ls~~~~~~~~~-~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 74 PILVLTARESWQDKV-EVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred CEEEEEcCCCHHHHH-HHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 333333222211111 111225567999999999999888877643
No 198
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=87.09 E-value=3.6 Score=41.21 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=75.2
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.-|.+|||+..-+......|...|+++....+..+-+... . ......++.|..+....+ ..+...+...+.. -|
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~-~-~~~pGclllDvrMPg~sG---lelq~~L~~~~~~-~P 78 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA-P-LDRPGCLLLDVRMPGMSG---LELQDRLAERGIR-LP 78 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhc-c-CCCCCeEEEecCCCCCch---HHHHHHHHhcCCC-CC
Confidence 4578999999999999999999999999999998888762 1 223345556655443332 2334444443322 14
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
.+|+..-+.-+-.-...+. |...++.||++.+.+.+++++++..
T Consensus 79 VIfiTGhgDIpmaV~AmK~--GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 79 VIFLTGHGDIPMAVQAMKA--GAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred EEEEeCCCChHHHHHHHHc--chhhHHhCCCchHHHHHHHHHHHHH
Confidence 4443322211111112222 4557899999999999999988764
No 199
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=87.04 E-value=7.8 Score=39.46 Aligned_cols=117 Identities=14% Similarity=0.173 Sum_probs=76.5
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++.........+...|+.+..+.+..+++..+.. ..++.+++|....... ....+..++... ...
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~~--~~~ 76 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ--QPPDLVILDVGLPDIS---GFELCRQLLAFH--PAL 76 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--CCC
Confidence 479999999998888888999999999989898888876643 3467888876654332 223444554432 223
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
+++++........... .-..+...++.||+....+...+...+.
T Consensus 77 ~ii~ls~~~~~~~~~~-a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 120 (228)
T PRK11083 77 PVIFLTARSDEVDRLV-GLEIGADDYVAKPFSPREVAARVRTILR 120 (228)
T ss_pred CEEEEEcCCcHHHHHH-HhhcCCCeEEECCCCHHHHHHHHHHHHC
Confidence 4444433222111111 1123566899999999999888887664
No 200
>CHL00148 orf27 Ycf27; Reviewed
Probab=87.00 E-value=7 Score=40.31 Aligned_cols=117 Identities=18% Similarity=0.208 Sum_probs=76.8
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
.++++++|+++.........++..|+.+..+.+..+++..+.. ..++++++|....... ....+..++.. ..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~--~~~d~illd~~~~~~~---g~~~~~~l~~~---~~ 77 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK--EQPDLVILDVMMPKLD---GYGVCQEIRKE---SD 77 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhc---CC
Confidence 4689999999999999999999999999988999888876644 3467888886654432 22334444432 13
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.++++++........... -..+...++.||+....+...+...+.
T Consensus 78 ~~ii~ls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 78 VPIIMLTALGDVSDRITG-LELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred CcEEEEECCCCHHhHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 334444332221111111 112456789999999999888877664
No 201
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=86.99 E-value=6.2 Score=40.19 Aligned_cols=116 Identities=15% Similarity=0.196 Sum_probs=75.7
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++.........++..|+.+..+.+..+++..+.. ..++++++|..+...+ ...++..++... ..
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~~---~~ 74 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN--QHVDLILLDINLPGED---GLMLTRELRSRS---TV 74 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhCC---CC
Confidence 478999999999888889999999999999999998877654 3478888876553322 223444454421 23
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.+++++......... ..-..+...++.||+....+...+...+.
T Consensus 75 ~ii~l~~~~~~~~~~-~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~ 118 (221)
T PRK10766 75 GIILVTGRTDSIDRI-VGLEMGADDYVTKPLELRELLVRVKNLLW 118 (221)
T ss_pred CEEEEECCCcHHHHH-HHHHcCCCcEEeCCCCHHHHHHHHHHHHh
Confidence 344443322211111 11123556799999999998887766553
No 202
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=86.59 E-value=6.9 Score=39.79 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=76.6
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
++++++|+++..+......++..|+.+..+.+..+++..+.. ..++.+++|..+...+ .......++.. ...
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~~---~~~ 72 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPGMD---GWQILQTLRTA---KQT 72 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEECCCCCCC---HHHHHHHHHcC---CCC
Confidence 368999999999999999999999999999999998877654 4578888876654432 22234444432 123
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
+++++......... ...-..+...++.||+....+...+...+.
T Consensus 73 ~ii~ls~~~~~~~~-~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 116 (223)
T PRK11517 73 PVICLTARDSVDDR-VRGLDSGANDYLVKPFSFSELLARVRAQLR 116 (223)
T ss_pred CEEEEECCCCHHHH-HHHHhcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 34444332211111 111123566799999999999888887764
No 203
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=86.59 E-value=5.6 Score=41.31 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=76.0
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCce
Q 003018 563 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (856)
+++++|+++..+......|+..|+.+..+.+..+++..+.. ..++++++|..+...+ .......++.. ....
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~---g~~~~~~ir~~---~~~p 74 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR--EQPDLVLLDIMLPGKD---GMTICRDLRPK---WQGP 74 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhc---CCCC
Confidence 68999999999999999999999999999999998887654 3468888886654332 22334444442 1223
Q ss_pred EEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 643 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 643 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
++++........... .-..+...++.||+....+...+...+.
T Consensus 75 ii~l~~~~~~~~~~~-~~~~Ga~d~l~kP~~~~~l~~~i~~~l~ 117 (240)
T PRK10701 75 IVLLTSLDSDMNHIL-ALEMGACDYILKTTPPAVLLARLRLHLR 117 (240)
T ss_pred EEEEECCCCHHHHHH-HHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 333333222111111 1122566899999999999888877664
No 204
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=86.57 E-value=6.1 Score=40.37 Aligned_cols=116 Identities=17% Similarity=0.232 Sum_probs=75.4
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......|+..|+.+..+.+..+++..+.. ..++.+++|..+...+ .......++.. ...
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~---~~~ 73 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGD---GIEFIRDLRQW---SAI 73 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHcC---CCC
Confidence 368999999999999999999999999999998888876543 3468888887654432 22334444432 122
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
++++++........ ...-..+...++.||+....+...+...+.
T Consensus 74 pvi~lt~~~~~~~~-~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 74 PVIVLSARSEESDK-IAALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred CEEEEECCCCHHHH-HHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 33333322211111 111122456799999999999888877664
No 205
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=85.84 E-value=3.1 Score=50.52 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=58.1
Q ss_pred eEEEEcCC-HHH-----HHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccc
Q 003018 711 KILIVDDN-NVN-----LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784 (856)
Q Consensus 711 ~ILvVdDn-~~n-----~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~ 784 (856)
+||+|+++ ..+ .+.+...|++.|++|..+.+..+++.........+.|+.|.+- -..++++.||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----- 73 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDK---YNLELCEEISKM----- 73 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcccceeEEEEecch---hhHHHHHHHHHh-----
Confidence 35666555 222 4667778899999999999999999988666678899999532 124477778763
Q ss_pred ccccccccchhhhccCCCCCCcEEEEecCCC
Q 003018 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVI 815 (856)
Q Consensus 785 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~ 815 (856)
+..+||+++.....
T Consensus 74 -----------------~~~~Pv~~~~~~~~ 87 (714)
T PRK15400 74 -----------------NENLPLYAFANTYS 87 (714)
T ss_pred -----------------CCCCCEEEEccccc
Confidence 34799999877543
No 206
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=85.75 E-value=7.1 Score=41.42 Aligned_cols=120 Identities=11% Similarity=0.181 Sum_probs=76.9
Q ss_pred cEEEEeCCchhhhHHHHHHHHHh-CcEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~-g~~v-~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.+++++|+++.........+... ++.+ ..+.+..+++..+.. ..++++++|..+...+. ......++......
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~--~~~DlvllD~~mp~~dG---~~~l~~i~~~~~~~ 77 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE--QQPDVVVLDIIMPHLDG---IGVLEKLNEIELSA 77 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCH---HHHHHHHHhhcccc
Confidence 57999999999998888888764 5554 468899999887764 35788888877654332 23344444433222
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
.++++++...... .........+...++.||+....+...+++.+..
T Consensus 78 ~~~iI~lt~~~~~-~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 78 RPRVIMLSAFGQE-KITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred CCeEEEEeCCCCH-HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 3445544332221 1111111235667999999999999999887643
No 207
>PRK13856 two-component response regulator VirG; Provisional
Probab=85.60 E-value=6.6 Score=40.91 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=75.3
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCce
Q 003018 563 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (856)
+++++|+++..+......|+..|+.+..+.+..+++..+.. ..++++++|..+...+ .......++.. ....
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~---g~~l~~~i~~~---~~~p 74 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS--ETVDVVVVDLNLGRED---GLEIVRSLATK---SDVP 74 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhc---CCCc
Confidence 68999999999999999999999999999999888876643 3568888876654332 12234444432 1233
Q ss_pred EEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 643 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 643 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
+++++............-..+...++.||+....+...++..+.
T Consensus 75 ii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~ 118 (241)
T PRK13856 75 IIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred EEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHh
Confidence 33333211111111011123566899999999999888877664
No 208
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=85.57 E-value=6.6 Score=41.11 Aligned_cols=117 Identities=19% Similarity=0.330 Sum_probs=73.8
Q ss_pred cEEEEeCCchhhhHHHHHHHHHh-CcEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~-g~~v-~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.+++++|+++..+......|... |+.+ ..+++..+++..+......++++++|..+...+. ......+++...
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G---~eli~~l~~~~~-- 76 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENG---LDLLPVLHEAGC-- 76 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCc---HHHHHHHHhhCC--
Confidence 36899999999988888888764 6764 4678888888777544456788998876654432 223444443321
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHH
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 684 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~ 684 (856)
..++++++........... -..+...++.||+....+..++...
T Consensus 77 ~~~vI~ls~~~~~~~~~~a-l~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 77 KSDVIVISSAADAATIKDS-LHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred CCCEEEEECCCcHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 2344444433222111111 1225667999999999988888653
No 209
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=85.56 E-value=3.8 Score=41.82 Aligned_cols=114 Identities=16% Similarity=0.236 Sum_probs=71.7
Q ss_pred EEEEeCCchhhhHHHHHHHHHh-CcEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 563 KALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~-g~~v-~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
+||+++|++..+++.+.+++.. |+++ -.+.+..++...+..-.. +++++|-=+.+..+ ..++..++......
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~p--DLILLDiYmPd~~G---i~lL~~ir~~~~~~- 75 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKP--DLILLDIYMPDGNG---IELLPELRSQHYPV- 75 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhCC--CEEEEeeccCCCcc---HHHHHHHHhcCCCC-
Confidence 6899999999999999888875 7765 467888899888876544 88888765444332 22444454432221
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHH
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 684 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~ 684 (856)
..+++.+ .+..+.-...-..|+..++.||+....+..+|.+.
T Consensus 76 DVI~iTA--A~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y 117 (224)
T COG4565 76 DVIVITA--ASDMETIKEALRYGVVDYLIKPFTFERLQQALTRY 117 (224)
T ss_pred CEEEEec--cchHHHHHHHHhcCchhheecceeHHHHHHHHHHH
Confidence 2222222 22111111111235678999999999999888654
No 210
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=85.51 E-value=1.1 Score=54.15 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.3
Q ss_pred EEEEEecCCCCChhhHhhhcCccccCC
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTPFMQVG 487 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~pF~q~d 487 (856)
.|.|.|+|+||++++++-.+.++.+.+
T Consensus 54 ~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 54 LIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 499999999999999999999997643
No 211
>PRK13435 response regulator; Provisional
Probab=85.23 E-value=13 Score=35.09 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=74.0
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
..+++++|++.........++...|+.+. .+++..+++..+.. ..++.+++|....... ........++.. .
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~dliivd~~~~~~~--~~~~~~~~l~~~---~ 77 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR--RQPDVALVDVHLADGP--TGVEVARRLSAD---G 77 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh--cCCCEEEEeeecCCCC--cHHHHHHHHHhC---C
Confidence 46899999999999999999999999976 67888888776643 3568888876543211 112223333322 1
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
...++++...... .. ....+...++.||+....+...+.+...
T Consensus 78 ~~pii~ls~~~~~--~~--~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 120 (145)
T PRK13435 78 GVEVVFMTGNPER--VP--HDFAGALGVIAKPYSPRGVARALSYLSA 120 (145)
T ss_pred CCCEEEEeCCHHH--HH--HHhcCcceeEeCCCCHHHHHHHHHHHHh
Confidence 2334444332211 11 1123566889999999999998887753
No 212
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=84.51 E-value=11 Score=38.53 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=75.2
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCce
Q 003018 563 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (856)
+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...... ...+...++... ...+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~~~-g~~~~~~i~~~~--~~~p 76 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQR--LPDLAIIDIGLGEEIDG-GFMLCQDLRSLS--ATLP 76 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhC--CCCEEEEECCCCCCCCC-HHHHHHHHHhcC--CCCC
Confidence 589999999999888999999999999999988888776543 46788887665432111 223344444432 1223
Q ss_pred EEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 643 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 643 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
+++++......... ..-..+...++.||+....+...++..+.
T Consensus 77 ii~ls~~~~~~~~~-~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 77 IIFLTARDSDFDTV-SGLRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred EEEEECCCCHHHHH-HHHhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 44443322211111 11123566799999999999888877664
No 213
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=84.48 E-value=19 Score=34.23 Aligned_cols=111 Identities=8% Similarity=0.035 Sum_probs=71.5
Q ss_pred cCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccccc
Q 003018 716 DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 792 (856)
Q Consensus 716 dDn~~n~~~l~~~L~~~g~~v~~a---~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~ 792 (856)
|-+..-..++..+|+..||+|.-. .+.++.++... ++.+|+|.+.-.|.. -.+..+.+.+.-++
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~-e~~adii~iSsl~~~--~~~~~~~~~~~L~~---------- 79 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAV-EADVHVVGVSSLAGG--HLTLVPALRKELDK---------- 79 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH-HcCCCEEEEcCchhh--hHHHHHHHHHHHHh----------
Confidence 444555678899999999999864 35677777775 467999988665521 12333333321100
Q ss_pred chhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhh
Q 003018 793 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847 (856)
Q Consensus 793 ~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 847 (856)
.....++|+ +-+....++..+..++|+|+|+..=-+..+....+.+-
T Consensus 80 -------~g~~~i~vi-vGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~ 126 (132)
T TIGR00640 80 -------LGRPDILVV-VGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKK 126 (132)
T ss_pred -------cCCCCCEEE-EeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 011234444 44444566778889999999999888888887777653
No 214
>PRK15115 response regulator GlrR; Provisional
Probab=84.18 E-value=5.1 Score=46.33 Aligned_cols=118 Identities=16% Similarity=0.213 Sum_probs=79.1
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..+++++|+++..+......++..|+.+..+.+..+++..+.. ..++++++|..+...+ ....+..++... ..
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~--~~~dlvilD~~lp~~~---g~~ll~~l~~~~--~~ 77 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR--EKVDLVISDLRMDEMD---GMQLFAEIQKVQ--PG 77 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCC---HHHHHHHHHhcC--CC
Confidence 3689999999999999999999999999999999999887754 3468888887654432 222344444321 22
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..+++++.......... ....+...++.||+....+...+...+.
T Consensus 78 ~pvIvlt~~~~~~~~~~-a~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 78 MPVIILTAHGSIPDAVA-ATQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred CcEEEEECCCCHHHHHH-HHhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 33444433222111111 1123456789999999999998887764
No 215
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=84.04 E-value=11 Score=38.70 Aligned_cols=121 Identities=10% Similarity=0.135 Sum_probs=76.0
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCc-E-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGI-Q-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~-~-v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
+.+++++|+++.........|...+. . +..+.+..+++..+.. ..++++++|..............+..++...
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~-- 78 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK--LDAHVLITDLSMPGDKYGDGITLIKYIKRHF-- 78 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh--CCCCEEEEeCcCCCCCCCCHHHHHHHHHHHC--
Confidence 46899999999998888888887664 3 6678888888877654 3468888886654321001223444554421
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
...++++++........... ...+...++.||.....+..++..+..
T Consensus 79 ~~~~iIvls~~~~~~~~~~a-~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 79 PSLSIIVLTMNNNPAILSAV-LDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred CCCcEEEEEecCCHHHHHHH-HHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 22345555433222111111 223566899999999999988887653
No 216
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=83.65 E-value=5.1 Score=52.66 Aligned_cols=118 Identities=15% Similarity=0.273 Sum_probs=80.0
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..++|+||+++..+......|+.+|+.+..+.+..+++..+.. ..++++++|..+...+. ......++... ..
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~g---~~~~~~i~~~~--~~ 1030 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM--QHYDLLITDVNMPNMDG---FELTRKLREQN--SS 1030 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CC
Confidence 4689999999999999999999999999999999999988754 45788888876544332 22344444322 12
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.++++++.......... ....+...++.||+....+...+.+...
T Consensus 1031 ~pii~lt~~~~~~~~~~-~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1031 LPIWGLTANAQANEREK-GLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CCEEEEECCCCHHHHHH-HHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 23333333222111111 1123567899999999999988877654
No 217
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=83.24 E-value=13 Score=38.49 Aligned_cols=117 Identities=13% Similarity=0.160 Sum_probs=75.5
Q ss_pred CcEEEEeCCchhhhHHHHHHHHH-hCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQR-LGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~-~g~~-v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
..+++++|+++..+......+.. .|+. +..+.+..+++..+.. ..++++++|..+...+ ....+..++....
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--~~pdlvllD~~mp~~~---gle~~~~l~~~~~- 77 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER--FKPGLILLDNYLPDGR---GINLLHELVQAHY- 77 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCc---HHHHHHHHHhcCC-
Confidence 36899999999999888888886 4784 6788999999888754 3468888887665433 2234444444221
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
..++++++........... -..+...++.||+....+...+++..
T Consensus 78 -~~~iivls~~~~~~~~~~a-l~~Ga~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 78 -PGDVVFTTAASDMETVSEA-VRCGVFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred -CCCEEEEEcCCCHHHHHHH-HHcCccEEEECCcCHHHHHHHHHHHH
Confidence 2334444332221111111 12356689999999999998887653
No 218
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=83.24 E-value=7.6 Score=38.93 Aligned_cols=117 Identities=10% Similarity=0.216 Sum_probs=75.8
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
++++++|+++.........|+..|+.+. .+.+..+++..+.. ..++++++|........ ..+...++... ..
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g---~~~~~~l~~~~--~~ 73 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVNG---IQVLETLRKRQ--YS 73 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc--cCCCEEEEeCCCCCCCH---HHHHHHHHhhC--CC
Confidence 4689999999999999999999999987 68888888877654 35688888776543322 22344444322 12
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.+++++.......... ..-..+...++.||+....+...++..+.
T Consensus 74 ~~ii~ls~~~~~~~~~-~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 118 (204)
T PRK09958 74 GIIIIVSAKNDHFYGK-HCADAGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred CeEEEEeCCCCHHHHH-HHHHCCCCEEEecCCCHHHHHHHHHHHHc
Confidence 2344443322211111 11123566899999999999999888764
No 219
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=82.93 E-value=4.7 Score=46.50 Aligned_cols=118 Identities=19% Similarity=0.290 Sum_probs=77.3
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..+++++|+++..+......+..+|+.+..+.+..+++..+.. ..++++++|..+...+ .......++... ..
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~DlvilD~~m~~~~---G~~~~~~ir~~~--~~ 77 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRMAEMD---GIATLKEIKALN--PA 77 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--CC
Confidence 4689999999999999999999999999999999999887754 3468888887665432 222334444321 22
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..+++++........... -..+...++.||+....+...+..++.
T Consensus 78 ~~vi~lt~~~~~~~~~~a-~~~ga~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 78 IPVLIMTAYSSVETAVEA-LKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred CeEEEEECCCCHHHHHHH-HHhhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 334444332211111111 112455788999999988888876553
No 220
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=82.66 E-value=7.2 Score=45.46 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=77.3
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.++++||+++..+......+...|+.+..+.+..+++..+.. ..++++++|..+...+ ....+..++... ...
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~--~~~DlvllD~~lp~~d---gl~~l~~ir~~~--~~~ 76 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS--KTPDVLLSDIRMPGMD---GLALLKQIKQRH--PML 76 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEECCCCCCCC---HHHHHHHHHhhC--CCC
Confidence 479999999999999999999999999999999999988764 3468888887654432 222344444322 123
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.+++++.......... .-..+...++.||+....+...+...+.
T Consensus 77 pvIvlt~~~~~~~~~~-a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 77 PVIIMTAHSDLDAAVS-AYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred eEEEEECCCCHHHHHH-HHhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 3344433222111111 1122566899999999888887766553
No 221
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=81.97 E-value=0.99 Score=55.13 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=23.6
Q ss_pred CceEeecH---HHHHHHHHHHHHHHhhcCCC---CeEEEEE
Q 003018 366 PETLIGDP---GRFRQIITNLMGNSIKFTEK---GHIFVTV 400 (856)
Q Consensus 366 p~~v~~D~---~rl~qIl~NLl~NAiKfT~~---G~I~v~v 400 (856)
|.+.+|+- .-|.+++.-||+|||.-.-. ..|.|.+
T Consensus 25 PgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i 65 (756)
T PRK14939 25 PGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTI 65 (756)
T ss_pred CCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEE
Confidence 55566643 45899999999999983323 3555554
No 222
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=81.74 E-value=24 Score=31.12 Aligned_cols=119 Identities=15% Similarity=0.260 Sum_probs=71.3
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
..+++++++++.........+..+|+. +..+.+..+++..... ..++.++++...... ........++......
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~di~l~d~~~~~~---~~~~~~~~l~~~~~~~ 79 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFVISDWNMPNM---DGLELLKTIRADGAMS 79 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--cCCCEEEEcCCCCCC---CHHHHHHHHHhCCCcC
Confidence 468899999999999899999999984 7778888888776543 346677776543221 1223344444432222
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
...++++........... ....+...++.||+....+...+++.+
T Consensus 80 ~~~~i~~~~~~~~~~~~~-~~~~g~~~~i~~p~~~~~l~~~l~~~~ 124 (129)
T PRK10610 80 ALPVLMVTAEAKKENIIA-AAQAGASGYVVKPFTAATLEEKLNKIF 124 (129)
T ss_pred CCcEEEEECCCCHHHHHH-HHHhCCCeEEECCCCHHHHHHHHHHHH
Confidence 223333332211111111 111245678899999988887776654
No 223
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=81.71 E-value=14 Score=38.73 Aligned_cols=86 Identities=21% Similarity=0.242 Sum_probs=59.6
Q ss_pred HHhhcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCC---------C-CCHHHHHHHHHhhcccccccccccccchh
Q 003018 728 GLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMP---------E-MDGFEATKIIREMEHNFNNRIRRGEVSIE 795 (856)
Q Consensus 728 ~L~~~g~~v~--~a~~g~eA~~~l~~~~~~DlilmDi~MP---------~-mdG~e~~~~IR~~~~~~~~~~~~g~~~~~ 795 (856)
.|-+.|+.|. |++|...|-.+.. -.+|+| || + .+ .+.++.|++.
T Consensus 118 ~L~~~Gf~vlpyc~dd~~~ar~l~~--~G~~~v-----mPlg~pIGsg~Gi~~-~~~I~~I~e~---------------- 173 (248)
T cd04728 118 ILVKEGFTVLPYCTDDPVLAKRLED--AGCAAV-----MPLGSPIGSGQGLLN-PYNLRIIIER---------------- 173 (248)
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHH--cCCCEe-----CCCCcCCCCCCCCCC-HHHHHHHHHh----------------
Confidence 3445699876 6677777766552 357887 77 1 23 6778888762
Q ss_pred hhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEE-----eCCCCHHHHHHHH
Q 003018 796 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREV 844 (856)
Q Consensus 796 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~~~l 844 (856)
..+|||+=-+-..+++..+|++.|+|+++ .|.-++..+.++.
T Consensus 174 -------~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af 220 (248)
T cd04728 174 -------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAF 220 (248)
T ss_pred -------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHH
Confidence 25899988888889999999999999995 4533444444333
No 224
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=81.29 E-value=1.1 Score=53.72 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=31.3
Q ss_pred EEEEEecCCCCChhhHh-----------hhcCccccC---CCCCCCCCCcccchHHHHHHHHHHc
Q 003018 461 IVSVEDTGQGIPLEAQS-----------RIFTPFMQV---GPSISRTHGGTGIGLSISKYLVGRM 511 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~-----------~iF~pF~q~---d~s~~~~~~GtGLGLsI~k~lv~~m 511 (856)
.|+|.|+|.|||-+... -+|.-.... |.+..-..|-.|.|.+.|.-|-+.+
T Consensus 80 sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~ 144 (602)
T PHA02569 80 QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLF 144 (602)
T ss_pred EEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhh
Confidence 48999999999986542 223222111 1111122344899999998887765
No 225
>PRK00208 thiG thiazole synthase; Reviewed
Probab=80.97 E-value=15 Score=38.52 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=59.7
Q ss_pred HHHhhcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCC---------C-CCHHHHHHHHHhhcccccccccccccch
Q 003018 727 AGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMP---------E-MDGFEATKIIREMEHNFNNRIRRGEVSI 794 (856)
Q Consensus 727 ~~L~~~g~~v~--~a~~g~eA~~~l~~~~~~DlilmDi~MP---------~-mdG~e~~~~IR~~~~~~~~~~~~g~~~~ 794 (856)
+.|-+.|+.|. |++|...|-.+.. -.+|+| || + .+ .+.++.|++.
T Consensus 117 ~~L~~~Gf~vlpyc~~d~~~ak~l~~--~G~~~v-----mPlg~pIGsg~gi~~-~~~i~~i~e~--------------- 173 (250)
T PRK00208 117 EILVKEGFVVLPYCTDDPVLAKRLEE--AGCAAV-----MPLGAPIGSGLGLLN-PYNLRIIIEQ--------------- 173 (250)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHH--cCCCEe-----CCCCcCCCCCCCCCC-HHHHHHHHHh---------------
Confidence 34445699876 6777777766552 357887 77 1 23 6777888762
Q ss_pred hhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEE-----eCCCCHHHHHHH
Q 003018 795 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYRE 843 (856)
Q Consensus 795 ~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~~~ 843 (856)
..+|||+=-+-..+++..+|++.|+|+++ .|.-++..+.++
T Consensus 174 --------~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~a 219 (250)
T PRK00208 174 --------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARA 219 (250)
T ss_pred --------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHH
Confidence 25899988888889999999999999995 463344444433
No 226
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=80.50 E-value=5.1 Score=46.15 Aligned_cols=116 Identities=16% Similarity=0.313 Sum_probs=77.1
Q ss_pred EEEEeCCchhhhHHHHHHHHH--hCcEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 563 KALVVDPRPIRAKVSRYHIQR--LGIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~--~g~~v-~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
+|++|||.+.-++-.+..+.. +|+.+ ..|.++.+|+..+.. ..+++++.|-.++..++-- +...++. ..+
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e--~~pDiviTDI~MP~mdGLd---LI~~ike--~~p 75 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE--TQPDIVITDINMPGMDGLD---LIKAIKE--QSP 75 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh--cCCCEEEEecCCCCCcHHH---HHHHHHH--hCC
Confidence 689999999988887777654 57764 478899999998876 4578888888777665432 3334443 223
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
....+++. +.+.-+-....-..++..++.||+....+..+|.+..+
T Consensus 76 ~~~~IILS-Gy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~ 121 (475)
T COG4753 76 DTEFIILS-GYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIG 121 (475)
T ss_pred CceEEEEe-ccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHH
Confidence 34444443 33221111122234667899999999999999987765
No 227
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=80.06 E-value=34 Score=32.63 Aligned_cols=108 Identities=12% Similarity=0.075 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCC-C-HHHHHHHHHhhccccccccccccc
Q 003018 718 NNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEM-D-GFEATKIIREMEHNFNNRIRRGEV 792 (856)
Q Consensus 718 n~~n~~~l~~~L~~~g~~v~~a---~~g~eA~~~l~~~~~~DlilmDi~MP~m-d-G~e~~~~IR~~~~~~~~~~~~g~~ 792 (856)
+..-..++..+|+..||+|... ...++-++... ++.+|+|-+...|-.. . --++.+.+|+. |
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~-~~~adiVglS~l~~~~~~~~~~~~~~l~~~----------g-- 80 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAI-ETKADAILVSSLYGHGEIDCKGLRQKCDEA----------G-- 80 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEecccccCHHHHHHHHHHHHHC----------C--
Confidence 3344578899999999999864 45667777764 5689999988776422 1 12233444431 1
Q ss_pred chhhhccCCCCCCcEEEEecCC--CHHh----HHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 793 SIEAYENVSNFHVPILAMTADV--IQAT----YEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 793 ~~~~~~~~~~~~~pIIalTa~~--~~~~----~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
...+ .|++-+.. .+++ ..+..++|++......-..+++...|++.+
T Consensus 81 ---------l~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 81 ---------LEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred ---------CCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 1133 34444431 1222 346889999999998888899988888765
No 228
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=79.03 E-value=2.3 Score=50.21 Aligned_cols=48 Identities=15% Similarity=0.242 Sum_probs=28.5
Q ss_pred EEEEEEecCCCCChhhHhhhc------------CccccCCCCCCCCCCcccchHHHHHHHH
Q 003018 460 LIVSVEDTGQGIPLEAQSRIF------------TPFMQVGPSISRTHGGTGIGLSISKYLV 508 (856)
Q Consensus 460 l~i~V~DtG~GI~~e~~~~iF------------~pF~q~d~s~~~~~~GtGLGLsI~k~lv 508 (856)
=.++|+|||+||..++...-. +.+.+ +...+.--|-.|+|++=|--.+
T Consensus 74 kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~-~~~~~~lIGQFGVGFYSaFmVA 133 (623)
T COG0326 74 KTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSE-DQKDSDLIGQFGVGFYSAFMVA 133 (623)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhcc-ccccccccccccchhhheeeee
Confidence 368999999999998754321 22211 1111223466788888665444
No 229
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=78.95 E-value=11 Score=34.74 Aligned_cols=92 Identities=25% Similarity=0.313 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeC-CCCCC-CHHHHHHHHHhhcccccccccccccc
Q 003018 719 NVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDI-QMPEM-DGFEATKIIREMEHNFNNRIRRGEVS 793 (856)
Q Consensus 719 ~~n~~~l~~~L~~~g~~v~~a~---~g~eA~~~l~~~~~~DlilmDi-~MP~m-dG~e~~~~IR~~~~~~~~~~~~g~~~ 793 (856)
+.-...+..+|++.|++|.... +.++..+.+. ..+||+|.+.. ..+.. ...++++.+|+.
T Consensus 14 ~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~-~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~-------------- 78 (121)
T PF02310_consen 14 PLGLLYLAAYLRKAGHEVDILDANVPPEELVEALR-AERPDVVGISVSMTPNLPEAKRLARAIKER-------------- 78 (121)
T ss_dssp SHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHH-HTTCSEEEEEESSSTHHHHHHHHHHHHHTT--------------
T ss_pred hHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHh-cCCCcEEEEEccCcCcHHHHHHHHHHHHhc--------------
Confidence 4567889999999999998762 3455556554 45799999998 44433 234445555542
Q ss_pred hhhhccCCCCCCcEEEEecCCCHHhHHHHHH--cCCCeEEeCC
Q 003018 794 IEAYENVSNFHVPILAMTADVIQATYEECLR--SGMDGYVSKP 834 (856)
Q Consensus 794 ~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~--aG~d~yl~KP 834 (856)
.++++|+ +-+.......+++++ .|+|..+.-.
T Consensus 79 --------~p~~~iv-~GG~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 79 --------NPNIPIV-VGGPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp --------CTTSEEE-EEESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred --------CCCCEEE-EECCchhcChHHHhccCcCcceecCCC
Confidence 3345555 444444555566675 7888776544
No 230
>PRK14084 two-component response regulator; Provisional
Probab=78.93 E-value=15 Score=38.30 Aligned_cols=115 Identities=13% Similarity=0.303 Sum_probs=74.4
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhC-c-EEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLG-I-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g-~-~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
++++++|+++..+......+...+ + .+..+.+..+++..+.. ..++++++|..+...+ .......++... .
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~--~~~dlv~lDi~m~~~~---G~~~~~~i~~~~--~ 73 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI--NQYDIIFLDINLMDES---GIELAAKIQKMK--E 73 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhcC--C
Confidence 368999999999888888998876 3 46778899888887764 3578889888765432 223344444322 1
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.+.++.++. ...... . .-..+...++.||+....+..++.++..
T Consensus 74 ~~~iI~~t~-~~~~~~-~-~~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (246)
T PRK14084 74 PPAIIFATA-HDQFAV-K-AFELNATDYILKPFEQKRIEQAVNKVRA 117 (246)
T ss_pred CCEEEEEec-ChHHHH-H-HHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 233333332 221111 1 1123456799999999999998887753
No 231
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=78.77 E-value=29 Score=35.58 Aligned_cols=116 Identities=13% Similarity=0.181 Sum_probs=75.6
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++.........+...|+.+..+.+..+++..+.. ..++.+++|....... .......++.. ...
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~---~~~ 82 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ--TPPDLILLDLMLPGTD---GLTLCREIRRF---SDI 82 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhc---CCC
Confidence 379999999999999999999999999999999988887653 3467888876654332 22334444432 123
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
+++++............ -..+...++.||+....+...+...+.
T Consensus 83 pii~l~~~~~~~~~~~~-~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 83 PIVMVTAKIEEIDRLLG-LEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred CEEEEEcCCCHHHHHHH-HhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 34444332221111111 122456799999999998888776654
No 232
>PRK09191 two-component response regulator; Provisional
Probab=78.72 E-value=21 Score=37.48 Aligned_cols=115 Identities=15% Similarity=0.210 Sum_probs=73.8
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
.+++++|+++..+......++..|+.+. .+.+..+++..+.. ..++++++|....... .....+..++... .
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--~~~dlvi~d~~~~~~~--~g~e~l~~l~~~~---~ 210 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK--TRPGLILADIQLADGS--SGIDAVNDILKTF---D 210 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--cCCCEEEEecCCCCCC--CHHHHHHHHHHhC---C
Confidence 4689999999999999999999999987 67888888877654 3578888887654211 1222344444432 2
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.++++++..... .. .....+...++.||+....+...+.+++.
T Consensus 211 ~pii~ls~~~~~-~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~ 253 (261)
T PRK09191 211 VPVIFITAFPER-LL--TGERPEPAFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred CCEEEEeCCCcH-HH--HHHhcccCceEECCCCHHHHHHHHHHHHh
Confidence 333333332111 11 11111234578999999999999887654
No 233
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=78.33 E-value=1.2 Score=53.69 Aligned_cols=51 Identities=29% Similarity=0.517 Sum_probs=30.4
Q ss_pred EEEEEecCCCCChhhHh--------hhcCccccC---CCCCCCCCCc-ccchHHHHHHHHHHc
Q 003018 461 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGRM 511 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~--------~iF~pF~q~---d~s~~~~~~G-tGLGLsI~k~lv~~m 511 (856)
.|+|.|+|.|||.+..+ -+|.-.... |.+..+..|| -|.|++.+.-|.+.+
T Consensus 67 sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~~ 129 (637)
T TIGR01058 67 SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSWL 129 (637)
T ss_pred eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccceeeceE
Confidence 48999999999975332 234322111 1122222334 699999988887643
No 234
>PRK09483 response regulator; Provisional
Probab=78.31 E-value=16 Score=36.85 Aligned_cols=117 Identities=9% Similarity=0.118 Sum_probs=74.9
Q ss_pred cEEEEeCCchhhhHHHHHHHHHh-CcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~-g~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.+++++|+++..+......|+.. |+.+. .+.+..+++..+.. ..++.+++|......+. ..++..++... .
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g---~~~~~~l~~~~--~ 74 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT--NAVDVVLMDMNMPGIGG---LEATRKILRYT--P 74 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCH---HHHHHHHHHHC--C
Confidence 36899999999999888889875 88875 67888888877654 45688888876544322 22344444322 1
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..+++++............ -..+...++.||.....+..++..++.
T Consensus 75 ~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~k~~~~~~l~~~i~~~~~ 120 (217)
T PRK09483 75 DVKIIMLTVHTENPLPAKV-MQAGAAGYLSKGAAPQEVVSAIRSVHS 120 (217)
T ss_pred CCeEEEEeCCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 2344444332222111111 122566889999999999999887764
No 235
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=77.97 E-value=11 Score=43.60 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=77.0
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
+.+++++|+++.........+..+|+.+..+.+..+++..+... .++.+++|..+...+ ....+..++... ..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlillD~~~p~~~---g~~ll~~i~~~~--~~ 76 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI--HPDVVLMDIRMPEMD---GIKALKEMRSHE--TR 76 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHhcC--CC
Confidence 45799999999999999999999999999999999998877543 468888887654332 223344444322 12
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..+++++..... ......-..+...++.||+....+...+...+.
T Consensus 77 ~pvI~lt~~~~~-~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 77 TPVILMTAYAEV-ETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred CCEEEEeCCCCH-HHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 333333322111 111111122566799999999988888776654
No 236
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=77.95 E-value=22 Score=36.42 Aligned_cols=101 Identities=21% Similarity=0.189 Sum_probs=66.8
Q ss_pred CCeEEEE----cCCHHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCC--CHHHHHHHHHhh
Q 003018 709 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM--DGFEATKIIREM 779 (856)
Q Consensus 709 ~~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eA~~~l~~~~~~DlilmDi~MP~m--dG~e~~~~IR~~ 779 (856)
+.+||+. |-+..=..++..+|+..||+|.... ..++-++.+. ...||+|-+-..|+.. +..++.+.+|+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~-~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~ 160 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVK-EHKPDILGLSALMTTTMGGMKEVIEALKEA 160 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHHC
Confidence 3578888 7788778999999999999998542 3456566664 5789999999877654 223444555542
Q ss_pred cccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeC
Q 003018 780 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833 (856)
Q Consensus 780 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~K 833 (856)
. ....++|++-=+.... + -+-..|+|.|-.=
T Consensus 161 ~--------------------~~~~~~i~vGG~~~~~-~--~~~~~GaD~~~~d 191 (201)
T cd02070 161 G--------------------LRDKVKVMVGGAPVNQ-E--FADEIGADGYAED 191 (201)
T ss_pred C--------------------CCcCCeEEEECCcCCH-H--HHHHcCCcEEECC
Confidence 1 1225666654443333 2 4667799988753
No 237
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=77.76 E-value=15 Score=37.00 Aligned_cols=115 Identities=18% Similarity=0.205 Sum_probs=73.3
Q ss_pred EEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCceE
Q 003018 564 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 643 (856)
Q Consensus 564 ~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (856)
++++|+++.........+...|+.+..+.+..+++..+.. ..++.+++|..+...+ .......++... ...++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~~--~~~~i 73 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK--DDYDLIILDVMLPGMD---GWQILQTLRRSG--KQTPV 73 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHccC--CCCcE
Confidence 3678899888888888899999999999999998887654 3477888876544322 223344444322 12334
Q ss_pred EEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 644 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 644 ~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
++++........... -..+...++.||+....+...+...+.
T Consensus 74 ivls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 115 (218)
T TIGR01387 74 LFLTARDSVADKVKG-LDLGADDYLVKPFSFSELLARVRTLLR 115 (218)
T ss_pred EEEEcCCCHHHHHHH-HHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 444332221111111 122566799999999999888877664
No 238
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=77.24 E-value=54 Score=31.07 Aligned_cols=104 Identities=11% Similarity=0.063 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCC-CCH-HHHHHHHHhhcccccccccccccc
Q 003018 719 NVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE-MDG-FEATKIIREMEHNFNNRIRRGEVS 793 (856)
Q Consensus 719 ~~n~~~l~~~L~~~g~~v~~a---~~g~eA~~~l~~~~~~DlilmDi~MP~-mdG-~e~~~~IR~~~~~~~~~~~~g~~~ 793 (856)
..-..++..+|+..||+|.-. ...++-++... ++.+|+|.+...|.. |.. -++.+.+|+.
T Consensus 13 diGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~-~~~adiVglS~L~t~~~~~~~~~~~~l~~~-------------- 77 (128)
T cd02072 13 AVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAI-ETDADAILVSSLYGHGEIDCKGLREKCDEA-------------- 77 (128)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccCCHHHHHHHHHHHHHC--------------
Confidence 344578889999999999853 45566666664 568999998877653 322 2344555541
Q ss_pred hhhhccCCCCCCcEEEEecCC--C----HHhHHHHHHcCCCeEEeCCCCHHHHHHHHh
Q 003018 794 IEAYENVSNFHVPILAMTADV--I----QATYEECLRSGMDGYVSKPFEAEQLYREVS 845 (856)
Q Consensus 794 ~~~~~~~~~~~~pIIalTa~~--~----~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 845 (856)
...++||+ +-+.. . .++..+..+.|++......-+++++...|.
T Consensus 78 -------gl~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 78 -------GLKDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred -------CCCCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 11244544 33331 1 334566889999999998888888877665
No 239
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=77.10 E-value=19 Score=36.38 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=73.1
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCce
Q 003018 563 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (856)
+++++|+++.........+...|..+..+.+..++...+.. ..++.+++|....... .......++... ...+
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~vild~~~~~~~---~~~~~~~i~~~~--~~~~ 74 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS--EMYALAVLDINMPGMD---GLEVLQRLRKRG--QTLP 74 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCc---HHHHHHHHHhcC--CCCC
Confidence 68899999998888888999999999999998888766543 3467788776543322 122334444322 1233
Q ss_pred EEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 643 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 643 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
++++........... .-..+...++.||+....+...+...+.
T Consensus 75 ii~lt~~~~~~~~~~-~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 75 VLLLTARSAVADRVK-GLNVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred EEEEECCCCHHHHHH-HHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 334433222111111 1112566799999999999888877654
No 240
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=76.65 E-value=18 Score=37.54 Aligned_cols=104 Identities=17% Similarity=0.141 Sum_probs=68.5
Q ss_pred CeEEEE----cCCHHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCC-CH-HHHHHHHHhhc
Q 003018 710 RKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM-DG-FEATKIIREME 780 (856)
Q Consensus 710 ~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eA~~~l~~~~~~DlilmDi~MP~m-dG-~e~~~~IR~~~ 780 (856)
.+|++. |.+..=..++..+|+..|++|.... ..++.++.+. +..+|+|.+-..|+.- .. -++.+++|+.
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~-~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~- 166 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAK-EHKADIIGLSGLLVPSLDEMVEVAEEMNRR- 166 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEccchhccHHHHHHHHHHHHhc-
Confidence 478888 8888888999999999999998753 3455566664 5789999999888632 22 2334445431
Q ss_pred ccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHH---HHHcCCCeEEeCCCC
Q 003018 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE---CLRSGMDGYVSKPFE 836 (856)
Q Consensus 781 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~---~~~aG~d~yl~KP~~ 836 (856)
..+++|++--+-..++...+ |-..|+|.|-.=..+
T Consensus 167 ---------------------~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da~~ 204 (213)
T cd02069 167 ---------------------GIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDASR 204 (213)
T ss_pred ---------------------CCCCeEEEEChhcCHHHHhhhhccccCCCceEecCHHH
Confidence 22567665555444444332 245799988754433
No 241
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.52 E-value=17 Score=38.90 Aligned_cols=114 Identities=14% Similarity=0.253 Sum_probs=74.8
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCce
Q 003018 563 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (856)
++++||++..........|.+.|-.+..++...+++..+... .++++++|-.+.... ...+..+.+... .+-+
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~--kpDLifldI~mp~~n---giefaeQvr~i~--~~v~ 74 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVF--KPDLIFLDIVMPYMN---GIEFAEQVRDIE--SAVP 74 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhc--CCCEEEEEeecCCcc---HHHHHHHHHHhh--ccCc
Confidence 689999999999999999999998888999999999888764 466777776654332 223444444432 1222
Q ss_pred EEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 643 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 643 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
++++++ -. +......+.....+++||+++..|..++.+...
T Consensus 75 iifIss-h~--eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k 115 (361)
T COG3947 75 IIFISS-HA--EYADDSFGMNLDDYLPKPVTPEKLNRAIDRRLK 115 (361)
T ss_pred EEEEec-ch--hhhhhhcccchHhhccCCCCHHHHHHHHHHHhc
Confidence 222222 11 111111112224789999999999999887763
No 242
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=75.24 E-value=11 Score=47.69 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=34.0
Q ss_pred CcccCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCC
Q 003018 556 SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 593 (856)
Q Consensus 556 ~~~~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~ 593 (856)
...+.|.+++++|+++..+.+...+|++||+.|..+.+
T Consensus 684 ~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~ 721 (894)
T PRK10618 684 EKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDE 721 (894)
T ss_pred cccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCc
Confidence 34578999999999999999999999999999988875
No 243
>PRK13557 histidine kinase; Provisional
Probab=74.64 E-value=32 Score=40.27 Aligned_cols=121 Identities=19% Similarity=0.254 Sum_probs=78.8
Q ss_pred cCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccc-cCCchhHHHHHHHhhcCC
Q 003018 559 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE-KDTSVSTLFVNNLRKLGC 637 (856)
Q Consensus 559 ~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~-~~~~~~~~~~~~~~~~~~ 637 (856)
..+.+++++++++.........++.+|+.+..+.+..+++..+... ..++++++|..... .+ .......++....
T Consensus 413 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~---~~~~~~~l~~~~~ 488 (540)
T PRK13557 413 GGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH-PEVDLLFTDLIMPGGMN---GVMLAREARRRQP 488 (540)
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCC---HHHHHHHHHHhCC
Confidence 4567899999999999999999999999999999999988876432 35788888776543 22 1223444443221
Q ss_pred CCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 638 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 638 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..+++++......... ......+...++.||+....+...+...+.
T Consensus 489 --~~~ii~~~~~~~~~~~-~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 489 --KIKVLLTTGYAEASIE-RTDAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred --CCcEEEEcCCCchhhh-hhhccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 2333333332221111 111122345689999999999998887664
No 244
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=72.81 E-value=29 Score=35.88 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=72.6
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhC-cE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLG-IQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g-~~-v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
++++++|+++..+......+..+| .. +..+.+..+++..+.. ..++++++|..+...++ ......++. ..
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlv~lDi~~~~~~G---~~~~~~l~~---~~ 73 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR--LKPDVVFLDIQMPRISG---LELVGMLDP---EH 73 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCH---HHHHHHhcc---cC
Confidence 478999999999999999999888 33 4567888888877654 35788999887654332 222333321 11
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.+.+++++.. ..... ..-..+...++.||+....+..++.++..
T Consensus 74 ~~~ii~vt~~-~~~~~--~a~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 74 MPYIVFVTAF-DEYAI--KAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred CCEEEEEecc-HHHHH--HHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 2344444332 21111 11112455789999999999998887764
No 245
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=71.56 E-value=35 Score=35.17 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=74.5
Q ss_pred EEEEeCCchhhhHHHHHHHHHhC-cEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 563 KALVVDPRPIRAKVSRYHIQRLG-IQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~g-~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
+++++|+.+..+.-.+..|...+ ++|. .+.+..+++.... ...++.+++|..+...+. ......+++.. ..
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~--~~~pdvvl~Dl~mP~~~G---~e~~~~l~~~~--p~ 74 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAR--ELKPDVVLLDLSMPGMDG---LEALKQLRARG--PD 74 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhh--hcCCCEEEEcCCCCCCCh---HHHHHHHHHHC--CC
Confidence 58999999999988888888776 6644 5566888887633 356788888866554332 22344444221 22
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.++++++........... -..|...++.|......+..+++.++.
T Consensus 75 ~~vvvlt~~~~~~~v~~a-l~~Ga~Gyl~K~~~~~~l~~ai~~v~~ 119 (211)
T COG2197 75 IKVVVLTAHDDPAYVIRA-LRAGADGYLLKDASPEELVEAIRAVAA 119 (211)
T ss_pred CcEEEEeccCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 355555443332222111 122566899999999999999988764
No 246
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=70.24 E-value=50 Score=29.95 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=60.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCH-HHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG-KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g-~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
.++.++|.++... ..+...|+.+...+-. .+.++.+ .-...+.+++...-. ..-+.++..+|++.
T Consensus 22 ~~vvvid~d~~~~----~~~~~~~~~~i~gd~~~~~~l~~a-~i~~a~~vv~~~~~d-~~n~~~~~~~r~~~-------- 87 (116)
T PF02254_consen 22 IDVVVIDRDPERV----EELREEGVEVIYGDATDPEVLERA-GIEKADAVVILTDDD-EENLLIALLARELN-------- 87 (116)
T ss_dssp SEEEEEESSHHHH----HHHHHTTSEEEES-TTSHHHHHHT-TGGCESEEEEESSSH-HHHHHHHHHHHHHT--------
T ss_pred CEEEEEECCcHHH----HHHHhcccccccccchhhhHHhhc-CccccCEEEEccCCH-HHHHHHHHHHHHHC--------
Confidence 4799999998763 3445567887775544 3445554 345689888877533 44466777888742
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
+..+|++...+ .+......++|+|..+.
T Consensus 88 --------------~~~~ii~~~~~--~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 88 --------------PDIRIIARVND--PENAELLRQAGADHVIS 115 (116)
T ss_dssp --------------TTSEEEEEESS--HHHHHHHHHTT-SEEEE
T ss_pred --------------CCCeEEEEECC--HHHHHHHHHCCcCEEEC
Confidence 34678876643 55566677899987764
No 247
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=69.86 E-value=24 Score=40.81 Aligned_cols=116 Identities=12% Similarity=0.169 Sum_probs=70.8
Q ss_pred EEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccC--CchhHHHHHHHhhcCCCCCc
Q 003018 564 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 564 ~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 641 (856)
++++|+++..+......+ .|+.+..+.+..+++..+... .++++++|..+.... .......+..++... ...
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~--~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~--~~~ 74 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH--EPAVVTLDLGLPPDADGASEGLAALQQILAIA--PDT 74 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhC--CCC
Confidence 468888888777777667 789999999999999888653 578888887654321 112223344444322 123
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
++++++...+....... -..+...++.||+....+...+..++.
T Consensus 75 piI~lt~~~~~~~~~~a-~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 75 KVIVITGNDDRENAVKA-IGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred CEEEEecCCCHHHHHHH-HHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 34444332221111111 112556799999999998887766553
No 248
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=68.99 E-value=1.6e+02 Score=31.14 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=18.5
Q ss_pred hcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhc
Q 003018 352 DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKF 390 (856)
Q Consensus 352 ~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKf 390 (856)
..+....+...-.++. ....+|.+.|.+.++..+.+
T Consensus 174 ~~~~~~~v~sa~~l~~---~~~~~i~~~l~~~~~~~v~~ 209 (246)
T TIGR03321 174 DSGNPVLVRSAFELPE---EQREQIRDTIRETLGPEIRL 209 (246)
T ss_pred CCCCceEEEecCCCCH---HHHHHHHHHHHHHHCCCeeE
Confidence 4454444443332221 34567777777776555444
No 249
>PLN03237 DNA topoisomerase 2; Provisional
Probab=68.96 E-value=8.2 Score=50.23 Aligned_cols=53 Identities=25% Similarity=0.512 Sum_probs=33.0
Q ss_pred EEEEEecCCCCChhhHh--------hhcCccccCC---CCCCCCCCc-ccchHHHHHHHHHHcCC
Q 003018 461 IVSVEDTGQGIPLEAQS--------RIFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGRMKG 513 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~--------~iF~pF~q~d---~s~~~~~~G-tGLGLsI~k~lv~~mgG 513 (856)
.|+|.|+|.|||-+..+ -||.-....+ .+..+..|| .|.|.+.|.-|-+.+--
T Consensus 112 sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~V 176 (1465)
T PLN03237 112 LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVI 176 (1465)
T ss_pred EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEE
Confidence 48999999999986432 2444433221 111222344 69999999888766543
No 250
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=67.16 E-value=35 Score=33.73 Aligned_cols=113 Identities=11% Similarity=0.079 Sum_probs=70.4
Q ss_pred EEEEeCCchhhhHHHHHHHHHh-CcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 563 KALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~-g~~-v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
+++++|+++.........+... |+. +..+++..+++..+.. ..++++++|......+. ..++..++. .
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g---~~~~~~l~~-----~ 72 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--RGVQVCICDISMPDISG---LELLSQLPK-----G 72 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCH---HHHHHHHcc-----C
Confidence 6899999998888888888654 665 5677888888887753 34688888765433321 223333321 2
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.++++++........... -..+...++.||+....+...+..++.
T Consensus 73 ~~vi~~s~~~~~~~~~~~-~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 73 MATIMLSVHDSPALVEQA-LNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred CCEEEEECCCCHHHHHHH-HHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 334444332221111111 112566799999999999999887764
No 251
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=66.67 E-value=44 Score=33.26 Aligned_cols=118 Identities=12% Similarity=0.194 Sum_probs=72.9
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHh-CcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~-g~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
..+++++|+++.........+... ++.+. .+.+..++...+.. ..++++++|......+ ...+...++...
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~l~~~~-- 75 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--RPVDLIIMDIDLPGTD---GFTFLKRIKQIQ-- 75 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHHhC--
Confidence 357899999999888888888877 57765 57777777776543 4578888887654332 222344444321
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
...+++++.......... .....+...++.||+....+...++..+.
T Consensus 76 ~~~~ii~ls~~~~~~~~~-~~~~~g~~~~l~kp~~~~~l~~~i~~~l~ 122 (210)
T PRK09935 76 STVKVLFLSSKSECFYAG-RAIQAGANGFVSKCNDQNDIFHAVQMILS 122 (210)
T ss_pred CCCcEEEEECCCcHHHHH-HHHHcCCCEEEeCCCCHHHHHHHHHHHHc
Confidence 123344443322211111 11122556789999999999998887764
No 252
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=66.43 E-value=32 Score=33.70 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=72.2
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++.........+...|+.+..+.+..+++..+.. ..++++++|......+ .......++... ...
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~ii~d~~~~~~~---~~~~~~~l~~~~--~~~ 76 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG--LRFGCVVTDVRMPGID---GIELLRRLKARG--SPL 76 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc--CCCCEEEEeCCCCCCc---HHHHHHHHHhcC--CCC
Confidence 578999999999988999999999999998888887766543 3467788776543322 122334444322 123
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.++++............ ...+...++.||+....+...+...+.
T Consensus 77 ~ii~l~~~~~~~~~~~~-~~~g~~~~l~~p~~~~~l~~~l~~~~~ 120 (202)
T PRK09390 77 PVIVMTGHGDVPLAVEA-MKLGAVDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred CEEEEECCCCHHHHHHH-HHcChHHHhhCCCCHHHHHHHHHHHHH
Confidence 33444332211111100 112345678899998888887776654
No 253
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=65.88 E-value=29 Score=29.00 Aligned_cols=110 Identities=19% Similarity=0.258 Sum_probs=62.2
Q ss_pred EeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCceEEE
Q 003018 566 VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 645 (856)
Q Consensus 566 vvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 645 (856)
++++++.........+...|+.+..+.+...++..+.. ..++.++++........ ......++.. .....+++
T Consensus 2 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~~~~~~~~~~---~~~~~~l~~~--~~~~~~i~ 74 (113)
T cd00156 2 IVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE--EKPDLILLDIMMPGMDG---LELLRRIRKR--GPDIPIIF 74 (113)
T ss_pred eecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh--CCCCEEEEecCCCCCch---HHHHHHHHHh--CCCCCEEE
Confidence 56777777777888888889999888888888876654 34677777655433221 2233344333 11223333
Q ss_pred EeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHH
Q 003018 646 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 683 (856)
Q Consensus 646 l~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~ 683 (856)
+............ ...+...++.+|+....+...+..
T Consensus 75 ~~~~~~~~~~~~~-~~~~~~~~i~~p~~~~~l~~~l~~ 111 (113)
T cd00156 75 LTAHGDDEDAVEA-LKAGADDYLTKPFSPEELLARIRA 111 (113)
T ss_pred EEecccHHHHHHH-HHcChhhHccCCCCHHHHHHHHHh
Confidence 3222111100000 112344677889888877776653
No 254
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=65.35 E-value=41 Score=32.68 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=71.9
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCce
Q 003018 563 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (856)
..|+||++.........-+.+-|+.|..+.+..+++....... +....+|..+-. .....++..++.... ...
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~--PayAvvDlkL~~---gsGL~~i~~lr~~~~--d~r 83 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAP--PAYAVVDLKLGD---GSGLAVIEALRERRA--DMR 83 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCC--CceEEEEeeecC---CCchHHHHHHHhcCC--cce
Confidence 5789999999999999999999999999999999998877644 334445544333 222334555554322 234
Q ss_pred EEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHH
Q 003018 643 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 684 (856)
Q Consensus 643 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~ 684 (856)
+++++.-.+-..+.... -.+...++.||-....+...+.+.
T Consensus 84 ivvLTGy~sIATAV~Av-KlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 84 IVVLTGYASIATAVEAV-KLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred EEEEecchHHHHHHHHH-HhhhhhhcCCCCChHHHHHHHhhc
Confidence 44443321111111110 013447899999988888877654
No 255
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=64.39 E-value=11 Score=37.97 Aligned_cols=66 Identities=23% Similarity=0.338 Sum_probs=44.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCE---EEEEcCHHHHHHHh-CCCCCccEEEEeCCCCCCCH---HHHHHHHH
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAA---VVCVERGKKATELL-MPPHQFDACFMDIQMPEMDG---FEATKIIR 777 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~---v~~a~~g~eA~~~l-~~~~~~DlilmDi~MP~mdG---~e~~~~IR 777 (856)
+++..||-|+.....++.-+++.|.. .+...|...++... .....||+||+|- |-..+ .+++..|.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP--PY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP--PYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC--CcccchHHHHHHHHHH
Confidence 58999999999999999999998843 34456767777655 2356899999994 54444 34555554
No 256
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=64.13 E-value=0.66 Score=56.85 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=14.2
Q ss_pred Cc-ccchHHHHHHHHHHc
Q 003018 495 GG-TGIGLSISKYLVGRM 511 (856)
Q Consensus 495 ~G-tGLGLsI~k~lv~~m 511 (856)
|| .|.|++.|..|-+.+
T Consensus 247 GGLHGVG~SVVNALS~~l 264 (903)
T PTZ00109 247 SGLHGVGLSVVNALSSFL 264 (903)
T ss_pred CcCCCcceeeeeeccCeE
Confidence 45 799999999888776
No 257
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=63.06 E-value=50 Score=30.20 Aligned_cols=33 Identities=33% Similarity=0.298 Sum_probs=30.1
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHH
Q 003018 563 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 595 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~ 595 (856)
|+|++|++..|+.-....|.-.|.+++.+++..
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~ 33 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSD 33 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHH
Confidence 589999999999999999999999999998644
No 258
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=61.63 E-value=28 Score=33.53 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=44.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEc----CHHHHHHHhCCCCCccEEEEeCCCCC
Q 003018 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVE----RGKKATELLMPPHQFDACFMDIQMPE 766 (856)
Q Consensus 707 ~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~----~g~eA~~~l~~~~~~DlilmDi~MP~ 766 (856)
+.|++|+|+..+....+-+..+|.+.|+.|..++ +.++++. .-|+|+.-.--|.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~------~ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH------DADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh------hCCEEEEecCCCC
Confidence 5689999999999999999999999999999998 5454432 3599998886663
No 259
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=60.54 E-value=76 Score=32.81 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=55.7
Q ss_pred HHHHHHhh-cCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCC-------CCCCCHHHHHHHHHhhcccccccccccccch
Q 003018 724 VAAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQ-------MPEMDGFEATKIIREMEHNFNNRIRRGEVSI 794 (856)
Q Consensus 724 ~l~~~L~~-~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~-------MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~ 794 (856)
.+...+++ .|..+. .+.+.+++.... ...+|+|..... .+...+++++++|++.
T Consensus 109 ~~i~~~~~~~~i~vi~~v~t~ee~~~a~--~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~--------------- 171 (221)
T PRK01130 109 ELVKRIKEYPGQLLMADCSTLEEGLAAQ--KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA--------------- 171 (221)
T ss_pred HHHHHHHhCCCCeEEEeCCCHHHHHHHH--HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh---------------
Confidence 34444555 566554 456677776554 245888855321 1223447888888862
Q ss_pred hhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 795 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 795 ~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
.++||++..+-...++..++++.|+|+++.
T Consensus 172 --------~~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 172 --------VGCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred --------CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 258999888777899999999999998854
No 260
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=60.50 E-value=24 Score=37.76 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=42.2
Q ss_pred CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecC------CCHHhHHHHHHcCCCeEEeCCCCHHHHH
Q 003018 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD------VIQATYEECLRSGMDGYVSKPFEAEQLY 841 (856)
Q Consensus 768 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~------~~~~~~~~~~~aG~d~yl~KP~~~~~L~ 841 (856)
+.++.++++|+. ..++|+++||=. ..+...++|.++|+|+.|.-.+..++..
T Consensus 75 ~~~~~~~~~r~~----------------------~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~ 132 (258)
T PRK13111 75 DVFELVREIREK----------------------DPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAE 132 (258)
T ss_pred HHHHHHHHHHhc----------------------CCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHH
Confidence 457788888842 246899999843 4456788999999999999877777666
Q ss_pred HHHhh
Q 003018 842 REVSR 846 (856)
Q Consensus 842 ~~l~~ 846 (856)
..+.+
T Consensus 133 ~~~~~ 137 (258)
T PRK13111 133 ELRAA 137 (258)
T ss_pred HHHHH
Confidence 55543
No 261
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=60.01 E-value=30 Score=35.97 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=42.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCE--EEEEc--CHHHHHHHhCCCCCccEEEEeCCCC
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAA--VVCVE--RGKKATELLMPPHQFDACFMDIQMP 765 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~--v~~a~--~g~eA~~~l~~~~~~DlilmDi~MP 765 (856)
-+|.-+|-|+...+.+++.+++.|.. |.... +..+.++.. ....||+||+|..=+
T Consensus 85 g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-~~~~fDliFIDadK~ 143 (219)
T COG4122 85 GRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-LDGSFDLVFIDADKA 143 (219)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-cCCCccEEEEeCChh
Confidence 38999999999999999999999863 45544 555555542 247899999998643
No 262
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=59.83 E-value=41 Score=36.31 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=51.6
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCC
Q 003018 735 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814 (856)
Q Consensus 735 ~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 814 (856)
..+.+.+-++|.+.+. ..+|+|++| +|+.-+=-++.+.+|+.. ++ .+|..++..
T Consensus 191 IeVEv~tleea~ea~~--~GaDiI~lD-n~~~e~l~~~v~~l~~~~----------------------~~-~~leasGGI 244 (277)
T TIGR01334 191 ITVEADTIEQALTVLQ--ASPDILQLD-KFTPQQLHHLHERLKFFD----------------------HI-PTLAAAGGI 244 (277)
T ss_pred EEEECCCHHHHHHHHH--cCcCEEEEC-CCCHHHHHHHHHHHhccC----------------------CC-EEEEEECCC
Confidence 4456789999999884 458999999 455555555555555311 12 368899999
Q ss_pred CHHhHHHHHHcCCCeEE
Q 003018 815 IQATYEECLRSGMDGYV 831 (856)
Q Consensus 815 ~~~~~~~~~~aG~d~yl 831 (856)
..+...+..+.|+|-+.
T Consensus 245 ~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 245 NPENIADYIEAGIDLFI 261 (277)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998653
No 263
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=58.84 E-value=91 Score=33.29 Aligned_cols=99 Identities=15% Similarity=0.039 Sum_probs=67.4
Q ss_pred HHHHHhhcCCE--EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCC
Q 003018 725 AAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 802 (856)
Q Consensus 725 l~~~L~~~g~~--v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~ 802 (856)
++..|+.-... +........+.+.+. ...||.|++|++--.+|--++...||..+.
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~~~e~~a-~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~--------------------- 67 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPITTEVLG-LAGFDWLVLDGEHAPNDVSTFIPQLMALKG--------------------- 67 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHH-hcCCCEEEEccccCCCCHHHHHHHHHHHhh---------------------
Confidence 55666553221 223344456667664 346999999999999998888888887432
Q ss_pred CCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCC-CHHHHHHHHh
Q 003018 803 FHVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVS 845 (856)
Q Consensus 803 ~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~-~~~~L~~~l~ 845 (856)
..++.++=....+.....+++++|+++.+.-=+ +.++....++
T Consensus 68 ~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 68 SASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred cCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHH
Confidence 224445555667889999999999999987655 5566666554
No 264
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=58.74 E-value=1.8e+02 Score=28.13 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=77.3
Q ss_pred CeEEEE----cCCHHHHHHHHHHHhhcCCEEEE---EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccc
Q 003018 710 RKILIV----DDNNVNLKVAAAGLKRYGAAVVC---VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 782 (856)
Q Consensus 710 ~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~---a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~ 782 (856)
.||||. |-+..-.+++...|+..|++|+. ..+..|++.... .+..|+|.+... .-...+++..+++.-.+
T Consensus 13 prvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~-~~dv~vIgvSsl--~g~h~~l~~~lve~lre 89 (143)
T COG2185 13 PRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAV-EEDVDVIGVSSL--DGGHLTLVPGLVEALRE 89 (143)
T ss_pred ceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHH-hcCCCEEEEEec--cchHHHHHHHHHHHHHH
Confidence 456553 66777789999999999999995 578899998874 467898877642 22334555555542111
Q ss_pred ccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhh
Q 003018 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847 (856)
Q Consensus 783 ~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 847 (856)
.| ..++. +.+-+.-..++..+..+.|++.++.--....+....|..-
T Consensus 90 ------~G-----------~~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~ 136 (143)
T COG2185 90 ------AG-----------VEDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTR 136 (143)
T ss_pred ------hC-----------CcceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHH
Confidence 01 12332 3445555567777778899999998877777666555443
No 265
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=58.71 E-value=1.3e+02 Score=30.68 Aligned_cols=91 Identities=21% Similarity=0.210 Sum_probs=58.0
Q ss_pred hcCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCCCC--------CHHHHHHHHHhhcccccccccccccchhhhccCC
Q 003018 731 RYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMPEM--------DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS 801 (856)
Q Consensus 731 ~~g~~v~~-a~~g~eA~~~l~~~~~~DlilmDi~MP~m--------dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~ 801 (856)
..|..+-. +.+-.++.+... ...|+|...--.|.. .|++.++++++.
T Consensus 102 ~~~~~~g~~~~t~~e~~~a~~--~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------- 157 (212)
T PRK00043 102 GPDAIIGLSTHTLEEAAAALA--AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAA---------------------- 157 (212)
T ss_pred CCCCEEEEeCCCHHHHHHHhH--cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh----------------------
Confidence 34444333 345566666542 468999876545532 468888888863
Q ss_pred CCCCcEEEEecCCCHHhHHHHHHcCCCeEEe-----CCCCHHHHHHHHhh
Q 003018 802 NFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVSR 846 (856)
Q Consensus 802 ~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L~~~l~~ 846 (856)
..++||++.-+ ...+...+++++|++++.. +.-++.+..+.+.+
T Consensus 158 ~~~~~v~a~GG-I~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~ 206 (212)
T PRK00043 158 VGDIPIVAIGG-ITPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLA 206 (212)
T ss_pred cCCCCEEEECC-cCHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHH
Confidence 12378886654 5788899999999999974 44455555444443
No 266
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=56.57 E-value=83 Score=38.79 Aligned_cols=110 Identities=8% Similarity=0.064 Sum_probs=74.2
Q ss_pred cCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCC--CHHHHHHHHHhhccccccccccc
Q 003018 716 DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEM--DGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 716 dDn~~n~~~l~~~L~~~g~~v~~a---~~g~eA~~~l~~~~~~DlilmDi~MP~m--dG~e~~~~IR~~~~~~~~~~~~g 790 (856)
|.+..-...+..+|+..|++|+.- .+.+++++... .+.+|+|.+...+... ..-++++.+|+..
T Consensus 593 d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~-~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G---------- 661 (714)
T PRK09426 593 DGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAV-ENDVHVVGVSSLAAGHKTLVPALIEALKKLG---------- 661 (714)
T ss_pred cchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHH-HcCCCEEEEeccchhhHHHHHHHHHHHHhcC----------
Confidence 344555677889999999999743 34667777775 4678998876555332 2345666666521
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
..+++|+ +-+...+++.+.+.++|+|+|+..=.+..+....+.+.+
T Consensus 662 -----------~~~v~vl-~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l 707 (714)
T PRK09426 662 -----------REDIMVV-VGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELL 707 (714)
T ss_pred -----------CCCcEEE-EeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHH
Confidence 1133333 444434556677889999999999999988888877765
No 267
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=56.52 E-value=92 Score=32.34 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=46.7
Q ss_pred HHHHHHhCCCCCcc-EEEEeCCCCCC-CH--HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHh
Q 003018 743 KKATELLMPPHQFD-ACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818 (856)
Q Consensus 743 ~eA~~~l~~~~~~D-lilmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~ 818 (856)
.+.++.+. ...+| ++++|+.--++ .| +++++++++. ..+||++--+-.+.++
T Consensus 148 ~~~~~~~~-~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~-----------------------~~ipvia~GGi~~~~d 203 (230)
T TIGR00007 148 EELAKRLE-ELGLEGIIYTDISRDGTLSGPNFELTKELVKA-----------------------VNVPVIASGGVSSIDD 203 (230)
T ss_pred HHHHHHHH-hCCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHH
Confidence 34444453 34567 77788854322 22 6777888752 3589999888889999
Q ss_pred HHHHHHcCCCeEEe
Q 003018 819 YEECLRSGMDGYVS 832 (856)
Q Consensus 819 ~~~~~~aG~d~yl~ 832 (856)
..++++.|+++++.
T Consensus 204 i~~~~~~Gadgv~i 217 (230)
T TIGR00007 204 LIALKKLGVYGVIV 217 (230)
T ss_pred HHHHHHCCCCEEEE
Confidence 99999999999875
No 268
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=56.25 E-value=85 Score=31.99 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=61.2
Q ss_pred eEEEE----cCCHHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCC-CH-HHHHHHHHhhcc
Q 003018 711 KILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM-DG-FEATKIIREMEH 781 (856)
Q Consensus 711 ~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eA~~~l~~~~~~DlilmDi~MP~m-dG-~e~~~~IR~~~~ 781 (856)
+|++. |.+..-..++..+|+..||+|.... ..++-++.+. ...||+|.+-+.|+.. .. -+..+.+|+..
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~-~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~- 163 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK-KEKPLMLTGSALMTTTMYGQKDINDKLKEEG- 163 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH-HcCCCEEEEccccccCHHHHHHHHHHHHHcC-
Confidence 55554 4566667888999999999999643 3455566664 5789999999877643 22 23344555421
Q ss_pred cccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 782 ~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
....++|+ +-+..... .-|.+.|+|.|-.
T Consensus 164 -------------------~~~~v~i~-vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 164 -------------------YRDSVKFM-VGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred -------------------CCCCCEEE-EEChhcCH--HHHHHhCCcEEeC
Confidence 12235554 44444422 3466889999864
No 269
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=54.85 E-value=37 Score=34.98 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=42.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhCCC---CCccEEEEeCC
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMPP---HQFDACFMDIQ 763 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~--~v~-~a~~g~eA~~~l~~~---~~~DlilmDi~ 763 (856)
+.+|.-+|-|+....+++..+++.|+ .|. ...++.+.+..+... ..||+||+|..
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 35899999999999999999999886 344 346777777765322 36999999985
No 270
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=54.53 E-value=2.2e+02 Score=30.42 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=65.9
Q ss_pred EEEcC-CHHHHHHHHHHHhhcCCEE-EEEcCHHHHHHHhCCCCCccEEEEe---CCCCCCCHHHHHHHHHhhcccccccc
Q 003018 713 LIVDD-NNVNLKVAAAGLKRYGAAV-VCVERGKKATELLMPPHQFDACFMD---IQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 713 LvVdD-n~~n~~~l~~~L~~~g~~v-~~a~~g~eA~~~l~~~~~~DlilmD---i~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
|++.+ .+.....+....+.+|..+ ..+.+..|+..... ..+|+|-.. ++--.-| ++.+.++...-+
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~--~gadiIgin~rdl~~~~~d-~~~~~~l~~~~p------ 209 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALK--LGAPLIGINNRNLKTFEVD-LETTERLAPLIP------ 209 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH--cCCCEEEECCCCcccccCC-HHHHHHHHHhCC------
Confidence 44444 3444555556666788764 46778887766552 357776543 1122233 666777765211
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEE-----eCCCCHHHH
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQL 840 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L 840 (856)
...|+|+.++-...++..++.++|+|+++ .||-++.+.
T Consensus 210 ---------------~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~ 252 (260)
T PRK00278 210 ---------------SDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAA 252 (260)
T ss_pred ---------------CCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHH
Confidence 13589999999999999999999999975 455454433
No 271
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=54.20 E-value=1.7e+02 Score=29.51 Aligned_cols=96 Identities=21% Similarity=0.232 Sum_probs=60.1
Q ss_pred eEEEEcC--CHHHHHHHHHHHhhcCCEEE----EEcCHHHHHHHhCCCCCccEEEEeCC-----CCCCCHHHHHHHHHhh
Q 003018 711 KILIVDD--NNVNLKVAAAGLKRYGAAVV----CVERGKKATELLMPPHQFDACFMDIQ-----MPEMDGFEATKIIREM 779 (856)
Q Consensus 711 ~ILvVdD--n~~n~~~l~~~L~~~g~~v~----~a~~g~eA~~~l~~~~~~DlilmDi~-----MP~mdG~e~~~~IR~~ 779 (856)
..+++.+ .+.....+....++.|..+. .+.+..++.+.+. ...|.|..... .....+.+.++++++.
T Consensus 79 d~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~--~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~ 156 (202)
T cd04726 79 DIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK--LGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL 156 (202)
T ss_pred CEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH--CCCCEEEEcCcccccccCCCCCHHHHHHHHhh
Confidence 3444433 23233445566677787654 4557788877442 46788877421 1124567777777752
Q ss_pred cccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 780 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 780 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
.++||+ +++....+...+++++|+|.++.
T Consensus 157 -----------------------~~~~i~-~~GGI~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 157 -----------------------LGVKVA-VAGGITPDTLPEFKKAGADIVIV 185 (202)
T ss_pred -----------------------cCCCEE-EECCcCHHHHHHHHhcCCCEEEE
Confidence 246665 56666789999999999998864
No 272
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=54.00 E-value=25 Score=41.80 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=32.8
Q ss_pred eEEEEEEecCCCCChhhHhhhcCccccCC------CCCCCCCCcccchHH
Q 003018 459 NLIVSVEDTGQGIPLEAQSRIFTPFMQVG------PSISRTHGGTGIGLS 502 (856)
Q Consensus 459 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~d------~s~~~~~~GtGLGLs 502 (856)
.+.|.|.|+|.|+..+++..+-++|++.+ ....+.+|--|=.|+
T Consensus 49 t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGfRGeALa 98 (1142)
T KOG1977|consen 49 TFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGFRGEALA 98 (1142)
T ss_pred eeEEEEEecCCCccHHHHHHHHhhhhhhhceeccccccccccccchhhhh
Confidence 45799999999999999999998887653 234556665555554
No 273
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=53.98 E-value=1.3e+02 Score=32.42 Aligned_cols=99 Identities=11% Similarity=0.091 Sum_probs=65.6
Q ss_pred HHHHHhhcCCE--EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCC
Q 003018 725 AAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 802 (856)
Q Consensus 725 l~~~L~~~g~~--v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~ 802 (856)
++..|+.-... ..+......+.+.+.. ..||.|++|++--..|--++...||....
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~-~GfD~v~iD~EHg~~~~~~l~~~i~a~~~--------------------- 66 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAAT-SGYDWLLIDGEHAPNTIQDLYHQLQAIAP--------------------- 66 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHH-cCCCEEEEccccCCCCHHHHHHHHHHHHh---------------------
Confidence 45555542221 2223344556666643 45999999999988888888888887532
Q ss_pred CCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCH-HHHHHHHh
Q 003018 803 FHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA-EQLYREVS 845 (856)
Q Consensus 803 ~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~-~~L~~~l~ 845 (856)
..++.++=....+.....+++++|+++.+.-=++- ++..+.++
T Consensus 67 ~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~ 110 (267)
T PRK10128 67 YASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_pred cCCCeEEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHH
Confidence 12344445566778899999999999999877754 45554443
No 274
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=53.77 E-value=1.5e+02 Score=26.23 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=44.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEE------cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCV------ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a------~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~ 779 (856)
+||||-..+.+...++..++++|+..... ......++... ...|+|++=.. .-+-.++..+++.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i--~~aD~VIv~t~---~vsH~~~~~vk~~ 70 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKI--KKADLVIVFTD---YVSHNAMWKVKKA 70 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhc--CCCCEEEEEeC---CcChHHHHHHHHH
Confidence 48999998888999999999999998888 22222244332 35698876432 3456666777653
No 275
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=52.78 E-value=1.5e+02 Score=31.39 Aligned_cols=85 Identities=15% Similarity=0.058 Sum_probs=61.4
Q ss_pred EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHh
Q 003018 739 VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818 (856)
Q Consensus 739 a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~ 818 (856)
......+.+++. ...||.|++|++--.+|--++...||..+. ..++.++=....+...
T Consensus 19 ~~~sp~~~e~~a-~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~---------------------~g~~~~VRvp~~~~~~ 76 (249)
T TIGR03239 19 ALGNPITTEVLG-LAGFDWLLLDGEHAPNDVLTFIPQLMALKG---------------------SASAPVVRPPWNEPVI 76 (249)
T ss_pred cCCCcHHHHHHH-hcCCCEEEEecccCCCCHHHHHHHHHHHhh---------------------cCCCcEEECCCCCHHH
Confidence 344456667664 345999999999999998888888887432 1234444556678899
Q ss_pred HHHHHHcCCCeEEeCCC-CHHHHHHHHh
Q 003018 819 YEECLRSGMDGYVSKPF-EAEQLYREVS 845 (856)
Q Consensus 819 ~~~~~~aG~d~yl~KP~-~~~~L~~~l~ 845 (856)
..+++++|+++.+.-=+ +.++..++++
T Consensus 77 i~r~LD~Ga~gIivP~v~taeea~~~v~ 104 (249)
T TIGR03239 77 IKRLLDIGFYNFLIPFVESAEEAERAVA 104 (249)
T ss_pred HHHHhcCCCCEEEecCcCCHHHHHHHHH
Confidence 99999999999987655 5566665554
No 276
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=52.59 E-value=23 Score=35.81 Aligned_cols=52 Identities=23% Similarity=0.235 Sum_probs=41.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeC
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 762 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi 762 (856)
++||++|...-.---+..+|+..|++|....|....++.+. ...||.|++.-
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~-~~~pd~iviSP 53 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIE-ALKPDAIVISP 53 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHh-hcCCCEEEEcC
Confidence 47999999999999999999999999998888743344442 35689999875
No 277
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=51.72 E-value=1.2e+02 Score=29.66 Aligned_cols=118 Identities=12% Similarity=0.115 Sum_probs=70.6
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhC-cE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLG-IQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g-~~-v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
..+++++++++..+......+..++ +. +..+.+...++..... ..++.+++|......+ .......++...
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---~~~~~~~l~~~~-- 75 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ--LEPDIVILDLGLPGMN---GLDVIPQLHQRW-- 75 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHHHC--
Confidence 4679999999999988888888764 55 3467777777765543 3467778776543322 122344444322
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
...++++++........... ...+...++.||.....+...+...+.
T Consensus 76 ~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 122 (211)
T PRK15369 76 PAMNILVLTARQEEHMASRT-LAAGALGYVLKKSPQQILLAAIQTVAV 122 (211)
T ss_pred CCCcEEEEeCCCCHHHHHHH-HHhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 12334444332221111111 112456789999999999888887653
No 278
>PRK10651 transcriptional regulator NarL; Provisional
Probab=51.71 E-value=1.2e+02 Score=30.04 Aligned_cols=118 Identities=17% Similarity=0.173 Sum_probs=71.9
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHh-CcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~-g~~-v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
..+++++|+++.........+... ++. +..+.+..+++..+.. ..++.+++|....... .......++...
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~l~~~~---~~~~~~~l~~~~-- 78 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMN---GLETLDKLREKS-- 78 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCc---HHHHHHHHHHhC--
Confidence 357899999999888888888765 555 4467888888877654 3467788876554332 122334444322
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
...+++++............ -..+...++.||+....+...+..++.
T Consensus 79 ~~~~vi~l~~~~~~~~~~~~-~~~g~~~~i~k~~~~~~l~~~i~~~~~ 125 (216)
T PRK10651 79 LSGRIVVFSVSNHEEDVVTA-LKRGADGYLLKDMEPEDLLKALQQAAA 125 (216)
T ss_pred CCCcEEEEeCCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 12334444332221111111 112456789999999999999888764
No 279
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=51.70 E-value=1.8e+02 Score=30.05 Aligned_cols=82 Identities=17% Similarity=0.138 Sum_probs=53.9
Q ss_pred HHHhhcC-CEE-EEEcCHHHHHHHhCCCCCccEEEEeCC-------CCCCCHHHHHHHHHhhcccccccccccccchhhh
Q 003018 727 AGLKRYG-AAV-VCVERGKKATELLMPPHQFDACFMDIQ-------MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAY 797 (856)
Q Consensus 727 ~~L~~~g-~~v-~~a~~g~eA~~~l~~~~~~DlilmDi~-------MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 797 (856)
..+++.| ..+ ..+.+..++..... ..+|+|..-.. .+...+++.++++|+.
T Consensus 116 ~~~~~~g~~~iiv~v~t~~ea~~a~~--~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~------------------ 175 (219)
T cd04729 116 KRIHEEYNCLLMADISTLEEALNAAK--LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA------------------ 175 (219)
T ss_pred HHHHHHhCCeEEEECCCHHHHHHHHH--cCCCEEEccCccccccccCCCCCCHHHHHHHHHh------------------
Confidence 3344444 443 34567777766553 45888754211 1223457888888862
Q ss_pred ccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeC
Q 003018 798 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833 (856)
Q Consensus 798 ~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~K 833 (856)
..+||++..+-.+.++..++++.|+|+.+.-
T Consensus 176 -----~~ipvia~GGI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 176 -----LGIPVIAEGRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred -----cCCCEEEeCCCCCHHHHHHHHHCCCCEEEEc
Confidence 1589998777778899999999999998753
No 280
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=51.62 E-value=93 Score=32.70 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=47.6
Q ss_pred HHHHHHhCCCCCccEEEEeCCCCCC-CH--HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhH
Q 003018 743 KKATELLMPPHQFDACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819 (856)
Q Consensus 743 ~eA~~~l~~~~~~DlilmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~ 819 (856)
.+.++.+....--.+|++|+..-++ .| +++++++++. .++||++--+-.+.++.
T Consensus 151 ~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~-----------------------~~ipvi~~GGi~s~edi 207 (234)
T PRK13587 151 FSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKA-----------------------TTIPVIASGGIRHQQDI 207 (234)
T ss_pred HHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHHH
Confidence 3444444322223699999976543 33 6667777652 35899999888899999
Q ss_pred HHHHHcCCCeEEe
Q 003018 820 EECLRSGMDGYVS 832 (856)
Q Consensus 820 ~~~~~aG~d~yl~ 832 (856)
.++++.|+++.+.
T Consensus 208 ~~l~~~G~~~viv 220 (234)
T PRK13587 208 QRLASLNVHAAII 220 (234)
T ss_pred HHHHHcCCCEEEE
Confidence 9999999999875
No 281
>PLN02591 tryptophan synthase
Probab=51.58 E-value=40 Score=35.81 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=34.0
Q ss_pred CCCcEEEEecCC------CHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhh
Q 003018 803 FHVPILAMTADV------IQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847 (856)
Q Consensus 803 ~~~pIIalTa~~------~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 847 (856)
.++|+|+||=.. .+....+|.++|+|+.|.-.+..++......+.
T Consensus 77 ~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~ 127 (250)
T PLN02591 77 LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEA 127 (250)
T ss_pred CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 358988888643 355678899999999999988877776555443
No 282
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=51.55 E-value=14 Score=48.18 Aligned_cols=51 Identities=25% Similarity=0.558 Sum_probs=32.1
Q ss_pred EEEEEecCCCCChhhHh--------hhcCccccCC---CCCCCCCCc-ccchHHHHHHHHHHc
Q 003018 461 IVSVEDTGQGIPLEAQS--------RIFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGRM 511 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~--------~iF~pF~q~d---~s~~~~~~G-tGLGLsI~k~lv~~m 511 (856)
.|+|.|+|.|||-+..+ -||.-....+ ....+..|| .|.|.+.|.-+-+.+
T Consensus 95 ~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~f 157 (1388)
T PTZ00108 95 EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTKF 157 (1388)
T ss_pred eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCccccccccceE
Confidence 48999999999986532 2454433221 122222344 699999888877654
No 283
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=50.90 E-value=63 Score=32.72 Aligned_cols=117 Identities=17% Similarity=0.172 Sum_probs=70.3
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEe-CCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV-SDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~-~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
...+++++|+.+.++......|...|+++.-+ .+...+..... ....+++++|.+....+... .+......
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~--~~~pDvVildie~p~rd~~e------~~~~~~~~ 75 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCE--RLQPDVVILDIEMPRRDIIE------ALLLASEN 75 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHH--hcCCCEEEEecCCCCccHHH------HHHHhhcC
Confidence 35789999999999999998998888876543 33333322221 24567888877665555221 22222333
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
..+.++++.....+........ .+...++.||+..+.+...|.-+.
T Consensus 76 ~~~piv~lt~~s~p~~i~~a~~-~Gv~ayivkpi~~~rl~p~L~vA~ 121 (194)
T COG3707 76 VARPIVALTAYSDPALIEAAIE-AGVMAYIVKPLDESRLLPILDVAV 121 (194)
T ss_pred CCCCEEEEEccCChHHHHHHHH-cCCeEEEecCcchhhhhHHHHHHH
Confidence 4444555544333322222222 266789999999999888776554
No 284
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=50.77 E-value=2.1 Score=50.34 Aligned_cols=51 Identities=35% Similarity=0.662 Sum_probs=32.1
Q ss_pred EEEEEecCCCCChhhHhh--------hcCccccCCC---CCCCCCCc-ccchHHHHHHHHHHc
Q 003018 461 IVSVEDTGQGIPLEAQSR--------IFTPFMQVGP---SISRTHGG-TGIGLSISKYLVGRM 511 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~--------iF~pF~q~d~---s~~~~~~G-tGLGLsI~k~lv~~m 511 (856)
.|+|.|+|.|||-+..++ ||.-...... ..-...|| .|.|.|.|..|-+.+
T Consensus 69 sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~~l 131 (635)
T COG0187 69 SISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALSTWL 131 (635)
T ss_pred eEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccEeecCCCccceEEEecccceE
Confidence 389999999999887443 5544322111 11112233 689999998887654
No 285
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=50.01 E-value=48 Score=35.39 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=41.8
Q ss_pred CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCC------HHhHHHHHHcCCCeEEeCCCCHHHHH
Q 003018 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI------QATYEECLRSGMDGYVSKPFEAEQLY 841 (856)
Q Consensus 768 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~------~~~~~~~~~aG~d~yl~KP~~~~~L~ 841 (856)
+.++.++.||+. ...+|++.|+-... +....+|.++|+|+.+.-....++..
T Consensus 73 ~~~~~v~~ir~~----------------------~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~ 130 (256)
T TIGR00262 73 KCFELLKKVRQK----------------------HPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESG 130 (256)
T ss_pred HHHHHHHHHHhc----------------------CCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHH
Confidence 457778888852 13579888887655 67788999999999998877777665
Q ss_pred HHHhh
Q 003018 842 REVSR 846 (856)
Q Consensus 842 ~~l~~ 846 (856)
..+..
T Consensus 131 ~~~~~ 135 (256)
T TIGR00262 131 DLVEA 135 (256)
T ss_pred HHHHH
Confidence 55543
No 286
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=49.84 E-value=1.9e+02 Score=34.60 Aligned_cols=109 Identities=12% Similarity=0.104 Sum_probs=63.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCH-HHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG-KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g-~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
+..++++|.|+...+.+ ++.|+.+.+.+-. .+.++.. .-++.|.++.-..=...+ ..++..+|+.
T Consensus 440 g~~vvvId~d~~~~~~~----~~~g~~~i~GD~~~~~~L~~a-~i~~a~~viv~~~~~~~~-~~iv~~~~~~-------- 505 (558)
T PRK10669 440 GIPLVVIETSRTRVDEL----RERGIRAVLGNAANEEIMQLA-HLDCARWLLLTIPNGYEA-GEIVASAREK-------- 505 (558)
T ss_pred CCCEEEEECCHHHHHHH----HHCCCeEEEcCCCCHHHHHhc-CccccCEEEEEcCChHHH-HHHHHHHHHH--------
Confidence 45688999887654333 4568887776543 3444444 234688777654322111 2344555653
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
+++.+||+-+.+ ++..+...++|+|..+. | ...+.+.+.+.+..
T Consensus 506 --------------~~~~~iiar~~~--~~~~~~l~~~Gad~vv~-p--~~~~a~~i~~~l~~ 549 (558)
T PRK10669 506 --------------RPDIEIIARAHY--DDEVAYITERGANQVVM-G--EREIARTMLELLET 549 (558)
T ss_pred --------------CCCCeEEEEECC--HHHHHHHHHcCCCEEEC-h--HHHHHHHHHHHhcC
Confidence 345788887653 55666677899996663 2 34555555555543
No 287
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=49.51 E-value=1e+02 Score=32.29 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=48.3
Q ss_pred HHHHHHHhCCCCCccEEEEeCCCCCC-CH--HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHh
Q 003018 742 GKKATELLMPPHQFDACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818 (856)
Q Consensus 742 g~eA~~~l~~~~~~DlilmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~ 818 (856)
..+.++.+.. ..--++++|+..-++ .| ++++++|.+. ..+|+++--+-.+.++
T Consensus 148 ~~~~~~~~~~-~~~~li~~di~~~G~~~g~~~~~~~~i~~~-----------------------~~ipvi~~GGi~s~ed 203 (233)
T cd04723 148 PEELLRRLAK-WPEELIVLDIDRVGSGQGPDLELLERLAAR-----------------------ADIPVIAAGGVRSVED 203 (233)
T ss_pred HHHHHHHHHH-hCCeEEEEEcCccccCCCcCHHHHHHHHHh-----------------------cCCCEEEeCCCCCHHH
Confidence 4555555532 322589999976443 22 5677777652 3589999988999999
Q ss_pred HHHHHHcCCCeEEe
Q 003018 819 YEECLRSGMDGYVS 832 (856)
Q Consensus 819 ~~~~~~aG~d~yl~ 832 (856)
..+++++|+++.+.
T Consensus 204 i~~l~~~G~~~viv 217 (233)
T cd04723 204 LELLKKLGASGALV 217 (233)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999998874
No 288
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=49.10 E-value=1.9e+02 Score=30.78 Aligned_cols=95 Identities=21% Similarity=0.178 Sum_probs=67.5
Q ss_pred HHHHHhhcCCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHH-----HHHHHHHhhcccccccccccccchhhh
Q 003018 725 AAAGLKRYGAAVVC--VERGKKATELLMPPHQFDACFMDIQMPEMDGF-----EATKIIREMEHNFNNRIRRGEVSIEAY 797 (856)
Q Consensus 725 l~~~L~~~g~~v~~--a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~-----e~~~~IR~~~~~~~~~~~~g~~~~~~~ 797 (856)
+.+.|-+.||.|.. ..|..-|-++.. -. -.++|=+--|.-.|. ..++.|++
T Consensus 129 Aae~Lv~eGF~VlPY~~~D~v~a~rLed-~G--c~aVMPlgsPIGSg~Gl~n~~~l~~i~e------------------- 186 (267)
T CHL00162 129 AAEFLVKKGFTVLPYINADPMLAKHLED-IG--CATVMPLGSPIGSGQGLQNLLNLQIIIE------------------- 186 (267)
T ss_pred HHHHHHHCCCEEeecCCCCHHHHHHHHH-cC--CeEEeeccCcccCCCCCCCHHHHHHHHH-------------------
Confidence 45566678999875 345555554432 22 367888888876653 35666665
Q ss_pred ccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEE-----eCCCCHHHHHHHHh
Q 003018 798 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREVS 845 (856)
Q Consensus 798 ~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~~~l~ 845 (856)
...+|||.=.+-...++..++++.|+|+.+ .|--++.++..+++
T Consensus 187 ----~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~ 235 (267)
T CHL00162 187 ----NAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMK 235 (267)
T ss_pred ----cCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHH
Confidence 346899988888899999999999999984 56677777776665
No 289
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=48.78 E-value=1e+02 Score=26.20 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=46.8
Q ss_pred hHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHHHHHHHHHH
Q 003018 267 VSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 346 (856)
Q Consensus 267 iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~ll~~v~~~~ 346 (856)
+.|-+|+-|..|.+++.+-.....+++-++.+..+......|.. +.+.|-- ++ ....+|+.+.+++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~-vh~~L~~----~~----~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIAL-VHEQLYQ----SE----DLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHhc----CC----CCCeecHHHHHHHHHHHH
Confidence 57999999999999999876666666655555555544444332 2232221 11 224589999999988765
Q ss_pred H
Q 003018 347 S 347 (856)
Q Consensus 347 ~ 347 (856)
.
T Consensus 73 ~ 73 (76)
T PF07568_consen 73 R 73 (76)
T ss_pred H
Confidence 4
No 290
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=48.47 E-value=95 Score=33.16 Aligned_cols=101 Identities=21% Similarity=0.314 Sum_probs=66.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEE-----EcCHHHHHHHhCCCCCccEEEEeCCC---------CCCCH------
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVC-----VERGKKATELLMPPHQFDACFMDIQM---------PEMDG------ 769 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~-----a~~g~eA~~~l~~~~~~DlilmDi~M---------P~mdG------ 769 (856)
-|||=+|-++.-.+.....-++.|..+.- -+-...-.+++ +.+.||++++==+= -.++-
T Consensus 105 GrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll-~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSky 183 (283)
T TIGR02855 105 GRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLI-EEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKY 183 (283)
T ss_pred CcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHH-HHhCCCEEEEeCchhhhcCCCChhhhhhhhhhHH
Confidence 48999999999998888888888766552 23334445555 56889998753211 01111
Q ss_pred -HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCC
Q 003018 770 -FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834 (856)
Q Consensus 770 -~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP 834 (856)
.|+.+..|+.+++. -=+++-|.+.++..+..++|||+ |=+-|
T Consensus 184 FVeaVk~aR~y~~~~----------------------D~LVIFAGACQS~yEall~AGAN-FASSP 226 (283)
T TIGR02855 184 FVETVREARKYVPSL----------------------DQLVIFAGACQSHFESLIRAGAN-FASSP 226 (283)
T ss_pred HHHHHHHHHhcCCCc----------------------ccEEEEcchhHHHHHHHHHcCcc-ccCCc
Confidence 35667777765432 12445577889999999999997 44444
No 291
>PLN03128 DNA topoisomerase 2; Provisional
Probab=48.45 E-value=26 Score=45.21 Aligned_cols=51 Identities=27% Similarity=0.552 Sum_probs=30.5
Q ss_pred EEEEEecCCCCChhhHh--------hhcCccccC---CCCCCCCCCc-ccchHHHHHHHHHHc
Q 003018 461 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGRM 511 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~--------~iF~pF~q~---d~s~~~~~~G-tGLGLsI~k~lv~~m 511 (856)
.|+|.|+|.|||-+..+ -||.-.... |....+..|| .|.|.+.|.-|-+.+
T Consensus 87 sIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ykvSGGlhGvGasvvNaLS~~f 149 (1135)
T PLN03128 87 TISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKKTTGGRNGYGAKLANIFSTEF 149 (1135)
T ss_pred eEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccceeeccccCCCCeEEEeecCeE
Confidence 48999999999986432 234333221 1111222344 699999887776543
No 292
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=48.32 E-value=2.3e+02 Score=29.05 Aligned_cols=80 Identities=10% Similarity=0.074 Sum_probs=52.0
Q ss_pred HhhcCCEEE-EEcCHHHHHHHhCCCCCccEEEEe---CCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCC
Q 003018 729 LKRYGAAVV-CVERGKKATELLMPPHQFDACFMD---IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH 804 (856)
Q Consensus 729 L~~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmD---i~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~ 804 (856)
....|..+. .+.+-.++.+... ..+|.+..- .... ..+++.++++++.- ...
T Consensus 117 ~~~~g~~~~v~v~~~~e~~~~~~--~g~~~i~~t~~~~~~~-~~~~~~~~~l~~~~---------------------~~~ 172 (217)
T cd00331 117 ARELGMEVLVEVHDEEELERALA--LGAKIIGINNRDLKTF-EVDLNTTERLAPLI---------------------PKD 172 (217)
T ss_pred HHHcCCeEEEEECCHHHHHHHHH--cCCCEEEEeCCCcccc-CcCHHHHHHHHHhC---------------------CCC
Confidence 355787754 3455555554442 457777543 1111 23357778877521 125
Q ss_pred CcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 805 VPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 805 ~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
+|+++..+-...++..+++++|+|+++.
T Consensus 173 ~pvia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 173 VILVSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred CEEEEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 7999999988899999999999999864
No 293
>PRK10742 putative methyltransferase; Provisional
Probab=48.03 E-value=2.1e+02 Score=30.38 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=62.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhc------CC----EEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHH-HHHHH
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRY------GA----AVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFE-ATKII 776 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~------g~----~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e-~~~~I 776 (856)
|.+|..||-++....+++.-|++. +. .+. ...|..+.+... ...||+|++|-+-|.-.--. ..+.+
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~--~~~fDVVYlDPMfp~~~ksa~vkk~m 187 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI--TPRPQVVYLDPMFPHKQKSALVKKEM 187 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC--CCCCcEEEECCCCCCCccccchhhhH
Confidence 567999999999999999999984 21 222 235666666654 23699999999998754211 22333
Q ss_pred HhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeC
Q 003018 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833 (856)
Q Consensus 777 R~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~K 833 (856)
|-+. -++-.....++..+.|++.--.-.+.|
T Consensus 188 r~~~--------------------------~l~g~d~d~~~lL~~Al~~A~kRVVVK 218 (250)
T PRK10742 188 RVFQ--------------------------SLVGPDLDADGLLEPARLLATKRVVVK 218 (250)
T ss_pred HHHH--------------------------HhcCCCCChHHHHHHHHHhcCceEEEe
Confidence 3211 012233445667777777766667766
No 294
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=47.88 E-value=1.4e+02 Score=32.23 Aligned_cols=101 Identities=26% Similarity=0.347 Sum_probs=66.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEE-----cCHHHHHHHhCCCCCccEEEEeCCC---------CCCCH------
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCV-----ERGKKATELLMPPHQFDACFMDIQM---------PEMDG------ 769 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a-----~~g~eA~~~l~~~~~~DlilmDi~M---------P~mdG------ 769 (856)
-|||=+|-++.-.+.....-+++|..+.-. +-...-.+++ +.+.||++++==+= -.++.
T Consensus 106 GkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll-~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSky 184 (287)
T PF05582_consen 106 GKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLL-EEYRPDILVITGHDGYLKNKKDYSDLNNYRNSKY 184 (287)
T ss_pred CeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHH-HHcCCCEEEEeCchhhhcCCCChhhhhhhhccHH
Confidence 489999999999988888888888766532 2223334445 56889998753210 11111
Q ss_pred -HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCC
Q 003018 770 -FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834 (856)
Q Consensus 770 -~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP 834 (856)
.|+.+..|+.+++. + =+++-|.+.++..+..++|||+ |=+-|
T Consensus 185 FVeaV~~aR~~ep~~--------------------D--~LVIfAGACQS~fEall~AGAN-FASSP 227 (287)
T PF05582_consen 185 FVEAVKEARKYEPNL--------------------D--DLVIFAGACQSHFEALLEAGAN-FASSP 227 (287)
T ss_pred HHHHHHHHHhcCCCc--------------------c--cEEEEcchhHHHHHHHHHcCcc-ccCCc
Confidence 35777778766532 1 2344567889999999999997 44444
No 295
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.55 E-value=1.7e+02 Score=31.63 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=60.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhh---cC---CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKR---YG---AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~---~g---~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~ 784 (856)
.|||-|++-... .+...+++ .. -..+.+++-++|.+.+. ...|+|++|=..|+ +=-++.+.+++..
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~--agaDiI~LDn~~~e-~l~~~v~~l~~~~---- 227 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAK--AGADIIMLDNMTPE-EIREVIEALKREG---- 227 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH--cCcCEEEECCCCHH-HHHHHHHHHHhcC----
Confidence 488877775443 44444432 22 23456889999999884 45899999965433 2222333333210
Q ss_pred ccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEE
Q 003018 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831 (856)
Q Consensus 785 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 831 (856)
..++ ..|..|+....+...+..+.|+|.+.
T Consensus 228 ----------------~~~~-~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 228 ----------------LRER-VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred ----------------cCCC-EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 0122 36788999999999999999998654
No 296
>PRK15029 arginine decarboxylase; Provisional
Probab=47.38 E-value=1.1e+02 Score=38.07 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=53.6
Q ss_pred cEEEEeCCchh--------hhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCch-hHHHHHHH
Q 003018 562 MKALVVDPRPI--------RAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSV-STLFVNNL 632 (856)
Q Consensus 562 ~~~lvvd~~~~--------~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~-~~~~~~~~ 632 (856)
+++|+||++.. ........|+..|++|..+.+..+++..+... ..++++++|..+...+... ...++..+
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 36899999985 57888999999999999999999999998542 3578999987655443321 12455666
Q ss_pred hh
Q 003018 633 RK 634 (856)
Q Consensus 633 ~~ 634 (856)
++
T Consensus 80 R~ 81 (755)
T PRK15029 80 HE 81 (755)
T ss_pred Hh
Confidence 64
No 297
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=47.32 E-value=1.2e+02 Score=22.90 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003018 209 LLAISTSIGILVIASLVGHIFQATVNRIA 237 (856)
Q Consensus 209 ~~~~~~~~~~l~i~~l~~~~~~~~~~r~~ 237 (856)
+.++...+.++.+.+.+|..++..+..++
T Consensus 5 lt~iFsvvIil~If~~iGl~IyQkikqIr 33 (49)
T PF11044_consen 5 LTTIFSVVIILGIFAWIGLSIYQKIKQIR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555655665555443
No 298
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=47.23 E-value=1.4e+02 Score=36.25 Aligned_cols=95 Identities=16% Similarity=0.287 Sum_probs=62.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHH-HHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA-~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
+..+.++|.|+...+. +++.|+.+...+-.+.. ++.. .-++.|+++.-..=++ +-..++..+|+.
T Consensus 423 g~~vvvID~d~~~v~~----~~~~g~~v~~GDat~~~~L~~a-gi~~A~~vv~~~~d~~-~n~~i~~~~r~~-------- 488 (601)
T PRK03659 423 KMRITVLERDISAVNL----MRKYGYKVYYGDATQLELLRAA-GAEKAEAIVITCNEPE-DTMKIVELCQQH-------- 488 (601)
T ss_pred CCCEEEEECCHHHHHH----HHhCCCeEEEeeCCCHHHHHhc-CCccCCEEEEEeCCHH-HHHHHHHHHHHH--------
Confidence 4578999999875543 35578888877654443 4443 3356788877654332 234566677763
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~K 833 (856)
+++++||+-+.+ ++..++..++|+|..+.-
T Consensus 489 --------------~p~~~IiaRa~~--~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 489 --------------FPHLHILARARG--RVEAHELLQAGVTQFSRE 518 (601)
T ss_pred --------------CCCCeEEEEeCC--HHHHHHHHhCCCCEEEcc
Confidence 356788876653 566777889999987754
No 299
>PRK13558 bacterio-opsin activator; Provisional
Probab=47.16 E-value=63 Score=39.42 Aligned_cols=116 Identities=11% Similarity=0.123 Sum_probs=71.1
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.++|++|+++.........+...|+.+..+.+..+++..+.. ..++++++|..+...+ ....+..++... ...
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~--~~~Dlvl~d~~lp~~~---g~~~l~~l~~~~--~~~ 80 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA--GEIDCVVADHEPDGFD---GLALLEAVRQTT--AVP 80 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc--cCCCEEEEeccCCCCc---HHHHHHHHHhcC--CCC
Confidence 579999999999888888899999999999999999887654 4478888887654332 223455554422 123
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchH--HHHHHHHHHh
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS--MLAASLQRAM 685 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~--~l~~~l~~~~ 685 (856)
+++++............. ..+...++.||.... .+...+...+
T Consensus 81 piI~lt~~~~~~~~~~al-~~Ga~dyl~k~~~~~~~~l~~~i~~~~ 125 (665)
T PRK13558 81 PVVVVPTAGDEAVARRAV-DADAAAYVPAVSDDATAAIAERIESAV 125 (665)
T ss_pred CEEEEECCCCHHHHHHHH-hcCcceEEeccchhHHHHHHHHHHHhh
Confidence 344443322211111111 124556888886543 4444444443
No 300
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=47.11 E-value=2.7e+02 Score=30.91 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=62.4
Q ss_pred eEEEEc----CCHHHHHHHHHHHhhcC-CEEEE--EcCHHHHHHHhCCCCCccEEEEeC-------CCC----CCC--HH
Q 003018 711 KILIVD----DNNVNLKVAAAGLKRYG-AAVVC--VERGKKATELLMPPHQFDACFMDI-------QMP----EMD--GF 770 (856)
Q Consensus 711 ~ILvVd----Dn~~n~~~l~~~L~~~g-~~v~~--a~~g~eA~~~l~~~~~~DlilmDi-------~MP----~md--G~ 770 (856)
.++++| ++...++.++.+=+++. ..|.. +.+.++|..+.. ..+|.|..-+ .-+ ... ++
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l 190 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN--AGADATKVGIGPGKVCITKIKTGFGTGGWQL 190 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH--cCcCEEEECCCCCcccccccccCCCCCccHH
Confidence 577774 33334444544444554 44443 678888888763 4588876331 111 112 45
Q ss_pred HHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 771 e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
.+++.+++. .++|||+--+-....+..+|+.+|++.+..
T Consensus 191 ~ai~~~~~~-----------------------~~ipVIAdGGI~~~~Di~KaLa~GA~aV~v 229 (326)
T PRK05458 191 AALRWCAKA-----------------------ARKPIIADGGIRTHGDIAKSIRFGATMVMI 229 (326)
T ss_pred HHHHHHHHH-----------------------cCCCEEEeCCCCCHHHHHHHHHhCCCEEEe
Confidence 567777641 258999999999999999999999998754
No 301
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.64 E-value=2e+02 Score=27.13 Aligned_cols=29 Identities=21% Similarity=0.486 Sum_probs=14.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003018 207 WPLLAISTSIGILVIASLVGHIFQATVNR 235 (856)
Q Consensus 207 ~~~~~~~~~~~~l~i~~l~~~~~~~~~~r 235 (856)
|....|...+..+++.+++|+++.+...+
T Consensus 3 wt~~~W~~a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 3 WTFMTWEYALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 33334444444455555666665544443
No 302
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=46.45 E-value=1.6e+02 Score=27.32 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhcCCEEEEEc--CHHHHHHHhCCCCCccEEEEeCCCCCC-CHHHHHHHHHhhcccccccccccccchhh
Q 003018 720 VNLKVAAAGLKRYGAAVVCVE--RGKKATELLMPPHQFDACFMDIQMPEM-DGFEATKIIREMEHNFNNRIRRGEVSIEA 796 (856)
Q Consensus 720 ~n~~~l~~~L~~~g~~v~~a~--~g~eA~~~l~~~~~~DlilmDi~MP~m-dG~e~~~~IR~~~~~~~~~~~~g~~~~~~ 796 (856)
.....+..+|++.|+.+.... .-++.++.+.....||+|.+.+.-+.. ...++++.||+.
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~----------------- 65 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEV----------------- 65 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHH-----------------
Confidence 345678889999998877644 344455555332679999999854443 356677788864
Q ss_pred hccCCCCCCcEEEEecCCCHHhHHH-HHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 797 YENVSNFHVPILAMTADVIQATYEE-CLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 797 ~~~~~~~~~pIIalTa~~~~~~~~~-~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.++++|++-=..+. ...+. ....++ ||+..=--...+.+.+..+.
T Consensus 66 -----~p~~~iv~GG~~~t-~~p~~~~~~~~~-D~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 66 -----LPNVIVVVGGPHAT-FFPEEILEEPGV-DFVVIGEGEETFLKLLEELE 111 (127)
T ss_pred -----CCCCEEEECCcchh-hCHHHHhcCCCC-CEEEECCcHHHHHHHHHHHH
Confidence 23556664433332 22233 234555 46665433445555555543
No 303
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=46.38 E-value=2.2e+02 Score=29.17 Aligned_cols=116 Identities=5% Similarity=0.022 Sum_probs=69.5
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCc---EEEEeCCHHHHHHHHhcCCCcceEEEeecc--ccccCCchhHHHHHHHhhcCC
Q 003018 563 KALVVDPRPIRAKVSRYHIQRLGI---QVEVVSDQLQCLSQIASGSKIINMILVEQE--VWEKDTSVSTLFVNNLRKLGC 637 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~g~---~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~--~~~~~~~~~~~~~~~~~~~~~ 637 (856)
.++++|+++..+.-.+..|...+. .+..+++..+++..+.. ..++.+++|.. +..++. ......+++..+
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~--~~pDlvLlDl~~~l~~~~g---~~~i~~i~~~~p 76 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS--LRPSVVFINEDCFIHDASN---SQRIKQIINQHP 76 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc--cCCCEEEEeCcccCCCCCh---HHHHHHHHHHCC
Confidence 578999999999999999987653 34567888888876643 34689999954 322221 124455544322
Q ss_pred CCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 638 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 638 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..+++++............... ....++.|+.....+...++.+..
T Consensus 77 --~~~iivlt~~~~~~~~~~~~~~-~~~~~~~K~~~~~~L~~aI~~v~~ 122 (207)
T PRK15411 77 --NTLFIVFMAIANIHFDEYLLVR-KNLLISSKSIKPESLDDLLGDILK 122 (207)
T ss_pred --CCeEEEEECCCchhHHHHHHHH-hhceeeeccCCHHHHHHHHHHHHc
Confidence 2455555443221110000000 001256899999999999888764
No 304
>PRK10403 transcriptional regulator NarP; Provisional
Probab=46.24 E-value=1.7e+02 Score=28.92 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=70.2
Q ss_pred cEEEEeCCchhhhHHHHHHHHH-hCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQR-LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~-~g~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.+++++|+++.........+.. .++.+. .+.+..+++..+.. ..++.+++|......+. ...+..++....
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~~---~~~~~~l~~~~~-- 79 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR--LDPDVILLDLNMKGMSG---LDTLNALRRDGV-- 79 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCcH---HHHHHHHHHhCC--
Confidence 5789999999888888888875 577765 57788888876543 34778888765543322 223444443221
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
..+++++............ ...+...++.||+....+...+...+
T Consensus 80 ~~~ii~l~~~~~~~~~~~~-~~~g~~~~i~kp~~~~~l~~~i~~~~ 124 (215)
T PRK10403 80 TAQIIILTVSDASSDVFAL-IDAGADGYLLKDSDPEVLLEAIRAGA 124 (215)
T ss_pred CCeEEEEeCCCChHHHHHH-HHcCCCeEEecCCCHHHHHHHHHHHh
Confidence 2233443322111111111 12256678999999999988887765
No 305
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=45.85 E-value=58 Score=34.39 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=29.7
Q ss_pred CCcEEEEecCCC------HHhHHHHHHcCCCeEEeCCCCHHHHHHHHh
Q 003018 804 HVPILAMTADVI------QATYEECLRSGMDGYVSKPFEAEQLYREVS 845 (856)
Q Consensus 804 ~~pIIalTa~~~------~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 845 (856)
.+|+++|+-... +....+|.++|+++.+.-....+++...+.
T Consensus 76 ~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~ 123 (242)
T cd04724 76 TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFRE 123 (242)
T ss_pred CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHH
Confidence 578888887443 667888999999999985444455444443
No 306
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=45.77 E-value=2.1e+02 Score=30.12 Aligned_cols=89 Identities=15% Similarity=0.061 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhcCCEEEEEcCH---HHHHHHhCCCCCccEEEEeCCCCCCC------HHHHHHHHHhhcccccccccccc
Q 003018 721 NLKVAAAGLKRYGAAVVCVERG---KKATELLMPPHQFDACFMDIQMPEMD------GFEATKIIREMEHNFNNRIRRGE 791 (856)
Q Consensus 721 n~~~l~~~L~~~g~~v~~a~~g---~eA~~~l~~~~~~DlilmDi~MP~md------G~e~~~~IR~~~~~~~~~~~~g~ 791 (856)
....+...+++.|..+..+-+. .+.++.+. .....+++| -.+|+-. -.+.++++|++-
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~-~~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~----------- 183 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLS-KLSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLV----------- 183 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH-HhCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhc-----------
Confidence 3455777888899876665444 34445443 234577778 4566532 234566666531
Q ss_pred cchhhhccCCCCCCcEEEEecCC-CHHhHHHHHHcCCCeEEeCC
Q 003018 792 VSIEAYENVSNFHVPILAMTADV-IQATYEECLRSGMDGYVSKP 834 (856)
Q Consensus 792 ~~~~~~~~~~~~~~pIIalTa~~-~~~~~~~~~~aG~d~yl~KP 834 (856)
...||+ +=... ..++..++.++|+|+++.--
T Consensus 184 -----------~~~~i~-v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 184 -----------GNKYLV-VGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred -----------CCCCEE-EeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 124654 44444 77888899999999998764
No 307
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=45.49 E-value=69 Score=32.42 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=39.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCC--E-EEEEcCHHHHHHHhCCCCCccEEEEeC
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGA--A-VVCVERGKKATELLMPPHQFDACFMDI 762 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~--~-v~~a~~g~eA~~~l~~~~~~DlilmDi 762 (856)
.++++||-|.-...+++.-++..|+ . .....|...++..+.....||+||+|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 5799999999999999998888772 2 333445557777664444599999996
No 308
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.19 E-value=85 Score=34.11 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=48.9
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCC
Q 003018 735 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814 (856)
Q Consensus 735 ~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 814 (856)
..+.+++-+||.+.+. ...|+|.+| +|+.-+=-++.+.+|+. .++ ..|..|+..
T Consensus 202 IeVEv~tl~ea~eal~--~gaDiI~LD-nm~~e~vk~av~~~~~~----------------------~~~-v~ieaSGGI 255 (289)
T PRK07896 202 CEVEVDSLEQLDEVLA--EGAELVLLD-NFPVWQTQEAVQRRDAR----------------------APT-VLLESSGGL 255 (289)
T ss_pred EEEEcCCHHHHHHHHH--cCCCEEEeC-CCCHHHHHHHHHHHhcc----------------------CCC-EEEEEECCC
Confidence 4566789999999884 458999999 45422222333333321 123 367889999
Q ss_pred CHHhHHHHHHcCCCeEE
Q 003018 815 IQATYEECLRSGMDGYV 831 (856)
Q Consensus 815 ~~~~~~~~~~aG~d~yl 831 (856)
..+...+..+.|+|.+.
T Consensus 256 ~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 256 TLDTAAAYAETGVDYLA 272 (289)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998654
No 309
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=43.92 E-value=3.2e+02 Score=26.75 Aligned_cols=59 Identities=12% Similarity=0.168 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 003018 212 ISTSIGILVIASLVGHIFQATVNRI-----AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHE 270 (856)
Q Consensus 212 ~~~~~~~l~i~~l~~~~~~~~~~r~-----~~~~~~~~~~~~~~~~ae~a~~aks~fla~iSHE 270 (856)
+..++.++++.+++.++++..+... ..+..+.....+.+++++.....-.+-++..-.|
T Consensus 12 ~~~~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~e 75 (164)
T PRK14471 12 FWQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAE 75 (164)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555556665554433 3344444444444444444333333334433333
No 310
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=42.93 E-value=1.6e+02 Score=29.52 Aligned_cols=70 Identities=21% Similarity=0.272 Sum_probs=47.4
Q ss_pred EEEcCHHHHHHHhCCCCCccEEEEeCCCCC--------CCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEE
Q 003018 737 VCVERGKKATELLMPPHQFDACFMDIQMPE--------MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL 808 (856)
Q Consensus 737 ~~a~~g~eA~~~l~~~~~~DlilmDi~MP~--------mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pII 808 (856)
..+.+..++.+.. ....|+|+.+--.|. ..|++..+++.+. ...+||+
T Consensus 101 ~s~h~~~e~~~a~--~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~----------------------~~~~pv~ 156 (196)
T TIGR00693 101 VSTHNLEELAEAE--AEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAAT----------------------SIDIPIV 156 (196)
T ss_pred EeCCCHHHHHHHh--HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh----------------------cCCCCEE
Confidence 3456666766544 246899987654431 2478888888752 1247888
Q ss_pred EEecCCCHHhHHHHHHcCCCeEE
Q 003018 809 AMTADVIQATYEECLRSGMDGYV 831 (856)
Q Consensus 809 alTa~~~~~~~~~~~~aG~d~yl 831 (856)
++ +....+...+++++|++++.
T Consensus 157 a~-GGI~~~~~~~~~~~G~~gva 178 (196)
T TIGR00693 157 AI-GGITLENAAEVLAAGADGVA 178 (196)
T ss_pred EE-CCcCHHHHHHHHHcCCCEEE
Confidence 76 44568888899999999875
No 311
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=42.91 E-value=4.3e+02 Score=30.65 Aligned_cols=63 Identities=22% Similarity=0.243 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 003018 211 AISTSIGILVIASLVGHIFQATVNRI-----AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRT 273 (856)
Q Consensus 211 ~~~~~~~~l~i~~l~~~~~~~~~~r~-----~~~~~~~~~~~~~~~~ae~a~~aks~fla~iSHElRT 273 (856)
++..++.++++++++.++++..+..+ .++.+.+.+..+.+++++++...-.+-++....|-+.
T Consensus 4 ~i~qlInFlIl~~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~ 71 (445)
T PRK13428 4 FIGQLIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAAR 71 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555544433 3344444444444444444433333344444444433
No 312
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=42.71 E-value=1.5e+02 Score=35.97 Aligned_cols=93 Identities=16% Similarity=0.291 Sum_probs=60.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHH-HHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA-~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
+..+.++|.|+...+.+ ++.|+.+...+-.+.. ++.. .-++.|+++.-..=++.+ ..++..+|+.
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~a-gi~~A~~vvv~~~d~~~n-~~i~~~ar~~-------- 488 (621)
T PRK03562 423 GVKMTVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESA-GAAKAEVLINAIDDPQTS-LQLVELVKEH-------- 488 (621)
T ss_pred CCCEEEEECCHHHHHHH----HhcCCeEEEEeCCCHHHHHhc-CCCcCCEEEEEeCCHHHH-HHHHHHHHHh--------
Confidence 45689999998765444 4578888776544433 3333 334688888776443333 5566777763
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEE
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 831 (856)
+++++|++-+.+ .+...+..++|+|..+
T Consensus 489 --------------~p~~~iiaRa~d--~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 489 --------------FPHLQIIARARD--VDHYIRLRQAGVEKPE 516 (621)
T ss_pred --------------CCCCeEEEEECC--HHHHHHHHHCCCCEEe
Confidence 456788887654 5667778899999764
No 313
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=42.39 E-value=4e+02 Score=27.37 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHH
Q 003018 209 LLAISTSIGILVIASLVGHIFQATVNR-----IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPM 275 (856)
Q Consensus 209 ~~~~~~~~~~l~i~~l~~~~~~~~~~r-----~~~~~~~~~~~~~~~~~ae~a~~aks~fla~iSHElRTPL 275 (856)
|..+..++.++++++++.++++..+.. ...+........+.+++++.....-.+-++..-.|-+.=+
T Consensus 49 ~~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii 120 (205)
T PRK06231 49 WVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEII 120 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555554443 3344444444444444444433333333444444443333
No 314
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=42.34 E-value=93 Score=30.97 Aligned_cols=71 Identities=25% Similarity=0.231 Sum_probs=47.2
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCC
Q 003018 735 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814 (856)
Q Consensus 735 ~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 814 (856)
..+.+++-+|+.+.+. ...|.|.+|=.-| -+=-++.+.++.. .++ ..|.+++..
T Consensus 83 I~VEv~~~ee~~ea~~--~g~d~I~lD~~~~-~~~~~~v~~l~~~----------------------~~~-v~ie~SGGI 136 (169)
T PF01729_consen 83 IEVEVENLEEAEEALE--AGADIIMLDNMSP-EDLKEAVEELREL----------------------NPR-VKIEASGGI 136 (169)
T ss_dssp EEEEESSHHHHHHHHH--TT-SEEEEES-CH-HHHHHHHHHHHHH----------------------TTT-SEEEEESSS
T ss_pred EEEEcCCHHHHHHHHH--hCCCEEEecCcCH-HHHHHHHHHHhhc----------------------CCc-EEEEEECCC
Confidence 3456788999998884 4599999996544 1222233333332 123 678899999
Q ss_pred CHHhHHHHHHcCCCeEE
Q 003018 815 IQATYEECLRSGMDGYV 831 (856)
Q Consensus 815 ~~~~~~~~~~aG~d~yl 831 (856)
..+...+..+.|+|.+.
T Consensus 137 ~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 137 TLENIAEYAKTGVDVIS 153 (169)
T ss_dssp STTTHHHHHHTT-SEEE
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998764
No 315
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.20 E-value=2e+02 Score=31.12 Aligned_cols=91 Identities=19% Similarity=0.229 Sum_probs=58.6
Q ss_pred eEEEEcCCHHHH--H--HHHHHHh----hcCC---EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 003018 711 KILIVDDNNVNL--K--VAAAGLK----RYGA---AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 779 (856)
Q Consensus 711 ~ILvVdDn~~n~--~--~l~~~L~----~~g~---~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~ 779 (856)
.|||-|.+-... - -+...++ +.++ ..+.+++-+++.+.+. ..+|+|++|= |+..+=-++...++.
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~--~gaDiImLDn-~s~e~l~~av~~~~~- 236 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLA--AGVDTIMLDN-FSLDDLREGVELVDG- 236 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHh--cCCCEEEECC-CCHHHHHHHHHHhCC-
Confidence 477766664432 0 2333333 3443 3467899999999874 4689999994 433333334443331
Q ss_pred cccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeE
Q 003018 780 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830 (856)
Q Consensus 780 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~y 830 (856)
..+|..++....+...+..+.|+|-.
T Consensus 237 -------------------------~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 237 -------------------------RAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred -------------------------CeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 12688899999999999999999854
No 316
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=41.77 E-value=2.6e+02 Score=32.22 Aligned_cols=108 Identities=12% Similarity=0.093 Sum_probs=61.5
Q ss_pred CCeEEEEcCCHHHHHH----HHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCC---CHHHHHHHHHhhcc
Q 003018 709 GRKILIVDDNNVNLKV----AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM---DGFEATKIIREMEH 781 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~----l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~m---dG~e~~~~IR~~~~ 781 (856)
|++|++++-+. .|.. +..+....|..+..+.+..++.+.+. ...+|+||+|. |+. |. +.++.++++..
T Consensus 252 G~~V~Lit~Dt-~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~-~~~~D~VLIDT--aGr~~rd~-~~l~eL~~~~~ 326 (432)
T PRK12724 252 GKSVSLYTTDN-YRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA-RDGSELILIDT--AGYSHRNL-EQLERMQSFYS 326 (432)
T ss_pred CCeEEEecccc-hhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH-hCCCCEEEEeC--CCCCccCH-HHHHHHHHHHH
Confidence 56898888776 2333 33333445666666656666666664 36799999996 332 22 33344443211
Q ss_pred cccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHH----cCCCeEEeCCCC
Q 003018 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR----SGMDGYVSKPFE 836 (856)
Q Consensus 782 ~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~----aG~d~yl~KP~~ 836 (856)
.. +...+.-.+++++|....++..+..+ .|.++.|.==+|
T Consensus 327 ~~---------------~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLD 370 (432)
T PRK12724 327 CF---------------GEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLD 370 (432)
T ss_pred hh---------------cCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEccc
Confidence 00 00112346788898888766666554 577777644343
No 317
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=41.76 E-value=34 Score=40.03 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.2
Q ss_pred EEEEEecCCCCChhhHhhhcCccccC
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTPFMQV 486 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~pF~q~ 486 (856)
.+.|.|+|-||-.++++-+-++|.+.
T Consensus 58 LlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 58 LLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred EEEEecCCCccchhhhHHHHHHhhhh
Confidence 47899999999999999999999754
No 318
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.71 E-value=3.6e+02 Score=26.66 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=72.8
Q ss_pred HHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHHHHHH
Q 003018 263 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 342 (856)
Q Consensus 263 fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~ll~~v 342 (856)
+.+-+.|+|=.|..+|-.-+++|.+..-+ .+-++.|..++..+. ..|.|+|+--|.---.-..+|-.+.=+-+
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~ad---dDAm~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgeaek~A 90 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGAD---DDAMDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEAEKAA 90 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCcc---HHHHHHHHHHhhhHH----HHHHHHHHHhcccccccccccchhHHHHH
Confidence 45678999999999999999999877654 455666666666554 46789998766543333446655543333
Q ss_pred HHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCe-EEEEE
Q 003018 343 LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-IFVTV 400 (856)
Q Consensus 343 ~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~-I~v~v 400 (856)
.+.|. .+| -++...... .+ -.+.+. +.+.||+-=|--.-+.|+ +.+++
T Consensus 91 ~~~~a---~ek-pe~~W~g~r----~~-~~Kn~v-kllLNl~lia~~aiPrGG~~~vtl 139 (214)
T COG5385 91 QDFFA---NEK-PELTWNGPR----AI-LPKNRV-KLLLNLFLIAYGAIPRGGSLVVTL 139 (214)
T ss_pred HHHHh---ccC-CcccccCCh----hh-cCcchH-HHHHHHHHHHcccCCCCCeeEEEe
Confidence 33222 233 344433221 11 123333 467888877776677664 44443
No 319
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=41.49 E-value=1.5e+02 Score=26.77 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=26.3
Q ss_pred CCCHHhHHHHHHcCCCeEEeCCC--CHHHHHHHHhh
Q 003018 813 DVIQATYEECLRSGMDGYVSKPF--EAEQLYREVSR 846 (856)
Q Consensus 813 ~~~~~~~~~~~~aG~d~yl~KP~--~~~~L~~~l~~ 846 (856)
....+...+|+++|.+=|+.||+ +.+++.+.++.
T Consensus 73 ~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~ 108 (120)
T PF01408_consen 73 SSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEA 108 (120)
T ss_dssp GGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHH
Confidence 34456777899999999999998 77777766543
No 320
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=41.40 E-value=1.6e+02 Score=29.68 Aligned_cols=78 Identities=15% Similarity=0.052 Sum_probs=54.4
Q ss_pred HhhcCCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcE
Q 003018 729 LKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPI 807 (856)
Q Consensus 729 L~~~g~~-v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pI 807 (856)
.+++|.. +.-+.+..|+.+... ..+|.|-++- ++.. |.+.++.++.. .+++|+
T Consensus 93 ~~~~~~~~i~gv~t~~e~~~A~~--~Gad~i~~~p-~~~~-g~~~~~~l~~~----------------------~~~~p~ 146 (190)
T cd00452 93 ANRAGIPLLPGVATPTEIMQALE--LGADIVKLFP-AEAV-GPAYIKALKGP----------------------FPQVRF 146 (190)
T ss_pred HHHcCCcEECCcCCHHHHHHHHH--CCCCEEEEcC-Cccc-CHHHHHHHHhh----------------------CCCCeE
Confidence 3344543 334668888888763 4689998864 4444 99999998852 235787
Q ss_pred EEEecCCCHHhHHHHHHcCCCeEEeC
Q 003018 808 LAMTADVIQATYEECLRSGMDGYVSK 833 (856)
Q Consensus 808 IalTa~~~~~~~~~~~~aG~d~yl~K 833 (856)
++.- ....+...+++++|++....-
T Consensus 147 ~a~G-GI~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 147 MPTG-GVSLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred EEeC-CCCHHHHHHHHHCCCEEEEEc
Confidence 7654 558899999999999887543
No 321
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.37 E-value=90 Score=33.92 Aligned_cols=70 Identities=23% Similarity=0.210 Sum_probs=46.1
Q ss_pred EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCC
Q 003018 736 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815 (856)
Q Consensus 736 v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~ 815 (856)
-..+++.+||.+.+. ...|+|.+|- |...+=-++.+.+|+. .+++| +..++...
T Consensus 200 ~VEv~tleea~eA~~--~GaD~I~LDn-~~~e~l~~av~~~~~~----------------------~~~i~-leAsGGIt 253 (288)
T PRK07428 200 EVETETLEQVQEALE--YGADIIMLDN-MPVDLMQQAVQLIRQQ----------------------NPRVK-IEASGNIT 253 (288)
T ss_pred EEECCCHHHHHHHHH--cCCCEEEECC-CCHHHHHHHHHHHHhc----------------------CCCeE-EEEECCCC
Confidence 345789999999884 4689999993 3222222223333321 23455 55677888
Q ss_pred HHhHHHHHHcCCCeEE
Q 003018 816 QATYEECLRSGMDGYV 831 (856)
Q Consensus 816 ~~~~~~~~~aG~d~yl 831 (856)
.+...+..+.|+|...
T Consensus 254 ~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 254 LETIRAVAETGVDYIS 269 (288)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 9999999999998764
No 322
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=41.00 E-value=1.3e+02 Score=27.58 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCCC-HHHHHHHHHh
Q 003018 716 DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMD-GFEATKIIRE 778 (856)
Q Consensus 716 dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eA~~~l~~~~~~DlilmDi~MP~md-G~e~~~~IR~ 778 (856)
|-++.....+..+|++.|+++.... .-.+.++.+. ..+||+|.+.+.+.... .++.++++++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~-~~~pdiV~iS~~~~~~~~~~~~~~~~~~ 75 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAK-EEDADVVGLSALSTTHMEAMKLVIEALK 75 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHH-HcCCCEEEEecchHhHHHHHHHHHHHHH
Confidence 5566777889999999999998763 3344455553 46799999998775532 3445555554
No 323
>PRK00811 spermidine synthase; Provisional
Probab=40.81 E-value=1.2e+02 Score=32.77 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=40.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcC------CEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCC
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYG------AAV-VCVERGKKATELLMPPHQFDACFMDIQMPE 766 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g------~~v-~~a~~g~eA~~~l~~~~~~DlilmDi~MP~ 766 (856)
.+|.+||=++...+.++..+...+ -.+ ....|+.+.+.. ....||+|++|.--|.
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFDVIIVDSTDPV 162 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcccEEEECCCCCC
Confidence 479999999999999999887532 123 345677776654 2467999999986664
No 324
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=40.79 E-value=1.7e+02 Score=30.72 Aligned_cols=83 Identities=22% Similarity=0.153 Sum_probs=53.2
Q ss_pred HHHHHHhhcCCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHH-----HHHHHHHhhcccccccccccccchhh
Q 003018 724 VAAAGLKRYGAAVVC--VERGKKATELLMPPHQFDACFMDIQMPEMDGF-----EATKIIREMEHNFNNRIRRGEVSIEA 796 (856)
Q Consensus 724 ~l~~~L~~~g~~v~~--a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~-----e~~~~IR~~~~~~~~~~~~g~~~~~~ 796 (856)
...+.|-+.||.|.. -.|..-|-++.. -. -.++|=+--|.-.|. ..++.|++.
T Consensus 114 ~Aae~Lv~eGF~VlPY~~~D~v~akrL~d-~G--caavMPlgsPIGSg~Gi~n~~~l~~i~~~----------------- 173 (247)
T PF05690_consen 114 KAAEILVKEGFVVLPYCTDDPVLAKRLED-AG--CAAVMPLGSPIGSGRGIQNPYNLRIIIER----------------- 173 (247)
T ss_dssp HHHHHHHHTT-EEEEEE-S-HHHHHHHHH-TT---SEBEEBSSSTTT---SSTHHHHHHHHHH-----------------
T ss_pred HHHHHHHHCCCEEeecCCCCHHHHHHHHH-CC--CCEEEecccccccCcCCCCHHHHHHHHHh-----------------
Confidence 345677788999874 445555555442 12 347788888887764 466777652
Q ss_pred hccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 797 YENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 797 ~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
..+|||+=.+-..+++..++++.|+|+.|.
T Consensus 174 ------~~vPvIvDAGiG~pSdaa~AMElG~daVLv 203 (247)
T PF05690_consen 174 ------ADVPVIVDAGIGTPSDAAQAMELGADAVLV 203 (247)
T ss_dssp ------GSSSBEEES---SHHHHHHHHHTT-SEEEE
T ss_pred ------cCCcEEEeCCCCCHHHHHHHHHcCCceeeh
Confidence 268999988888899999999999999975
No 325
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.66 E-value=1.2e+02 Score=24.63 Aligned_cols=43 Identities=12% Similarity=0.225 Sum_probs=30.3
Q ss_pred HHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 003018 263 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 309 (856)
Q Consensus 263 fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~ 309 (856)
.+...-||+.+=|+.|.|++++ ...++..+|++.+....+...
T Consensus 15 ~lR~~RHD~~NhLqvI~gllql----g~~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQL----GKYEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999985 222345677777666655553
No 326
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=40.50 E-value=1.1e+02 Score=33.00 Aligned_cols=93 Identities=22% Similarity=0.201 Sum_probs=58.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhh----cCCE---EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKR----YGAA---VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~----~g~~---v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~ 783 (856)
-|||=|.+-...--+...+++ .++. -+.+++-+++.+.+. ..+|+|++|-.-| -.=-++.+.++.
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~--agaDiImLDNm~~-e~~~~av~~l~~----- 231 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALE--AGADIIMLDNMSP-EELKEAVKLLGL----- 231 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH--cCCCEEEecCCCH-HHHHHHHHHhcc-----
Confidence 355555444433335555554 3543 346889999999884 4689999995333 222223332210
Q ss_pred cccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeE
Q 003018 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830 (856)
Q Consensus 784 ~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~y 830 (856)
..-.++-.|+....+...+..+.|+|-+
T Consensus 232 -------------------~~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 232 -------------------AGRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred -------------------CCceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 1134788999999999999999999743
No 327
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=39.77 E-value=3.9e+02 Score=26.52 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 003018 214 TSIGILVIASLVGHIFQATVNR-----IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIR 272 (856)
Q Consensus 214 ~~~~~l~i~~l~~~~~~~~~~r-----~~~~~~~~~~~~~~~~~ae~a~~aks~fla~iSHElR 272 (856)
.++.++++++++.++++..+.. ...+........+.+.+++.....-.+-++..-.|..
T Consensus 24 ~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~ 87 (173)
T PRK13453 24 TVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQ 87 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555544433 3334444444444444443333322333444433433
No 328
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=39.54 E-value=3e+02 Score=29.14 Aligned_cols=86 Identities=15% Similarity=0.020 Sum_probs=59.3
Q ss_pred EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHh
Q 003018 739 VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818 (856)
Q Consensus 739 a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~ 818 (856)
.......++++. ...||.|+.|++=-.+|--++...|+..+. .....++=....+..+
T Consensus 19 ~~~~p~~~e~~~-~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~---------------------~g~~~~VRv~~~~~~~ 76 (249)
T TIGR02311 19 GLADPYAAEICA-GAGFDWLLIDGEHAPNDVRTILSQLQALAP---------------------YPSSPVVRPAIGDPVL 76 (249)
T ss_pred eCCCcHHHHHHH-hcCCCEEEEeccCCCCCHHHHHHHHHHHHh---------------------cCCCcEEECCCCCHHH
Confidence 334455566664 346999999999888888888888876421 1123343445556778
Q ss_pred HHHHHHcCCCeEEe-CCCCHHHHHHHHhh
Q 003018 819 YEECLRSGMDGYVS-KPFEAEQLYREVSR 846 (856)
Q Consensus 819 ~~~~~~aG~d~yl~-KP~~~~~L~~~l~~ 846 (856)
..+++++|+++.+. |--+.++..+.++.
T Consensus 77 i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~ 105 (249)
T TIGR02311 77 IKQLLDIGAQTLLVPMIETAEQAEAAVAA 105 (249)
T ss_pred HHHHhCCCCCEEEecCcCCHHHHHHHHHH
Confidence 99999999999865 55677777777654
No 329
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=39.54 E-value=2.3e+02 Score=28.07 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=48.4
Q ss_pred cCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCC--------CCCHHHHHHHHHhhcccccccccccccchhhhccCCC
Q 003018 732 YGAAVVC-VERGKKATELLMPPHQFDACFMDIQMP--------EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 802 (856)
Q Consensus 732 ~g~~v~~-a~~g~eA~~~l~~~~~~DlilmDi~MP--------~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~ 802 (856)
.+..+-. +.+..++.+... ..+|.|+.+.--| .-.|.+.++++++.
T Consensus 94 ~~~~~g~~~~t~~~~~~~~~--~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 148 (196)
T cd00564 94 PDLIIGVSTHSLEEALRAEE--LGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL----------------------- 148 (196)
T ss_pred CCCEEEeeCCCHHHHHHHhh--cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-----------------------
Confidence 3444333 345566665542 3589998764333 23457777777752
Q ss_pred CCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 803 FHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 803 ~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
.++||++.-+- ..+...++.++|++++..
T Consensus 149 ~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 149 VEIPVVAIGGI-TPENAAEVLAAGADGVAV 177 (196)
T ss_pred CCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 25788887654 578889999999998754
No 330
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=39.16 E-value=3.3e+02 Score=28.12 Aligned_cols=84 Identities=19% Similarity=0.172 Sum_probs=52.7
Q ss_pred HHHHHhhcCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCCC-------CCHHHHHHHHHhhcccccccccccccchhh
Q 003018 725 AAAGLKRYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMPE-------MDGFEATKIIREMEHNFNNRIRRGEVSIEA 796 (856)
Q Consensus 725 l~~~L~~~g~~v~~-a~~g~eA~~~l~~~~~~DlilmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~ 796 (856)
+...+++.+..+.. +.+..++..... ...|.|..+-.-+. ...++.++++|+.
T Consensus 94 ~~~~~~~~~i~~i~~v~~~~~~~~~~~--~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~----------------- 154 (236)
T cd04730 94 VVERLKAAGIKVIPTVTSVEEARKAEA--AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA----------------- 154 (236)
T ss_pred HHHHHHHcCCEEEEeCCCHHHHHHHHH--cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH-----------------
Confidence 33445556655443 345555544432 45788877542111 2457778888752
Q ss_pred hccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeC
Q 003018 797 YENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833 (856)
Q Consensus 797 ~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~K 833 (856)
..+||++.=+-...++..+++++|+|+.+.-
T Consensus 155 ------~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 155 ------VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred ------hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 2479998766666688999999999988654
No 331
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=38.63 E-value=79 Score=33.88 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=39.5
Q ss_pred CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCC------CHHhHHHHHHcCCCeEEeCCCCHHHHH
Q 003018 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV------IQATYEECLRSGMDGYVSKPFEAEQLY 841 (856)
Q Consensus 768 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~------~~~~~~~~~~aG~d~yl~KP~~~~~L~ 841 (856)
+.++.++++|+ ...+|+++||=.. .+....+|.++|+|+.+.--...++..
T Consensus 78 ~~~~~~~~~r~-----------------------~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~ 134 (263)
T CHL00200 78 KILSILSEVNG-----------------------EIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESD 134 (263)
T ss_pred HHHHHHHHHhc-----------------------CCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHH
Confidence 45788888884 2358988888653 356788999999999999876666654
Q ss_pred HHH
Q 003018 842 REV 844 (856)
Q Consensus 842 ~~l 844 (856)
..+
T Consensus 135 ~~~ 137 (263)
T CHL00200 135 YLI 137 (263)
T ss_pred HHH
Confidence 433
No 332
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=38.48 E-value=2.4e+02 Score=29.13 Aligned_cols=116 Identities=15% Similarity=0.178 Sum_probs=71.1
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v-~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
..+++++|++|..+...+..|. .++.+ ..+.+..+++..+. .++++++|..+...++ ...+...++... .
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G--~~~~~~~i~~~~--p 80 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKL--IHYWQDTLSRKN--N 80 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccH--HHHHHHHHHHhC--C
Confidence 4569999999999998888887 55543 35567777766532 3789999987754332 111122233221 1
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..+++++...... .........+...++.|+.....+..+++.+..
T Consensus 81 ~~~vvvlt~~~~~-~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~ 126 (216)
T PRK10100 81 NIKILLLNTPEDY-PYREIENWPHINGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred CCcEEEEECCchh-HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHc
Confidence 3456665543321 111111112556789999999999999988764
No 333
>PRK14974 cell division protein FtsY; Provisional
Probab=37.63 E-value=3.3e+02 Score=30.36 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=58.6
Q ss_pred CCeEEEEcCCH---HHHHHHHHHHhhcCCEEEEEcCH-------HHHHHHhCCCCCccEEEEeCCCCCCC--HHHHHHHH
Q 003018 709 GRKILIVDDNN---VNLKVAAAGLKRYGAAVVCVERG-------KKATELLMPPHQFDACFMDIQMPEMD--GFEATKII 776 (856)
Q Consensus 709 ~~~ILvVdDn~---~n~~~l~~~L~~~g~~v~~a~~g-------~eA~~~l~~~~~~DlilmDi~MP~md--G~e~~~~I 776 (856)
+.+|++++-+. .....+.......|..+.....| .+|++... ...+|+||+|-- +.. -.++..++
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~-~~~~DvVLIDTa--Gr~~~~~~lm~eL 244 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK-ARGIDVVLIDTA--GRMHTDANLMDEL 244 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH-hCCCCEEEEECC--CccCCcHHHHHHH
Confidence 45788887663 23344555566678777655443 24444443 346899999974 322 23445555
Q ss_pred HhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHH----HcCCCeEEeCCCC
Q 003018 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL----RSGMDGYVSKPFE 836 (856)
Q Consensus 777 R~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~----~aG~d~yl~KP~~ 836 (856)
+.+... ..++.-++++.|....+....+. ..|.++.|.==+|
T Consensus 245 ~~i~~~------------------~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD 290 (336)
T PRK14974 245 KKIVRV------------------TKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVD 290 (336)
T ss_pred HHHHHh------------------hCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeec
Confidence 543210 12344567777766554443322 2688887654343
No 334
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.57 E-value=2.5e+02 Score=30.27 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=47.8
Q ss_pred EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCC
Q 003018 736 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815 (856)
Q Consensus 736 v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~ 815 (856)
.+.+++-+||.+.+. ..+|+|.+|= | + ++.++++-++.+. ..+++ +|..++...
T Consensus 186 ~VEv~tleea~~A~~--~GaDiI~LDn-~---~-~e~l~~~v~~~~~------------------~~~~~-~ieAsGgIt 239 (273)
T PRK05848 186 EIECESLEEAKNAMN--AGADIVMCDN-M---S-VEEIKEVVAYRNA------------------NYPHV-LLEASGNIT 239 (273)
T ss_pred EEEeCCHHHHHHHHH--cCCCEEEECC-C---C-HHHHHHHHHHhhc------------------cCCCe-EEEEECCCC
Confidence 446789999999884 4689999885 2 2 4444444332110 11233 577899999
Q ss_pred HHhHHHHHHcCCCeEE
Q 003018 816 QATYEECLRSGMDGYV 831 (856)
Q Consensus 816 ~~~~~~~~~aG~d~yl 831 (856)
.+...++.+.|+|.+.
T Consensus 240 ~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 240 LENINAYAKSGVDAIS 255 (273)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 9999999999998765
No 335
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=37.12 E-value=1.2e+02 Score=31.53 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=46.2
Q ss_pred HHHHHHhCCCCCcc-EEEEeCCCCCC-CH--HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHh
Q 003018 743 KKATELLMPPHQFD-ACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818 (856)
Q Consensus 743 ~eA~~~l~~~~~~D-lilmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~ 818 (856)
.+..+.+. ...++ ++++|+..-++ .| +++++++++. ..+|||+-.+-.+.++
T Consensus 149 ~e~~~~~~-~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~-----------------------~~ipvia~GGi~~~~d 204 (233)
T PRK00748 149 EDLAKRFE-DAGVKAIIYTDISRDGTLSGPNVEATRELAAA-----------------------VPIPVIASGGVSSLDD 204 (233)
T ss_pred HHHHHHHH-hcCCCEEEEeeecCcCCcCCCCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHH
Confidence 34444442 23455 78888754222 33 6888888752 2489999888889999
Q ss_pred HHHHHHcC-CCeEEe
Q 003018 819 YEECLRSG-MDGYVS 832 (856)
Q Consensus 819 ~~~~~~aG-~d~yl~ 832 (856)
..++++.| +++.+.
T Consensus 205 i~~~~~~g~~~gv~v 219 (233)
T PRK00748 205 IKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHcCCccEEEE
Confidence 99999998 999875
No 336
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=36.97 E-value=1.2e+02 Score=32.86 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=50.7
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCC
Q 003018 735 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814 (856)
Q Consensus 735 ~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 814 (856)
..+.+.+-++|.+.+. ..+|+|++| +|+.-+=-++.+.+++. .++ .++..++..
T Consensus 192 IeVEv~tleqa~ea~~--agaDiI~LD-n~~~e~l~~av~~~~~~----------------------~~~-~~leaSGGI 245 (284)
T PRK06096 192 IVVEADTPKEAIAALR--AQPDVLQLD-KFSPQQATEIAQIAPSL----------------------APH-CTLSLAGGI 245 (284)
T ss_pred EEEECCCHHHHHHHHH--cCCCEEEEC-CCCHHHHHHHHHHhhcc----------------------CCC-eEEEEECCC
Confidence 4556789999999884 458999999 55444444444444421 112 468899999
Q ss_pred CHHhHHHHHHcCCCeEE
Q 003018 815 IQATYEECLRSGMDGYV 831 (856)
Q Consensus 815 ~~~~~~~~~~aG~d~yl 831 (856)
..+...+..+.|+|-..
T Consensus 246 ~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 246 NLNTLKNYADCGIRLFI 262 (284)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998654
No 337
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=36.74 E-value=1.4e+02 Score=20.49 Aligned_cols=50 Identities=24% Similarity=0.425 Sum_probs=36.5
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEee
Q 003018 563 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVE 614 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d 614 (856)
+++++++++.........+...|+++....+...+...+... .++.++++
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~ 51 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE--KPDLILLD 51 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhc--CCCEEEEe
Confidence 578888888888888888889999988888887776655332 34444443
No 338
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=36.72 E-value=4e+02 Score=28.65 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=56.4
Q ss_pred CeEEEEcCCHH---HHHHHHHHHhhcCCEEEEEcCHH---HHHHHhCCCCCccEEEEeCCCCCCC--HHHHHHHHHhhcc
Q 003018 710 RKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERGK---KATELLMPPHQFDACFMDIQMPEMD--GFEATKIIREMEH 781 (856)
Q Consensus 710 ~~ILvVdDn~~---n~~~l~~~L~~~g~~v~~a~~g~---eA~~~l~~~~~~DlilmDi~MP~md--G~e~~~~IR~~~~ 781 (856)
.++.+++-+.. ....++...+..|+.+..+.+.. ++++.+.....+|+||+|. |+.. .-+.++++++...
T Consensus 104 ~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt--~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 104 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT--AGKNYRASETVEEMIETMG 181 (270)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEEC--CCCCcCCHHHHHHHHHHHh
Confidence 45666655432 22334455556788888776653 3444443334699999997 3322 2334444444211
Q ss_pred cccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHH----HHcCCCeEEeCCCC
Q 003018 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC----LRSGMDGYVSKPFE 836 (856)
Q Consensus 782 ~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~----~~aG~d~yl~KP~~ 836 (856)
. ..+.-.+++++|.....+..+. -..+.++.|.==+|
T Consensus 182 ~------------------~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TKlD 222 (270)
T PRK06731 182 Q------------------VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 222 (270)
T ss_pred h------------------hCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEeec
Confidence 0 1122346778776655444332 23577777644333
No 339
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=36.63 E-value=3.2e+02 Score=28.21 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=43.7
Q ss_pred HHHHHhCCCCCcc-EEEEeCCCCCC---CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhH
Q 003018 744 KATELLMPPHQFD-ACFMDIQMPEM---DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 819 (856)
Q Consensus 744 eA~~~l~~~~~~D-lilmDi~MP~m---dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~ 819 (856)
+.++.+.. ...| ++++|+..-++ -.+++++++++. ..+||++--+-...++.
T Consensus 150 ~~~~~~~~-~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-----------------------~~ipvi~~GGi~~~~di 205 (234)
T cd04732 150 ELAKRFEE-LGVKAIIYTDISRDGTLSGPNFELYKELAAA-----------------------TGIPVIASGGVSSLDDI 205 (234)
T ss_pred HHHHHHHH-cCCCEEEEEeecCCCccCCCCHHHHHHHHHh-----------------------cCCCEEEecCCCCHHHH
Confidence 44444432 2344 56777743221 226777888752 25899998888888999
Q ss_pred HHHHHcCCCeEEe
Q 003018 820 EECLRSGMDGYVS 832 (856)
Q Consensus 820 ~~~~~aG~d~yl~ 832 (856)
.++++.|+++.+.
T Consensus 206 ~~~~~~Ga~gv~v 218 (234)
T cd04732 206 KALKELGVAGVIV 218 (234)
T ss_pred HHHHHCCCCEEEE
Confidence 9999999999764
No 340
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=36.39 E-value=5.5e+02 Score=27.26 Aligned_cols=27 Identities=11% Similarity=0.322 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003018 210 LAISTSIGILVIASLVGHIFQATVNRI 236 (856)
Q Consensus 210 ~~~~~~~~~l~i~~l~~~~~~~~~~r~ 236 (856)
+.+..++-++++++++.++++..+..+
T Consensus 7 t~~~qiInFlILv~lL~~fl~kPi~~~ 33 (250)
T PRK14474 7 TVVAQIINFLILVYLLRRFLYKPIIQV 33 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566666666655443
No 341
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=36.23 E-value=3.9e+02 Score=29.52 Aligned_cols=92 Identities=20% Similarity=0.190 Sum_probs=60.2
Q ss_pred HHhhcCCEE--EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH-----HHHHHHHHhhcccccccccccccchhhhccC
Q 003018 728 GLKRYGAAV--VCVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIREMEHNFNNRIRRGEVSIEAYENV 800 (856)
Q Consensus 728 ~L~~~g~~v--~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG-----~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~ 800 (856)
.|-+.|+.| .|++|...|-.+.. -.+ +.+|=+--|.-.| -+.++.+++.
T Consensus 192 ~L~~~Gf~v~~yc~~d~~~a~~l~~--~g~-~avmPl~~pIGsg~gv~~p~~i~~~~e~--------------------- 247 (326)
T PRK11840 192 ILVKEGFQVMVYCSDDPIAAKRLED--AGA-VAVMPLGAPIGSGLGIQNPYTIRLIVEG--------------------- 247 (326)
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHh--cCC-EEEeeccccccCCCCCCCHHHHHHHHHc---------------------
Confidence 344569987 57778777776653 233 5555433333333 4556666542
Q ss_pred CCCCCcEEEEecCCCHHhHHHHHHcCCCeEE-----eCCCCHHHHHHHHh
Q 003018 801 SNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREVS 845 (856)
Q Consensus 801 ~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~~~l~ 845 (856)
..+|||.=.+-...++..++++.|+|+.+ .|-=++-.+.++.+
T Consensus 248 --~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~ 295 (326)
T PRK11840 248 --ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMK 295 (326)
T ss_pred --CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHH
Confidence 35899988888889999999999999985 45556655555543
No 342
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=35.88 E-value=49 Score=34.10 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.8
Q ss_pred EeecHHHHHHHHHHHHHHHhhcCC
Q 003018 369 LIGDPGRFRQIITNLMGNSIKFTE 392 (856)
Q Consensus 369 v~~D~~rl~qIl~NLl~NAiKfT~ 392 (856)
+-|||.|-+-|-.|++.|++++++
T Consensus 19 mPGDPlRAK~iAetfLe~~~~vne 42 (236)
T COG0813 19 MPGDPLRAKYIAETFLENAVCVNE 42 (236)
T ss_pred cCCCCchHHHHHHHHHhhhhhhhh
Confidence 348999999999999999999984
No 343
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=35.02 E-value=1.1e+02 Score=33.97 Aligned_cols=67 Identities=13% Similarity=0.024 Sum_probs=44.8
Q ss_pred HHHHHHHhCCCCCccEEEEeCCCCCCCH-HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHH
Q 003018 742 GKKATELLMPPHQFDACFMDIQMPEMDG-FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820 (856)
Q Consensus 742 g~eA~~~l~~~~~~DlilmDi~MP~mdG-~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~ 820 (856)
.+++.+++...-..|+|.+|+.-+..+. .|++++||+. .+.+|||+=.- .+.++..
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~----------------------~p~~~vi~g~V-~t~e~a~ 155 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKH----------------------LPETFVIAGNV-GTPEAVR 155 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhh----------------------CCCCeEEEEec-CCHHHHH
Confidence 3556666632113599999998865433 4567778762 23577776322 2677888
Q ss_pred HHHHcCCCeEE
Q 003018 821 ECLRSGMDGYV 831 (856)
Q Consensus 821 ~~~~aG~d~yl 831 (856)
.+.++|+|...
T Consensus 156 ~l~~aGad~i~ 166 (326)
T PRK05458 156 ELENAGADATK 166 (326)
T ss_pred HHHHcCcCEEE
Confidence 99999999865
No 344
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=34.95 E-value=4e+02 Score=30.56 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=58.0
Q ss_pred CCeEEEEcCCHH---HHHHHHHHHhhcCCEEEEEcCHHHH---HHHhCCCCCccEEEEeCCCCCCCH--HHHHHHHHhhc
Q 003018 709 GRKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPEMDG--FEATKIIREME 780 (856)
Q Consensus 709 ~~~ILvVdDn~~---n~~~l~~~L~~~g~~v~~a~~g~eA---~~~l~~~~~~DlilmDi~MP~mdG--~e~~~~IR~~~ 780 (856)
++++++++-++. -...++.+-+..|+.+..+.+..+. ++.+.....+|+||+|- |+.+- .+.++++++.-
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT--aGRs~kd~~lm~EL~~~l 346 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT--AGKNYRASETVEEMIETM 346 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC--ccccCcCHHHHHHHHHHH
Confidence 467888887653 2233444444568888777665544 33333223699999996 33322 33344454421
Q ss_pred ccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHH---HH-HcCCCeEEeCCCC
Q 003018 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE---CL-RSGMDGYVSKPFE 836 (856)
Q Consensus 781 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~---~~-~aG~d~yl~KP~~ 836 (856)
.. ..++-.+++++|.....+..+ .+ ..|.+++|.==+|
T Consensus 347 k~------------------~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLD 388 (436)
T PRK11889 347 GQ------------------VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 388 (436)
T ss_pred hh------------------cCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEccc
Confidence 10 122334667777655444332 22 4588887654444
No 345
>PRK11677 hypothetical protein; Provisional
Probab=34.64 E-value=2.2e+02 Score=27.27 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 003018 220 VIASLVGHIFQ 230 (856)
Q Consensus 220 ~i~~l~~~~~~ 230 (856)
++.+++|+++.
T Consensus 11 ivG~iiG~~~~ 21 (134)
T PRK11677 11 VVGIIIGAVAM 21 (134)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 346
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=34.44 E-value=3.8e+02 Score=28.82 Aligned_cols=109 Identities=15% Similarity=0.231 Sum_probs=57.5
Q ss_pred CCeEEEEcCCHH---HHHHHHHHHhhcCCEEEEEcCH-------HHHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHHH
Q 003018 709 GRKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERG-------KKATELLMPPHQFDACFMDIQMPEMDG--FEATKII 776 (856)
Q Consensus 709 ~~~ILvVdDn~~---n~~~l~~~L~~~g~~v~~a~~g-------~eA~~~l~~~~~~DlilmDi~MP~mdG--~e~~~~I 776 (856)
+++|+++|-+.. ...-+....++.|..+.....+ .++++... ...||+||+|. |+... -....++
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~-~~~~D~ViIDT--~G~~~~d~~~~~el 176 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK-ARNIDVVLIDT--AGRLQNKVNLMDEL 176 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH-HCCCCEEEEeC--CCCCcchHHHHHHH
Confidence 568999986642 2344555667778666554333 13333332 35699999997 33322 2333444
Q ss_pred HhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHH----cCCCeEEe
Q 003018 777 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR----SGMDGYVS 832 (856)
Q Consensus 777 R~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~----aG~d~yl~ 832 (856)
+++..-.... -...++-.++++.+....+....+.. .|.++.|.
T Consensus 177 ~~~~~~~~~~------------~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 177 KKIKRVIKKV------------DKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred HHHHHHHhcc------------cCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEE
Confidence 4332100000 00123456788888776655444332 56777654
No 347
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=34.06 E-value=1.6e+02 Score=31.02 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=25.2
Q ss_pred CCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 804 HVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 804 ~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
.+|||+.=.-.+.++..+++++|+|+...
T Consensus 191 ~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 191 DKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 48999988888889999999999998864
No 348
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=33.57 E-value=3.5e+02 Score=27.28 Aligned_cols=92 Identities=20% Similarity=0.255 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCCCH-------HHHHHHHHhhccccccccccc
Q 003018 721 NLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEMDG-------FEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 721 n~~~l~~~L~~~g~~v~~a---~~g~eA~~~l~~~~~~DlilmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~~~g 790 (856)
........+++.|..+... .+..+.++.+.. ..|.|+.+-.-|+..| ++.++++|++-.+
T Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~--~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~-------- 161 (210)
T TIGR01163 92 HIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLP--DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDE-------- 161 (210)
T ss_pred hHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHh--hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHh--------
Confidence 3334446666677654432 345666665532 3577766544454444 3444555543210
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~K 833 (856)
..+++||+ +.+....+...++.+.|+|.++.-
T Consensus 162 ----------~~~~~~i~-v~GGI~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 162 ----------NGLSILIE-VDGGVNDDNARELAEAGADILVAG 193 (210)
T ss_pred ----------cCCCceEE-EECCcCHHHHHHHHHcCCCEEEEC
Confidence 12345654 455566788889999999988653
No 349
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=32.93 E-value=1e+02 Score=31.08 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=34.5
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 003018 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760 (856)
Q Consensus 712 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~Dlilm 760 (856)
|||||-..-.-.-+..+|++.|+.+....+....++.+. ...||.|++
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iil 49 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIE-ALLPLLIVI 49 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHH-hcCCCEEEE
Confidence 899999988888899999999999888775432233332 235785554
No 350
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=31.68 E-value=43 Score=39.97 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=19.6
Q ss_pred EEEEEecCCCCChhhHhhhcCcccc
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTPFMQ 485 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~pF~q 485 (856)
.|+|.|+|.||++...+-+-.+++.
T Consensus 51 ~IEV~DNG~GI~~~n~~~l~lkh~T 75 (672)
T KOG1978|consen 51 SIEVSDNGSGISATDFEGLALKHTT 75 (672)
T ss_pred eEEEecCCCCCCccchhhhhhhhhh
Confidence 3899999999999887766555543
No 351
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=31.64 E-value=89 Score=33.08 Aligned_cols=68 Identities=13% Similarity=0.237 Sum_probs=48.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCC-----E-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH-----HHHHHHHHh
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGA-----A-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIRE 778 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~-----~-v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG-----~e~~~~IR~ 778 (856)
.+|-+||=++...++++..+..... . -....||..-++.... ..||+|++|+.-|...+ .|+.+.+++
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~-~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~ 179 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE-EKYDVIIVDLTDPDGPAPNLFTREFYQLCKR 179 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS-T-EEEEEEESSSTTSCGGGGSSHHHHHHHHH
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC-CcccEEEEeCCCCCCCcccccCHHHHHHHHh
Confidence 4799999999999999998875321 2 3367899998887532 27999999998887555 355666654
No 352
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=31.40 E-value=3.6e+02 Score=31.13 Aligned_cols=109 Identities=13% Similarity=0.129 Sum_probs=59.2
Q ss_pred CCeEEEEcCCHHH---HHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHH--HHHHHHHhhcccc
Q 003018 709 GRKILIVDDNNVN---LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF--EATKIIREMEHNF 783 (856)
Q Consensus 709 ~~~ILvVdDn~~n---~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~--e~~~~IR~~~~~~ 783 (856)
+++|.+|+-++.- ...+..+-+..|+.+..+.+..+....+..-..+|+||+|. |++... ..+..++++-..
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~DlVlIDt--~G~~~~d~~~~~~L~~ll~~- 327 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDVILIDT--AGRSQRDKRLIEELKALIEF- 327 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCEEEEeC--CCCCCCCHHHHHHHHHHHhc-
Confidence 4689999887632 12233334446777777777665554443334689999996 333222 223344432110
Q ss_pred cccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHH----HcCCCeEEeCCCC
Q 003018 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL----RSGMDGYVSKPFE 836 (856)
Q Consensus 784 ~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~----~aG~d~yl~KP~~ 836 (856)
...+.-..+++++.....+..+.. ..|.+.+|.--++
T Consensus 328 ----------------~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlD 368 (424)
T PRK05703 328 ----------------SGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLD 368 (424)
T ss_pred ----------------cCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEeccc
Confidence 001123367788877776665543 3466666543343
No 353
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=31.31 E-value=2.2e+02 Score=29.92 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=47.1
Q ss_pred CCeEEEE------cCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 003018 709 GRKILIV------DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778 (856)
Q Consensus 709 ~~~ILvV------dDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 778 (856)
+++|++| +|........+..+++.|+++.......+..+.+. ..|+|++ ++-|-+.+++.+|.
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~---~ad~I~v----~GGnt~~l~~~l~~ 99 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIE---NAEAIFV----GGGNTFQLLKQLYE 99 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHh---cCCEEEE----CCccHHHHHHHHHH
Confidence 3567776 45455556788999999999998888777777663 4688875 77888888888775
No 354
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=31.27 E-value=56 Score=33.25 Aligned_cols=49 Identities=14% Similarity=0.107 Sum_probs=37.7
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEe
Q 003018 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761 (856)
Q Consensus 712 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmD 761 (856)
|||||.+.-.-.-+...|++.|+++....+.+..++.+. ...||.|++-
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iIls 50 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIE-NMKPDFLMIS 50 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHh-hCCCCEEEEC
Confidence 899999988888899999999999998877644444442 2468887763
No 355
>PRK12704 phosphodiesterase; Provisional
Probab=31.23 E-value=43 Score=39.65 Aligned_cols=43 Identities=7% Similarity=-0.035 Sum_probs=36.9
Q ss_pred cEEEEecCCCHH--hHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 806 PILAMTADVIQA--TYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 806 pIIalTa~~~~~--~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+|++|+..... ....+++.|+.|+..||+..+++...+.+-+
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~ 295 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEV 295 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHH
Confidence 478899977765 8889999999999999999999998887643
No 356
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=31.07 E-value=1.7e+02 Score=30.02 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=29.2
Q ss_pred CCcEEEEecCCCHHhHHHHHHcCCCeEE--eCCCCHHHHHHHHhh
Q 003018 804 HVPILAMTADVIQATYEECLRSGMDGYV--SKPFEAEQLYREVSR 846 (856)
Q Consensus 804 ~~pIIalTa~~~~~~~~~~~~aG~d~yl--~KP~~~~~L~~~l~~ 846 (856)
.+||++...-......+.|.++|+|+.+ ..-+..+.+...++.
T Consensus 72 ~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~ 116 (217)
T cd00331 72 SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYEL 116 (217)
T ss_pred CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHH
Confidence 5899977654566688899999999997 333344555544443
No 357
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=31.04 E-value=3.3e+02 Score=29.85 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=58.3
Q ss_pred HHHHHhhcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCC---C--CCCCHHHHHHHHHhhcccccccccccccchhhhc
Q 003018 725 AAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQ---M--PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYE 798 (856)
Q Consensus 725 l~~~L~~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~---M--P~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~ 798 (856)
+-..++..|..|. .+.+.++|..... ...|.|+..-. . ....-+++++++++.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~--~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~------------------- 159 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEK--AGADAVIAEGMESGGHIGELTTMALVPQVVDA------------------- 159 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHH--cCCCEEEEECcccCCCCCCCcHHHHHHHHHHH-------------------
Confidence 5566777787754 4677777776653 45899887432 1 122347788888752
Q ss_pred cCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 799 NVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 799 ~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
.++|||+--+-.+.++..+++..|+|+...
T Consensus 160 ----~~iPviaaGGI~~~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 160 ----VSIPVIAAGGIADGRGMAAAFALGAEAVQM 189 (307)
T ss_pred ----hCCCEEEECCCCCHHHHHHHHHcCCCEeec
Confidence 248999888888888899999999998754
No 358
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=31.00 E-value=5e+02 Score=25.20 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003018 215 SIGILVIASLVGHIFQATVNR 235 (856)
Q Consensus 215 ~~~~l~i~~l~~~~~~~~~~r 235 (856)
++.++++++++.++++..+..
T Consensus 12 ~inF~il~~iL~~f~~kpi~~ 32 (159)
T PRK13461 12 IINFIILLLILKHFFFDKIKA 32 (159)
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 334444444455555544443
No 359
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.99 E-value=4.6e+02 Score=24.72 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 003018 297 YVRTAQASGKAL 308 (856)
Q Consensus 297 ~l~~i~~~~~~L 308 (856)
..+.+..+++.|
T Consensus 69 l~~Hla~~a~~L 80 (128)
T PF06295_consen 69 LYQHLAKGAEEL 80 (128)
T ss_pred HHHHHHHHHHHh
Confidence 334444444443
No 360
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=30.65 E-value=3.4e+02 Score=28.68 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=33.1
Q ss_pred CCcEEEEecCCCHHhHHHHHHcC-CCeEEe------CCCCHHHHHHHHh
Q 003018 804 HVPILAMTADVIQATYEECLRSG-MDGYVS------KPFEAEQLYREVS 845 (856)
Q Consensus 804 ~~pIIalTa~~~~~~~~~~~~aG-~d~yl~------KP~~~~~L~~~l~ 845 (856)
.+|||+.-+-.+.++..++++.| +++.+. +=++.+++...++
T Consensus 199 ~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 199 KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 58999999999999999999988 999544 4466666665554
No 361
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=30.45 E-value=6.5e+02 Score=27.92 Aligned_cols=79 Identities=11% Similarity=0.228 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 003018 237 AKVEEDYHGMME----LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 312 (856)
Q Consensus 237 ~~~~~~~~~~~~----~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lI 312 (856)
..++++++++++ -++++++..+..+.-.+.++|..+. |..+...+.-+... .+.+..+.++.++...++....+
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkkr-Lk~L~~sLk~~~~~-~~~e~~~~i~~L~~~Ik~r~~~l 84 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKR-LKELKKSLKRCKKS-LSAEERELIEKLEEDIKERRCQL 84 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHHhhH
Confidence 344555555444 3557777788888899999999885 45565555555433 45566677777777766666666
Q ss_pred HHHHH
Q 003018 313 NEVLD 317 (856)
Q Consensus 313 ndlLd 317 (856)
.|+=.
T Consensus 85 ~DmEa 89 (330)
T PF07851_consen 85 FDMEA 89 (330)
T ss_pred HHHHh
Confidence 65543
No 362
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=30.34 E-value=1.4e+02 Score=30.06 Aligned_cols=67 Identities=9% Similarity=0.075 Sum_probs=43.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCE--EE-EEcCHHHHHHHhCC-CCCccEEEEeCCCCCCCHHHHHHHH
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP-PHQFDACFMDIQMPEMDGFEATKII 776 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~--v~-~a~~g~eA~~~l~~-~~~~DlilmDi~MP~mdG~e~~~~I 776 (856)
.++..||.++.....++.-++..|+. +. ...|..+++..+.. ...||+|++|-=...-.-.+++..+
T Consensus 73 ~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l 143 (189)
T TIGR00095 73 KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELC 143 (189)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHH
Confidence 37999999999999999999887763 33 34455555554422 2348999999644322223344444
No 363
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=30.15 E-value=5e+02 Score=26.07 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=49.6
Q ss_pred HHHHhhcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCCCH-------HHHHHHHHhhcccccccccccccchh
Q 003018 726 AAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMDG-------FEATKIIREMEHNFNNRIRRGEVSIE 795 (856)
Q Consensus 726 ~~~L~~~g~~v~~a~---~g~eA~~~l~~~~~~DlilmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~~~g~~~~~ 795 (856)
...+++.|..+.... +..+.++.+.. ..|.++.+...|+-+| .+..+++|++-.
T Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~-------------- 161 (211)
T cd00429 98 IQLIKELGMKAGVALNPGTPVEVLEPYLD--EVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIP-------------- 161 (211)
T ss_pred HHHHHHCCCeEEEEecCCCCHHHHHHHHh--hCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHH--------------
Confidence 444555666543322 23444554422 2688877765565544 344555554311
Q ss_pred hhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeC
Q 003018 796 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833 (856)
Q Consensus 796 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~K 833 (856)
...+++||+ +.+....+...++.++|+|+++.-
T Consensus 162 ----~~~~~~pi~-v~GGI~~env~~~~~~gad~iivg 194 (211)
T cd00429 162 ----ENNLNLLIE-VDGGINLETIPLLAEAGADVLVAG 194 (211)
T ss_pred ----hcCCCeEEE-EECCCCHHHHHHHHHcCCCEEEEC
Confidence 012346764 455666788899999999998753
No 364
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=30.08 E-value=3.7e+02 Score=30.71 Aligned_cols=53 Identities=17% Similarity=0.338 Sum_probs=40.8
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHhhcCCEEEEEcC--HHHHHHHhCCCCCccEEEEeC
Q 003018 709 GRKILIVDD-NNVNLKVAAAGLKRYGAAVVCVER--GKKATELLMPPHQFDACFMDI 762 (856)
Q Consensus 709 ~~~ILvVdD-n~~n~~~l~~~L~~~g~~v~~a~~--g~eA~~~l~~~~~~DlilmDi 762 (856)
|-+||+.+| -.-.++.+..+|+++|++|..+.. +.+..+.+. +.+.++|++.-
T Consensus 102 GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~-~~~tk~v~lEt 157 (396)
T COG0626 102 GDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIK-EPNTKLVFLET 157 (396)
T ss_pred CCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhc-ccCceEEEEeC
Confidence 568999888 667789999999999999998874 444555553 24689999884
No 365
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=29.71 E-value=6.3e+02 Score=25.92 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003018 235 RIAKVEEDYHGMMELKKKAEAAD 257 (856)
Q Consensus 235 r~~~~~~~~~~~~~~~~~ae~a~ 257 (856)
|..++..++....+.+.+++...
T Consensus 85 R~~~I~~~L~~Ae~~k~eAe~~~ 107 (204)
T PRK09174 85 RRDRIAQDLDQAARLKQEADAAV 107 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 366
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=29.69 E-value=2e+02 Score=31.02 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=24.0
Q ss_pred CCcEE--EEecCCCHHhHHHHHHcCCCeEEe
Q 003018 804 HVPIL--AMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 804 ~~pII--alTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
.+||| +.-+-..+++..+++++|+++++.
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~GAdgVaV 224 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLGADGVFV 224 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 48997 666656899999999999999854
No 367
>PLN02335 anthranilate synthase
Probab=29.55 E-value=86 Score=32.64 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=33.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEe
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmD 761 (856)
.++|||||-..-.-..+...|++.|+.+..+.+....++.+. ...||.|++-
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~-~~~~d~iVis 69 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELK-RKNPRGVLIS 69 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHH-hcCCCEEEEc
Confidence 468999985444556688888989999888775421123232 2357776653
No 368
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=29.45 E-value=5.5e+02 Score=25.11 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003018 210 LAISTSIGILVIASLVGHIFQATVNR 235 (856)
Q Consensus 210 ~~~~~~~~~l~i~~l~~~~~~~~~~r 235 (856)
..+..++.++++++++.++++..+..
T Consensus 10 ~~~~~~inflil~~lL~~fl~kpi~~ 35 (164)
T PRK14473 10 LLIAQLINFLLLIFLLRTFLYRPVLN 35 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555556666666655544
No 369
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=29.41 E-value=5.1e+02 Score=24.77 Aligned_cols=24 Identities=8% Similarity=0.220 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003018 212 ISTSIGILVIASLVGHIFQATVNR 235 (856)
Q Consensus 212 ~~~~~~~l~i~~l~~~~~~~~~~r 235 (856)
+..++.++++.+++..+++..+..
T Consensus 11 ~~qli~Flil~~~l~kfl~kPi~~ 34 (141)
T PRK08476 11 LATFVVFLLLIVILNSWLYKPLLK 34 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555565555543
No 370
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=29.22 E-value=2.9e+02 Score=26.94 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=39.4
Q ss_pred CCccEEEEeCCCCCCCHH-------HHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHc
Q 003018 753 HQFDACFMDIQMPEMDGF-------EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 825 (856)
Q Consensus 753 ~~~DlilmDi~MP~mdG~-------e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~a 825 (856)
...|.+.++-..+...+. ...+.++. ...+||++..+-...++..+++++
T Consensus 135 ~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~pi~~~GGi~~~~~~~~~~~~ 191 (200)
T cd04722 135 AGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR-----------------------GSKVPVIAGGGINDPEDAAEALAL 191 (200)
T ss_pred cCCCEEEEcCCcCCCCCccCchhHHHHHHHHHh-----------------------cCCCCEEEECCCCCHHHHHHHHHh
Confidence 357999888877754432 22333332 235899987777666999999999
Q ss_pred CCCeEEe
Q 003018 826 GMDGYVS 832 (856)
Q Consensus 826 G~d~yl~ 832 (856)
|+|.+..
T Consensus 192 Gad~v~v 198 (200)
T cd04722 192 GADGVIV 198 (200)
T ss_pred CCCEEEe
Confidence 9998763
No 371
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=29.10 E-value=79 Score=34.04 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=37.7
Q ss_pred CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEE--EEecCCCHHhHHHHHHcCCCeEE-----eCCCCHHHH
Q 003018 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL--AMTADVIQATYEECLRSGMDGYV-----SKPFEAEQL 840 (856)
Q Consensus 768 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pII--alTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L 840 (856)
-|+++++++++. ..+||| +.-+-..+++...++++|+|++. .|.-++.+.
T Consensus 184 ~~~elLkei~~~-----------------------~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~ 240 (287)
T TIGR00343 184 VPVELLLEVLKL-----------------------GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKL 240 (287)
T ss_pred CCHHHHHHHHHh-----------------------CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHH
Confidence 567888877752 258998 66666689999999999999984 444455544
Q ss_pred HH
Q 003018 841 YR 842 (856)
Q Consensus 841 ~~ 842 (856)
.+
T Consensus 241 ak 242 (287)
T TIGR00343 241 AK 242 (287)
T ss_pred HH
Confidence 33
No 372
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=28.76 E-value=7.1e+02 Score=26.45 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=54.9
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCEEEEE--c-CHHHHHHHhCC-CCCccEEEEeCCCCCC---------CHHHHHHHHHh
Q 003018 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCV--E-RGKKATELLMP-PHQFDACFMDIQMPEM---------DGFEATKIIRE 778 (856)
Q Consensus 712 ILvVdDn~~n~~~l~~~L~~~g~~v~~a--~-~g~eA~~~l~~-~~~~DlilmDi~MP~m---------dG~e~~~~IR~ 778 (856)
|++.|--......+...++++|.....+ . +..+-+..+.. ...|.+++. . + +- +-.+.++++|+
T Consensus 119 viipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs-~-~-G~TG~~~~~~~~~~~~i~~lr~ 195 (256)
T TIGR00262 119 VLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS-R-A-GVTGARNRAASALNELVKRLKA 195 (256)
T ss_pred EEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE-C-C-CCCCCcccCChhHHHHHHHHHh
Confidence 5555554445566777788889764432 2 22333333322 223555443 2 1 21 23556666665
Q ss_pred hcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCC
Q 003018 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834 (856)
Q Consensus 779 ~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP 834 (856)
. ...||++=-+-...++..++.++|+|+++.-.
T Consensus 196 ~-----------------------~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 196 Y-----------------------SAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred h-----------------------cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 2 24576653333348899999999999998764
No 373
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=28.58 E-value=3.2e+02 Score=33.95 Aligned_cols=105 Identities=12% Similarity=0.152 Sum_probs=72.3
Q ss_pred HHHHHHHhhcCCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCCC-C----CCHHHHHHHHHhhcccccccccccccchh
Q 003018 723 KVAAAGLKRYGAAVVC--VERGKKATELLMPPHQFDACFMDIQMP-E----MDGFEATKIIREMEHNFNNRIRRGEVSIE 795 (856)
Q Consensus 723 ~~l~~~L~~~g~~v~~--a~~g~eA~~~l~~~~~~DlilmDi~MP-~----mdG~e~~~~IR~~~~~~~~~~~~g~~~~~ 795 (856)
......|++.|+.+.. +.+|...+..+. .-++|.|=+|-..= . -....+++.|..+-+
T Consensus 681 ~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~-~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 745 (799)
T PRK11359 681 FKRIQILRDMGVGLSVDDFGTGFSGLSRLV-SLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQ-------------- 745 (799)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHh-hCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHH--------------
Confidence 4455678889998866 567777788774 46799999996431 1 112334454443221
Q ss_pred hhccCCCCCCcEEEEecCCCHHhHHHHHHcCCC----eEEeCCCCHHHHHHHHhhhCC
Q 003018 796 AYENVSNFHVPILAMTADVIQATYEECLRSGMD----GYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 796 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d----~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.-++.+| .++-.+.+....+.+.|+| .|+.||...++|...|++|.+
T Consensus 746 ------~~~i~vi-a~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~~~ 796 (799)
T PRK11359 746 ------SLNLTVV-AEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLP 796 (799)
T ss_pred ------HCCCeEE-EEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhccc
Confidence 1234444 5677778888889999998 468899999999999988844
No 374
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=28.51 E-value=2.1e+02 Score=30.32 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=41.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhCC----CCCccEEEEeCC
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMP----PHQFDACFMDIQ 763 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~--~v~-~a~~g~eA~~~l~~----~~~~DlilmDi~ 763 (856)
.+|.-+|-++.....++..+++.|+ .|. ...+..+.+..+.. ...||+||+|..
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 4799999999999999999999985 343 34566666665532 257999999986
No 375
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=28.33 E-value=87 Score=34.10 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=40.1
Q ss_pred CCcEEEEecCCCHHhHHHHHHcCCCe------EEeCCCCHHHHHHHHhhhCCC
Q 003018 804 HVPILAMTADVIQATYEECLRSGMDG------YVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 804 ~~pIIalTa~~~~~~~~~~~~aG~d~------yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+|||+.-.-.+.++..+++.+|+|. ++.+|.-..++.+.+.+|+..
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~ 286 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKA 286 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHH
Confidence 48999998888999999999999996 678897778888888887754
No 376
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.15 E-value=5.4e+02 Score=29.31 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=62.0
Q ss_pred CCeEEEEcCCHHH---HHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCC--CCCCCHHHHHHHHHhhcccc
Q 003018 709 GRKILIVDDNNVN---LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ--MPEMDGFEATKIIREMEHNF 783 (856)
Q Consensus 709 ~~~ILvVdDn~~n---~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~--MP~mdG~e~~~~IR~~~~~~ 783 (856)
+++|.+|+-|..- ...++.+.+..|..+..+.+..+....+.....+|+||+|-- +| .|-.. +.+++++-..
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~~DlVLIDTaGr~~-~~~~~-l~el~~~l~~- 282 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLVDTIGKSP-KDFMK-LAEMKELLNA- 282 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCCCCEEEEcCCCCCc-cCHHH-HHHHHHHHHh-
Confidence 4678888877632 222444444567778777776655444433356999999973 22 24333 3444433110
Q ss_pred cccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHH----cCCCeEEeCCCC
Q 003018 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR----SGMDGYVSKPFE 836 (856)
Q Consensus 784 ~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~----aG~d~yl~KP~~ 836 (856)
...+.-.+++++|.....+..+.++ .|.+++|.==+|
T Consensus 283 ----------------~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlD 323 (388)
T PRK12723 283 ----------------CGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLD 323 (388)
T ss_pred ----------------cCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEecc
Confidence 0111235788999888777765543 457777543333
No 377
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=27.94 E-value=4e+02 Score=26.89 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=35.5
Q ss_pred CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcE-EEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhh
Q 003018 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPI-LAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846 (856)
Q Consensus 768 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pI-IalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~ 846 (856)
-|++.+++||+. ...|+ +.+...........|.++|+|+.+.-....++....++.
T Consensus 43 ~~~~~v~~i~~~-----------------------~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~ 99 (210)
T TIGR01163 43 FGPPVLEALRKY-----------------------TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQL 99 (210)
T ss_pred cCHHHHHHHHhc-----------------------CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHH
Confidence 578889999862 13455 324444456677888899999977765544444444433
No 378
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=27.93 E-value=3.3e+02 Score=26.48 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhhcCCE
Q 003018 708 LGRKILIVDDNNVNLKVAAAGLKRYGAA 735 (856)
Q Consensus 708 ~~~~ILvVdDn~~n~~~l~~~L~~~g~~ 735 (856)
.++|+||..--.+....+..+|+..++.
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~ 59 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVR 59 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEE
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcc
Confidence 3578999999999999999999876543
No 379
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.86 E-value=1.9e+02 Score=31.38 Aligned_cols=68 Identities=22% Similarity=0.118 Sum_probs=46.2
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCC
Q 003018 735 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814 (856)
Q Consensus 735 ~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 814 (856)
..+.+++-+||.+.+. ..+|+|++|=.-| -+=-++.+.++ ...| +..++..
T Consensus 197 IeVEv~tleea~ea~~--~gaDiI~LDn~s~-e~l~~av~~~~-------------------------~~~~-leaSGGI 247 (281)
T PRK06106 197 IEVEVDTLDQLEEALE--LGVDAVLLDNMTP-DTLREAVAIVA-------------------------GRAI-TEASGRI 247 (281)
T ss_pred EEEEeCCHHHHHHHHH--cCCCEEEeCCCCH-HHHHHHHHHhC-------------------------CCce-EEEECCC
Confidence 3457889999999884 4689999995433 11122222221 1233 7889999
Q ss_pred CHHhHHHHHHcCCCeEE
Q 003018 815 IQATYEECLRSGMDGYV 831 (856)
Q Consensus 815 ~~~~~~~~~~aG~d~yl 831 (856)
..+...+..+.|+|-..
T Consensus 248 ~~~ni~~yA~tGVD~Is 264 (281)
T PRK06106 248 TPETAPAIAASGVDLIS 264 (281)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998543
No 380
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=27.53 E-value=1.7e+02 Score=30.10 Aligned_cols=42 Identities=17% Similarity=0.361 Sum_probs=28.8
Q ss_pred CCcEEEEecC----------CCHHhHHHHHHcCCCeEEe-------CC--CCHHHHHHHHhh
Q 003018 804 HVPILAMTAD----------VIQATYEECLRSGMDGYVS-------KP--FEAEQLYREVSR 846 (856)
Q Consensus 804 ~~pIIalTa~----------~~~~~~~~~~~aG~d~yl~-------KP--~~~~~L~~~l~~ 846 (856)
.+|||.++.. ...+...+|.++|+| ++. +| -+..++.+.+++
T Consensus 56 ~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad-~I~~d~~~~~~p~~~~~~~~i~~~~~ 116 (221)
T PRK01130 56 DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGAD-IIALDATLRPRPDGETLAELVKRIKE 116 (221)
T ss_pred CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCC-EEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 5788766541 134568899999999 554 45 566777777766
No 381
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=27.33 E-value=5.7e+02 Score=26.89 Aligned_cols=83 Identities=22% Similarity=0.203 Sum_probs=59.4
Q ss_pred HHHHHHhhcCCEEEEE--cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHH-----HHHHHHhhcccccccccccccchhh
Q 003018 724 VAAAGLKRYGAAVVCV--ERGKKATELLMPPHQFDACFMDIQMPEMDGFE-----ATKIIREMEHNFNNRIRRGEVSIEA 796 (856)
Q Consensus 724 ~l~~~L~~~g~~v~~a--~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e-----~~~~IR~~~~~~~~~~~~g~~~~~~ 796 (856)
-..+.|-+.||.|..- .|.--|-.+. .-. -..+|=+--|..+|.- .++.|++
T Consensus 121 ~Aae~Lv~eGF~VlPY~~dD~v~arrLe-e~G--caavMPl~aPIGSg~G~~n~~~l~iiie------------------ 179 (262)
T COG2022 121 KAAEQLVKEGFVVLPYTTDDPVLARRLE-EAG--CAAVMPLGAPIGSGLGLQNPYNLEIIIE------------------ 179 (262)
T ss_pred HHHHHHHhCCCEEeeccCCCHHHHHHHH-hcC--ceEeccccccccCCcCcCCHHHHHHHHH------------------
Confidence 3566777889998753 4444444433 222 4678888888877743 4555654
Q ss_pred hccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 797 YENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 797 ~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
...+|||+=.+-..+++...+++.|+|+.+.
T Consensus 180 -----~a~VPviVDAGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 180 -----EADVPVIVDAGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred -----hCCCCEEEeCCCCChhHHHHHHhcccceeeh
Confidence 2379999988888999999999999999975
No 382
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=27.16 E-value=74 Score=32.11 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=35.5
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 003018 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760 (856)
Q Consensus 712 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~Dlilm 760 (856)
|||||...-.-.-+..+|++.|++|..+.+..--++.+. ...||.|++
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~iil 49 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIE-QLAPSHLVI 49 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-hcCCCeEEE
Confidence 899999988888899999999999999887642223332 235777665
No 383
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=27.11 E-value=2.1e+02 Score=31.21 Aligned_cols=68 Identities=21% Similarity=0.159 Sum_probs=47.1
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCC
Q 003018 735 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814 (856)
Q Consensus 735 ~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 814 (856)
..+.+++-+||.+.+. ..+|+|++|=.-| |-++++-++- ..+ .+|..++..
T Consensus 211 IeVEv~sleea~ea~~--~gaDiI~LDn~s~-----e~~~~av~~~---------------------~~~-~~ieaSGGI 261 (296)
T PRK09016 211 VEVEVENLDELDQALK--AGADIIMLDNFTT-----EQMREAVKRT---------------------NGR-ALLEVSGNV 261 (296)
T ss_pred EEEEeCCHHHHHHHHH--cCCCEEEeCCCCh-----HHHHHHHHhh---------------------cCC-eEEEEECCC
Confidence 4567889999999884 4589999996444 2233222211 012 367789999
Q ss_pred CHHhHHHHHHcCCCeEE
Q 003018 815 IQATYEECLRSGMDGYV 831 (856)
Q Consensus 815 ~~~~~~~~~~aG~d~yl 831 (856)
..+...+.-+.|+|-..
T Consensus 262 ~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 262 TLETLREFAETGVDFIS 278 (296)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998553
No 384
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=26.64 E-value=1.5e+02 Score=31.78 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCC------HHhHHHHHHcCCCeEEeC--CCCHHH-
Q 003018 769 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI------QATYEECLRSGMDGYVSK--PFEAEQ- 839 (856)
Q Consensus 769 G~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~------~~~~~~~~~aG~d~yl~K--P~~~~~- 839 (856)
-+|+.+++|+. +..+||++||=... +....+|.++|+|+.|.- |++..+
T Consensus 81 ~lel~~~~r~~----------------------~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~ 138 (265)
T COG0159 81 TLELVEEIRAK----------------------GVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDE 138 (265)
T ss_pred HHHHHHHHHhc----------------------CCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHH
Confidence 37778888863 34689999986443 455778999999999987 443333
Q ss_pred HHHHHhh
Q 003018 840 LYREVSR 846 (856)
Q Consensus 840 L~~~l~~ 846 (856)
+....++
T Consensus 139 ~~~~~~~ 145 (265)
T COG0159 139 LLKAAEK 145 (265)
T ss_pred HHHHHHH
Confidence 4444443
No 385
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.53 E-value=2e+02 Score=31.33 Aligned_cols=66 Identities=18% Similarity=0.166 Sum_probs=46.7
Q ss_pred EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCC
Q 003018 736 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815 (856)
Q Consensus 736 v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~ 815 (856)
.+.+++-++|.+.+. ..+|+|++|= |+..+=-++.+.++. + .++-.++...
T Consensus 209 eVEvetleea~eA~~--aGaDiImLDn-mspe~l~~av~~~~~-------------------------~-~~lEaSGGIt 259 (294)
T PRK06978 209 QIEVETLAQLETALA--HGAQSVLLDN-FTLDMMREAVRVTAG-------------------------R-AVLEVSGGVN 259 (294)
T ss_pred EEEcCCHHHHHHHHH--cCCCEEEECC-CCHHHHHHHHHhhcC-------------------------C-eEEEEECCCC
Confidence 456789999999884 4689999995 333222333333321 1 4688899999
Q ss_pred HHhHHHHHHcCCCeE
Q 003018 816 QATYEECLRSGMDGY 830 (856)
Q Consensus 816 ~~~~~~~~~aG~d~y 830 (856)
.+...+..+.|+|-.
T Consensus 260 ~~ni~~yA~tGVD~I 274 (294)
T PRK06978 260 FDTVRAFAETGVDRI 274 (294)
T ss_pred HHHHHHHHhcCCCEE
Confidence 999999999999844
No 386
>PRK11677 hypothetical protein; Provisional
Probab=26.41 E-value=5.8e+02 Score=24.41 Aligned_cols=29 Identities=3% Similarity=0.051 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003018 212 ISTSIGILVIASLVGHIFQATVNRIAKVE 240 (856)
Q Consensus 212 ~~~~~~~l~i~~l~~~~~~~~~~r~~~~~ 240 (856)
+..++..+++..+++++.........+++
T Consensus 7 ~i~livG~iiG~~~~R~~~~~~~~q~~le 35 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFGNRKLRQQQALQ 35 (134)
T ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHH
Confidence 33344445556666676655544444443
No 387
>PLN02334 ribulose-phosphate 3-epimerase
Probab=26.12 E-value=5.3e+02 Score=26.71 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=47.1
Q ss_pred HHHhhcCCEEEEEcC---HHHHHHHhCCCCCccEE-EEeCCCCCC-------CHHHHHHHHHhhcccccccccccccchh
Q 003018 727 AGLKRYGAAVVCVER---GKKATELLMPPHQFDAC-FMDIQMPEM-------DGFEATKIIREMEHNFNNRIRRGEVSIE 795 (856)
Q Consensus 727 ~~L~~~g~~v~~a~~---g~eA~~~l~~~~~~Dli-lmDi~MP~m-------dG~e~~~~IR~~~~~~~~~~~~g~~~~~ 795 (856)
..++..|..+-.+.+ ..+.++.+......|.| +|.+. |.. .|++-++++|+.-
T Consensus 109 ~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~-pg~~~~~~~~~~~~~i~~~~~~~--------------- 172 (229)
T PLN02334 109 QQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVE-PGFGGQSFIPSMMDKVRALRKKY--------------- 172 (229)
T ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEe-cCCCccccCHHHHHHHHHHHHhC---------------
Confidence 344456766555443 35555544322115655 66654 433 3445555665421
Q ss_pred hhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 796 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 796 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
...| |.+.+....+...++.++|+|.++.
T Consensus 173 -------~~~~-I~a~GGI~~e~i~~l~~aGad~vvv 201 (229)
T PLN02334 173 -------PELD-IEVDGGVGPSTIDKAAEAGANVIVA 201 (229)
T ss_pred -------CCCc-EEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 1345 4456667889999999999997743
No 388
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=25.84 E-value=2.3e+02 Score=30.84 Aligned_cols=62 Identities=19% Similarity=0.149 Sum_probs=47.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhhc--CC---EEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHH
Q 003018 711 KILIVDDNNVNLKVAAAGLKRY--GA---AVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 773 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~--g~---~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~ 773 (856)
.|+++|-+....++-+.+|... || +|. ...||..-++.+. ...||+|+.|+.=|++++-.+-
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~-~~~~dVii~dssdpvgpa~~lf 214 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK-ENPFDVIITDSSDPVGPACALF 214 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc-cCCceEEEEecCCccchHHHHH
Confidence 5899998888888888888753 44 232 3459999888874 5789999999999999886543
No 389
>PRK13566 anthranilate synthase; Provisional
Probab=25.83 E-value=1.8e+02 Score=35.94 Aligned_cols=52 Identities=25% Similarity=0.325 Sum_probs=40.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 003018 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760 (856)
Q Consensus 707 ~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~Dlilm 760 (856)
..+++|||||-...+-..+..+|++.|+.|..+...... +.+. ...||.|++
T Consensus 524 ~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~-~~~~-~~~~DgVVL 575 (720)
T PRK13566 524 GEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAE-EMLD-RVNPDLVVL 575 (720)
T ss_pred CCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCh-hHhh-hcCCCEEEE
Confidence 457899999999888899999999999999988776432 2222 246898775
No 390
>PLN02823 spermine synthase
Probab=25.71 E-value=1.6e+02 Score=32.84 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=40.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhc-----CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCC
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRY-----GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPE 766 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~-----g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~ 766 (856)
.+|-+||=|+...++++..+... +-.+. ...||.+.++.. ...||+||+|+.-|.
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--~~~yDvIi~D~~dp~ 188 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--DEKFDVIIGDLADPV 188 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--CCCccEEEecCCCcc
Confidence 47999999999999999988542 12333 457788877643 457999999986554
No 391
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=25.50 E-value=4e+02 Score=28.89 Aligned_cols=47 Identities=13% Similarity=0.287 Sum_probs=39.0
Q ss_pred CCcEEEEecCCCHHhHHHHHHcCCCeE------EeCCCCHHHHHHHHhhhCCC
Q 003018 804 HVPILAMTADVIQATYEECLRSGMDGY------VSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 804 ~~pIIalTa~~~~~~~~~~~~aG~d~y------l~KP~~~~~L~~~l~~~~~~ 850 (856)
.+|||+.-.-.+.++..+++.+|+|.. +..|.-..++.+.+.+|+..
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~ 286 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDK 286 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHH
Confidence 589999999889999999999999754 55787778888888887754
No 392
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=25.49 E-value=5.2e+02 Score=25.95 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=51.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcC--CEEEEEcCHHHHHHHhCC-CCCccEEEEeCCCCCCCHHHHHHHHHh
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMP-PHQFDACFMDIQMPEMDGFEATKIIRE 778 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g--~~v~~a~~g~eA~~~l~~-~~~~DlilmDi~MP~mdG~e~~~~IR~ 778 (856)
.++.|+.+++..+..+..+++.+| |.|..+.+-+++++.++. ...+-|+..+.+.+. ....||+
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~-----~~~~ir~ 98 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD-----VEPEIRE 98 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc-----hHHHHHH
Confidence 479999999999999999999997 679999999999998852 234678888877755 4455554
No 393
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=25.45 E-value=2.4e+02 Score=29.49 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=41.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCE--EE-EEcCHHHHHHHhCC---CCCccEEEEeCC
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP---PHQFDACFMDIQ 763 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~--v~-~a~~g~eA~~~l~~---~~~~DlilmDi~ 763 (856)
.+|.-+|=++.....++..+++.|+. +. ...+..+.+..+.. ...||+||+|..
T Consensus 94 g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 94 GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 48999999999999999999998863 33 34566676665521 357999999975
No 394
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=25.40 E-value=8e+02 Score=29.04 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=63.0
Q ss_pred CCeEEEEcCCH---HHHHHHHHHHhh-c-CCEEEE--EcCHHHHHHHhCCCCCccEEEEeC--------------CCCCC
Q 003018 709 GRKILIVDDNN---VNLKVAAAGLKR-Y-GAAVVC--VERGKKATELLMPPHQFDACFMDI--------------QMPEM 767 (856)
Q Consensus 709 ~~~ILvVdDn~---~n~~~l~~~L~~-~-g~~v~~--a~~g~eA~~~l~~~~~~DlilmDi--------------~MP~m 767 (856)
|..++++|--. .+..-.-..+++ + +..+.. +.+.++|..+.. ...|.|..-+ -.|..
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G~~~~t~~~~~~g~~~~ 337 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCCccccCccccccCCCcc
Confidence 34577777533 222223344444 4 355543 678888888773 4689987632 12333
Q ss_pred CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 768 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
.-+..+.++.+ ...+|||+--+-....+..+|+.+||+.++.
T Consensus 338 ~~i~~~~~~~~-----------------------~~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 338 TAVYKVASIAA-----------------------QHGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred cHHHHHHHHHH-----------------------hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 34444555443 1258999999999999999999999998764
No 395
>PLN02366 spermidine synthase
Probab=25.24 E-value=3.5e+02 Score=29.75 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=40.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcC-----CEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCC
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYG-----AAVV-CVERGKKATELLMPPHQFDACFMDIQMPE 766 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g-----~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~ 766 (856)
.+|-+||=++...++.+..+...+ -.+. ...|+.+.++.. ....||+||+|..-|.
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-~~~~yDvIi~D~~dp~ 177 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-PEGTYDAIIVDSSDPV 177 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-cCCCCCEEEEcCCCCC
Confidence 479999999988889888886531 1333 356777777644 2457999999987664
No 396
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=25.21 E-value=3.6e+02 Score=28.79 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=45.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcC-----CEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCC-----HHHHHHHHHh
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYG-----AAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMD-----GFEATKIIRE 778 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g-----~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~md-----G~e~~~~IR~ 778 (856)
.++.+||-++...+.++..+...+ -.+. ...+|.+.++.. ...||+|++|.--|... .-++.+.+++
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~--~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~ 174 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT--ENTFDVIIVDSTDPVGPAETLFTKEFYELLKK 174 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC--CCCccEEEEeCCCCCCcccchhHHHHHHHHHH
Confidence 479999999999999888876532 1222 346777777654 35799999998655432 2355555554
No 397
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=25.17 E-value=4.1e+02 Score=29.66 Aligned_cols=87 Identities=28% Similarity=0.362 Sum_probs=59.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.||=|-+|.....+.++ +++..|.+..++..-.-..+-. -+|..| +++++.||+.
T Consensus 146 ~KIRI~~d~~kTvd~ak-~~e~aG~~~ltVHGRtr~~kg~-------------~~~pad-~~~i~~v~~~---------- 200 (358)
T KOG2335|consen 146 VKIRIFVDLEKTVDYAK-MLEDAGVSLLTVHGRTREQKGL-------------KTGPAD-WEAIKAVREN---------- 200 (358)
T ss_pred EEEEecCcHHHHHHHHH-HHHhCCCcEEEEecccHHhcCC-------------CCCCcC-HHHHHHHHHh----------
Confidence 36777788888777766 7778898877776544322211 222222 7889999872
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHH-cCCCeEEeC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLR-SGMDGYVSK 833 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~-aG~d~yl~K 833 (856)
.+.+|||+=-.-...++..+|++ .|+||.++-
T Consensus 201 ------------~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 201 ------------VPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred ------------CcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 22377776555555779999999 899998763
No 398
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=25.10 E-value=4.9e+02 Score=23.12 Aligned_cols=18 Identities=6% Similarity=0.309 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhHhh
Q 003018 253 AEAADVAKSQFLATVSHE 270 (856)
Q Consensus 253 ae~a~~aks~fla~iSHE 270 (856)
..+..+.|..|+.+|-..
T Consensus 63 ~rES~~Er~K~~~s~~~~ 80 (121)
T PF10669_consen 63 NRESKRERQKFIWSMNKQ 80 (121)
T ss_pred hhhhHHHHHhHHhhhhHH
Confidence 334455677788777543
No 399
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.06 E-value=4e+02 Score=30.13 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=52.5
Q ss_pred CeEEEEcCCHH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCC-CCCCCHHHHHHHHHhhcccccc
Q 003018 710 RKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ-MPEMDGFEATKIIREMEHNFNN 785 (856)
Q Consensus 710 ~~ILvVdDn~~---n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~-MP~mdG~e~~~~IR~~~~~~~~ 785 (856)
.+|.++..+.. -...++.+-+.+|..+..+.++.+....+..-..+|+||+|-- +...|.. ..+++..+..
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~DlVLIDTaG~~~~d~~-l~e~La~L~~---- 242 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGMSQRDRT-VSDQIAMLHG---- 242 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCEEEEcCCCCCcccHH-HHHHHHHHhc----
Confidence 36777765553 2345555556678888888776554443332345899999973 3333332 3344443211
Q ss_pred cccccccchhhhccCCCCCCcEEEEecCCCHHhHHHH
Q 003018 786 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 822 (856)
Q Consensus 786 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~ 822 (856)
...+.-.+++++|....++..+.
T Consensus 243 --------------~~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 243 --------------ADTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred --------------cCCCCeEEEEecCccChHHHHHH
Confidence 01112247888888777665443
No 400
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=24.98 E-value=5.5e+02 Score=23.68 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 003018 220 VIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMN 276 (856)
Q Consensus 220 ~i~~l~~~~~~~~~~-----r~~~~~~~~~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~ 276 (856)
++.+++.++++..+. |..++........+.+.+++.....-..-+...-+|...=+.
T Consensus 11 il~~~l~~~~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~ 72 (132)
T PF00430_consen 11 ILFFLLNKFLYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIE 72 (132)
T ss_dssp HHHHHHHHHTHHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443 334455555555555555555444444445555555554333
No 401
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=24.87 E-value=2e+02 Score=28.62 Aligned_cols=58 Identities=26% Similarity=0.271 Sum_probs=41.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC
Q 003018 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 766 (856)
Q Consensus 707 ~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~ 766 (856)
+.+++|||+---......+...|.+.|+.|..+..-.+.+.... ...|+||.-..-|.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l--~~aDiVIsat~~~~ 99 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHT--KQADIVIVAVGKPG 99 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHH--hhCCEEEEcCCCCc
Confidence 56789999999988888888888889988777665444333221 24677777665553
No 402
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=24.86 E-value=4e+02 Score=26.48 Aligned_cols=82 Identities=18% Similarity=0.139 Sum_probs=54.5
Q ss_pred HHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCC-------CHHHHHHHHHhhcccccccccccccchhh
Q 003018 724 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM-------DGFEATKIIREMEHNFNNRIRRGEVSIEA 796 (856)
Q Consensus 724 ~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~m-------dG~e~~~~IR~~~~~~~~~~~~g~~~~~~ 796 (856)
..+..+.....--..+.+..++.+... ...|.|+.----|-- =|++..+++++.
T Consensus 87 ~~r~~~~~~~~ig~S~h~~~e~~~a~~--~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~----------------- 147 (180)
T PF02581_consen 87 EARKLLGPDKIIGASCHSLEEAREAEE--LGADYVFLGPVFPTSSKPGAPPLGLDGLREIARA----------------- 147 (180)
T ss_dssp HHHHHHTTTSEEEEEESSHHHHHHHHH--CTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHH-----------------
T ss_pred HhhhhcccceEEEeecCcHHHHHHhhh--cCCCEEEECCccCCCCCccccccCHHHHHHHHHh-----------------
Confidence 345556554444556788888776652 457999987654432 488888888763
Q ss_pred hccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEE
Q 003018 797 YENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831 (856)
Q Consensus 797 ~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 831 (856)
.++||+|+=+- ..+...++.++|++++-
T Consensus 148 ------~~~pv~AlGGI-~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 148 ------SPIPVYALGGI-TPENIPELREAGADGVA 175 (180)
T ss_dssp ------TSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred ------CCCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 24899998664 67778889999999874
No 403
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=24.70 E-value=6.9e+02 Score=24.72 Aligned_cols=18 Identities=6% Similarity=0.157 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003018 217 GILVIASLVGHIFQATVN 234 (856)
Q Consensus 217 ~~l~i~~l~~~~~~~~~~ 234 (856)
.++++.+++.++++..+.
T Consensus 27 ~Flil~~lL~~~l~kpi~ 44 (175)
T PRK14472 27 TFVIVLLILKKIAWGPIL 44 (175)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 333344444444444433
No 404
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=24.67 E-value=2.6e+02 Score=28.25 Aligned_cols=42 Identities=29% Similarity=0.393 Sum_probs=34.8
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 003018 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760 (856)
Q Consensus 712 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~Dlilm 760 (856)
|+|||=.--|...+...|++.|+.+..+.+..+ + ..+|.|++
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~----l---~~~d~iii 42 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEE----I---LSADKLIL 42 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHH----h---ccCCEEEE
Confidence 578888888999999999999999999887543 3 24899887
No 405
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=24.32 E-value=1.2e+02 Score=32.75 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=29.4
Q ss_pred CCcEE--EEecCCCHHhHHHHHHcCCCeEEe-----CCCCHHHHHHHH
Q 003018 804 HVPIL--AMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREV 844 (856)
Q Consensus 804 ~~pII--alTa~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L~~~l 844 (856)
.+||| +.-.-..+++...++++|+|+++. |.-++.+..+.+
T Consensus 203 ~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akaf 250 (293)
T PRK04180 203 RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAI 250 (293)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHH
Confidence 58998 666666899999999999999853 333555444433
No 406
>PRK05637 anthranilate synthase component II; Provisional
Probab=24.25 E-value=1.4e+02 Score=30.86 Aligned_cols=49 Identities=8% Similarity=0.139 Sum_probs=37.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~Dlilm 760 (856)
++||++|-..-+-.-+...|++.|+.+..+.+.... +.+. ...||.|++
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~-~~l~-~~~~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPV-EEIL-AANPDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCH-HHHH-hcCCCEEEE
Confidence 479999998888888999999999999888775432 2222 235788877
No 407
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=24.23 E-value=6.2e+02 Score=29.24 Aligned_cols=67 Identities=15% Similarity=0.061 Sum_probs=37.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHh----hcCCEEEEEcCHH-------HHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHH
Q 003018 709 GRKILIVDDNNVNLKVAAAGLK----RYGAAVVCVERGK-------KATELLMPPHQFDACFMDIQMPEMDG--FEATKI 775 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~----~~g~~v~~a~~g~-------eA~~~l~~~~~~DlilmDi~MP~mdG--~e~~~~ 775 (856)
|++|++|+-++. |-.+...|+ +.|..+....++. ++++.+. ...||+||.|.- +... -+..++
T Consensus 128 G~kV~lV~~D~~-R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~-~~~~DvViIDTa--Gr~~~d~~lm~E 203 (429)
T TIGR01425 128 GFKPCLVCADTF-RAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK-KENFDIIIVDTS--GRHKQEDSLFEE 203 (429)
T ss_pred CCCEEEEcCccc-chhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH-hCCCCEEEEECC--CCCcchHHHHHH
Confidence 568988887653 333444443 3455555444322 4555553 357999999984 3322 234555
Q ss_pred HHhh
Q 003018 776 IREM 779 (856)
Q Consensus 776 IR~~ 779 (856)
+++.
T Consensus 204 l~~i 207 (429)
T TIGR01425 204 MLQV 207 (429)
T ss_pred HHHH
Confidence 5543
No 408
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=24.19 E-value=3.2e+02 Score=27.07 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=23.0
Q ss_pred cCCCCeEEEEcCCHHH---HHHHHHHHhhcCCEEE
Q 003018 706 LLLGRKILIVDDNNVN---LKVAAAGLKRYGAAVV 737 (856)
Q Consensus 706 ~~~~~~ILvVdDn~~n---~~~l~~~L~~~g~~v~ 737 (856)
...+++||||||=-.. ...+...|++.|..|.
T Consensus 105 ~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~ 139 (173)
T TIGR00336 105 LLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVA 139 (173)
T ss_pred CCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEE
Confidence 3467899999997765 4555667777776654
No 409
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=23.90 E-value=4.1e+02 Score=29.20 Aligned_cols=72 Identities=14% Similarity=0.048 Sum_probs=45.1
Q ss_pred EEEEcCHHHHHHHhC----CCCCccEEEEeCC--CCCC---CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCc
Q 003018 736 VVCVERGKKATELLM----PPHQFDACFMDIQ--MPEM---DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVP 806 (856)
Q Consensus 736 v~~a~~g~eA~~~l~----~~~~~DlilmDi~--MP~m---dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~p 806 (856)
.+.+++-+||.+.+. .....|+|++|=. -|+- +=-++-+.++.. ....
T Consensus 207 eVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~----------------------~~~~- 263 (308)
T PLN02716 207 EVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELI----------------------NGRF- 263 (308)
T ss_pred EEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhh----------------------CCCc-
Confidence 456788999988874 0135899999954 1221 211222222111 0123
Q ss_pred EEEEecCCCHHhHHHHHHcCCCeE
Q 003018 807 ILAMTADVIQATYEECLRSGMDGY 830 (856)
Q Consensus 807 IIalTa~~~~~~~~~~~~aG~d~y 830 (856)
.+-.++....+...+..+.|+|-.
T Consensus 264 ~lEaSGGIt~~ni~~yA~tGVD~I 287 (308)
T PLN02716 264 ETEASGNVTLDTVHKIGQTGVTYI 287 (308)
T ss_pred eEEEECCCCHHHHHHHHHcCCCEE
Confidence 488899999999999999999844
No 410
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=23.73 E-value=47 Score=35.07 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=20.3
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 003018 496 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533 (856)
Q Consensus 496 GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 533 (856)
.+||||+||++|++- .++--.|++.+..
T Consensus 12 nSglGl~i~~RLl~~----------~De~~~ltl~ltc 39 (341)
T KOG1478|consen 12 NSGLGLAICKRLLAE----------DDENVRLTLCLTC 39 (341)
T ss_pred CCcccHHHHHHHHhc----------cCCceeEEEEEEe
Confidence 579999999999976 3344456666644
No 411
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.50 E-value=2.2e+02 Score=29.97 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=23.6
Q ss_pred CCCcEEEEe-----cCCCHHhHHHHHHcCCCeEEeC--CCC
Q 003018 803 FHVPILAMT-----ADVIQATYEECLRSGMDGYVSK--PFE 836 (856)
Q Consensus 803 ~~~pIIalT-----a~~~~~~~~~~~~aG~d~yl~K--P~~ 836 (856)
.++|++.|| .........+|.++|+|+++.- |++
T Consensus 73 ~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e 113 (244)
T PRK13125 73 VSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLID 113 (244)
T ss_pred CCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCC
Confidence 367887664 2233445778999999999986 454
No 412
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=23.48 E-value=4.1e+02 Score=30.15 Aligned_cols=63 Identities=16% Similarity=0.077 Sum_probs=42.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHH-HHh
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI-IRE 778 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~--~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~-IR~ 778 (856)
.+|..+|=|+...+.++.-++..|..-. ...|..+.+.. ...||+|++|. |+. +.+++.. |+.
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~---~~~fD~V~lDP--~Gs-~~~~l~~al~~ 147 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE---ERKFDVVDIDP--FGS-PAPFLDSAIRS 147 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---cCCCCEEEECC--CCC-cHHHHHHHHHH
Confidence 3799999999999999998887776422 33333333321 34699999996 543 4566555 655
No 413
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=23.34 E-value=3e+02 Score=26.81 Aligned_cols=58 Identities=10% Similarity=0.163 Sum_probs=40.1
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCEEEEE-------------------cCHHHHHHHhCCCCCccEEEEeCCCCCCCHH
Q 003018 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCV-------------------ERGKKATELLMPPHQFDACFMDIQMPEMDGF 770 (856)
Q Consensus 712 ILvVdDn~~n~~~l~~~L~~~g~~v~~a-------------------~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~ 770 (856)
++.+|+.+..+++++.. +..|..+..+ .|-++-++.+..-+...++=||+.||+-+|.
T Consensus 53 ~~~~d~~~~~~~i~~~~-e~~Gi~I~~~dg~~~~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~ 129 (170)
T COG2061 53 VFEGDREDKDAKIIRLL-EEEGIIIIRFDGARLREKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGE 129 (170)
T ss_pred EEEecccHHHHHHHHHH-HhCCcEEEEecCcCcceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCC
Confidence 46667788888877766 7778665433 3667777766544445667789999988874
No 414
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=23.29 E-value=3e+02 Score=29.70 Aligned_cols=71 Identities=21% Similarity=0.104 Sum_probs=46.8
Q ss_pred EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCC
Q 003018 736 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815 (856)
Q Consensus 736 v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~ 815 (856)
-..+.+-++|.+.+. ...|.|.+|-.-|. +=-++.+.+|. ..+++|+++ ++...
T Consensus 187 gVev~t~eea~~A~~--~gaD~I~ld~~~p~-~l~~~~~~~~~----------------------~~~~i~i~A-sGGI~ 240 (272)
T cd01573 187 VVEVDSLEEALAAAE--AGADILQLDKFSPE-ELAELVPKLRS----------------------LAPPVLLAA-AGGIN 240 (272)
T ss_pred EEEcCCHHHHHHHHH--cCCCEEEECCCCHH-HHHHHHHHHhc----------------------cCCCceEEE-ECCCC
Confidence 456788888888763 46899999955442 11122333332 123577664 66778
Q ss_pred HHhHHHHHHcCCCeEEe
Q 003018 816 QATYEECLRSGMDGYVS 832 (856)
Q Consensus 816 ~~~~~~~~~aG~d~yl~ 832 (856)
.+...+..++|+|.+..
T Consensus 241 ~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 241 IENAAAYAAAGADILVT 257 (272)
T ss_pred HHHHHHHHHcCCcEEEE
Confidence 89999999999998753
No 415
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.05 E-value=4.5e+02 Score=31.31 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=34.3
Q ss_pred CeEEEEcCCHH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCC
Q 003018 710 RKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 768 (856)
Q Consensus 710 ~~ILvVdDn~~---n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~md 768 (856)
++|.+++-+.. ....+..+-+..|+.+..+.+..+..+.+..-..+|+||+|. |++.
T Consensus 381 kkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~DLVLIDT--aG~s 440 (559)
T PRK12727 381 RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLVLIDT--AGMG 440 (559)
T ss_pred CceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCCEEEecC--CCcc
Confidence 56888775541 122333333446777777777666555553334699999997 4443
No 416
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.98 E-value=3.3e+02 Score=27.64 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=35.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~Dlilm 760 (856)
.|+|+|=.--|...+...|++.|+.+....+..+ + ..||.|++
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~~~----l---~~~d~iii 43 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERLGAEAVITSDPEE----I---LAADGVIL 43 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHCCCeEEEECCHHH----h---ccCCEEEE
Confidence 3889999999999999999999999999876532 2 24899887
No 417
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.70 E-value=5.9e+02 Score=31.72 Aligned_cols=107 Identities=14% Similarity=0.140 Sum_probs=61.9
Q ss_pred CeEEEEcCCHH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHHHHhhccccc
Q 003018 710 RKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG--FEATKIIREMEHNFN 784 (856)
Q Consensus 710 ~~ILvVdDn~~---n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG--~e~~~~IR~~~~~~~ 784 (856)
++|.+|+-+.. -...++.+-+..|..+..+.+..+..+.+..-..+|+||+|- |+++- -+..+++..+..
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~VLIDT--AGRs~~d~~l~eel~~l~~--- 290 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHLVLIDT--VGMSQRDRNVSEQIAMLCG--- 290 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCEEEEeC--CCCCccCHHHHHHHHHHhc---
Confidence 47877766643 224455555667887877778777665554445689999996 44321 124555554321
Q ss_pred ccccccccchhhhccCCCCCCcEEEEecCCCHHhHH---HHHHc----CCCeEEeCCCC
Q 003018 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE---ECLRS----GMDGYVSKPFE 836 (856)
Q Consensus 785 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~---~~~~a----G~d~yl~KP~~ 836 (856)
...++-.++++++....++.. +.++. +.+++|.-=+|
T Consensus 291 ---------------~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLD 334 (767)
T PRK14723 291 ---------------VGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLD 334 (767)
T ss_pred ---------------cCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccC
Confidence 112344578888877666554 33432 57776543333
No 418
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=22.54 E-value=98 Score=31.22 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=36.5
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEe
Q 003018 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 761 (856)
Q Consensus 712 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmD 761 (856)
||+||...-.-.-+..+|++.|+.+..+.+....++.+. ...||.|++-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iils 50 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADID-ALKPQKIVIS 50 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-hcCCCEEEEc
Confidence 899999988888899999999999988877642233332 2358887764
No 419
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=22.38 E-value=2.9e+02 Score=28.22 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=59.8
Q ss_pred HHHHHHHhhcCCEEEEE--cCHHHHHHHhCCCCCccEEEEeCCCC-C----CCHHHHHHHHHhhcccccccccccccchh
Q 003018 723 KVAAAGLKRYGAAVVCV--ERGKKATELLMPPHQFDACFMDIQMP-E----MDGFEATKIIREMEHNFNNRIRRGEVSIE 795 (856)
Q Consensus 723 ~~l~~~L~~~g~~v~~a--~~g~eA~~~l~~~~~~DlilmDi~MP-~----mdG~e~~~~IR~~~~~~~~~~~~g~~~~~ 795 (856)
.-....|++.|+.+..- ..+...++.+. ...||.|=+|..+. . ......++.|...-+
T Consensus 135 ~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~-~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~-------------- 199 (240)
T cd01948 135 LATLRRLRALGVRIALDDFGTGYSSLSYLK-RLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAH-------------- 199 (240)
T ss_pred HHHHHHHHHCCCeEEEeCCCCcHhhHHHHH-hCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHH--------------
Confidence 34556678889987764 45566666664 45699999996532 1 123445555544321
Q ss_pred hhccCCCCCCcEEEEecCCCHHhHHHHHHcCCC----eEEeCCCCH
Q 003018 796 AYENVSNFHVPILAMTADVIQATYEECLRSGMD----GYVSKPFEA 837 (856)
Q Consensus 796 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d----~yl~KP~~~ 837 (856)
...+++ +.++-.+.+....+.+.|++ .|+.||.+.
T Consensus 200 ------~~~~~v-ia~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 200 ------SLGLKV-VAEGVETEEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred ------HCCCeE-EEEecCCHHHHHHHHHcCCCeeeeceeccCCCC
Confidence 123444 46777889999999999995 457788764
No 420
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.26 E-value=3.6e+02 Score=24.89 Aligned_cols=71 Identities=20% Similarity=0.335 Sum_probs=51.6
Q ss_pred CccEEEEeCCCCC---CCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeE
Q 003018 754 QFDACFMDIQMPE---MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830 (856)
Q Consensus 754 ~~DlilmDi~MP~---mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~y 830 (856)
..++|-+ +-|. .-||...+.||+... +. --|--+++...+...-..+||+|.|
T Consensus 19 ~l~lI~i--~FP~F~DGRgfS~ArlLR~r~g---------------------y~-GelRA~Gdvl~DQl~~l~R~GFdsf 74 (110)
T PF06073_consen 19 RLPLIAI--DFPKFTDGRGFSQARLLRERYG---------------------YT-GELRAVGDVLRDQLFYLRRCGFDSF 74 (110)
T ss_pred CCCEEEE--ECCCcCCchHhHHHHHHHHHcC---------------------CC-CcEEEeccchHHHHHHHHHcCCCEE
Confidence 3556654 4564 457999999995321 11 1245688999999999999999999
Q ss_pred EeCC-CCHHHHHHHHhhhC
Q 003018 831 VSKP-FEAEQLYREVSRFF 848 (856)
Q Consensus 831 l~KP-~~~~~L~~~l~~~~ 848 (856)
..+. -+.+.....+..|-
T Consensus 75 ~l~~~~~~~~~~~~l~~fs 93 (110)
T PF06073_consen 75 ELREDQDPEDALAALSDFS 93 (110)
T ss_pred EeCCCCCHHHHHHHHhhCC
Confidence 8885 78888888887764
No 421
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=22.16 E-value=6.5e+02 Score=29.66 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=58.6
Q ss_pred CCeEEEEcC----CHHHHHHHHHHHhhc-CCEEEE--EcCHHHHHHHhCCCCCccEEEEeC--------------CCCCC
Q 003018 709 GRKILIVDD----NNVNLKVAAAGLKRY-GAAVVC--VERGKKATELLMPPHQFDACFMDI--------------QMPEM 767 (856)
Q Consensus 709 ~~~ILvVdD----n~~n~~~l~~~L~~~-g~~v~~--a~~g~eA~~~l~~~~~~DlilmDi--------------~MP~m 767 (856)
|-.++++|- .......++.+=+.+ +..+.. +.+.++|..+.. ...|.|...+ -.|
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~--aGad~I~vg~g~Gs~~~t~~~~~~g~p-- 328 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLID--AGADGLRIGMGSGSICITQEVCAVGRP-- 328 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHH--cCCCEEEECCcCCcccccchhccCCCC--
Confidence 446788874 333334444444443 334433 556667766653 3578876543 223
Q ss_pred CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 768 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
.+.++..+++.-. ...+|||+=-+-....+..+|+.+||+..+.
T Consensus 329 -~~~ai~~~~~~~~--------------------~~~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 329 -QASAVYHVARYAR--------------------ERGVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred -hHHHHHHHHHHHh--------------------hcCCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 3344444443211 1258999877778899999999999997764
No 422
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=22.04 E-value=1.9e+02 Score=31.31 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=49.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcC--CE----EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCC-----HHHHHHHHHh
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYG--AA----VVCVERGKKATELLMPPHQFDACFMDIQMPEMD-----GFEATKIIRE 778 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g--~~----v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~md-----G~e~~~~IR~ 778 (856)
.+|-+||=|+...++.+..|.... .. -....||.+-++... +.||+|++|..=|..- -.++.+.+++
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~--~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~ 178 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE--EKFDVIIVDSTDPVGPAEALFTEEFYEGCRR 178 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC--CcCCEEEEcCCCCCCcccccCCHHHHHHHHH
Confidence 479999999999999999998643 32 335688888887653 4799999999888321 2355555554
No 423
>PLN02476 O-methyltransferase
Probab=21.96 E-value=2.9e+02 Score=29.90 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=40.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCE--EEE-EcCHHHHHHHhCC---CCCccEEEEeCC
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAA--VVC-VERGKKATELLMP---PHQFDACFMDIQ 763 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~--v~~-a~~g~eA~~~l~~---~~~~DlilmDi~ 763 (856)
.+|.=+|-++...+.++..+++.|+. |.. ..+..+.+..+.. ...||+||+|..
T Consensus 144 G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 144 GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 46999999999999999999999874 433 3455565654421 247999999985
No 424
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=21.94 E-value=2.4e+02 Score=25.27 Aligned_cols=54 Identities=24% Similarity=0.288 Sum_probs=38.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhCCCCCccEEEEeCCC
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMPPHQFDACFMDIQM 764 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~--~v~-~a~~g~eA~~~l~~~~~~DlilmDi~M 764 (856)
.++.-+|=|+....+++..+...+. .+. ...|..+..+.+ ....||+|++|.-.
T Consensus 24 ~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 24 ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-PDGKFDLIVTNPPY 80 (117)
T ss_dssp CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-TTT-EEEEEE--ST
T ss_pred CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-cCceeEEEEECCCC
Confidence 5899999999999999999998875 233 445565555444 45789999999743
No 425
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=21.80 E-value=1.5e+02 Score=29.23 Aligned_cols=59 Identities=24% Similarity=0.293 Sum_probs=41.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCC
Q 003018 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 767 (856)
Q Consensus 707 ~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~m 767 (856)
+.|++++||-.....-+-+..+|.+.|+.|+.+..-.+-++... ..-|+|+.-.--|.+
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~--~~ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEIT--RRADIVVSAVGKPNL 92 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHH--TTSSEEEE-SSSTT-
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccccee--eeccEEeeeeccccc
Confidence 56899999999999999999999999999998865543333222 246899988877766
No 426
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=21.71 E-value=9e+02 Score=26.20 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=39.7
Q ss_pred eE-EEEcCCHH---HHHHHHHHHhhcCCEEEEE-------cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 003018 711 KI-LIVDDNNV---NLKVAAAGLKRYGAAVVCV-------ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778 (856)
Q Consensus 711 ~I-LvVdDn~~---n~~~l~~~L~~~g~~v~~a-------~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 778 (856)
+| +|.+|++. ....+...+++.|.+|... .|-...+..++ ...+|+|++... ..+...+++++++
T Consensus 143 ~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~-~~~~d~i~~~~~--~~~~~~~~~~~~~ 218 (345)
T cd06338 143 KVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAK-AAGPDAVVVAGH--FPDAVLLVRQMKE 218 (345)
T ss_pred eEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHH-hcCCCEEEECCc--chhHHHHHHHHHH
Confidence 44 44455443 3455667788889887632 23344555554 356999998653 3466677777775
No 427
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=21.70 E-value=3.6e+02 Score=27.47 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=58.8
Q ss_pred HHHHHHhhcCCEEEEE--cCHHHHHHHhCCCCCccEEEEeCCCCC---CC--HHHHHHHHHhhcccccccccccccchhh
Q 003018 724 VAAAGLKRYGAAVVCV--ERGKKATELLMPPHQFDACFMDIQMPE---MD--GFEATKIIREMEHNFNNRIRRGEVSIEA 796 (856)
Q Consensus 724 ~l~~~L~~~g~~v~~a--~~g~eA~~~l~~~~~~DlilmDi~MP~---md--G~e~~~~IR~~~~~~~~~~~~g~~~~~~ 796 (856)
.....|++.|+.+..- ..|..-+..+. ..++|.|=+|..+-. .+ ...+++.|...-+
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~-~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~--------------- 200 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLK-RLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQ--------------- 200 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHH-hCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHH---------------
Confidence 4557778889887653 44556566664 456999999965421 11 3344555544321
Q ss_pred hccCCCCCCcEEEEecCCCHHhHHHHHHcCCC----eEEeCCCCHH
Q 003018 797 YENVSNFHVPILAMTADVIQATYEECLRSGMD----GYVSKPFEAE 838 (856)
Q Consensus 797 ~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d----~yl~KP~~~~ 838 (856)
...+.+ +.++-.+.++...+.+.|++ .|+.||...+
T Consensus 201 -----~~~~~v-ia~gVe~~~~~~~l~~~Gi~~~QG~~~~~p~~~~ 240 (241)
T smart00052 201 -----KLGLQV-VAEGVETPEQLDLLRSLGCDYGQGYLFSRPLPLD 240 (241)
T ss_pred -----HCCCeE-EEecCCCHHHHHHHHHcCCCEEeeceeccCCCCC
Confidence 113444 45777788899999999997 3577886643
No 428
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=21.68 E-value=6.3e+02 Score=26.57 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=34.3
Q ss_pred CCcEEEEecCCCHHhHHHHHHc-CCCeEEe------CCCCHHHHHHHHhh
Q 003018 804 HVPILAMTADVIQATYEECLRS-GMDGYVS------KPFEAEQLYREVSR 846 (856)
Q Consensus 804 ~~pIIalTa~~~~~~~~~~~~a-G~d~yl~------KP~~~~~L~~~l~~ 846 (856)
.+|||+--.-.+.++..++++. |+++.+. .=++.+++...+.+
T Consensus 197 ~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~ 246 (253)
T PRK02083 197 NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAE 246 (253)
T ss_pred CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHH
Confidence 5899998888888999999975 9998876 45777777766654
No 429
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=21.48 E-value=2.6e+02 Score=30.85 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=23.9
Q ss_pred CCCcEEEEecCCCHHhHHH----HHHcCC--CeEEe
Q 003018 803 FHVPILAMTADVIQATYEE----CLRSGM--DGYVS 832 (856)
Q Consensus 803 ~~~pIIalTa~~~~~~~~~----~~~aG~--d~yl~ 832 (856)
.++|-|+|||.++.+...+ |.++|+ +|||.
T Consensus 240 ~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~ 275 (325)
T TIGR01232 240 THLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLC 275 (325)
T ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEe
Confidence 4799999999998765554 667898 79985
No 430
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.35 E-value=6.7e+02 Score=28.65 Aligned_cols=108 Identities=10% Similarity=0.163 Sum_probs=59.4
Q ss_pred CCeEEEEcCCHH---HHHHHHHHHhhcCCEEEEEcCHHHHHHH---hCCCCCccEEEEeCCCCCCC--HHHHHHHHHhhc
Q 003018 709 GRKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERGKKATEL---LMPPHQFDACFMDIQMPEMD--GFEATKIIREME 780 (856)
Q Consensus 709 ~~~ILvVdDn~~---n~~~l~~~L~~~g~~v~~a~~g~eA~~~---l~~~~~~DlilmDi~MP~md--G~e~~~~IR~~~ 780 (856)
+++|.+|+-++. -...++.+-+..|+.+..+.+..+..+. +.....+|+||+|- |+.+ .-+.+..++...
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDT--AGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDT--VGRNYLAEESVSEISAYT 311 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEEC--CCCCccCHHHHHHHHHHh
Confidence 457887777653 1234445555567777777776554333 32124589999997 3332 123344444421
Q ss_pred ccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHH----HcCCCeEEeCCCC
Q 003018 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL----RSGMDGYVSKPFE 836 (856)
Q Consensus 781 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~----~aG~d~yl~KP~~ 836 (856)
. ...++..++++++.....+..+++ ..|.+++|.==+|
T Consensus 312 ~------------------~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TKLD 353 (407)
T PRK12726 312 D------------------VVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMD 353 (407)
T ss_pred h------------------ccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEccc
Confidence 1 112344466777766666665543 3567777654444
No 431
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.29 E-value=2.8e+02 Score=30.15 Aligned_cols=91 Identities=14% Similarity=0.037 Sum_probs=56.7
Q ss_pred eEEEEcCCHHHHHHHHHHHh----hcCC---EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccc
Q 003018 711 KILIVDDNNVNLKVAAAGLK----RYGA---AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 783 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~----~~g~---~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~ 783 (856)
.|||-|.+-...--+...++ +.++ ..+.+++-+||.+.+. ...|+|++|=+-| -+=-++.+.++.
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~--agaDiImLDnmsp-e~l~~av~~~~~----- 240 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAA--AGADIIMLDNMSL-EQIEQAITLIAG----- 240 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHH--cCCCEEEECCCCH-HHHHHHHHHhcC-----
Confidence 46666655433322333333 2332 3446789999999884 4589999995332 222233332221
Q ss_pred cccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeE
Q 003018 784 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830 (856)
Q Consensus 784 ~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~y 830 (856)
-.++..++....+...+..+.|+|-.
T Consensus 241 ---------------------~~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 241 ---------------------RSRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred ---------------------ceEEEEECCCCHHHHHHHHhcCCCEE
Confidence 14688899999999999999999854
No 432
>PRK04457 spermidine synthase; Provisional
Probab=21.22 E-value=4.8e+02 Score=27.80 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=45.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcC--CEEE-EEcCHHHHHHHhCCCCCccEEEEeCC----CCC-CCHHHHHHHHHh
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYG--AAVV-CVERGKKATELLMPPHQFDACFMDIQ----MPE-MDGFEATKIIRE 778 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g--~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~----MP~-mdG~e~~~~IR~ 778 (856)
+.+|.+||=++....+++..+...+ -.+. ...|+.+.+... +..||+|++|.- +|. +.--++.+.+++
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~--~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~ 165 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH--RHSTDVILVDGFDGEGIIDALCTQPFFDDCRN 165 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC--CCCCCEEEEeCCCCCCCccccCcHHHHHHHHH
Confidence 3579999999999999998876432 2333 346788777644 357999999962 221 122466666655
No 433
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=21.20 E-value=8.5e+02 Score=24.47 Aligned_cols=97 Identities=20% Similarity=0.185 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhcCCEEEEE-cCH----HHHHHHhCCCCCccEEEEeCCCCCC-------CHHHHHHHHHhhccccccccc
Q 003018 721 NLKVAAAGLKRYGAAVVCV-ERG----KKATELLMPPHQFDACFMDIQMPEM-------DGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 721 n~~~l~~~L~~~g~~v~~a-~~g----~eA~~~l~~~~~~DlilmDi~MP~m-------dG~e~~~~IR~~~~~~~~~~~ 788 (856)
+...+....+++|..+... .+. .++.... ....|+|-+. |+. .+++..+++++.-
T Consensus 90 ~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~--~~g~d~v~~~---pg~~~~~~~~~~~~~i~~l~~~~-------- 156 (206)
T TIGR03128 90 TIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELK--ELGADYIGVH---TGLDEQAKGQNPFEDLQTILKLV-------- 156 (206)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHH--HcCCCEEEEc---CCcCcccCCCCCHHHHHHHHHhc--------
Confidence 3344556677789887755 243 3444443 2357888664 332 2344555555421
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe-----CCCCHHHHHHHHh
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVS 845 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L~~~l~ 845 (856)
+ .+.|++++....+...+++++|+|.++. +.-++.+..+.++
T Consensus 157 --------------~-~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~ 203 (206)
T TIGR03128 157 --------------K-EARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIR 203 (206)
T ss_pred --------------C-CCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHH
Confidence 1 2456677888889999999999997765 4334444444443
No 434
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=21.17 E-value=58 Score=33.47 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=16.0
Q ss_pred CCCcccchHHHHHHHHHH
Q 003018 493 THGGTGIGLSISKYLVGR 510 (856)
Q Consensus 493 ~~~GtGLGLsI~k~lv~~ 510 (856)
..|++|+||..+|++.++
T Consensus 11 TGG~sGIGl~lak~f~el 28 (245)
T COG3967 11 TGGASGIGLALAKRFLEL 28 (245)
T ss_pred eCCcchhhHHHHHHHHHh
Confidence 347899999999999987
No 435
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=21.10 E-value=2.5e+02 Score=32.69 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=0.0
Q ss_pred cCHHHHHHHhCCCCCccEEEEeC-CCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHh
Q 003018 740 ERGKKATELLMPPHQFDACFMDI-QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 818 (856)
Q Consensus 740 ~~g~eA~~~l~~~~~~DlilmDi-~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~ 818 (856)
.+.+.+..++ ...+|+|.+|. +=....-.+++++||+ ..+++||++ -.-...+.
T Consensus 224 ~~~~r~~~L~--~aG~d~I~vd~a~g~~~~~~~~i~~i~~----------------------~~~~~~vi~-G~v~t~~~ 278 (450)
T TIGR01302 224 FDKERAEALV--KAGVDVIVIDSSHGHSIYVIDSIKEIKK----------------------TYPDLDIIA-GNVATAEQ 278 (450)
T ss_pred hHHHHHHHHH--HhCCCEEEEECCCCcHhHHHHHHHHHHH----------------------hCCCCCEEE-EeCCCHHH
Q ss_pred HHHHHHcCCCeE
Q 003018 819 YEECLRSGMDGY 830 (856)
Q Consensus 819 ~~~~~~aG~d~y 830 (856)
...+.++|+|..
T Consensus 279 a~~l~~aGad~i 290 (450)
T TIGR01302 279 AKALIDAGADGL 290 (450)
T ss_pred HHHHHHhCCCEE
No 436
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=21.04 E-value=2.7e+02 Score=25.36 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=32.8
Q ss_pred HHHHHhhcCCEEEEEcCH-----HHHHHHhCCC-CCccEEEE--eCCC---CCCCHHHHHHHH
Q 003018 725 AAAGLKRYGAAVVCVERG-----KKATELLMPP-HQFDACFM--DIQM---PEMDGFEATKII 776 (856)
Q Consensus 725 l~~~L~~~g~~v~~a~~g-----~eA~~~l~~~-~~~Dlilm--Di~M---P~mdG~e~~~~I 776 (856)
...+|++.|..+..+..+ .+..+++. . +.+|+|+- |-.. ..-||+.+.|.-
T Consensus 34 Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~-~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A 95 (112)
T cd00532 34 TSRVLADAGIPVRAVSKRHEDGEPTVDAAIA-EKGKFDVVINLRDPRRDRCTDEDGTALLRLA 95 (112)
T ss_pred HHHHHHHcCCceEEEEecCCCCCcHHHHHHh-CCCCEEEEEEcCCCCcccccCCChHHHHHHH
Confidence 345677788887776442 44677774 5 78999876 4333 466788654433
No 437
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=20.96 E-value=5.1e+02 Score=26.49 Aligned_cols=100 Identities=10% Similarity=0.046 Sum_probs=56.5
Q ss_pred hCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCceEEEEeccCCccccCCCCCCCC
Q 003018 584 LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 663 (856)
Q Consensus 584 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 663 (856)
.|+.+..+.+..+++..+... .++.+++|......+..........+++..+ ..++++++...............+
T Consensus 16 ~~~~v~~~~~~~~~l~~~~~~--~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p--~~~iIvlt~~~~~~~~~~~~~~~G 91 (207)
T PRK11475 16 NPYKLHTFSSQSSFQDAMSRI--SFSAVIFSLSAMRSERREGLSCLTELAIKFP--RMRRLVIADDDIEARLIGSLSPSP 91 (207)
T ss_pred CeeEEEEeCCHHHHHHHhccC--CCCEEEeeccccCCCCCCHHHHHHHHHHHCC--CCCEEEEeCCCCHHHHHHHHHHcC
Confidence 466677888998888876543 3577775432222222223345556654322 345555543221111111110125
Q ss_pred CCceeccCCchHHHHHHHHHHhcC
Q 003018 664 IPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 664 ~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
...++.||.....+..+++.++..
T Consensus 92 a~gyl~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 92 LDGVLSKASTLEILQQELFLSLNG 115 (207)
T ss_pred CeEEEecCCCHHHHHHHHHHHHCC
Confidence 667999999999999999988753
No 438
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=20.93 E-value=7.6e+02 Score=26.51 Aligned_cols=64 Identities=13% Similarity=-0.009 Sum_probs=42.9
Q ss_pred EEEEcCCHHH---HHHHHHHHhhcCCEEEEE-------cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 003018 712 ILIVDDNNVN---LKVAAAGLKRYGAAVVCV-------ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778 (856)
Q Consensus 712 ILvVdDn~~n---~~~l~~~L~~~g~~v~~a-------~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 778 (856)
.+|.+|++.- ...++..+++.|.+|+.. .|-...+..++ ...+|+|++-.. ..++..++++.++
T Consensus 141 ail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~-~~~pd~v~~~~~--~~~~~~~~~~~~~ 214 (312)
T cd06346 141 ATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAA-AGGPDALVVIGY--PETGSGILRSAYE 214 (312)
T ss_pred EEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHH-hcCCCEEEEecc--cchHHHHHHHHHH
Confidence 3455666643 345677888889887642 35556677775 467999998654 3378888888876
No 439
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=20.84 E-value=5.9e+02 Score=22.46 Aligned_cols=8 Identities=13% Similarity=0.401 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 003018 222 ASLVGHIF 229 (856)
Q Consensus 222 ~~l~~~~~ 229 (856)
++++++.+
T Consensus 15 ~~i~~y~~ 22 (87)
T PF10883_consen 15 ALILAYLW 22 (87)
T ss_pred HHHHHHHH
Confidence 33344443
No 440
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=20.81 E-value=2e+02 Score=30.16 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=20.4
Q ss_pred eEeecHHHHHHHHHHHHHHHhhcCCC
Q 003018 368 TLIGDPGRFRQIITNLMGNSIKFTEK 393 (856)
Q Consensus 368 ~v~~D~~rl~qIl~NLl~NAiKfT~~ 393 (856)
.+.|||.|..+|-. |++|+.+-.+.
T Consensus 21 ilpGdP~R~~~iA~-lld~~~~va~~ 45 (248)
T COG2820 21 ILPGDPERVEKIAK-LLDNPVLVASN 45 (248)
T ss_pred EecCCHHHHHHHHH-Hhccchhhhhc
Confidence 35699999999888 99999886643
No 441
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=20.79 E-value=3.1e+02 Score=29.62 Aligned_cols=56 Identities=23% Similarity=0.217 Sum_probs=40.4
Q ss_pred hcCCCCeEEEEcCCHHH---HHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeC
Q 003018 705 HLLLGRKILIVDDNNVN---LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 762 (856)
Q Consensus 705 ~~~~~~~ILvVdDn~~n---~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi 762 (856)
+.+.+++||||-|.+-. .+.++..++++.....-++.+.+.+.. ...+|++|+=|.
T Consensus 176 n~~~gR~VlIva~~~~~~~dLk~lk~fi~ey~pvlIgVdGaAD~l~~--~GykP~lIvGdp 234 (395)
T COG4825 176 NDLRGRHVLIVADEPSFEDDLKSLKPFIKEYQPVLIGVDGAADVLRK--AGYKPQLIVGDP 234 (395)
T ss_pred chhcccEEEEEeCCCChHhHHHHHHHHHHhhCCEEEEccchHHHHHH--cCCCcceeecCc
Confidence 34678899999988754 466777888887666666666666554 356799999773
No 442
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=20.53 E-value=8.3e+02 Score=24.11 Aligned_cols=59 Identities=20% Similarity=0.193 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 003018 218 ILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMN 276 (856)
Q Consensus 218 ~l~i~~l~~~~~~~~~~-----r~~~~~~~~~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~ 276 (856)
++++++++.++++..+. |..++........+.+.++++....-.+-++..--|.+.=++
T Consensus 26 Flil~~iL~~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~ 89 (173)
T PRK13460 26 FLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVA 89 (173)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445444433 333444444444444444433333223334444334443333
No 443
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.45 E-value=6.1e+02 Score=26.42 Aligned_cols=82 Identities=13% Similarity=0.117 Sum_probs=55.6
Q ss_pred CHHHHHHHhCCCCCcc-EEEEeCC-CC-C-CCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCH
Q 003018 741 RGKKATELLMPPHQFD-ACFMDIQ-MP-E-MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 816 (856)
Q Consensus 741 ~g~eA~~~l~~~~~~D-lilmDi~-MP-~-mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~ 816 (856)
+..+..+.+.. . +| +++.|+. +- + ..-++++++|++. ..+||++==+-.+.
T Consensus 31 dp~~~a~~~~~-~-~~~l~ivDldga~~g~~~n~~~i~~i~~~-----------------------~~~pv~~gGGIrs~ 85 (228)
T PRK04128 31 DPVEIALRFSE-Y-VDKIHVVDLDGAFEGKPKNLDVVKNIIRE-----------------------TGLKVQVGGGLRTY 85 (228)
T ss_pred CHHHHHHHHHH-h-CCEEEEEECcchhcCCcchHHHHHHHHhh-----------------------CCCCEEEcCCCCCH
Confidence 56666666643 3 55 7778886 32 2 1357888888752 35788876666778
Q ss_pred HhHHHHHHcCCCeEEe--CCCCHHHHHHHHhhh
Q 003018 817 ATYEECLRSGMDGYVS--KPFEAEQLYREVSRF 847 (856)
Q Consensus 817 ~~~~~~~~aG~d~yl~--KP~~~~~L~~~l~~~ 847 (856)
++.+++++.|++..+. .-++++-+.+..++|
T Consensus 86 edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~ 118 (228)
T PRK04128 86 ESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEF 118 (228)
T ss_pred HHHHHHHHCCCCEEEECchhcCHHHHHHHHHHc
Confidence 8999999999998775 345666666666555
No 444
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.32 E-value=3.8e+02 Score=28.47 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=38.7
Q ss_pred cEEEEeCCCCC-CC--HHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHH-HcCCCeEE
Q 003018 756 DACFMDIQMPE-MD--GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL-RSGMDGYV 831 (856)
Q Consensus 756 DlilmDi~MP~-md--G~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~-~aG~d~yl 831 (856)
.++++|+.--+ +. -+++++++++. ..+|||+--+-.+.++..+++ +.|+++.+
T Consensus 168 ~ii~~~i~~~G~~~G~d~~~i~~~~~~-----------------------~~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 168 EILLNSIDRDGTMKGYDLELLKSFRNA-----------------------LKIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred EEEEEccCCCCCcCCCCHHHHHHHHhh-----------------------CCCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 36777764221 12 26777777752 368999988888899999999 79999875
Q ss_pred e
Q 003018 832 S 832 (856)
Q Consensus 832 ~ 832 (856)
.
T Consensus 225 v 225 (258)
T PRK01033 225 A 225 (258)
T ss_pred E
Confidence 3
No 445
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=20.26 E-value=2.2e+02 Score=24.22 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHH
Q 003018 742 GKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 821 (856)
Q Consensus 742 g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~ 821 (856)
.++.++.+.....+.+-..||. +.-+ +... -...+||+++........
T Consensus 16 a~~~L~~~~~~~~~~l~~vDI~----~d~~----l~~~---------------------Y~~~IPVl~~~~~~~~~~--- 63 (81)
T PF05768_consen 16 AKEILEEVAAEFPFELEEVDID----EDPE----LFEK---------------------YGYRIPVLHIDGIRQFKE--- 63 (81)
T ss_dssp HHHHHHHCCTTSTCEEEEEETT----TTHH----HHHH---------------------SCTSTSEEEETT-GGGCT---
T ss_pred HHHHHHHHHhhcCceEEEEECC----CCHH----HHHH---------------------hcCCCCEEEEcCcccccc---
Confidence 3444554444567899999997 3222 2221 134799998876332222
Q ss_pred HHHcCCCeEEeCCCCHHHHHHHHh
Q 003018 822 CLRSGMDGYVSKPFEAEQLYREVS 845 (856)
Q Consensus 822 ~~~aG~d~yl~KP~~~~~L~~~l~ 845 (856)
.-.+.-||+.++|.+.|+
T Consensus 64 ------~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 64 ------QEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp ------SEEEESSB-HHHHHHHHH
T ss_pred ------cceeCCCCCHHHHHHHhC
Confidence 457888999999988764
No 446
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=20.09 E-value=1.2e+02 Score=34.87 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=14.2
Q ss_pred EEEEEecCCCCChhhHh
Q 003018 461 IVSVEDTGQGIPLEAQS 477 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~ 477 (856)
.+.|.|+|+||..+++-
T Consensus 143 lLhi~DtGiGMT~edLi 159 (785)
T KOG0020|consen 143 LLHITDTGIGMTREDLI 159 (785)
T ss_pred eeeEecccCCccHHHHH
Confidence 47899999999988653
No 447
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.03 E-value=4.7e+02 Score=28.26 Aligned_cols=68 Identities=13% Similarity=0.096 Sum_probs=47.4
Q ss_pred EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCC
Q 003018 736 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815 (856)
Q Consensus 736 v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~ 815 (856)
-..+++-+|+.+.+. ..+|.|.+|-. |.|-++++.++. .+++|+. .++...
T Consensus 193 ~VEv~tleea~eA~~--~gaD~I~LD~~-----~~e~l~~~v~~~---------------------~~~i~le-AsGGIt 243 (277)
T PRK05742 193 EVEVESLDELRQALA--AGADIVMLDEL-----SLDDMREAVRLT---------------------AGRAKLE-ASGGIN 243 (277)
T ss_pred EEEeCCHHHHHHHHH--cCCCEEEECCC-----CHHHHHHHHHHh---------------------CCCCcEE-EECCCC
Confidence 445788999888773 45899999843 455566655421 1256655 566778
Q ss_pred HHhHHHHHHcCCCeEEe
Q 003018 816 QATYEECLRSGMDGYVS 832 (856)
Q Consensus 816 ~~~~~~~~~aG~d~yl~ 832 (856)
.+...++.++|+|.+-+
T Consensus 244 ~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 244 ESTLRVIAETGVDYISI 260 (277)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 88999999999997643
No 448
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=20.02 E-value=4.6e+02 Score=27.20 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=42.2
Q ss_pred ccEEEEeCCCCCC-CH--HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEE
Q 003018 755 FDACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831 (856)
Q Consensus 755 ~DlilmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 831 (856)
.-+|++|+.--++ .| +++++++++. ..+|+|+-=+-...++..++.++|+++.+
T Consensus 155 ~~ii~tdI~~dGt~~G~d~eli~~i~~~-----------------------~~~pvia~GGi~s~ed~~~l~~~Ga~~vi 211 (221)
T TIGR00734 155 YGLIVLDIHSVGTMKGPNLELLTKTLEL-----------------------SEHPVMLGGGISGVEDLELLKEMGVSAVL 211 (221)
T ss_pred CEEEEEECCccccCCCCCHHHHHHHHhh-----------------------CCCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 3689999975432 33 6788888762 35899988878888899999999999987
Q ss_pred e
Q 003018 832 S 832 (856)
Q Consensus 832 ~ 832 (856)
.
T Consensus 212 v 212 (221)
T TIGR00734 212 V 212 (221)
T ss_pred E
Confidence 5
Done!