Query 003018
Match_columns 856
No_of_seqs 733 out of 4565
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 10:17:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 100.0 4.7E-40 1.6E-44 349.4 32.2 232 251-535 11-249 (258)
2 4ew8_A Sensor protein DIVL; si 100.0 7.5E-35 2.6E-39 310.5 32.5 231 246-536 26-258 (268)
3 1gkz_A [3-methyl-2-oxobutanoat 100.0 8.7E-35 3E-39 327.9 24.1 227 255-536 116-375 (388)
4 2btz_A Pyruvate dehydrogenase 100.0 1.2E-34 4E-39 327.5 23.9 219 262-535 97-351 (394)
5 3jz3_A Sensor protein QSEC; he 100.0 1.1E-35 3.9E-40 307.1 12.6 215 260-535 2-218 (222)
6 2e0a_A Pyruvate dehydrogenase 100.0 2.7E-34 9.2E-39 324.5 24.9 219 261-535 96-351 (394)
7 2q8g_A [pyruvate dehydrogenase 100.0 9.6E-34 3.3E-38 321.4 25.8 217 263-534 108-363 (407)
8 3t4l_A Histidine kinase 4; PAS 100.0 2.1E-34 7.3E-39 306.1 17.3 196 2-205 73-270 (270)
9 1y8o_A [pyruvate dehydrogenase 100.0 4.8E-33 1.6E-37 316.7 22.6 220 260-535 118-375 (419)
10 3a0r_A Sensor protein; four he 100.0 2.4E-32 8.4E-37 302.0 26.0 214 258-535 130-346 (349)
11 3d36_A Sporulation kinase B; G 100.0 1.9E-32 6.7E-37 287.1 23.0 214 258-536 12-227 (244)
12 4fpp_A Phosphotransferase; fou 100.0 1.3E-31 4.5E-36 283.0 23.9 195 263-532 49-246 (247)
13 1b3q_A Protein (chemotaxis pro 100.0 5.6E-28 1.9E-32 270.9 19.6 202 258-535 8-249 (379)
14 3to5_A CHEY homolog; alpha(5)b 99.9 3.6E-26 1.2E-30 217.2 15.8 121 709-850 12-133 (134)
15 3ehh_A Sensor kinase (YOCF pro 99.9 2.1E-24 7E-29 222.5 20.8 190 257-534 25-216 (218)
16 1id0_A PHOQ histidine kinase; 99.9 2.2E-24 7.5E-29 209.2 19.3 145 331-535 2-146 (152)
17 1ysr_A Sensor-type histidine k 99.9 1.9E-24 6.6E-29 209.4 18.1 146 329-534 4-149 (150)
18 3sl2_A Sensor histidine kinase 99.9 7.1E-24 2.4E-28 211.6 18.1 153 332-537 2-155 (177)
19 3a0y_A Sensor protein; ATP-LID 99.9 1.7E-23 5.9E-28 202.5 20.3 146 329-535 2-149 (152)
20 3mm4_A Histidine kinase homolo 99.9 3.8E-24 1.3E-28 219.3 15.5 123 709-851 61-197 (206)
21 1bxd_A ENVZ(290-450), protein 99.9 1E-23 3.5E-28 206.9 17.2 149 327-536 4-152 (161)
22 1r62_A Nitrogen regulation pro 99.9 1.9E-23 6.5E-28 203.9 16.6 156 327-534 2-159 (160)
23 3luf_A Two-component system re 99.9 1.3E-22 4.6E-27 215.5 22.7 237 562-849 5-244 (259)
24 2ayx_A Sensor kinase protein R 99.9 4.4E-22 1.5E-26 210.8 26.6 239 557-849 7-246 (254)
25 1i58_A Chemotaxis protein CHEA 99.9 5.6E-23 1.9E-27 207.3 14.0 149 331-533 3-188 (189)
26 2lpm_A Two-component response 99.9 1.5E-23 5E-28 195.9 3.3 114 709-850 8-122 (123)
27 3gl9_A Response regulator; bet 99.9 1.1E-20 3.9E-25 176.0 17.5 119 710-849 3-121 (122)
28 3f6p_A Transcriptional regulat 99.8 5.6E-20 1.9E-24 170.6 15.8 117 710-850 3-119 (120)
29 3t6k_A Response regulator rece 99.8 4.3E-20 1.5E-24 175.5 15.2 122 709-851 4-125 (136)
30 2r25_B Osmosensing histidine p 99.8 1.1E-19 3.6E-24 172.1 17.0 121 710-851 3-128 (133)
31 3n0r_A Response regulator; sig 99.8 4E-21 1.4E-25 207.0 7.6 117 709-851 160-278 (286)
32 3h1g_A Chemotaxis protein CHEY 99.8 9.3E-20 3.2E-24 171.3 15.9 122 709-850 5-127 (129)
33 3ehg_A Sensor kinase (YOCF pro 99.8 8.1E-20 2.8E-24 172.2 14.1 125 333-534 2-126 (128)
34 3m6m_D Sensory/regulatory prot 99.8 1.7E-19 5.8E-24 173.0 15.9 124 709-851 14-137 (143)
35 3zxo_A Redox sensor histidine 99.8 2.6E-19 8.8E-24 168.5 14.8 125 331-534 3-128 (129)
36 3rqi_A Response regulator prot 99.8 1.8E-19 6.3E-24 180.7 13.1 117 709-848 7-123 (184)
37 1dbw_A Transcriptional regulat 99.8 3E-18 1E-22 160.0 17.7 119 709-850 3-121 (126)
38 3gt7_A Sensor protein; structu 99.8 2.8E-18 9.6E-23 166.6 17.0 120 709-849 7-126 (154)
39 1srr_A SPO0F, sporulation resp 99.8 2.4E-18 8.2E-23 160.0 15.6 118 710-850 4-121 (124)
40 1mb3_A Cell division response 99.8 1.7E-18 5.9E-23 160.7 14.4 121 710-851 2-122 (124)
41 3eod_A Protein HNR; response r 99.8 2.5E-18 8.4E-23 161.3 15.5 121 708-851 6-127 (130)
42 3lua_A Response regulator rece 99.8 1.7E-18 5.8E-23 164.8 13.8 123 709-851 4-128 (140)
43 3zxq_A Hypoxia sensor histidin 99.8 4.7E-18 1.6E-22 158.7 16.5 122 334-534 2-123 (124)
44 3hdv_A Response regulator; PSI 99.8 4.2E-18 1.4E-22 161.0 15.6 122 709-851 7-128 (136)
45 3i42_A Response regulator rece 99.8 1.6E-18 5.6E-23 161.8 12.6 121 710-852 4-124 (127)
46 1tmy_A CHEY protein, TMY; chem 99.8 4.2E-18 1.4E-22 157.2 15.1 116 710-848 3-119 (120)
47 3crn_A Response regulator rece 99.8 3.8E-18 1.3E-22 160.9 14.8 116 710-848 4-119 (132)
48 3kto_A Response regulator rece 99.8 1.4E-18 4.9E-23 164.7 11.8 117 710-849 7-125 (136)
49 2pl1_A Transcriptional regulat 99.8 6.4E-18 2.2E-22 156.1 15.7 116 711-849 2-117 (121)
50 3heb_A Response regulator rece 99.8 7.3E-18 2.5E-22 162.9 16.3 118 710-847 5-132 (152)
51 1jbe_A Chemotaxis protein CHEY 99.8 1.1E-17 3.6E-22 156.4 16.8 118 710-848 5-123 (128)
52 3snk_A Response regulator CHEY 99.8 1.1E-18 3.8E-23 165.1 9.8 119 709-850 14-133 (135)
53 1zgz_A Torcad operon transcrip 99.8 9.3E-18 3.2E-22 155.4 15.6 115 710-848 3-117 (122)
54 1i3c_A Response regulator RCP1 99.8 1.5E-17 5.1E-22 160.3 17.5 118 710-847 9-134 (149)
55 2a9o_A Response regulator; ess 99.8 6.2E-18 2.1E-22 155.8 13.7 116 710-849 2-117 (120)
56 1dcf_A ETR1 protein; beta-alph 99.8 1.7E-17 5.7E-22 157.0 17.0 125 708-851 6-130 (136)
57 3ilh_A Two component response 99.8 9.1E-18 3.1E-22 160.3 15.2 127 709-853 9-142 (146)
58 3hv2_A Response regulator/HD d 99.8 9E-18 3.1E-22 162.6 15.0 117 709-848 14-131 (153)
59 4dad_A Putative pilus assembly 99.8 2.1E-18 7.1E-23 165.4 10.3 121 709-851 20-142 (146)
60 1xhf_A DYE resistance, aerobic 99.7 1.1E-17 3.9E-22 155.0 14.8 115 710-848 4-118 (123)
61 1mvo_A PHOP response regulator 99.7 8.2E-18 2.8E-22 158.9 14.1 118 710-850 4-121 (136)
62 3r0j_A Possible two component 99.7 7.7E-18 2.6E-22 177.4 15.4 118 709-849 23-140 (250)
63 3h5i_A Response regulator/sens 99.7 3.8E-18 1.3E-22 162.6 11.7 117 709-848 5-122 (140)
64 3dzd_A Transcriptional regulat 99.7 2.4E-18 8.3E-23 191.7 11.6 117 710-849 1-117 (368)
65 3b2n_A Uncharacterized protein 99.7 1E-17 3.5E-22 158.1 14.2 118 710-850 4-123 (133)
66 3f6c_A Positive transcription 99.7 5.1E-18 1.7E-22 159.9 12.0 120 710-852 2-122 (134)
67 4e7p_A Response regulator; DNA 99.7 1.6E-17 5.4E-22 160.2 15.7 120 710-852 21-142 (150)
68 1p6q_A CHEY2; chemotaxis, sign 99.7 8.1E-18 2.8E-22 157.4 13.2 119 710-849 7-126 (129)
69 3hzh_A Chemotaxis response reg 99.7 1.5E-17 5.1E-22 161.9 15.3 118 709-849 36-156 (157)
70 2qzj_A Two-component response 99.7 1.2E-17 4E-22 158.6 14.1 115 710-848 5-119 (136)
71 3cfy_A Putative LUXO repressor 99.7 9.1E-18 3.1E-22 159.6 13.2 116 710-848 5-120 (137)
72 3kht_A Response regulator; PSI 99.7 2E-17 6.8E-22 158.1 15.6 119 709-848 5-126 (144)
73 3grc_A Sensor protein, kinase; 99.7 5.6E-18 1.9E-22 161.0 11.7 120 709-849 6-126 (140)
74 1k68_A Phytochrome response re 99.7 3.2E-17 1.1E-21 155.0 16.9 120 709-848 2-129 (140)
75 3c3m_A Response regulator rece 99.7 2.1E-17 7.2E-22 157.0 14.7 120 710-850 4-123 (138)
76 3jte_A Response regulator rece 99.7 2.7E-17 9.4E-22 156.8 15.5 117 710-848 4-121 (143)
77 3hdg_A Uncharacterized protein 99.7 1.5E-17 5E-22 157.5 13.4 118 709-849 7-124 (137)
78 1yio_A Response regulatory pro 99.7 1.9E-17 6.4E-22 168.9 14.5 117 709-848 4-120 (208)
79 3a10_A Response regulator; pho 99.7 1.5E-17 5.3E-22 152.4 12.4 114 710-848 2-115 (116)
80 3nhm_A Response regulator; pro 99.7 2E-17 6.9E-22 155.6 13.3 118 709-849 4-121 (133)
81 3lte_A Response regulator; str 99.7 3.7E-17 1.3E-21 153.5 15.1 121 709-851 6-126 (132)
82 3eul_A Possible nitrate/nitrit 99.7 2.6E-17 9E-22 159.0 14.2 121 708-851 14-136 (152)
83 2jba_A Phosphate regulon trans 99.7 1.1E-17 3.6E-22 156.0 11.0 120 710-850 3-122 (127)
84 2qxy_A Response regulator; reg 99.7 3.6E-17 1.2E-21 155.8 14.4 118 709-850 4-121 (142)
85 1zh2_A KDP operon transcriptio 99.7 2.5E-17 8.7E-22 151.9 13.0 115 711-849 3-117 (121)
86 3q9s_A DNA-binding response re 99.7 2.2E-17 7.5E-22 174.1 14.1 119 709-851 37-155 (249)
87 1dz3_A Stage 0 sporulation pro 99.7 2E-17 7E-22 155.1 11.9 119 710-850 3-123 (130)
88 3kcn_A Adenylate cyclase homol 99.7 4.7E-17 1.6E-21 157.1 14.7 117 709-848 4-121 (151)
89 3cnb_A DNA-binding response re 99.7 6.7E-17 2.3E-21 153.7 15.4 121 709-850 8-130 (143)
90 1k66_A Phytochrome response re 99.7 5.9E-17 2E-21 155.0 15.0 120 709-848 6-136 (149)
91 1w25_A Stalked-cell differenti 99.7 9.1E-16 3.1E-20 176.3 27.0 257 562-847 2-267 (459)
92 1a04_A Nitrate/nitrite respons 99.7 5.3E-17 1.8E-21 166.6 14.7 118 710-850 6-125 (215)
93 2rjn_A Response regulator rece 99.7 1.3E-16 4.6E-21 154.3 16.5 118 708-848 6-124 (154)
94 2zbk_B Type 2 DNA topoisomeras 99.7 2.1E-17 7.3E-22 190.1 12.6 118 368-535 23-148 (530)
95 3cu5_A Two component transcrip 99.7 4.3E-17 1.5E-21 155.7 12.3 116 710-848 3-121 (141)
96 3eqz_A Response regulator; str 99.7 4.7E-17 1.6E-21 153.2 12.4 120 709-852 3-127 (135)
97 1qkk_A DCTD, C4-dicarboxylate 99.7 1.5E-16 5.3E-21 154.1 16.0 117 709-848 3-119 (155)
98 2zay_A Response regulator rece 99.7 6E-17 2E-21 155.2 12.8 119 709-848 8-126 (147)
99 3eq2_A Probable two-component 99.7 2.5E-17 8.6E-22 185.6 11.6 116 710-848 6-122 (394)
100 1mu5_A Type II DNA topoisomera 99.7 5.1E-17 1.8E-21 185.0 13.8 117 369-535 26-149 (471)
101 3cz5_A Two-component response 99.7 1.2E-16 4E-21 154.6 14.3 121 709-852 5-127 (153)
102 2qr3_A Two-component system re 99.7 1.4E-16 4.7E-21 151.1 14.4 118 710-850 4-126 (140)
103 1s8n_A Putative antiterminator 99.7 6E-17 2E-21 165.0 12.3 115 710-848 14-129 (205)
104 3cg4_A Response regulator rece 99.7 6.1E-17 2.1E-21 154.1 11.4 119 709-848 7-125 (142)
105 3n53_A Response regulator rece 99.7 3.6E-17 1.2E-21 155.5 9.7 117 710-848 4-120 (140)
106 1kgs_A DRRD, DNA binding respo 99.7 7.1E-17 2.4E-21 166.6 12.6 117 710-849 3-119 (225)
107 2qvg_A Two component response 99.7 2.1E-16 7.3E-21 150.5 14.9 121 709-849 7-134 (143)
108 2jk1_A HUPR, hydrogenase trans 99.7 1.7E-16 5.9E-21 150.8 14.0 115 710-848 2-117 (139)
109 1w25_A Stalked-cell differenti 99.7 1.1E-16 3.6E-21 184.1 14.8 118 710-848 2-119 (459)
110 3cg0_A Response regulator rece 99.7 1.8E-16 6E-21 150.3 13.5 116 709-848 9-126 (140)
111 2gkg_A Response regulator homo 99.7 2.2E-16 7.4E-21 146.6 13.1 119 710-850 6-125 (127)
112 1ny5_A Transcriptional regulat 99.7 1.4E-16 4.7E-21 178.8 13.9 115 711-848 2-116 (387)
113 3kyj_B CHEY6 protein, putative 99.7 6.9E-17 2.4E-21 154.7 9.9 110 708-840 12-125 (145)
114 2gwr_A DNA-binding response re 99.7 2.4E-16 8.2E-21 164.6 14.5 118 710-851 6-123 (238)
115 1th8_A Anti-sigma F factor; SP 99.7 1.6E-16 5.4E-21 152.8 12.1 103 371-536 35-141 (145)
116 3klo_A Transcriptional regulat 99.7 4.5E-17 1.5E-21 168.6 7.7 120 710-851 8-130 (225)
117 1ys7_A Transcriptional regulat 99.7 1.7E-16 5.8E-21 164.7 12.0 116 710-848 8-123 (233)
118 2rdm_A Response regulator rece 99.7 5E-16 1.7E-20 145.6 14.0 119 709-851 5-124 (132)
119 2qsj_A DNA-binding response re 99.7 2.7E-16 9.1E-21 152.1 12.1 121 710-852 4-126 (154)
120 2j48_A Two-component sensor ki 99.7 4.5E-16 1.5E-20 142.1 13.0 117 710-850 2-118 (119)
121 2oqr_A Sensory transduction pr 99.7 2.8E-16 9.6E-21 162.8 12.9 117 710-850 5-121 (230)
122 3c97_A Signal transduction his 99.7 2.4E-16 8.3E-21 149.9 11.0 120 710-850 11-130 (140)
123 3t8y_A CHEB, chemotaxis respon 99.7 6.4E-16 2.2E-20 151.7 14.0 121 709-853 25-158 (164)
124 2pln_A HP1043, response regula 99.7 1.4E-15 4.8E-20 143.9 15.2 117 707-851 16-134 (137)
125 1p2f_A Response regulator; DRR 99.6 7.5E-16 2.6E-20 158.6 14.1 113 711-849 4-116 (220)
126 2qv0_A Protein MRKE; structura 99.6 1.2E-15 4.2E-20 145.3 14.1 115 709-848 9-125 (143)
127 3bre_A Probable two-component 99.6 3.8E-16 1.3E-20 173.3 11.7 117 710-847 19-136 (358)
128 2b4a_A BH3024; flavodoxin-like 99.6 7.4E-16 2.5E-20 146.0 11.7 117 708-851 14-132 (138)
129 1qo0_D AMIR; binding protein, 99.6 4.5E-16 1.5E-20 157.3 9.7 113 708-848 11-123 (196)
130 3sy8_A ROCR; TIM barrel phosph 99.6 2.6E-16 8.9E-21 177.6 8.2 118 710-849 4-127 (400)
131 1dc7_A NTRC, nitrogen regulati 99.6 3.9E-17 1.3E-21 151.1 0.7 117 710-849 4-120 (124)
132 3c3w_A Two component transcrip 99.6 1.8E-16 6.1E-21 164.3 5.6 116 711-849 3-120 (225)
133 3luf_A Two-component system re 99.6 1.2E-15 4E-20 161.9 10.0 103 710-838 5-108 (259)
134 2hqr_A Putative transcriptiona 99.6 7.3E-15 2.5E-19 151.4 15.0 114 711-851 2-116 (223)
135 1a2o_A CHEB methylesterase; ba 99.5 3.2E-14 1.1E-18 157.1 13.4 115 710-848 4-131 (349)
136 2vyc_A Biodegradative arginine 99.5 2.2E-14 7.6E-19 173.8 10.0 114 711-846 2-129 (755)
137 2q2e_B Type 2 DNA topoisomeras 99.5 7E-14 2.4E-18 163.0 10.2 115 369-535 31-155 (621)
138 3cwo_X Beta/alpha-barrel prote 98.9 3.7E-10 1.3E-14 116.8 3.6 93 734-849 6-100 (237)
139 1kij_A DNA gyrase subunit B; t 98.5 5.3E-08 1.8E-12 108.3 5.4 86 370-512 31-128 (390)
140 1b63_A MUTL; DNA mismatch repa 98.4 4.7E-07 1.6E-11 98.8 9.6 89 375-523 24-118 (333)
141 3zcc_A HAMP, osmolarity sensor 98.4 1.8E-06 6.1E-11 77.7 10.6 67 247-318 47-113 (114)
142 1h7s_A PMS1 protein homolog 2; 98.3 9.5E-07 3.3E-11 97.3 9.7 88 375-522 34-127 (365)
143 3na3_A DNA mismatch repair pro 98.3 1.7E-06 5.8E-11 94.1 10.4 89 375-523 28-122 (348)
144 3ke6_A Protein RV1364C/MT1410; 98.2 1.4E-06 4.6E-11 97.9 7.2 89 372-534 294-386 (399)
145 3to5_A CHEY homolog; alpha(5)b 98.1 1.4E-05 4.8E-10 75.2 10.2 120 560-685 11-131 (134)
146 3h4l_A DNA mismatch repair pro 98.0 9.6E-06 3.3E-10 89.0 7.6 95 375-529 25-127 (367)
147 1ixm_A SPO0B, protein (sporula 97.8 0.00017 6E-09 71.9 13.0 42 262-307 23-64 (192)
148 3zrx_A AF1503 protein, osmolar 97.7 8.1E-05 2.8E-09 66.5 8.2 60 255-319 55-114 (115)
149 3cwo_X Beta/alpha-barrel prote 97.7 1.5E-05 5.2E-10 81.7 3.1 206 588-846 8-222 (237)
150 2wer_A ATP-dependent molecular 97.6 5.2E-05 1.8E-09 77.6 6.1 58 461-522 74-141 (220)
151 3hzh_A Chemotaxis response reg 97.6 0.00024 8.1E-09 67.9 10.0 120 560-685 35-155 (157)
152 2ayx_A Sensor kinase protein R 97.5 0.00031 1.1E-08 73.3 9.6 97 706-848 8-104 (254)
153 3gl9_A Response regulator; bet 97.4 0.0015 5.2E-08 59.2 12.0 118 562-685 3-120 (122)
154 3r0j_A Possible two component 97.4 0.00094 3.2E-08 69.2 11.8 140 524-686 1-140 (250)
155 1yc1_A HSP 86, heat shock prot 97.3 0.00032 1.1E-08 73.4 6.9 58 461-522 116-183 (264)
156 1dcf_A ETR1 protein; beta-alph 97.3 0.0023 7.8E-08 59.0 12.1 121 559-686 5-128 (136)
157 1qy5_A Endoplasmin; GRP94, NEC 97.3 5.5E-05 1.9E-09 79.3 0.9 58 461-522 76-148 (269)
158 2lpm_A Two-component response 97.2 0.00048 1.7E-08 63.5 6.7 112 560-684 7-119 (123)
159 3grc_A Sensor protein, kinase; 97.2 0.0032 1.1E-07 58.3 12.3 121 561-686 6-126 (140)
160 3i42_A Response regulator rece 97.2 0.003 1E-07 57.4 11.7 119 561-686 3-121 (127)
161 3cg4_A Response regulator rece 97.1 0.0072 2.5E-07 55.9 14.2 121 560-686 6-126 (142)
162 2ior_A Chaperone protein HTPG; 97.1 0.00016 5.6E-09 74.6 2.6 58 461-522 95-164 (235)
163 3h1g_A Chemotaxis protein CHEY 97.1 0.0027 9.4E-08 58.0 10.5 123 560-687 4-127 (129)
164 1s16_A Topoisomerase IV subuni 97.0 0.00069 2.3E-08 75.1 6.9 50 461-510 64-125 (390)
165 3gt7_A Sensor protein; structu 97.0 0.0036 1.2E-07 59.3 11.1 122 560-687 6-127 (154)
166 3h5i_A Response regulator/sens 97.0 0.0095 3.2E-07 55.2 13.9 120 560-686 4-123 (140)
167 3nhm_A Response regulator; pro 97.0 0.011 3.9E-07 53.8 14.1 119 561-687 4-122 (133)
168 3t6k_A Response regulator rece 97.0 0.0039 1.3E-07 57.7 10.7 121 561-687 4-124 (136)
169 3n0r_A Response regulator; sig 97.0 0.0085 2.9E-07 63.6 14.7 116 561-687 160-277 (286)
170 1k68_A Phytochrome response re 97.0 0.0042 1.4E-07 57.0 10.8 122 561-686 2-130 (140)
171 3lua_A Response regulator rece 97.0 0.0031 1E-07 58.5 9.7 122 561-687 4-127 (140)
172 3m6m_D Sensory/regulatory prot 96.9 0.0041 1.4E-07 58.1 10.3 122 558-685 11-134 (143)
173 2gkg_A Response regulator homo 96.9 0.01 3.5E-07 53.3 12.6 118 562-686 6-124 (127)
174 3heb_A Response regulator rece 96.9 0.006 2.1E-07 57.4 11.4 121 561-685 4-133 (152)
175 3ilh_A Two component response 96.9 0.0042 1.4E-07 57.6 10.1 124 560-687 8-139 (146)
176 3f6p_A Transcriptional regulat 96.8 0.008 2.7E-07 54.1 11.2 116 562-686 3-118 (120)
177 3lte_A Response regulator; str 96.8 0.0085 2.9E-07 54.6 11.4 121 560-687 5-125 (132)
178 3hdv_A Response regulator; PSI 96.8 0.0097 3.3E-07 54.6 11.5 121 561-687 7-127 (136)
179 2qvg_A Two component response 96.8 0.011 3.7E-07 54.7 11.9 124 561-688 7-136 (143)
180 3eod_A Protein HNR; response r 96.7 0.0072 2.5E-07 55.0 10.3 120 559-686 5-125 (130)
181 1k66_A Phytochrome response re 96.7 0.0082 2.8E-07 55.8 10.9 123 560-686 5-137 (149)
182 3mm4_A Histidine kinase homolo 96.7 0.005 1.7E-07 61.8 10.0 167 507-686 15-195 (206)
183 3c3m_A Response regulator rece 96.7 0.02 6.7E-07 52.8 13.3 120 562-687 4-123 (138)
184 1jbe_A Chemotaxis protein CHEY 96.7 0.0092 3.2E-07 54.0 10.7 119 561-685 4-123 (128)
185 2zay_A Response regulator rece 96.7 0.0068 2.3E-07 56.5 10.0 121 560-686 7-127 (147)
186 3cnb_A DNA-binding response re 96.7 0.011 3.8E-07 54.5 11.3 122 560-687 7-130 (143)
187 2b4a_A BH3024; flavodoxin-like 96.7 0.025 8.5E-07 52.0 13.7 118 558-686 12-130 (138)
188 3jte_A Response regulator rece 96.7 0.0096 3.3E-07 55.1 10.9 119 562-686 4-122 (143)
189 1mb3_A Cell division response 96.7 0.013 4.5E-07 52.5 11.4 119 562-686 2-120 (124)
190 2rjn_A Response regulator rece 96.7 0.013 4.3E-07 55.3 11.6 121 559-686 5-125 (154)
191 3c97_A Signal transduction his 96.6 0.025 8.5E-07 52.2 13.3 117 561-686 10-129 (140)
192 3kht_A Response regulator; PSI 96.6 0.012 4.3E-07 54.5 11.2 121 560-686 4-127 (144)
193 2r25_B Osmosensing histidine p 96.6 0.01 3.6E-07 54.4 10.4 120 562-686 3-126 (133)
194 2jba_A Phosphate regulon trans 96.6 0.016 5.6E-07 52.2 11.6 119 562-686 3-121 (127)
195 2pln_A HP1043, response regula 96.6 0.016 5.4E-07 53.3 11.4 118 557-686 14-132 (137)
196 2rdm_A Response regulator rece 96.5 0.048 1.6E-06 49.3 14.3 120 560-688 4-124 (132)
197 3a10_A Response regulator; pho 96.5 0.041 1.4E-06 48.6 13.4 113 563-685 3-115 (116)
198 3cg0_A Response regulator rece 96.5 0.019 6.6E-07 52.7 11.5 118 560-686 8-127 (140)
199 4dad_A Putative pilus assembly 96.5 0.0084 2.9E-07 55.9 9.1 125 557-687 16-141 (146)
200 3n53_A Response regulator rece 96.5 0.032 1.1E-06 51.3 13.0 119 561-686 3-121 (140)
201 2j48_A Two-component sensor ki 96.5 0.012 4.2E-07 51.8 9.6 116 561-685 1-116 (119)
202 3hv2_A Response regulator/HD d 96.4 0.016 5.6E-07 54.4 10.8 119 560-686 13-132 (153)
203 1i3c_A Response regulator RCP1 96.4 0.022 7.6E-07 53.3 11.6 122 561-686 8-136 (149)
204 3t0h_A Heat shock protein HSP 96.4 0.0012 4E-08 67.6 2.8 59 461-523 80-148 (228)
205 3kto_A Response regulator rece 96.4 0.0083 2.9E-07 55.2 8.2 121 561-687 6-126 (136)
206 3rqi_A Response regulator prot 96.4 0.0072 2.5E-07 59.2 8.1 119 559-685 5-123 (184)
207 2qr3_A Two-component system re 96.3 0.022 7.7E-07 52.2 10.9 122 561-687 3-126 (140)
208 1dbw_A Transcriptional regulat 96.3 0.039 1.3E-06 49.7 12.3 118 561-686 3-120 (126)
209 1p6q_A CHEY2; chemotaxis, sign 96.3 0.011 3.7E-07 53.7 8.5 120 561-686 6-126 (129)
210 1tmy_A CHEY protein, TMY; chem 96.3 0.026 8.8E-07 50.3 10.8 116 561-684 2-118 (120)
211 3snk_A Response regulator CHEY 96.3 0.0077 2.6E-07 55.4 7.2 117 561-685 14-131 (135)
212 2pl1_A Transcriptional regulat 96.2 0.031 1.1E-06 49.7 11.1 116 562-685 1-116 (121)
213 4e7p_A Response regulator; DNA 96.2 0.033 1.1E-06 52.0 11.6 120 559-686 18-139 (150)
214 2qxy_A Response regulator; reg 96.2 0.027 9.4E-07 51.9 10.8 118 561-687 4-121 (142)
215 3f6c_A Positive transcription 96.2 0.027 9.1E-07 51.3 10.3 118 562-687 2-120 (134)
216 3crn_A Response regulator rece 96.1 0.043 1.5E-06 50.0 11.6 116 562-685 4-119 (132)
217 1mvo_A PHOP response regulator 96.1 0.05 1.7E-06 49.6 12.1 118 562-687 4-121 (136)
218 3hdg_A Uncharacterized protein 96.1 0.015 5.2E-07 53.3 8.3 118 561-686 7-124 (137)
219 3n75_A LDC, lysine decarboxyla 96.1 0.0032 1.1E-07 75.2 4.3 92 723-839 20-111 (715)
220 2qzj_A Two-component response 96.1 0.031 1E-06 51.5 10.3 117 561-686 4-120 (136)
221 1ys7_A Transcriptional regulat 96.1 0.11 3.7E-06 52.4 15.4 118 561-686 7-124 (233)
222 1srr_A SPO0F, sporulation resp 96.1 0.026 9E-07 50.7 9.6 117 562-686 4-120 (124)
223 1qkk_A DCTD, C4-dicarboxylate 96.1 0.03 1E-06 52.6 10.5 118 561-686 3-120 (155)
224 1zgz_A Torcad operon transcrip 96.0 0.048 1.6E-06 48.7 11.2 115 562-685 3-117 (122)
225 1xhf_A DYE resistance, aerobic 96.0 0.035 1.2E-06 49.6 10.3 115 562-685 4-118 (123)
226 1ei1_A DNA gyrase B, GYRB; ATP 95.9 0.0055 1.9E-07 67.8 5.2 50 461-510 67-128 (391)
227 3kcn_A Adenylate cyclase homol 95.8 0.043 1.5E-06 51.3 10.3 118 561-686 4-122 (151)
228 3eul_A Possible nitrate/nitrit 95.8 0.059 2E-06 50.4 11.3 122 558-687 12-135 (152)
229 1kgs_A DRRD, DNA binding respo 95.8 0.085 2.9E-06 52.9 13.0 117 562-686 3-119 (225)
230 3o0i_A HSP90AA1 protein; HSP90 95.7 0.0027 9.1E-08 65.7 1.4 58 461-522 108-175 (256)
231 2a9o_A Response regulator; ess 95.7 0.052 1.8E-06 48.1 10.0 114 563-685 3-116 (120)
232 3peh_A Endoplasmin homolog; st 95.7 0.0075 2.6E-07 63.0 4.7 58 461-522 94-162 (281)
233 3cz5_A Two-component response 95.7 0.063 2.1E-06 50.2 11.0 119 560-686 4-124 (153)
234 2gqp_A Endoplasmin; GRP94, HSP 95.7 0.0035 1.2E-07 64.6 2.2 59 461-523 80-153 (236)
235 1y4s_A Chaperone protein HTPG; 95.6 0.019 6.6E-07 66.1 8.4 47 461-507 75-133 (559)
236 3fv5_A DNA topoisomerase 4 sub 95.6 0.0085 2.9E-07 60.1 4.5 49 461-509 50-110 (201)
237 3dzd_A Transcriptional regulat 95.6 0.041 1.4E-06 60.5 10.5 117 562-686 1-117 (368)
238 1s8n_A Putative antiterminator 95.6 0.07 2.4E-06 52.8 11.3 116 562-686 14-130 (205)
239 1a2o_A CHEB methylesterase; ba 95.5 0.15 5.1E-06 55.6 14.6 188 562-779 4-206 (349)
240 3cfy_A Putative LUXO repressor 95.5 0.056 1.9E-06 49.7 9.6 116 563-686 6-121 (137)
241 1yio_A Response regulatory pro 95.4 0.088 3E-06 52.1 11.6 118 561-686 4-121 (208)
242 2cg9_A ATP-dependent molecular 95.4 0.02 6.8E-07 67.2 7.4 44 461-504 74-127 (677)
243 3eqz_A Response regulator; str 95.3 0.042 1.4E-06 49.9 8.0 120 561-688 3-126 (135)
244 2qsj_A DNA-binding response re 95.2 0.12 3.9E-06 48.4 10.9 120 561-687 3-124 (154)
245 1dz3_A Stage 0 sporulation pro 95.2 0.072 2.5E-06 48.2 9.2 118 562-686 3-122 (130)
246 3b2n_A Uncharacterized protein 95.2 0.13 4.4E-06 46.8 10.9 117 562-686 4-122 (133)
247 2gwr_A DNA-binding response re 95.1 0.097 3.3E-06 53.2 10.9 117 562-687 6-122 (238)
248 2qv0_A Protein MRKE; structura 95.1 0.18 6.1E-06 46.3 11.8 116 561-686 9-126 (143)
249 1zh2_A KDP operon transcriptio 95.0 0.096 3.3E-06 46.4 9.4 115 562-685 2-116 (121)
250 3nmq_A Heat shock protein HSP 94.9 0.0067 2.3E-07 62.1 1.4 56 461-521 87-153 (239)
251 3kyj_B CHEY6 protein, putative 94.9 0.066 2.3E-06 49.6 8.3 109 560-675 12-123 (145)
252 3q9s_A DNA-binding response re 94.9 0.095 3.2E-06 54.0 10.2 119 560-687 36-154 (249)
253 1qo0_D AMIR; binding protein, 94.7 0.043 1.5E-06 54.0 6.5 115 558-685 9-123 (196)
254 3cwv_A DNA gyrase, B subunit, 94.6 0.055 1.9E-06 59.3 7.8 29 372-400 27-58 (369)
255 3cu5_A Two component transcrip 94.6 0.26 8.8E-06 45.3 11.5 117 562-686 3-122 (141)
256 2o1u_A Endoplasmin; GRP94, HSP 94.6 0.019 6.4E-07 67.4 4.2 22 461-482 93-114 (666)
257 3q7r_A Transcriptional regulat 94.5 0.31 1E-05 41.9 10.3 105 710-850 13-118 (121)
258 2jk1_A HUPR, hydrogenase trans 94.5 0.18 6.2E-06 46.1 10.2 115 563-685 3-117 (139)
259 3t8y_A CHEB, chemotaxis respon 94.4 0.2 6.7E-06 47.6 10.5 119 561-687 25-155 (164)
260 1ny5_A Transcriptional regulat 94.4 0.16 5.5E-06 56.1 11.1 116 562-685 1-116 (387)
261 2hqr_A Putative transcriptiona 94.4 0.12 4.1E-06 51.8 9.2 114 562-687 1-115 (223)
262 1dc7_A NTRC, nitrogen regulati 94.4 0.082 2.8E-06 47.0 7.1 117 562-686 4-120 (124)
263 2oqr_A Sensory transduction pr 94.3 0.12 3.9E-06 52.1 8.9 117 562-687 5-121 (230)
264 2ioq_A Chaperone protein HTPG; 94.2 0.029 9.9E-07 65.5 4.7 57 461-521 75-143 (624)
265 1p2f_A Response regulator; DRR 93.9 0.15 5.1E-06 51.0 8.7 115 562-687 3-117 (220)
266 1a04_A Nitrate/nitrite respons 93.8 0.26 8.8E-06 49.0 10.3 118 562-687 6-125 (215)
267 3sy8_A ROCR; TIM barrel phosph 93.3 0.26 9E-06 54.5 10.2 118 562-686 4-127 (400)
268 3eq2_A Probable two-component 93.2 0.15 5.3E-06 56.2 8.1 115 561-683 5-120 (394)
269 4emv_A DNA topoisomerase IV, B 92.7 0.12 4E-06 52.6 5.6 50 461-510 73-133 (226)
270 4duh_A DNA gyrase subunit B; s 92.6 0.15 5.2E-06 51.6 6.3 49 462-510 69-129 (220)
271 3klo_A Transcriptional regulat 91.5 1 3.4E-05 45.1 11.0 120 561-686 7-128 (225)
272 3c3w_A Two component transcrip 91.3 0.22 7.5E-06 50.1 5.8 117 562-686 2-120 (225)
273 3bre_A Probable two-component 91.0 0.38 1.3E-05 52.0 7.7 116 562-683 19-135 (358)
274 3ttz_A DNA gyrase subunit B; p 90.4 0.35 1.2E-05 48.0 6.1 29 372-400 28-59 (198)
275 1zxm_A TOPO IIA ATPase, DNA to 90.2 0.47 1.6E-05 52.4 7.5 49 461-509 87-147 (400)
276 1pvg_A DNA topoisomerase II; G 90.0 0.44 1.5E-05 52.9 7.1 67 461-531 99-178 (418)
277 1wv2_A Thiazole moeity, thiazo 89.8 1.6 5.4E-05 44.7 10.3 82 725-832 127-215 (265)
278 2yxb_A Coenzyme B12-dependent 89.4 3.2 0.00011 39.5 11.9 117 709-848 18-143 (161)
279 3lnu_A Topoisomerase IV subuni 83.9 0.99 3.4E-05 49.8 5.4 49 462-510 84-144 (408)
280 3ied_A Heat shock protein; HSP 83.6 0.53 1.8E-05 48.3 2.9 56 461-520 131-197 (272)
281 2htm_A Thiazole biosynthesis p 77.7 7.8 0.00027 39.8 9.1 83 725-832 116-206 (268)
282 2vyc_A Biodegradative arginine 76.1 5.1 0.00018 48.1 8.6 111 562-676 1-121 (755)
283 3q58_A N-acetylmannosamine-6-p 73.2 15 0.00053 36.9 10.0 86 721-832 117-209 (229)
284 1ccw_A Protein (glutamate muta 72.8 15 0.0005 33.8 9.0 110 716-847 14-133 (137)
285 2i2x_B MTAC, methyltransferase 69.6 31 0.0011 35.3 11.6 112 709-849 123-243 (258)
286 4gfh_A DNA topoisomerase 2; to 67.2 8.6 0.00029 48.2 7.8 50 461-510 94-155 (1177)
287 3igs_A N-acetylmannosamine-6-p 66.1 27 0.00093 35.1 10.1 88 719-832 115-209 (232)
288 4dah_A Sporulation kinase D; a 66.0 33 0.0011 33.4 10.7 66 71-148 94-159 (217)
289 1geq_A Tryptophan synthase alp 64.8 12 0.00041 37.9 7.3 43 804-846 80-131 (248)
290 3ezx_A MMCP 1, monomethylamine 61.7 28 0.00096 34.6 9.1 102 709-834 92-204 (215)
291 1y80_A Predicted cobalamin bin 59.7 36 0.0012 33.4 9.5 102 709-834 88-198 (210)
292 3l4e_A Uncharacterized peptida 58.9 22 0.00075 35.1 7.7 65 708-779 26-100 (206)
293 3rht_A (gatase1)-like protein; 51.8 5.6 0.00019 41.0 2.0 66 710-779 5-75 (259)
294 2oo3_A Protein involved in cat 49.7 16 0.00056 37.9 5.1 71 708-778 112-184 (283)
295 3fwz_A Inner membrane protein 48.1 92 0.0031 28.0 9.7 94 709-832 30-124 (140)
296 3ffs_A Inosine-5-monophosphate 47.0 1.9E+02 0.0066 31.4 13.4 100 710-831 157-273 (400)
297 3nav_A Tryptophan synthase alp 44.7 20 0.00067 37.2 4.8 50 768-839 83-138 (271)
298 3f4w_A Putative hexulose 6 pho 43.6 96 0.0033 30.1 9.7 99 720-845 90-204 (211)
299 2xij_A Methylmalonyl-COA mutas 41.5 1.2E+02 0.0042 35.8 11.4 116 710-848 605-729 (762)
300 3lif_A Putative diguanylate cy 41.0 46 0.0016 33.1 7.0 66 71-148 94-161 (254)
301 2w6r_A Imidazole glycerol phos 40.0 61 0.0021 32.8 7.8 40 804-843 200-245 (266)
302 1geq_A Tryptophan synthase alp 39.6 91 0.0031 31.1 9.0 86 721-833 121-220 (248)
303 3vnd_A TSA, tryptophan synthas 39.0 22 0.00076 36.7 4.1 38 803-840 94-137 (267)
304 3lib_A Hypothetical sensory tr 36.7 43 0.0015 34.1 6.1 61 69-143 118-178 (290)
305 1qop_A Tryptophan synthase alp 36.6 28 0.00096 35.8 4.5 38 804-841 94-137 (268)
306 1xrs_B D-lysine 5,6-aminomutas 36.2 1.4E+02 0.0048 30.5 9.5 112 710-845 121-253 (262)
307 1yad_A Regulatory protein TENI 36.1 1.1E+02 0.0037 30.0 8.7 69 738-832 116-191 (221)
308 3o63_A Probable thiamine-phosp 36.1 1.1E+02 0.0039 30.8 8.9 85 738-846 141-237 (243)
309 1req_A Methylmalonyl-COA mutas 35.7 1.3E+02 0.0044 35.5 10.2 114 710-846 597-719 (727)
310 3tsm_A IGPS, indole-3-glycerol 35.6 3.4E+02 0.012 27.7 12.5 95 722-840 158-261 (272)
311 2gjl_A Hypothetical protein PA 35.5 2.4E+02 0.0083 29.4 11.9 82 726-832 111-200 (328)
312 3li9_A Hypothetical sensory tr 35.3 44 0.0015 34.1 5.8 61 69-143 119-179 (291)
313 3lic_A Sensor protein; PDC fol 35.3 61 0.0021 32.5 6.9 58 74-143 117-175 (274)
314 3c8c_A Methyl-accepting chemot 35.1 62 0.0021 31.3 6.8 63 71-143 88-150 (240)
315 2ekc_A AQ_1548, tryptophan syn 35.1 40 0.0014 34.5 5.4 42 804-845 94-141 (262)
316 3qja_A IGPS, indole-3-glycerol 34.9 3.8E+02 0.013 27.3 14.5 101 722-846 151-260 (272)
317 1xm3_A Thiazole biosynthesis p 34.3 33 0.0011 35.2 4.6 74 733-832 126-206 (264)
318 4fo4_A Inosine 5'-monophosphat 33.5 2.2E+02 0.0074 30.6 11.1 100 710-832 121-239 (366)
319 3ovp_A Ribulose-phosphate 3-ep 33.4 1.1E+02 0.0039 30.4 8.3 83 725-832 104-196 (228)
320 1xi3_A Thiamine phosphate pyro 32.5 1.1E+02 0.0036 29.7 7.9 67 739-831 115-188 (215)
321 1ka9_F Imidazole glycerol phos 32.4 1.1E+02 0.0038 30.5 8.2 54 770-846 185-244 (252)
322 3khj_A Inosine-5-monophosphate 32.1 1.9E+02 0.0065 31.0 10.3 89 720-831 132-234 (361)
323 2v82_A 2-dehydro-3-deoxy-6-pho 32.1 70 0.0024 31.2 6.4 79 727-832 95-175 (212)
324 2kx7_A Sensor-like histidine k 30.8 55 0.0019 28.9 4.5 51 705-762 3-53 (117)
325 3l9w_A Glutathione-regulated p 30.7 1.2E+02 0.004 33.3 8.6 97 709-835 27-124 (413)
326 3tfw_A Putative O-methyltransf 30.3 1.5E+02 0.005 29.6 8.7 68 709-778 88-158 (248)
327 1rd5_A Tryptophan synthase alp 30.2 40 0.0014 34.4 4.4 81 743-847 35-139 (262)
328 3cvo_A Methyltransferase-like 29.0 75 0.0026 31.1 5.9 26 709-734 51-76 (202)
329 3dr5_A Putative O-methyltransf 28.9 1.3E+02 0.0043 29.6 7.8 67 709-778 81-151 (221)
330 2xxa_A Signal recognition part 28.1 1E+02 0.0034 34.1 7.5 53 709-762 129-191 (433)
331 2p9j_A Hypothetical protein AQ 28.1 1.6E+02 0.0054 26.7 7.9 43 804-846 52-95 (162)
332 3kp1_A D-ornithine aminomutase 27.7 2.4E+02 0.0082 32.7 10.2 112 710-845 603-730 (763)
333 1tqx_A D-ribulose-5-phosphate 27.2 2.3E+02 0.0079 28.1 9.3 83 728-833 109-201 (227)
334 1uir_A Polyamine aminopropyltr 26.7 1.9E+02 0.0064 30.1 9.1 69 709-779 101-184 (314)
335 1x1o_A Nicotinate-nucleotide p 26.5 1.7E+02 0.006 30.2 8.5 90 712-830 169-265 (286)
336 1h5y_A HISF; histidine biosynt 26.4 1.9E+02 0.0066 28.3 8.8 43 804-846 198-246 (253)
337 1thf_D HISF protein; thermophI 26.2 1.2E+02 0.004 30.4 7.1 70 754-846 164-243 (253)
338 1eep_A Inosine 5'-monophosphat 26.1 3.5E+02 0.012 29.2 11.4 91 720-832 180-284 (404)
339 1fy2_A Aspartyl dipeptidase; s 26.1 1.6E+02 0.0054 29.2 7.9 62 710-778 32-99 (229)
340 3r75_A Anthranilate/para-amino 26.0 1.2E+02 0.0041 35.3 7.9 49 707-760 444-492 (645)
341 2w6r_A Imidazole glycerol phos 25.8 1E+02 0.0034 31.2 6.5 42 804-845 74-121 (266)
342 2pyy_A Ionotropic glutamate re 25.3 1.3E+02 0.0046 28.3 7.1 50 707-762 110-159 (228)
343 2v5j_A 2,4-dihydroxyhept-2-ENE 25.2 5.7E+02 0.019 26.2 12.8 100 725-847 30-133 (287)
344 4dzz_A Plasmid partitioning pr 24.5 1.4E+02 0.0047 28.3 7.0 52 708-763 29-84 (206)
345 1j8m_F SRP54, signal recogniti 24.4 1.2E+02 0.004 31.6 6.8 53 709-762 126-188 (297)
346 2i7c_A Spermidine synthase; tr 24.4 2.3E+02 0.0077 28.9 9.0 68 710-779 103-181 (283)
347 2vws_A YFAU, 2-keto-3-deoxy su 24.0 5.6E+02 0.019 25.8 12.9 85 741-847 27-112 (267)
348 4gud_A Imidazole glycerol phos 24.0 1.7E+02 0.0059 28.2 7.7 44 710-760 3-46 (211)
349 3c3y_A Pfomt, O-methyltransfer 23.3 1.8E+02 0.0062 28.6 7.8 68 709-778 95-169 (237)
350 3gjy_A Spermidine synthase; AP 23.2 2E+02 0.007 30.1 8.4 69 709-778 113-188 (317)
351 1tqj_A Ribulose-phosphate 3-ep 23.0 70 0.0024 31.9 4.5 44 768-835 49-94 (230)
352 2fpo_A Methylase YHHF; structu 22.9 2.8E+02 0.0095 26.4 8.9 67 710-778 78-146 (202)
353 3ajx_A 3-hexulose-6-phosphate 22.4 26 0.00087 34.2 1.1 56 760-837 29-88 (207)
354 1ka9_F Imidazole glycerol phos 22.1 2.1E+02 0.007 28.4 8.0 30 803-832 74-103 (252)
355 4avf_A Inosine-5'-monophosphat 22.1 4.7E+02 0.016 29.1 11.6 99 711-832 243-360 (490)
356 3l0g_A Nicotinate-nucleotide p 21.8 1.4E+02 0.0046 31.2 6.4 66 736-830 211-276 (300)
357 2tps_A Protein (thiamin phosph 21.8 2.7E+02 0.0091 27.0 8.7 68 739-831 123-198 (227)
358 3qz6_A HPCH/HPAI aldolase; str 21.6 5.2E+02 0.018 26.0 10.9 85 741-847 25-110 (261)
359 1ujp_A Tryptophan synthase alp 21.5 67 0.0023 33.1 4.1 43 804-846 91-142 (271)
360 3usb_A Inosine-5'-monophosphat 21.3 1.6E+02 0.0053 33.3 7.5 97 711-831 209-323 (511)
361 2lci_A Protein OR36; structura 21.2 2.2E+02 0.0074 23.9 6.2 38 712-749 80-117 (134)
362 3bo9_A Putative nitroalkan dio 21.1 2.7E+02 0.0093 29.1 9.0 81 726-831 117-203 (326)
363 2z6i_A Trans-2-enoyl-ACP reduc 21.1 2.9E+02 0.0099 28.9 9.2 80 727-831 104-189 (332)
364 2p10_A MLL9387 protein; putati 20.9 2E+02 0.0067 29.7 7.3 83 729-833 159-259 (286)
365 2yw3_A 4-hydroxy-2-oxoglutarat 20.9 2.7E+02 0.0091 27.1 8.3 91 730-849 101-199 (207)
366 3cbg_A O-methyltransferase; cy 20.8 2E+02 0.0067 28.2 7.4 68 709-778 97-170 (232)
367 2b2c_A Spermidine synthase; be 20.8 1.8E+02 0.0063 30.3 7.5 68 709-778 132-210 (314)
368 1qpo_A Quinolinate acid phosph 20.6 3.6E+02 0.012 27.8 9.4 71 735-831 197-267 (284)
369 3u81_A Catechol O-methyltransf 20.5 2E+02 0.0068 27.8 7.4 56 709-764 83-144 (221)
370 1h1y_A D-ribulose-5-phosphate 20.5 2.4E+02 0.0084 27.6 8.0 83 726-832 106-200 (228)
371 1iy9_A Spermidine synthase; ro 20.4 2.1E+02 0.007 29.1 7.7 67 710-778 100-177 (275)
372 1y0e_A Putative N-acetylmannos 20.3 1.1E+02 0.0039 29.8 5.5 29 804-832 175-203 (223)
373 3llv_A Exopolyphosphatase-rela 20.2 4.3E+02 0.015 23.0 11.3 93 709-832 29-122 (141)
374 2avd_A Catechol-O-methyltransf 20.1 3.2E+02 0.011 26.1 8.9 68 709-778 94-167 (229)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=4.7e-40 Score=349.38 Aligned_cols=232 Identities=26% Similarity=0.400 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Q 003018 251 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE---LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 327 (856)
Q Consensus 251 ~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~---l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~ 327 (856)
+++++.++.|.+|++++||||||||++|.|++++|.+.. .....+++++.+..++++|..++++++++++++.+...
T Consensus 11 ~~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~ 90 (258)
T 2c2a_A 11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQ 90 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 345566778899999999999999999999999986531 23456789999999999999999999999999999999
Q ss_pred eEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCC----eEEEEEEEe
Q 003018 328 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG----HIFVTVYLV 403 (856)
Q Consensus 328 l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G----~I~v~v~~~ 403 (856)
+...++++.+++++++..+...+..+++.+.+..+...+..+.+|+.+|.|||.|||+||+||++.| .|.+.+...
T Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~ 170 (258)
T 2c2a_A 91 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK 170 (258)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE
T ss_pred CccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecC
Confidence 9999999999999999999999999999998887655566788999999999999999999999654 355544321
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCcc
Q 003018 404 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483 (856)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 483 (856)
...+.|+|.|+|+|||++.+++||+||
T Consensus 171 -----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f 197 (258)
T 2c2a_A 171 -----------------------------------------------------DGGVLIIVEDNGIGIPDHAKDRIFEQF 197 (258)
T ss_dssp -----------------------------------------------------TTEEEEEEEECSSCCCGGGTTGGGSTT
T ss_pred -----------------------------------------------------CCeEEEEEEecCCCCCHHHHHhhcccc
Confidence 124789999999999999999999999
Q ss_pred ccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 484 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 484 ~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
|+.+.+.+...+|+||||+|||++++.|||+|+++|.+|+||+|+|++|...
T Consensus 198 ~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 198 YRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR 249 (258)
T ss_dssp CCCC---------CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC
T ss_pred ccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCCcEEEEEeeCCC
Confidence 9988766666679999999999999999999999999999999999999753
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=7.5e-35 Score=310.55 Aligned_cols=231 Identities=28% Similarity=0.442 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003018 246 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 324 (856)
Q Consensus 246 ~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~-l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g 324 (856)
+.+..++++++++.+.+|++.++|||||||++|.++++++.+.. .++..+++++.+..++++|..++++++++++++.+
T Consensus 26 l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~ 105 (268)
T 4ew8_A 26 LADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAG 105 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34445566677778899999999999999999999999997654 56778899999999999999999999999999999
Q ss_pred CceeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEe
Q 003018 325 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLV 403 (856)
Q Consensus 325 ~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~ 403 (856)
...+...++++.+++++++..+...+..+++.+.+.+++..+ .+.+|+..|.||+.|||.||+||++. |.|.|.+...
T Consensus 106 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~-~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~ 184 (268)
T 4ew8_A 106 EMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA 184 (268)
T ss_dssp CCCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC-EEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred CcceeeeeccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCc-eEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEec
Confidence 999999999999999999999999999999999999877654 58899999999999999999999976 7777776431
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCcc
Q 003018 404 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 483 (856)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 483 (856)
...+.|+|.|+|+||+++.++++|+||
T Consensus 185 -----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~ 211 (268)
T 4ew8_A 185 -----------------------------------------------------LGEVRLDVSDTGRGVPFHVQAHIFDRF 211 (268)
T ss_dssp -----------------------------------------------------SSEEEEEEEESSCCCCHHHHTTTTSTT
T ss_pred -----------------------------------------------------CCEEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 124789999999999999999999999
Q ss_pred ccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCC
Q 003018 484 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536 (856)
Q Consensus 484 ~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~ 536 (856)
++. ..+|+||||+|||++++.|||+|++.|.+|+||+|+|++|+...
T Consensus 212 ~~~------~~~g~GlGL~i~~~~~~~~gG~i~i~s~~~~Gt~~~i~lP~~~~ 258 (268)
T 4ew8_A 212 VGR------DRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQQ 258 (268)
T ss_dssp CCC------SSCCCTTHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEECCC-
T ss_pred hcC------CCCCCcccHHHHHHHHHHcCCEEEEEecCCCCEEEEEEecCCCC
Confidence 853 23699999999999999999999999999999999999998643
No 3
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=8.7e-35 Score=327.94 Aligned_cols=227 Identities=15% Similarity=0.206 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHHhHhhhhhHHHHHH-HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEee
Q 003018 255 AADVAKSQFLATVSHEIRTPMNGVL-GMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 333 (856)
Q Consensus 255 ~a~~aks~fla~iSHElRTPL~~I~-g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~ 333 (856)
+.++++++|+++++||+||||++|. |+.+++.....++..++|++.+..+..+|..+++++|++++++.+...+...++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCC
Confidence 4456788999999999999999999 666666544446678899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhhhc---CcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCC---------eEEEEEE
Q 003018 334 NLRAILDDVLSLFSGKSQDK---GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG---------HIFVTVY 401 (856)
Q Consensus 334 ~L~~ll~~v~~~~~~~a~~k---~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G---------~I~v~v~ 401 (856)
|+.+++++++..+...+..+ .+.+.+..+. +..+.+|+.+|.|||.|||+||+||+..| .|.|.+.
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~--~~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~ 273 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHV--AARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA 273 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEST--TCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccC--CCceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEE
Confidence 99999999999999999988 3334444433 34578999999999999999999999765 5777664
Q ss_pred EeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcC
Q 003018 402 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 481 (856)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~ 481 (856)
.. ...+.|+|+|+|+|||++.+++||+
T Consensus 274 ~~-----------------------------------------------------~~~v~i~V~D~G~GI~~~~~~~iF~ 300 (388)
T 1gkz_A 274 NN-----------------------------------------------------DVDLIIRISDRGGGIAHKDLDRVMD 300 (388)
T ss_dssp EC-----------------------------------------------------SSEEEEEEECCSCCCCTTTTTTTTS
T ss_pred eC-----------------------------------------------------CCEEEEEEEEeCCCcCHHHHHHhcC
Confidence 21 1257899999999999999999999
Q ss_pred ccccCCCCC--------------------CCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCC
Q 003018 482 PFMQVGPSI--------------------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536 (856)
Q Consensus 482 pF~q~d~s~--------------------~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~ 536 (856)
|||+.+.+. ++..+|+||||+|||.+++.|||+|++.|.+|.||+|+|++|....
T Consensus 301 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~~ 375 (388)
T 1gkz_A 301 YHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDG 375 (388)
T ss_dssp TTCCCC-------------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECSSS
T ss_pred cccccCCCcccccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCCCcEEEEEEecCCCC
Confidence 999987643 2334799999999999999999999999999999999999997543
No 4
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=100.00 E-value=1.2e-34 Score=327.51 Aligned_cols=219 Identities=18% Similarity=0.236 Sum_probs=175.4
Q ss_pred HHHHHhHhhhhh-----HHHHHHHHHHHHhCCCCCHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHhc-CCceeE
Q 003018 262 QFLATVSHEIRT-----PMNGVLGMLDMLMDTELDVTQ----QDYVR--TAQASGKALVSLINEVLDQAKVES-GKLELE 329 (856)
Q Consensus 262 ~fla~iSHElRT-----PL~~I~g~~~lL~~~~l~~~q----~~~l~--~i~~~~~~L~~lIndlLd~skie~-g~~~l~ 329 (856)
+|+++++||||| ||+.|.|+++++.+...+... ++|++ .+...+.+| +|+++|++++.++ +...+.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 589999999999 888889999998765444332 34777 478888898 9999999999988 677777
Q ss_pred e----EeecHHHHHHHHHHHHHHHhhh-----cCcEEEEEe--CCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCe---
Q 003018 330 A----VSFNLRAILDDVLSLFSGKSQD-----KGVELAVYI--SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH--- 395 (856)
Q Consensus 330 ~----~~~~L~~ll~~v~~~~~~~a~~-----k~i~l~~~~--~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~--- 395 (856)
. .++|+.++++++++.+...+.. +++.+.+.. .+..+..+.+|+.+|+|||.|||+||+||++.|+
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 254 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESS 254 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 7 8999999999999999999987 999988754 1233457899999999999999999999997664
Q ss_pred -----EEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCC
Q 003018 396 -----IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 470 (856)
Q Consensus 396 -----I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G 470 (856)
|.|.+... ...+.|+|+|+|+|
T Consensus 255 ~~~~~I~I~~~~~-----------------------------------------------------~~~v~i~V~D~G~G 281 (394)
T 2btz_A 255 LILPPIKVMVALG-----------------------------------------------------EEDLSIKMSDRGGG 281 (394)
T ss_dssp SCCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEECSCC
T ss_pred CCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEeCCCC
Confidence 77776421 12478999999999
Q ss_pred CChhhHhhhcCccccCCCC-----CCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 471 IPLEAQSRIFTPFMQVGPS-----ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 471 I~~e~~~~iF~pF~q~d~s-----~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
||++.+++||+|||+.+.+ .++..+|+||||+|||.+++.|||+|++.|.+|.||+|+|++|...
T Consensus 282 I~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2btz_A 282 VPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALS 351 (394)
T ss_dssp CCHHHHHHHTCTTTTCCC--------------CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESST
T ss_pred CCHHHHHHHhcccccCCCCCCcccCCCCCCCccCCHHHHHHHHHHhCCEEEEEecCCCceEEEEEecCCC
Confidence 9999999999999998775 4556789999999999999999999999999999999999999854
No 5
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=100.00 E-value=1.1e-35 Score=307.11 Aligned_cols=215 Identities=18% Similarity=0.283 Sum_probs=134.8
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHH
Q 003018 260 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 338 (856)
Q Consensus 260 ks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~l 338 (856)
+.+|++.+||||||||++|.++++++.....+ +..+++++.+..+++++..++++++++++++.+.......++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 46899999999999999999999998655433 33467788899999999999999999999999998888899999999
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEEeeccccchhhhhhhc
Q 003018 339 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEVETELS 417 (856)
Q Consensus 339 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~~~~~~~ 417 (856)
+++++..+...+..+++.+.+.+++. +..+.+|+.+|.|||.|||+||+||++.| .|.|.+. .
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~--~------------- 145 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAH-SIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLN--A------------- 145 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSC-SCEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEEC--S-------------
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCc-ceEEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEc--c-------------
Confidence 99999999999999999999998766 34688999999999999999999999665 4555431 0
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcc
Q 003018 418 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 497 (856)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~Gt 497 (856)
+ .|.|+|+|+|||++.++++|+||++.+. ...+|+
T Consensus 146 --------------------------------------~----~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~ 180 (222)
T 3jz3_A 146 --------------------------------------D----NFIVRDNGPGVTPEALARIGERFYRPPG---QTATGS 180 (222)
T ss_dssp --------------------------------------S----EEEEECSCC----------------------------
T ss_pred --------------------------------------C----eEEEEECCCCCCHHHHHHHHhhhccCCC---CCCCcc
Confidence 0 1889999999999999999999998542 344699
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 498 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 498 GLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
||||+|||++++.|||+|+++|.+|+||+|+|++|...
T Consensus 181 GlGL~i~~~i~~~~gG~i~i~s~~~~Gt~v~~~~P~~~ 218 (222)
T 3jz3_A 181 GLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWLEHH 218 (222)
T ss_dssp -CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEECCCC-
T ss_pred cccHHHHHHHHHHcCCEEEEEcCCCCcEEEEEeecCCC
Confidence 99999999999999999999999999999999998754
No 6
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=100.00 E-value=2.7e-34 Score=324.50 Aligned_cols=219 Identities=16% Similarity=0.218 Sum_probs=186.1
Q ss_pred HHHHHHhHhhhhh-----HHHHHHHHHHHHhCCC----CCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHhcCCcee
Q 003018 261 SQFLATVSHEIRT-----PMNGVLGMLDMLMDTE----LDVTQQDYVR--TAQASGKALVSLINEVLD-QAKVESGKLEL 328 (856)
Q Consensus 261 s~fla~iSHElRT-----PL~~I~g~~~lL~~~~----l~~~q~~~l~--~i~~~~~~L~~lIndlLd-~skie~g~~~l 328 (856)
.+|+++++||||| ||+.|.|+++++.... .....++|++ .+.+.+.+| +|+++|+ +++. ++...+
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~ 172 (394)
T 2e0a_A 96 LSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPS 172 (394)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTT
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCC
Confidence 3588899999999 8888899999776543 2344578888 688899999 9999999 7776 777777
Q ss_pred Ee----EeecHHHHHHHHHHHHHHHhhhc-----CcEEEEEe--CCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCe--
Q 003018 329 EA----VSFNLRAILDDVLSLFSGKSQDK-----GVELAVYI--SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-- 395 (856)
Q Consensus 329 ~~----~~~~L~~ll~~v~~~~~~~a~~k-----~i~l~~~~--~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~-- 395 (856)
.. .++|+.++++++++.+...+..+ ++.+.+.+ .+..+..+.+|+.+|+|||.|||+||+||+..|+
T Consensus 173 ~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~ 252 (394)
T 2e0a_A 173 HIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQEN 252 (394)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66 78999999999999999999998 99988754 2334457899999999999999999999997654
Q ss_pred ------EEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCC
Q 003018 396 ------IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469 (856)
Q Consensus 396 ------I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~ 469 (856)
|.|.+... ...+.|+|+|+|+
T Consensus 253 ~~~~~~I~I~~~~~-----------------------------------------------------~~~v~i~V~D~G~ 279 (394)
T 2e0a_A 253 QPSLTPIEVIVVLG-----------------------------------------------------KEDLTIKISDRGG 279 (394)
T ss_dssp SSSCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEECSC
T ss_pred cCCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEeCCC
Confidence 87776421 1257899999999
Q ss_pred CCChhhHhhhcCccccCCCC------CCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 470 GIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 470 GI~~e~~~~iF~pF~q~d~s------~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
|||++.+++||+|||+.+.+ .++..+|+||||+|||.+++.|||+|++.|.+|.||+|+|++|...
T Consensus 280 GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 280 GVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALS 351 (394)
T ss_dssp CCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred CcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcccCHHHHHHHHHHhCCEEEEEecCCccEEEEEEeCCCC
Confidence 99999999999999998875 5566789999999999999999999999999999999999999753
No 7
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=100.00 E-value=9.6e-34 Score=321.35 Aligned_cols=217 Identities=18% Similarity=0.207 Sum_probs=179.7
Q ss_pred HHHHhHhhhhh-----HHHHHHHHHHHHhCCCCC----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc----C---
Q 003018 263 FLATVSHEIRT-----PMNGVLGMLDMLMDTELD----VTQQDYVRT--AQASGKALVSLINEVLDQAKVES----G--- 324 (856)
Q Consensus 263 fla~iSHElRT-----PL~~I~g~~~lL~~~~l~----~~q~~~l~~--i~~~~~~L~~lIndlLd~skie~----g--- 324 (856)
++++++||||| ||+.|.|+++++.....+ +..+++++. +.+.+.+| +|+++|++++.+. +
T Consensus 108 ~f~~~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~~~ 185 (407)
T 2q8g_A 108 DFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSHRK 185 (407)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC----------C
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCCCcc
Confidence 44555599999 999999999987754433 233677887 77778888 9999999999976 3
Q ss_pred CceeEeEeecHHHHHHHHHHHHHHHhhhc-----CcEEEEEe--CCCCCceEeecHHHHHHHHHHHHHHHhhcCCCC---
Q 003018 325 KLELEAVSFNLRAILDDVLSLFSGKSQDK-----GVELAVYI--SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG--- 394 (856)
Q Consensus 325 ~~~l~~~~~~L~~ll~~v~~~~~~~a~~k-----~i~l~~~~--~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G--- 394 (856)
.+.+...++++.+++++++..+...+..+ ++.+.+.+ .+..+..+.+|+.+|+|||.|||+||+||+..|
T Consensus 186 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 265 (407)
T 2q8g_A 186 HIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHAN 265 (407)
T ss_dssp CBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 56677889999999999999999999988 99998876 123345789999999999999999999999765
Q ss_pred -----eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCC
Q 003018 395 -----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 469 (856)
Q Consensus 395 -----~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~ 469 (856)
.|.|.+... ...+.|+|+|+|+
T Consensus 266 ~~~~~~I~I~~~~~-----------------------------------------------------~~~v~i~V~D~G~ 292 (407)
T 2q8g_A 266 RGVYPPIQVHVTLG-----------------------------------------------------NEDLTVKMSDRGG 292 (407)
T ss_dssp TCCCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEECSC
T ss_pred CCCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEecCC
Confidence 477776421 1247899999999
Q ss_pred CCChhhHhhhcCccccCCCC------CCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 003018 470 GIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 470 GI~~e~~~~iF~pF~q~d~s------~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 534 (856)
|||++.+++||+|||+.+.+ ..+..+|+||||+|||.+++.|||+|++.|.+|.||+|+|++|..
T Consensus 293 GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~ 363 (407)
T 2q8g_A 293 GVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKAL 363 (407)
T ss_dssp CCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESS
T ss_pred CCCHHHHHHHhCccccCCCCCCccccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcCCCceEEEEEECCC
Confidence 99999999999999998875 344568999999999999999999999999999999999999974
No 8
>3t4l_A Histidine kinase 4; PAS domain, hormone receptor, endop reticulum; HET: ZEA; 1.53A {Arabidopsis thaliana} PDB: 3t4k_A* 3t4j_A* 3t4o_A* 3t4q_A* 3t4s_A* 3t4t_A*
Probab=100.00 E-value=2.1e-34 Score=306.13 Aligned_cols=196 Identities=61% Similarity=0.963 Sum_probs=177.4
Q ss_pred ccceeeeeecccchhHHHHHHhCceeeeecccccCCCCCCCCCCCCCccceeEeecCCcceEEEeccCCChhchHHHHHH
Q 003018 2 ARTRLLLIRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRA 81 (856)
Q Consensus 2 ~~~~~~~~~v~~~~r~~fe~~~~~~i~~~~~~~~~~~~~~~p~~~~~~y~pv~~~~~~~~~~~g~d~~s~~~~~~~~~~a 81 (856)
++|+.||.||.++||++||++++|.|+++.. ++|++.|++|+||+|+++.|+.++||||+|+|.||++|.+|
T Consensus 73 i~~l~~ap~V~~~~r~~fe~~~~~~I~~~~~--------~~p~~~r~~y~pi~y~ep~N~~alG~D~~S~p~rr~al~~A 144 (270)
T 3t4l_A 73 LSGVAYAEKVVNFEREMFERQHNWVIKTMDR--------GEPSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRA 144 (270)
T ss_dssp EEEEEEEECEEGGGHHHHHHHHTSCCBCTTT--------CCBCCCCSEECBEEEECGGGGGGBTBBGGGSHHHHHHHHHH
T ss_pred ceEEEEEeecCHhHHHHHHhccCceeeccCC--------cccCCCCCccceEEEeCCCCccceeeccCCCHHHHHHHHHH
Confidence 5799999999999999999999999988652 57999999999999999999999999999999999999999
Q ss_pred HhcCCceeeccccccccCcceEEEEEeeecCCCCCCCChHHHHHhhcceeeeecchHHHHHHHHHHhhccCcEEEEeecc
Q 003018 82 RASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDI 161 (856)
Q Consensus 82 ~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~d~ 161 (856)
|+||++++|+|++|+|.++.|+++++|||..+.+++.|+++|+++++|||+++|++++|++.++.++...+.+.+.+||.
T Consensus 145 r~tg~~~ls~pv~Lvq~~~~G~ll~~PVy~~~~~~~~t~~~R~~~~~G~v~~v~~~~~l~~~~l~~~~~~~~l~l~i~D~ 224 (270)
T 3t4l_A 145 RETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDI 224 (270)
T ss_dssp HHHSSCEECCCEECTTTCCEEEEEEEEEECTTCCSSCCHHHHHHTEEEEEEEEECHHHHHHHHHHTSTTGGGEEEEEEEC
T ss_pred HHhCCcEEecCeeeccCCCceEEEEEEeecCCCCCCCCHHHHHHHHhhEEEEEEEHHHHHHHHhhccccCCcEEEEEEEC
Confidence 99999999999999997899999999999988776689999999999999999999999999998776557899999999
Q ss_pred CCCCCceeccccccCCC--cceeEeeccCCCcccccceeeeecccC
Q 003018 162 TNLSHPISMYGSNVSDD--GLWLVSTLNFGDPFRKHEMRCRFKQKA 205 (856)
Q Consensus 162 ~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (856)
++.+.+..+|++..... ++.+.+.++||+|+|+|+|+|+|++++
T Consensus 225 ~~~~~~~~ly~s~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~ 270 (270)
T 3t4l_A 225 TNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKA 270 (270)
T ss_dssp SSTTSCEEEECC--CCCCTTCCEEEEECCSCTTCCEEEEEEECC--
T ss_pred CCCCCCcccccCCCCCCCCcceEEEEeecCCchhhhheeeecccCC
Confidence 98777889999877542 447899999999999999999999863
No 9
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=100.00 E-value=4.8e-33 Score=316.67 Aligned_cols=220 Identities=18% Similarity=0.243 Sum_probs=170.4
Q ss_pred HHHHHHHhHhhhhhHHH-----HHHHHHHHHhCCCCC----HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh-cCCce
Q 003018 260 KSQFLATVSHEIRTPMN-----GVLGMLDMLMDTELD----VTQQDYVRTAQAS--GKALVSLINEVLDQAKVE-SGKLE 327 (856)
Q Consensus 260 ks~fla~iSHElRTPL~-----~I~g~~~lL~~~~l~----~~q~~~l~~i~~~--~~~L~~lIndlLd~skie-~g~~~ 327 (856)
+.+|. +++|||||||+ .|.|+++++.....+ ++.+++++.+..+ +.+| +|+++|.+.+.. .+...
T Consensus 118 ~~~f~-~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~ 194 (419)
T 1y8o_A 118 LDNFL-QVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHP 194 (419)
T ss_dssp HHHHH-HHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSST
T ss_pred HHHHH-HHHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCC
Confidence 34565 56699999999 789999987653222 3346677876655 7777 999998776543 34332
Q ss_pred e----EeEeecHHHHHHHHHHHHHHHhhh-----cCcEEEEEeC--CCCCceEeecHHHHHHHHHHHHHHHhhcCCCC--
Q 003018 328 L----EAVSFNLRAILDDVLSLFSGKSQD-----KGVELAVYIS--DRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-- 394 (856)
Q Consensus 328 l----~~~~~~L~~ll~~v~~~~~~~a~~-----k~i~l~~~~~--~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-- 394 (856)
. ...++|+.++++++++.+...+.. +++.+.+... +..+..+.+|+.+|+|||.|||+||+||+.+|
T Consensus 195 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~ 274 (419)
T 1y8o_A 195 KHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYE 274 (419)
T ss_dssp TSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 347899999999999999998877 8888877442 23345789999999999999999999999765
Q ss_pred -------eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEec
Q 003018 395 -------HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 467 (856)
Q Consensus 395 -------~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 467 (856)
.|.|.+... ...+.|+|+|+
T Consensus 275 ~~~~~~~~I~I~~~~~-----------------------------------------------------~~~v~I~V~D~ 301 (419)
T 1y8o_A 275 DRKEGYPAVKTLVTLG-----------------------------------------------------KEDLSIKISDL 301 (419)
T ss_dssp TCSSCCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEEC
T ss_pred ccCCCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEEC
Confidence 477766321 12578999999
Q ss_pred CCCCChhhHhhhcCccccCCCC------CCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 468 GQGIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 468 G~GI~~e~~~~iF~pF~q~d~s------~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
|+|||++.+++||+|||+.+.+ .++..+|+||||+|||.+++.|||+|+++|.+|.||+|+|++|...
T Consensus 302 G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 302 GGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALS 375 (419)
T ss_dssp SCCCCHHHHGGGGCTTTC-------------CC--CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESCG
T ss_pred CCCCCHHHHHHHhCcccccCCCCCccccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecCCCCEEEEEEecCCC
Confidence 9999999999999999998775 4556789999999999999999999999999999999999999753
No 10
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-32 Score=302.03 Aligned_cols=214 Identities=28% Similarity=0.417 Sum_probs=181.4
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHH
Q 003018 258 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 336 (856)
Q Consensus 258 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~ 336 (856)
.++.+|++.++|||||||++|.++++++.+...+ +..+++++.+..++++|..++++++++++. ...+...++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccCCcccCHH
Confidence 3568899999999999999999999998765433 345789999999999999999999999993 345677889999
Q ss_pred HHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcC-CCCeEEEEEEEeeccccchhhhhh
Q 003018 337 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETE 415 (856)
Q Consensus 337 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT-~~G~I~v~v~~~~~~~~~~~~~~~ 415 (856)
+++++++..+...+..+++.+.+.+++.. ..+.+|+.+|.||+.||++||+||+ +.|.|.|++...+
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~----------- 274 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNED-LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMY----------- 274 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSC-CEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEET-----------
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEecCCCC-ceEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEecC-----------
Confidence 99999999999999999999998887653 4688999999999999999999999 5678877764321
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCC
Q 003018 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 495 (856)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~ 495 (856)
..+.|+|+|+|+|||++.+++||+||++.+ .+
T Consensus 275 ------------------------------------------~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~------~~ 306 (349)
T 3a0r_A 275 ------------------------------------------TKVRVSVWNSGPPIPEELKEKIFSPFFTTK------TQ 306 (349)
T ss_dssp ------------------------------------------TEEEEEEEEESCCCCGGGGTTTSSSCCCC---------
T ss_pred ------------------------------------------CEEEEEEEECCCCCChHHHhhcCCCCccCC------CC
Confidence 247899999999999999999999999743 36
Q ss_pred cccchHHHHHHHHH-HcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 496 GTGIGLSISKYLVG-RMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 496 GtGLGLsI~k~lv~-~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
|+||||+|||++++ .|||.|+++|.++ ||+|+|++|+..
T Consensus 307 g~GlGL~i~~~~v~~~~gg~i~~~~~~~-Gt~f~i~lP~~~ 346 (349)
T 3a0r_A 307 GTGLGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIPKTP 346 (349)
T ss_dssp ---CCCTHHHHHHHHTTCSBCCEEECSS-EEEEEEEEESCT
T ss_pred CccchHHHHHHHHHHhCCCEEEEEeCCC-cEEEEEEecCCC
Confidence 99999999999999 8999999999865 999999999754
No 11
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=100.00 E-value=1.9e-32 Score=287.06 Aligned_cols=214 Identities=23% Similarity=0.391 Sum_probs=183.3
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHH
Q 003018 258 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 336 (856)
Q Consensus 258 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~ 336 (856)
+++.+|++.++|||||||++|.++++++.+...+ +..+++++.+..+++++..++++++++++.+.+ ...++++.
T Consensus 12 ~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l~ 87 (244)
T 3d36_A 12 EAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNVK 87 (244)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEHH
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhHH
Confidence 4567899999999999999999999999876654 456789999999999999999999999987665 35679999
Q ss_pred HHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCC-CCeEEEEEEEeeccccchhhhhh
Q 003018 337 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETE 415 (856)
Q Consensus 337 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~ 415 (856)
.++++++..+...+..+++.+.+.+++ ..+.+|+.+|.|||.||+.||+||++ .|.|.|.+...+
T Consensus 88 ~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~----------- 153 (244)
T 3d36_A 88 LEIERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDN----------- 153 (244)
T ss_dssp HHHHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEET-----------
T ss_pred HHHHHHHHHHHHHHHhcCeEEeccCCC---ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeC-----------
Confidence 999999999999999999999887654 46889999999999999999999994 566777664321
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCC
Q 003018 416 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 495 (856)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~ 495 (856)
..+.|+|+|+|+||+++.++++|+||++.+ ..+
T Consensus 154 ------------------------------------------~~~~i~i~D~G~gi~~~~~~~if~~~~~~~-----~~~ 186 (244)
T 3d36_A 154 ------------------------------------------GRVLIRIADTGVGMTKEQLERLGEPYFTTK-----GVK 186 (244)
T ss_dssp ------------------------------------------TEEEEEEEECSSCCCHHHHHHTTSTTCCSS-----GGG
T ss_pred ------------------------------------------CEEEEEEEecCCCCCHHHHHHHhcccccCC-----CCC
Confidence 247899999999999999999999999743 246
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCC
Q 003018 496 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536 (856)
Q Consensus 496 GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~ 536 (856)
|+||||+|||++++.|||+|+++|.+++||+|+|++|+...
T Consensus 187 g~GlGL~i~~~i~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 227 (244)
T 3d36_A 187 GTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLASS 227 (244)
T ss_dssp CCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC-
T ss_pred CcchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEecCCCC
Confidence 89999999999999999999999999999999999998653
No 12
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.98 E-value=1.3e-31 Score=282.98 Aligned_cols=195 Identities=16% Similarity=0.153 Sum_probs=152.8
Q ss_pred HHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHHHHHH
Q 003018 263 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 342 (856)
Q Consensus 263 fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~ll~~v 342 (856)
+.++|||||||||++|.|++++|.+...++..+++++.|.++++++.. +++++++..+.. ....++++.++..
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~~~~~~----ll~~~r~~~~~~-~~~~~~~~~~l~~-- 121 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKLAD----LLQFTRVAFGAS-ASAENFDSRELEK-- 121 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHH----HHHHHHHHTTCC-SSCCCEEHHHHHH--
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH----HHHHHHHhhccc-cccccccHHHHHH--
Confidence 667899999999999999999998877777788889999888877654 556777755542 2345677766543
Q ss_pred HHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEeeccccchhhhhhhccccC
Q 003018 343 LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKN 421 (856)
Q Consensus 343 ~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~ 421 (856)
.+...+..+++++...+++.. ++..+.|++.||++||+||++. |.|.|++...+
T Consensus 122 --~~~~~~~~~~i~l~~~~~~~~------~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~----------------- 176 (247)
T 4fpp_A 122 --LAQGVFAHVRPTLDWQIEPQA------MNKPSSRAVLNIAQIAASALPAGGVATVKGVAAD----------------- 176 (247)
T ss_dssp --HHHHHHTTSSSEEEECCCSCE------ECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEET-----------------
T ss_pred --HHHHHHHhhhhhccccccchh------hhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEEC-----------------
Confidence 444556778888877554321 3578899999999999999976 56777664321
Q ss_pred cCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCC--CChhhHhhhcCccccCCCCCCCCCCcccc
Q 003018 422 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG--IPLEAQSRIFTPFMQVGPSISRTHGGTGI 499 (856)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G--I~~e~~~~iF~pF~q~d~s~~~~~~GtGL 499 (856)
..+.|+|+|+|+| ||++..+++|++|++. ..+|+||
T Consensus 177 ------------------------------------~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~------~~~G~GL 214 (247)
T 4fpp_A 177 ------------------------------------GRFSIIADAKGPRARLRPEVLAGLKGEPLAE------GLGGPWV 214 (247)
T ss_dssp ------------------------------------TEEEEEEEEESTTCCCCHHHHHHHTTCCCCS------SCHHHHH
T ss_pred ------------------------------------CEEEEEEEEcCCCCCCCHHHHHHhcCCCCCC------CCCCccH
Confidence 1456888888866 7899999999999753 3469999
Q ss_pred hHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEE
Q 003018 500 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 532 (856)
Q Consensus 500 GLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp 532 (856)
||+|||+||+.|||+|+++|.+| |++|+|+||
T Consensus 215 GLai~~~iv~~hGG~i~v~s~~~-G~~f~v~LP 246 (247)
T 4fpp_A 215 QAAYLNALVRAAGGQIAVEIGED-RASIAAWVP 246 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETT-EEEEEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEEcCC-EEEEEEEec
Confidence 99999999999999999999876 999999998
No 13
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.95 E-value=5.6e-28 Score=270.95 Aligned_cols=202 Identities=16% Similarity=0.225 Sum_probs=159.9
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 003018 258 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 337 (856)
Q Consensus 258 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~L~~ 337 (856)
.+|.+|+.+++||||||++.+.++.+.+.. +.+..++++|..+++++++++.- ...+++..
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~~--------~~~~~~~~ 68 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVMK--------IRMVPISF 68 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHHH--------HHEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHHH--------cceecHHH
Confidence 568899999999999999999988765542 56788889999999999998742 23467789
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHH---HHHHHHHHHHHHHhhcC-------------CCCeEEEEEE
Q 003018 338 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG---RFRQIITNLMGNSIKFT-------------EKGHIFVTVY 401 (856)
Q Consensus 338 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~---rl~qIl~NLl~NAiKfT-------------~~G~I~v~v~ 401 (856)
+++.+...++..+..++.++.+.++... +..|+. ++.|+|.||+.||+||+ +.|.|.|+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~---~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~ 145 (379)
T 1b3q_A 69 VFNRFPRMVRDLAKKMNKEVNFIMRGED---TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSAR 145 (379)
T ss_dssp HHTTHHHHHHHHHHHTTCCEEEEEECTT---CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEcCCC---eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEE
Confidence 9999999999999888877777776542 345775 55666999999999996 5678887764
Q ss_pred EeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhH-----
Q 003018 402 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ----- 476 (856)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~----- 476 (856)
... ..+.|+|+|+|+||+++.+
T Consensus 146 ~~~-----------------------------------------------------~~v~i~V~D~G~Gi~~~~~~~~a~ 172 (379)
T 1b3q_A 146 HEG-----------------------------------------------------NNVVIEVEDDGRGIDKEKIIRKAI 172 (379)
T ss_dssp EET-----------------------------------------------------TEEEEEEEECSCCCCHHHHHHHHH
T ss_pred EeC-----------------------------------------------------CEEEEEEEECCCCCCHHHHHHHHH
Confidence 321 2578999999999999987
Q ss_pred -------------------hhhcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 477 -------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 477 -------------------~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
++||+|||+.... .+..+|+||||+|||++++.|||+|+++|.+|+||+|++++|+..
T Consensus 173 ~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~-~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl~~ 249 (379)
T 1b3q_A 173 EKGLIDESKAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTL 249 (379)
T ss_dssp HSSSCCSTTTTTSCTHHHHSGGGSTTCC------------CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSC
T ss_pred HcCCCChhhhhcCCHHHHHHHhcCCCCccCCc-cCCCCCccccHHHHHHHHHHCCCEEEEEEcCCCCeEEEeccCCcc
Confidence 8999999886544 234579999999999999999999999999999999999999864
No 14
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.94 E-value=3.6e-26 Score=217.23 Aligned_cols=121 Identities=31% Similarity=0.482 Sum_probs=111.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~-v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
+.|||||||++.+|.+++.+|++.||. |.+|.||.+|++.+. .+.||+||+|++||+|||+|++++||+.+
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~-~~~~DlillD~~MP~mdG~el~~~ir~~~------- 83 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK-KGDFDFVVTDWNMPGMQGIDLLKNIRADE------- 83 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHHST-------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHHhCC-------
Confidence 358999999999999999999999996 778999999999985 56899999999999999999999999742
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
..+++|||++|+....+...+|+++|++|||+|||+.++|..+|+++++.
T Consensus 84 -------------~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 84 -------------ELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp -------------TTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred -------------CCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 24589999999999999999999999999999999999999999998864
No 15
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.92 E-value=2.1e-24 Score=222.49 Aligned_cols=190 Identities=9% Similarity=0.079 Sum_probs=144.2
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeec
Q 003018 257 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFN 334 (856)
Q Consensus 257 ~~aks~fla~iSHElRTPL~~I~g~~~lL~~~--~l~~~q~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~ 334 (856)
...+.++...+.|++++||++|.+.++++... ...+...+.+..+......+...+.+++... .+.+
T Consensus 25 ~~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~ 93 (218)
T 3ehh_A 25 LEERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIR 93 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcC
Confidence 34567899999999999999999999987542 2223346677777777777777777765432 2467
Q ss_pred HHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhh
Q 003018 335 LRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVET 414 (856)
Q Consensus 335 L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~ 414 (856)
+.+.++.+...+ ..+++.+.+.++...+.....++..+.+|+.||++||+||++.|.|.|.+...+
T Consensus 94 l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~---------- 159 (218)
T 3ehh_A 94 LKDELINIKQIL----EAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLW---------- 159 (218)
T ss_dssp HHHHHHHHHHHH----HHTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEET----------
T ss_pred HHHHHHHHHHHH----HhcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEeC----------
Confidence 888877776655 467888888776554444467889999999999999999998888887775321
Q ss_pred hhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCC
Q 003018 415 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 494 (856)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~ 494 (856)
..+.|+|.|+|+|||++..
T Consensus 160 -------------------------------------------~~~~i~V~D~G~Gi~~~~~------------------ 178 (218)
T 3ehh_A 160 -------------------------------------------KEVVITVSDDGTFKGEENS------------------ 178 (218)
T ss_dssp -------------------------------------------TEEEEEEEESSCCCC----------------------
T ss_pred -------------------------------------------CEEEEEEEECCcCCCCCCC------------------
Confidence 2478999999999999865
Q ss_pred CcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 003018 495 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 495 ~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 534 (856)
+|+||||+|||++++.|||+|++.|.+ ||+|+|++|+.
T Consensus 179 ~g~GlGL~~~~~~v~~~gG~i~~~s~~--Gt~~~i~lP~~ 216 (218)
T 3ehh_A 179 FSKGHGLLGMRERLEFANGSLHIDTEN--GTKLTMAIPNN 216 (218)
T ss_dssp ----CHHHHHHHHHHHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred CCCCCCHHHHHHHHHHcCCEEEEeCCC--CeEEEEEEecC
Confidence 589999999999999999999999999 99999999974
No 16
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.92 E-value=2.2e-24 Score=209.17 Aligned_cols=145 Identities=23% Similarity=0.379 Sum_probs=127.6
Q ss_pred EeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccch
Q 003018 331 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 410 (856)
Q Consensus 331 ~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~ 410 (856)
++++|.+++++++..+...+..+++.+.+.+++.. .+.+|+..|.||+.||++||+||++. .|.|++...+
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~~------ 72 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQTD------ 72 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEECS------
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc--eEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEecC------
Confidence 47899999999999999999999999999887654 48899999999999999999999976 6666553211
Q ss_pred hhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCC
Q 003018 411 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 490 (856)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~ 490 (856)
..+.|+|+|+|+||+++.++++|+||++.+.+
T Consensus 73 -----------------------------------------------~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~- 104 (152)
T 1id0_A 73 -----------------------------------------------EHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL- 104 (152)
T ss_dssp -----------------------------------------------SCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC-
T ss_pred -----------------------------------------------CEEEEEEEeCCCCcCHHHHHHHhccceeccCC-
Confidence 24789999999999999999999999986543
Q ss_pred CCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 491 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 491 ~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
.+|+||||+||+++++.|||+|.++|.++.||+|+|++|+..
T Consensus 105 ---~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~ 146 (152)
T 1id0_A 105 ---RPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQH 146 (152)
T ss_dssp ---CTTCCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEEECCCC
T ss_pred ---CCCcccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeccc
Confidence 368999999999999999999999999999999999999854
No 17
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.92 E-value=1.9e-24 Score=209.36 Aligned_cols=146 Identities=16% Similarity=0.303 Sum_probs=116.5
Q ss_pred EeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeecccc
Q 003018 329 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 408 (856)
Q Consensus 329 ~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~ 408 (856)
+..++||.+++++++..+...+. ++.+.+..+ .+..+.+|+.+|.||+.||++||+||++.|.|.|++...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~--~~~i~~~~~--~~~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~~---- 75 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIYP--DLDVSLVPS--PTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSR---- 75 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHST--TCEEEECSC--CCCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEET----
T ss_pred cccccCHHHHHHHHHHHHHHhcc--CCceEEccC--CCceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC----
Confidence 45689999999999999877654 555555543 3457889999999999999999999999897777664321
Q ss_pred chhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCC
Q 003018 409 SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 488 (856)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~ 488 (856)
..+.|+|.|+|+||+++.++++|+||++.+.
T Consensus 76 -------------------------------------------------~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~ 106 (150)
T 1ysr_A 76 -------------------------------------------------AGVEIAIDDNGSGVPEGERQVVFERFSRGST 106 (150)
T ss_dssp -------------------------------------------------TEEEEEEEESSSCCCGGGHHHHHTSCC----
T ss_pred -------------------------------------------------CEEEEEEEECCCCCCHHHHHHHhcccccCCC
Confidence 1478999999999999999999999998643
Q ss_pred CCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 003018 489 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 489 s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 534 (856)
+ ..+|+||||+|||++++.|||+|++.|.++.||+|++++|+.
T Consensus 107 ~---~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 149 (150)
T 1ysr_A 107 A---SHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPGP 149 (150)
T ss_dssp ----------CCCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEECC
T ss_pred C---CCCCCCcCHHHHHHHHHHcCCEEEEeecCCCCEEEEEEEeCC
Confidence 2 357999999999999999999999999999999999999963
No 18
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.91 E-value=7.1e-24 Score=211.55 Aligned_cols=153 Identities=28% Similarity=0.474 Sum_probs=126.5
Q ss_pred eecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEeeccccch
Q 003018 332 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSI 410 (856)
Q Consensus 332 ~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~ 410 (856)
++||.++++++++.+... ..+++.+.+.+++. +..+.+|+.+|.+||.|||+||+||+.. |.|.|.+....
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~------ 73 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDR-DLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNE------ 73 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSS-CCEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEET------
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCC-CcEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEcc------
Confidence 689999999999999988 88999999888664 4468899999999999999999999954 67777664321
Q ss_pred hhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCC
Q 003018 411 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 490 (856)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~ 490 (856)
+...+.|+|.|+|+||+++.++++|+||++.+.+.
T Consensus 74 ---------------------------------------------~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~ 108 (177)
T 3sl2_A 74 ---------------------------------------------EEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKAR 108 (177)
T ss_dssp ---------------------------------------------TTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC---
T ss_pred ---------------------------------------------CCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCC
Confidence 11247899999999999999999999999987776
Q ss_pred CCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCC
Q 003018 491 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 537 (856)
Q Consensus 491 ~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~ 537 (856)
+...+|+||||+||+++++.|||+|.+.|.++.||+|+|++|+....
T Consensus 109 ~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~~~~Gt~~~i~lP~~~~~ 155 (177)
T 3sl2_A 109 TRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLPYKEEQ 155 (177)
T ss_dssp ---CCCCCCHHHHHHHHHHHTTCCEEEEEETTTEEEEEEEEEEEC--
T ss_pred CCCCCCCCcCHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEeCCCCc
Confidence 66778999999999999999999999999999999999999997543
No 19
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.91 E-value=1.7e-23 Score=202.53 Aligned_cols=146 Identities=30% Similarity=0.466 Sum_probs=126.1
Q ss_pred EeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcC-CCCeEEEEEEEeeccc
Q 003018 329 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVV 407 (856)
Q Consensus 329 ~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT-~~G~I~v~v~~~~~~~ 407 (856)
+..++||.+++++++..+...+..+++++.+.+++. +..+.+|+..|.||+.||++||+||+ +.|.|.|.+...
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~~---- 76 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNE-DLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM---- 76 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCS-SCEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEC----
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCC-CcEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEec----
Confidence 457899999999999999999999999999988754 44688999999999999999999999 567777766421
Q ss_pred cchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCC
Q 003018 408 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 487 (856)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d 487 (856)
...+.|+|+|+|+||+++.++++|+||++.+
T Consensus 77 -------------------------------------------------~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~ 107 (152)
T 3a0y_A 77 -------------------------------------------------YTKVRVSVWNSGPPIPEELKEKIFSPFFTTK 107 (152)
T ss_dssp -------------------------------------------------SSEEEEEEEEESCCCCGGGTTGGGSTTCCCC
T ss_pred -------------------------------------------------CCEEEEEEEeCCCCcCHHHHHhHhhhhccCC
Confidence 1247899999999999999999999998642
Q ss_pred CCCCCCCCcccchHHHHHHHHH-HcCCEEEEEEeCCCceEEEEEEEeCC
Q 003018 488 PSISRTHGGTGIGLSISKYLVG-RMKGEIGFVSIPNIGSTFTFTAVFGN 535 (856)
Q Consensus 488 ~s~~~~~~GtGLGLsI~k~lv~-~mgG~I~v~S~~g~GstF~~~lp~~~ 535 (856)
.+|+||||+|||++++ .|||.+.+++.++ |++|+|++|...
T Consensus 108 ------~~g~GlGL~i~~~~~~~~~gg~~~~~~~~~-g~~~~i~lP~~~ 149 (152)
T 3a0y_A 108 ------TQGTGLGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIPKTP 149 (152)
T ss_dssp --------CCCCSHHHHHHHHHTTTSCEEEEEEETT-EEEEEEEEESCC
T ss_pred ------CCCCCcCHHHHHHHHHHhCCcEEEEecCCC-CEEEEEEeCCCC
Confidence 3689999999999999 9999999999865 999999999753
No 20
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.91 E-value=3.8e-24 Score=219.33 Aligned_cols=123 Identities=37% Similarity=0.584 Sum_probs=107.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHhCCC------------CCccEEEEeCCCCCCCHHHHHHH
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPP------------HQFDACFMDIQMPEMDGFEATKI 775 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~-~v~~a~~g~eA~~~l~~~------------~~~DlilmDi~MP~mdG~e~~~~ 775 (856)
+.+||||||++.++..+..+|++.|+ .|..+.++.+|++.+... ..||+||+|++||+|||++++++
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~ 140 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATRE 140 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHH
Confidence 46899999999999999999999999 999999999999988531 37999999999999999999999
Q ss_pred HHhhcccccccccccccchhhhccCCCCCCcEEEEecCC-CHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 776 IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV-IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 776 IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~-~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
||+.+.. ..+++|||++|+.. ..+...+|+++|+++||.||++ +|..+|++++...
T Consensus 141 lr~~~~~------------------~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 141 IRKVEKS------------------YGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKR 197 (206)
T ss_dssp HHHHHHT------------------TTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC---
T ss_pred HHhhhhh------------------cCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhh
Confidence 9985321 13579999999998 7788899999999999999999 9999999988654
No 21
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.91 E-value=1e-23 Score=206.90 Aligned_cols=149 Identities=23% Similarity=0.322 Sum_probs=124.3
Q ss_pred eeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeecc
Q 003018 327 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 406 (856)
Q Consensus 327 ~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~ 406 (856)
++...++||.+++++++..+.. ++..+.+.+.+. +..+.+|+.+|.||+.||++||+||+ .|.|.|.+...+
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~~~-~~~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~~-- 75 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAESG----YEREIETALYPG-SIEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTEP-- 75 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCS----SSCCEEEECCSS-CCCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEET--
T ss_pred cccccccCHHHHHHHHHHHhhh----hcceEEEEecCC-CceEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEcC--
Confidence 4556789999999999998653 344455554333 34688999999999999999999999 888888775321
Q ss_pred ccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccC
Q 003018 407 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 486 (856)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~ 486 (856)
..+.|.|+|+|+||+++.++++|+||++.
T Consensus 76 ---------------------------------------------------~~~~i~i~D~G~gi~~~~~~~~f~~f~~~ 104 (161)
T 1bxd_A 76 ---------------------------------------------------NRAWFQVEDDGPGIAPEQRKHLFQPFVRG 104 (161)
T ss_dssp ---------------------------------------------------TEEEEEEEEESSCSCTTGGGCSSCCCCCC
T ss_pred ---------------------------------------------------CEEEEEEEeCCCCCCHHHHHHhCCCceeC
Confidence 14789999999999999999999999997
Q ss_pred CCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCC
Q 003018 487 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 536 (856)
Q Consensus 487 d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~ 536 (856)
+.+ +..+|+||||+|||++++.|||+|+++|.++.|++|++++|+...
T Consensus 105 ~~~--~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 152 (161)
T 1bxd_A 105 DSA--RTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVT 152 (161)
T ss_dssp SCC--CCCCCCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEECCCSC
T ss_pred CCC--CCCCCcccCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEEeCCcc
Confidence 653 334799999999999999999999999999999999999998643
No 22
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.90 E-value=1.9e-23 Score=203.93 Aligned_cols=156 Identities=26% Similarity=0.418 Sum_probs=111.2
Q ss_pred eeEeEeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCC--CCeEEEEEEEee
Q 003018 327 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE--KGHIFVTVYLVE 404 (856)
Q Consensus 327 ~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~--~G~I~v~v~~~~ 404 (856)
.++..+++|.+++++++..+... ..+++++.+.+++..+ .+.+|+.+|.||+.||++||+||+. .|.|.|++....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~-~i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~ 79 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF 79 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCC-CEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCC-eeeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeccc
Confidence 45678899999999999999987 8889999998877665 4789999999999999999999997 677877775432
Q ss_pred ccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccc
Q 003018 405 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 484 (856)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~ 484 (856)
.... ....+...+.|+|+|+|+||+++.++++|+||+
T Consensus 80 ~~~~-------------------------------------------~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~ 116 (160)
T 1r62_A 80 QLTL-------------------------------------------HGERYRLAARIDVEDNGPGIPPHLQDTLFYPMV 116 (160)
T ss_dssp EEEE-------------------------------------------TTEEEEEEEEEEEEEECTTC-------------
T ss_pred cccc-------------------------------------------cccccccEEEEEEEeCCCCCCHHHHHHhhCccc
Confidence 2000 001122357899999999999999999999999
Q ss_pred cCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 003018 485 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 485 q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 534 (856)
+.+ .+|+||||+||+++++.|||+|+++|.++. |+|+|++|+.
T Consensus 117 ~~~------~~g~GlGL~i~~~~~~~~gG~l~i~s~~~~-~~~~i~lP~~ 159 (160)
T 1r62_A 117 SGR------EGGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPIR 159 (160)
T ss_dssp -------------CHHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEEEEE
T ss_pred cCC------CCCCccCHHHHHHHHHHCCCeEEEEeCCCC-EEEEEEEecc
Confidence 743 368999999999999999999999999987 9999999974
No 23
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.90 E-value=1.3e-22 Score=215.46 Aligned_cols=237 Identities=19% Similarity=0.259 Sum_probs=173.1
Q ss_pred cEEEEeCCchhhhHHHHHHHHH-hCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQR-LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
.++|+||+++..+......|.. .|+.+...+... ++..+ ....++++++|..+...++.. ++..++.. .
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~~~~~-~~~~~--~~~~~dlvllD~~mP~~~G~~---~~~~lr~~----~ 74 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDAFDTLE-GARHC--QGDEYVVALVDLTLPDAPSGE---AVKVLLER----G 74 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEEESSTG-GGTTC--CTTTEEEEEEESCBTTBTTSH---HHHHHHHT----T
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEEeChHH-HHHHh--hcCCCcEEEEeCCCCCCCHHH---HHHHHHhC----C
Confidence 4799999999888877777755 689887665543 33322 234688999998776655432 34444442 2
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHH--HHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEcCC
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAAS--LQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 718 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn 718 (856)
.++++++...+....... -..|...++.||...+..... +.+.. .....+||||||+
T Consensus 75 ~pvi~lt~~~~~~~~~~a-~~~Ga~dyl~Kp~~~~~~~~~~~~~~~~--------------------~~~~~~ILivDD~ 133 (259)
T 3luf_A 75 LPVVILTADISEDKREAW-LEAGVLDYVMKDSRHSLQYAVGLVHRLY--------------------LNQQIEVLVVDDS 133 (259)
T ss_dssp CCEEEEECC-CHHHHHHH-HHTTCCEEEECSSHHHHHHHHHHHHHHH--------------------HHTTCEEEEECSC
T ss_pred CCEEEEEccCCHHHHHHH-HHCCCcEEEeCCchhHHHHHHHhhhhHh--------------------hcCCCcEEEEeCC
Confidence 334444433222111111 123567899999865532221 11111 0124589999999
Q ss_pred HHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhc
Q 003018 719 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYE 798 (856)
Q Consensus 719 ~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~ 798 (856)
+.++..+...|+..|+.|..+.+|.+|++.+.....||+||+|++||+|||++++++||+..+
T Consensus 134 ~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~----------------- 196 (259)
T 3luf_A 134 RTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYS----------------- 196 (259)
T ss_dssp HHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCC-----------------
T ss_pred HHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccC-----------------
Confidence 999999999999999999999999999998853335899999999999999999999997421
Q ss_pred cCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 799 NVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 799 ~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
..++|||++|+....+...+|+++|++|||.||++.++|...|++.+.
T Consensus 197 ---~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 244 (259)
T 3luf_A 197 ---KQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLE 244 (259)
T ss_dssp ---TTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ---CCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999987653
No 24
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.90 E-value=4.4e-22 Score=210.81 Aligned_cols=239 Identities=21% Similarity=0.285 Sum_probs=175.3
Q ss_pred cccCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcC
Q 003018 557 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 636 (856)
Q Consensus 557 ~~~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~ 636 (856)
..++|.+++++++++..+......|+.||+++..+.+. ....++++++|........
T Consensus 7 ~~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~---------~~~~~~~ii~d~~~~~~~~-------------- 63 (254)
T 2ayx_A 7 EGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ---------EPTPEDVLITDEVVSKKWQ-------------- 63 (254)
T ss_dssp CTTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC---------CCCTTCEEEEESSCSCCCC--------------
T ss_pred cccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC---------CCCcCcEEEEcCCCccccc--------------
Confidence 45789999999999999999999999999999887641 2345778888765422111
Q ss_pred CCCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCc-chhhhcCCCCeEEEE
Q 003018 637 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLLGRKILIV 715 (856)
Q Consensus 637 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ILvV 715 (856)
....+.+....... .........+.+|.....+...+.+...............+. ........+.+||||
T Consensus 64 ---~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILiv 135 (254)
T 2ayx_A 64 ---GRAVVTFCRRHIGI-----PLEKAPGEWVHSVAAPHELPALLARIYLIEMESDDPANALPSTDKAVSDNDDMMILVV 135 (254)
T ss_dssp ---SSEEEEECSSCCCS-----CCTTSTTEEEECSSCCSHHHHHHHHHHTCCCSCCCCCCSCCCSCCCCCCCCCCEEEEE
T ss_pred ---cceEEEEecccCCC-----cccccCCceeccccchHHHHHHHHHHhhhccccccccccCCCccccccCCCCCEEEEE
Confidence 01122222111000 001122346678888777777777655322111000000000 001112345789999
Q ss_pred cCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchh
Q 003018 716 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIE 795 (856)
Q Consensus 716 dDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~ 795 (856)
|||+.++..+..+|++.||.|..+.+|.+|++.+. .+.||+||||++||+|||++++++||+..
T Consensus 136 dd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-~~~~dlvl~D~~mp~~~G~~l~~~ir~~~--------------- 199 (254)
T 2ayx_A 136 DDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS-KNHIDIVLSDVNMPNMDGYRLTQRIRQLG--------------- 199 (254)
T ss_dssp ESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHH-HSCCSEEEEEESSCSSCCHHHHHHHHHHH---------------
T ss_pred eCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHHhcC---------------
Confidence 99999999999999999999999999999999985 46799999999999999999999999742
Q ss_pred hhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 796 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 796 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
+++|||++|+....+...+|+++||++|+.||++.++|...|.+++.
T Consensus 200 -------~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 200 -------LTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp -------CCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred -------CCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999998763
No 25
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.89 E-value=5.6e-23 Score=207.31 Aligned_cols=149 Identities=17% Similarity=0.265 Sum_probs=122.7
Q ss_pred EeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcC-------------CCCeEE
Q 003018 331 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-------------EKGHIF 397 (856)
Q Consensus 331 ~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT-------------~~G~I~ 397 (856)
.+++|.++++++...+...+..+++.+.+.++.........+..++.|||.||++||+||+ ..|.|.
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~ 82 (189)
T 1i58_A 3 HMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLI 82 (189)
T ss_dssp SEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEE
T ss_pred eEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeEE
Confidence 4789999999999999999999999988887755432223445667777999999999995 456777
Q ss_pred EEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhH-
Q 003018 398 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ- 476 (856)
Q Consensus 398 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~- 476 (856)
|.+...+ ..+.|+|+|+|+||+++.+
T Consensus 83 I~~~~~~-----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~ 109 (189)
T 1i58_A 83 LSARHEG-----------------------------------------------------NNVVIEVEDDGRGIDKEKII 109 (189)
T ss_dssp EEEEEET-----------------------------------------------------TEEEEEEEECSSCCCHHHHH
T ss_pred EEEEecC-----------------------------------------------------CEEEEEEEeCCCCcCHHHHh
Confidence 7664321 2478999999999999986
Q ss_pred -----------------------hhhcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 003018 477 -----------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 533 (856)
Q Consensus 477 -----------------------~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 533 (856)
+++|+||++.... .+..+|+||||+||+++++.|||+|++.|.++.||+|++++|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~-~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt~~~i~lPl 188 (189)
T 1i58_A 110 RKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPL 188 (189)
T ss_dssp HHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHH-HHGGGTCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred hhhhhccchhhhhhcccchhhhHHHhcCCccccccc-CCCCCCCccCHHHHHHHHHHcCCEEEEEeCCCCceEEEEEEeC
Confidence 9999999986432 2334689999999999999999999999999999999999997
No 26
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.87 E-value=1.5e-23 Score=195.89 Aligned_cols=114 Identities=19% Similarity=0.269 Sum_probs=102.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
+.|||||||++.++..++.+|++.||+|. +|.||.+|++++. .+.||+||+|++||+|||++++++||+.
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~-~~~~DlvllDi~mP~~~G~el~~~lr~~-------- 78 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIAR-KGQFDIAIIDVNLDGEPSYPVADILAER-------- 78 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHH-HCCSSEEEECSSSSSCCSHHHHHHHHHT--------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-hCCCCEEEEecCCCCCCHHHHHHHHHcC--------
Confidence 35899999999999999999999999986 7999999999985 5789999999999999999999999962
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
++|||++||+...+. +.++|+++||.|||+.++|..+|+++.+.
T Consensus 79 ----------------~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~~ 122 (123)
T 2lpm_A 79 ----------------NVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISKE 122 (123)
T ss_dssp ----------------CCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCSC
T ss_pred ----------------CCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHhh
Confidence 589999999876554 34689999999999999999999988653
No 27
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.85 E-value=1.1e-20 Score=175.97 Aligned_cols=119 Identities=32% Similarity=0.444 Sum_probs=110.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
++||||||++..+..++..|++.||.|..+.+|.+|++.+. .+.||+||+|++||+|||++++++||+..
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~-~~~~dlvllD~~~p~~~g~~~~~~l~~~~--------- 72 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS-EFTPDLIVLXIMMPVMDGFTVLKKLQEKE--------- 72 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT-TBCCSEEEECSCCSSSCHHHHHHHHHTST---------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH-hcCCCEEEEeccCCCCcHHHHHHHHHhcc---------
Confidence 58999999999999999999999999999999999999985 56899999999999999999999999732
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+.
T Consensus 73 -----------~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 73 -----------EWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp -----------TTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred -----------cccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 2357999999999999999999999999999999999999999988754
No 28
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.83 E-value=5.6e-20 Score=170.62 Aligned_cols=117 Identities=31% Similarity=0.508 Sum_probs=108.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
++||||||++..+..++..|++.||.|.++.++.+|++.+. .+.||+||+|+.||+|||++++++||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlii~D~~~p~~~g~~~~~~lr~~---------- 71 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE-ELQPDLILLDIMLPNKDGVEVCREVRKK---------- 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-TTCCSEEEEETTSTTTHHHHHHHHHHTT----------
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 58999999999999999999999999999999999999985 5679999999999999999999999962
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.++|||++|+........+++++|+++|+.||++.++|..+|++.+..
T Consensus 72 -------------~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 72 -------------YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp -------------CCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred -------------CCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 258999999999999999999999999999999999999999887653
No 29
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.83 E-value=4.3e-20 Score=175.53 Aligned_cols=122 Identities=25% Similarity=0.393 Sum_probs=110.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+. .+.||+||+|+.||+|||++++++||+..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~lp~~~g~~~~~~lr~~~-------- 74 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIY-KNLPDALICDVLLPGIDGYTLCKRVRQHP-------- 74 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHSG--------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHcCC--------
Confidence 358999999999999999999999999999999999999885 46799999999999999999999999732
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+...
T Consensus 75 ------------~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 75 ------------LTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp ------------GGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred ------------CcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 134689999999999999999999999999999999999999999877543
No 30
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.83 E-value=1.1e-19 Score=172.09 Aligned_cols=121 Identities=35% Similarity=0.564 Sum_probs=108.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHhCC----CCCccEEEEeCCCCCCCHHHHHHHHHhhccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMP----PHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~-~v~~a~~g~eA~~~l~~----~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~ 784 (856)
.+||||||++.++..++.+|+..|+ .|..+.+|.+|++.+.. ...||+||+|++||+|||++++++||+..
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~---- 78 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDL---- 78 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHS----
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhc----
Confidence 4799999999999999999999997 58899999999998742 15699999999999999999999999621
Q ss_pred ccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 785 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
.+.+|||++|+....+...+|+++|+++||.||++.++|..+|++++...
T Consensus 79 -----------------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 128 (133)
T 2r25_B 79 -----------------GYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY 128 (133)
T ss_dssp -----------------CCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC
T ss_pred -----------------CCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Confidence 23579999999999999999999999999999999999999999987654
No 31
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.82 E-value=4e-21 Score=206.96 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=106.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNR 786 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~ 786 (856)
+.+|||||||+.++..++.+|++.||.|. +|.||.+|++.+. .+.||+||||++|| +|||++++++||+.
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~-~~~~dlvl~D~~MPd~mdG~e~~~~ir~~------- 231 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVT-RRTPGLVLADIQLADGSSGIDAVKDILGR------- 231 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HCCCSEEEEESCCTTSCCTTTTTHHHHHH-------
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHH-hCCCCEEEEcCCCCCCCCHHHHHHHHHhc-------
Confidence 45899999999999999999999999999 9999999999985 46799999999999 89999999999973
Q ss_pred ccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
. ++|||++|+.. +...+|+++||++||.|||+.++|..+|.+++...
T Consensus 232 ---------------~-~~piI~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~ 278 (286)
T 3n0r_A 232 ---------------M-DVPVIFITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFFH 278 (286)
T ss_dssp ---------------T-TCCEEEEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHS
T ss_pred ---------------C-CCCEEEEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhC
Confidence 1 69999999985 45677999999999999999999999999988643
No 32
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.82 E-value=9.3e-20 Score=171.29 Aligned_cols=122 Identities=28% Similarity=0.425 Sum_probs=110.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~-v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
+.+||||||++..+..++.+|++.|+. |..+.++.+|++.+.....||+||+|++||+|||++++++||+..
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~------- 77 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDS------- 77 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTST-------
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-------
Confidence 358999999999999999999999995 899999999999875445799999999999999999999999732
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
..+++|||++|+....+...+|+++|+++|+.||++.++|..+|++.+..
T Consensus 78 -------------~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 78 -------------RFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp -------------TCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred -------------CCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 23578999999999999999999999999999999999999999988765
No 33
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.82 E-value=8.1e-20 Score=172.22 Aligned_cols=125 Identities=12% Similarity=0.084 Sum_probs=101.0
Q ss_pred ecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhh
Q 003018 333 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 412 (856)
Q Consensus 333 ~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~ 412 (856)
++|.+.++.+.. .+..+++++.+.++...+.....++..+.||+.||++||+||++.+.|.|++...+
T Consensus 2 v~l~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~-------- 69 (128)
T 3ehg_A 2 IRLKDELINIKQ----ILEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLW-------- 69 (128)
T ss_dssp CCHHHHHHHHHH----HHHHTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEET--------
T ss_pred ccHHHHHHHHHH----HHHHcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEeC--------
Confidence 455555555554 44577898888776544444456889999999999999999998888888774321
Q ss_pred hhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCC
Q 003018 413 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 492 (856)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~ 492 (856)
..+.|+|+|+|+||+++.+
T Consensus 70 ---------------------------------------------~~~~i~V~D~G~Gi~~~~~---------------- 88 (128)
T 3ehg_A 70 ---------------------------------------------KEVVITVSDDGTFKGEENS---------------- 88 (128)
T ss_dssp ---------------------------------------------TEEEEEEEESSCCCSCSSC----------------
T ss_pred ---------------------------------------------CEEEEEEEECCcCcCcccC----------------
Confidence 2478999999999998754
Q ss_pred CCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 003018 493 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 493 ~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 534 (856)
+|+||||+|||++++.|||+|+++|.+ ||+|++++|+.
T Consensus 89 --~g~GlGL~~~~~~~~~~gG~i~~~s~~--Gt~~~i~lP~~ 126 (128)
T 3ehg_A 89 --FSKGHGLLGMRERLEFANGSLHIDTEN--GTKLTMAIPNN 126 (128)
T ss_dssp --CCTTSHHHHHHHHHHHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred --CCCCccHHHHHHHHHHcCCEEEEEeCC--CEEEEEEEecC
Confidence 589999999999999999999999998 99999999974
No 34
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.7e-19 Score=173.01 Aligned_cols=124 Identities=24% Similarity=0.492 Sum_probs=108.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
+.+||||||++..+..++.+|++.|+.|.++.++.+|++.+. .+.||+||+|++||+|||++++++||+....
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~------ 86 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA-EEDYDAVIVDLHMPGMNGLDMLKQLRVMQAS------ 86 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHHHHT------
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhchhc------
Confidence 468999999999999999999999999999999999999885 4679999999999999999999999974321
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
..+++|||++|+....+...+|+++|+++||.||++.++|..+|.++....
T Consensus 87 ------------~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~ 137 (143)
T 3m6m_D 87 ------------GMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVST 137 (143)
T ss_dssp ------------TCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC---
T ss_pred ------------cCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHhh
Confidence 234689999999999999999999999999999999999999999987543
No 35
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.81 E-value=2.6e-19 Score=168.47 Aligned_cols=125 Identities=22% Similarity=0.349 Sum_probs=105.2
Q ss_pred EeecHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccch
Q 003018 331 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 410 (856)
Q Consensus 331 ~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~ 410 (856)
.+++|.+++++++..+ ..+++.+.+.++...+.....|+..|.||+.||++||+||++.|.|.|++...
T Consensus 3 ~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~~------- 71 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKVD------- 71 (129)
T ss_dssp --CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEES-------
T ss_pred ccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEc-------
Confidence 4689999999998877 56788888887766554444569999999999999999999889888876431
Q ss_pred hhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCC
Q 003018 411 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 490 (856)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~ 490 (856)
.. +.|+|.|+|+||+++.
T Consensus 72 ----------------------------------------------~~-~~i~v~D~G~gi~~~~--------------- 89 (129)
T 3zxo_A 72 ----------------------------------------------DD-LCIEVTDNGRGMPDEF--------------- 89 (129)
T ss_dssp ----------------------------------------------SE-EEEEEEECCCCCTTTT---------------
T ss_pred ----------------------------------------------CC-EEEEEecCCCCCCccc---------------
Confidence 12 6799999999999764
Q ss_pred CCCCCcccchHHHHHHHHHHcCCEEEEEEeCC-CceEEEEEEEeC
Q 003018 491 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAVFG 534 (856)
Q Consensus 491 ~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g-~GstF~~~lp~~ 534 (856)
+||||+|||++++.|||++.+.|.++ +|++|++++|+.
T Consensus 90 ------~GlGL~i~~~~~~~~gG~i~~~~~~~~~G~~~~i~lP~~ 128 (129)
T 3zxo_A 90 ------TGSGLTNLRQRAEQAGGEFTLASMPGASGTVLRWSAPLS 128 (129)
T ss_dssp ------CSHHHHHHHHHHHHTTCEEEEEECTTTCCEEEEEEEESC
T ss_pred ------CCcCHHHHHHHHHHcCCEEEEeeCCCCCcEEEEEEecCC
Confidence 69999999999999999999999999 999999999974
No 36
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.80 E-value=1.8e-19 Score=180.70 Aligned_cols=117 Identities=23% Similarity=0.340 Sum_probs=109.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
+.+||||||++..+..++.+|+..||.|.++.+|.+|++.+. .+.||+||+|++||+|||++++++||+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~lp~~~g~~~~~~l~~~--------- 76 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAG-AEKFEFITVXLHLGNDSGLSLIAPLCDL--------- 76 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHT-TSCCSEEEECSEETTEESHHHHHHHHHH---------
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeccCCCccHHHHHHHHHhc---------
Confidence 468999999999999999999999999999999999999985 5779999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+++|||++|+....+...+|+++|+++||.||++.++|..+|.+.+
T Consensus 77 -------------~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 77 -------------QPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNA 123 (184)
T ss_dssp -------------CTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTH
T ss_pred -------------CCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999987654
No 37
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.79 E-value=3e-18 Score=160.00 Aligned_cols=119 Identities=21% Similarity=0.293 Sum_probs=109.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
+.+||||||++..+..++..|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~--------- 72 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAP-DVRNGVLVTDLRMPDMSGVELLRNLGDL--------- 72 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGG-GCCSEEEEEECCSTTSCHHHHHHHHHHT---------
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHhc---------
Confidence 358999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+..
T Consensus 73 -------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 73 -------------KINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp -------------TCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred -------------CCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999999999999999999999999987654
No 38
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.78 E-value=2.8e-18 Score=166.55 Aligned_cols=120 Identities=24% Similarity=0.370 Sum_probs=110.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
+.+||||||++..+..++.+|++.||.|.++.++.+|++.+. ...||+||+|+.||++||+++++.||+..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlii~D~~l~~~~g~~~~~~lr~~~-------- 77 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLS-LTRPDLIISDVLMPEMDGYALCRWLKGQP-------- 77 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHT-TCCCSEEEEESCCSSSCHHHHHHHHHHST--------
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhCC--------
Confidence 468999999999999999999999999999999999999995 56799999999999999999999999732
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
..+++|||++|+....+...+|+++|+++||.||++.++|..+|.+.+.
T Consensus 78 ------------~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 78 ------------DLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp ------------TTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ------------CcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 1357999999999999999999999999999999999999999988764
No 39
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.78 E-value=2.4e-18 Score=160.01 Aligned_cols=118 Identities=24% Similarity=0.376 Sum_probs=109.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..++..|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~---------- 72 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVT-KERPDLVLLDMKIPGMDGIEILKRMKVI---------- 72 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HHCCSEEEEESCCTTCCHHHHHHHHHHH----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-ccCCCEEEEecCCCCCCHHHHHHHHHHh----------
Confidence 48999999999999999999999999999999999999885 4579999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|..++++.+..
T Consensus 73 ------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 73 ------------DENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp ------------CTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred ------------CCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 2468999999999999999999999999999999999999999998764
No 40
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.78 E-value=1.7e-18 Score=160.67 Aligned_cols=121 Identities=30% Similarity=0.499 Sum_probs=104.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
++||||||++..+..++.+|+..|+.+..+.++.+|++.+. ...||+||+|+.||++||++++++||+..
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--------- 71 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAR-ENKPDLILMDIQLPEISGLEVTKWLKEDD--------- 71 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-HHCCSEEEEESBCSSSBHHHHHHHHHHST---------
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHcCc---------
Confidence 48999999999999999999999999999999999999885 45799999999999999999999999731
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+...
T Consensus 72 -----------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (124)
T 1mb3_A 72 -----------DLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQ 122 (124)
T ss_dssp -----------TTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSCC
T ss_pred -----------cccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcC
Confidence 134789999999999999999999999999999999999999999887543
No 41
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.78 E-value=2.5e-18 Score=161.34 Aligned_cols=121 Identities=30% Similarity=0.416 Sum_probs=104.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 708 ~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+++||||||++..+..++.+|++.|+.+.++.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~-------- 76 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-GFTPDLMICDIAMPRMNGLKLLEHIRNR-------- 76 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHT-TCCCSEEEECCC-----CHHHHHHHHHT--------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHHHhc--------
Confidence 3579999999999999999999999999999999999999995 5679999999999999999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCC-CHHHHHHHHhhhCCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVSRFFPPI 851 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~-~~~~L~~~l~~~~~~~ 851 (856)
.+++|||++|+....+...+++++|+++|+.||+ +.++|..++++.+...
T Consensus 77 --------------~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 77 --------------GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp --------------TCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred --------------CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 3478999999999999999999999999999999 9999999999987654
No 42
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.77 E-value=1.7e-18 Score=164.81 Aligned_cols=123 Identities=19% Similarity=0.249 Sum_probs=111.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhh-cCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKR-YGAAVVCVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNR 786 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~-~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~ 786 (856)
..+||||||++..+..++.+|+. .|+.|.++.++.+|++.+.....||+||+|+.|| ++||++++++||+..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~------ 77 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNS------ 77 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSG------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCc------
Confidence 35899999999999999999999 9999999999999999885327899999999999 999999999999721
Q ss_pred ccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
..+++|||++|+....+...+++++|+++||.||++.++|..+|.+.+...
T Consensus 78 --------------~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 78 --------------RTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp --------------GGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred --------------ccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 135799999999999999999999999999999999999999999887654
No 43
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.77 E-value=4.7e-18 Score=158.72 Aligned_cols=122 Identities=18% Similarity=0.221 Sum_probs=100.8
Q ss_pred cHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhh
Q 003018 334 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 413 (856)
Q Consensus 334 ~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~ 413 (856)
+|.+.+++++..+ ..+++.+.+.++...+.....++..|.+|+.||++||+||++.|.|.|.+...
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~---------- 67 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANATSLAINVSVE---------- 67 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEE----------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEeC----------
Confidence 5677777777766 56677777777655444444568899999999999999999988887776431
Q ss_pred hhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCC
Q 003018 414 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 493 (856)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~ 493 (856)
.. +.|+|+|+|+||+++.
T Consensus 68 -------------------------------------------~~-~~i~v~D~G~gi~~~~------------------ 85 (124)
T 3zxq_A 68 -------------------------------------------DD-VRVEVVDDGVGISGDI------------------ 85 (124)
T ss_dssp -------------------------------------------EE-EEEEEEECCCSSCGGG------------------
T ss_pred -------------------------------------------CC-EEEEEEECCCCCCccc------------------
Confidence 12 6799999999999875
Q ss_pred CCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 003018 494 HGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 534 (856)
Q Consensus 494 ~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 534 (856)
+||||+|||++++.|||++.+.|.+++|++|++++|+.
T Consensus 86 ---~GlGL~~~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 123 (124)
T 3zxq_A 86 ---TESGLRNLRQRADDAGGEFTVENMPTGGTLLRWSAPLR 123 (124)
T ss_dssp ---SHHHHHHHHHHHHHHTCEEEEEECTTSSEEEEEEEECC
T ss_pred ---cccCHHHHHHHHHHhCCEEEEEEcCCCcEEEEEEEecC
Confidence 39999999999999999999999999999999999973
No 44
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.77 E-value=4.2e-18 Score=161.05 Aligned_cols=122 Identities=21% Similarity=0.285 Sum_probs=110.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
..+||||||++..+..++.+|++.|+.|..+.++.+|+..+.....||+||+|+.||+++|++++++||+..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~-------- 78 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASE-------- 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTST--------
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcC--------
Confidence 368999999999999999999999999999999999999885444499999999999999999999999731
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|+++....
T Consensus 79 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 79 -------------RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp -------------TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred -------------CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 34689999999999999999999999999999999999999999987654
No 45
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.77 E-value=1.6e-18 Score=161.84 Aligned_cols=121 Identities=19% Similarity=0.248 Sum_probs=107.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..++.+|++.|+.|.++.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~D~~l~~~~g~~~~~~l~~~~--------- 73 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMS-TRGYDAVFIDLNLPDTSGLALVKQLRALP--------- 73 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHH-HSCCSEEEEESBCSSSBHHHHHHHHHHSC---------
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhh---------
Confidence 58999999999999999999999999999999999999985 46799999999999999999999999742
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~~ 852 (856)
..+++|||++|+....+. .+++..|+++|+.||++.++|.+.++++.....
T Consensus 74 -----------~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 74 -----------MEKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp -----------CSSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC----
T ss_pred -----------ccCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccCC
Confidence 145799999999999888 899999999999999999999999999877544
No 46
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.77 E-value=4.2e-18 Score=157.24 Aligned_cols=116 Identities=26% Similarity=0.389 Sum_probs=106.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~-v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
.+||||||++..+..++..|+..|+. +..+.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~-~~~~dlil~D~~l~~~~g~~~~~~l~~~--------- 72 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYK-ELKPDIVTMDITMPEMNGIDAIKEIMKI--------- 72 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HHCCSEEEEECSCGGGCHHHHHHHHHHH---------
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCcHHHHHHHHHhh---------
Confidence 58999999999999999999999999 568999999999885 4579999999999999999999999974
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|...+++.+
T Consensus 73 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 73 -------------DPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp -------------CTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred -------------CCCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 24689999999999999999999999999999999999999998764
No 47
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.77 E-value=3.8e-18 Score=160.91 Aligned_cols=116 Identities=21% Similarity=0.318 Sum_probs=107.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+|||++++++||+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~---------- 72 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIE-NEFFNLALFXIKLPDMEGTELLEKAHKL---------- 72 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEECSBCSSSBHHHHHHHHHHH----------
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCchHHHHHHHHhh----------
Confidence 48999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+
T Consensus 73 ------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 119 (132)
T 3crn_A 73 ------------RPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKL 119 (132)
T ss_dssp ------------CTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------CCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999998764
No 48
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.77 E-value=1.4e-18 Score=164.70 Aligned_cols=117 Identities=15% Similarity=0.287 Sum_probs=109.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC--CCHHHHHHHHHhhcccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE--MDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~--mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+||||||++..+..++.+|++.||.|.++.++.+|++.+. ...||+||+|+.||+ ++|++++++||+.
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~-------- 77 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQI-SDDAIGMIIEAHLEDKKDSGIELLETLVKR-------- 77 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCC-CTTEEEEEEETTGGGBTTHHHHHHHHHHHT--------
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-ccCCCEEEEeCcCCCCCccHHHHHHHHHhC--------
Confidence 58999999999999999999999999999999999999885 567999999999999 9999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+++|||++|+....+...+|+++|+++||.||++.++|..+|.+.+.
T Consensus 78 --------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 125 (136)
T 3kto_A 78 --------------GFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIIN 125 (136)
T ss_dssp --------------TCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHH
T ss_pred --------------CCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHh
Confidence 347899999999999999999999999999999999999999988764
No 49
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.76 E-value=6.4e-18 Score=156.08 Aligned_cols=116 Identities=28% Similarity=0.426 Sum_probs=107.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+||||||++..+..+...|+..|+.|..+.++.+|++.+. .+.||+||+|++||++||++++++||+.
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~-~~~~dlil~D~~l~~~~g~~~~~~l~~~----------- 69 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN-EHIPDIAIVDLGLPDEDGLSLIRRWRSN----------- 69 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEECSCCSSSCHHHHHHHHHHT-----------
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHh-ccCCCEEEEecCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999885 4679999999999999999999999963
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|...+++.+.
T Consensus 70 -----------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 70 -----------DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp -----------TCCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred -----------CCCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHH
Confidence 246899999999999999999999999999999999999999987653
No 50
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.76 E-value=7.3e-18 Score=162.88 Aligned_cols=118 Identities=19% Similarity=0.451 Sum_probs=107.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHhC--------CCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLM--------PPHQFDACFMDIQMPEMDGFEATKIIREM 779 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~--~v~~a~~g~eA~~~l~--------~~~~~DlilmDi~MP~mdG~e~~~~IR~~ 779 (856)
.+||||||++..+..++.+|++.|+ .|.++.++.+|++.+. ....||+||+|+.||++||++++++||+.
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~ 84 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKEN 84 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 5899999999999999999999998 8999999999999883 24679999999999999999999999973
Q ss_pred cccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhh
Q 003018 780 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847 (856)
Q Consensus 780 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 847 (856)
. ..+++|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 85 ~--------------------~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 132 (152)
T 3heb_A 85 P--------------------HTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQL 132 (152)
T ss_dssp T--------------------TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred c--------------------cccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHH
Confidence 1 24578999999999999999999999999999999999999888764
No 51
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.76 E-value=1.1e-17 Score=156.37 Aligned_cols=118 Identities=31% Similarity=0.456 Sum_probs=107.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~-~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
.+||||||++..+..++..|+..|+ .|..+.++.+|++.+. ...||+||+|+.||++||++++++||+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~l~~~l~~~~-------- 75 (128)
T 1jbe_A 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISDWNMPNMDGLELLKTIRAXX-------- 75 (128)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHT-TCCCCEEEEESCCSSSCHHHHHHHHHC----------
T ss_pred cEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhc--------
Confidence 4799999999999999999999999 7999999999999985 46799999999999999999999999632
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+
T Consensus 76 ------------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~ 123 (128)
T 1jbe_A 76 ------------AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp ------------CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------ccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHH
Confidence 134789999999999999999999999999999999999999998764
No 52
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.76 E-value=1.1e-18 Score=165.10 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=109.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcC-CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g-~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
..+||||||++..+..++.+|++.| |.|.++.++.+|++.+. .+.||+||+|+.||+++|++++++||+..
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~------- 85 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPA-DTRPGIVILDLGGGDLLGKPGIVEARALW------- 85 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCT-TCCCSEEEEEEETTGGGGSTTHHHHHGGG-------
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHh-ccCCCEEEEeCCCCCchHHHHHHHHHhhC-------
Confidence 3589999999999999999999999 99999999999999884 57899999999999999999999999742
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
+++|||++|+....+...+++++|+++|+.||++.++|..+|.+++..
T Consensus 86 ---------------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 86 ---------------ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp ---------------TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred ---------------CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 368999999999999999999999999999999999999999998764
No 53
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.76 E-value=9.3e-18 Score=155.37 Aligned_cols=115 Identities=26% Similarity=0.401 Sum_probs=106.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..++..|+..|+.|..+.++.+|++.+. .+.||+||+|+.||+++|+++++.||+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~l~~~~g~~~~~~l~~----------- 70 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ-NQSVDLILLDINLPDENGLMLTRALRE----------- 70 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHT-----------
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHh-cCCCCEEEEeCCCCCCChHHHHHHHHh-----------
Confidence 47999999999999999999999999999999999999885 457999999999999999999999996
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|...|++.+
T Consensus 71 ------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 117 (122)
T 1zgz_A 71 ------------RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 (122)
T ss_dssp ------------TCCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------cCCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHH
Confidence 13589999999999999999999999999999999999999998764
No 54
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.76 E-value=1.5e-17 Score=160.35 Aligned_cols=118 Identities=18% Similarity=0.322 Sum_probs=105.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHhCC------CCCccEEEEeCCCCCCCHHHHHHHHHhhcc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMP------PHQFDACFMDIQMPEMDGFEATKIIREMEH 781 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~--~v~~a~~g~eA~~~l~~------~~~~DlilmDi~MP~mdG~e~~~~IR~~~~ 781 (856)
.+||||||++..+..++.+|+..|+ .|..+.+|.+|++.+.. ...||+||+|+.||+|||++++++||+..
T Consensus 9 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~- 87 (149)
T 1i3c_A 9 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP- 87 (149)
T ss_dssp EEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT-
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCc-
Confidence 4799999999999999999999887 89999999999999853 14699999999999999999999999731
Q ss_pred cccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhh
Q 003018 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847 (856)
Q Consensus 782 ~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 847 (856)
..+++|||++|+....+...+++++|+++||.||++.++|..+|++.
T Consensus 88 -------------------~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 134 (149)
T 1i3c_A 88 -------------------DLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGI 134 (149)
T ss_dssp -------------------TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred -------------------CcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 12478999999999999999999999999999999999999888753
No 55
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.75 E-value=6.2e-18 Score=155.79 Aligned_cols=116 Identities=34% Similarity=0.491 Sum_probs=106.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
++||||||++..+..++..|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~---------- 70 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFE-AEQPDIIILDLMLPEIDGLEVAKTIRKT---------- 70 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHHHHH----------
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHH-hCCCCEEEEeccCCCCCHHHHHHHHHhC----------
Confidence 37999999999999999999999999999999999999885 4579999999999999999999999962
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
+++|||++|+........+++++|+++|+.||++.++|...+++.+.
T Consensus 71 -------------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 71 -------------SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp -------------CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred -------------CCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 25899999999999999999999999999999999999999987653
No 56
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.75 E-value=1.7e-17 Score=157.04 Aligned_cols=125 Identities=23% Similarity=0.419 Sum_probs=107.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 708 ~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ... |+||+|+.||++||++++++||+..+.
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~-dlvllD~~lp~~~g~~~~~~l~~~~~~----- 78 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS-HEH-KVVFMDVCMPGVENYQIALRIHEKFTK----- 78 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC-TTC-SEEEEECCSSTTTTTHHHHHHHHHHC------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-ccC-CEEEEeCCCCCCcHHHHHHHHHHhhhh-----
Confidence 4578999999999999999999999999999999999999885 344 999999999999999999999852110
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
.....+|||++|+....+...+|+++|+++||.||++.++|..+|++.+...
T Consensus 79 ------------~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 79 ------------QRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp ------------CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred ------------ccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 0012246889999999999999999999999999999999999999887543
No 57
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.75 E-value=9.1e-18 Score=160.33 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=111.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHhCC----CCCccEEEEeCCCCCCCHHHHHHHHHhhccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMP----PHQFDACFMDIQMPEMDGFEATKIIREMEHN 782 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~--~v~~a~~g~eA~~~l~~----~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~ 782 (856)
..+||||||++..+..+..+|+..|+ .|.++.++.+|++.+.. ...||+||+|+.||++||++++++||+....
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 88 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQP 88 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGG
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhh
Confidence 35899999999999999999999999 99999999999998842 1679999999999999999999999974210
Q ss_pred ccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcC-CCeEEeCCCCHHHHHHHHhhhCCCCCC
Q 003018 783 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG-MDGYVSKPFEAEQLYREVSRFFPPIPD 853 (856)
Q Consensus 783 ~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG-~d~yl~KP~~~~~L~~~l~~~~~~~~~ 853 (856)
..+++|||++|+....+...+++++| +++||.||++.++|..+|++++.....
T Consensus 89 ------------------~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~~ 142 (146)
T 3ilh_A 89 ------------------MKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGHH 142 (146)
T ss_dssp ------------------GTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC---
T ss_pred ------------------ccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhccC
Confidence 13578999999999999999999999 999999999999999999998876543
No 58
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.75 E-value=9e-18 Score=162.56 Aligned_cols=117 Identities=21% Similarity=0.290 Sum_probs=109.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
..+||||||++..+..+..+|++.||.|.++.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~--------- 83 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLA-SREVDLVISAAHLPQMDGPTLLARIHQQ--------- 83 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHH---------
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHH-cCCCCEEEEeCCCCcCcHHHHHHHHHhH---------
Confidence 468999999999999999999999999999999999999985 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcC-CCeEEeCCCCHHHHHHHHhhhC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG-MDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG-~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+++|||++|+....+...+++++| +++||.||++.++|..+|.+.+
T Consensus 84 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l 131 (153)
T 3hv2_A 84 -------------YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQAL 131 (153)
T ss_dssp -------------CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHH
T ss_pred -------------CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999999 9999999999999999998765
No 59
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.75 E-value=2.1e-18 Score=165.42 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=110.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcC-CEEEEEcCHHHHHHHhCCC-CCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMPP-HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g-~~v~~a~~g~eA~~~l~~~-~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 786 (856)
+.+||||||++..+..+..+|+..| |.|..+.++.+|+..+... ..||+||+|+.||++||++++++||+.
T Consensus 20 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~------- 92 (146)
T 4dad_A 20 MINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRL------- 92 (146)
T ss_dssp GCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHH-------
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHh-------
Confidence 4699999999999999999999999 9999999999998876433 679999999999999999999999974
Q ss_pred ccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
.+.+|||++|+....+...+|+++|+++||.||++.++|..+|.+.+...
T Consensus 93 ---------------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 93 ---------------HPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp ---------------CTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred ---------------CCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 34689999999999999999999999999999999999999999887654
No 60
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.75 E-value=1.1e-17 Score=155.03 Aligned_cols=115 Identities=23% Similarity=0.364 Sum_probs=106.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..++..|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~---------- 72 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLPGKNGLLLARELREQ---------- 72 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HSCCSEEEECSSCSSSCHHHHHHHHHHH----------
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHhC----------
Confidence 48999999999999999999999999999999999999885 4679999999999999999999999972
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
+++|||++|+........+++++|+++|+.||++.++|...+++.+
T Consensus 73 -------------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 118 (123)
T 1xhf_A 73 -------------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 (123)
T ss_dssp -------------CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 2589999999999999999999999999999999999999988754
No 61
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.75 E-value=8.2e-18 Score=158.89 Aligned_cols=118 Identities=28% Similarity=0.454 Sum_probs=108.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
++||||||++..+..+...|...|+.|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~---------- 72 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAE-TEKPDLIVLDVMLPKLDGIEVCKQLRQQ---------- 72 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHHHHT----------
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh-hcCCCEEEEecCCCCCCHHHHHHHHHcC----------
Confidence 58999999999999999999999999999999999999884 4579999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+.+|||++|+........+++++|+++|+.||++.++|...|.+.+..
T Consensus 73 ------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 73 ------------KLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp ------------TCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred ------------CCCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 2468999999999988899999999999999999999999999887643
No 62
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.75 E-value=7.7e-18 Score=177.43 Aligned_cols=118 Identities=28% Similarity=0.406 Sum_probs=109.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+. .+.||+||+|++||+|||++++++||+.
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvllD~~lp~~~g~~~~~~lr~~--------- 92 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAR-ETRPDAVILDVXMPGMDGFGVLRRLRAD--------- 92 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHHT---------
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 468999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+++|||++|+....+...+|+++|++|||.||++.++|..+|++.+.
T Consensus 93 -------------~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 93 -------------GIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR 140 (250)
T ss_dssp -------------TCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHH
T ss_pred -------------CCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999987653
No 63
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.75 E-value=3.8e-18 Score=162.62 Aligned_cols=117 Identities=30% Similarity=0.375 Sum_probs=107.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC-CCHHHHHHHHHhhcccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-MDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~-mdG~e~~~~IR~~~~~~~~~~ 787 (856)
+.+||||||++..+..++.+|++.|+.|.++.++.+|++.+.....||+||+|+.||. ++|++++++||+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~-------- 76 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI-------- 76 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH--------
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC--------
Confidence 4689999999999999999999999999999999999999854367999999999995 9999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
+++|||++|+....+...+++++|+++||.||++.++|..+|.+.+
T Consensus 77 ---------------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 122 (140)
T 3h5i_A 77 ---------------SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMAL 122 (140)
T ss_dssp ---------------CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred ---------------CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 3689999999999988999999999999999999999999998765
No 64
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.75 E-value=2.4e-18 Score=191.67 Aligned_cols=117 Identities=21% Similarity=0.317 Sum_probs=108.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
++||||||++.++..++.+|++.||.|..+.+|.+|++.+. .+.||+||+|++||+|||++++++||+.
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-~~~~DlvllDi~mP~~dG~ell~~lr~~---------- 69 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIK-ELFFPVIVLDVWMPDGDGVNFIDFIKEN---------- 69 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HBCCSEEEEESEETTEETTTHHHHHHHH----------
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 37999999999999999999999999999999999999985 4679999999999999999999999974
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+++|||++|+..+.+...+|+++|++|||.||++.++|..+|.+.+.
T Consensus 70 ------------~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 117 (368)
T 3dzd_A 70 ------------SPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFE 117 (368)
T ss_dssp ------------CTTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred ------------CCCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999987653
No 65
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.75 E-value=1e-17 Score=158.13 Aligned_cols=118 Identities=21% Similarity=0.343 Sum_probs=106.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcC--CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g--~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+||||||++..+..++.+|+..| +.|..+.++.+|++.+. ...||+||+|+.||+|||++++++||+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~-~~~~dlvilD~~lp~~~g~~~~~~l~~~-------- 74 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIE-EYNPNVVILDIEMPGMTGLEVLAEIRKK-------- 74 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHHHHT--------
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHh-hcCCCEEEEecCCCCCCHHHHHHHHHHH--------
Confidence 379999999999999999999887 66788999999999885 4579999999999999999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+..
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 75 --------------HLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNG 123 (133)
T ss_dssp --------------TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC-
T ss_pred --------------CCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 3478999999999999999999999999999999999999999887653
No 66
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.75 E-value=5.1e-18 Score=159.92 Aligned_cols=120 Identities=16% Similarity=0.273 Sum_probs=107.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
.+||||||++..+..++.+|++.|+.+. ++.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~-~~~~dlii~d~~l~~~~g~~~~~~l~~~--------- 71 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE-TLKPDIVIIDVDIPGVNGIQVLETLRKR--------- 71 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHH-HHCCSEEEEETTCSSSCHHHHHHHHHHT---------
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHH-hcCCCEEEEecCCCCCChHHHHHHHHhc---------
Confidence 3799999999999999999999999998 8999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~~ 852 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+....
T Consensus 72 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 72 -------------QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp -------------TCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred -------------CCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 347899999999999999999999999999999999999999998776543
No 67
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.75 E-value=1.6e-17 Score=160.24 Aligned_cols=120 Identities=21% Similarity=0.342 Sum_probs=111.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcC--CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g--~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+||||||++..+..+..+|+..| +.|.++.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-~~~~dlii~D~~l~~~~g~~~~~~l~~~-------- 91 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLE-KESVDIAILDVEMPVKTGLEVLEWIRSE-------- 91 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHT-TSCCSEEEECSSCSSSCHHHHHHHHHHT--------
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhh-ccCCCEEEEeCCCCCCcHHHHHHHHHHh--------
Confidence 589999999999999999999988 78999999999999985 5679999999999999999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~~ 852 (856)
.+++|||++|+....+...+++++|+++||.||++.++|..+|.+.+....
T Consensus 92 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 92 --------------KLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp --------------TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred --------------CCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 347899999999999999999999999999999999999999999876543
No 68
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.74 E-value=8.1e-18 Score=157.40 Aligned_cols=119 Identities=21% Similarity=0.378 Sum_probs=108.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~-~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
.+||||||++..+..++..|+..|+ .|..+.++.+|++.+. ...||+||+|+.||++||++++++||+..
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~~-------- 77 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMA-QNPHHLVISDFNMPKMDGLGLLQAVRANP-------- 77 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHH-TSCCSEEEECSSSCSSCHHHHHHHHTTCT--------
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHH-cCCCCEEEEeCCCCCCCHHHHHHHHhcCc--------
Confidence 5799999999999999999999999 8999999999999885 46799999999999999999999999631
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+.
T Consensus 78 ------------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 78 ------------ATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp ------------TSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred ------------cccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 1347899999999999999999999999999999999999999987653
No 69
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.74 E-value=1.5e-17 Score=161.95 Aligned_cols=118 Identities=23% Similarity=0.391 Sum_probs=109.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhCCCC--CccEEEEeCCCCCCCHHHHHHHHHhhcccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPH--QFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eA~~~l~~~~--~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~ 785 (856)
..+||||||++..+..+..+|++.|+.+. ++.++.+|++.+. .. .||+||+|++||+++|++++++||+.
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~-~~~~~~dliilD~~l~~~~g~~~~~~lr~~------ 108 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYK-NHYPNIDIVTLXITMPKMDGITCLSNIMEF------ 108 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HHGGGCCEEEECSSCSSSCHHHHHHHHHHH------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH-hcCCCCCEEEEeccCCCccHHHHHHHHHhh------
Confidence 35899999999999999999999999998 9999999999885 34 68999999999999999999999974
Q ss_pred cccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 786 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 786 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+.+|||++|+....+...+|+++|+++||.||++.++|..+|.+.+.
T Consensus 109 ----------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 109 ----------------DKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp ----------------CTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred ----------------CCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 246899999999999999999999999999999999999999998875
No 70
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.74 E-value=1.2e-17 Score=158.56 Aligned_cols=115 Identities=28% Similarity=0.412 Sum_probs=106.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 5 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvllD~~l~~~~g~~l~~~l~~~---------- 73 (136)
T 2qzj_A 5 TKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIF-SNKYDLIFLEIILSDGDGWTLCKKIRNV---------- 73 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HCCCSEEEEESEETTEEHHHHHHHHHTT----------
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHccC----------
Confidence 58999999999999999999999999999999999999885 4679999999999999999999999962
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
..+|||++|+....+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 74 -------------~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~ 119 (136)
T 2qzj_A 74 -------------TTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAIL 119 (136)
T ss_dssp -------------CCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 1589999999999999999999999999999999999999988764
No 71
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=9.1e-18 Score=159.55 Aligned_cols=116 Identities=18% Similarity=0.323 Sum_probs=107.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvllD~~l~~~~g~~l~~~l~~~---------- 73 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIE-RSKPQLIILDLKLPDMSGEDVLDWINQN---------- 73 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHH-HHCCSEEEECSBCSSSBHHHHHHHHHHT----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHH-hcCCCEEEEecCCCCCCHHHHHHHHHhc----------
Confidence 37999999999999999999999999999999999999885 4579999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+++|||++|+....+...+++++|+++||.||++.++|..+|.+.+
T Consensus 74 ------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 120 (137)
T 3cfy_A 74 ------------DIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHL 120 (137)
T ss_dssp ------------TCCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999997654
No 72
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.74 E-value=2e-17 Score=158.14 Aligned_cols=119 Identities=25% Similarity=0.483 Sum_probs=108.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCE--EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~--v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 786 (856)
..+||||||++..+..++.+|+..|+. |.++.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-~~~~dlii~D~~l~~~~g~~~~~~lr~~~------ 77 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQ-QAKYDLIILDIGLPIANGFEVMSAVRKPG------ 77 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHT-TCCCSEEEECTTCGGGCHHHHHHHHHSSS------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhh-cCCCCEEEEeCCCCCCCHHHHHHHHHhcc------
Confidence 458999999999999999999999987 899999999999995 56799999999999999999999999731
Q ss_pred ccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCC-CHHHHHHHHhhhC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVSRFF 848 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~-~~~~L~~~l~~~~ 848 (856)
..+.+|||++|+....+...+|+++|+++|+.||+ +.++|..+|.+.+
T Consensus 78 --------------~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l 126 (144)
T 3kht_A 78 --------------ANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIF 126 (144)
T ss_dssp --------------TTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHH
T ss_pred --------------cccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 24579999999999999999999999999999999 9999998887654
No 73
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.74 E-value=5.6e-18 Score=161.05 Aligned_cols=120 Identities=18% Similarity=0.301 Sum_probs=108.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
..+||||||++..+..++.+|++.|+.|.++.++.+|++.+. ...||+||+|+.||++||++++++||+..
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~~-------- 76 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVA-RRPYAAMTVDLNLPDQDGVSLIRALRRDS-------- 76 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH-HSCCSEEEECSCCSSSCHHHHHHHHHTSG--------
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhCc--------
Confidence 368999999999999999999999999999999999999985 46799999999999999999999999732
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHH-HHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYE-ECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~-~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
..+++|||++|+....+... +++++|+++|+.||++.++|..+|.+.+.
T Consensus 77 ------------~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 77 ------------RTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp ------------GGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred ------------ccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 13578999999988887777 89999999999999999999999987654
No 74
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.74 E-value=3.2e-17 Score=155.02 Aligned_cols=120 Identities=20% Similarity=0.347 Sum_probs=108.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHhCCC------CCccEEEEeCCCCCCCHHHHHHHHHhhc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMPP------HQFDACFMDIQMPEMDGFEATKIIREME 780 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~--~v~~a~~g~eA~~~l~~~------~~~DlilmDi~MP~mdG~e~~~~IR~~~ 780 (856)
+++||||||++..+..+..+|+..|+ .|..+.++.+|++.+... ..||+||+|+.||+++|++++++||+..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 46899999999999999999999998 999999999999998641 6799999999999999999999999732
Q ss_pred ccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 781 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|++++
T Consensus 82 --------------------~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 129 (140)
T 1k68_A 82 --------------------TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIE 129 (140)
T ss_dssp --------------------TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred --------------------ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHH
Confidence 124689999999999999999999999999999999999998887654
No 75
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.74 E-value=2.1e-17 Score=157.02 Aligned_cols=120 Identities=27% Similarity=0.390 Sum_probs=105.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||++++++||+..
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--------- 73 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALN-ATPPDLVLLDIMMEPMDGWETLERIKTDP--------- 73 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHST---------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHcCc---------
Confidence 48999999999999999999999999999999999999885 45799999999999999999999999731
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
..+++|||++|+.........+..+|+++||.||++.++|..+|.+.+..
T Consensus 74 -----------~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 74 -----------ATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp -----------TTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred -----------ccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 13478999999987766666677778899999999999999999887643
No 76
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.73 E-value=2.7e-17 Score=156.85 Aligned_cols=117 Identities=20% Similarity=0.343 Sum_probs=108.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCC-CCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP-PHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~-~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
.+||||||++..+..++.+|+..|+.|.++.++.+|++.+.. ...||+||+|+.||+++|++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~--------- 74 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKI--------- 74 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHH---------
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHh---------
Confidence 589999999999999999999999999999999999998852 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+++|||++|+....+...+++++|+++||.||++.++|..+|.+.+
T Consensus 75 -------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 121 (143)
T 3jte_A 75 -------------TPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAI 121 (143)
T ss_dssp -------------CTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999998754
No 77
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.73 E-value=1.5e-17 Score=157.49 Aligned_cols=118 Identities=21% Similarity=0.291 Sum_probs=109.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
..+||||||++..+..++.+|++.|+.|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~--------- 76 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFG-LHAPDVIITDIRMPKLGGLEMLDRIKAG--------- 76 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHHHHT---------
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 358999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|++++.
T Consensus 77 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 77 -------------GAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp -------------TCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHH
T ss_pred -------------CCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999998764
No 78
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.73 E-value=1.9e-17 Score=168.92 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=108.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
+.+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+|||++++++||+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~lp~~~g~~~~~~l~~~--------- 73 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRR-PEQHGCLVLDMRMPGMSGIELQEQLTAI--------- 73 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCC-TTSCEEEEEESCCSSSCHHHHHHHHHHT---------
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhh-ccCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 358999999999999999999999999999999999999885 5679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+++|||++|+....+...+++++|++||+.||++.++|..+|.+.+
T Consensus 74 -------------~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~ 120 (208)
T 1yio_A 74 -------------SDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGL 120 (208)
T ss_dssp -------------TCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999987754
No 79
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.73 E-value=1.5e-17 Score=152.44 Aligned_cols=114 Identities=25% Similarity=0.413 Sum_probs=103.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..++..|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~---------- 70 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFF-SGNYDLVILDIEMPGISGLEVAGEIRKK---------- 70 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEECSCCSSSCHHHHHHHHHHH----------
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHcc----------
Confidence 37999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+++|||++|+..... .+++++|+++|+.||++.++|..++++.+
T Consensus 71 ------------~~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 71 ------------KKDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ------------CTTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ------------CCCCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 2468999999886654 67889999999999999999999998765
No 80
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.73 E-value=2e-17 Score=155.56 Aligned_cols=118 Identities=18% Similarity=0.248 Sum_probs=102.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
..+||||||++..+..++.+|+ .|+.|.++.++.+|++.+. ...||+||+|+.||++||++++++||+..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~~-------- 73 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQAL-AHPPDVLISDVNMDGMDGYALCGHFRSEP-------- 73 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHH-HSCCSEEEECSSCSSSCHHHHHHHHHHST--------
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhCC--------
Confidence 3589999999999999999999 8999999999999999885 46799999999999999999999999732
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
..+++|||++|+....+. .+++++|+++|+.||++.++|..+|++.+.
T Consensus 74 ------------~~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 74 ------------TLKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLA 121 (133)
T ss_dssp ------------TTTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ------------ccCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHh
Confidence 235799999999988777 899999999999999999999999988764
No 81
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.73 E-value=3.7e-17 Score=153.55 Aligned_cols=121 Identities=22% Similarity=0.345 Sum_probs=104.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
+.+||||||++..+..++.+|++.|+.|.++.++.+|++.+. ...||+||+|+.||+++|++++++||+...
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~~------- 77 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLS-TFEPAIMTLDLSMPKLDGLDVIRSLRQNKV------- 77 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HTCCSEEEEESCBTTBCHHHHHHHHHTTTC-------
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH-hcCCCEEEEecCCCCCCHHHHHHHHHhcCc-------
Confidence 468999999999999999999999999999999999999885 467999999999999999999999997321
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
...+|||++|+.... ...+++++|+++|+.||++.++|..+|++.....
T Consensus 78 -------------~~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 78 -------------ANQPKILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp -------------SSCCEEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred -------------cCCCeEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 134566666665555 7889999999999999999999999999887643
No 82
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.73 E-value=2.6e-17 Score=158.96 Aligned_cols=121 Identities=21% Similarity=0.299 Sum_probs=109.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhhcCCE--EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccc
Q 003018 708 LGRKILIVDDNNVNLKVAAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785 (856)
Q Consensus 708 ~~~~ILvVdDn~~n~~~l~~~L~~~g~~--v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~ 785 (856)
.+.+||||||++..+..++.+|++.|+. |.++.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~------ 86 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIK-AHLPDVALLDYRMPGMDGAQVAAAVRSY------ 86 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHH-HHCCSEEEEETTCSSSCHHHHHHHHHHT------
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhc------
Confidence 3568999999999999999999999954 568999999999885 4679999999999999999999999973
Q ss_pred cccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 786 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 786 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|.+.+...
T Consensus 87 ----------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 87 ----------------ELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGR 136 (152)
T ss_dssp ----------------TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC
T ss_pred ----------------CCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 34689999999999999999999999999999999999999999876543
No 83
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.73 E-value=1.1e-17 Score=156.01 Aligned_cols=120 Identities=22% Similarity=0.292 Sum_probs=108.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..++..|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--------- 72 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWPDLILLAWMLPGGSGIQFIKHLRRES--------- 72 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCS-SSCCSEEEEESEETTEEHHHHHHHHHTST---------
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh-ccCCCEEEEecCCCCCCHHHHHHHHHhCc---------
Confidence 48999999999999999999999999999999999999885 46799999999999999999999999631
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+..
T Consensus 73 -----------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 73 -----------MTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp -----------TTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred -----------ccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 12578999999999888899999999999999999999999999887643
No 84
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.72 E-value=3.6e-17 Score=155.81 Aligned_cols=118 Identities=19% Similarity=0.355 Sum_probs=109.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
..+||||||++..+..++.+|++.|+.|..+.++.+|++.+. ...||+||+|+ ||+++|+++++.||+.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~-~~~~~g~~~~~~l~~~--------- 72 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR-REKIDLVFVDV-FEGEESLNLIRRIREE--------- 72 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHT-TSCCSEEEEEC-TTTHHHHHHHHHHHHH---------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh-ccCCCEEEEeC-CCCCcHHHHHHHHHHH---------
Confidence 358999999999999999999999999999999999999995 46799999999 9999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+..
T Consensus 73 -------------~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 73 -------------FPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp -------------CTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred -------------CCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 2468999999999999999999999999999999999999999987654
No 85
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.72 E-value=2.5e-17 Score=151.87 Aligned_cols=115 Identities=23% Similarity=0.353 Sum_probs=105.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+||||||++..+..++..|+..|+.+..+.++.+|+..+. ...||+||+|+.||++||++++++||+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~------------ 69 (121)
T 1zh2_A 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-TRKPDLIILDLGLPDGDGIEFIRDLRQ------------ 69 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HHCCSEEEEESEETTEEHHHHHHHHHT------------
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHHHh------------
Confidence 7999999999999999999999999999999999998874 457999999999999999999999984
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|..++++.+.
T Consensus 70 -----------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 70 -----------WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (121)
T ss_dssp -----------TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred -----------CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHH
Confidence 235899999999999999999999999999999999999999987643
No 86
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.72 E-value=2.2e-17 Score=174.06 Aligned_cols=119 Identities=23% Similarity=0.344 Sum_probs=110.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
..+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+|||++++++||+
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~DlvllD~~lp~~~G~~l~~~lr~---------- 105 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAR-EDHPDLILLDLGLPDFDGGDVVQRLRK---------- 105 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HSCCSEEEEECCSCHHHHHHHHHHHHT----------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHc----------
Confidence 468999999999999999999999999999999999999885 467999999999999999999999996
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
.+.+|||++|+....+...+|+++|++|||.||++.++|..+|.+.+...
T Consensus 106 -------------~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 106 -------------NSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQR 155 (249)
T ss_dssp -------------TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred -------------CCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence 23689999999999999999999999999999999999999999877643
No 87
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.72 E-value=2e-17 Score=155.14 Aligned_cols=119 Identities=21% Similarity=0.334 Sum_probs=106.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~-g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+||||||++..+..++.+|+.. |+.+. .+.++.+|++.+. ...||+||+|+.||+|||++++++||+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~-~~~~dlvllD~~l~~~~g~~~~~~l~~~~------- 74 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLE-EKRPDILLLDIIMPHLDGLAVLERIRAGF------- 74 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHHHC-------
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHHHhcC-------
Confidence 37999999999999999999987 88875 7999999999885 45799999999999999999999999721
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|++.+..
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 75 --------------EHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp --------------SSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred --------------CCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 2357999999999999999999999999999999999999999887644
No 88
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.72 E-value=4.7e-17 Score=157.08 Aligned_cols=117 Identities=22% Similarity=0.325 Sum_probs=106.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
..+||||||++..+..+..+|+. |+.|.++.++.+|++.+.....||+||+|+.||+++|++++++||+.
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~--------- 73 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLI--------- 73 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHH---------
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhc---------
Confidence 36899999999999999999986 99999999999999998544457999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcC-CCeEEeCCCCHHHHHHHHhhhC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG-MDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG-~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+.+|||++|+....+...+++++| +++||.||++.++|..+|.+.+
T Consensus 74 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l 121 (151)
T 3kcn_A 74 -------------SPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGI 121 (151)
T ss_dssp -------------CSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999999 9999999999999999998754
No 89
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.72 E-value=6.7e-17 Score=153.68 Aligned_cols=121 Identities=20% Similarity=0.299 Sum_probs=109.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhh-cCCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKR-YGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~-~g~~-v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 786 (856)
..+||||||++..+..++.+|+. .|+. |..+.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~------ 80 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLH-TVKPDVVMLDLMMVGMDGFSICHRIKSTP------ 80 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHH-HTCCSEEEEETTCTTSCHHHHHHHHHTST------
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHH-hcCCCEEEEecccCCCcHHHHHHHHHhCc------
Confidence 46899999999999999999999 8999 999999999999885 46799999999999999999999999721
Q ss_pred ccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+..
T Consensus 81 --------------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 81 --------------ATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp --------------TTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred --------------cccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 24579999999999999999999999999999999999999999887643
No 90
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.72 E-value=5.9e-17 Score=155.03 Aligned_cols=120 Identities=23% Similarity=0.424 Sum_probs=107.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHhCCC---------CCccEEEEeCCCCCCCHHHHHHHHH
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMPP---------HQFDACFMDIQMPEMDGFEATKIIR 777 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~--~v~~a~~g~eA~~~l~~~---------~~~DlilmDi~MP~mdG~e~~~~IR 777 (856)
+.+||||||++..+..++.+|++.|+ .|..+.++.+|++.+... ..||+||+|+.||+++|++++++||
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 85 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 46899999999999999999999998 899999999999988531 6799999999999999999999999
Q ss_pred hhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 778 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
+.. ..+++|||++|+....+...+++++|+++|+.||++.++|...|.+++
T Consensus 86 ~~~--------------------~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 136 (149)
T 1k66_A 86 QDE--------------------VLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFI 136 (149)
T ss_dssp TST--------------------TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred hCc--------------------ccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 732 124689999999999999999999999999999999999998887654
No 91
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.71 E-value=9.1e-16 Score=176.27 Aligned_cols=257 Identities=19% Similarity=0.204 Sum_probs=182.7
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.++|+||+++..+......|+..|+.|..+.+..+++..+... .++++++|..+...+ ...++..++........
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~---G~~~~~~l~~~~~~~~~ 76 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD--LPDIILLDVMMPGMD---GFTVCRKLKDDPTTRHI 76 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSC---HHHHHHHHHHSTTTTTS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCC---HHHHHHHHhcCcccCCC
Confidence 4799999999999999999999999999999999999887653 478899988765433 23455566654333334
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCC---------CCCCCCCCCCcchhhhcCCCCeE
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN---------KGNIRNWELPSMSLRHLLLGRKI 712 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~I 712 (856)
++++++............ ..+...++.||+....+...+...+.... ...................+.+|
T Consensus 77 pii~lt~~~~~~~~~~a~-~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (459)
T 1w25_A 77 PVVLITALDGRGDRIQGL-ESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRV 155 (459)
T ss_dssp CEEEEECSSCHHHHHHHH-HHTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTTTCCCCCCSSCSCEE
T ss_pred CEEEEECCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHHHHhhhhHhhhhcccccchhhhhhhhhhhcCCCCeE
Confidence 455444332221111111 12566899999999999887765542100 00000000000000011234689
Q ss_pred EEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccccc
Q 003018 713 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 792 (856)
Q Consensus 713 LvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~ 792 (856)
|+|||+..++..+...|.. .+.+....++.++... ....||+++||++||+|||+++++.||....
T Consensus 156 livdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~--~~~~~dlil~D~~mp~~dG~~~~~~ir~~~~----------- 221 (459)
T 1w25_A 156 LIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKIS--AGGPVDLVIVNAAAKNFDGLRFTAALRSEER----------- 221 (459)
T ss_dssp EEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHHH--HHSSCSEEEEETTCSSSCHHHHHHHHHTSGG-----------
T ss_pred EEECCchhhHHHHHHHHhc-ccceeeccCHHHHhhh--ccCCCCEEEEecCCCCCcHHHHHHHHHhCcc-----------
Confidence 9999999999998888875 4677788888888643 2356999999999999999999999997421
Q ss_pred chhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhh
Q 003018 793 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847 (856)
Q Consensus 793 ~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 847 (856)
..++||+++|+....+...+|+++||+||+.||++.+++...+..+
T Consensus 222 ---------~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~ 267 (459)
T 1w25_A 222 ---------TRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQ 267 (459)
T ss_dssp ---------GTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred ---------ccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999888766543
No 92
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.71 E-value=5.3e-17 Score=166.57 Aligned_cols=118 Identities=23% Similarity=0.336 Sum_probs=107.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcC-CEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYG-AAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g-~~v-~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+||||||++..+..++.+|+..| +.+ ..+.++.+|++.+. ...||+||+|+.||+|||++++++||+.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~-~~~~dlvllD~~lp~~~g~~~~~~lr~~-------- 76 (215)
T 1a04_A 6 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-SLDPDLILLDLNMPGMNGLETLDKLREK-------- 76 (215)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH-HHCCSEEEEETTSTTSCHHHHHHHHHHS--------
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCcHHHHHHHHHHh--------
Confidence 489999999999999999999874 887 68999999999885 4579999999999999999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+++|||++|+....+...+++++|++||+.||++.++|..+|.+.+..
T Consensus 77 --------------~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 77 --------------SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp --------------CCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred --------------CCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 3468999999999999999999999999999999999999999877543
No 93
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.71 E-value=1.3e-16 Score=154.30 Aligned_cols=118 Identities=19% Similarity=0.300 Sum_probs=108.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 708 ~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+.+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+.
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~-------- 76 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALK-GTSVQLVISDMRMPEMGGEVFLEQVAKS-------- 76 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHT-TSCCSEEEEESSCSSSCHHHHHHHHHHH--------
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHHHHh--------
Confidence 3568999999999999999999999999999999999999985 4679999999999999999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcC-CCeEEeCCCCHHHHHHHHhhhC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG-MDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG-~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+.+|||++|+....+...+++++| +++|+.||++.++|..+|.+.+
T Consensus 77 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~ 124 (154)
T 2rjn_A 77 --------------YPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGL 124 (154)
T ss_dssp --------------CTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred --------------CCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHH
Confidence 2468999999999999999999998 9999999999999999987654
No 94
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.71 E-value=2.1e-17 Score=190.14 Aligned_cols=118 Identities=20% Similarity=0.289 Sum_probs=96.9
Q ss_pred eEeec-HHHHHHHHHHHHHHHhhcCCCC----eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCcccccc
Q 003018 368 TLIGD-PGRFRQIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 442 (856)
Q Consensus 368 ~v~~D-~~rl~qIl~NLl~NAiKfT~~G----~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (856)
.+.+| +.+|.|||.|||+||+||+..| .|.|.+.....
T Consensus 23 ~i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~------------------------------------- 65 (530)
T 2zbk_B 23 AGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD------------------------------------- 65 (530)
T ss_dssp GTCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEET-------------------------------------
T ss_pred eEEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCC-------------------------------------
Confidence 34445 5999999999999999999775 46666542210
Q ss_pred CCCCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCC-CCCCcccchHHHHHHHHHHcCCE-EEEEEe
Q 003018 443 QDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS-RTHGGTGIGLSISKYLVGRMKGE-IGFVSI 520 (856)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~-~~~~GtGLGLsI~k~lv~~mgG~-I~v~S~ 520 (856)
+...+.|+|+|||+||+++.++++|+||++.+.... +..+|+||||+||+.++++|||+ |++.|.
T Consensus 66 -------------~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~ 132 (530)
T 2zbk_B 66 -------------ARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETS 132 (530)
T ss_dssp -------------TTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEE
T ss_pred -------------cCceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEe
Confidence 012478999999999999999999999988765433 45689999999999999999999 999999
Q ss_pred CCCce-EEEEEEEeCC
Q 003018 521 PNIGS-TFTFTAVFGN 535 (856)
Q Consensus 521 ~g~Gs-tF~~~lp~~~ 535 (856)
++.|+ +|+|++|+..
T Consensus 133 ~~~g~~~~~~~Lpl~~ 148 (530)
T 2zbk_B 133 PVNSKRIYTFKLKIDI 148 (530)
T ss_dssp CTTCSEEEEEEEEEET
T ss_pred cCCCeEEEEEEEEecc
Confidence 99987 9999998864
No 95
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.71 E-value=4.3e-17 Score=155.65 Aligned_cols=116 Identities=20% Similarity=0.332 Sum_probs=98.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhh--cCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKR--YGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~--~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 786 (856)
.+||||||++..+..+...|.. .|+.+. .+.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~-~~~~dlvllD~~lp~~~g~~l~~~l~~~------- 74 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIAL-KHPPNVLLTDVRMPRMDGIELVDNILKL------- 74 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHT-TSCCSEEEEESCCSSSCHHHHHHHHHHH-------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhh-------
Confidence 4799999999999999999974 688877 8999999999885 4679999999999999999999999973
Q ss_pred ccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+.+|||++|+....+...+++++|+++||.||++.++|..+|++.+
T Consensus 75 ---------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 121 (141)
T 3cu5_A 75 ---------------YPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSI 121 (141)
T ss_dssp ---------------CTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHH
T ss_pred ---------------CCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHH
Confidence 24689999999998888899999999999999999999999887654
No 96
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.71 E-value=4.7e-17 Score=153.16 Aligned_cols=120 Identities=17% Similarity=0.209 Sum_probs=107.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
..+||||||++..+..++.+|+..++.|.++.++.+|++.+. .. ||+||+|+.||+++|++++++||+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~-~dlvi~D~~l~~~~g~~~~~~l~~~--------- 71 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSL-NK-QDIIILDLMMPDMDGIEVIRHLAEH--------- 71 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCC-CT-TEEEEEECCTTTTHHHHHHHHHHHT---------
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhc-cC-CCEEEEeCCCCCCCHHHHHHHHHhC---------
Confidence 358999999999999999999999999999999999998874 45 9999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCH-----HhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQ-----ATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~-----~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~~ 852 (856)
.+.+|||++|+.... +...+++++|+++|+.||++.++|..+|++.+....
T Consensus 72 -------------~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~ 127 (135)
T 3eqz_A 72 -------------KSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQA 127 (135)
T ss_dssp -------------TCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC-
T ss_pred -------------CCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhcc
Confidence 346899999998875 667779999999999999999999999999887543
No 97
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.70 E-value=1.5e-16 Score=154.07 Aligned_cols=117 Identities=21% Similarity=0.318 Sum_probs=107.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
+.+||||||++..+..+..+|...|+.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dliild~~l~~~~g~~~~~~l~~~--------- 72 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLS-ADFAGIVISDIRMPGMDGLALFRKILAL--------- 72 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCC-TTCCSEEEEESCCSSSCHHHHHHHHHHH---------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhh---------
Confidence 358999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 73 -------------~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 119 (155)
T 1qkk_A 73 -------------DPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAE 119 (155)
T ss_dssp -------------CTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999998764
No 98
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.70 E-value=6e-17 Score=155.25 Aligned_cols=119 Identities=16% Similarity=0.318 Sum_probs=108.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
..+||||||++..+..+...|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+..
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~-------- 78 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAV-KTHPHLIITEANMPKISGMDLFNSLKKNP-------- 78 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHTST--------
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHH-cCCCCEEEEcCCCCCCCHHHHHHHHHcCc--------
Confidence 458999999999999999999999999999999999999885 45799999999999999999999999721
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 79 ------------~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~ 126 (147)
T 2zay_A 79 ------------QTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVL 126 (147)
T ss_dssp ------------TTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------ccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 245799999999999999999999999999999999999999998765
No 99
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.70 E-value=2.5e-17 Score=185.55 Aligned_cols=116 Identities=28% Similarity=0.426 Sum_probs=103.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++.++..++.+|++.||.|.++.+|.+|++.+. .+.||+||+|++||+|||++++++||+.
T Consensus 6 ~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~-~~~~dlvllD~~mp~~~G~~~~~~lr~~---------- 74 (394)
T 3eq2_A 6 ATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFE-SEQPDLVICDLRMPQIDGLELIRRIRQT---------- 74 (394)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHH-HSCCSEEEECCCSSSSCTHHHHHHHHHT----------
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh-hCCCCEEEEcCCCCCCCHHHHHHHHHhh----------
Confidence 48999999999999999999999999999999999999985 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCC-CHHHHHHHHhhhC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVSRFF 848 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~-~~~~L~~~l~~~~ 848 (856)
.+++|||++|+....+...+|+++|++|||.||+ +.+.|..+|.+.+
T Consensus 75 ------------~~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~ 122 (394)
T 3eq2_A 75 ------------ASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 (394)
T ss_dssp ------------TCCCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHH
T ss_pred ------------CCCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHH
Confidence 3479999999999999999999999999999999 6888888777654
No 100
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.70 E-value=5.1e-17 Score=185.04 Aligned_cols=117 Identities=21% Similarity=0.296 Sum_probs=97.2
Q ss_pred EeecHHHHHHHHHHHHHHHhhcCCCC----eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCC
Q 003018 369 LIGDPGRFRQIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 444 (856)
Q Consensus 369 v~~D~~rl~qIl~NLl~NAiKfT~~G----~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (856)
+.+|+.+|.|||.|||+||+||+..| .|.|.+.....
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~--------------------------------------- 66 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD--------------------------------------- 66 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEET---------------------------------------
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCC---------------------------------------
Confidence 45688999999999999999999765 56666543210
Q ss_pred CCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCC-CCCCcccchHHHHHHHHHHcCCE-EEEEEeCC
Q 003018 445 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS-RTHGGTGIGLSISKYLVGRMKGE-IGFVSIPN 522 (856)
Q Consensus 445 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~-~~~~GtGLGLsI~k~lv~~mgG~-I~v~S~~g 522 (856)
+...+.|+|+|+|+||+++.++++|++|++.+...+ +..+|+||||++|+.++++|||+ |.+.|.++
T Consensus 67 -----------~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~ 135 (471)
T 1mu5_A 67 -----------ARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPV 135 (471)
T ss_dssp -----------TTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECT
T ss_pred -----------cCcEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecC
Confidence 012478999999999999999999999988765433 45689999999999999999999 99999999
Q ss_pred Cce-EEEEEEEeCC
Q 003018 523 IGS-TFTFTAVFGN 535 (856)
Q Consensus 523 ~Gs-tF~~~lp~~~ 535 (856)
.|+ +|+|++|+..
T Consensus 136 ~g~~~~~~~Lpl~~ 149 (471)
T 1mu5_A 136 NSKRIYTFKLKIDI 149 (471)
T ss_dssp TCSEEEEEEEEECT
T ss_pred CCceEEEEEEeccc
Confidence 997 9999999864
No 101
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.70 E-value=1.2e-16 Score=154.56 Aligned_cols=121 Identities=26% Similarity=0.317 Sum_probs=110.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhh-cCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~-~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 786 (856)
..+||||||++..+..++.+|++ .|+.+. .+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~-~~~~dlii~D~~l~~~~g~~~~~~l~~~------- 76 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYR-ETTPDIVVMDLTLPGPGGIEATRHIRQW------- 76 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHH-TTCCSEEEECSCCSSSCHHHHHHHHHHH-------
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHHHHh-------
Confidence 35899999999999999999998 799988 8999999999885 4679999999999999999999999974
Q ss_pred ccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCCC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~~ 852 (856)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|.+.+....
T Consensus 77 ---------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 127 (153)
T 3cz5_A 77 ---------------DGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR 127 (153)
T ss_dssp ---------------CTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred ---------------CCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence 246899999999999999999999999999999999999999999876543
No 102
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.70 E-value=1.4e-16 Score=151.06 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=108.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCC-----CCCHHHHHHHHHhhccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP-----EMDGFEATKIIREMEHNFN 784 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP-----~mdG~e~~~~IR~~~~~~~ 784 (856)
.+||||||++..+..++..|++.|+.|..+.++.+|++.+. ...||+||+|+.|| +++|++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~----- 77 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLR-EENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ----- 77 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHH-HSCEEEEEEETTTTC-----CCHHHHHHHHHHH-----
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHH-cCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhh-----
Confidence 58999999999999999999999999999999999999985 46799999999999 99999999999973
Q ss_pred ccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 785 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+..
T Consensus 78 -----------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 78 -----------------YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp -----------------CTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred -----------------CcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 3478999999999999999999999999999999999999999887654
No 103
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.69 E-value=6e-17 Score=165.00 Aligned_cols=115 Identities=29% Similarity=0.389 Sum_probs=105.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
.+||||||++..+..+..+|...||.|. .+.+|.+|++.+. .+.||+||+|+.||+|||+++++.||+.
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~-~~~~dlvi~D~~~p~~~g~~~~~~l~~~--------- 83 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAE-LHKPDLVIMDVKMPRRDGIDAASEIASK--------- 83 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHHHHT---------
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcCCCEEEEeCCCCCCChHHHHHHHHhc---------
Confidence 5899999999999999999999999998 8999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
...|||++|+....+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 84 --------------~~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 129 (205)
T 1s8n_A 84 --------------RIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAV 129 (205)
T ss_dssp --------------TCSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHH
T ss_pred --------------CCCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Confidence 1349999999999999999999999999999999999999887654
No 104
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.69 E-value=6.1e-17 Score=154.10 Aligned_cols=119 Identities=24% Similarity=0.372 Sum_probs=108.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
..+||||||++..+..+..+|+..|+.|..+.++.+|++.+. .+.||+||+|+.||+++|++++++||+..
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~-------- 77 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK-KGFSGVVLLDIMMPGMDGWDTIRAILDNS-------- 77 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-TCCCEEEEEESCCSSSCHHHHHHHHHHTT--------
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhc--------
Confidence 468999999999999999999999999999999999999985 46799999999999999999999999721
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+
T Consensus 78 ------------~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 78 ------------LEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp ------------CCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHH
T ss_pred ------------ccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHH
Confidence 135789999999998888899999999999999999999999998765
No 105
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.69 E-value=3.6e-17 Score=155.54 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=97.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..+..+|+.. +.|.++.++.+|++.+. ...||+||+|+.||++||++++++||+..
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--------- 72 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQID-HHHPDLVILDMDIIGENSPNLCLKLKRSK--------- 72 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHH-HHCCSEEEEETTC------CHHHHHHTST---------
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHHHcCc---------
Confidence 58999999999999999999988 99999999999999885 46799999999999999999999999732
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 73 -----------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 120 (140)
T 3n53_A 73 -----------GLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHL 120 (140)
T ss_dssp -----------TCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHH
T ss_pred -----------ccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHH
Confidence 125789999999999999999999999999999999999999998764
No 106
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.69 E-value=7.1e-17 Score=166.64 Aligned_cols=117 Identities=26% Similarity=0.414 Sum_probs=108.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvllD~~l~~~~g~~~~~~lr~~---------- 71 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMAL-NEPFDVVILDIMLPVHDGWEILKSMRES---------- 71 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHT----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 48999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+.
T Consensus 72 ------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 72 ------------GVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp ------------TCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHh
Confidence 347899999999999999999999999999999999999999987653
No 107
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.69 E-value=2.1e-16 Score=150.48 Aligned_cols=121 Identities=17% Similarity=0.278 Sum_probs=108.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHhCC-----CCCccEEEEeCCCCCCCHHHHHHHHHhhcc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMP-----PHQFDACFMDIQMPEMDGFEATKIIREMEH 781 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~--~v~~a~~g~eA~~~l~~-----~~~~DlilmDi~MP~mdG~e~~~~IR~~~~ 781 (856)
..+||||||++..+..++..|++.|+ .|..+.++.+|++.+.. ...||+||+|+.||+++|++++++||+..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~- 85 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS- 85 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG-
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc-
Confidence 35899999999999999999999998 99999999999998853 25799999999999999999999999732
Q ss_pred cccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 782 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 782 ~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
..+++|||++|+....+...+++++|+++|+.||++.++|..++..+..
T Consensus 86 -------------------~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 86 -------------------SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp -------------------GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred -------------------cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 1247899999999999999999999999999999999999999877653
No 108
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.69 E-value=1.7e-16 Score=150.76 Aligned_cols=115 Identities=21% Similarity=0.273 Sum_probs=103.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..++.+|+.. +.|..+.++.+|++.+. .+.||+||+|+.||+|||++++++||+.
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~lp~~~g~~~~~~l~~~---------- 69 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILE-EEWVQVIICDQRMPGRTGVDFLTEVRER---------- 69 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHH-HSCEEEEEEESCCSSSCHHHHHHHHHHH----------
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHHHHh----------
Confidence 37999999999999999999875 99999999999999885 4579999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHc-CCCeEEeCCCCHHHHHHHHhhhC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS-GMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~a-G~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+++|||++|+........++++. |+++|+.||++.++|..+|.+.+
T Consensus 70 ------------~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 117 (139)
T 2jk1_A 70 ------------WPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAA 117 (139)
T ss_dssp ------------CTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred ------------CCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHH
Confidence 246899999999888888888876 59999999999999999987653
No 109
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.69 E-value=1.1e-16 Score=184.10 Aligned_cols=118 Identities=25% Similarity=0.399 Sum_probs=107.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++.++..+..+|+..|+.|..+.+|.+|++.+. ...||+||+|+.||+|||++++++||+..
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~-~~~~dlvllD~~mp~~~G~~~~~~l~~~~--------- 71 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAA-RDLPDIILLDVMMPGMDGFTVCRKLKDDP--------- 71 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHHST---------
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHhcCc---------
Confidence 47999999999999999999999999999999999999885 45799999999999999999999999731
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
..+++|||++|+....+...+|+++|++|||.||++.++|..+|++.+
T Consensus 72 -----------~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~ 119 (459)
T 1w25_A 72 -----------TTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLT 119 (459)
T ss_dssp -----------TTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHH
T ss_pred -----------ccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 135799999999999999999999999999999999999999887653
No 110
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.68 E-value=1.8e-16 Score=150.33 Aligned_cols=116 Identities=23% Similarity=0.351 Sum_probs=107.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNR 786 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~ 786 (856)
..+||||||++..+..++..|+..|+.+. ++.++.+|++.+. ...||+||+|+.|| +++|++++++||+.
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~-~~~~dlii~d~~~~~~~~g~~~~~~l~~~------- 80 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAP-DLRPDIALVDIMLCGALDGVETAARLAAG------- 80 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-HHCCSEEEEESSCCSSSCHHHHHHHHHHH-------
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHH-hCCCCEEEEecCCCCCCCHHHHHHHHHhC-------
Confidence 46899999999999999999999999999 5999999999885 45799999999999 89999999999973
Q ss_pred ccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 81 ----------------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 126 (140)
T 3cg0_A 81 ----------------CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAI 126 (140)
T ss_dssp ----------------SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHH
T ss_pred ----------------CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999998765
No 111
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.68 E-value=2.2e-16 Score=146.57 Aligned_cols=119 Identities=21% Similarity=0.309 Sum_probs=108.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
.+||||||++..+..+...|++.|+.|..+.++.+|++.+. .+.||+||+|+.|| .++|++++++||+..
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~-------- 76 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIR-RDRPDLVVLAVDLSAGQNGYLICGKLKKDD-------- 76 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHH-HHCCSEEEEESBCGGGCBHHHHHHHHHHST--------
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHH-hcCCCEEEEeCCCCCCCCHHHHHHHHhcCc--------
Confidence 58999999999999999999999999999999999999885 45799999999999 999999999999731
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
..+++|||++ +....+...+++++|+++|+.||++.++|...|++.+..
T Consensus 77 ------------~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 77 ------------DLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp ------------TTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred ------------cccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 1357899999 888888889999999999999999999999999988654
No 112
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.68 E-value=1.4e-16 Score=178.84 Aligned_cols=115 Identities=24% Similarity=0.429 Sum_probs=107.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+||||||++..+..++.+|+..||.|..+.+|.+|++.+. .+.||+||+|++||+|||++++++||+.
T Consensus 2 ~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-~~~~DlvllD~~mp~~dG~ell~~lr~~----------- 69 (387)
T 1ny5_A 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS-EKHFNVVLLDLLLPDVNGLEILKWIKER----------- 69 (387)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHH-HSCCSEEEEESBCSSSBHHHHHHHHHHH-----------
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhh-----------
Confidence 6999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+++|||++|+....+...+++++|++||+.||++.++|...|.+.+
T Consensus 70 -----------~~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l 116 (387)
T 1ny5_A 70 -----------SPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAI 116 (387)
T ss_dssp -----------CTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred -----------CCCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999887754
No 113
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.68 E-value=6.9e-17 Score=154.67 Aligned_cols=110 Identities=25% Similarity=0.282 Sum_probs=93.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhhc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccc
Q 003018 708 LGRKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785 (856)
Q Consensus 708 ~~~~ILvVdDn~~n~~~l~~~L~~~-g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~ 785 (856)
.+.+||||||++..+..++.+|++. |+.+. ++.++.+|++.+.....||+||+|+.||++||++++++||+..
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~lr~~~----- 86 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMDGMEFLRHAKLKT----- 86 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTTSCCCTTCHHHHHHHHHC-----
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----
Confidence 3568999999999999999999998 88865 8999999999885332799999999999999999999999731
Q ss_pred cccccccchhhhccCCCCCCcEEEEec--CCCHHhHHHHHHcCCCeEEeCCCCHHHH
Q 003018 786 RIRRGEVSIEAYENVSNFHVPILAMTA--DVIQATYEECLRSGMDGYVSKPFEAEQL 840 (856)
Q Consensus 786 ~~~~g~~~~~~~~~~~~~~~pIIalTa--~~~~~~~~~~~~aG~d~yl~KP~~~~~L 840 (856)
..|||++|+ ....+...+|+++|+++||.||++.++|
T Consensus 87 ------------------~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l 125 (145)
T 3kyj_B 87 ------------------RAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSH 125 (145)
T ss_dssp ------------------CCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC--
T ss_pred ------------------CCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 378888887 5566778899999999999999994433
No 114
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.68 E-value=2.4e-16 Score=164.60 Aligned_cols=118 Identities=25% Similarity=0.407 Sum_probs=109.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||+++++.||+.
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvilD~~l~~~~g~~~~~~lr~~---------- 74 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVR-ELRPDLVLLDLMLPGMNGIDVCRVLRAD---------- 74 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHHHTT----------
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhC----------
Confidence 48999999999999999999999999999999999999885 4579999999999999999999999962
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
+.+|||++|+....+...+++++|++||+.||++.++|..+|.+.+...
T Consensus 75 -------------~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 75 -------------SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp -------------CCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred -------------CCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 2689999999999999999999999999999999999999999887653
No 115
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.68 E-value=1.6e-16 Score=152.82 Aligned_cols=103 Identities=19% Similarity=0.300 Sum_probs=83.1
Q ss_pred ecHHHHHHHHHHHHHHHhhcCCC----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCC
Q 003018 371 GDPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 446 (856)
Q Consensus 371 ~D~~rl~qIl~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (856)
.|...+.+++.||+.||+||+.. |.|.|.+...+
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~------------------------------------------ 72 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIED------------------------------------------ 72 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEET------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeC------------------------------------------
Confidence 58899999999999999999954 77777764321
Q ss_pred CCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceE
Q 003018 447 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 526 (856)
Q Consensus 447 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~Gst 526 (856)
..+.|+|+|+|+||+ .++++|+||++.+. ...|+||||+||+++++ ++.++|.+++||+
T Consensus 73 -----------~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~----~~~~~GlGL~iv~~~~~----~i~~~~~~~~Gt~ 131 (145)
T 1th8_A 73 -----------GVVHLTVRDEGVGIP--DIEEARQPLFTTKP----ELERSGMGFTIMENFMD----EVIVESEVNKGTT 131 (145)
T ss_dssp -----------TEEEEEEEECSSCCS--CHHHHTCCC-----------CCCSCHHHHHHHHSS----EEEEEEETTTEEE
T ss_pred -----------CEEEEEEEECCCCcC--hHHHhhcccccCCC----CCCCCcchHHHHHHHHh----eEEEEeCCCCCEE
Confidence 247899999999999 88999999997543 34689999999999988 9999999999999
Q ss_pred EEEEEEeCCC
Q 003018 527 FTFTAVFGNG 536 (856)
Q Consensus 527 F~~~lp~~~~ 536 (856)
|++++|+...
T Consensus 132 v~~~lp~~~~ 141 (145)
T 1th8_A 132 VYLKKHGIHH 141 (145)
T ss_dssp EEEEECCC--
T ss_pred EEEEEecccc
Confidence 9999997543
No 116
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.67 E-value=4.5e-17 Score=168.64 Aligned_cols=120 Identities=8% Similarity=-0.030 Sum_probs=104.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhh-cCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh-hccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKR-YGAAVVC-VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE-MEHNFNNR 786 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~-~g~~v~~-a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~-~~~~~~~~ 786 (856)
.+||||||++..+..++.+|++ .|+.|.. +.++.+|+..+.....||+||+|++||+|||++++++||+ .
T Consensus 8 ~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~------- 80 (225)
T 3klo_A 8 LNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHIS------- 80 (225)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHH-------
T ss_pred eEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhh-------
Confidence 4899999999999999999995 6888865 5677777764324567999999999999999999999997 3
Q ss_pred ccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
.+++|||++|+....+....++++|++|||.||++.++|..+|++.+...
T Consensus 81 ---------------~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 130 (225)
T 3klo_A 81 ---------------CPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDE 130 (225)
T ss_dssp ---------------CTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred ---------------CCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCC
Confidence 34689999999999999999999999999999999999999999877543
No 117
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.67 E-value=1.7e-16 Score=164.70 Aligned_cols=116 Identities=28% Similarity=0.445 Sum_probs=107.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||+++++.||+.
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvllD~~l~~~~g~~~~~~l~~~---------- 76 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSAT-ENRPDAIVLDINMPVLDGVSVVTALRAM---------- 76 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESSCSSSCHHHHHHHHHHT----------
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 58999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+++|||++|+....+...+++++|++||+.||++.++|..+|.+.+
T Consensus 77 ------------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~ 123 (233)
T 1ys7_A 77 ------------DNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALL 123 (233)
T ss_dssp ------------TCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 24689999999999988899999999999999999999999998764
No 118
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.67 E-value=5e-16 Score=145.61 Aligned_cols=119 Identities=25% Similarity=0.373 Sum_probs=106.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC-CCHHHHHHHHHhhcccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-MDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~-mdG~e~~~~IR~~~~~~~~~~ 787 (856)
..+||||||++..+..++..|+..|+.|..+.++.+|++.+.....||+||+|+.||+ ++|++++++||+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~-------- 76 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREI-------- 76 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHH--------
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhc--------
Confidence 4689999999999999999999999999999999999999853227999999999997 9999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
.+++|||++|+....+...+++++| +|+.||++.++|..+|++.+...
T Consensus 77 --------------~~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 77 --------------DPNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp --------------CTTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred --------------CCCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 2468999999999888888887776 89999999999999999887543
No 119
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.66 E-value=2.7e-16 Score=152.08 Aligned_cols=121 Identities=18% Similarity=0.278 Sum_probs=98.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhc-CC-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRY-GA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~-g~-~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+||||||++..+..+..+|+.. |+ .|..+.++.+|++.+.....||+||+|+.||+++|++++++||+.
T Consensus 4 ~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~-------- 75 (154)
T 2qsj_A 4 TVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRF-------- 75 (154)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHH--------
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHh--------
Confidence 47999999999999999999998 88 788999999999998542679999999999999999999999974
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 852 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~~ 852 (856)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|.+.+....
T Consensus 76 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 76 --------------DPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp --------------CTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred --------------CCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 346899999999998999999999999999999999999999998876543
No 120
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.66 E-value=4.5e-16 Score=142.12 Aligned_cols=117 Identities=20% Similarity=0.285 Sum_probs=105.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
++||||||++..+..+..+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+..
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~-~~~~dlii~d~~~~~~~~~~~~~~l~~~~--------- 71 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLD-LLQPIVILMAWPPPDQSCLLLLQHLREHQ--------- 71 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-HHCCSEEEEECSTTCCTHHHHHHHHHHTC---------
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHH-hcCCCEEEEecCCCCCCHHHHHHHHHhcc---------
Confidence 58999999999999999999999999999999999999885 45799999999999999999999999732
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
..+++|||++|+..... +++++|+++|+.||++.++|...+.+.+..
T Consensus 72 -----------~~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 118 (119)
T 2j48_A 72 -----------ADPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLCPP 118 (119)
T ss_dssp -----------CCSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTCCC
T ss_pred -----------ccCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHhcC
Confidence 12578999999987765 899999999999999999999999988754
No 121
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.66 E-value=2.8e-16 Score=162.81 Aligned_cols=117 Identities=26% Similarity=0.362 Sum_probs=108.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvllD~~l~~~~g~~~~~~l~~~---------- 73 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFD-RAGADIVLLDLMLPGMSGTDVCKQLRAR---------- 73 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHHHHH----------
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-ccCCCEEEEECCCCCCCHHHHHHHHHcC----------
Confidence 48999999999999999999999999999999999999885 4579999999999999999999999972
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+..
T Consensus 74 -------------~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 74 -------------SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp -------------CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred -------------CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 358999999999999999999999999999999999999999887654
No 122
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.66 E-value=2.4e-16 Score=149.89 Aligned_cols=120 Identities=36% Similarity=0.500 Sum_probs=102.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..++..|+..|+.+..+.++.+|++.+. ...||+||+|+.||++||++++++||+....
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~-~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~------- 82 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQ-NRQFDVIIMDIQMPVMDGLEAVSEIRNYERT------- 82 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHH-HSCCSEEEECTTCCSSCHHHHHHHHHHHHHH-------
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHHHhhhhh-------
Confidence 48999999999999999999999999999999999999885 4579999999999999999999999974210
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
...+.+|||++|+........ ++|+++||.||++.++|..+|.+.+..
T Consensus 83 ----------~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 83 ----------HNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp ----------HTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred ----------cCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 013468999999876655433 789999999999999999999987654
No 123
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.66 E-value=6.4e-16 Score=151.68 Aligned_cols=121 Identities=24% Similarity=0.329 Sum_probs=104.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcC-CE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYG-AA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g-~~-v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 786 (856)
..+||||||++..+..++.+|++.| +. +.++.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-~~~~dlvilD~~l~~~~g~~l~~~lr~~------- 96 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAI-ELKPDVITMDIEMPNLNGIEALKLIMKK------- 96 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHHHHH-------
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhc-cCCCCEEEEeCCCCCCCHHHHHHHHHhc-------
Confidence 3589999999999999999999875 33 557999999999885 4579999999999999999999999973
Q ss_pred ccccccchhhhccCCCCCCcEEEEecCCCHH--hHHHHHHcCCCeEEeCCCC---------HHHHHHHHhhhCCCCCC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQA--TYEECLRSGMDGYVSKPFE---------AEQLYREVSRFFPPIPD 853 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~--~~~~~~~aG~d~yl~KP~~---------~~~L~~~l~~~~~~~~~ 853 (856)
. .+|||++|+..... ...+++++|+++||.||++ .++|.+++++.+...+.
T Consensus 97 ---------------~-~~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~~~~ 158 (164)
T 3t8y_A 97 ---------------A-PTRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNVDPR 158 (164)
T ss_dssp ---------------S-CCEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTSCC-
T ss_pred ---------------C-CceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCCCch
Confidence 2 27999999977654 6679999999999999999 78999999999876543
No 124
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.65 E-value=1.4e-15 Score=143.92 Aligned_cols=117 Identities=15% Similarity=0.237 Sum_probs=106.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 003018 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786 (856)
Q Consensus 707 ~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 786 (856)
..+.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+|| ||+++|++++++||+.
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvi----~~~~~g~~~~~~l~~~------- 83 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD-IRNYDLVM----VSDKNALSFVSRIKEK------- 83 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-HSCCSEEE----ECSTTHHHHHHHHHHH-------
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHH-cCCCCEEE----EcCccHHHHHHHHHhc-------
Confidence 34679999999999999999999999999999999999999885 46799999 9999999999999972
Q ss_pred ccccccchhhhccCCCC-CCcEEEEecCCCHHhHHHHHHcCCCeEEeCCC-CHHHHHHHHhhhCCCC
Q 003018 787 IRRGEVSIEAYENVSNF-HVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVSRFFPPI 851 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~-~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~-~~~~L~~~l~~~~~~~ 851 (856)
+ ++|||++|+....+...+++++|+++|+.||+ +.++|..+|.+.+...
T Consensus 84 ----------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 84 ----------------HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp ----------------STTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred ----------------CCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 3 58999999999999999999999999999999 9999999999987653
No 125
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.65 E-value=7.5e-16 Score=158.55 Aligned_cols=113 Identities=27% Similarity=0.452 Sum_probs=105.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+||||||++..+..+..+|+..| .|..+.++.+|++.+ ..||+||+|+.||++||++++++||+.
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~---~~~dlvllD~~lp~~~g~~~~~~lr~~----------- 68 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE---EAFHVVVLDVMLPDYSGYEICRMIKET----------- 68 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC---SCCSEEEEESBCSSSBHHHHHHHHHHH-----------
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 79999999999999999999999 999999999999976 569999999999999999999999973
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+.
T Consensus 69 -----------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 69 -----------RPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLE 116 (220)
T ss_dssp -----------CTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred -----------CCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 246899999999999999999999999999999999999999987754
No 126
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.64 E-value=1.2e-15 Score=145.29 Aligned_cols=115 Identities=19% Similarity=0.296 Sum_probs=100.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhc-CCEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~-g~~v-~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 786 (856)
..+||||||++..+..+...|+.. |+.+ ..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~------- 80 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQ-HNKVDAIFLDINIPSLDGVLLAQNISQF------- 80 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHH-HCCCSEEEECSSCSSSCHHHHHHHHTTS-------
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH-hCCCCEEEEecCCCCCCHHHHHHHHHcc-------
Confidence 358999999999999999999986 8884 58999999999885 4579999999999999999999999973
Q ss_pred ccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+.+|||++|+.. +...+++++|+++|+.||++.++|..+|.+++
T Consensus 81 ---------------~~~~~ii~~s~~~--~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (143)
T 2qv0_A 81 ---------------AHKPFIVFITAWK--EHAVEAFELEAFDYILKPYQESRIINMLQKLT 125 (143)
T ss_dssp ---------------TTCCEEEEEESCC--TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ---------------CCCceEEEEeCCH--HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHH
Confidence 2356899999873 46788999999999999999999999998765
No 127
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.64 E-value=3.8e-16 Score=173.25 Aligned_cols=117 Identities=17% Similarity=0.246 Sum_probs=105.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHh-hcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLK-RYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~-~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
.+||||||++..+..++..|. ..|+.|..+.+|.+|++.+. ...||+||+|+.||+|||++++++||+..
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~-~~~~dlvl~D~~mp~~~G~~~~~~l~~~~-------- 89 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVAN-QIKPTVILQDLVMPGVDGLTLLAAYRGNP-------- 89 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHH-HHCCSEEEEESBCSSSBHHHHHHHHTTST--------
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHhcCc--------
Confidence 379999999999999999996 46999999999999999885 45799999999999999999999999631
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhh
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 847 (856)
..+++|||++|+....+...+|+++|++|||.||++.++|..+|.+.
T Consensus 90 ------------~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~ 136 (358)
T 3bre_A 90 ------------ATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYH 136 (358)
T ss_dssp ------------TTTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHH
T ss_pred ------------ccCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHH
Confidence 13579999999999999999999999999999999999999888754
No 128
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.64 E-value=7.4e-16 Score=146.01 Aligned_cols=117 Identities=17% Similarity=0.217 Sum_probs=102.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCC-CCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 003018 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 786 (856)
Q Consensus 708 ~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~-~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 786 (856)
.+.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. . ..||+||+|+.||+++|++++++||+.
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~~dlvilD~~l~~~~g~~~~~~l~~~------- 85 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRS-QLSTCDLLIVSDQLVDLSIFSLLDIVKEQ------- 85 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGG-GGGSCSEEEEETTCTTSCHHHHHHHHTTS-------
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHH-hCCCCCEEEEeCCCCCCCHHHHHHHHHhh-------
Confidence 4578999999999999999999999999999999999999885 4 579999999999999999999999962
Q ss_pred ccccccchhhhccCCCCCCcEEEEe-cCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCCC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMT-ADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 851 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalT-a~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 851 (856)
.+++|||++| +....+. .+++ +++|+.||++.++|...|.+.+...
T Consensus 86 ---------------~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 86 ---------------TKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp ---------------SSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred ---------------CCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 3468999999 8877766 6666 9999999999999999999987654
No 129
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.63 E-value=4.5e-16 Score=157.29 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=101.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 708 ~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+.+||||||++..+..+...|...||.|..+.++.+|+ ...||+||+|+.||+|||+ +++.+|..
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al-----~~~~dlvl~D~~mp~~~g~-l~~~~~~~-------- 76 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF-----DVPVDVVFTSIFQNRHHDE-IAALLAAG-------- 76 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC-----SSCCSEEEEECCSSTHHHH-HHHHHHHS--------
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC-----CCCCCEEEEeCCCCccchH-HHHHHhcc--------
Confidence 346899999999999999999999999999999988765 2469999999999999999 88888862
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.+++|||++|+....+...+++++|++|||.||++.++|...|.+.+
T Consensus 77 --------------~~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~ 123 (196)
T 1qo0_D 77 --------------TPRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSAR 123 (196)
T ss_dssp --------------CTTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHH
T ss_pred --------------CCCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHH
Confidence 14789999999999999999999999999999999999998887643
No 130
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.62 E-value=2.6e-16 Score=177.64 Aligned_cols=118 Identities=22% Similarity=0.311 Sum_probs=103.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhh-cCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKR-YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~-~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
.+||||||++.++..++.+|++ .|+.|.++.||.+|++.+.....||+||+|++||+|||++++++||+..
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~~~DlvllDi~mP~~dG~ell~~l~~~~-------- 75 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDLQMSGMDGLAFLRHASLSG-------- 75 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHSCEEEEEECSSCSSSCHHHHHHHHHHHT--------
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--------
Confidence 4899999999999999999998 5789999999999999885324799999999999999999999999742
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCH-----HhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQ-----ATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~-----~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
+.+|||++|+.... ....+|+++|+++|+.||++.++|..+|.+.+.
T Consensus 76 --------------~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~ 127 (400)
T 3sy8_A 76 --------------KVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNA 127 (400)
T ss_dssp --------------CEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred --------------CCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHH
Confidence 35678888877766 567789999999999999999999999987753
No 131
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.62 E-value=3.9e-17 Score=151.12 Aligned_cols=117 Identities=26% Similarity=0.359 Sum_probs=107.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 789 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 789 (856)
.+||||||++..+..+...|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~---------- 72 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA-SKTPDVLLSDIRMPGMDGLALLKQIKQR---------- 72 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSS-SCCCSCEEECSCSSHHHHCSTHHHHHHH----------
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh-cCCCCEEEEeeecCCCCHHHHHHHHHhh----------
Confidence 47999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 790 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 790 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+++|||++|+....+...+++++|+++|+.||++.++|...+.+.+.
T Consensus 73 ------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 73 ------------HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp ------------CTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHH
Confidence 246899999999888888899999999999999999999999987653
No 132
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.62 E-value=1.8e-16 Score=164.27 Aligned_cols=116 Identities=20% Similarity=0.224 Sum_probs=105.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcC-CEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYG-AAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g-~~v-~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
+||||||++..+..++.+|+..| +.+ ..+.++.+|++.+. ...||+||+|+.||+|||++++++||+.
T Consensus 3 ~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~-~~~~dlvllD~~lp~~~g~~~~~~lr~~--------- 72 (225)
T 3c3w_A 3 KVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVP-AARPDVAVLDVRLPDGNGIELCRDLLSR--------- 72 (225)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHH-HHCCSEEEECSEETTEEHHHHHHHHHHH---------
T ss_pred EEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-hcCCCEEEEeCCCCCCCHHHHHHHHHHh---------
Confidence 79999999999999999999887 885 47999999999885 4579999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
.+.+|||++|+....+...+++++|++||+.||++.++|..+|.+.+.
T Consensus 73 -------------~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 120 (225)
T 3c3w_A 73 -------------MPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 (225)
T ss_dssp -------------CTTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 346899999999999999999999999999999999999999987643
No 133
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.60 E-value=1.2e-15 Score=161.87 Aligned_cols=103 Identities=22% Similarity=0.343 Sum_probs=88.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhh-cCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKR-YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~-~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
++||||||++..+..+...|.+ .|+.+. +.++.+|+..+. ...||+||+|++||+|||++++++||+.
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~-~~~~~~~~~~~~-~~~~dlvllD~~mP~~~G~~~~~~lr~~--------- 73 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEID-AFDTLEGARHCQ-GDEYVVALVDLTLPDAPSGEAVKVLLER--------- 73 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEE-EESSTGGGTTCC-TTTEEEEEEESCBTTBTTSHHHHHHHHT---------
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEE-EeChHHHHHHhh-cCCCcEEEEeCCCCCCCHHHHHHHHHhC---------
Confidence 5899999999999999999976 477775 556666666654 4679999999999999999999999962
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHH
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 838 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~ 838 (856)
.+|||++|+....+...+|+++|++||+.||+...
T Consensus 74 ---------------~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~ 108 (259)
T 3luf_A 74 ---------------GLPVVILTADISEDKREAWLEAGVLDYVMKDSRHS 108 (259)
T ss_dssp ---------------TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHHH
T ss_pred ---------------CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchhH
Confidence 47999999999999999999999999999997543
No 134
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.60 E-value=7.3e-15 Score=151.42 Aligned_cols=114 Identities=17% Similarity=0.276 Sum_probs=105.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 003018 711 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 711 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 790 (856)
+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ...||+|| ||+|||+++++.||+. +
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvi----lp~~~g~~~~~~lr~~-~--------- 66 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD-IRNYDLVM----VSDKNALSFVSRIKEK-H--------- 66 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHT-TSCCSEEE----ECCTTHHHHHHHHHHH-C---------
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHh-cCCCCEEE----eCCCCHHHHHHHHHhC-C---------
Confidence 6999999999999999999999999999999999999985 56799999 9999999999999973 1
Q ss_pred ccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCC-CHHHHHHHHhhhCCCC
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVSRFFPPI 851 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~-~~~~L~~~l~~~~~~~ 851 (856)
.++|||++|+....+...+++++|+++|+.||+ +.++|..+|.+.+...
T Consensus 67 ------------~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 67 ------------SSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp ------------TTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred ------------CCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 268999999999999999999999999999999 9999999999887654
No 135
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.53 E-value=3.2e-14 Score=157.11 Aligned_cols=115 Identities=19% Similarity=0.279 Sum_probs=100.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhc-CCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~-g~~-v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
.+||||||++..+..++.+|++. |+. |..+.++.+|++.+. ...||+|++|+.||+|||++++++||+.
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~-~~~pDlVllDi~mp~~dGlell~~l~~~-------- 74 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK-KFNPDVLTLDVEMPRMDGLDFLEKLMRL-------- 74 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-HHCCSEEEEECCCSSSCHHHHHHHHHHS--------
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHh-ccCCCEEEEECCCCCCCHHHHHHHHHhc--------
Confidence 48999999999999999999986 898 569999999999885 4579999999999999999999999972
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCH--HhHHHHHHcCCCeEEeCCCCH---------HHHHHHHhhhC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQ--ATYEECLRSGMDGYVSKPFEA---------EQLYREVSRFF 848 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~--~~~~~~~~aG~d~yl~KP~~~---------~~L~~~l~~~~ 848 (856)
. .+|||++|+.... +...+++++|++||+.||++. ++|...|++..
T Consensus 75 --------------~-p~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~ 131 (349)
T 1a2o_A 75 --------------R-PMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAA 131 (349)
T ss_dssp --------------S-CCCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHH
T ss_pred --------------C-CCcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHH
Confidence 2 3899999998775 457899999999999999983 78888876553
No 136
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.50 E-value=2.2e-14 Score=173.82 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=102.8
Q ss_pred eEEEEcCCH-HH-------HHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC----CCHHHHHHHHHh
Q 003018 711 KILIVDDNN-VN-------LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE----MDGFEATKIIRE 778 (856)
Q Consensus 711 ~ILvVdDn~-~n-------~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~----mdG~e~~~~IR~ 778 (856)
+||||||++ .. ++.++..|++.||+|..+.||++|+..+.....||+|++|++||+ |||++++++||+
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~lp~~~~~~~G~~ll~~iR~ 81 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCCCCcccccccHHHHHHHHHH
Confidence 799999999 88 999999999999999999999999999964445999999999999 999999999998
Q ss_pred hcccccccccccccchhhhccCCCCCCcEEEEecCCC-HHhHHHHHHcCCCeEEeCCCCHHH-HHHHHhh
Q 003018 779 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI-QATYEECLRSGMDGYVSKPFEAEQ-LYREVSR 846 (856)
Q Consensus 779 ~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~-~~~~~~~~~aG~d~yl~KP~~~~~-L~~~l~~ 846 (856)
. ...+|||++|+... .+++...+..|+|||+.||++..+ |...|..
T Consensus 82 ~----------------------~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a 129 (755)
T 2vyc_A 82 R----------------------QQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVA 129 (755)
T ss_dssp H----------------------STTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHH
T ss_pred h----------------------CCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHH
Confidence 4 23699999999988 888999999999999999999999 6555553
No 137
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.47 E-value=7e-14 Score=162.99 Aligned_cols=115 Identities=19% Similarity=0.304 Sum_probs=87.8
Q ss_pred EeecHHHHHHHHHHHHHHHhhcCCC-C---eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCC
Q 003018 369 LIGDPGRFRQIITNLMGNSIKFTEK-G---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 444 (856)
Q Consensus 369 v~~D~~rl~qIl~NLl~NAiKfT~~-G---~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (856)
+.+|+.+|.||+.|||+||++|+.. | .|.|.+....
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~---------------------------------------- 70 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTG---------------------------------------- 70 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEET----------------------------------------
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECC----------------------------------------
Confidence 5689999999999999999999974 5 5655543210
Q ss_pred CCCCCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCC--CCCCCCCcccchHHHHHHHHHHcCCE-EEEEEeC
Q 003018 445 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP--SISRTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 521 (856)
Q Consensus 445 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~--s~~~~~~GtGLGLsI~k~lv~~mgG~-I~v~S~~ 521 (856)
...+.|+|+|+|+|||++.++++|++|+..+. ......+|+|+||++|+.+++.|||+ |.++|..
T Consensus 71 ------------~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~ 138 (621)
T 2q2e_B 71 ------------PDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKT 138 (621)
T ss_dssp ------------TTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEEC
T ss_pred ------------CcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCceechhhhhHHHHHhCCCceeEEeec
Confidence 02467999999999999999999988754432 11234589999999999999999999 8999988
Q ss_pred CC---ceEEEEEEEeCC
Q 003018 522 NI---GSTFTFTAVFGN 535 (856)
Q Consensus 522 g~---GstF~~~lp~~~ 535 (856)
+. |++|+|.+|...
T Consensus 139 ~gg~~g~~~~~~lp~~~ 155 (621)
T 2q2e_B 139 SPTAPAHYYELMINTST 155 (621)
T ss_dssp SSSSCEEEEECCCCSSS
T ss_pred cCCccceEEEEecchhc
Confidence 74 556665555443
No 138
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.92 E-value=3.7e-10 Score=116.76 Aligned_cols=93 Identities=27% Similarity=0.371 Sum_probs=75.5
Q ss_pred CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecC
Q 003018 734 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD 813 (856)
Q Consensus 734 ~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~ 813 (856)
+.|..+.++.+|++.+. ...||+||+|++||+|||++++++||+.. +..|+++++..
T Consensus 6 ~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~~p~~~g~~~~~~l~~~~----------------------~~~~i~vi~~~ 62 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYK-ELKPDIVTMDITMPEMNGIDAIKEIMKID----------------------PNAKIIVCSAM 62 (237)
T ss_dssp EEEECCCSSSTTHHHHH-HHCCSCEEEECCSTTSSHHHHHHHHHHHS----------------------SSCCEEEECCS
T ss_pred EEEEECCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHhC----------------------CCCCEEEEECC
Confidence 44555889999999885 45799999999999999999999999742 13445555655
Q ss_pred CCHHhHHHHHHcCCCeEEeCC--CCHHHHHHHHhhhCC
Q 003018 814 VIQATYEECLRSGMDGYVSKP--FEAEQLYREVSRFFP 849 (856)
Q Consensus 814 ~~~~~~~~~~~aG~d~yl~KP--~~~~~L~~~l~~~~~ 849 (856)
...+...+++++|+++|+.|| ++..+|...+.+.+.
T Consensus 63 ~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 63 GQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFG 100 (237)
T ss_dssp STHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhC
Confidence 568899999999999999999 888888888876654
No 139
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.52 E-value=5.3e-08 Score=108.30 Aligned_cols=86 Identities=24% Similarity=0.368 Sum_probs=65.4
Q ss_pred eecHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCC
Q 003018 370 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 449 (856)
Q Consensus 370 ~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (856)
.++...+.+++.|+++||+++ ..+.|.|.+..
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~-~~~~I~V~i~~----------------------------------------------- 62 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG-YATEILVRLNE----------------------------------------------- 62 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCEEEEEECT-----------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHhhhC-CCCEEEEEEEc-----------------------------------------------
Confidence 478899999999999999995 35667666520
Q ss_pred CCCCCcCceeEEEEEEecCCCCChhhHhh--------hcCccccCCC----CCCCCCCcccchHHHHHHHHHHcC
Q 003018 450 FKSSSADLINLIVSVEDTGQGIPLEAQSR--------IFTPFMQVGP----SISRTHGGTGIGLSISKYLVGRMK 512 (856)
Q Consensus 450 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~--------iF~pF~q~d~----s~~~~~~GtGLGLsI~k~lv~~mg 512 (856)
+ -.|+|.|+|+|||++.+++ +|.+|+..+. ......|+.|+||++|+.+++.+.
T Consensus 63 ------~---~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~~ 128 (390)
T 1kij_A 63 ------D---GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTV 128 (390)
T ss_dssp ------T---SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEE
T ss_pred ------C---CEEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccCccccccCCCCCcceeeecccccceE
Confidence 0 0489999999999999888 9988876532 111234679999999999997653
No 140
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.42 E-value=4.7e-07 Score=98.80 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCC
Q 003018 375 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 454 (856)
Q Consensus 375 rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (856)
++.+++.|||+||+++. ...|.|.+.. .
T Consensus 24 ~~~~~v~ELi~NaidA~-a~~I~I~i~~--~------------------------------------------------- 51 (333)
T 1b63_A 24 RPASVVKELVENSLDAG-ATRIDIDIER--G------------------------------------------------- 51 (333)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEG--G-------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHCC-CCeEEEEEEe--C-------------------------------------------------
Confidence 67899999999999997 4566665531 0
Q ss_pred cCceeEEEEEEecCCCCChhhHhhhcCccccCCCCC------CCCCCcccchHHHHHHHHHHcCCEEEEEEeCCC
Q 003018 455 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 523 (856)
Q Consensus 455 ~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~------~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~ 523 (856)
....|+|.|+|+||+++++..+|++|++.+... ....|+.|+||+.+..+ +++.+.|....
T Consensus 52 ---~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~~G~gl~si~~v-----s~l~v~s~~~~ 118 (333)
T 1b63_A 52 ---GAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSV-----SRLTLTSRTAE 118 (333)
T ss_dssp ---GTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCCSSCHHHHHHTT-----SEEEEEEECTT
T ss_pred ---CceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhhhccccCccccchhhhhcC-----CcEEEEEecCC
Confidence 012589999999999999999999998764221 12457799999987554 36889888643
No 141
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.36 E-value=1.8e-06 Score=77.69 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003018 247 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 318 (856)
Q Consensus 247 ~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~ 318 (856)
..+..+++.....+.+|++++|||+||||++|.++++++.+ ...++++.+..++++|..++++++++
T Consensus 47 n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~-----~~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 47 ERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSE-----QDGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCG-----GGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344455556677889999999999999999999998753 23445689999999999999999987
No 142
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.34 E-value=9.5e-07 Score=97.33 Aligned_cols=88 Identities=16% Similarity=0.070 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCC
Q 003018 375 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 454 (856)
Q Consensus 375 rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (856)
++.+++.|||+||+++. .+.|.|.+.. .
T Consensus 34 ~~~~vl~eLv~NAiDA~-a~~I~I~i~~--~------------------------------------------------- 61 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAG-ATNIDLKLKD--Y------------------------------------------------- 61 (365)
T ss_dssp CHHHHHHHHHHHHHHTT-CSEEEEEEEG--G-------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHCC-CCEEEEEEEe--C-------------------------------------------------
Confidence 57899999999999986 4566665521 0
Q ss_pred cCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCC-----CCCCcc-cchHHHHHHHHHHcCCEEEEEEeCC
Q 003018 455 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS-----RTHGGT-GIGLSISKYLVGRMKGEIGFVSIPN 522 (856)
Q Consensus 455 ~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~-----~~~~Gt-GLGLsI~k~lv~~mgG~I~v~S~~g 522 (856)
....|+|.|+|+||++++++++|++|++.+.... ....|. |+||+.+..+ . .+.+.|...
T Consensus 62 ---~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~rG~gl~si~~v----s-~v~v~t~~~ 127 (365)
T 1h7s_A 62 ---GVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCAL----S-DVTISTCHA 127 (365)
T ss_dssp ---GTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEEESSSSSHHHHHHHH----S-EEEEEEECT
T ss_pred ---CcEEEEEEECCCCcCHHHHHHHhhhccccccccccchhcccccCCCCchhhhhhhh----c-cEEEEEccC
Confidence 0125899999999999999999999998643211 111344 9999877654 3 788888764
No 143
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.30 E-value=1.7e-06 Score=94.14 Aligned_cols=89 Identities=19% Similarity=0.178 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCC
Q 003018 375 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 454 (856)
Q Consensus 375 rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (856)
++.+++.|||.||+++. .+.|.|.+. +.
T Consensus 28 ~~~~vv~eLv~NAidA~-a~~I~I~i~--~~------------------------------------------------- 55 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK-STSIQVIVK--EG------------------------------------------------- 55 (348)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--GG-------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHcC-CCEEEEEEE--eC-------------------------------------------------
Confidence 57899999999999995 456666652 10
Q ss_pred cCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCC------CCCCcccchHHHHHHHHHHcCCEEEEEEeCCC
Q 003018 455 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 523 (856)
Q Consensus 455 ~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~------~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~ 523 (856)
....|+|.|+|+|||+++++++|+||++.+.... ...|--|.||+-...+. ++.+.|....
T Consensus 56 ---~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-----~l~v~sr~~~ 122 (348)
T 3na3_A 56 ---GLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVA-----HVTITTKTAD 122 (348)
T ss_dssp ---GTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CCTTCHHHHHHHSS-----EEEEEEECTT
T ss_pred ---CEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhccccCCcCChHHHHhhccc-----EEEEEEEECC
Confidence 0125899999999999999999999998754321 22344588887554442 6899887643
No 144
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.20 E-value=1.4e-06 Score=97.86 Aligned_cols=89 Identities=25% Similarity=0.240 Sum_probs=60.8
Q ss_pred cHHHHHHHHHHHHHHHhhcC----CCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 003018 372 DPGRFRQIITNLMGNSIKFT----EKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 447 (856)
Q Consensus 372 D~~rl~qIl~NLl~NAiKfT----~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (856)
+...+..++.+|+.||++|+ ..|.|.|++....
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~------------------------------------------- 330 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAG------------------------------------------- 330 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECT-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcC-------------------------------------------
Confidence 45689999999999999998 3678888775321
Q ss_pred CCCCCCCcCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEE
Q 003018 448 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 527 (856)
Q Consensus 448 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF 527 (856)
...+.|+|.|+|+|+|+. + ..++.|+||.|++.|++.+ .+.+. +.|+++
T Consensus 331 ---------~~~l~i~V~D~G~g~~~~------------~-----~~~~~G~GL~lv~~l~~~~----~~~~~-~~G~~v 379 (399)
T 3ke6_A 331 ---------DGNVRASVIDRGQWKDHR------------D-----GARGRGRGLAMAEALVSEA----RIMHG-AGGTTA 379 (399)
T ss_dssp ---------TSEEEEEEEESCBC-----------------------------CHHHHHTTSSEE----EEEEE-TTEEEE
T ss_pred ---------CCEEEEEEEECCCCCCCC------------C-----CCCCCCcHHHHHHHHHHhe----eeEEC-CCcEEE
Confidence 124789999999999875 0 1246799999999988754 45554 579999
Q ss_pred EEEEEeC
Q 003018 528 TFTAVFG 534 (856)
Q Consensus 528 ~~~lp~~ 534 (856)
++.+++.
T Consensus 380 ~~~~~~~ 386 (399)
T 3ke6_A 380 TLTHRLS 386 (399)
T ss_dssp EEEEECE
T ss_pred EEEEEcC
Confidence 9999874
No 145
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=98.08 E-value=1.4e-05 Score=75.16 Aligned_cols=120 Identities=15% Similarity=0.269 Sum_probs=87.4
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
+++|+|+|||++..+.+.+..|+.+|+. +..++++.+|+..+... .+++++.|..+...+ ...++..+++....
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~--~~DlillD~~MP~md---G~el~~~ir~~~~~ 85 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG--DFDFVVTDWNMPGMQ---GIDLLKNIRADEEL 85 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSC---HHHHHHHHHHSTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCC---HHHHHHHHHhCCCC
Confidence 4578999999999999999999999996 78899999999988763 589999998776544 34456667665444
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
...++++++........... ...|...++.||++...|...+.+.+
T Consensus 86 ~~ipvI~lTa~~~~~~~~~~-~~~Ga~~yl~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 86 KHLPVLMITAEAKREQIIEA-AQAGVNGYIVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp TTCCEEEEESSCCHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 44444444433322211111 12367789999999999999988765
No 146
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.96 E-value=9.6e-06 Score=89.02 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCC
Q 003018 375 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 454 (856)
Q Consensus 375 rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (856)
++.+++.|||.||+++. ...|.|.+. +.
T Consensus 25 ~~~~vv~eLv~NaiDA~-a~~I~I~i~--~~------------------------------------------------- 52 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-ANQIEIIFK--DY------------------------------------------------- 52 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--TT-------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEEE--eC-------------------------------------------------
Confidence 57799999999999986 456666552 10
Q ss_pred cCceeEEEEEEecCCCCChhhHhhhcCccccCCCCCC------CCCCcccchHHHHHHHHHHcCCEEEEEEeCC--CceE
Q 003018 455 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIPN--IGST 526 (856)
Q Consensus 455 ~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~d~s~~------~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g--~Gst 526 (856)
....|+|.|+|+|||++.++.+|+||+..+.... ...|--|-||+-...+ +++.+.|... .|..
T Consensus 53 ---~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~av-----S~l~V~sr~~~~~~~~ 124 (367)
T 3h4l_A 53 ---GLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGI-----AKLSVITTTSPPKADK 124 (367)
T ss_dssp ---TTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEETTHHHHHHHHS-----SEEEEEEESSTTCEEE
T ss_pred ---CEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccCccchHHHHhhcc-----CEEEEEEEECCCCEEE
Confidence 0135999999999999999999999997654321 1122237777755444 2689988764 3444
Q ss_pred EEE
Q 003018 527 FTF 529 (856)
Q Consensus 527 F~~ 529 (856)
..+
T Consensus 125 ~~~ 127 (367)
T 3h4l_A 125 LEY 127 (367)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 147
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=97.80 E-value=0.00017 Score=71.87 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=29.6
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 003018 262 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 307 (856)
Q Consensus 262 ~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~ 307 (856)
+-+....||+.+=|+.|.|++++= .-++-.+|+..+....+.
T Consensus 23 ~~LR~qrHdf~NkLqvI~GLlql~----~ydea~~yI~~~~~~~q~ 64 (192)
T 1ixm_A 23 HLLGHSRHDWMNKLQLIKGNLSLQ----KYDRVFEMIEEMVIDAKH 64 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHH
Confidence 467778999999999999999862 123445666655554443
No 148
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.71 E-value=8.1e-05 Score=66.50 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003018 255 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 319 (856)
Q Consensus 255 ~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~q~~~l~~i~~~~~~L~~lIndlLd~s 319 (856)
.....+.+|++.+|||||||++.|.+.++.+.+. ..++.+.+...+.+|..+++++++++
T Consensus 55 ~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (115)
T 3zrx_A 55 QLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYL 114 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344577899999999999999999999977543 25677889999999999999998875
No 149
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=97.67 E-value=1.5e-05 Score=81.70 Aligned_cols=206 Identities=11% Similarity=0.105 Sum_probs=118.0
Q ss_pred EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCceEEEEeccCCccccCCCCCCCCCCce
Q 003018 588 VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 667 (856)
Q Consensus 588 v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 667 (856)
|..+.+..+++..+... .++++++|..+...+. ..++..++...... +.+++..... ....... ...+...+
T Consensus 8 v~~~~~~~~a~~~~~~~--~~dlvl~D~~~p~~~g---~~~~~~l~~~~~~~-~i~vi~~~~~-~~~~~~~-~~~Ga~~~ 79 (237)
T 3cwo_X 8 VDDATNGREAVEKYKEL--KPDIVTMDITMPEMNG---IDAIKEIMKIDPNA-KIIVCSAMGQ-QAMVIEA-IKAGAKDF 79 (237)
T ss_dssp EECCCSSSTTHHHHHHH--CCSCEEEECCSTTSSH---HHHHHHHHHHSSSC-CEEEECCSST-HHHHHHH-HHTTCCEE
T ss_pred EEECCCHHHHHHHHHhc--CCCEEEEeCCCCCCCH---HHHHHHHHHhCCCC-CEEEEECCCC-HHHHHHH-HHCCHHhe
Confidence 44456666666665543 3578888877654332 33455555433221 2233322221 1111111 11245678
Q ss_pred eccC--CchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHH
Q 003018 668 IMKP--LRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA 745 (856)
Q Consensus 668 ~~kp--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA 745 (856)
+.|| +....+...+.+.++.. ..++.+|+...+.. ..+...+.......+..+.
T Consensus 80 l~kp~~~~~~~l~~~i~~~~~~~---------------------~~~~~~d~~~~~~~---~~v~~~~g~~~~~~~~~~~ 135 (237)
T 3cwo_X 80 IVNTAAVENPSLITQIAQTFGSQ---------------------AVVVAIDAKRVDGE---FMVFTYSGKKNTGILLRDW 135 (237)
T ss_dssp EESHHHHHCTHHHHHHHHHHTGG---------------------GEEEEEEEEESSSC---EEEEETTTTEEEEEEHHHH
T ss_pred EeCCcccChHHHHHHHHHHhCCC---------------------ceEEEeeecccCCc---EEEEEeCCccccccCHHHH
Confidence 8888 67667777666655311 12444444221000 0000011122222344555
Q ss_pred HHHhCCCCCccEEEEeC-CCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHH
Q 003018 746 TELLMPPHQFDACFMDI-QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 824 (856)
Q Consensus 746 ~~~l~~~~~~DlilmDi-~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~ 824 (856)
+..+......+++++++ .++.|+|++ ++.|++... ..++|||++++....++..+|++
T Consensus 136 i~~~~~~~~~~vli~~~~~~g~~~g~~-~~~i~~~~~--------------------~~~~Pvia~~g~~~~~~~~~~~~ 194 (237)
T 3cwo_X 136 VVEVEKRGAGEILLTSIDRDGTKSGYD-TEMIRFVRP--------------------LTTLPIIASGGAGKMEHFLEAFL 194 (237)
T ss_dssp HHHHHHHTCSEEEEEETTTTTCCSCCC-HHHHHHHGG--------------------GCCSCEEEESCCCSHHHHHHHHH
T ss_pred HHHHhhcCCCeEEEEecCCCCcccccc-HHHHHHHHH--------------------hcCCCEEecCCCCCHHHHHHHHH
Confidence 55543333456999997 788899976 566665321 23689999999999999999999
Q ss_pred cCCCeEE------eCCCCHHHHHHHHhh
Q 003018 825 SGMDGYV------SKPFEAEQLYREVSR 846 (856)
Q Consensus 825 aG~d~yl------~KP~~~~~L~~~l~~ 846 (856)
+|||+++ .+|++..++.+.+.+
T Consensus 195 ~G~~~~~vg~a~~~~~~~~~~~~~~l~~ 222 (237)
T 3cwo_X 195 AGADAALAASVFHFREIDVRELKEYLKK 222 (237)
T ss_dssp HTCSEEEESHHHHTTSSCHHHHHHHHHT
T ss_pred cCcHHHhhhHHHHcCCCCHHHHHHHHHH
Confidence 9999995 899999999888765
No 150
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.62 E-value=5.2e-05 Score=77.57 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=38.2
Q ss_pred EEEEEecCCCCChhhHhhhcCccccCCC----------CCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCC
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTPFMQVGP----------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 522 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~pF~q~d~----------s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g 522 (856)
.|.|.|||+||+++++...|..+.+... ......|..|+|+.-+.. .+-++.|.|...
T Consensus 74 ~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~----~~~~v~v~S~~~ 141 (220)
T 2wer_A 74 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL----VADRVQVISKSN 141 (220)
T ss_dssp EEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhh----cCCeeEEEEecC
Confidence 5899999999999999888866543210 111233557999865533 345677777654
No 151
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=97.59 E-value=0.00024 Score=67.91 Aligned_cols=120 Identities=11% Similarity=0.147 Sum_probs=84.9
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
...+++++|+++..+......|+..|+.+. .+.+..+++..+......++++++|..+...+ ...++..+++..
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~---g~~~~~~lr~~~-- 109 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMD---GITCLSNIMEFD-- 109 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSC---HHHHHHHHHHHC--
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCcc---HHHHHHHHHhhC--
Confidence 346899999999999999999999999998 99999999998876544688999998765432 233455565543
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
...++++++............ ..+...++.||+....+...+..++
T Consensus 110 ~~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 110 KNARVIMISALGKEQLVKDCL-IKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp TTCCEEEEESCCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred CCCcEEEEeccCcHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 233455554433222211111 2256679999999999999888765
No 152
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.45 E-value=0.00031 Score=73.30 Aligned_cols=97 Identities=16% Similarity=0.164 Sum_probs=72.4
Q ss_pred cCCCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccc
Q 003018 706 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 785 (856)
Q Consensus 706 ~~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~ 785 (856)
.+.+++|||||||+.++..+...|..+|+.|..+.+ .....||++++|..||..++.+
T Consensus 8 ~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~--------~~~~~~~~ii~d~~~~~~~~~~-------------- 65 (254)
T 2ayx_A 8 GLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG--------QEPTPEDVLITDEVVSKKWQGR-------------- 65 (254)
T ss_dssp TTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS--------CCCCTTCEEEEESSCSCCCCSS--------------
T ss_pred ccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC--------CCCCcCcEEEEcCCCccccccc--------------
Confidence 356889999999999999999999999999988874 1235799999999999764421
Q ss_pred cccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 786 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 786 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
.++.++....... ...+...++.||+...+|...+.+++
T Consensus 66 --------------------~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~ 104 (254)
T 2ayx_A 66 --------------------AVVTFCRRHIGIP----LEKAPGEWVHSVAAPHELPALLARIY 104 (254)
T ss_dssp --------------------EEEEECSSCCCSC----CTTSTTEEEECSSCCSHHHHHHHHHH
T ss_pred --------------------eEEEEecccCCCc----ccccCCceeccccchHHHHHHHHHHh
Confidence 1344444322110 12345689999999999999888765
No 153
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=97.37 E-value=0.0015 Score=59.25 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=83.6
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......++..|+.+..+.+..+++..+.. ..++++++|..+...+ ...++..+++.......
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~--~~~dlvllD~~~p~~~---g~~~~~~l~~~~~~~~~ 77 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE--FTPDLIVLXIMMPVMD---GFTVLKKLQEKEEWKRI 77 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT--BCCSEEEECSCCSSSC---HHHHHHHHHTSTTTTTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCCCCc---HHHHHHHHHhcccccCC
Confidence 479999999999999999999999999999999999998865 4578999987765433 23455666654433334
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
++++++........... ...+...++.||+....+...+++.+
T Consensus 78 pii~~s~~~~~~~~~~~-~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 78 PVIVLTAKGGEEDESLA-LSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp CEEEEESCCSHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEecCCchHHHHHH-HhcChhhhccCCCCHHHHHHHHHHHh
Confidence 45555443322211111 12256689999999999999888765
No 154
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=97.36 E-value=0.00094 Score=69.21 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=84.4
Q ss_pred ceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhc
Q 003018 524 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 603 (856)
Q Consensus 524 GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~ 603 (856)
||+|++.+|+.....+. .......+++++|+++..+......|+..|+.|..+.+..+++..+..
T Consensus 1 Gs~~~~~~~~~~~~~~~---------------~~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~ 65 (250)
T 3r0j_A 1 GTHMRKGVDLVTAGTPG---------------ENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE 65 (250)
T ss_dssp ----------------------------------CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred CCccccccceeeccCCC---------------CCCCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh
Confidence 89999999875432211 111235789999999999999999999999999999999999988765
Q ss_pred CCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHH
Q 003018 604 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 683 (856)
Q Consensus 604 ~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~ 683 (856)
. .++++++|..+...+ ...++..+++... ..++++++........... -..+...++.||+....+...++.
T Consensus 66 ~--~~dlvllD~~lp~~~---g~~~~~~lr~~~~--~~~ii~lt~~~~~~~~~~~-~~~Ga~~yl~Kp~~~~~L~~~i~~ 137 (250)
T 3r0j_A 66 T--RPDAVILDVXMPGMD---GFGVLRRLRADGI--DAPALFLTARDSLQDKIAG-LTLGGDDYVTKPFSLEEVVARLRV 137 (250)
T ss_dssp H--CCSEEEEESCCSSSC---HHHHHHHHHHTTC--CCCEEEEECSTTHHHHHHH-HTSTTCEEEESSCCHHHHHHHHHH
T ss_pred C--CCCEEEEeCCCCCCC---HHHHHHHHHhcCC--CCCEEEEECCCCHHHHHHH-HHcCCcEEEeCCCCHHHHHHHHHH
Confidence 3 478999987765432 2335556655422 3344444433222111111 123567899999999999999888
Q ss_pred Hhc
Q 003018 684 AMG 686 (856)
Q Consensus 684 ~~~ 686 (856)
.+.
T Consensus 138 ~~~ 140 (250)
T 3r0j_A 138 ILR 140 (250)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 155
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=97.26 E-value=0.00032 Score=73.38 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=38.9
Q ss_pred EEEEEecCCCCChhhHhhhcCccccCCC----------CCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCC
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTPFMQVGP----------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 522 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~pF~q~d~----------s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g 522 (856)
.|.|.|||+||+++++...|..+.+... ......|..|+|+.-+..+ .-++.|.|...
T Consensus 116 ~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~v----a~~v~V~Sr~~ 183 (264)
T 1yc1_A 116 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITKHN 183 (264)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHH----EEEEEEEEECT
T ss_pred EEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccC----CCEEEEEEecC
Confidence 4899999999999998777765543221 1112345679999866543 45677877754
No 156
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=97.26 E-value=0.0023 Score=59.02 Aligned_cols=121 Identities=17% Similarity=0.286 Sum_probs=82.5
Q ss_pred cCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhc-CC
Q 003018 559 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL-GC 637 (856)
Q Consensus 559 ~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~-~~ 637 (856)
+.+.+++++|+++..+......|+.+|+.+..+.+..+++..+... . +++++|..+...+. ..+...+++. ..
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~-dlvllD~~lp~~~g---~~~~~~l~~~~~~ 78 (136)
T 1dcf_A 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE--H-KVVFMDVCMPGVEN---YQIALRIHEKFTK 78 (136)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT--C-SEEEEECCSSTTTT---THHHHHHHHHHC-
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc--C-CEEEEeCCCCCCcH---HHHHHHHHHhhhh
Confidence 4578999999999999999999999999999999999999877542 3 88999887654333 2234444422 11
Q ss_pred C--CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 638 G--FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 638 ~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
. ..+.+++++............ ..+...++.||++...+...++..+.
T Consensus 79 ~~~~~~~ii~~s~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 79 QRHQRPLLVALSGNTDKSTKEKCM-SFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp CCSCCCEEEEEESCCSHHHHHHHH-HTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred ccCCCceEEEEeCCCCHHHHHHHH-HcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 1 123444454433322111111 12566899999999999999988764
No 157
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=97.25 E-value=5.5e-05 Score=79.35 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=37.0
Q ss_pred EEEEEecCCCCChhhHhhhcCccccCCC---------------CCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCC
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTPFMQVGP---------------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 522 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~pF~q~d~---------------s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g 522 (856)
.|.|.|||+||+++.+...|..+.+... ......|..|+|+.-+..++ ..+.|.|...
T Consensus 76 ~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va----~~v~V~Sk~~ 148 (269)
T 1qy5_A 76 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA----DKVIVTSKHN 148 (269)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTE----EEEEEEEECT
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhcc----ceEEEEEEec
Confidence 5899999999999998766644322100 01112356899997665443 5677777654
No 158
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=97.22 E-value=0.00048 Score=63.53 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=78.7
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
+.+|+|+|||++..+......|+.+|++|. .++++.+|+..+.. ..+++++.|..+...++. .....+++..
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~--~~~DlvllDi~mP~~~G~---el~~~lr~~~-- 79 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARK--GQFDIAIIDVNLDGEPSY---PVADILAERN-- 79 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH--CCSSEEEECSSSSSCCSH---HHHHHHHHTC--
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--CCCCEEEEecCCCCCCHH---HHHHHHHcCC--
Confidence 457899999999999999999999999974 78999999998876 468999999888765543 3445555421
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHH
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 684 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~ 684 (856)
.|. + +.++.+.... ....+...++.||++...|...+.+.
T Consensus 80 -ipv-I-~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~ 119 (123)
T 2lpm_A 80 -VPF-I-FATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQI 119 (123)
T ss_dssp -CSS-C-CBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTT
T ss_pred -CCE-E-EEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHH
Confidence 132 2 2233222111 11223456899999999998877543
No 159
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=97.18 E-value=0.0032 Score=58.25 Aligned_cols=121 Identities=17% Similarity=0.290 Sum_probs=86.6
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..+++++|+++..+......|...|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++......
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~~~~ 80 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARR--PYAAMTVDLNLPDQD---GVSLIRALRRDSRTRD 80 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHS--CCSEEEECSCCSSSC---HHHHHHHHHTSGGGTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhCcccCC
Confidence 46899999999999999999999999999999999999988664 478899987764432 2345566665333334
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.++++++...............+...++.||+....+...+..++.
T Consensus 81 ~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 81 LAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp CEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 4555554433222211022233667899999999999999988875
No 160
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=97.17 E-value=0.003 Score=57.38 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=84.6
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++......
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~---g~~~~~~l~~~~~~~~ 77 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTR--GYDAVFIDLNLPDTS---GLALVKQLRALPMEKT 77 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSB---HHHHHHHHHHSCCSSC
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhhhccCC
Confidence 36899999999999999999999999999999999999988764 478999988765432 3345566666533334
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.++++++....... . .....+...++.||+....+.+.+....+
T Consensus 78 ~~ii~~s~~~~~~~-~-~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 78 SKFVAVSGFAKNDL-G-KEACELFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp CEEEEEECC-CTTC-C-HHHHHHCSEEEESSCCHHHHHHHHHHHC-
T ss_pred CCEEEEECCcchhH-H-HHHHHhhHHheeCCCCHHHHHHHHHHhhc
Confidence 45555544333222 1 11112455799999999999999987654
No 161
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=97.13 E-value=0.0072 Score=55.86 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=85.3
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
...+++++|+++..+......|+..|+++..+.+..+++..+... .++++++|......+ ...++..+++.....
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~~~ 80 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKG--FSGVVLLDIMMPGMD---GWDTIRAILDNSLEQ 80 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTC--CCEEEEEESCCSSSC---HHHHHHHHHHTTCCT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhhcccC
Confidence 357899999999999999999999999999999999999988764 478999987664322 234556666533333
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..++++++........... ...+...++.||+....+...+...+.
T Consensus 81 ~~pii~~s~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 81 GIAIVMLTAKNAPDAKMIG-LQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp TEEEEEEECTTCCCCSSTT-GGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHH-HhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 3455555443322221111 122455789999999999998887764
No 162
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=97.10 E-value=0.00016 Score=74.56 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=38.8
Q ss_pred EEEEEecCCCCChhhHhhhcCccccCCCC------------CCCCCCcccchHHHHHHHHHHcCCEEEEEEeCC
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTPFMQVGPS------------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 522 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~pF~q~d~s------------~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g 522 (856)
.|.|.|+|+||+++++...|..+.+.... .....|..|+||.-+.. .+-++.|.|...
T Consensus 95 ~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~----~~~~v~V~Sr~~ 164 (235)
T 2ior_A 95 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI----VADKVTVRTRAA 164 (235)
T ss_dssp EEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGG----TEEEEEEEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHh----CcCeEEEEEecC
Confidence 48999999999999999888766543210 01123568999974432 344677777653
No 163
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=97.08 E-value=0.0027 Score=58.00 Aligned_cols=123 Identities=16% Similarity=0.249 Sum_probs=83.7
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
.+++++++|+++..+...+..|+..|+. +..+.+..+++..+... ..++++++|..+...+ ...++..+++....
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~~~---g~~~~~~lr~~~~~ 79 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEMN---GLDLVKKVRSDSRF 79 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSSSC---HHHHHHHHHTSTTC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCC---HHHHHHHHHhcCCC
Confidence 4578999999999999999999999995 88899999998877543 3468888887764432 23455566654333
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
...++++++........... ...+...++.||+....+...++..++.
T Consensus 80 ~~~pii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 80 KEIPIIMITAEGGKAEVITA-LKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp TTCCEEEEESCCSHHHHHHH-HHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred CCCeEEEEeCCCChHHHHHH-HHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 33445555443322111111 1125668999999999999999888753
No 164
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.03 E-value=0.00069 Score=75.08 Aligned_cols=50 Identities=28% Similarity=0.495 Sum_probs=36.8
Q ss_pred EEEEEecCCCCChhh--------HhhhcCccccCC---CCCCCCCCc-ccchHHHHHHHHHH
Q 003018 461 IVSVEDTGQGIPLEA--------QSRIFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGR 510 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~--------~~~iF~pF~q~d---~s~~~~~~G-tGLGLsI~k~lv~~ 510 (856)
.|+|.|+|.|||.+. .+.+|..|+... ....+..+| .|.||+.+..+.+.
T Consensus 64 ~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~~ 125 (390)
T 1s16_A 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKR 125 (390)
T ss_dssp CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHHHHhhcc
Confidence 389999999999998 678898876542 111222345 89999999988753
No 165
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=97.03 E-value=0.0036 Score=59.33 Aligned_cols=122 Identities=17% Similarity=0.165 Sum_probs=86.4
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
+..+++++|+++..+......|+..|+.+..+.+..+++..+.. ..++++++|..+...+ ...++..++......
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~~~---g~~~~~~lr~~~~~~ 80 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSL--TRPDLIISDVLMPEMD---GYALCRWLKGQPDLR 80 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTT--CCCSEEEEESCCSSSC---HHHHHHHHHHSTTTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCC---HHHHHHHHHhCCCcC
Confidence 35789999999999999999999999999999999999998865 3588999998765433 234556666544333
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
..++++++........... ...+...++.||+....+...+...+..
T Consensus 81 ~~pii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 81 TIPVILLTILSDPRDVVRS-LECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp TSCEEEEECCCSHHHHHHH-HHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 3445555433322111111 1125668999999999999999888753
No 166
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=97.03 E-value=0.0095 Score=55.17 Aligned_cols=120 Identities=16% Similarity=0.226 Sum_probs=83.0
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.+.+++++|+++..+......|+..|+.+..+.+..+++..+... ..++++++|..+... .....++..+++. .
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~--~~g~~~~~~l~~~---~ 77 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEG--MDGVQTALAIQQI---S 77 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSS--CCHHHHHHHHHHH---C
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCC--CCHHHHHHHHHhC---C
Confidence 457899999999999999999999999999999999999888653 457899998776431 1123344555553 2
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..++++++........... ...+...++.||+....+...+..++.
T Consensus 78 ~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 78 ELPVVFLTAHTEPAVVEKI-RSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp CCCEEEEESSSSCCCCGGG-GGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHH-HhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3345555443332222111 122556899999999999998887764
No 167
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=97.01 E-value=0.011 Score=53.82 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=84.0
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..+++++|+++..+......++ .|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++......
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~~~~ 77 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAH--PPDVLISDVNMDGMD---GYALCGHFRSEPTLKH 77 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSC---HHHHHHHHHHSTTTTT
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHhCCccCC
Confidence 3689999999999999999998 999999999999999888764 478899987764322 3345566666543334
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
.++++++....... ......+...++.||+....+...+...+..
T Consensus 78 ~pii~~s~~~~~~~--~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 78 IPVIFVSGYAPRTE--GPADQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp CCEEEEESCCC-------TTSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHhH--HHHhhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 45555544333222 2222335668999999999999999988753
No 168
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=96.99 E-value=0.0039 Score=57.70 Aligned_cols=121 Identities=13% Similarity=0.134 Sum_probs=84.6
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++......
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~---g~~~~~~lr~~~~~~~ 78 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKN--LPDALICDVLLPGID---GYTLCKRVRQHPLTKT 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHHSGGGTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHcCCCcCC
Confidence 46899999999999999999999999999999999999887653 478899987765433 2334555655432223
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
.++++++........... ...+...++.||+....+...+...+..
T Consensus 79 ~pii~~t~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 79 LPILMLTAQGDISAKIAG-FEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp CCEEEEECTTCHHHHHHH-HHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred ccEEEEecCCCHHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 344444433222111111 1125567999999999999999888753
No 169
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=96.98 E-value=0.0085 Score=63.61 Aligned_cols=116 Identities=14% Similarity=0.225 Sum_probs=85.3
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeecccc-ccCCchhHHHHHHHhhcCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~-~~~~~~~~~~~~~~~~~~~~ 638 (856)
+.+++++||++..+.+....|+.+|+.|. .+.++.+++..+... .++++++|..+. ..++... ...++...
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~--~~dlvl~D~~MPd~mdG~e~---~~~ir~~~-- 232 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRR--TPGLVLADIQLADGSSGIDA---VKDILGRM-- 232 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHC--CCSEEEEESCCTTSCCTTTT---THHHHHHT--
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhC--CCCEEEEcCCCCCCCCHHHH---HHHHHhcC--
Confidence 45899999999999999999999999999 999999999998764 489999998887 4444332 33444443
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
..++++++.. +. ..... ...|...++.||+....|...+...+..
T Consensus 233 -~~piI~lT~~-~~-~~~~~-~~~G~~~~l~KP~~~~~L~~~i~~~l~~ 277 (286)
T 3n0r_A 233 -DVPVIFITAF-PE-RLLTG-ERPEPTFLITKPFQPETVKAAIGQALFF 277 (286)
T ss_dssp -TCCEEEEESC-GG-GGCCS-SSCCCSSEEESSCCHHHHHHHHHHHHHH
T ss_pred -CCCEEEEeCC-HH-HHHHH-HhCCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 3334444332 22 12222 2336678999999999999999988854
No 170
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=96.97 E-value=0.0042 Score=57.01 Aligned_cols=122 Identities=14% Similarity=0.155 Sum_probs=86.2
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCc--EEEEeCCHHHHHHHHhcC-----CCcceEEEeeccccccCCchhHHHHHHHh
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASG-----SKIINMILVEQEVWEKDTSVSTLFVNNLR 633 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~~-----~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 633 (856)
+++++++|+++..+......|+..|+ .+..+.+..+++..+... ...++++++|..+...+ ...++..++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~---g~~~~~~l~ 78 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKD---GREVLAEIK 78 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSC---HHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCccc---HHHHHHHHH
Confidence 57899999999999999999999998 999999999999988763 25689999997765322 234556666
Q ss_pred hcCCCCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 634 KLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 634 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
+.......++++++............ ..+...++.||+....+...+.+++.
T Consensus 79 ~~~~~~~~pii~ls~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 79 SDPTLKRIPVVVLSTSINEDDIFHSY-DLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp HSTTGGGSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cCcccccccEEEEecCCcHHHHHHHH-HhchhheecCCCCHHHHHHHHHHHHH
Confidence 54322334455555443322111111 12566899999999999998887764
No 171
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=96.95 E-value=0.0031 Score=58.46 Aligned_cols=122 Identities=12% Similarity=0.137 Sum_probs=86.1
Q ss_pred CcEEEEeCCchhhhHHHHHHHHH-hCcEEEEeCCHHHHHHHHhcCCCcceEEEeecccc-ccCCchhHHHHHHHhhcCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQR-LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~-~~~~~~~~~~~~~~~~~~~~ 638 (856)
..+++++|+++..+......|+. .|+++..+.+..+++..+... ..++++++|..+. .. ....++..+++....
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~---~g~~~~~~l~~~~~~ 79 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDL-DSITLIIMDIAFPVEK---EGLEVLSAIRNNSRT 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTC-CCCSEEEECSCSSSHH---HHHHHHHHHHHSGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCCCC---cHHHHHHHHHhCccc
Confidence 46899999999999999999999 999999999999999887653 4678899987654 32 223355566653333
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
...++++++............ ..+...++.||+....+...+...+..
T Consensus 80 ~~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 80 ANTPVIIATKSDNPGYRHAAL-KFKVSDYILKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp TTCCEEEEESCCCHHHHHHHH-HSCCSEEEESSCCTTHHHHHHHHHHCC
T ss_pred CCCCEEEEeCCCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 344555554433222111111 225668999999999999999988854
No 172
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=96.91 E-value=0.0041 Score=58.13 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=80.0
Q ss_pred ccCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhc--
Q 003018 558 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL-- 635 (856)
Q Consensus 558 ~~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~-- 635 (856)
..++++++++|+++..+......|+.+|+.+..+.+..+++..+.. ..++++++|..+...+. ..++..++..
T Consensus 11 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~~~g---~~~~~~lr~~~~ 85 (143)
T 3m6m_D 11 RVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE--EDYDAVIVDLHMPGMNG---LDMLKQLRVMQA 85 (143)
T ss_dssp ----CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCH---HHHHHHHHHHHH
T ss_pred ccccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCH---HHHHHHHHhchh
Confidence 3567899999999999999999999999999999999999988765 35789999987654332 2344445432
Q ss_pred CCCCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 636 GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 636 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
......++++++........... ...+...++.||+....+...+.+..
T Consensus 86 ~~~~~~pii~~s~~~~~~~~~~~-~~~Ga~~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 86 SGMRYTPVVVLSADVTPEAIRAC-EQAGARAFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp TTCCCCCEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHC
T ss_pred ccCCCCeEEEEeCCCCHHHHHHH-HHcChhheeeCCCCHHHHHHHHHHHH
Confidence 11222344444433222111111 11256689999999999999988765
No 173
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=96.90 E-value=0.01 Score=53.30 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=83.2
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeecccc-ccCCchhHHHHHHHhhcCCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
.+++++|+++..+......|+..|+++..+.+..+++..+... .++++++|.... ..+ ...++..+++......
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~d~~~~~~~~---g~~~~~~l~~~~~~~~ 80 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRD--RPDLVVLAVDLSAGQN---GYLICGKLKKDDDLKN 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHH--CCSEEEEESBCGGGCB---HHHHHHHHHHSTTTTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhc--CCCEEEEeCCCCCCCC---HHHHHHHHhcCccccC
Confidence 5899999999999999999999999999999999999887653 478888887654 222 2335566665432333
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.+++++ ........... ...+...++.||+....+...+...+.
T Consensus 81 ~~ii~~-~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 81 VPIVII-GNPDGFAQHRK-LKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp SCEEEE-ECGGGHHHHHH-STTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCEEEE-ecCCchhHHHH-HHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 444444 33222211111 223566899999999999999988764
No 174
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=96.90 E-value=0.006 Score=57.38 Aligned_cols=121 Identities=11% Similarity=0.183 Sum_probs=85.9
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCc--EEEEeCCHHHHHHHHhc-------CCCcceEEEeeccccccCCchhHHHHHH
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIAS-------GSKIINMILVEQEVWEKDTSVSTLFVNN 631 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~-------~~~~~~~~l~d~~~~~~~~~~~~~~~~~ 631 (856)
..+++++|+++..+......|+..|. .+..+.+..+++..+.. ....++++++|..+...+ ...++..
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~---g~~~~~~ 80 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMT---GIDILKL 80 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSB---HHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCc---HHHHHHH
Confidence 46899999999999999999999999 89999999999998852 346789999998765432 3345666
Q ss_pred HhhcCCCCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 632 LRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 632 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
+++.......++++++............ ..+...++.||+....+...+.+..
T Consensus 81 lr~~~~~~~~pii~~t~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 81 VKENPHTRRSPVVILTTTDDQREIQRCY-DLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp HHHSTTTTTSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred HHhcccccCCCEEEEecCCCHHHHHHHH-HCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 6664333344555554433322111111 2256689999999999999888765
No 175
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=96.88 E-value=0.0042 Score=57.64 Aligned_cols=124 Identities=11% Similarity=0.156 Sum_probs=87.6
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCc--EEEEeCCHHHHHHHHhc---CCCcceEEEeeccccccCCchhHHHHHHHhh
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIAS---GSKIINMILVEQEVWEKDTSVSTLFVNNLRK 634 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~---~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~ 634 (856)
+..+++++|+++..+......+...|. .+..+.+..+++..+.. ....++++++|..+...+ ...++..+++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~---g~~~~~~l~~ 84 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGIN---GWELIDLFKQ 84 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSC---HHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCC---HHHHHHHHHH
Confidence 346899999999999999999999999 99999999999988765 225689999998765432 2335555665
Q ss_pred cC--CCCCceEEEEeccCCccccCCCCCCCC-CCceeccCCchHHHHHHHHHHhcC
Q 003018 635 LG--CGFQSKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 635 ~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
.. .....++++++.............. + ...++.||+....+...+.+....
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~-g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 85 HFQPMKNKSIVCLLSSSLDPRDQAKAEAS-DWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp HCGGGTTTCEEEEECSSCCHHHHHHHHHC-SSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred hhhhccCCCeEEEEeCCCChHHHHHHHhc-CCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 32 2233455555443332222222222 4 668999999999999999988754
No 176
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=96.83 E-value=0.008 Score=54.09 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=81.5
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++.. ..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlii~D~~~p~~~---g~~~~~~lr~~~---~~ 74 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEEL--QPDLILLDIMLPNKD---GVEVCREVRKKY---DM 74 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT--CCSEEEEETTSTTTH---HHHHHHHHHTTC---CS
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCC---HHHHHHHHHhcC---CC
Confidence 5799999999999999999999999999999999999888653 578899987765432 233455555432 33
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
++++++........... ...+...++.||+....+...++..+.
T Consensus 75 ~ii~~t~~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 75 PIIMLTAKDSEIDKVIG-LEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp CEEEEEESSCHHHHHHH-HHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred CEEEEECCCChHHHHHH-HhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 44444433322111111 122566899999999999998887653
No 177
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=96.82 E-value=0.0085 Score=54.60 Aligned_cols=121 Identities=15% Similarity=0.172 Sum_probs=83.8
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
++.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..+++.....
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~~~ 79 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTF--EPAIMTLDLSMPKLD---GLDVIRSLRQNKVAN 79 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT--CCSEEEEESCBTTBC---HHHHHHHHHTTTCSS
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCC---HHHHHHHHHhcCccC
Confidence 357899999999999999999999999999999999999887654 468889887765432 234555666543323
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
.+.++++... ........ ...+...++.||+....+...+......
T Consensus 80 ~~~ii~~~~~-~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 80 QPKILVVSGL-DKAKLQQA-VTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp CCEEEEECCS-CSHHHHHH-HHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred CCeEEEEeCC-ChHHHHHH-HHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 3444444332 22111111 1225668999999999999999887753
No 178
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=96.78 E-value=0.0097 Score=54.59 Aligned_cols=121 Identities=11% Similarity=0.164 Sum_probs=85.7
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..+++++|+++..+......|+..|+++..+.+..+++..+... ..++++++|..+...+ ...++..+++.. ...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~---g~~~~~~l~~~~-~~~ 81 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ-KRIGLMITDLRMQPES---GLDLIRTIRASE-RAA 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSC---HHHHHHHHHTST-TTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC-CCCcEEEEeccCCCCC---HHHHHHHHHhcC-CCC
Confidence 46899999999999999999999999999999999998887653 3478899987765432 234556666543 223
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
.++++++............ ..+...++.||+....+...+++....
T Consensus 82 ~~ii~~s~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 82 LSIIVVSGDTDVEEAVDVM-HLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp CEEEEEESSCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred CCEEEEeCCCChHHHHHHH-hCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 4455554433321111111 225668999999999999999988754
No 179
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=96.77 E-value=0.011 Score=54.72 Aligned_cols=124 Identities=13% Similarity=0.184 Sum_probs=86.2
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCc--EEEEeCCHHHHHHHHhcC----CCcceEEEeeccccccCCchhHHHHHHHhh
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASG----SKIINMILVEQEVWEKDTSVSTLFVNNLRK 634 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~~----~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~ 634 (856)
..+++++|+++..+......|...|. .+..+.+..+++..+... ...++++++|......+ ...++..+++
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~---g~~~~~~l~~ 83 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMN---GIEFLKELRD 83 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSC---HHHHHHHHTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCC---HHHHHHHHHc
Confidence 46899999999999999999999998 999999999999988752 25688999997664322 2344555655
Q ss_pred cCCCCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCC
Q 003018 635 LGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 688 (856)
Q Consensus 635 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~ 688 (856)
.......++++++........... ...+...++.||+....+...++...+.+
T Consensus 84 ~~~~~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~L~~~~~~~~~~~ 136 (143)
T 2qvg_A 84 DSSFTDIEVFVLTAAYTSKDKLAF-ESLNIRGHLIKPLDYGEAIKLFWILQSME 136 (143)
T ss_dssp SGGGTTCEEEEEESCCCHHHHHHH-TTTTCCEEEESSCCHHHHHHHHHHHHHC-
T ss_pred CccccCCcEEEEeCCCCHHHHHHH-HhcCCCeEEECCCCHHHHHHHHHHHHHhh
Confidence 432233455555443332221111 22356789999999999999988766543
No 180
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=96.75 E-value=0.0072 Score=55.00 Aligned_cols=120 Identities=12% Similarity=0.238 Sum_probs=80.3
Q ss_pred cCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 559 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 559 ~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
..+.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..+++..
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~-- 77 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF--TPDLMICDIAMPRMN---GLKLLEHIRNRG-- 77 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTC--CCSEEEECCC--------CHHHHHHHHHTT--
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCC---HHHHHHHHHhcC--
Confidence 4578999999999999999999999999999999999999888543 478999987765433 233455555532
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCC-chHHHHHHHHHHhc
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMG 686 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~-~~~~l~~~l~~~~~ 686 (856)
...++++++............ ..+...++.||+ ....+...++.++.
T Consensus 78 ~~~~ii~~t~~~~~~~~~~~~-~~g~~~~l~KP~~~~~~l~~~i~~~l~ 125 (130)
T 3eod_A 78 DQTPVLVISATENMADIAKAL-RLGVEDVLLKPVKDLNRLREMVFACLY 125 (130)
T ss_dssp CCCCEEEEECCCCHHHHHHHH-HHCCSEEEESCC---CHHHHHHHHHHC
T ss_pred CCCCEEEEEcCCCHHHHHHHH-HcCCCEEEeCCCCcHHHHHHHHHHHhc
Confidence 234455554433222111111 125667999999 88899988888774
No 181
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=96.75 E-value=0.0082 Score=55.77 Aligned_cols=123 Identities=17% Similarity=0.154 Sum_probs=85.8
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCc--EEEEeCCHHHHHHHHhcCC--------CcceEEEeeccccccCCchhHHHH
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASGS--------KIINMILVEQEVWEKDTSVSTLFV 629 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~~~--------~~~~~~l~d~~~~~~~~~~~~~~~ 629 (856)
.+.+++++|+++..+......|+..|+ .+..+.+..+++..+.... ..++++++|..+...+ ...++
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~---g~~~~ 81 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTD---GREVL 81 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSC---HHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCC---HHHHH
Confidence 457899999999999999999999999 8999999999999887532 5688999987764322 23455
Q ss_pred HHHhhcCCCCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 630 NNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 630 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..++........++++++............ ..+...++.||+....+...+...+.
T Consensus 82 ~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 82 QEIKQDEVLKKIPVVIMTTSSNPKDIEICY-SYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp HHHTTSTTGGGSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHhCcccCCCeEEEEeCCCCHHHHHHHH-HCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 566554322334455554433321111111 22566899999999999998887763
No 182
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=96.74 E-value=0.005 Score=61.76 Aligned_cols=167 Identities=19% Similarity=0.223 Sum_probs=85.3
Q ss_pred HHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEeCCchhhhHHHHHHHHHhCc
Q 003018 507 LVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 586 (856)
Q Consensus 507 lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lvvd~~~~~~~v~~~~l~~~g~ 586 (856)
-+.+|||.|+|+|++|+||+|+|++|+......... ..........+.++|+||+++..+......|+.+|+
T Consensus 15 ~~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~--------~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~ 86 (206)
T 3mm4_A 15 PRGSHMASTDSESETRVKSVRTGRKPIGNPEDEQET--------SKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGV 86 (206)
T ss_dssp C-----------------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred cccccCCceeeeccCCCcceeeeccCCCCCcccccc--------cCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 367899999999999999999999998654322111 111122345788999999999999999999999999
Q ss_pred -EEEEeCCHHHHHHHHhcC-----------CCcceEEEeeccccccCCchhHHHHHHHhhcCC--CCCceEEEEeccCCc
Q 003018 587 -QVEVVSDQLQCLSQIASG-----------SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC--GFQSKLFLLANSISS 652 (856)
Q Consensus 587 -~v~~~~~~~~~~~~~~~~-----------~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~ 652 (856)
.|..+.+..+++..+... ...++++++|..+...+ ...++..+++... ....++++++.....
T Consensus 87 ~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~---G~el~~~lr~~~~~~~~~~piI~ls~~~~~ 163 (206)
T 3mm4_A 87 SEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMD---GYEATREIRKVEKSYGVRTPIIAVSGHDPG 163 (206)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSC---HHHHHHHHHHHHHTTTCCCCEEEEESSCCC
T ss_pred CeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCC---HHHHHHHHHhhhhhcCCCCcEEEEECCCCc
Confidence 999999999999987653 34689999998775433 2334555555321 123344444443211
Q ss_pred cccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 653 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 653 ~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..........+...++.||+. .|...++..+.
T Consensus 164 ~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~ 195 (206)
T 3mm4_A 164 SEEARETIQAGMDAFLDKSLN--QLANVIREIES 195 (206)
T ss_dssp HHHHHHHHHHTCSEEEETTCT--THHHHHHHHC-
T ss_pred HHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHh
Confidence 111111111256679999998 78888877764
No 183
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=96.73 E-value=0.02 Score=52.83 Aligned_cols=120 Identities=16% Similarity=0.205 Sum_probs=84.0
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..++........
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~ 78 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNAT--PPDLVLLDIMMEPMD---GWETLERIKTDPATRDI 78 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHHSTTTTTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhcc--CCCEEEEeCCCCCCC---HHHHHHHHHcCcccCCC
Confidence 4799999999999999999999999999999999999887653 468999987764432 23455666654333334
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
++++++..... .......+.+...++.||+....+...+...+..
T Consensus 79 ~ii~ls~~~~~-~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 79 PVLMLTAKPLT-PEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp CEEEEESSCCC-HHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred CEEEEECCCCh-HHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 45544433221 1111122334568999999999999999888753
No 184
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=96.70 E-value=0.0092 Score=54.02 Aligned_cols=119 Identities=16% Similarity=0.291 Sum_probs=80.8
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCc-EEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
..+++++|+++..+......++..|+ .+..+.+..+++..+... .++++++|..+...+ ...+...+++.....
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~---g~~l~~~l~~~~~~~ 78 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNMD---GLELLKTIRAXXAMS 78 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTC--CCCEEEEESCCSSSC---HHHHHHHHHC--CCT
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhhcccC
Confidence 46799999999999999999999999 799999999999887653 478888887664432 233455666533223
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
..++++++............ ..+...++.||+....+...+.+.+
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~-~~ga~~~l~KP~~~~~l~~~i~~~~ 123 (128)
T 1jbe_A 79 ALPVLMVTAEAKKENIIAAA-QAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp TCCEEEEESSCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCcEEEEecCccHHHHHHHH-HhCcCceeecCCCHHHHHHHHHHHH
Confidence 34445444433221111111 1255679999999999998887765
No 185
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=96.69 E-value=0.0068 Score=56.49 Aligned_cols=121 Identities=13% Similarity=0.169 Sum_probs=85.5
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
...+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..+++.....
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~~~ 81 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKT--HPHLIITEANMPKIS---GMDLFNSLKKNPQTA 81 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSC---HHHHHHHHHTSTTTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcC--CCCEEEEcCCCCCCC---HHHHHHHHHcCcccC
Confidence 467899999999999999999999999999999999999887654 478899987664322 234556666533333
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..++++++........... ...+...++.||+....+...+..++.
T Consensus 82 ~~pii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 82 SIPVIALSGRATAKEEAQL-LDMGFIDFIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp TSCEEEEESSCCHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHH-HhCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 4455555543332111111 112566899999999999999988775
No 186
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=96.69 E-value=0.011 Score=54.48 Aligned_cols=122 Identities=6% Similarity=0.158 Sum_probs=85.3
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHH-hCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQR-LGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~-~g~~-v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 637 (856)
...+++++|+++..+......|+. .|+. +..+.+..+++..+... .++++++|......+ ...++..++....
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~ 81 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTV--KPDVVMLDLMMVGMD---GFSICHRIKSTPA 81 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHT--CCSEEEEETTCTTSC---HHHHHHHHHTSTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhc--CCCEEEEecccCCCc---HHHHHHHHHhCcc
Confidence 357899999999999999999999 9999 99999999999888764 478899987664322 2335556665333
Q ss_pred CCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 638 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 638 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
....++++++............ ..+...++.||+....+...+..++..
T Consensus 82 ~~~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 82 TANIIVIAMTGALTDDNVSRIV-ALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp TTTSEEEEEESSCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEeCCCCHHHHHHHH-hcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 3344555554433322111111 225668999999999999999988753
No 187
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=96.69 E-value=0.025 Score=51.97 Aligned_cols=118 Identities=16% Similarity=0.250 Sum_probs=81.7
Q ss_pred ccCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCC
Q 003018 558 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637 (856)
Q Consensus 558 ~~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 637 (856)
...+.+++++|+++..+......|+..|+.+..+.+..+++..+... ..++++++|..+...+ ...++..++..
T Consensus 12 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~~~---g~~~~~~l~~~-- 85 (138)
T 2b4a_A 12 HMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQL-STCDLLIVSDQLVDLS---IFSLLDIVKEQ-- 85 (138)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGG-GSCSEEEEETTCTTSC---HHHHHHHHTTS--
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCC---HHHHHHHHHhh--
Confidence 34678999999999999999999999999999999999999887652 3478888887664322 23345556552
Q ss_pred CCCceEEEEe-ccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 638 GFQSKLFLLA-NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 638 ~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.....+++++ ....... .... ...++.||+....+...+...+.
T Consensus 86 ~~~~~ii~ls~~~~~~~~----~~~~-~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 86 TKQPSVLILTTGRHELIE----SSEH-NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp SSCCEEEEEESCC--CCC----CSSS-CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCCCCEEEEECCCCCHHH----HHHH-HHheeeCCCCHHHHHHHHHHHHH
Confidence 2234455554 3222211 1122 55789999999999999887654
No 188
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=96.69 E-value=0.0096 Score=55.15 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=85.0
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......|...|+.+..+.+..+++..+......++++++|......+ ...++..+++.. ...
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~---g~~~~~~l~~~~--~~~ 78 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLS---GMDILREIKKIT--PHM 78 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSC---HHHHHHHHHHHC--TTC
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCc---HHHHHHHHHHhC--CCC
Confidence 589999999999999999999999999999999999998876556789999997764322 233455555532 234
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
++++++............ ..+...++.||+....+...+..++.
T Consensus 79 ~ii~ls~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 79 AVIILTGHGDLDNAILAM-KEGAFEYLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp EEEEEECTTCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCHHHHHHHH-HhCcceeEeCCCCHHHHHHHHHHHHH
Confidence 455554433321111111 22566799999999999999887764
No 189
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=96.67 E-value=0.013 Score=52.52 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=80.1
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...+...++........
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~ 76 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAREN--KPDLILMDIQLPEIS---GLEVTKWLKEDDDLAHI 76 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEESBCSSSB---HHHHHHHHHHSTTTTTS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHcCccccCC
Confidence 4799999999999999999999999999999999999877653 478899987764332 23345566654322233
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
++++++........... ...+...++.||+....+...+...+.
T Consensus 77 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 77 PVVAVTAFAMKGDEERI-REGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp CEEEEC------CHHHH-HHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred cEEEEECCCCHHHHHHH-HhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 44444432221111111 112456799999999999999887764
No 190
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=96.66 E-value=0.013 Score=55.26 Aligned_cols=121 Identities=12% Similarity=0.239 Sum_probs=83.5
Q ss_pred cCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 559 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 559 ~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
.++.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..++....
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~- 78 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGT--SVQLVISDMRMPEMG---GEVFLEQVAKSYP- 78 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTS--CCSEEEEESSCSSSC---HHHHHHHHHHHCT-
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCC---HHHHHHHHHHhCC-
Confidence 4568999999999999999999999999999999999999888754 478999987664432 2334555555321
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..++++++...............+...++.||+....+...+..++.
T Consensus 79 -~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 79 -DIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp -TSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred -CCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHH
Confidence 33444444433221111111111256799999999999988877653
No 191
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=96.63 E-value=0.025 Score=52.17 Aligned_cols=117 Identities=15% Similarity=0.232 Sum_probs=81.5
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcC---C
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG---C 637 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~---~ 637 (856)
..+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++.. .
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~---g~~~~~~l~~~~~~~~ 84 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNR--QFDVIIMDIQMPVMD---GLEAVSEIRNYERTHN 84 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHS--CCSEEEECTTCCSSC---HHHHHHHHHHHHHHHT
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCc---HHHHHHHHHhhhhhcC
Confidence 35899999999999999999999999999999999999887653 478999987765433 223445554421 1
Q ss_pred CCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 638 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 638 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.....+++++........ ...+...++.||+....+...+..++.
T Consensus 85 ~~~~~ii~~s~~~~~~~~----~~~g~~~~l~KP~~~~~L~~~i~~~~~ 129 (140)
T 3c97_A 85 TKRASIIAITADTIDDDR----PGAELDEYVSKPLNPNQLRDVVLTCHS 129 (140)
T ss_dssp CCCCCCEEEESSCCSCCC----CCSSCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCceEEEEEeCccchhHH----HhCChhheEeCCCCHHHHHHHHHHHhC
Confidence 122333344332221111 133566899999999999999988774
No 192
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=96.62 E-value=0.012 Score=54.50 Aligned_cols=121 Identities=18% Similarity=0.286 Sum_probs=85.3
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcE--EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQ--VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 637 (856)
...+++++|+++..+......|+..|.. +..+.+..+++..+.. ..++++++|..+...+ ...++..+++...
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~---g~~~~~~lr~~~~ 78 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ--AKYDLIILDIGLPIAN---GFEVMSAVRKPGA 78 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT--CCCSEEEECTTCGGGC---HHHHHHHHHSSST
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhccc
Confidence 4578999999999999999999999987 8899999999988865 3578999987765432 2345566665433
Q ss_pred CCCceEEEEeccCCccccCCCCCCCCCCceeccCC-chHHHHHHHHHHhc
Q 003018 638 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMG 686 (856)
Q Consensus 638 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~-~~~~l~~~l~~~~~ 686 (856)
....++++++............ ..+...++.||+ ....+...+..++.
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~-~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 79 NQHTPIVILTDNVSDDRAKQCM-AAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp TTTCCEEEEETTCCHHHHHHHH-HTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHH-HcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 3344555555433322211111 225668999999 99999988887764
No 193
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=96.61 E-value=0.01 Score=54.45 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=81.7
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCc-EEEEeCCHHHHHHHHhc---CCCcceEEEeeccccccCCchhHHHHHHHhhcCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIAS---GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~-~v~~~~~~~~~~~~~~~---~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 637 (856)
.+++++|+++..+......|+..|+ .+..+.+..+++..+.. ....++++++|..+...++ ......+++...
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G---~~~~~~lr~~~~ 79 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDG---LLSTKMIRRDLG 79 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCH---HHHHHHHHHHSC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCh---HHHHHHHHhhcC
Confidence 5799999999999999999999997 48889999999987654 1245789999987754332 334555554322
Q ss_pred CCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 638 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 638 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
. ..++++++............ ..+...++.||+....+...+.+.+.
T Consensus 80 ~-~~~ii~lt~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 80 Y-TSPIVALTAFADDSNIKECL-ESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp C-CSCEEEEESCCSHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred C-CCCEEEEECCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 1 23444444332221111111 12566899999999999999988764
No 194
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=96.60 E-value=0.016 Score=52.17 Aligned_cols=119 Identities=16% Similarity=0.182 Sum_probs=82.6
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......++..|+.+..+.+..+++..+.. ..++++++|......+ ...++..+++.......
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~ 77 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLAWMLPGGS---GIQFIKHLRRESMTRDI 77 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS--SCCSEEEEESEETTEE---HHHHHHHHHTSTTTTTS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCC---HHHHHHHHHhCcccCCC
Confidence 479999999999999999999999999999999999877654 3578888887654322 23455666654322334
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
++++++........... ...+...++.||+....+...+...+.
T Consensus 78 ~ii~~s~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 78 PVVMLTARGEEEDRVRG-LETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp CEEEEEETTHHHHHHTT-CCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHH-HhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 45555443322222222 223566899999999999999887764
No 195
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=96.56 E-value=0.016 Score=53.26 Aligned_cols=118 Identities=12% Similarity=0.143 Sum_probs=79.5
Q ss_pred cccCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcC
Q 003018 557 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 636 (856)
Q Consensus 557 ~~~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~ 636 (856)
....+.+++++|+++..+......|+.+|+.+..+.+..+++..+... .+++++ + .+ .....++..++..
T Consensus 14 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----~--~~-~~g~~~~~~l~~~- 83 (137)
T 2pln_A 14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----V--SD-KNALSFVSRIKEK- 83 (137)
T ss_dssp -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHS--CCSEEE----E--CS-TTHHHHHHHHHHH-
T ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcC--CCCEEE----E--cC-ccHHHHHHHHHhc-
Confidence 345678999999999999999999999999999999999999887664 356555 1 11 1223455666654
Q ss_pred CCCCceEEEEeccCCccccCCCCCCCCCCceeccCC-chHHHHHHHHHHhc
Q 003018 637 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMG 686 (856)
Q Consensus 637 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~-~~~~l~~~l~~~~~ 686 (856)
....++++++........... ...+...++.||+ ....+...+..++.
T Consensus 84 -~~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 84 -HSSIVVLVSSDNPTSEEEVHA-FEQGADDYIAKPYRSIKALVARIEARLR 132 (137)
T ss_dssp -STTSEEEEEESSCCHHHHHHH-HHTTCSEEEESSCSCHHHHHHHHHHHTC
T ss_pred -CCCccEEEEeCCCCHHHHHHH-HHcCCceeeeCCCCCHHHHHHHHHHHHh
Confidence 113444554443322111111 1225668999999 99999999887764
No 196
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=96.52 E-value=0.048 Score=49.33 Aligned_cols=120 Identities=14% Similarity=0.206 Sum_probs=83.1
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccc-cCCchhHHHHHHHhhcCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE-KDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~-~~~~~~~~~~~~~~~~~~~ 638 (856)
...+++++|+++..+......|+..|+++..+.+..+++..+... ..++++++|..... .+ ...++..++...
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~---g~~~~~~l~~~~-- 77 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPD---GWQVARVAREID-- 77 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSC---HHHHHHHHHHHC--
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCC---HHHHHHHHHhcC--
Confidence 457899999999999999999999999999999999999888754 25788888876543 22 233455555542
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCC
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 688 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~ 688 (856)
...++++++............. ...++.||+....+...+.+++...
T Consensus 78 ~~~~ii~~s~~~~~~~~~~~~~---~~~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 78 PNMPIVYISGHAALEWASNGVP---DSIILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp TTCCEEEEESSCCTTHHHHSCT---TCEEEESSCCHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCccHHHHHhhcC---CcceEeCCCCHHHHHHHHHHHHhcC
Confidence 2344455544332221111111 1258999999999999999888643
No 197
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=96.51 E-value=0.041 Score=48.61 Aligned_cols=113 Identities=16% Similarity=0.259 Sum_probs=78.7
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCce
Q 003018 563 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (856)
+++++|+++..+......++..|+.+..+.+..+++..+... .++++++|..+...+ ...+...+++.. ...+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~--~~~~ 75 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSG--NYDLVILDIEMPGIS---GLEVAGEIRKKK--KDAK 75 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSC---HHHHHHHHHHHC--TTCC
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCC---HHHHHHHHHccC--CCCe
Confidence 799999999999999999999999999999999999887654 478899987764332 233455555532 2234
Q ss_pred EEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 643 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 643 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
+++++...... . .....+...++.||+....+...+...+
T Consensus 76 ii~~s~~~~~~-~--~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 76 IILLTAYSHYR-S--DMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EEEEESCGGGG-G--CGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred EEEEECCcchH-H--HHHhccccceEECCCCHHHHHHHHHHHh
Confidence 44444332211 1 1112345689999999999988877653
No 198
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=96.50 E-value=0.019 Score=52.69 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=83.2
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeecccc-ccCCchhHHHHHHHhhcCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGC 637 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~-~~~~~~~~~~~~~~~~~~~ 637 (856)
...+++++|+++..+......|+..|+++. .+.+..+++..+... .++++++|.... ..+ ...++..++..
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~~~~~~~---g~~~~~~l~~~-- 80 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDL--RPDIALVDIMLCGALD---GVETAARLAAG-- 80 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCCSSSC---HHHHHHHHHHH--
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhC--CCCEEEEecCCCCCCC---HHHHHHHHHhC--
Confidence 457899999999999999999999999999 599999999887653 478899887654 222 23345555554
Q ss_pred CCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 638 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 638 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
...++++++........... ...+...++.||+....+...+..++.
T Consensus 81 -~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 81 -CNLPIIFITSSQDVETFQRA-KRVNPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp -SCCCEEEEECCCCHHHHHHH-HTTCCSEEEEESCCHHHHHHHHHHHHH
T ss_pred -CCCCEEEEecCCCHHHHHHH-HhcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 23445555443332111111 123566899999999999999988764
No 199
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=96.49 E-value=0.0084 Score=55.85 Aligned_cols=125 Identities=15% Similarity=0.161 Sum_probs=84.7
Q ss_pred cccCCcEEEEeCCchhhhHHHHHHHHHhC-cEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhc
Q 003018 557 SEFQGMKALVVDPRPIRAKVSRYHIQRLG-IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 635 (856)
Q Consensus 557 ~~~~g~~~lvvd~~~~~~~v~~~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 635 (856)
....+.+++++|+++..+......|...| +.+..+.+..+++..+......++++++|..+...+ ...++..++..
T Consensus 16 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~---g~~~~~~l~~~ 92 (146)
T 4dad_A 16 YFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTA---ELAAIEKLSRL 92 (146)
T ss_dssp CCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHH---HHHHHHHHHHH
T ss_pred CcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCcc---HHHHHHHHHHh
Confidence 34567899999999999999999999999 999999998888766543213578899887764322 23345555553
Q ss_pred CCCCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 636 GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 636 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
. ...++++++........... ...+...++.||+....+...+..++..
T Consensus 93 ~--~~~~ii~lt~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 93 H--PGLTCLLVTTDASSQTLLDA-MRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp C--TTCEEEEEESCCCHHHHHHH-HTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred C--CCCcEEEEeCCCCHHHHHHH-HHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 3 23345555443322111111 1225567999999999999999888753
No 200
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=96.47 E-value=0.032 Score=51.31 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=80.2
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..+++++|+++..+......|+.. +.+..+.+..+++..+... .++++++|..+...+. ..++..++.......
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~ 76 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHH--HPDLVILDMDIIGENS---PNLCLKLKRSKGLKN 76 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHH--CCSEEEEETTC---------CHHHHHHTSTTCTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcH---HHHHHHHHcCcccCC
Confidence 368999999999999999999998 9999999999999887654 4789999877654332 224455555433234
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.++++++........... ...+...++.||+....+...+...+.
T Consensus 77 ~~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 77 VPLILLFSSEHKEAIVNG-LHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp CCEEEEECC----CTTTT-TTCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHH-HhcCCCeeeeCCCCHHHHHHHHHHHHh
Confidence 445555443332222222 223567899999999999998887764
No 201
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=96.45 E-value=0.012 Score=51.80 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=80.1
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
+.+++++|+++..+......|+.+|+++..+.+..+++..+... .++++++|...... ....++..+++......
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~--~~dlii~d~~~~~~---~~~~~~~~l~~~~~~~~ 75 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLL--QPIVILMAWPPPDQ---SCLLLLQHLREHQADPH 75 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEECSTTCC---THHHHHHHHHHTCCCSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhc--CCCEEEEecCCCCC---CHHHHHHHHHhccccCC
Confidence 35799999999999999999999999999999999999887654 47888888765332 22345556665432233
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
.++++++...... .....+...++.||+....+...+...+
T Consensus 76 ~~ii~~~~~~~~~----~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 76 PPLVLFLGEPPVD----PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp CCCEEEESSCCSS----HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred CCEEEEeCCCCch----hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 3444444432222 1111245678999999999988887554
No 202
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=96.43 E-value=0.016 Score=54.44 Aligned_cols=119 Identities=15% Similarity=0.193 Sum_probs=84.2
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
...+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..++... .
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~~--~ 85 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASR--EVDLVISAAHLPQMD---GPTLLARIHQQY--P 85 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHHHC--T
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcC--CCCEEEEeCCCCcCc---HHHHHHHHHhHC--C
Confidence 457899999999999999999999999999999999999988664 578999988765432 233455555532 2
Q ss_pred CceEEEEeccCCccccCCCCCCCC-CCceeccCCchHHHHHHHHHHhc
Q 003018 640 QSKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..++++++............. .+ ...++.||+....+...+...+.
T Consensus 86 ~~~ii~~s~~~~~~~~~~~~~-~g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 86 STTRILLTGDPDLKLIAKAIN-EGEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp TSEEEEECCCCCHHHHHHHHH-TTCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHHHHHHh-CCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 344555544332221111111 24 56799999999999998887764
No 203
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=96.43 E-value=0.022 Score=53.30 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=84.0
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCc--EEEEeCCHHHHHHHHhcC-----CCcceEEEeeccccccCCchhHHHHHHHh
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASG-----SKIINMILVEQEVWEKDTSVSTLFVNNLR 633 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~~-----~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 633 (856)
..+++++|+++..+......|+..|. .+..+.+..+++..+... ...++++++|..+...+ ...++..++
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~---g~~l~~~l~ 84 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKD---GREVLAEIK 84 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSC---HHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCc---HHHHHHHHH
Confidence 46899999999999999999998887 889999999999887653 24579999998765433 234556666
Q ss_pred hcCCCCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 634 KLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 634 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
+.......++++++............ ..+...++.||+....+...++....
T Consensus 85 ~~~~~~~~piiils~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 85 QNPDLKRIPVVVLTTSHNEDDVIASY-ELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp HCTTTTTSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred hCcCcCCCeEEEEECCCChHHHHHHH-HcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 54322334455554433322111111 12566899999999999998877653
No 204
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=96.42 E-value=0.0012 Score=67.56 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=38.6
Q ss_pred EEEEEecCCCCChhhHhhhcCccccCC----------CCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCC
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTPFMQVG----------PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 523 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~pF~q~d----------~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~ 523 (856)
.|.|.|+|+||+++++...|......+ .......|--|+||+-+-. ..-++.|.|....
T Consensus 80 ~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~----vad~v~V~Sr~~~ 148 (228)
T 3t0h_A 80 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL----VAEKVTVITKHND 148 (228)
T ss_dssp EEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEECTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc----cCCEEEEEEecCC
Confidence 589999999999999877665432211 0112344667999986532 2337888887643
No 205
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=96.38 E-value=0.0083 Score=55.25 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=83.5
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..+++++|+++..+......|+..|+++..+.+..+++..+.. ..++++++|..+.... .....++..+++.. ..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~-~~g~~~~~~l~~~~--~~ 80 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQIS--DDAIGMIIEAHLEDKK-DSGIELLETLVKRG--FH 80 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCC--TTEEEEEEETTGGGBT-THHHHHHHHHHHTT--CC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEeCcCCCCC-ccHHHHHHHHHhCC--CC
Confidence 3689999999999999999999999999999999999877654 4588999987765410 12233555666543 23
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
.++++++........... ...+...++.||+....+...+.++...
T Consensus 81 ~~ii~~s~~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 81 LPTIVMASSSDIPTAVRA-MRASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp CCEEEEESSCCHHHHHHH-HHTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHH-HHcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 344444443322111111 1225668999999999999999888753
No 206
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=96.36 E-value=0.0072 Score=59.19 Aligned_cols=119 Identities=17% Similarity=0.186 Sum_probs=81.6
Q ss_pred cCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 559 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 559 ~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
....+++++|+++..+......|+..|+.|..+.+..+++..+.. ..++++++|..+...++ ..++..+++..
T Consensus 5 m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g---~~~~~~l~~~~-- 77 (184)
T 3rqi_A 5 MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA--EKFEFITVXLHLGNDSG---LSLIAPLCDLQ-- 77 (184)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTT--SCCSEEEECSEETTEES---HHHHHHHHHHC--
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeccCCCccH---HHHHHHHHhcC--
Confidence 346789999999999999999999999999999999999998865 45789999987654432 33455555532
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
...++++++........... -..+...++.||+....+...+...+
T Consensus 78 ~~~~ii~lt~~~~~~~~~~a-~~~Ga~~~l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 78 PDARILVLTGYASIATAVQA-VKDGADNYLAKPANVESILAALQTNA 123 (184)
T ss_dssp TTCEEEEEESSCCHHHHHHH-HHHTCSEEEESSCCHHHHHHHTSTTH
T ss_pred CCCCEEEEeCCCCHHHHHHH-HHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 23344444433222111111 12256689999999999988776544
No 207
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=96.32 E-value=0.022 Score=52.22 Aligned_cols=122 Identities=10% Similarity=0.076 Sum_probs=83.4
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeecccccc--CCchhHHHHHHHhhcCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEK--DTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~--~~~~~~~~~~~~~~~~~~ 638 (856)
..+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|...... .......++..+++..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~-- 78 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREE--NPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY-- 78 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHS--CEEEEEEETTTTC-----CCHHHHHHHHHHHC--
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcC--CCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC--
Confidence 46899999999999999999999999999999999999888764 47889998765410 0111233455555532
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
...++++++........... ...+...++.||+....+...+..++..
T Consensus 79 ~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 79 RDLPVVLFTAYADIDLAVRG-IKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp TTCCEEEEEEGGGHHHHHHH-HHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCHHHHHHH-HHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 23445555443322111111 1125668999999999999999988753
No 208
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=96.32 E-value=0.039 Score=49.71 Aligned_cols=118 Identities=13% Similarity=0.149 Sum_probs=81.6
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..+++++|+++..+......++..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++.. ..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~~--~~ 75 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDV--RNGVLVTDLRMPDMS---GVELLRNLGDLK--IN 75 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGC--CSEEEEEECCSTTSC---HHHHHHHHHHTT--CC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCC---HHHHHHHHHhcC--CC
Confidence 46899999999999999999999999999999999999877653 468899887764432 233455555432 23
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.++++++............ ..+...++.||+....+...+..++.
T Consensus 76 ~~ii~~s~~~~~~~~~~~~-~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 76 IPSIVITGHGDVPMAVEAM-KAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp CCEEEEECTTCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHH-HhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 3444444432221111111 12556899999999999999988764
No 209
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=96.31 E-value=0.011 Score=53.67 Aligned_cols=120 Identities=16% Similarity=0.252 Sum_probs=81.4
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCc-EEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
..+++++|+++..+......|+..|+ .+..+.+..+++..+... .++++++|..+...+ ...+...+++.....
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~~~~ 80 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQN--PHHLVISDFNMPKMD---GLGLLQAVRANPATK 80 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTS--CCSEEEECSSSCSSC---HHHHHHHHTTCTTST
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcC--CCCEEEEeCCCCCCC---HHHHHHHHhcCcccc
Confidence 36799999999999999999999999 888999999999887653 478888887664332 233455665543223
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..++++++........... ...+...++.||+....+...+...+.
T Consensus 81 ~~~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 81 KAAFIILTAQGDRALVQKA-AALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp TCEEEECCSCCCHHHHHHH-HHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 3444444333222111111 112456789999999999998887653
No 210
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=96.29 E-value=0.026 Score=50.30 Aligned_cols=116 Identities=12% Similarity=0.193 Sum_probs=78.8
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
+.+++++|+++..+......++..|+. +..+.+..+++..+... .++++++|..+...+ ...+...+++.. .
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~---g~~~~~~l~~~~--~ 74 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL--KPDIVTMDITMPEMN---GIDAIKEIMKID--P 74 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEECSCGGGC---HHHHHHHHHHHC--T
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCc---HHHHHHHHHhhC--C
Confidence 358999999999999999999999999 56889999999887653 468899887765432 233455555532 2
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHH
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 684 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~ 684 (856)
..++++++............ ..+...++.||+....+...+.+.
T Consensus 75 ~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 75 NAKIIVCSAMGQQAMVIEAI-KAGAKDFIVKPFQPSRVVEALNKV 118 (120)
T ss_dssp TCCEEEEECTTCHHHHHHHH-HTTCCEEEESSCCHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCHHHHHHHH-HhCcceeEeCCCCHHHHHHHHHHH
Confidence 23444444433221111111 125667999999999998888764
No 211
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=96.25 E-value=0.0077 Score=55.36 Aligned_cols=117 Identities=11% Similarity=0.058 Sum_probs=81.0
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhC-cEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLG-IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
..+++++|+++..+......|+..| +.+..+.+..+++..+.. ..++++++|..+...+.. .++..++....
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~-- 86 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD--TRPGIVILDLGGGDLLGK---PGIVEARALWA-- 86 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTT--CCCSEEEEEEETTGGGGS---TTHHHHHGGGT--
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhc--cCCCEEEEeCCCCCchHH---HHHHHHHhhCC--
Confidence 4689999999999999999999999 999999999988876643 457889998876543322 23444544332
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
..++++++........... ...+...++.||+....+...+...+
T Consensus 87 ~~~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~L~~~i~~~~ 131 (135)
T 3snk_A 87 TVPLIAVSDELTSEQTRVL-VRMNASDWLHKPLDGKELLNAVTFHD 131 (135)
T ss_dssp TCCEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHTC
T ss_pred CCcEEEEeCCCCHHHHHHH-HHcCcHhhccCCCCHHHHHHHHHHHh
Confidence 3344444443322111111 12256689999999999999888765
No 212
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=96.25 E-value=0.031 Score=49.74 Aligned_cols=116 Identities=18% Similarity=0.215 Sum_probs=79.4
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
++++++|+++..+......++..|+.+..+.+..+++..+... .++++++|..+...+ ...++..++... ...
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~---g~~~~~~l~~~~--~~~ 73 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEH--IPDIAIVDLGLPDED---GLSLIRRWRSND--VSL 73 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSC---HHHHHHHHHHTT--CCS
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCC---HHHHHHHHHhcC--CCC
Confidence 3689999999999999999999999999999999999887654 468888887664332 233455555432 123
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
++++++........... ...+...++.||+....+...+...+
T Consensus 74 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~ 116 (121)
T 2pl1_A 74 PILVLTARESWQDKVEV-LSAGADDYVTKPFHIEEVMARMQALM 116 (121)
T ss_dssp CEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHH-HHcCccceEECCCCHHHHHHHHHHHH
Confidence 44444433222111111 11256679999999999998887765
No 213
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=96.21 E-value=0.033 Score=52.04 Aligned_cols=120 Identities=10% Similarity=0.119 Sum_probs=84.0
Q ss_pred cCCcEEEEeCCchhhhHHHHHHHHHhC--cEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcC
Q 003018 559 FQGMKALVVDPRPIRAKVSRYHIQRLG--IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 636 (856)
Q Consensus 559 ~~g~~~lvvd~~~~~~~v~~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~ 636 (856)
...++++++|+++..+......|...| ..+..+.+..+++..+... .++++++|..+...+ ...++..+++..
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~---g~~~~~~l~~~~ 92 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKE--SVDIAILDVEMPVKT---GLEVLEWIRSEK 92 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTS--CCSEEEECSSCSSSC---HHHHHHHHHHTT
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhcc--CCCEEEEeCCCCCCc---HHHHHHHHHHhC
Confidence 345789999999999999999999988 8899999999999888654 478999987765432 233455555532
Q ss_pred CCCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 637 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 637 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
...++++++............ ..+...++.||+....+...+.+++.
T Consensus 93 --~~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~Kp~~~~~l~~~i~~~~~ 139 (150)
T 4e7p_A 93 --LETKVVVVTTFKRAGYFERAV-KAGVDAYVLKERSIADLMQTLHTVLE 139 (150)
T ss_dssp --CSCEEEEEESCCCHHHHHHHH-HTTCSEEEETTSCHHHHHHHHHHHHT
T ss_pred --CCCeEEEEeCCCCHHHHHHHH-HCCCcEEEecCCCHHHHHHHHHHHHc
Confidence 234455554433322111111 22566899999999999999998875
No 214
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=96.21 E-value=0.027 Score=51.89 Aligned_cols=118 Identities=15% Similarity=0.206 Sum_probs=82.4
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..+++++|+++..+......|+..|+++..+.+..+++..+... .++++++|. ... .....++..+++... .
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~-~~~---~~g~~~~~~l~~~~~--~ 75 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRRE--KIDLVFVDV-FEG---EESLNLIRRIREEFP--D 75 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTS--CCSEEEEEC-TTT---HHHHHHHHHHHHHCT--T
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcc--CCCEEEEeC-CCC---CcHHHHHHHHHHHCC--C
Confidence 46899999999999999999999999999999999999888764 578898887 422 122334555554322 3
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
.++++++........... ...+...++.||+....+...+..++..
T Consensus 76 ~pii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 76 TKVAVLSAYVDKDLIINS-VKAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp CEEEEEESCCCHHHHHHH-HHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCHHHHHHH-HHCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 445555443322111111 1124567899999999999999888754
No 215
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=96.16 E-value=0.027 Score=51.32 Aligned_cols=118 Identities=9% Similarity=0.186 Sum_probs=82.0
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
++++++|+++..+......|...|+.+. .+++..+++..+... .++++++|..+...+ ...++..+++... .
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~--~ 74 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVN---GIQVLETLRKRQY--S 74 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHH--CCSEEEEETTCSSSC---HHHHHHHHHHTTC--C
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhc--CCCEEEEecCCCCCC---hHHHHHHHHhcCC--C
Confidence 5799999999999999999999999997 889999988887653 478899987764432 2334555655322 3
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
.++++++............ ..+...++.||+....+...++..+..
T Consensus 75 ~~ii~~s~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 75 GIIIIVSAKNDHFYGKHCA-DAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp SEEEEEECC---CTHHHHH-HTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCChHHHHHHH-HhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 3455554433322211111 225668999999999999999988753
No 216
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=96.13 E-value=0.043 Score=50.01 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=80.3
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++... ..
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~~--~~ 76 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENE--FFNLALFXIKLPDME---GTELLEKAHKLRP--GM 76 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSBCSSSB---HHHHHHHHHHHCT--TS
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCc---hHHHHHHHHhhCC--CC
Confidence 5799999999999999999999999999999999999887653 478899887764332 2334455554322 33
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
++++++........... ...+...++.||+....+...+...+
T Consensus 77 ~ii~~s~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~~ 119 (132)
T 3crn_A 77 KKIMVTGYASLENSVFS-LNAGADAYIMKPVNPRDLLEKIKEKL 119 (132)
T ss_dssp EEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cEEEEeccccHHHHHHH-HhccchhhccCCCCHHHHHHHHHHHH
Confidence 44444433222111111 12256689999999999998887765
No 217
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=96.12 E-value=0.05 Score=49.56 Aligned_cols=118 Identities=17% Similarity=0.202 Sum_probs=81.7
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......|...|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++... ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~~--~~ 76 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETE--KPDLIVLDVMLPKLD---GIEVCKQLRQQKL--MF 76 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSC---HHHHHHHHHHTTC--CC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhc--CCCEEEEecCCCCCC---HHHHHHHHHcCCC--CC
Confidence 5899999999999999999999999999999999999877643 468888887664332 2334555655422 23
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
++++++........... ...+...++.||+....+...+...+..
T Consensus 77 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 77 PILMLTAKDEEFDKVLG-LELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp CEEEEECTTCCCCHHHH-HHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCHHHHHHH-HhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 44444433222111111 1225668999999999999999887753
No 218
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=96.08 E-value=0.015 Score=53.29 Aligned_cols=118 Identities=10% Similarity=0.054 Sum_probs=82.9
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
.++++++|+++..+......|+..|..+..+.+..+++..+... .++++++|......+ ...++..+++.. ..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~--~~ 79 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLH--APDVIITDIRMPKLG---GLEMLDRIKAGG--AK 79 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHTT--CC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCC---HHHHHHHHHhcC--CC
Confidence 46899999999999999999999999999999999999887654 478899987764422 233455565543 23
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.++++++........... ...+...++.||+....+...+.+.+.
T Consensus 80 ~~ii~~s~~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 80 PYVIVISAFSEMKYFIKA-IELGVHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp CEEEECCCCCCHHHHHHH-HHHCCSEECCSSCCHHHHHHHHHHHHH
T ss_pred CcEEEEecCcChHHHHHH-HhCCcceeEcCCCCHHHHHHHHHHHHH
Confidence 344444433221111111 122466789999999999999988764
No 219
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.06 E-value=0.0032 Score=75.16 Aligned_cols=92 Identities=13% Similarity=0.106 Sum_probs=72.6
Q ss_pred HHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCC
Q 003018 723 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 802 (856)
Q Consensus 723 ~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~ 802 (856)
+.+...|++.||+|..+.++.+|+..+.....+++|++|++|+ +.+++++||+. +
T Consensus 20 ~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~~~i~avIld~d~~---~~~ll~~Ir~~----------------------~ 74 (715)
T 3n75_A 20 RELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDKY---NLELCEEISKM----------------------N 74 (715)
T ss_dssp HHHHHHHHHTTCEEECCSSHHHHHHHHHHCTTEEEEEEEHHHH---HHHHHHHHHHH----------------------C
T ss_pred HHHHHHHHHCCcEEEEeCCHHHHHHHHHhCCCceEEEEecccc---HHHHHHHHHHh----------------------C
Confidence 4456899999999999999999999997656799999999996 78999999984 3
Q ss_pred CCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHH
Q 003018 803 FHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 839 (856)
Q Consensus 803 ~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~ 839 (856)
..+||++++......+..-..-.++++|+.+..+..+
T Consensus 75 ~~iPVFl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (715)
T 3n75_A 75 ENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAE 111 (715)
T ss_dssp TTCEEEEECCTTCCCCGGGTTSCCEEEEECCCTTCHH
T ss_pred CCCCEEEEecCCcccccchhhhhccCeEEEeCCCCHH
Confidence 5799999998855433322223578999999875433
No 220
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=96.06 E-value=0.031 Score=51.46 Aligned_cols=117 Identities=14% Similarity=0.219 Sum_probs=81.4
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..+++++|+++..+......|...|+.+..+.+..+++..+... .++++++|..+...+ ...++..++... .
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~---g~~l~~~l~~~~---~ 75 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSN--KYDLIFLEIILSDGD---GWTLCKKIRNVT---T 75 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC--CCSEEEEESEETTEE---HHHHHHHHHTTC---C
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHccCC---C
Confidence 35899999999999999999999999999999999999887654 468888887664322 233555665532 3
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.++++++............ ..+...++.||+....+...+...+.
T Consensus 76 ~~ii~ls~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 76 CPIVYMTYINEDQSILNAL-NSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp CCEEEEESCCCHHHHHHHH-HTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHH-HcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 3444444332221111111 12566899999999999998887764
No 221
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=96.06 E-value=0.11 Score=52.43 Aligned_cols=118 Identities=16% Similarity=0.161 Sum_probs=83.3
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
.++++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..++... ..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~---g~~~~~~l~~~~--~~ 79 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATEN--RPDAIVLDINMPVLD---GVSVVTALRAMD--ND 79 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESSCSSSC---HHHHHHHHHHTT--CC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhcC--CC
Confidence 46899999999999999999999999999999999999887654 478899987765432 233455555532 23
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.++++++........... -..+...++.||+....+...+...+.
T Consensus 80 ~~ii~lt~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 80 VPVCVLSARSSVDDRVAG-LEAGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp CCEEEEECCCTTTCCCTT-TTTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 344444433322221111 223566899999999999999887764
No 222
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=96.06 E-value=0.026 Score=50.65 Aligned_cols=117 Identities=12% Similarity=0.165 Sum_probs=80.6
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...+...+++.. ...
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~--~~~ 76 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKE--RPDLVLLDMKIPGMD---GIEILKRMKVID--ENI 76 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCTTCC---HHHHHHHHHHHC--TTC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCC---HHHHHHHHHHhC--CCC
Confidence 4799999999999999999999999999999999999887653 478899987764332 233445555432 234
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
++++++........... ...+...++.||+....+...+++.+.
T Consensus 77 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 77 RVIIMTAYGELDMIQES-KELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EEEEEESSCCHHHHHHH-HHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred CEEEEEccCchHHHHHH-HhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 44444433222111111 112456789999999999998887653
No 223
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=96.05 E-value=0.03 Score=52.60 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=81.3
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
+.+++++|+++..+......|...|+.+..+.+..+++..+.. ..++++++|..+...+ ...++..++... ..
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dliild~~l~~~~---g~~~~~~l~~~~--~~ 75 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA--DFAGIVISDIRMPGMD---GLALFRKILALD--PD 75 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT--TCCSEEEEESCCSSSC---HHHHHHHHHHHC--TT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--CC
Confidence 4689999999999999999999999999999999999987755 3478899987764322 233455555442 23
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.++++++........... ...+...++.||+....+...+..++.
T Consensus 76 ~pii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 76 LPMILVTGHGDIPMAVQA-IQDGAYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp SCEEEEECGGGHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHH-HhcCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 344444433222111111 112566899999999999998887763
No 224
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=96.03 E-value=0.048 Score=48.66 Aligned_cols=115 Identities=12% Similarity=0.206 Sum_probs=78.7
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...+...+++ ....
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~---~~~~ 74 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQ--SVDLILLDINLPDEN---GLMLTRALRE---RSTV 74 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHT---TCCC
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcC--CCCEEEEeCCCCCCC---hHHHHHHHHh---cCCC
Confidence 4799999999999999999999999999999999988877653 468888887664332 2334555555 1223
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
++++++........... -..+...++.||+....+...+...+
T Consensus 75 ~ii~~s~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~ 117 (122)
T 1zgz_A 75 GIILVTGRSDRIDRIVG-LEMGADDYVTKPLELRELVVRVKNLL 117 (122)
T ss_dssp EEEEEESSCCHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEECCCChhhHHHH-HHhCHHHHccCCCCHHHHHHHHHHHH
Confidence 44444433222111111 11245679999999999988887665
No 225
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=96.02 E-value=0.035 Score=49.61 Aligned_cols=115 Identities=15% Similarity=0.185 Sum_probs=79.0
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...+...+++. ...
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~---~~~ 75 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY--DINLVIMDINLPGKN---GLLLARELREQ---ANV 75 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSC---HHHHHHHHHHH---CCC
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCC---HHHHHHHHHhC---CCC
Confidence 4799999999999999999999999999999999999887653 468888887664332 23345555554 133
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
++++++........... ...+...++.||+....+...+...+
T Consensus 76 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~ 118 (123)
T 1xhf_A 76 ALMFLTGRDNEVDKILG-LEIGADDYITKPFNPRELTIRARNLL 118 (123)
T ss_dssp EEEEEESCCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cEEEEECCCChHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 44444433222111111 11245679999999999988887665
No 226
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=95.95 E-value=0.0055 Score=67.82 Aligned_cols=50 Identities=34% Similarity=0.561 Sum_probs=34.1
Q ss_pred EEEEEecCCCCChhhH--------hhhcCccccCC---CCCCCCCCc-ccchHHHHHHHHHH
Q 003018 461 IVSVEDTGQGIPLEAQ--------SRIFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGR 510 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~--------~~iF~pF~q~d---~s~~~~~~G-tGLGLsI~k~lv~~ 510 (856)
.|+|.|+|.|||.+.. +-+|..+.... ....+..+| .|.||+.+..+.+.
T Consensus 67 ~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~~ 128 (391)
T 1ei1_A 67 SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK 128 (391)
T ss_dssp CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEECCCCcccCcccccCcchHHHhheeccccCCcCCCcccccCCccccchHHHHHhcCe
Confidence 4899999999999984 44777554321 111222344 89999999888753
No 227
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=95.83 E-value=0.043 Score=51.35 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=80.3
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..+++++|+++..+......|+. |+.+..+.+..+++..+... .+++++++|..+...+ ...++..+++.. ..
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~---g~~~~~~l~~~~--~~ 76 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKS-DPFSVIMVDMRMPGME---GTEVIQKARLIS--PN 76 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHS-CCCSEEEEESCCSSSC---HHHHHHHHHHHC--SS
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCc---HHHHHHHHHhcC--CC
Confidence 46899999999999999999975 99999999999999888654 3478999998765432 233445555432 23
Q ss_pred ceEEEEeccCCccccCCCCCCCC-CCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.++++++............. .+ ...++.||+....+...+..++.
T Consensus 77 ~~ii~~s~~~~~~~~~~~~~-~g~~~~~l~KP~~~~~L~~~i~~~l~ 122 (151)
T 3kcn_A 77 SVYLMLTGNQDLTTAMEAVN-EGQVFRFLNKPCQMSDIKAAINAGIK 122 (151)
T ss_dssp CEEEEEECGGGHHHHHHHHH-HTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHH-cCCeeEEEcCCCCHHHHHHHHHHHHH
Confidence 34444443332211111111 13 56789999999999998877653
No 228
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=95.81 E-value=0.059 Score=50.38 Aligned_cols=122 Identities=11% Similarity=0.132 Sum_probs=83.7
Q ss_pred ccCCcEEEEeCCchhhhHHHHHHHHHhCcE--EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhc
Q 003018 558 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQ--VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 635 (856)
Q Consensus 558 ~~~g~~~lvvd~~~~~~~v~~~~l~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 635 (856)
...+.+++++|+++..+......|...|.. +..+.+..+++..+... .++++++|..+...+ ...++..+++.
T Consensus 12 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~ 86 (152)
T 3eul_A 12 QPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAH--LPDVALLDYRMPGMD---GAQVAAAVRSY 86 (152)
T ss_dssp --CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHH--CCSEEEEETTCSSSC---HHHHHHHHHHT
T ss_pred CCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhc
Confidence 346789999999999999999999999954 66799999999887654 478899987764432 23345555554
Q ss_pred CCCCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 636 GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 636 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
. ...++++++............ ..+...++.||+....+...+..++..
T Consensus 87 ~--~~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 87 E--LPTRVLLISAHDEPAIVYQAL-QQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp T--CSCEEEEEESCCCHHHHHHHH-HTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred C--CCCeEEEEEccCCHHHHHHHH-HcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 2 233455554433322111111 225668999999999999999988753
No 229
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=95.76 E-value=0.085 Score=52.87 Aligned_cols=117 Identities=13% Similarity=0.158 Sum_probs=82.8
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
++++++|+++..+......|...|+.+..+.+..+++..+... .++++++|..+...+ ...++..++... ...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~---g~~~~~~lr~~~--~~~ 75 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNE--PFDVVILDIMLPVHD---GWEILKSMRESG--VNT 75 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHHTT--CCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHhcC--CCC
Confidence 5899999999999999999999999999999999999887653 478899987765432 233455565542 233
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
++++++.......... .-..+...++.||+....+...++..+.
T Consensus 76 ~ii~ls~~~~~~~~~~-~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 76 PVLMLTALSDVEYRVK-GLNMGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp CEEEEESSCHHHHHHH-TCCCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHH-HHhCCccEEEeCCCCHHHHHHHHHHHHh
Confidence 4444443322211111 1223567899999999999999988774
No 230
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=95.71 E-value=0.0027 Score=65.72 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=35.9
Q ss_pred EEEEEecCCCCChhhHhhhcCccccC----------CCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCC
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTPFMQV----------GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 522 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~pF~q~----------d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g 522 (856)
.|.|.|||+||+++++..-|....+. +.......|-.|+||+-+-.+ .-++.|.|...
T Consensus 108 ~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~V----adkv~V~Sr~~ 175 (256)
T 3o0i_A 108 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITKHN 175 (256)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGT----EEEEEEEEECT
T ss_pred EEEEecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhcc----CCeEEEEEcCC
Confidence 58999999999999886555322110 001123456789999865332 23677777654
No 231
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=95.70 E-value=0.052 Score=48.08 Aligned_cols=114 Identities=17% Similarity=0.237 Sum_probs=78.1
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCce
Q 003018 563 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (856)
+++++|+++..+......++..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++. ...+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~---~~~~ 74 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE--QPDIIILDLMLPEID---GLEVAKTIRKT---SSVP 74 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHH---CCCC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhC--CCCEEEEeccCCCCC---HHHHHHHHHhC---CCCC
Confidence 789999999999999999999999999999999999887653 468888887664332 23344555542 1234
Q ss_pred EEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 643 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 643 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
+++++........... ...+...++.||+....+...+...+
T Consensus 75 ii~~s~~~~~~~~~~~-~~~g~~~~l~Kp~~~~~l~~~i~~~~ 116 (120)
T 2a9o_A 75 ILMLSAKDSEFDKVIG-LELGADDYVTKPFSNRELQARVKALL 116 (120)
T ss_dssp EEEEESCCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEEecCCchHHHHHH-HhCCHhheEeCCCCHHHHHHHHHHHH
Confidence 4444433222111111 11245679999999999998887765
No 232
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=95.70 E-value=0.0075 Score=63.05 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=34.3
Q ss_pred EEEEEecCCCCChhhHhhhcCc--------cc---cCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCC
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTP--------FM---QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 522 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~p--------F~---q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g 522 (856)
.|.|.|||+||+++++..-+.. |. +.+.......|-.|+|+.-|-. .+-++.|.|...
T Consensus 94 tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~----vadkV~V~Sk~~ 162 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL----VADKVIVYTKNN 162 (281)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG----TEEEEEEEEECT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc----ccCEEEEEEecC
Confidence 5899999999999987543321 11 1101112345778999865433 234567776653
No 233
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=95.70 E-value=0.063 Score=50.24 Aligned_cols=119 Identities=13% Similarity=0.165 Sum_probs=82.7
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHH-hCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQR-LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~-~g~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 637 (856)
+..+++++|+++..+......|+. .|+.+. .+.+..+++..+... .++++++|......+ ...++..++....
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~---g~~~~~~l~~~~~ 78 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRET--TPDIVVMDLTLPGPG---GIEATRHIRQWDG 78 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTT--CCSEEEECSCCSSSC---HHHHHHHHHHHCT
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCC---HHHHHHHHHHhCC
Confidence 457899999999999999999998 899988 899999999887764 378899987764332 2334555555421
Q ss_pred CCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 638 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 638 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
...+++++........... ...+...++.||+....+...+..++.
T Consensus 79 --~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 79 --AARILIFTMHQGSAFALKA-FEAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp --TCCEEEEESCCSHHHHHHH-HHTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred --CCeEEEEECCCCHHHHHHH-HHCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 2344544443322111111 123566799999999999999988764
No 234
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=95.70 E-value=0.0035 Score=64.58 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=37.0
Q ss_pred EEEEEecCCCCChhhHhhhcCccccCCCC---------------CCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCC
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTPFMQVGPS---------------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 523 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~pF~q~d~s---------------~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~ 523 (856)
.|.|.|||+||+++++...|..+.+.... .....|..|+|+.-+..+ ..++.|.|....
T Consensus 80 ~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~v----a~~v~V~Sr~~~ 153 (236)
T 2gqp_A 80 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLV----ADKVIVTSKHNN 153 (236)
T ss_dssp EEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGT----EEEEEEEEECTT
T ss_pred EEEEEECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhc----CCEEEEEEeCCC
Confidence 48999999999999998887655432111 001123478888654443 367888887643
No 235
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=95.65 E-value=0.019 Score=66.08 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=30.4
Q ss_pred EEEEEecCCCCChhhHhhhcCccccCCC------------CCCCCCCcccchHHHHHHH
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTPFMQVGP------------SISRTHGGTGIGLSISKYL 507 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~pF~q~d~------------s~~~~~~GtGLGLsI~k~l 507 (856)
.|+|.|||+||+++++..-|....+.+. ......|..|+|+.=+-.+
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~V 133 (559)
T 1y4s_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIV 133 (559)
T ss_dssp EEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhc
Confidence 5899999999999998776654432211 1122346679998655544
No 236
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=95.60 E-value=0.0085 Score=60.06 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=23.4
Q ss_pred EEEEEecCCCCChhhH--------hhh-cCccccCCC---CCCCCCCcccchHHHHHHHHH
Q 003018 461 IVSVEDTGQGIPLEAQ--------SRI-FTPFMQVGP---SISRTHGGTGIGLSISKYLVG 509 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~--------~~i-F~pF~q~d~---s~~~~~~GtGLGLsI~k~lv~ 509 (856)
.|+|.|+|.|||.+.. +.+ +.+....+- ......|=-|.||+.+..+.+
T Consensus 50 ~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~s~GfrGeglssinalS~ 110 (201)
T 3fv5_A 50 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 110 (201)
T ss_dssp CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC---------------------CHHHHHTEE
T ss_pred EEEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccccCcccceecchhhcccc
Confidence 3899999999999873 343 344432111 111122336889998887763
No 237
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.59 E-value=0.041 Score=60.53 Aligned_cols=117 Identities=13% Similarity=0.131 Sum_probs=82.4
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
+++++|||++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+... ++..++... ...
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~DlvllDi~mP~~dG~e---ll~~lr~~~--~~~ 73 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKEL--FFPVIVLDVWMPDGDGVN---FIDFIKENS--PDS 73 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHB--CCSEEEEESEETTEETTT---HHHHHHHHC--TTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHH---HHHHHHhhC--CCC
Confidence 3799999999999999999999999999999999999988654 478999998776544322 344444432 123
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
++++++........... -..+...++.||+....+...+.+++.
T Consensus 74 pvI~lT~~~~~~~~~~a-~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 117 (368)
T 3dzd_A 74 VVIVITGHGSVDTAVKA-IKKGAYEFLEKPFSVERFLLTIKHAFE 117 (368)
T ss_dssp EEEEEECSSCCHHHHHH-HHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCHHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 44444433222111111 112456799999999999999988774
No 238
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=95.56 E-value=0.07 Score=52.83 Aligned_cols=116 Identities=9% Similarity=0.133 Sum_probs=80.4
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
.+++++|+++..+......|...|+.+. .+.+..+++..+... .++++++|..+...+ ...++..++....
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~--~~dlvi~D~~~p~~~---g~~~~~~l~~~~~--- 85 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELH--KPDLVIMDVKMPRRD---GIDAASEIASKRI--- 85 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSC---HHHHHHHHHHTTC---
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCC---hHHHHHHHHhcCC---
Confidence 5899999999999999999999999988 899999999887653 478899987765432 2334555555432
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.++++++........... ...+...++.||+....+...+..++.
T Consensus 86 ~pii~lt~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~~~ 130 (205)
T 1s8n_A 86 APIVVLTAFSQRDLVERA-RDAGAMAYLVKPFSISDLIPAIELAVS 130 (205)
T ss_dssp SCEEEEEEGGGHHHHHTT-GGGSCEEEEEESCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHH-HhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 234444333222111111 123566799999999999998877653
No 239
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=95.53 E-value=0.15 Score=55.55 Aligned_cols=188 Identities=14% Similarity=0.169 Sum_probs=111.1
Q ss_pred cEEEEeCCchhhhHHHHHHHHHh-CcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~-g~~-v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.++|++|+++..+......|+.. |+. +..+.+..+++..+... .++++++|..+...+ ...++..+++...
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~--~pDlVllDi~mp~~d---Glell~~l~~~~p-- 76 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKF--NPDVLTLDVEMPRMD---GLDFLEKLMRLRP-- 76 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEEECCCSSSC---HHHHHHHHHHSSC--
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhcc--CCCEEEEECCCCCCC---HHHHHHHHHhcCC--
Confidence 58999999999999999999986 998 67899999999887653 478999998765433 2334555555432
Q ss_pred CceEEEEeccCCccc-cCCCCCCCCCCceeccCCch---------HHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCC
Q 003018 640 QSKLFLLANSISSSR-ANTSTDGVSIPSVIMKPLRS---------SMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG 709 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~kp~~~---------~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (856)
.++++++....... ........+...++.||+.. ..+...++.+........ . ..+. ... ...
T Consensus 77 -~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~~~~~-~--~~~~-~~~--~~~ 149 (349)
T 1a2o_A 77 -MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARARIAAH-K--PMAA-PTT--LKA 149 (349)
T ss_dssp -CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCCGGGG-S--CCCC-CCC--CCC
T ss_pred -CcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhhcccC-C--Cccc-cCC--CCC
Confidence 34444443222100 00001112556799999973 667777766654321110 0 0000 000 000
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCE-EEEEcCHHHHHHHhCC--CCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMP--PHQFDACFMDIQMPEMDGFEATKIIREM 779 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~-v~~a~~g~eA~~~l~~--~~~~DlilmDi~MP~mdG~e~~~~IR~~ 779 (856)
.++. ...... +-....|.+|+..+.. +..|+++++..+||..-.-.+.+++.+.
T Consensus 150 ~~~~----------------~~~~vv~iGaS~gG~~al~~~l~~lp~~~~~ivivqH~~~~~~~~~~~~l~~~ 206 (349)
T 1a2o_A 150 GPLL----------------SSEKLIAIGASTGGTEAIRHVLQPLPLSSPAVIITQHMPPGFTRSFAERLNKL 206 (349)
T ss_dssp CCCC----------------CTTCEEEEEECTTHHHHHHHHHTTCCTTCCEEEEEECCCTTHHHHHHHHHHHH
T ss_pred cccC----------------CCceEEEEecCcccHHHHHHHHHhCCCCCCeEEEEecCCCCccHHHHHHHhcc
Confidence 0000 000111 1134578899887632 2346779999999998888888888763
No 240
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.50 E-value=0.056 Score=49.68 Aligned_cols=116 Identities=10% Similarity=0.101 Sum_probs=79.6
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCce
Q 003018 563 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (856)
+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++.. ...+
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvllD~~l~~~~---g~~l~~~l~~~~--~~~~ 78 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERS--KPQLIILDLKLPDMS---GEDVLDWINQND--IPTS 78 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHH--CCSEEEECSBCSSSB---HHHHHHHHHHTT--CCCE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCC---HHHHHHHHHhcC--CCCC
Confidence 799999999999999999999999999999999999887653 468888887664432 233455555432 2234
Q ss_pred EEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 643 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 643 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
+++++........... ...+...++.||+....+...+...+.
T Consensus 79 ii~ls~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 79 VIIATAHGSVDLAVNL-IQKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp EEEEESSCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEEecCcHHHHHHH-HHCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 4444433222111111 112566799999999999988877653
No 241
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=95.45 E-value=0.088 Score=52.10 Aligned_cols=118 Identities=10% Similarity=0.100 Sum_probs=80.8
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..+++++|+++..+......|+..|+.+..+.+..+++..+.. ..++++++|..+...+ ...++..++... ..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~---g~~~~~~l~~~~--~~ 76 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP--EQHGCLVLDMRMPGMS---GIELQEQLTAIS--DG 76 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT--TSCEEEEEESCCSSSC---HHHHHHHHHHTT--CC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhc--cCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CC
Confidence 3589999999999999999999999999999999999987654 3578899987765432 233455555532 23
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
.++++++............ ..+...++.||+....+...+...+.
T Consensus 77 ~~ii~ls~~~~~~~~~~a~-~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 77 IPIVFITAHGDIPMTVRAM-KAGAIEFLPKPFEEQALLDAIEQGLQ 121 (208)
T ss_dssp CCEEEEESCTTSCCCHHHH-HTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHH-HCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 3444444332221111111 12455789999999999888877653
No 242
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.02 Score=67.20 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=27.7
Q ss_pred EEEEEecCCCCChhhHhhhcCccccCCC----------CCCCCCCcccchHHHH
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTPFMQVGP----------SISRTHGGTGIGLSIS 504 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~pF~q~d~----------s~~~~~~GtGLGLsI~ 504 (856)
.|+|.|||+||+++++..-|...-+.+. ......|..|+|+.=|
T Consensus 74 ~I~I~DnGiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySa 127 (677)
T 2cg9_A 74 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL 127 (677)
T ss_dssp EEEEEECSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHH
Confidence 4899999999999998766543221100 0112346678888544
No 243
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=95.29 E-value=0.042 Score=49.86 Aligned_cols=120 Identities=13% Similarity=0.172 Sum_probs=81.6
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..+++++|+++..+......|+..|..+..+++..+++..+... ++++++|..+...+ ...++..+++.. ..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~---~dlvi~D~~l~~~~---g~~~~~~l~~~~--~~ 74 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNK---QDIIILDLMMPDMD---GIEVIRHLAEHK--SP 74 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCT---TEEEEEECCTTTTH---HHHHHHHHHHTT--CC
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhccC---CCEEEEeCCCCCCC---HHHHHHHHHhCC--CC
Confidence 46899999999999999999999999999999998887665443 89999987664322 233455555532 22
Q ss_pred ceEEEEeccCCcc----ccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCC
Q 003018 641 SKLFLLANSISSS----RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 688 (856)
Q Consensus 641 ~~~~ll~~~~~~~----~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~ 688 (856)
.++++++...... .........+...++.||+....+...+.++....
T Consensus 75 ~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 75 ASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 3444444332210 11001122245578999999999999999887543
No 244
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=95.21 E-value=0.12 Score=48.36 Aligned_cols=120 Identities=11% Similarity=0.120 Sum_probs=77.9
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHh-Cc-EEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRL-GI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~-g~-~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
..+++++|+++..+......|+.. |+ .+..+.+..+++..+... ..++++++|......+ ...++..++...
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~---g~~~~~~l~~~~-- 76 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEAD-NTVDLILLDVNLPDAE---AIDGLVRLKRFD-- 76 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTT-CCCSEEEECC---------CHHHHHHHHHHC--
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhcc-CCCCEEEEeCCCCCCc---hHHHHHHHHHhC--
Confidence 358999999999999999999998 88 788999999999888752 3578888887664332 233455555542
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
...++++++........... ...+...++.||+....+...+..++..
T Consensus 77 ~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 77 PSNAVALISGETDHELIRAA-LEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp TTSEEEEC-----CHHHHHH-HHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCCHHHHHHH-HHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 12344444433222111111 1225667899999999999999988753
No 245
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=95.21 E-value=0.072 Score=48.20 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=79.4
Q ss_pred cEEEEeCCchhhhHHHHHHHHHh-CcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~-g~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.+++++|+++..+......+... |+.+. .+.+..+++..+... .++++++|..+...+ ...++..+++.. ..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~---g~~~~~~l~~~~-~~ 76 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEK--RPDILLLDIIMPHLD---GLAVLERIRAGF-EH 76 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSC---HHHHHHHHHHHC-SS
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCC---HHHHHHHHHhcC-CC
Confidence 57999999999999999999987 88865 789999999887653 468899987764432 233455555521 12
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..++++++............ ..+...++.||+....+...+.+.+.
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~-~~ga~~~l~KP~~~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 77 QPNVIMLTAFGQEDVTKKAV-ELGASYFILKPFDMENLAHHIRQVYG 122 (130)
T ss_dssp CCEEEEEEETTCHHHHHHHH-HTTCEEEEECSSCCTTHHHHHHHHHH
T ss_pred CCcEEEEecCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 34455444433221111111 12456789999999999999988775
No 246
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=95.18 E-value=0.13 Score=46.78 Aligned_cols=117 Identities=9% Similarity=0.119 Sum_probs=79.9
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhC--cEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLG--IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.+++++|+++..+......++..| ..+..+.+..+++..+... .++++++|..+...+ ...++..+++.. .
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~--~~dlvilD~~lp~~~---g~~~~~~l~~~~--~ 76 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEY--NPNVVILDIEMPGMT---GLEVLAEIRKKH--L 76 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHTT--C
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhc--CCCEEEEecCCCCCC---HHHHHHHHHHHC--C
Confidence 479999999999999999999987 6678899999999887653 468899887764432 233455555521 2
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..++++++............ ..+...++.||+....+...+..++.
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~-~~ga~~~l~Kp~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 77 NIKVIIVTTFKRPGYFEKAV-VNDVDAYVLKERSIEELVETINKVNN 122 (133)
T ss_dssp SCEEEEEESCCCHHHHHHHH-HTTCSEEEETTSCHHHHHHHHHHHHC
T ss_pred CCcEEEEecCCCHHHHHHHH-HcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 34445544433221111111 12566899999999999999988764
No 247
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=95.12 E-value=0.097 Score=53.25 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=82.5
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..++... ..
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~---g~~~~~~lr~~~---~~ 77 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL--RPDLVLLDLMLPGMN---GIDVCRVLRADS---GV 77 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHH--CCSEEEEESSCSSSC---HHHHHHHHHTTC---CC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhCC---CC
Confidence 5799999999999999999999999999999999999887653 478899887764332 233455565532 34
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
++++++........... -..+...++.||+....+...+..++..
T Consensus 78 ~ii~lt~~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 78 PIVMLTAKTDTVDVVLG-LESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp CEEEEEETTCCSCHHHH-HHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred cEEEEeCCCCHHHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 44444433222111111 1225668999999999999999988754
No 248
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=95.10 E-value=0.18 Score=46.27 Aligned_cols=116 Identities=16% Similarity=0.260 Sum_probs=79.0
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHh-CcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~-g~~-v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
..+++++|+++..+......|+.. |+. +..+.+..+++..+... .++++++|......+ ...++..+++..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~-- 81 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHN--KVDAIFLDINIPSLD---GVLLAQNISQFA-- 81 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHC--CCSEEEECSSCSSSC---HHHHHHHHTTST--
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCEEEEecCCCCCC---HHHHHHHHHccC--
Confidence 478999999999999999999887 888 56889999999887664 378999987664322 233455555432
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..+.+++++.. ... .... ...+...++.||+....+...+...+.
T Consensus 82 ~~~~ii~~s~~-~~~-~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 82 HKPFIVFITAW-KEH-AVEA-FELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp TCCEEEEEESC-CTT-HHHH-HHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCceEEEEeCC-HHH-HHHH-HhCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 22444544433 211 1111 123556899999999999998887764
No 249
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=95.04 E-value=0.096 Score=46.36 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=77.7
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......++..|+.+..+.+..+++..+... .++++++|..+...+ ...++..++.. ...
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~---~~~ 73 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGD---GIEFIRDLRQW---SAV 73 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESEETTEE---HHHHHHHHHTT---CCC
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCc---HHHHHHHHHhC---CCC
Confidence 3689999999999999999999999999999999988776543 468888887664332 23345555531 223
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
++++++............ ..+...++.||+....+...+...+
T Consensus 74 ~ii~~s~~~~~~~~~~~~-~~g~~~~l~Kp~~~~~l~~~i~~~~ 116 (121)
T 1zh2_A 74 PVIVLSARSEESDKIAAL-DAGADDYLSKPFGIGELQARLRVAL 116 (121)
T ss_dssp CEEEEESCCSHHHHHHHH-HHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHHH-hcCCCeEEeCCcCHHHHHHHHHHHH
Confidence 444444333221111111 1245679999999999998887765
No 250
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=94.94 E-value=0.0067 Score=62.07 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=33.7
Q ss_pred EEEEEecCCCCChhhHhhhcC--------ccc---cCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeC
Q 003018 461 IVSVEDTGQGIPLEAQSRIFT--------PFM---QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 521 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~--------pF~---q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~ 521 (856)
.|.|.|||+||+++++..-+. .|. +.+ ......|-.|+|+.-|-.+ .-++.|.|..
T Consensus 87 ~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~-~d~~~IGqFGvGfySaf~v----adkv~V~Sk~ 153 (239)
T 3nmq_A 87 TLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG-ADISMIGQFGVGFYSAYLV----AEKVVVITKH 153 (239)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTT-CCGGGGGGGTCGGGGGGGT----EEEEEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhccc-CCcccccccCccccccccc----CCEEEEEEee
Confidence 589999999999998743221 121 111 1123456789999876333 2346666654
No 251
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=94.93 E-value=0.066 Score=49.56 Aligned_cols=109 Identities=17% Similarity=0.264 Sum_probs=70.2
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHh-CcEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~-g~~v-~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 637 (856)
.+.+++++|+++..+......|+.. |+.+ ..+.+..+++..+.... .++++++|..+...+. ..++..++....
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~-~~dlvilD~~l~~~~g---~~~~~~lr~~~~ 87 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQP-NVDLILLDIEMPVMDG---MEFLRHAKLKTR 87 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCT-TCCEEEECTTSCCCTT---CHHHHHHHHHCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCC-CCCEEEEeCCCCCCCH---HHHHHHHHhcCC
Confidence 4568999999999999999999998 8886 58999999998876642 5889999987755433 233444554322
Q ss_pred CCCceEEEEecc-CCccccCCCCCCCCCCceeccCCchH
Q 003018 638 GFQSKLFLLANS-ISSSRANTSTDGVSIPSVIMKPLRSS 675 (856)
Q Consensus 638 ~~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~kp~~~~ 675 (856)
.+++++... .............+...++.||+...
T Consensus 88 ---~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~ 123 (145)
T 3kyj_B 88 ---AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTV 123 (145)
T ss_dssp ---CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC
T ss_pred ---CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHH
Confidence 333333331 11111100111225567899999844
No 252
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=94.93 E-value=0.095 Score=53.97 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=83.6
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 560 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 560 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
...+++++|+++..+......|+..|+.|..+.+..+++..+... .++++++|..+...+ ...++..+++. .
T Consensus 36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlvllD~~lp~~~---G~~l~~~lr~~---~ 107 (249)
T 3q9s_A 36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARED--HPDLILLDLGLPDFD---GGDVVQRLRKN---S 107 (249)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEEECCSCHHH---HHHHHHHHHTT---C
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCC---HHHHHHHHHcC---C
Confidence 457899999999999999999999999999999999999887654 478999987764422 23345556542 2
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
..++++++........... -..+...++.||+....+...+...+..
T Consensus 108 ~~~iI~lt~~~~~~~~~~a-~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 108 ALPIIVLTARDTVEEKVRL-LGLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp CCCEEEEESCCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCHHHHHHH-HHCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 3344444433222111111 1125668999999999999999988854
No 253
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=94.65 E-value=0.043 Score=53.96 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=75.8
Q ss_pred ccCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCC
Q 003018 558 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 637 (856)
Q Consensus 558 ~~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 637 (856)
.+.+.+++++|+++..+......|...|+.+..+.+..+++ ...++++++|..+...+ .. +...++...
T Consensus 9 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al------~~~~dlvl~D~~mp~~~---g~-l~~~~~~~~- 77 (196)
T 1qo0_D 9 SLRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF------DVPVDVVFTSIFQNRHH---DE-IAALLAAGT- 77 (196)
T ss_dssp TGGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC------SSCCSEEEEECCSSTHH---HH-HHHHHHHSC-
T ss_pred hhcCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC------CCCCCEEEEeCCCCccc---hH-HHHHHhccC-
Confidence 35678999999999999999999999999999887766544 24678999988764332 12 333444332
Q ss_pred CCCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 638 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 638 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
...++++++........... ...+...++.||+....+...+..++
T Consensus 78 -~~~~ii~lt~~~~~~~~~~a-~~~ga~~~l~KP~~~~~L~~~l~~~~ 123 (196)
T 1qo0_D 78 -PRTTLVALVEYESPAVLSQI-IELECHGVITQPLDAHRVLPVLVSAR 123 (196)
T ss_dssp -TTCEEEEEECCCSHHHHHHH-HHHTCSEEEESSCCGGGHHHHHHHHH
T ss_pred -CCCCEEEEEcCCChHHHHHH-HHcCCCeeEecCcCHHHHHHHHHHHH
Confidence 23444444433222111111 11255679999999999988887665
No 254
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=94.65 E-value=0.055 Score=59.31 Aligned_cols=29 Identities=7% Similarity=0.090 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHHHHhhcCC---CCeEEEEE
Q 003018 372 DPGRFRQIITNLMGNSIKFTE---KGHIFVTV 400 (856)
Q Consensus 372 D~~rl~qIl~NLl~NAiKfT~---~G~I~v~v 400 (856)
|+..+..++.-||.||+...- ...|.|.+
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i 58 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEV 58 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEE
Confidence 678899999999999999532 23455544
No 255
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=94.64 E-value=0.26 Score=45.33 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=76.3
Q ss_pred cEEEEeCCchhhhHHHHHHHHH--hCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQR--LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~--~g~~v~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
.+++++|+++..+......|.. .|+.+. .+.+..+++..+.. ..++++++|..+...+ ...++..+++..
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~---g~~l~~~l~~~~-- 75 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK--HPPNVLLTDVRMPRMD---GIELVDNILKLY-- 75 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT--SCCSEEEEESCCSSSC---HHHHHHHHHHHC--
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--
Confidence 4799999999988888888863 577766 88999999987754 3478999987764432 233455555432
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
...++++++.......... ....+...++.||+....+...+..++.
T Consensus 76 ~~~~ii~ls~~~~~~~~~~-~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 76 PDCSVIFMSGYSDKEYLKA-AIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp TTCEEEEECCSTTTCCC-------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCcHHHHHH-HHhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 2334444443332222111 1223566899999999999988877653
No 256
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=94.62 E-value=0.019 Score=67.35 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.3
Q ss_pred EEEEEecCCCCChhhHhhhcCc
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTP 482 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~p 482 (856)
.|+|.|||+||+++++..-|..
T Consensus 93 ~I~I~DnGiGMt~edl~~~l~t 114 (666)
T 2o1u_A 93 LLHVTDTGVGMTREELVKNLGT 114 (666)
T ss_dssp EEEEEECSCCCCHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhh
Confidence 4899999999999998766644
No 257
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=94.55 E-value=0.31 Score=41.94 Aligned_cols=105 Identities=16% Similarity=0.140 Sum_probs=78.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCC-CCCCHHHHHHHHHhhccccccccc
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM-PEMDGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~M-P~mdG~e~~~~IR~~~~~~~~~~~ 788 (856)
+.||+|-.|-..--.++.++....|.++.... +...-.-|+|||..-+ |+ .|++
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~-------~~~e~~AdlIfCEYlLLPe--------~ifS---------- 67 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQ-------YKQELSADLVVCEYSLLPR--------EIRS---------- 67 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESS-------CCCCTTEEEEEEEGGGSCT--------TCCC----------
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccc-------cCCcccceeEEEeeecChH--------HhcC----------
Confidence 57899999988888888888888888887654 2334567999999743 32 1221
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCCC
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 850 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 850 (856)
.+.....-+|++-.-=+++...+.++-|+. |+..|+++.-|-.+|+.|+..
T Consensus 68 ----------~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 68 ----------PKSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp ----------CTTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred ----------CCCCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 122233446667666678888999999999 999999999999999988753
No 258
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=94.54 E-value=0.18 Score=46.09 Aligned_cols=115 Identities=14% Similarity=0.214 Sum_probs=76.7
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCce
Q 003018 563 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 642 (856)
Q Consensus 563 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (856)
+++++|+++..+......++.. +.+..+.+..+++..+... .++++++|..+...+ ...++..+++.. ....
T Consensus 3 ~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~lp~~~---g~~~~~~l~~~~--~~~~ 74 (139)
T 2jk1_A 3 AILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEE--WVQVIICDQRMPGRT---GVDFLTEVRERW--PETV 74 (139)
T ss_dssp EEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHS--CEEEEEEESCCSSSC---HHHHHHHHHHHC--TTSE
T ss_pred eEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcC--CCCEEEEeCCCCCCc---HHHHHHHHHHhC--CCCc
Confidence 6899999999998888888875 8899999999999887654 478999987765332 233455555432 1234
Q ss_pred EEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 643 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 643 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
+++++...............+...++.||+....+...+..++
T Consensus 75 ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 117 (139)
T 2jk1_A 75 RIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAA 117 (139)
T ss_dssp EEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHH
Confidence 4444433222111111111135679999999999998887665
No 259
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=94.44 E-value=0.2 Score=47.64 Aligned_cols=119 Identities=16% Similarity=0.151 Sum_probs=77.6
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhC--cEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLG--IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
..+++++|+++..+......|+..| ..+..+.+..+++..+... .++++++|..+...+ ...++..++....
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~---g~~l~~~lr~~~~- 98 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL--KPDVITMDIEMPNLN---GIEALKLIMKKAP- 98 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHHSC-
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccC--CCCEEEEeCCCCCCC---HHHHHHHHHhcCC-
Confidence 4689999999999999999999886 3355789999999887654 478999987765432 2334555555432
Q ss_pred CCceEEEEeccCCccc-cCCCCCCCCCCceeccCCc---------hHHHHHHHHHHhcC
Q 003018 639 FQSKLFLLANSISSSR-ANTSTDGVSIPSVIMKPLR---------SSMLAASLQRAMGV 687 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~kp~~---------~~~l~~~l~~~~~~ 687 (856)
.+++++........ ........+...++.||+. ...+...+++.+..
T Consensus 99 --~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 99 --TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp --CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred --ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 33444433222211 1001112256689999998 56777777777654
No 260
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=94.41 E-value=0.16 Score=56.14 Aligned_cols=116 Identities=11% Similarity=0.183 Sum_probs=79.8
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
+++++||+++..+......|+..|+.|..+.+..+++..+... .++++++|..+...+ ...++..++... ...
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~DlvllD~~mp~~d---G~ell~~lr~~~--~~~ 73 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEK--HFNVVLLDLLLPDVN---GLEILKWIKERS--PET 73 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSB---HHHHHHHHHHHC--TTS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhhC--CCC
Confidence 3689999999999999999999999999999999999888653 578999998765432 233455555432 123
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 685 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 685 (856)
++++++...+........ ..+...++.||+....+...+.+++
T Consensus 74 pvIvlT~~~~~~~~~~a~-~~Ga~dyl~KP~~~~~L~~~i~~~l 116 (387)
T 1ny5_A 74 EVIVITGHGTIKTAVEAM-KMGAYDFLTKPCMLEEIELTINKAI 116 (387)
T ss_dssp EEEEEEETTCHHHHHHHH-TTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHHH-hcCceEEecCCCCHHHHHHHHHHHH
Confidence 444444332221111111 1256689999999999888776654
No 261
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=94.37 E-value=0.12 Score=51.81 Aligned_cols=114 Identities=12% Similarity=0.163 Sum_probs=77.6
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
++++++|+++..+......|+..|+.+..+.+..+++..+... .+++++ + ++ .....++..++.. ....
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----l--p~-~~g~~~~~~lr~~--~~~~ 69 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----V--SD-KNALSFVSRIKEK--HSSI 69 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTS--CCSEEE----E--CC-TTHHHHHHHHHHH--CTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcC--CCCEEE----e--CC-CCHHHHHHHHHhC--CCCC
Confidence 3689999999999999999999999999999999999887653 456666 1 11 1223455666655 2134
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCC-chHHHHHHHHHHhcC
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMGV 687 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~-~~~~l~~~l~~~~~~ 687 (856)
++++++........... -..+...++.||+ ....+...+..++..
T Consensus 70 ~ii~lt~~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 70 VVLVSSDNPTSEEEVHA-FEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp EEEEEESSCCHHHHHHH-HHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred cEEEEECCCCHHHHHHH-HHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 44444433222111111 1125668999999 999999999988754
No 262
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=94.35 E-value=0.082 Score=46.98 Aligned_cols=117 Identities=14% Similarity=0.117 Sum_probs=76.8
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......+...|+.+..+.+..+++..+... .++++++|......+.. .++..+++... ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~---~~~~~l~~~~~--~~ 76 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDGL---ALLKQIKQRHP--ML 76 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSC--CCSCEEECSCSSHHHHC---STHHHHHHHCT--TS
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEeeecCCCCHH---HHHHHHHhhCC--CC
Confidence 4689999999999999999999999999999999998877543 46888888765432211 12334443321 22
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
++++++.......... .-..+...++.||+....+...+..++.
T Consensus 77 ~ii~~s~~~~~~~~~~-~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 77 PVIIMTAHSDLDAAVS-AYQQGAFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp CCCCBCCSTTSTTTTS-SCTTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHH-HHhcCcceEeeCCCCHHHHHHHHHHHHH
Confidence 3333333222211111 1223566899999999999998877653
No 263
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=94.30 E-value=0.12 Score=52.15 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=81.6
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..++.. ...
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~---g~~~~~~l~~~---~~~ 76 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRA--GADIVLLDLMLPGMS---GTDVCKQLRAR---SSV 76 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHH--CCSEEEEESSCSSSC---HHHHHHHHHHH---CSC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEECCCCCCC---HHHHHHHHHcC---CCC
Confidence 5799999999999999999999999999999999999887653 478899987764332 23345555553 133
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
++++++........... -..+...++.||+....+...+..++..
T Consensus 77 ~ii~lt~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 77 PVIMVTARDSEIDKVVG-LELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp SEEEEECCHHHHHHHHH-HHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred CEEEEeCCCcHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 44444433221111111 1124557899999999999999988854
No 264
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=94.24 E-value=0.029 Score=65.47 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=33.7
Q ss_pred EEEEEecCCCCChhhHhhhcCccccCCC------------CCCCCCCcccchHHHHHHHHHHcCCEEEEEEeC
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTPFMQVGP------------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 521 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~pF~q~d~------------s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~ 521 (856)
.|+|.|||+||+++++..-|....+.+. ......|..|+|++=+-.++ -++.|.|..
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~Va----dkV~V~Sr~ 143 (624)
T 2ioq_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA----DKVTVRTRA 143 (624)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHE----EEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcC----CeEEEEECC
Confidence 4899999999999997665543322110 01112355689987555543 245555554
No 265
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=93.89 E-value=0.15 Score=50.98 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=79.7
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCCc
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 641 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (856)
++++++|+++..+......|+..| .+..+.+..+++..+ ..++++++|..+...+ ...++..++... ...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~----~~~dlvllD~~lp~~~---g~~~~~~lr~~~--~~~ 72 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE----EAFHVVVLDVMLPDYS---GYEICRMIKETR--PET 72 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC----SCCSEEEEESBCSSSB---HHHHHHHHHHHC--TTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc----CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CCC
Confidence 479999999999999999999999 999999999988765 4678999987765432 233455555543 233
Q ss_pred eEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 642 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 642 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
++++++........... -..+...++.||+....+...+..++..
T Consensus 73 ~ii~lt~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 73 WVILLTLLSDDESVLKG-FEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp EEEEEESCCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 44444433222111111 1125567999999999999999888754
No 266
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=93.84 E-value=0.26 Score=48.99 Aligned_cols=118 Identities=16% Similarity=0.160 Sum_probs=80.9
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhC-cEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLG-IQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g-~~v-~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.+++++|+++..+......|+..| +.+ ..+.+..+++..+... .++++++|..+...+ ...++..+++.. .
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~---g~~~~~~lr~~~--~ 78 (215)
T 1a04_A 6 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMN---GLETLDKLREKS--L 78 (215)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEEETTSTTSC---HHHHHHHHHHSC--C
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCc---HHHHHHHHHHhC--C
Confidence 689999999999999999999874 887 7899999999887653 478999988765432 233455665532 2
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 687 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 687 (856)
..++++++............ ..+...++.||+....+...+..++..
T Consensus 79 ~~~ii~ls~~~~~~~~~~~~-~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 79 SGRIVVFSVSNHEEDVVTAL-KRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp CSEEEEEECCCCHHHHHHHH-HTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCHHHHHHHH-HcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 23444444332221111111 125668999999999999999888753
No 267
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=93.30 E-value=0.26 Score=54.54 Aligned_cols=118 Identities=14% Similarity=0.213 Sum_probs=80.0
Q ss_pred cEEEEeCCchhhhHHHHHHHHH-hCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQR-LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
.++++|||++..+......|+. .|+.|..+.+..+++..+... ..++++++|..+...++ ..++..++... .
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG---~ell~~l~~~~---~ 76 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDG---LAFLRHASLSG---K 76 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCH---HHHHHHHHHHT---C
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCH---HHHHHHHHhcC---C
Confidence 5899999999999999999988 588999999999999887652 35899999988765433 23444555432 2
Q ss_pred ceEEEEeccCCcc-----ccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 641 SKLFLLANSISSS-----RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 641 ~~~~ll~~~~~~~-----~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
...+++.++.... ......-..+...++.||+....+...+.+.+.
T Consensus 77 ~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~ 127 (400)
T 3sy8_A 77 VHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNA 127 (400)
T ss_dssp EEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred CceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHH
Confidence 2233333333222 000011123455789999999999988887654
No 268
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=93.19 E-value=0.15 Score=56.20 Aligned_cols=115 Identities=16% Similarity=0.216 Sum_probs=74.9
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
..++|+||+++..+......|+..|+.|..+.+..+++..+... .++++++|..+...+. ..++..+++.. ..
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~G---~~~~~~lr~~~--~~ 77 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESE--QPDLVICDLRMPQIDG---LELIRRIRQTA--SE 77 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHS--CCSEEEECCCSSSSCT---HHHHHHHHHTT--CC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCH---HHHHHHHHhhC--CC
Confidence 36899999999999999999999999999999999999988654 4789999987654432 33455555532 12
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCC-chHHHHHHHHH
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQR 683 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~-~~~~l~~~l~~ 683 (856)
.++++++........... -..+...++.||+ ....+...+.+
T Consensus 78 ~pii~lt~~~~~~~~~~a-~~~ga~~yl~KP~~~~~~l~~~i~~ 120 (394)
T 3eq2_A 78 TPIIVLSGAGVMSDAVEA-LRLGAADYLIKPLEDLAVLEHSVRR 120 (394)
T ss_dssp CCEEEC---CHHHHHHHH-HHHTCSEECCSSCSCTHHHHHHHHH
T ss_pred CcEEEEEcCCCHHHHHHH-HhcChhhEEECCCChHHHHHHHHHH
Confidence 333333322111111111 1124567899999 45666554443
No 269
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=92.74 E-value=0.12 Score=52.58 Aligned_cols=50 Identities=28% Similarity=0.432 Sum_probs=30.0
Q ss_pred EEEEEecCCCCChhh-------HhhhcCccccC---CC-CCCCCCCcccchHHHHHHHHHH
Q 003018 461 IVSVEDTGQGIPLEA-------QSRIFTPFMQV---GP-SISRTHGGTGIGLSISKYLVGR 510 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~-------~~~iF~pF~q~---d~-s~~~~~~GtGLGLsI~k~lv~~ 510 (856)
.|+|.|+|.|||.+. .+-+|...... +. +.....|=-|.|++.+..|.+.
T Consensus 73 ~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS~~ 133 (226)
T 4emv_A 73 SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSSW 133 (226)
T ss_dssp CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHHHHHHTEEE
T ss_pred eEEEEEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccchhhhhcccc
Confidence 389999999999997 66667432211 11 1111223378999988877643
No 270
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=92.61 E-value=0.15 Score=51.56 Aligned_cols=49 Identities=33% Similarity=0.541 Sum_probs=28.0
Q ss_pred EEEEecCCCCChhhH--------hhhcCccccC---CCCCCCCCCc-ccchHHHHHHHHHH
Q 003018 462 VSVEDTGQGIPLEAQ--------SRIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGR 510 (856)
Q Consensus 462 i~V~DtG~GI~~e~~--------~~iF~pF~q~---d~s~~~~~~G-tGLGLsI~k~lv~~ 510 (856)
|+|+|+|.|||.+.. +-+|...... +.......+| -|.||+.+..|.+.
T Consensus 69 i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS~~ 129 (220)
T 4duh_A 69 VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK 129 (220)
T ss_dssp EEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHHHTEEE
T ss_pred EEEEECCcCcccccccccCcchhhheeeecccCCCcCCCccccccCccceecchhcccccc
Confidence 899999999999864 3455322111 1111112233 78999988887653
No 271
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=91.51 E-value=1 Score=45.06 Aligned_cols=120 Identities=8% Similarity=0.097 Sum_probs=75.6
Q ss_pred CcEEEEeCCchhhhHHHHHHHHH-hCcEEEE-eCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCC
Q 003018 561 GMKALVVDPRPIRAKVSRYHIQR-LGIQVEV-VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 638 (856)
Q Consensus 561 g~~~lvvd~~~~~~~v~~~~l~~-~g~~v~~-~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 638 (856)
..+++++|+++..+......|+. .|+.+.. +.+..+++.... ....++++++|..+...+ ...++..+++. ..
T Consensus 7 ~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~-~~~~~dlvllD~~mp~~~---G~~~~~~lr~~-~~ 81 (225)
T 3klo_A 7 KLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKP-ESRSIQMLVIDYSRISDD---VLTDYSSFKHI-SC 81 (225)
T ss_dssp SEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCS-GGGGCCEEEEEGGGCCHH---HHHHHHHHHHH-HC
T ss_pred ceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHh-hccCCCEEEEeCCCCCCC---HHHHHHHHHHh-hC
Confidence 46899999999999999999984 6898855 344444443211 234688999998765432 23345555542 11
Q ss_pred CCceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 639 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 639 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
...++++++........... ...+...++.||+....+...+...+.
T Consensus 82 ~~~~ii~lt~~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 128 (225)
T 3klo_A 82 PDAKEVIINCPQDIEHKLLF-KWNNLAGVFYIDDDMDTLIKGMSKILQ 128 (225)
T ss_dssp TTCEEEEEEECTTCCHHHHT-TSTTEEEEEETTCCHHHHHHHHHHHHT
T ss_pred CCCcEEEEECCcchhHHHHH-HHhCCCEEEecCCCHHHHHHHHHHHHC
Confidence 23344444433222211111 123566899999999999999988875
No 272
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=91.30 E-value=0.22 Score=50.14 Aligned_cols=117 Identities=9% Similarity=0.091 Sum_probs=78.5
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhC-cE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQRLG-IQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 639 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~~~g-~~-v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (856)
++++++|+++..+......|...| +. +..+.+..+++..+... .++++++|..+...+ ...++..++... .
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~---g~~~~~~lr~~~--~ 74 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAA--RPDVAVLDVRLPDGN---GIELCRDLLSRM--P 74 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSEETTEE---HHHHHHHHHHHC--T
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc--CCCEEEEeCCCCCCC---HHHHHHHHHHhC--C
Confidence 479999999999999999999987 88 45799999999887653 478899987765432 233455555432 2
Q ss_pred CceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 003018 640 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 686 (856)
Q Consensus 640 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 686 (856)
..++++++........... -..+...++.||+....+...+..++.
T Consensus 75 ~~~ii~lt~~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 120 (225)
T 3c3w_A 75 DLRCLILTSYTSDEAMLDA-ILAGASGYVVKDIKGMELARAVKDVGA 120 (225)
T ss_dssp TCEEEEGGGSSSHHHHHHH-HHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 2344444332222111111 112456789999999999999887764
No 273
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=91.02 E-value=0.38 Score=52.02 Aligned_cols=116 Identities=15% Similarity=0.145 Sum_probs=76.8
Q ss_pred cEEEEeCCchhhhHHHHHHHH-HhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCCchhHHHHHHHhhcCCCCC
Q 003018 562 MKALVVDPRPIRAKVSRYHIQ-RLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 640 (856)
Q Consensus 562 ~~~lvvd~~~~~~~v~~~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (856)
.++++||+++..+......|. ..|+.+..+.+..+++..+... .++++++|..+...+ ...++..++.......
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~--~~dlvl~D~~mp~~~---G~~~~~~l~~~~~~~~ 93 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQI--KPTVILQDLVMPGVD---GLTLLAAYRGNPATRD 93 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHH--CCSEEEEESBCSSSB---HHHHHHHHTTSTTTTT
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHhcCcccCC
Confidence 469999999999888888886 4699999999999999887653 468899987765433 2335556665432233
Q ss_pred ceEEEEeccCCccccCCCCCCCCCCceeccCCchHHHHHHHHH
Q 003018 641 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 683 (856)
Q Consensus 641 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~ 683 (856)
.++++++............ ..+...++.||+....+...+..
T Consensus 94 ~~ii~~s~~~~~~~~~~a~-~~Ga~~~l~Kp~~~~~l~~~v~~ 135 (358)
T 3bre_A 94 IPIIVLSTKEEPTVKSAAF-AAGANDYLVKLPDAIELVARIRY 135 (358)
T ss_dssp SCEEEEESSCCHHHHHHHH-HTTCSEEEESCCCHHHHHHHHHH
T ss_pred CcEEEEeCCCCHHHHHHHH-hcChheEeeccCCHHHHHHHHHH
Confidence 4444444332221111111 12566899999998887766543
No 274
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=90.35 E-value=0.35 Score=48.02 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHHhhcC---CCCeEEEEE
Q 003018 372 DPGRFRQIITNLMGNSIKFT---EKGHIFVTV 400 (856)
Q Consensus 372 D~~rl~qIl~NLl~NAiKfT---~~G~I~v~v 400 (856)
++..+..++.-||.||+... ....|.|.+
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i 59 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVI 59 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEE
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEE
Confidence 56778888888888888752 234566654
No 275
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=90.15 E-value=0.47 Score=52.38 Aligned_cols=49 Identities=22% Similarity=0.444 Sum_probs=30.4
Q ss_pred EEEEEecCCCCChhh--------HhhhcCccccC---CC-CCCCCCCcccchHHHHHHHHH
Q 003018 461 IVSVEDTGQGIPLEA--------QSRIFTPFMQV---GP-SISRTHGGTGIGLSISKYLVG 509 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~--------~~~iF~pF~q~---d~-s~~~~~~GtGLGLsI~k~lv~ 509 (856)
.|+|.|+|.|||.+. .+-+|....-. +. ...-..|=.|.||+.+..+.+
T Consensus 87 ~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAlS~ 147 (400)
T 1zxm_A 87 LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST 147 (400)
T ss_dssp EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTEE
T ss_pred EEEEEECCCcccCccccccCccchhheeeeecccCCCCCCcccccCCccccceeeeEEecc
Confidence 489999999999987 44466532211 11 111122337999998887743
No 276
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=89.99 E-value=0.44 Score=52.87 Aligned_cols=67 Identities=21% Similarity=0.480 Sum_probs=39.4
Q ss_pred EEEEEecCCCCChhhHhh--------hcCccccC---CCCCCCCCCc-ccchHHHHHHHHHHcCCEEEEEEeC-CCceEE
Q 003018 461 IVSVEDTGQGIPLEAQSR--------IFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGRMKGEIGFVSIP-NIGSTF 527 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~--------iF~pF~q~---d~s~~~~~~G-tGLGLsI~k~lv~~mgG~I~v~S~~-g~GstF 527 (856)
.|+|+|+|.|||.+..+. +|....-. |....+..|| .|.|.+.|..|-+. +.|+... ..|-.+
T Consensus 99 sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS~~----l~V~v~r~rdGk~y 174 (418)
T 1pvg_A 99 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE----FILETADLNVGQKY 174 (418)
T ss_dssp EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEE----EEEEEEETTTTEEE
T ss_pred EEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCceeccCCccceeeeeeeeccce----EEEEEEECCCCcEE
Confidence 489999999999886443 56443221 1111222334 79999998887654 3455443 235454
Q ss_pred EEEE
Q 003018 528 TFTA 531 (856)
Q Consensus 528 ~~~l 531 (856)
..++
T Consensus 175 ~q~f 178 (418)
T 1pvg_A 175 VQKW 178 (418)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 277
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=89.79 E-value=1.6 Score=44.75 Aligned_cols=82 Identities=21% Similarity=0.109 Sum_probs=60.6
Q ss_pred HHHHHhhcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH-----HHHHHHHHhhcccccccccccccchhhh
Q 003018 725 AAAGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIREMEHNFNNRIRRGEVSIEAY 797 (856)
Q Consensus 725 l~~~L~~~g~~v~--~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG-----~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 797 (856)
....|.+.|+.|. |+.|...|-.+.. -.+++| |.+..|.-.| +++++.|++.
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~~--~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~------------------ 185 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLAE--IGCIAV-MPLAGLIGSGLGICNPYNLRIILEE------------------ 185 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHHH--SCCSEE-EECSSSTTCCCCCSCHHHHHHHHHH------------------
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHH--hCCCEE-EeCCccCCCCCCcCCHHHHHHHHhc------------------
Confidence 4566777899977 6777777766542 356777 7777664322 7888888862
Q ss_pred ccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 798 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 798 ~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
..+|||+=-+-..+++...|++.|+|+.+.
T Consensus 186 -----~~vPVI~eGGI~TPsDAa~AmeLGAdgVlV 215 (265)
T 1wv2_A 186 -----AKVPVLVDAGVGTASDAAIAMELGCEAVLM 215 (265)
T ss_dssp -----CSSCBEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred -----CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 358999866677899999999999999863
No 278
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=89.43 E-value=3.2 Score=39.54 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=77.8
Q ss_pred CCeEEEE----cCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCC-CC-HHHHHHHHHhh
Q 003018 709 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE-MD-GFEATKIIREM 779 (856)
Q Consensus 709 ~~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a---~~g~eA~~~l~~~~~~DlilmDi~MP~-md-G~e~~~~IR~~ 779 (856)
..+||+. |-+..-..++..+|+..||+|... ...++.++.+. ...+|+|.+-..|.. +. --++.+.+|+.
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~-~~~~diV~lS~~~~~~~~~~~~~i~~L~~~ 96 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAV-QEDVDVIGVSILNGAHLHLMKRLMAKLREL 96 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHH-HTTCSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-hcCCCEEEEEeechhhHHHHHHHHHHHHhc
Confidence 4588888 888899999999999999999853 35566666664 467999999887653 11 12233444431
Q ss_pred cccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 780 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 780 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
...++||++ -+....++...+.+.|+|+++..=-+..+....+.+++
T Consensus 97 ---------------------g~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~ 143 (161)
T 2yxb_A 97 ---------------------GADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLA 143 (161)
T ss_dssp ---------------------TCTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred ---------------------CCCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHH
Confidence 112466554 45555666667788999986655445555555555554
No 279
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=83.88 E-value=0.99 Score=49.78 Aligned_cols=49 Identities=27% Similarity=0.487 Sum_probs=25.5
Q ss_pred EEEEecCCCCChhhH--------hhhcCccccC---CCCCCCCCCc-ccchHHHHHHHHHH
Q 003018 462 VSVEDTGQGIPLEAQ--------SRIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGR 510 (856)
Q Consensus 462 i~V~DtG~GI~~e~~--------~~iF~pF~q~---d~s~~~~~~G-tGLGLsI~k~lv~~ 510 (856)
|+|.|+|.|||.+.. +-+|...... +.......+| -|.|++.+..|.+.
T Consensus 84 I~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~~ 144 (408)
T 3lnu_A 84 CEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTK 144 (408)
T ss_dssp EEEEECSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHHHHHHTEEE
T ss_pred EEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCccccccceehhccCe
Confidence 899999999999874 3456332211 1111122233 69999998888754
No 280
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=83.64 E-value=0.53 Score=48.26 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=35.4
Q ss_pred EEEEEecCCCCChhhHhhhcCc--------cc---cCCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEe
Q 003018 461 IVSVEDTGQGIPLEAQSRIFTP--------FM---QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 520 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~~~~iF~p--------F~---q~d~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~ 520 (856)
.|+|.|||+||+++++..-|-. |. +.+.......|-.|+|++-|-. ..-++.|.|.
T Consensus 131 tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFm----VAdkV~V~Sk 197 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFL----VSNRVEVYTK 197 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGG----TEEEEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeec----cCCEEEEEEc
Confidence 5899999999999998876533 21 1111112234678999986543 2355666666
No 281
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=77.68 E-value=7.8 Score=39.76 Aligned_cols=83 Identities=16% Similarity=0.096 Sum_probs=58.2
Q ss_pred HHHHHhhcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH-----HHHHHHHHhhcccccccccccccchhhh
Q 003018 725 AAAGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIREMEHNFNNRIRRGEVSIEAY 797 (856)
Q Consensus 725 l~~~L~~~g~~v~--~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG-----~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 797 (856)
....|.+.|+.|. |..|...|-.+.. -.+++| |.+-.|.-.| .+.++.|++.
T Consensus 116 aa~~L~k~Gf~Vlpy~~~D~~~ak~l~~--~G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~------------------ 174 (268)
T 2htm_A 116 AAERLIEEDFLVLPYMGPDLVLAKRLAA--LGTATV-MPLAAPIGSGWGVRTRALLELFARE------------------ 174 (268)
T ss_dssp HHHHHHHTTCEECCEECSCHHHHHHHHH--HTCSCB-EEBSSSTTTCCCSTTHHHHHHHHHT------------------
T ss_pred HHHHHHHCCCEEeeccCCCHHHHHHHHh--cCCCEE-EecCccCcCCcccCCHHHHHHHHHh------------------
Confidence 4556667799976 6667765544432 346766 8877775555 4557777752
Q ss_pred ccCCCCC-CcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 798 ENVSNFH-VPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 798 ~~~~~~~-~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
... +|||+=-+-...++...+++.|+|+.+.
T Consensus 175 ----~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlV 206 (268)
T 2htm_A 175 ----KASLPPVVVDAGLGLPSHAAEVMELGLDAVLV 206 (268)
T ss_dssp ----TTTSSCBEEESCCCSHHHHHHHHHTTCCEEEE
T ss_pred ----cCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 124 8999877777889999999999999863
No 282
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=76.11 E-value=5.1 Score=48.08 Aligned_cols=111 Identities=12% Similarity=0.088 Sum_probs=71.1
Q ss_pred cEEEEeCCch-hh-------hHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCC-chhHHHHHHH
Q 003018 562 MKALVVDPRP-IR-------AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDT-SVSTLFVNNL 632 (856)
Q Consensus 562 ~~~lvvd~~~-~~-------~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~-~~~~~~~~~~ 632 (856)
+++|+||++. .. .......|+..|++|..+.+..+++..+... ..++.+++|..+...+. .....++..+
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~-~~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTT-CCCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCcccccccHHHHHHHH
Confidence 4789999998 66 7888889999999999999999999887753 23788888876633111 1122356667
Q ss_pred hhcCCCCCceEEEEeccCCccccCCCC-CCCCCCceeccCCchHH
Q 003018 633 RKLGCGFQSKLFLLANSISSSRANTST-DGVSIPSVIMKPLRSSM 676 (856)
Q Consensus 633 ~~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~~~~~~~kp~~~~~ 676 (856)
++.. ...++++++.... ...+... -..+...++.||+....
T Consensus 80 R~~~--~~iPIi~lTa~~~-~~~d~~~~l~~gaddyi~kpf~~~e 121 (755)
T 2vyc_A 80 HERQ--QNVPVFLLGDREK-ALAAMDRDLLELVDEFAWILEDTAD 121 (755)
T ss_dssp HHHS--TTCCEEEEECHHH-HHHTCSHHHHHHCSEEEETTTSCHH
T ss_pred HHhC--CCCCEEEEecCCc-chhhccHhHhhcCCceEeCCCCCHH
Confidence 6653 2334444443211 0011110 11245578999998776
No 283
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=73.17 E-value=15 Score=36.93 Aligned_cols=86 Identities=6% Similarity=0.005 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCC------CCCCCHHHHHHHHHhhcccccccccccccc
Q 003018 721 NLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQ------MPEMDGFEATKIIREMEHNFNNRIRRGEVS 793 (856)
Q Consensus 721 n~~~l~~~L~~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~------MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~ 793 (856)
...-+...+++.|..+. .+.+.++|..... ..+|+|..-.. .+...++++++++++
T Consensus 117 ~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~--~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~--------------- 179 (229)
T 3q58_A 117 DIDSLLTRIRLHGLLAMADCSTVNEGISCHQ--KGIEFIGTTLSGYTGPITPVEPDLAMVTQLSH--------------- 179 (229)
T ss_dssp CHHHHHHHHHHTTCEEEEECSSHHHHHHHHH--TTCSEEECTTTTSSSSCCCSSCCHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHCCCEEEEecCCHHHHHHHHh--CCCCEEEecCccCCCCCcCCCCCHHHHHHHHH---------------
Confidence 33444555566787655 4677788877653 45898853221 234456888888875
Q ss_pred hhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 794 IEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 794 ~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
. ++|+|+-.+-.+.++..+++++|+|+++.
T Consensus 180 --------~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 180 --------A-GCRVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp --------T-TCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred --------c-CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 2 58999988888899999999999999974
No 284
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=72.81 E-value=15 Score=33.80 Aligned_cols=110 Identities=12% Similarity=-0.002 Sum_probs=69.5
Q ss_pred cCCHHHHHHHHHHHhhcCCEEEE---EcCHHHHHHHhCCCCCccEEEEeCCCCCC-C-HHHHHHHHHhhccccccccccc
Q 003018 716 DDNNVNLKVAAAGLKRYGAAVVC---VERGKKATELLMPPHQFDACFMDIQMPEM-D-GFEATKIIREMEHNFNNRIRRG 790 (856)
Q Consensus 716 dDn~~n~~~l~~~L~~~g~~v~~---a~~g~eA~~~l~~~~~~DlilmDi~MP~m-d-G~e~~~~IR~~~~~~~~~~~~g 790 (856)
|-+..-..++..+|+..||+|.. ....++.++.+. .+.+|+|.+-..|..- . --++.+.+|+.
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~-~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~----------- 81 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAI-ETKADAILVSSLYGQGEIDCKGLRQKCDEA----------- 81 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHH-HHTCSEEEEEECSSTHHHHHTTHHHHHHHT-----------
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-hcCCCEEEEEecCcCcHHHHHHHHHHHHhc-----------
Confidence 34556677889999999999983 456777777764 4679999998877421 1 12234455442
Q ss_pred ccchhhhccCCCCCCcEEEEecCCC-HH----hHHHHHHcCCCeEEeCCCCHHHHHHHHhhh
Q 003018 791 EVSIEAYENVSNFHVPILAMTADVI-QA----TYEECLRSGMDGYVSKPFEAEQLYREVSRF 847 (856)
Q Consensus 791 ~~~~~~~~~~~~~~~pIIalTa~~~-~~----~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 847 (856)
...+++|++==+... .+ ....+.++|+|.|..---+..+....+.+.
T Consensus 82 ----------g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 82 ----------GLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp ----------TCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHH
T ss_pred ----------CCCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 112466654332211 22 245588999999987666777776666554
No 285
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=69.56 E-value=31 Score=35.27 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=71.5
Q ss_pred CCeEEEE----cCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCC-CCH-HHHHHHHHhh
Q 003018 709 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE-MDG-FEATKIIREM 779 (856)
Q Consensus 709 ~~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a---~~g~eA~~~l~~~~~~DlilmDi~MP~-mdG-~e~~~~IR~~ 779 (856)
+++||++ |-+..-..++..+|+..||+|... ...++.++.+. .+.+|+|.+-..|+. ++. -++.+.+|+.
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~-~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~ 201 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQ-KEKPIMLTGTALMTTTMYAFKEVNDMLLEN 201 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHH-HHCCSEEEEECCCTTTTTHHHHHHHHHHTT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEEeeccCCHHHHHHHHHHHHhc
Confidence 4578888 777888899999999999998643 34555555553 467999999987764 333 2345566542
Q ss_pred cccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhCC
Q 003018 780 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 780 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 849 (856)
...+||++-=+...++. +-+.|+|.|..-+. +....+.+++.
T Consensus 202 ----------------------~~~~~v~vGG~~~~~~~---~~~igad~~~~da~---~av~~~~~l~~ 243 (258)
T 2i2x_B 202 ----------------------GIKIPFACGGGAVNQDF---VSQFALGVYGEEAA---DAPKIADAIIA 243 (258)
T ss_dssp ----------------------TCCCCEEEESTTCCHHH---HHTSTTEEECSSTT---HHHHHHHHHHT
T ss_pred ----------------------CCCCcEEEECccCCHHH---HHHcCCeEEECCHH---HHHHHHHHHHc
Confidence 22477765544444332 34789988876553 34444444443
No 286
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=67.18 E-value=8.6 Score=48.17 Aligned_cols=50 Identities=24% Similarity=0.539 Sum_probs=32.0
Q ss_pred EEEEEecCCCCChhh--------HhhhcCccccCC---CCCCCCCCc-ccchHHHHHHHHHH
Q 003018 461 IVSVEDTGQGIPLEA--------QSRIFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGR 510 (856)
Q Consensus 461 ~i~V~DtG~GI~~e~--------~~~iF~pF~q~d---~s~~~~~~G-tGLGLsI~k~lv~~ 510 (856)
.|+|.|+|.|||-+. .+-||......+ .......|| .|.|.+.|.-|.+.
T Consensus 94 sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~~ 155 (1177)
T 4gfh_A 94 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE 155 (1177)
T ss_dssp EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCCc
Confidence 389999999999763 344565543322 122223344 69999999888653
No 287
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=66.12 E-value=27 Score=35.14 Aligned_cols=88 Identities=13% Similarity=0.028 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCC------CCCCCHHHHHHHHHhhcccccccccccc
Q 003018 719 NVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQ------MPEMDGFEATKIIREMEHNFNNRIRRGE 791 (856)
Q Consensus 719 ~~n~~~l~~~L~~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~------MP~mdG~e~~~~IR~~~~~~~~~~~~g~ 791 (856)
|....-+...+++.|..+. .+.+.++|..... ..+|+|..-.. .+...++++++++++
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~--~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~------------- 179 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADCSSVDDGLACQR--LGADIIGTTMSGYTTPDTPEEPDLPLVKALHD------------- 179 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHH--TTCSEEECTTTTSSSSSCCSSCCHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHh--CCCCEEEEcCccCCCCCCCCCCCHHHHHHHHh-------------
Confidence 3333444555566787655 4677778777653 45898853221 123446888888885
Q ss_pred cchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 792 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 792 ~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
. ++|+|+-.+-.+.++..+++++|+|+++.
T Consensus 180 ----------~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 180 ----------A-GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp ----------T-TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ----------c-CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 1 58999988888899999999999999874
No 288
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=66.04 E-value=33 Score=33.38 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=51.0
Q ss_pred ChhchHHHHHHHhcCCceeeccccccccCcceEEEEEeeecCCCCCCCChHHHHHhhcceeeeecchHHHHHHHHHHh
Q 003018 71 GKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQL 148 (856)
Q Consensus 71 ~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~ 148 (856)
+...|+...+|+.+|+.+++.|+.-..++.+.+.+..|++..+. .+.|++++.++++.|.+. +..+
T Consensus 94 ~~~~r~~f~~a~~~~~~~is~~~~~~~~g~~~i~ia~pi~~~~g-----------~~~Gvl~~~i~l~~l~~~-~~~~ 159 (217)
T 4dah_A 94 NLADRSFFIKAKETKKTVISDSYSSRITGQPIFTICVPVLDSKR-----------NVTDYLVAAIQIDYLKNL-INLL 159 (217)
T ss_dssp BCTTSHHHHHHHHHCSCEECCCEECTTTCSEEEEEEEEEECTTS-----------CEEEEEEEEEEHHHHHHH-HHHH
T ss_pred CcchhHHHHHHHhcCCcEEeceEEcCCCCCEEEEEEEEEECCCC-----------CEEEEEEEEEcHHHHHHH-HHhc
Confidence 44568899999999999999998754567788899999997321 346999999999987654 4444
No 289
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=64.79 E-value=12 Score=37.89 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=29.0
Q ss_pred CCcEEEEecCCC------HHhHHHHHHcCCCeEEeCCCCHH---HHHHHHhh
Q 003018 804 HVPILAMTADVI------QATYEECLRSGMDGYVSKPFEAE---QLYREVSR 846 (856)
Q Consensus 804 ~~pIIalTa~~~------~~~~~~~~~aG~d~yl~KP~~~~---~L~~~l~~ 846 (856)
++||++++.... .+..+.|.++|+|..+.-....+ ++.+.+++
T Consensus 80 ~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~ 131 (248)
T 1geq_A 80 STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIARE 131 (248)
T ss_dssp CCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHH
Confidence 579998884222 57888899999999998544443 44444443
No 290
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=61.66 E-value=28 Score=34.59 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=65.9
Q ss_pred CCeEEEE----cCCHHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhCCCCCccEEEE--eCCCC-CCCH-HHHHHHHH
Q 003018 709 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFM--DIQMP-EMDG-FEATKIIR 777 (856)
Q Consensus 709 ~~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eA~~~l~~~~~~Dlilm--Di~MP-~mdG-~e~~~~IR 777 (856)
+.+||+. |-+..-..++..+|+..||+|..-. ..++.++.+. .+.+|+|.+ -..|. .|+. -+..+.+|
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~-~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~ 170 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAA-KHKGEKVLLVGSALMTTSMLGQKDLMDRLN 170 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHH-HTTTSCEEEEEECSSHHHHTHHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHH-HcCCCEEEEEchhcccCcHHHHHHHHHHHH
Confidence 3578887 7778888999999999999998642 4455556664 467999999 87764 2222 23444555
Q ss_pred hhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCC
Q 003018 778 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834 (856)
Q Consensus 778 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP 834 (856)
+.. ...++||++-=+-..++ -|-+.|+|.|-.-.
T Consensus 171 ~~~--------------------~~~~v~v~vGG~~~~~~---~a~~iGad~~~~dA 204 (215)
T 3ezx_A 171 EEK--------------------LRDSVKCMFGGAPVSDK---WIEEIGADATAENA 204 (215)
T ss_dssp HTT--------------------CGGGSEEEEESSSCCHH---HHHHHTCCBCCSSH
T ss_pred HcC--------------------CCCCCEEEEECCCCCHH---HHHHhCCeEEECCH
Confidence 421 01257776554444443 34567999986543
No 291
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=59.66 E-value=36 Score=33.43 Aligned_cols=102 Identities=20% Similarity=0.122 Sum_probs=65.5
Q ss_pred CCeEEEE----cCCHHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCC-CCH-HHHHHHHHhh
Q 003018 709 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPE-MDG-FEATKIIREM 779 (856)
Q Consensus 709 ~~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eA~~~l~~~~~~DlilmDi~MP~-mdG-~e~~~~IR~~ 779 (856)
+.+||++ |-+..-..++..+|+..||+|.... ..++-++.+. ...+|+|.+-..|+. ++. -++.+.+|+.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~-~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~ 166 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVK-KYQPDIVGMSALLTTTMMNMKSTIDALIAA 166 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHH-HHCCSEEEEECCSGGGTHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHhc
Confidence 3578888 7778888999999999999998643 3444455553 457999999987764 222 2344555542
Q ss_pred cccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCC
Q 003018 780 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 834 (856)
Q Consensus 780 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP 834 (856)
. ..+++||++-=+...++ -+.+.|+|.|..-.
T Consensus 167 ~--------------------~~~~~~v~vGG~~~~~~---~~~~~gad~~~~da 198 (210)
T 1y80_A 167 G--------------------LRDRVKVIVGGAPLSQD---FADEIGADGYAPDA 198 (210)
T ss_dssp T--------------------CGGGCEEEEESTTCCHH---HHHHHTCSEECSSH
T ss_pred C--------------------CCCCCeEEEECCCCCHH---HHHHcCCeEEECCH
Confidence 1 01247777654444432 24567999876543
No 292
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=58.93 E-value=22 Score=35.12 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=50.8
Q ss_pred CCCeEEEEc------CCHHHHHHHHHHHhhcCCEEEEE----cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHH
Q 003018 708 LGRKILIVD------DNNVNLKVAAAGLKRYGAAVVCV----ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 777 (856)
Q Consensus 708 ~~~~ILvVd------Dn~~n~~~l~~~L~~~g~~v~~a----~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR 777 (856)
.+++|++|+ |...+......+|++.|+++... .+.++..+.+. ..|.|++ |+-+-+.+++.++
T Consensus 26 ~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~---~ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 26 QGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR---KNDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH---HSSEEEE----CCSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH---hCCEEEE----CCCCHHHHHHHHH
Confidence 357999997 55568888899999999999888 47776666663 3688886 8888888888887
Q ss_pred hh
Q 003018 778 EM 779 (856)
Q Consensus 778 ~~ 779 (856)
+.
T Consensus 99 ~~ 100 (206)
T 3l4e_A 99 RT 100 (206)
T ss_dssp HH
T ss_pred HC
Confidence 63
No 293
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=51.83 E-value=5.6 Score=41.03 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=43.2
Q ss_pred CeEEEEcCC--HHHHHHHHHHHhhcCCEEEEEcCHHH--HHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhh
Q 003018 710 RKILIVDDN--NVNLKVAAAGLKRYGAAVVCVERGKK--ATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREM 779 (856)
Q Consensus 710 ~~ILvVdDn--~~n~~~l~~~L~~~g~~v~~a~~g~e--A~~~l~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~ 779 (856)
++||||+++ +.-...+...|+..|++|+......- -.+.+ ..||+|+++-... ..+- +.++.|++.
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L---~~yDvIIl~d~~~~~l~~-~~~~~L~~y 75 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELL---AKQDLVILSDYPAERMTA-QAIDQLVTM 75 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHH---HTCSEEEEESCCGGGBCH-HHHHHHHHH
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHH---hcCCEEEEcCCccccCCH-HHHHHHHHH
Confidence 589999998 66778899999999999998765432 11223 2599998873222 2332 445566553
No 294
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=49.69 E-value=16 Score=37.95 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCC-CCccEEEEeCCCCC-CCHHHHHHHHHh
Q 003018 708 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-HQFDACFMDIQMPE-MDGFEATKIIRE 778 (856)
Q Consensus 708 ~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~-~~~DlilmDi~MP~-mdG~e~~~~IR~ 778 (856)
.+.++.+||-++.....++.-++..+-..+...|+.+++..+.++ ..||+||+|-=--. .+.-++++.|.+
T Consensus 112 ~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~ 184 (283)
T 2oo3_A 112 SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKN 184 (283)
T ss_dssp TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHH
Confidence 346899999999999999888876444455667899998876432 36999999962221 233444455544
No 295
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=48.07 E-value=92 Score=27.96 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=57.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCH-HHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG-KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g-~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
|..+.++|.|+..... +++.|+.+...+.. .+.++.. .-...|+++.-+.-+. +-..++..+|+.
T Consensus 30 g~~v~vid~~~~~~~~----~~~~g~~~i~gd~~~~~~l~~a-~i~~ad~vi~~~~~~~-~n~~~~~~a~~~-------- 95 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDE----LRERGVRAVLGNAANEEIMQLA-HLECAKWLILTIPNGY-EAGEIVASARAK-------- 95 (140)
T ss_dssp TCCEEEEESCHHHHHH----HHHTTCEEEESCTTSHHHHHHT-TGGGCSEEEECCSCHH-HHHHHHHHHHHH--------
T ss_pred CCCEEEEECCHHHHHH----HHHcCCCEEECCCCCHHHHHhc-CcccCCEEEEECCChH-HHHHHHHHHHHH--------
Confidence 4579999999876543 34468887664432 3344443 2246898887553221 223355666654
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
.+.++||+...+ .+......++|+|..+.
T Consensus 96 --------------~~~~~iiar~~~--~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 96 --------------NPDIEIIARAHY--DDEVAYITERGANQVVM 124 (140)
T ss_dssp --------------CSSSEEEEEESS--HHHHHHHHHTTCSEEEE
T ss_pred --------------CCCCeEEEEECC--HHHHHHHHHCCCCEEEC
Confidence 235678877643 45666777899987664
No 296
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=46.95 E-value=1.9e+02 Score=31.44 Aligned_cols=100 Identities=15% Similarity=0.179 Sum_probs=63.9
Q ss_pred CeEEEEc----CCHHHHHHHHHHHhhcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCC------C-----CCCCHHHH
Q 003018 710 RKILIVD----DNNVNLKVAAAGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQ------M-----PEMDGFEA 772 (856)
Q Consensus 710 ~~ILvVd----Dn~~n~~~l~~~L~~~g~~v~--~a~~g~eA~~~l~~~~~~DlilmDi~------M-----P~mdG~e~ 772 (856)
..++++| +.......++.+-+.++..|. .+.+.++|..+.. ...|.|..-.. . .+...+++
T Consensus 157 vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~--aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~a 234 (400)
T 3ffs_A 157 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE--NGADGIKVGIGPGSICTTRIVAGVGVPQITA 234 (400)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHH--TTCSEEEECC---------CCSCBCCCHHHH
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHH--cCCCEEEEeCCCCcCcccccccccchhHHHH
Confidence 3466664 223334555554455577666 4788888887763 45898887321 0 01234566
Q ss_pred HHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEE
Q 003018 773 TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831 (856)
Q Consensus 773 ~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 831 (856)
+..+++.- ....+|||+--+-.+..+..+++.+|++...
T Consensus 235 l~~v~~~~--------------------~~~~IPVIA~GGI~~~~di~kalalGAd~V~ 273 (400)
T 3ffs_A 235 IEKCSSVA--------------------SKFGIPIIADGGIRYSGDIGKALAVGASSVM 273 (400)
T ss_dssp HHHHHHHH--------------------TTTTCCEEEESCCCSHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHH--------------------HhcCCCEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 66665421 1236899998887889999999999999875
No 297
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=44.66 E-value=20 Score=37.16 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEec------CCCHHhHHHHHHcCCCeEEeCCCCHHH
Q 003018 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA------DVIQATYEECLRSGMDGYVSKPFEAEQ 839 (856)
Q Consensus 768 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa------~~~~~~~~~~~~aG~d~yl~KP~~~~~ 839 (856)
+.++.++++|+. ..++||++||- ...+....+|.++|+|+.+.--+..++
T Consensus 83 ~~~~~v~~~r~~----------------------~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee 138 (271)
T 3nav_A 83 ICFELIAQIRAR----------------------NPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNE 138 (271)
T ss_dssp HHHHHHHHHHHH----------------------CTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGG
T ss_pred HHHHHHHHHHhc----------------------CCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHH
Confidence 457888888862 23689999973 234667889999999998885454444
No 298
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=43.64 E-value=96 Score=30.06 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhcCCEEEEE----cCHHHHHHHhCCCCCccEEEEeCCCCCC-------CHHHHHHHHHhhccccccccc
Q 003018 720 VNLKVAAAGLKRYGAAVVCV----ERGKKATELLMPPHQFDACFMDIQMPEM-------DGFEATKIIREMEHNFNNRIR 788 (856)
Q Consensus 720 ~n~~~l~~~L~~~g~~v~~a----~~g~eA~~~l~~~~~~DlilmDi~MP~m-------dG~e~~~~IR~~~~~~~~~~~ 788 (856)
.....+...++++|..+... .+..+.++.+. ....|.|-.+ |+. .+++.++++|+.
T Consensus 90 ~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~-~~g~d~i~v~---~g~~g~~~~~~~~~~i~~l~~~--------- 156 (211)
T 3f4w_A 90 LTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLE-EAGADMLAVH---TGTDQQAAGRKPIDDLITMLKV--------- 156 (211)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHH-HHTCCEEEEE---CCHHHHHTTCCSHHHHHHHHHH---------
T ss_pred hHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-HcCCCEEEEc---CCCcccccCCCCHHHHHHHHHH---------
Confidence 34455667778888876642 33323333332 2346777665 332 256777888763
Q ss_pred ccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe-----CCCCHHHHHHHHh
Q 003018 789 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVS 845 (856)
Q Consensus 789 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L~~~l~ 845 (856)
.+++||++ ++....++..+++++|+|.++. +.-++.+-.+.+.
T Consensus 157 -------------~~~~~i~~-~gGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~ 204 (211)
T 3f4w_A 157 -------------RRKARIAV-AGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKIS 204 (211)
T ss_dssp -------------CSSCEEEE-ESSCCTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHH
T ss_pred -------------cCCCcEEE-ECCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHH
Confidence 12467765 5555688999999999999864 5545554444443
No 299
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=41.53 E-value=1.2e+02 Score=35.81 Aligned_cols=116 Identities=13% Similarity=0.115 Sum_probs=74.3
Q ss_pred CeEEEE----cCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCC-CC-HHHHHHHHHhhc
Q 003018 710 RKILIV----DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE-MD-GFEATKIIREME 780 (856)
Q Consensus 710 ~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a---~~g~eA~~~l~~~~~~DlilmDi~MP~-md-G~e~~~~IR~~~ 780 (856)
.+|++. |.+..-..++..+|+..||+|+.- ...++.++... .+.+|+|.+...|.. |. .-++.+.+|+..
T Consensus 605 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~-e~~adiVglSsl~~~~~~~~~~vi~~Lr~~G 683 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAV-DADVHAVGVSTLAAGHKTLVPELIKELNSLG 683 (762)
T ss_dssp CEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH-HTTCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHH-HcCCCEEEEeeecHHHHHHHHHHHHHHHhcC
Confidence 467765 456666788899999999999863 24567777764 467999998876642 22 234445555421
Q ss_pred ccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhhC
Q 003018 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 848 (856)
Q Consensus 781 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 848 (856)
..+++|+ +-+-.-..+...+.+.|+|+|...--+..+....+.+++
T Consensus 684 ---------------------~~dv~Vi-vGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l 729 (762)
T 2xij_A 684 ---------------------RPDILVM-CGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDI 729 (762)
T ss_dssp ---------------------CTTSEEE-EEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHH
T ss_pred ---------------------CCCCEEE-EeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHH
Confidence 1244443 332233446677889999999985557666666655543
No 300
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=40.97 E-value=46 Score=33.07 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=50.1
Q ss_pred ChhchHHHHHHHh--cCCceeeccccccccCcceEEEEEeeecCCCCCCCChHHHHHhhcceeeeecchHHHHHHHHHHh
Q 003018 71 GKEDRENVLRARA--SGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQL 148 (856)
Q Consensus 71 ~~~~~~~~~~a~~--tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~ 148 (856)
+...|+....|++ +|+.+++.|+.-..++.+.+.+..|++..+. .+.|++++.++++.+.+ ++..+
T Consensus 94 ~~~~r~~f~~a~~~~~~~~~is~p~~~~~~g~~~i~~~~pi~~~~g-----------~~~Gvl~~~i~l~~l~~-~~~~~ 161 (254)
T 3lif_A 94 DNSDRSYFRYHRANDDHTLLITGPIQSRTSGVWVFVVSRRLETTDG-----------KFFGVVVATIESEYFST-FYKTF 161 (254)
T ss_dssp BCTTSHHHHHHHHCCCCCCEEEEEEECTTTCCEEEEEEEEEECTTC-----------CEEEEEEEEECHHHHHH-HHTTS
T ss_pred CcccHHHHHHHHhCCCCCeEECCceecCCCCcEEEEEEeeeeCCCC-----------CEeEEEEEEECHHHHHH-HHHhc
Confidence 4456889999998 7899999998754467788889999987321 24699999999987665 44443
No 301
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=40.04 E-value=61 Score=32.84 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=25.5
Q ss_pred CCcEEEEecCCCHHhHHHHHHcCCCeEEe------CCCCHHHHHHH
Q 003018 804 HVPILAMTADVIQATYEECLRSGMDGYVS------KPFEAEQLYRE 843 (856)
Q Consensus 804 ~~pIIalTa~~~~~~~~~~~~aG~d~yl~------KP~~~~~L~~~ 843 (856)
.+|||+..+-...++..+++++|+|+.+. .|+...++.+.
T Consensus 200 ~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~ 245 (266)
T 2w6r_A 200 TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDMRELKEY 245 (266)
T ss_dssp CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC------------
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCCCHHHHHHH
Confidence 58999998888889999999999998754 34455544443
No 302
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=39.61 E-value=91 Score=31.14 Aligned_cols=86 Identities=9% Similarity=0.103 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcC---HHHHHHHhCCCCCcc-EEE-EeCCCCCCCH---------HHHHHHHHhhccccccc
Q 003018 721 NLKVAAAGLKRYGAAVVCVER---GKKATELLMPPHQFD-ACF-MDIQMPEMDG---------FEATKIIREMEHNFNNR 786 (856)
Q Consensus 721 n~~~l~~~L~~~g~~v~~a~~---g~eA~~~l~~~~~~D-lil-mDi~MP~mdG---------~e~~~~IR~~~~~~~~~ 786 (856)
+...+...++++|..+...-+ ..++++.+... .| +|. +.. |+..| ++.++++|+.
T Consensus 121 ~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~--~d~~i~~~~~--~G~~g~~~~~~~~~~~~i~~l~~~------- 189 (248)
T 1geq_A 121 HAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDM--TTGFVYLVSL--YGTTGAREEIPKTAYDLLRRAKRI------- 189 (248)
T ss_dssp GHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH--CSSEEEEECC--C-------CCCHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc--CCCeEEEEEC--CccCCCCCCCChhHHHHHHHHHhh-------
Confidence 345566677788887665443 35555554321 33 443 444 54433 4456666642
Q ss_pred ccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeC
Q 003018 787 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833 (856)
Q Consensus 787 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~K 833 (856)
.++||++--+-...++..+++++|+|+++.=
T Consensus 190 ----------------~~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 190 ----------------CRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp ----------------CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred ----------------cCCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 1578876555555589999999999998754
No 303
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=39.03 E-value=22 Score=36.68 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=28.1
Q ss_pred CCCcEEEEecCC------CHHhHHHHHHcCCCeEEeCCCCHHHH
Q 003018 803 FHVPILAMTADV------IQATYEECLRSGMDGYVSKPFEAEQL 840 (856)
Q Consensus 803 ~~~pIIalTa~~------~~~~~~~~~~aG~d~yl~KP~~~~~L 840 (856)
.++||++|+-.. .+....+|.++|+|+.+.--...++.
T Consensus 94 ~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~ 137 (267)
T 3vnd_A 94 PDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEES 137 (267)
T ss_dssp TTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGC
T ss_pred CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhH
Confidence 368999997532 26678899999999998865655543
No 304
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei}
Probab=36.69 E-value=43 Score=34.08 Aligned_cols=61 Identities=21% Similarity=0.180 Sum_probs=48.7
Q ss_pred CCChhchHHHHHHHhcCCceeeccccccccCcceEEEEEeeecCCCCCCCChHHHHHhhcceeeeecchHHHHHH
Q 003018 69 LSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEK 143 (856)
Q Consensus 69 ~s~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 143 (856)
..+...|+...+|+.+|+.+++.|+.- ++.+.+.+..|++..+ .+.|+++..++++.|.+.
T Consensus 118 ~~d~~~r~w~~~a~~~~~~~~s~p~~~--~~~~~i~~~~pi~~~g------------~~~Gvl~~~i~l~~l~~~ 178 (290)
T 3lib_A 118 LLHYDSSDYYQLPKATEKDVLTEPYFY--EGVFMVSYVSPIMKEG------------EFAGIGGVDVSLEYVDEV 178 (290)
T ss_dssp CSCTTTSHHHHHHHHHCSCEECCCEEE--TTEEEEEEEEEEEETT------------EEEEEEEEEEEHHHHHHH
T ss_pred cCCCCcchHHHHHHHcCCCEEEcCEEe--CCeEEEEEEEEEEECC------------EEEEEEEEEEeHHHHHHH
Confidence 345667899999999999999999873 5778888999998532 346999999999887654
No 305
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=36.55 E-value=28 Score=35.79 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=27.7
Q ss_pred CCcEEEEecC------CCHHhHHHHHHcCCCeEEeCCCCHHHHH
Q 003018 804 HVPILAMTAD------VIQATYEECLRSGMDGYVSKPFEAEQLY 841 (856)
Q Consensus 804 ~~pIIalTa~------~~~~~~~~~~~aG~d~yl~KP~~~~~L~ 841 (856)
++||++|+-. ........|.++|+|+++.-....+++.
T Consensus 94 ~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~ 137 (268)
T 1qop_A 94 TIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESA 137 (268)
T ss_dssp SSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCH
T ss_pred CCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHH
Confidence 5899988622 2256778899999999998777655443
No 306
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=36.17 E-value=1.4e+02 Score=30.53 Aligned_cols=112 Identities=11% Similarity=0.053 Sum_probs=70.1
Q ss_pred CeEEEE----cCCHHHHHHHHHH--------Hhhc-CCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCCC-HHH-
Q 003018 710 RKILIV----DDNNVNLKVAAAG--------LKRY-GAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEMD-GFE- 771 (856)
Q Consensus 710 ~~ILvV----dDn~~n~~~l~~~--------L~~~-g~~v~~a---~~g~eA~~~l~~~~~~DlilmDi~MP~md-G~e- 771 (856)
.+|++. |-+..-..++..+ |+.. ||+|... ...++.++... .+.+|+|.+-..|..-+ ..+
T Consensus 121 ~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~-e~~~d~VglS~l~t~~~~~~~~ 199 (262)
T 1xrs_B 121 IVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAV-ELEADVLLVSQTVTQKNVHIQN 199 (262)
T ss_dssp EEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHH-HTTCSEEEEECCCCTTSHHHHH
T ss_pred CEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHH-HcCCCEEEEEeecCCccchHHH
Confidence 366665 6677777778877 9999 9999753 34556666664 46799999999887522 222
Q ss_pred ---HHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHh
Q 003018 772 ---ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 845 (856)
Q Consensus 772 ---~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 845 (856)
+.+.+|+.. ...++||++==+ .. +...+.+.|+|.|..--.+..++...+.
T Consensus 200 ~~~~i~~L~~~g--------------------~~~~i~vivGG~-~~--~~~~a~~iGad~~~~da~~~~~~a~~l~ 253 (262)
T 1xrs_B 200 MTHLIELLEAEG--------------------LRDRFVLLCGGP-RI--NNEIAKELGYDAGFGPGRFADDVATFAV 253 (262)
T ss_dssp HHHHHHHHHHTT--------------------CGGGSEEEEECT-TC--CHHHHHTTTCSEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcC--------------------CCCCCEEEEECC-cC--CHHHHHHcCCeEEECCchHHHHHHHHHH
Confidence 334444310 012356654333 32 3445778999988876677666655543
No 307
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=36.07 E-value=1.1e+02 Score=29.97 Aligned_cols=69 Identities=14% Similarity=0.210 Sum_probs=46.0
Q ss_pred EEcCHHHHHHHhCCCCCccEEEEeCCCCC-------CCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEE
Q 003018 738 CVERGKKATELLMPPHQFDACFMDIQMPE-------MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM 810 (856)
Q Consensus 738 ~a~~g~eA~~~l~~~~~~DlilmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIal 810 (856)
.+.+..++.+... ...|.|+++-..|. --|++.++++++. ..+||++.
T Consensus 116 sv~t~~~~~~a~~--~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~-----------------------~~~pvia~ 170 (221)
T 1yad_A 116 SVHSLEEAVQAEK--EDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR-----------------------ISIPVIAI 170 (221)
T ss_dssp EECSHHHHHHHHH--TTCSEEEEECCC----------CHHHHHHHHHHH-----------------------CCSCEEEE
T ss_pred EcCCHHHHHHHHh--CCCCEEEECCccccCCCCCCCCCCHHHHHHHHHh-----------------------CCCCEEEE
Confidence 4567777766553 34788888653222 2357777777652 15788876
Q ss_pred ecCCCHHhHHHHHHcCCCeEEe
Q 003018 811 TADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 811 Ta~~~~~~~~~~~~aG~d~yl~ 832 (856)
-+- ..+...+++++|++++..
T Consensus 171 GGI-~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 171 GGM-TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp SSC-CGGGHHHHHHTTCSEEEE
T ss_pred CCC-CHHHHHHHHHcCCCEEEE
Confidence 554 889999999999998753
No 308
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=36.06 E-value=1.1e+02 Score=30.76 Aligned_cols=85 Identities=11% Similarity=0.096 Sum_probs=56.6
Q ss_pred EEcCHHHHHHHhCCCCCccEEEEeCCCCC-------CCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEE
Q 003018 738 CVERGKKATELLMPPHQFDACFMDIQMPE-------MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM 810 (856)
Q Consensus 738 ~a~~g~eA~~~l~~~~~~DlilmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIal 810 (856)
.+.+..|+.+... ...|.|...--.|. --|++.++++++.. ...+||+++
T Consensus 141 S~ht~~Ea~~A~~--~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~---------------------~~~iPvvAi 197 (243)
T 3o63_A 141 STHDPDQVAAAAA--GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELG---------------------GDDKPWFAI 197 (243)
T ss_dssp EECSHHHHHHHHH--SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC------------------------CCCEEEE
T ss_pred eCCCHHHHHHHhh--CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhc---------------------cCCCCEEEe
Confidence 4577888777653 35899988543322 23688888887520 126899998
Q ss_pred ecCCCHHhHHHHHHcCCCeEEe-----CCCCHHHHHHHHhh
Q 003018 811 TADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVSR 846 (856)
Q Consensus 811 Ta~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L~~~l~~ 846 (856)
-+- ..+...+++++|++++.. +.-++.+-.+.+.+
T Consensus 198 GGI-~~~ni~~~~~aGa~gvav~sai~~a~dp~~a~~~l~~ 237 (243)
T 3o63_A 198 GGI-NAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRS 237 (243)
T ss_dssp SSC-CTTTHHHHHHTTCCCEEESHHHHTCSSHHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 765 778899999999999864 54455554444443
No 309
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=35.72 E-value=1.3e+02 Score=35.53 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=74.4
Q ss_pred CeEEEE----cCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCC-CC-HHHHHHHHHhhc
Q 003018 710 RKILIV----DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE-MD-GFEATKIIREME 780 (856)
Q Consensus 710 ~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a---~~g~eA~~~l~~~~~~DlilmDi~MP~-md-G~e~~~~IR~~~ 780 (856)
.+|++. |-+..-..++..+|+..||+|+.- ...++.++... .+.+|+|.+...|.. |. .-++.+.+|+..
T Consensus 597 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~-e~~adiVglSsl~~~~~~~~~~vi~~L~~~G 675 (727)
T 1req_A 597 PRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAV-EADVHVVGVSSLAGGHLTLVPALRKELDKLG 675 (727)
T ss_dssp CEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHH-HTTCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH-HcCCCEEEEeeecHhHHHHHHHHHHHHHhcC
Confidence 467776 566667788899999999999864 24567777764 467999998876642 22 234555565521
Q ss_pred ccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhh
Q 003018 781 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 846 (856)
Q Consensus 781 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~ 846 (856)
..+++|+ +-+-....+...+.+.|+|+|..-=-+..++...+.+
T Consensus 676 ---------------------~~~i~Vi-vGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~ 719 (727)
T 1req_A 676 ---------------------RPDILIT-VGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVK 719 (727)
T ss_dssp ---------------------CTTSEEE-EEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHH
T ss_pred ---------------------CCCCEEE-EcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHH
Confidence 1244444 3332344466778899999999865666666555544
No 310
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=35.57 E-value=3.4e+02 Score=27.71 Aligned_cols=95 Identities=8% Similarity=0.047 Sum_probs=63.8
Q ss_pred HHHHHHHHhhcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeC---CCCCCCHHHHHHHHHhhcccccccccccccchhhh
Q 003018 722 LKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDI---QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAY 797 (856)
Q Consensus 722 ~~~l~~~L~~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi---~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 797 (856)
...+....+.+|..+. ++.+.+|+...+. ..+|+|=..- .--..| ++.+.++...-
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~~--~ga~iIGinnr~l~t~~~d-l~~~~~L~~~i----------------- 217 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERALK--LSSRLLGVNNRNLRSFEVN-LAVSERLAKMA----------------- 217 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHTT--SCCSEEEEECBCTTTCCBC-THHHHHHHHHS-----------------
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHh--cCCCEEEECCCCCccCCCC-hHHHHHHHHhC-----------------
Confidence 3444555566898644 6788888766653 4588875442 111223 56677776531
Q ss_pred ccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe-----CCCCHHHH
Q 003018 798 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQL 840 (856)
Q Consensus 798 ~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L 840 (856)
...+|+|+-++-...++..++.++|+|+++. ||-++.+-
T Consensus 218 ----p~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~~ 261 (272)
T 3tsm_A 218 ----PSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAA 261 (272)
T ss_dssp ----CTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHHH
T ss_pred ----CCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHHH
Confidence 1257999999999999999999999999975 56555443
No 311
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=35.53 E-value=2.4e+02 Score=29.40 Aligned_cols=82 Identities=20% Similarity=0.124 Sum_probs=56.7
Q ss_pred HHHHhhcCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCC----C---CCHHHHHHHHHhhcccccccccccccchhhh
Q 003018 726 AAGLKRYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMP----E---MDGFEATKIIREMEHNFNNRIRRGEVSIEAY 797 (856)
Q Consensus 726 ~~~L~~~g~~v~~-a~~g~eA~~~l~~~~~~DlilmDi~MP----~---mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 797 (856)
...+++.|..+.. +.+..+|..... ...|.|+.+-.-+ + ...+++++++++.
T Consensus 111 ~~~l~~~gi~vi~~v~t~~~a~~~~~--~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~------------------ 170 (328)
T 2gjl_A 111 IAEFRRHGVKVIHKCTAVRHALKAER--LGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANR------------------ 170 (328)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHH--TTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT------------------
T ss_pred HHHHHHcCCCEEeeCCCHHHHHHHHH--cCCCEEEEECCCCCcCCCCccccHHHHHHHHHHh------------------
Confidence 3456666876554 677788777653 3579888753211 1 2567778887751
Q ss_pred ccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 798 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 798 ~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
.++|||+--+-.+.++..+++.+|+|+...
T Consensus 171 -----~~iPviaaGGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 171 -----LRVPIIASGGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp -----CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred -----cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 258998877776788999999999998753
No 312
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*
Probab=35.35 E-value=44 Score=34.08 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=48.4
Q ss_pred CCChhchHHHHHHHhcCCceeeccccccccCcceEEEEEeeecCCCCCCCChHHHHHhhcceeeeecchHHHHHH
Q 003018 69 LSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEK 143 (856)
Q Consensus 69 ~s~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 143 (856)
..+...|+...+|+.+|+.++|.|+.- ++.+.+.+..|++..+ .+.|+++..++++.|.+.
T Consensus 119 ~~d~~~~~w~~~a~~~~~~~~s~p~~~--~~~~~i~~~~pi~~~g------------~~~Gvl~~~i~l~~l~~~ 179 (291)
T 3li9_A 119 LVHYDSSDYYQLPKTTGKDTLTEPYFY--EGIFMVSYDSPIFKNG------------EFAGIAGVDVPLEYVDDV 179 (291)
T ss_dssp CCCTTTSHHHHHHHHHCSCEECCCEEE--TTEEEEEEEEEEEETT------------EEEEEEEEEEECHHHHHH
T ss_pred cCCCccchHHHHHHHhCCCEEEccEEe--CCEEEEEEEEEEEECC------------EEEEEEEEEeeHHHHHHH
Confidence 345567899999999999999999873 6778888999998532 346999999999886553
No 313
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=35.27 E-value=61 Score=32.46 Aligned_cols=58 Identities=10% Similarity=-0.024 Sum_probs=46.3
Q ss_pred chHHHHHHHhcCCceeeccccccccC-cceEEEEEeeecCCCCCCCChHHHHHhhcceeeeecchHHHHHH
Q 003018 74 DRENVLRARASGKGVLTAPFRLLKTN-RLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEK 143 (856)
Q Consensus 74 ~~~~~~~a~~tg~~~~t~p~~l~~~~-~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 143 (856)
.|+...+|+.+|+.++|.|+.-..++ .+.+.+..|++..+ .+.|+++..++++.|.+.
T Consensus 117 ~~~w~~~a~~~~~~~~s~~~~~~~~~~~~~i~~~~pi~~~g------------~~~Gv~~~~i~l~~l~~~ 175 (274)
T 3lic_A 117 NWDWWSKAINQVGGYWSKAYFDEGAGNVLMITYAVPFGVQP------------DYFGVTTVDLALDRLPEQ 175 (274)
T ss_dssp SCHHHHTTTTTSSCEECCCEECTTTTCSEEEEEEEEESCTT------------CCCEEEEEEEEGGGHHHH
T ss_pred CCcHHHHHHhcCCCEEEeeEEcCCCCceEEEEEEEEEccCC------------EEEEEEEEEEEHHHHHHH
Confidence 78999999999999999998755444 58888899998622 236999999999987554
No 314
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=35.10 E-value=62 Score=31.28 Aligned_cols=63 Identities=21% Similarity=0.117 Sum_probs=47.0
Q ss_pred ChhchHHHHHHHhcCCceeeccccccccCcceEEEEEeeecCCCCCCCChHHHHHhhcceeeeecchHHHHHH
Q 003018 71 GKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEK 143 (856)
Q Consensus 71 ~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 143 (856)
++..|+....|..+|+.+++.|+.-..++.+.+.+..|++..+. ..+.|+++..++++.|.+.
T Consensus 88 ~~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~~i~~~~pi~~~~~----------g~~~Gvl~~~i~~~~l~~~ 150 (240)
T 3c8c_A 88 DPRVRPWYKDAKNAGKLVITAPYADSASGEILVSVATPVKDSAT----------GQFLGSIFYDVSLAELAEL 150 (240)
T ss_dssp CGGGSHHHHHHHHHTSCEECCCEECTTTCCEEEEEEEEEECTTT----------CCEEEEEEEEECHHHHHHH
T ss_pred CcccChHHHHHHhcCCcEEeeceEcCCCCeEEEEEEEEEEECCC----------CeEEEEEEEEEEHHHHHHH
Confidence 45568888899988999999998643455678888899986310 1246999999999887553
No 315
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=35.09 E-value=40 Score=34.48 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=30.5
Q ss_pred CCcEEEEecCCC------HHhHHHHHHcCCCeEEeCCCCHHHHHHHHh
Q 003018 804 HVPILAMTADVI------QATYEECLRSGMDGYVSKPFEAEQLYREVS 845 (856)
Q Consensus 804 ~~pIIalTa~~~------~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 845 (856)
++|+++|+-... ......|.++|+|+++.-.+..+++...+.
T Consensus 94 ~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~ 141 (262)
T 2ekc_A 94 DIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKA 141 (262)
T ss_dssp TSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHH
T ss_pred CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 589999854321 456678999999999998777776654443
No 316
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=34.86 E-value=3.8e+02 Score=27.27 Aligned_cols=101 Identities=11% Similarity=0.002 Sum_probs=64.8
Q ss_pred HHHHHHHHhhcCCEEE-EEcCHHHHHHHhCCCCCccEEEEe---CCCCCCCHHHHHHHHHhhcccccccccccccchhhh
Q 003018 722 LKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMD---IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAY 797 (856)
Q Consensus 722 ~~~l~~~L~~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmD---i~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 797 (856)
...+....+++|..+. .+.+.+++...+. ...|+|-.- ...... +++.++++++.-
T Consensus 151 l~~l~~~a~~lGl~~lvev~t~ee~~~A~~--~Gad~IGv~~r~l~~~~~-dl~~~~~l~~~v----------------- 210 (272)
T 3qja_A 151 LVSMLDRTESLGMTALVEVHTEQEADRALK--AGAKVIGVNARDLMTLDV-DRDCFARIAPGL----------------- 210 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEESSHHHHHHHHH--HTCSEEEEESBCTTTCCB-CTTHHHHHGGGS-----------------
T ss_pred HHHHHHHHHHCCCcEEEEcCCHHHHHHHHH--CCCCEEEECCCccccccc-CHHHHHHHHHhC-----------------
Confidence 3344555667898654 5677777655542 347887664 222222 356677776521
Q ss_pred ccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe-----CCCCHHHHHHHHhh
Q 003018 798 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVSR 846 (856)
Q Consensus 798 ~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L~~~l~~ 846 (856)
...+|+|+-.+-...++..++.++|+|+++. +.-++.+..+.+..
T Consensus 211 ----~~~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a~dp~~~~~~l~~ 260 (272)
T 3qja_A 211 ----PSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVT 260 (272)
T ss_dssp ----CTTSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTCSCHHHHHHHHHT
T ss_pred ----cccCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHHh
Confidence 1258999998888899999999999999986 33355544444433
No 317
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=34.29 E-value=33 Score=35.21 Aligned_cols=74 Identities=18% Similarity=0.061 Sum_probs=48.0
Q ss_pred CCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCC-----CCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCC
Q 003018 733 GAAVV--CVERGKKATELLMPPHQFDACFMDIQM-----PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 805 (856)
Q Consensus 733 g~~v~--~a~~g~eA~~~l~~~~~~DlilmDi~M-----P~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 805 (856)
|..+. ++.+..++..... ...|.| +-..- ....+.+.++++|+. ..+
T Consensus 126 g~~vi~~~~~~~~~a~~~~~--~gad~v-~~~~~~~Gt~~~~~~~~~l~~i~~~-----------------------~~i 179 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEE--LGVHAI-MPGASPIGSGQGILNPLNLSFIIEQ-----------------------AKV 179 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHH--HTCSCB-EECSSSTTCCCCCSCHHHHHHHHHH-----------------------CSS
T ss_pred CeEEEEEcCCCHHHHHHHHH--hCCCEE-EECCcccCCCCCCCCHHHHHHHHhc-----------------------CCC
Confidence 76655 4455555544432 235665 22110 012347788888862 258
Q ss_pred cEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 806 PILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 806 pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
|||+.-+-...++..+++++|+|+++.
T Consensus 180 Pviv~gGI~t~eda~~~~~~GAdgViV 206 (264)
T 1xm3_A 180 PVIVDAGIGSPKDAAYAMELGADGVLL 206 (264)
T ss_dssp CBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 999988888899999999999999864
No 318
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=33.54 E-value=2.2e+02 Score=30.59 Aligned_cols=100 Identities=14% Similarity=0.215 Sum_probs=63.3
Q ss_pred CeEEEEc----CCHHHHHHHHHHHhhc-CCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCCC------------CCHH
Q 003018 710 RKILIVD----DNNVNLKVAAAGLKRY-GAAVV--CVERGKKATELLMPPHQFDACFMDIQMPE------------MDGF 770 (856)
Q Consensus 710 ~~ILvVd----Dn~~n~~~l~~~L~~~-g~~v~--~a~~g~eA~~~l~~~~~~DlilmDi~MP~------------mdG~ 770 (856)
..++++| +.+.....++.+-+.+ +..|. .+.+.++|..+.. ...|.|..-+. |+ ...+
T Consensus 121 vd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~--aGAD~I~vG~g-pGs~~~tr~~~g~g~p~~ 197 (366)
T 4fo4_A 121 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIE--AGVSAVKVGIG-PGSICTTRIVTGVGVPQI 197 (366)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHH--HTCSEEEECSS-CSTTBCHHHHHCCCCCHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHH--cCCCEEEEecC-CCCCCCcccccCcccchH
Confidence 3566664 3343444455554554 55554 4788888887763 35898887321 21 2345
Q ss_pred HHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 771 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 771 e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
+++..+++.-+ ...+|||+-=+-....+..+++.+|+|....
T Consensus 198 ~~l~~v~~~~~--------------------~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 198 TAIADAAGVAN--------------------EYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp HHHHHHHHHHG--------------------GGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHh--------------------hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 66666654211 1258999877777889999999999998753
No 319
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=33.40 E-value=1.1e+02 Score=30.41 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=53.5
Q ss_pred HHHHHhhcCCEEEEEcC---HHHHHHHhCCCCCccEEEEeCCCCCCCH-------HHHHHHHHhhcccccccccccccch
Q 003018 725 AAAGLKRYGAAVVCVER---GKKATELLMPPHQFDACFMDIQMPEMDG-------FEATKIIREMEHNFNNRIRRGEVSI 794 (856)
Q Consensus 725 l~~~L~~~g~~v~~a~~---g~eA~~~l~~~~~~DlilmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~~~g~~~~ 794 (856)
....++++|..+-.+-+ ..+.++.+. ...|+|+..--.|+.+| ++-++++|++.
T Consensus 104 ~i~~i~~~G~k~gval~p~t~~e~l~~~l--~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~-------------- 167 (228)
T 3ovp_A 104 LIKDIRENGMKVGLAIKPGTSVEYLAPWA--NQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQF-------------- 167 (228)
T ss_dssp HHHHHHHTTCEEEEEECTTSCGGGTGGGG--GGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHC--------------
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHh--ccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhc--------------
Confidence 44556778887665543 333443332 23788887666787766 33345555421
Q ss_pred hhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 795 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 795 ~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
.+.| |.+.+....++..+|.++|+|.++.
T Consensus 168 --------~~~~-I~VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 168 --------PSLD-IEVDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp --------TTCE-EEEESSCSTTTHHHHHHHTCCEEEE
T ss_pred --------CCCC-EEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 1233 5688888899999999999998765
No 320
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=32.51 E-value=1.1e+02 Score=29.70 Aligned_cols=67 Identities=24% Similarity=0.308 Sum_probs=46.2
Q ss_pred EcCHHHHHHHhCCCCCccEEEEeCCCCC-------CCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEe
Q 003018 739 VERGKKATELLMPPHQFDACFMDIQMPE-------MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMT 811 (856)
Q Consensus 739 a~~g~eA~~~l~~~~~~DlilmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalT 811 (856)
+.+..++..... ..+|.|+++--.|. ..|++.++++++. .++||++.-
T Consensus 115 ~~t~~e~~~~~~--~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----------------------~~~pvia~G 169 (215)
T 1xi3_A 115 VYSLEEALEAEK--KGADYLGAGSVFPTKTKEDARVIGLEGLRKIVES-----------------------VKIPVVAIG 169 (215)
T ss_dssp ESSHHHHHHHHH--HTCSEEEEECSSCC----CCCCCHHHHHHHHHHH-----------------------CSSCEEEES
T ss_pred cCCHHHHHHHHh--cCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHh-----------------------CCCCEEEEC
Confidence 466666655442 35899988754442 3578888888752 157888755
Q ss_pred cCCCHHhHHHHHHcCCCeEE
Q 003018 812 ADVIQATYEECLRSGMDGYV 831 (856)
Q Consensus 812 a~~~~~~~~~~~~aG~d~yl 831 (856)
+ ...+...+++++|++++.
T Consensus 170 G-I~~~nv~~~~~~Ga~gv~ 188 (215)
T 1xi3_A 170 G-INKDNAREVLKTGVDGIA 188 (215)
T ss_dssp S-CCTTTHHHHHTTTCSEEE
T ss_pred C-cCHHHHHHHHHcCCCEEE
Confidence 4 448888899999999984
No 321
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=32.39 E-value=1.1e+02 Score=30.50 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=43.4
Q ss_pred HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe------CCCCHHHHHHH
Q 003018 770 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS------KPFEAEQLYRE 843 (856)
Q Consensus 770 ~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~------KP~~~~~L~~~ 843 (856)
++.++++++. ..+|||+--+-...++..+++++|+|+.+. .|++..++.+.
T Consensus 185 ~~~i~~l~~~-----------------------~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~ 241 (252)
T 1ka9_F 185 LRLTRMVAEA-----------------------VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRY 241 (252)
T ss_dssp HHHHHHHHHH-----------------------CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHH-----------------------cCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 8889998863 258999988877789999999999999864 57788888776
Q ss_pred Hhh
Q 003018 844 VSR 846 (856)
Q Consensus 844 l~~ 846 (856)
+.+
T Consensus 242 l~~ 244 (252)
T 1ka9_F 242 LAE 244 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 322
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=32.14 E-value=1.9e+02 Score=30.97 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCC------------CCCHHHHHHHHHhhcccccc
Q 003018 720 VNLKVAAAGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMP------------EMDGFEATKIIREMEHNFNN 785 (856)
Q Consensus 720 ~n~~~l~~~L~~~g~~v~--~a~~g~eA~~~l~~~~~~DlilmDi~MP------------~mdG~e~~~~IR~~~~~~~~ 785 (856)
.....++.+-+.++..|. .+.+.++|..+.. ...|.|..-+. | ....++++..+++.-+
T Consensus 132 ~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~--aGaD~I~VG~~-~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~---- 204 (361)
T 3khj_A 132 NIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE--NGADGIKVGIG-PGSICTTRIVAGVGVPQITAIEKCSSVAS---- 204 (361)
T ss_dssp HHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHH--TTCSEEEECSS-CCTTCCHHHHTCBCCCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHH--cCcCEEEEecC-CCcCCCcccccCCCCCcHHHHHHHHHHHh----
Confidence 344555555555577665 4678888877663 45788887321 1 1234556666654211
Q ss_pred cccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEE
Q 003018 786 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831 (856)
Q Consensus 786 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 831 (856)
...+|||+--+-.+.++..+++.+|+|..+
T Consensus 205 ----------------~~~iPVIA~GGI~~~~di~kala~GAd~V~ 234 (361)
T 3khj_A 205 ----------------KFGIPIIADGGIRYSGDIGKALAVGASSVM 234 (361)
T ss_dssp ----------------HHTCCEEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred ----------------hcCCeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 124899987777788999999999999875
No 323
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=32.10 E-value=70 Score=31.19 Aligned_cols=79 Identities=15% Similarity=0.158 Sum_probs=52.6
Q ss_pred HHHhhcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhcccccccccccccchhhhccCCCCC
Q 003018 727 AGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH 804 (856)
Q Consensus 727 ~~L~~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~ 804 (856)
...+++|..+. .+.+..++..... ...|.|.+ .| ...|.+.++++++.- ..+
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~--~G~d~v~v---~~t~~~g~~~~~~l~~~~---------------------~~~ 148 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALE--AGAQALKI---FPSSAFGPQYIKALKAVL---------------------PSD 148 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHH--TTCSEEEE---TTHHHHCHHHHHHHHTTS---------------------CTT
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHH--CCCCEEEE---ecCCCCCHHHHHHHHHhc---------------------cCC
Confidence 45566776532 3678888876653 35899885 22 123567777777521 114
Q ss_pred CcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 805 VPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 805 ~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
+||++.-+-. .++..+++++|++++..
T Consensus 149 ipvia~GGI~-~~~i~~~~~~Ga~gv~v 175 (212)
T 2v82_A 149 IAVFAVGGVT-PENLAQWIDAGCAGAGL 175 (212)
T ss_dssp CEEEEESSCC-TTTHHHHHHHTCSEEEE
T ss_pred CeEEEeCCCC-HHHHHHHHHcCCCEEEE
Confidence 8888776654 88899999999999874
No 324
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=30.82 E-value=55 Score=28.87 Aligned_cols=51 Identities=16% Similarity=0.245 Sum_probs=40.6
Q ss_pred hcCCCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeC
Q 003018 705 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 762 (856)
Q Consensus 705 ~~~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi 762 (856)
+++.|-.+|+==-++..|+++..+|..+|+.+..+... . ....||+.+.|-
T Consensus 3 kLLdgVt~lLdIts~Eir~IV~~~L~~~GA~~i~~der------~-~~~eyDi~lTDn 53 (117)
T 2kx7_A 3 RLLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDER------L-ISQDYDIFLTDN 53 (117)
T ss_dssp CSSSSEEEEEECSSHHHHHHHHHHHHHHTEEEECCCSS------S-SCCCCSEEEEES
T ss_pred ccccCcEEEEEcCcHHHHHHHHHHHHhcCCeEEecccc------C-CCCcccEEEecC
Confidence 35667788888899999999999999999988765322 1 245799999995
No 325
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=30.73 E-value=1.2e+02 Score=33.26 Aligned_cols=97 Identities=18% Similarity=0.307 Sum_probs=61.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCH-HHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG-KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g-~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
+..+.++|.|+...+.+ ++.|+.+...+-. .+.++.. .-...|+|+.-+.-+ ..-..++..+|++
T Consensus 27 g~~vvvId~d~~~v~~~----~~~g~~vi~GDat~~~~L~~a-gi~~A~~viv~~~~~-~~n~~i~~~ar~~-------- 92 (413)
T 3l9w_A 27 GVKMVVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESA-GAAKAEVLINAIDDP-QTNLQLTEMVKEH-------- 92 (413)
T ss_dssp TCCEEEEECCHHHHHHH----HHTTCCCEESCTTCHHHHHHT-TTTTCSEEEECCSSH-HHHHHHHHHHHHH--------
T ss_pred CCCEEEEECCHHHHHHH----HhCCCeEEEcCCCCHHHHHhc-CCCccCEEEECCCCh-HHHHHHHHHHHHh--------
Confidence 45799999998765443 4578877665433 3345544 234689998866422 1234455666654
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCC
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 835 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~ 835 (856)
.++++||+-+.+ .+......++|+|..+.--+
T Consensus 93 --------------~p~~~Iiara~~--~~~~~~L~~~Gad~Vi~~~~ 124 (413)
T 3l9w_A 93 --------------FPHLQIIARARD--VDHYIRLRQAGVEKPERETF 124 (413)
T ss_dssp --------------CTTCEEEEEESS--HHHHHHHHHTTCSSCEETTH
T ss_pred --------------CCCCeEEEEECC--HHHHHHHHHCCCCEEECccH
Confidence 346788887754 55666778999998775443
No 326
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=30.33 E-value=1.5e+02 Score=29.57 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=47.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCE--EE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~--v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 778 (856)
+.+|..||=++.....++..+++.|.. |. ...+..+.+..+.....||+|++|... .+-..+++.++.
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~ 158 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDADK--PNNPHYLRWALR 158 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSCG--GGHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCch--HHHHHHHHHHHH
Confidence 468999999999999999999988753 44 456666666554323479999999743 233345555544
No 327
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=30.16 E-value=40 Score=34.35 Aligned_cols=81 Identities=12% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCCccEEEEeCCCC--CCC--------------------HHHHHHHHHhhcccccccccccccchhhhccC
Q 003018 743 KKATELLMPPHQFDACFMDIQMP--EMD--------------------GFEATKIIREMEHNFNNRIRRGEVSIEAYENV 800 (856)
Q Consensus 743 ~eA~~~l~~~~~~DlilmDi~MP--~md--------------------G~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~ 800 (856)
.+.++.+ .....|+|-+++-.+ .|| +++.+++||+
T Consensus 35 ~~~~~~l-~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~---------------------- 91 (262)
T 1rd5_A 35 AEALRLL-DGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTP---------------------- 91 (262)
T ss_dssp HHHHHHH-HHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGG----------------------
T ss_pred HHHHHHH-HHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----------------------
Q ss_pred CCCCCcEEEEe--cCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHhhh
Q 003018 801 SNFHVPILAMT--ADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 847 (856)
Q Consensus 801 ~~~~~pIIalT--a~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 847 (856)
..++|+++|+ ........+.|.++|+|+++.-....+++.+.+...
T Consensus 92 -~~~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~ 139 (262)
T 1rd5_A 92 -ELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEA 139 (262)
T ss_dssp -GCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHH
T ss_pred -cCCCCEEEEecCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHH
No 328
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=28.96 E-value=75 Score=31.15 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=23.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCC
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGA 734 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~ 734 (856)
+.+|.-||-|+.....++..|++.|+
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~ 76 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPP 76 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999886
No 329
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=28.89 E-value=1.3e+02 Score=29.59 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=46.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCE---EEEE-cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAA---VVCV-ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~---v~~a-~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 778 (856)
+.+|.-||-++.....++..+++.|.. +... .+..+.+..+ ....||+||+|...+ +-.++.+.+..
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~-~~~~fD~V~~d~~~~--~~~~~l~~~~~ 151 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL-ANDSYQLVFGQVSPM--DLKALVDAAWP 151 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS-CTTCEEEEEECCCTT--THHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh-cCCCcCeEEEcCcHH--HHHHHHHHHHH
Confidence 458999999999999999999998865 5543 4555544433 246799999997543 33345555544
No 330
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=28.12 E-value=1e+02 Score=34.05 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=32.0
Q ss_pred CCeEEEEcCCH---HHHHHHHHHHhhcCCEEEEEcCH-------HHHHHHhCCCCCccEEEEeC
Q 003018 709 GRKILIVDDNN---VNLKVAAAGLKRYGAAVVCVERG-------KKATELLMPPHQFDACFMDI 762 (856)
Q Consensus 709 ~~~ILvVdDn~---~n~~~l~~~L~~~g~~v~~a~~g-------~eA~~~l~~~~~~DlilmDi 762 (856)
|+++++||-++ .....+...-...|..+..+..+ .++++.+. ...||+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~-~~~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK-LKFYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHH-HTTCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHH-hCCCCEEEEEC
Confidence 67899999886 22233333334567776655432 33455442 24699999998
No 331
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=28.06 E-value=1.6e+02 Score=26.70 Aligned_cols=43 Identities=5% Similarity=0.171 Sum_probs=28.7
Q ss_pred CCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHH-HHHhh
Q 003018 804 HVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY-REVSR 846 (856)
Q Consensus 804 ~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~-~~l~~ 846 (856)
..++.++|+.........+-..|.+.|+..+-...+.+ ..+++
T Consensus 52 g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~kp~~~~~~~~~~~ 95 (162)
T 2p9j_A 52 GITLAVISGRDSAPLITRLKELGVEEIYTGSYKKLEIYEKIKEK 95 (162)
T ss_dssp TCEEEEEESCCCHHHHHHHHHTTCCEEEECC--CHHHHHHHHHH
T ss_pred CCEEEEEeCCCcHHHHHHHHHcCCHhhccCCCCCHHHHHHHHHH
Confidence 36899999988777777777889999986543333433 34443
No 332
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=27.71 E-value=2.4e+02 Score=32.67 Aligned_cols=112 Identities=15% Similarity=0.212 Sum_probs=70.5
Q ss_pred CeEEEE----cCCHHHHHHH----HHHHhhcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCC----CCHHH-HH
Q 003018 710 RKILIV----DDNNVNLKVA----AAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE----MDGFE-AT 773 (856)
Q Consensus 710 ~~ILvV----dDn~~n~~~l----~~~L~~~g~~v~~a---~~g~eA~~~l~~~~~~DlilmDi~MP~----mdG~e-~~ 773 (856)
.+||+. |=+..-.+++ ..+|+..||+|+.. ...++.++.+. ++.+|+|.+..-|.. |..+. +.
T Consensus 603 GKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~-EedADVVGLSsLLTt~dihL~~MkevI 681 (763)
T 3kp1_A 603 LKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAI-ELKADAILASTIISHDDIHYKNMKRIH 681 (763)
T ss_dssp CEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHH-HTTCSEEEEECCCCGGGHHHHHHHHHH
T ss_pred CEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccCchhhHHHHHHHH
Confidence 478887 4455555433 57899999999854 35677777774 467999999988876 34332 34
Q ss_pred HHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeCCCCHHHHHHHHh
Q 003018 774 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 845 (856)
Q Consensus 774 ~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 845 (856)
+.+|+.. ....+||++= +..... .-+.+.|+|.|..-..+..++...+.
T Consensus 682 elLrE~G--------------------lrDkIkVIVG-Ga~~tq--d~AkeIGADa~f~DATeAVeVA~~Ll 730 (763)
T 3kp1_A 682 ELAVEKG--------------------IRDKIMIGCG-GTQVTP--EVAVKQGVDAGFGRGSKGIHVATFLV 730 (763)
T ss_dssp HHHHHTT--------------------CTTTSEEEEE-CTTCCH--HHHHTTTCSEEECTTCCHHHHHHHHH
T ss_pred HHHHhcC--------------------CCCCCEEEEE-CCCCCH--HHHHHcCCcEEECCcchHHHHHHHHH
Confidence 4455421 1123565543 332222 24568999999887777766665553
No 333
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=27.24 E-value=2.3e+02 Score=28.11 Aligned_cols=83 Identities=8% Similarity=0.069 Sum_probs=53.0
Q ss_pred HHhhcCCEEEEEcCH---HHHHHHhCCCCCccEEEEeCCCCCCCH-------HHHHHHHHhhcccccccccccccchhhh
Q 003018 728 GLKRYGAAVVCVERG---KKATELLMPPHQFDACFMDIQMPEMDG-------FEATKIIREMEHNFNNRIRRGEVSIEAY 797 (856)
Q Consensus 728 ~L~~~g~~v~~a~~g---~eA~~~l~~~~~~DlilmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 797 (856)
.+++.|..+-.+-+. .+.++.+..-...|+|+.=---|+.+| ++-++++|++-
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~----------------- 171 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY----------------- 171 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC-----------------
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhc-----------------
Confidence 677789887766543 344444432124788865444466555 44455555531
Q ss_pred ccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEeC
Q 003018 798 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 833 (856)
Q Consensus 798 ~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~K 833 (856)
.++ -|.+.+....++..+|.++|+|.++.=
T Consensus 172 -----~~~-~I~VdGGI~~~ti~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 172 -----KNL-NIQVDGGLNIETTEISASHGANIIVAG 201 (227)
T ss_dssp -----TTC-EEEEESSCCHHHHHHHHHHTCCEEEES
T ss_pred -----cCC-eEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 123 356788899999999999999988653
No 334
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=26.73 E-value=1.9e+02 Score=30.11 Aligned_cols=69 Identities=17% Similarity=0.310 Sum_probs=47.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhh--cC----CEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCC-CCH-------HHHH
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKR--YG----AAV-VCVERGKKATELLMPPHQFDACFMDIQMPE-MDG-------FEAT 773 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~--~g----~~v-~~a~~g~eA~~~l~~~~~~DlilmDi~MP~-mdG-------~e~~ 773 (856)
..+|..||=++.....++..+.. .| -.+ ....|+.+.+... ...||+|++|.-.|. ++| -++.
T Consensus 101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l 178 (314)
T 1uir_A 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT--EERYDVVIIDLTDPVGEDNPARLLYTVEFY 178 (314)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC--CCCEEEEEEECCCCBSTTCGGGGGSSHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc--CCCccEEEECCCCcccccCcchhccHHHHH
Confidence 35899999999999999888764 12 223 3456777766543 467999999987765 223 4667
Q ss_pred HHHHhh
Q 003018 774 KIIREM 779 (856)
Q Consensus 774 ~~IR~~ 779 (856)
+.+++.
T Consensus 179 ~~~~~~ 184 (314)
T 1uir_A 179 RLVKAH 184 (314)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 777653
No 335
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=26.48 E-value=1.7e+02 Score=30.18 Aligned_cols=90 Identities=18% Similarity=0.093 Sum_probs=0.0
Q ss_pred EEEEcCCHHH----HHHHHHHHhhcCCE---EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccc
Q 003018 712 ILIVDDNNVN----LKVAAAGLKRYGAA---VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 784 (856)
Q Consensus 712 ILvVdDn~~n----~~~l~~~L~~~g~~---v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~ 784 (856)
+||.||+... ...++..-+..+.. -..+.+-+++.+.+ ....|.|.+|-.-| +.++++.+.
T Consensus 169 ~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~--~aGaD~I~ld~~~~-----~~~k~av~~----- 236 (286)
T 1x1o_A 169 ILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEAL--EAGADLILLDNFPL-----EALREAVRR----- 236 (286)
T ss_dssp EEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHH--HHTCSEEEEESCCH-----HHHHHHHHH-----
T ss_pred eEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH--HcCCCEEEECCCCH-----HHHHHHHHH-----
Q ss_pred ccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeE
Q 003018 785 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 830 (856)
Q Consensus 785 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~y 830 (856)
..+++|+++ ++....+...+..++|+|.+
T Consensus 237 ----------------v~~~ipi~A-sGGIt~eni~~~a~tGvD~I 265 (286)
T 1x1o_A 237 ----------------VGGRVPLEA-SGNMTLERAKAAAEAGVDYV 265 (286)
T ss_dssp ----------------HTTSSCEEE-ESSCCHHHHHHHHHHTCSEE
T ss_pred ----------------hCCCCeEEE-EcCCCHHHHHHHHHcCCCEE
No 336
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=26.40 E-value=1.9e+02 Score=28.33 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=33.5
Q ss_pred CCcEEEEecCCCHHhHHHHHHcCCCeEEe------CCCCHHHHHHHHhh
Q 003018 804 HVPILAMTADVIQATYEECLRSGMDGYVS------KPFEAEQLYREVSR 846 (856)
Q Consensus 804 ~~pIIalTa~~~~~~~~~~~~aG~d~yl~------KP~~~~~L~~~l~~ 846 (856)
++||++-.+-...++..+++++|+|+++. .+.+.+++.+.+++
T Consensus 198 ~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~~~~~~~~l~~ 246 (253)
T 1h5y_A 198 RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQVKRYLKE 246 (253)
T ss_dssp SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHHH
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 58999887766678999999999999863 56677777776654
No 337
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=26.19 E-value=1.2e+02 Score=30.38 Aligned_cols=70 Identities=14% Similarity=0.238 Sum_probs=48.4
Q ss_pred Ccc-EEEEeCCCCC-CC--HHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCe
Q 003018 754 QFD-ACFMDIQMPE-MD--GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 829 (856)
Q Consensus 754 ~~D-lilmDi~MP~-md--G~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~ 829 (856)
.++ ++++++.--. +. .++.+++|++. ..+|||+--+-...++..+++++|+|+
T Consensus 164 G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~-----------------------~~ipvia~GGI~~~~d~~~~~~~Gadg 220 (253)
T 1thf_D 164 GAGEILLTSIDRDGTKSGYDTEMIRFVRPL-----------------------TTLPIIASGGAGKMEHFLEAFLAGADA 220 (253)
T ss_dssp TCSEEEEEETTTTTSCSCCCHHHHHHHGGG-----------------------CCSCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred CCCEEEEEeccCCCCCCCCCHHHHHHHHHh-----------------------cCCCEEEECCCCCHHHHHHHHHcCChH
Confidence 356 4556654211 12 27888888752 258999988777789999999999998
Q ss_pred EEe------CCCCHHHHHHHHhh
Q 003018 830 YVS------KPFEAEQLYREVSR 846 (856)
Q Consensus 830 yl~------KP~~~~~L~~~l~~ 846 (856)
++. .|++.+++.+.+++
T Consensus 221 v~vGsal~~~~~~~~~~~~~l~~ 243 (253)
T 1thf_D 221 ALAASVFHFREIDVRELKEYLKK 243 (253)
T ss_dssp EEESHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHH
Confidence 753 46677777766643
No 338
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=26.11 E-value=3.5e+02 Score=29.16 Aligned_cols=91 Identities=13% Similarity=0.100 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhc-CCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCC---------C--CCCHHHHHHHHHhhcccccc
Q 003018 720 VNLKVAAAGLKRY-GAAVV--CVERGKKATELLMPPHQFDACFMDIQM---------P--EMDGFEATKIIREMEHNFNN 785 (856)
Q Consensus 720 ~n~~~l~~~L~~~-g~~v~--~a~~g~eA~~~l~~~~~~DlilmDi~M---------P--~mdG~e~~~~IR~~~~~~~~ 785 (856)
...+.++.+-+.. +..|. .+.+.++|..+.. ...|.|..-... + +.-.+++++.+++.-+
T Consensus 180 ~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~--~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~---- 253 (404)
T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS--VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACN---- 253 (404)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT--TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh--cCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHh----
Confidence 3444444443444 66655 4677777776653 458988872110 0 1224566666665211
Q ss_pred cccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 786 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 786 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
...+|||+.-+-.+.++..+++.+|+|....
T Consensus 254 ----------------~~~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 254 ----------------NTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp ----------------TSSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ----------------hcCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 1268999988888899999999999998765
No 339
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=26.08 E-value=1.6e+02 Score=29.22 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=44.6
Q ss_pred CeEEEEcCC------HHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 003018 710 RKILIVDDN------NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778 (856)
Q Consensus 710 ~~ILvVdDn------~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 778 (856)
++|++|+-. ..|...+..+|++.|+++..+....+..+.+. ..|.|++ |+-+-..+++.+++
T Consensus 32 ~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~---~ad~I~l----pGG~~~~~~~~l~~ 99 (229)
T 1fy2_A 32 RSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE---KAEIIIV----GGGNTFQLLKESRE 99 (229)
T ss_dssp CEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHH---HCSEEEE----CCSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHh---cCCEEEE----CCCcHHHHHHHHHH
Confidence 589999744 37888889999999999888732212223332 2578875 88888888888886
No 340
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=26.03 E-value=1.2e+02 Score=35.34 Aligned_cols=49 Identities=24% Similarity=0.286 Sum_probs=38.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 003018 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760 (856)
Q Consensus 707 ~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~Dlilm 760 (856)
..|++|||+|-..-+...+...|.+.|+.+....+... . ....||.||+
T Consensus 444 ~~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~----~-~~~~~DgIIl 492 (645)
T 3r75_A 444 LSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA----V-DLARYDVVVM 492 (645)
T ss_dssp STTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC----C-CGGGCSEEEE
T ss_pred CCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc----c-cccCCCEEEE
Confidence 46789999999988889999999999999887754432 1 1235888887
No 341
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=25.78 E-value=1e+02 Score=31.18 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=30.1
Q ss_pred CCcEEEEecCCCHHhHHHHHHcCCCeEEeC--CC----CHHHHHHHHh
Q 003018 804 HVPILAMTADVIQATYEECLRSGMDGYVSK--PF----EAEQLYREVS 845 (856)
Q Consensus 804 ~~pIIalTa~~~~~~~~~~~~aG~d~yl~K--P~----~~~~L~~~l~ 845 (856)
.+||++...-.+.++..+++++|+|+.+.= ++ +++.+.+.+.
T Consensus 74 ~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~~~~~~~~~~~~~~~ 121 (266)
T 2w6r_A 74 TLPIIASGGAGKMEHFLEAFLAGADKALAASVFHFREIDMRELKEYLK 121 (266)
T ss_dssp CSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC------CHHHHHHCC
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHHhCCCCHHHHHHHHH
Confidence 589999877777888999999999998753 33 4455555433
No 342
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=25.28 E-value=1.3e+02 Score=28.32 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=40.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEEeC
Q 003018 707 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 762 (856)
Q Consensus 707 ~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi 762 (856)
+.+++|-++..... ...|++.|..+..+.+..++++++. .+..|++++|.
T Consensus 110 L~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~-~g~~D~~~~~~ 159 (228)
T 2pyy_A 110 LPGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQ-TKKADAVVFDA 159 (228)
T ss_dssp CTTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHH-TTSSSEEEEEH
T ss_pred cCCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHH-cCCCCEEEecH
Confidence 56789998887763 3456668999999999999999996 57799999984
No 343
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=25.19 E-value=5.7e+02 Score=26.17 Aligned_cols=100 Identities=14% Similarity=0.073 Sum_probs=62.1
Q ss_pred HHHHHhhcCC-EEEEE--cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCC
Q 003018 725 AAAGLKRYGA-AVVCV--ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS 801 (856)
Q Consensus 725 l~~~L~~~g~-~v~~a--~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~ 801 (856)
++..|+. |. .+-.. .+..+.++.+. ...+|.|++|++=...+--++...++...
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~-~~GaD~v~lDlEh~~~~~~~~~~~l~a~~--------------------- 86 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLA-GAGFDWLLIDGEHAPNNVQTVLTQLQAIA--------------------- 86 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHH-TSCCSEEEEESSSSSCCHHHHHHHHHHHT---------------------
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHH-hCCCCEEEEeCCCccchHHHHHHHHHHHH---------------------
Confidence 4555554 44 33332 33444555553 35699999999765555445555555421
Q ss_pred CCCCcEEEEecCCCHHhHHHHHHcCCCeEEe-CCCCHHHHHHHHhhh
Q 003018 802 NFHVPILAMTADVIQATYEECLRSGMDGYVS-KPFEAEQLYREVSRF 847 (856)
Q Consensus 802 ~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~-KP~~~~~L~~~l~~~ 847 (856)
....|+++=+...+..+...++++|+++.+. |--+.+++...++..
T Consensus 87 ~~~~~~~VRv~~~d~~di~~~ld~ga~~ImlP~V~saeea~~~~~~~ 133 (287)
T 2v5j_A 87 PYPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRAT 133 (287)
T ss_dssp TSSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHT
T ss_pred hcCCCEEEEECCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHh
Confidence 1135677777777788999999999998644 444678877766543
No 344
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=24.51 E-value=1.4e+02 Score=28.27 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHhh--cCCEEEEEcC--HHHHHHHhCCCCCccEEEEeCC
Q 003018 708 LGRKILIVDDNNVNLKVAAAGLKR--YGAAVVCVER--GKKATELLMPPHQFDACFMDIQ 763 (856)
Q Consensus 708 ~~~~ILvVdDn~~n~~~l~~~L~~--~g~~v~~a~~--g~eA~~~l~~~~~~DlilmDi~ 763 (856)
.|+++|+||=++.. -+...+.. .++.+..+.. -.+.++.+. ..||+||+|.-
T Consensus 29 ~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~--~~yD~viiD~~ 84 (206)
T 4dzz_A 29 SGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAASEKDVYGIRKDL--ADYDFAIVDGA 84 (206)
T ss_dssp TTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCSHHHHHTHHHHT--TTSSEEEEECC
T ss_pred CCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCcHHHHHHHHHhc--CCCCEEEEECC
Confidence 36789999987532 23344433 3455555443 223344443 35999999973
No 345
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=24.37 E-value=1.2e+02 Score=31.57 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=32.5
Q ss_pred CCeEEEEcCCH---HHHHHHHHHHhhcCCEEEEEc---CH----HHHHHHhCCCCCccEEEEeC
Q 003018 709 GRKILIVDDNN---VNLKVAAAGLKRYGAAVVCVE---RG----KKATELLMPPHQFDACFMDI 762 (856)
Q Consensus 709 ~~~ILvVdDn~---~n~~~l~~~L~~~g~~v~~a~---~g----~eA~~~l~~~~~~DlilmDi 762 (856)
+++++++|-+. .....+....++.|..+.... +. .++++.+. ...||+||+|.
T Consensus 126 g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~-~~~~D~ViIDT 188 (297)
T 1j8m_F 126 GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL-SEKMEIIIVDT 188 (297)
T ss_dssp TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH-HTTCSEEEEEC
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH-hCCCCEEEEeC
Confidence 56899999873 333334444555677766543 22 24555542 24699999998
No 346
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=24.35 E-value=2.3e+02 Score=28.95 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=47.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcC-----CEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH-----HHHHHHHHh
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYG-----AAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIRE 778 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g-----~~v-~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG-----~e~~~~IR~ 778 (856)
.+|..||=++...+.++..+...+ -.+ ....|+.+.+... ...||+|++|.-.|.... -++.+.+++
T Consensus 103 ~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~ 180 (283)
T 2i7c_A 103 ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV--TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYN 180 (283)
T ss_dssp CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC--CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC--CCCceEEEEcCCCCCCcchhhhHHHHHHHHHH
Confidence 589999999999999998886531 223 3456777766543 457999999986654322 366666665
Q ss_pred h
Q 003018 779 M 779 (856)
Q Consensus 779 ~ 779 (856)
.
T Consensus 181 ~ 181 (283)
T 2i7c_A 181 A 181 (283)
T ss_dssp H
T ss_pred h
Confidence 3
No 347
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=24.05 E-value=5.6e+02 Score=25.77 Aligned_cols=85 Identities=12% Similarity=0.047 Sum_probs=55.2
Q ss_pred CHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHH
Q 003018 741 RGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820 (856)
Q Consensus 741 ~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~ 820 (856)
...+.++.+. ...+|.|++|++=...+--++...++... ....|+++=+...+..+..
T Consensus 27 ~~p~~~e~a~-~~GaD~v~lDlE~~~~~~~~~~~~~~a~~---------------------~~~~~~~VRv~~~~~~~i~ 84 (267)
T 2vws_A 27 TTAYMAEIAA-TSGYDWLLIDGEHAPNTIQDLYHQLQAVA---------------------PYASQPVIRPVEGSKPLIK 84 (267)
T ss_dssp CCHHHHHHHH-TTCCSEEEEETTTSCCCHHHHHHHHHHHT---------------------TSSSEEEEECSSCCHHHHH
T ss_pred CCHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHHHHH---------------------hCCCcEEEEeCCCCHHHHH
Confidence 3444455553 35699999999765566555555555432 1134566666666788889
Q ss_pred HHHHcCCCeEEe-CCCCHHHHHHHHhhh
Q 003018 821 ECLRSGMDGYVS-KPFEAEQLYREVSRF 847 (856)
Q Consensus 821 ~~~~aG~d~yl~-KP~~~~~L~~~l~~~ 847 (856)
.++++|+++.+. |--+.+++...++..
T Consensus 85 ~~l~~g~~~I~~P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 85 QVLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_dssp HHHHTTCCEEEECCCCSHHHHHHHHHHT
T ss_pred HHHHhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 999999997544 445778877666543
No 348
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=24.02 E-value=1.7e+02 Score=28.18 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=34.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 760 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l~~~~~~Dlilm 760 (856)
++|+|||=-.-|...+...|++.|++++.+.+.++. + .+|.|++
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l-~------~~D~lil 46 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV-L------AADKLFL 46 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH-H------HCSEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH-h------CCCEEEE
Confidence 479999977777788899999999999998876542 2 2577776
No 349
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=23.34 E-value=1.8e+02 Score=28.62 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=47.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCE--EE-EEcCHHHHHHHhC----CCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLM----PPHQFDACFMDIQMPEMDGFEATKIIRE 778 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~--v~-~a~~g~eA~~~l~----~~~~~DlilmDi~MP~mdG~e~~~~IR~ 778 (856)
+.+|.-+|-++.....++..+++.|.. +. ...+..+.+..+. ....||+||+|...+ +-.++.+.+..
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~--~~~~~l~~~~~ 169 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP--NYIKYHERLMK 169 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG--GHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH--HHHHHHHHHHH
Confidence 458999999999999999999988862 44 4566766655441 135799999996432 23344555544
No 350
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=23.21 E-value=2e+02 Score=30.13 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=47.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhc-CCEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCC-----CHHHHHHHHHh
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEM-----DGFEATKIIRE 778 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~-g~~v-~~a~~g~eA~~~l~~~~~~DlilmDi~MP~m-----dG~e~~~~IR~ 778 (856)
+.+|.+||=++...+.++..+... +-.+ ....|+.+.+..+ ....||+|++|...|.. ...++.+.+++
T Consensus 113 ~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~-~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r 188 (317)
T 3gjy_A 113 QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESF-TPASRDVIIRDVFAGAITPQNFTTVEFFEHCHR 188 (317)
T ss_dssp TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTC-CTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHH
T ss_pred CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhc-cCCCCCEEEECCCCccccchhhhHHHHHHHHHH
Confidence 347999999999999998887643 2223 3467888776644 24679999999865532 12466666665
No 351
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=23.04 E-value=70 Score=31.94 Aligned_cols=44 Identities=16% Similarity=0.071 Sum_probs=30.7
Q ss_pred CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEE--EEecCCCHHhHHHHHHcCCCeEEeCCC
Q 003018 768 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL--AMTADVIQATYEECLRSGMDGYVSKPF 835 (856)
Q Consensus 768 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pII--alTa~~~~~~~~~~~~aG~d~yl~KP~ 835 (856)
.|.+.++.||+. .+.|+. +|+.+ .....+.|.++|+|+...-..
T Consensus 49 ~g~~~v~~lr~~-----------------------~~~~~~vhlmv~d-p~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 49 IGPLIVDAIRPL-----------------------TKKTLDVHLMIVE-PEKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp BCHHHHHHHGGG-----------------------CCSEEEEEEESSS-GGGTHHHHHHHTCSEEEEECS
T ss_pred hhHHHHHHHHhh-----------------------cCCcEEEEEEccC-HHHHHHHHHHcCCCEEEECcc
Confidence 367899999863 134555 77754 345678899999998865544
No 352
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=22.94 E-value=2.8e+02 Score=26.37 Aligned_cols=67 Identities=9% Similarity=0.032 Sum_probs=45.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhcCC-EEEEE-cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCV-ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 778 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~g~-~v~~a-~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 778 (856)
.+|.-||=++.....++..++..|. .+... .|..+.+.. ....||+|++|.-....+-.++++.+++
T Consensus 78 ~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~~~fD~V~~~~p~~~~~~~~~l~~l~~ 146 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ--KGTPHNIVFVDPPFRRGLLEETINLLED 146 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS--CCCCEEEEEECCSSSTTTHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh--cCCCCCEEEECCCCCCCcHHHHHHHHHh
Confidence 4799999999999999999988875 44443 344443321 2457999999854333445566777764
No 353
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=22.35 E-value=26 Score=34.24 Aligned_cols=56 Identities=13% Similarity=0.184 Sum_probs=34.0
Q ss_pred EeCCCCC--CCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEE--EecCCCHHhHHHHHHcCCCeEEeCCC
Q 003018 760 MDIQMPE--MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA--MTADVIQATYEECLRSGMDGYVSKPF 835 (856)
Q Consensus 760 mDi~MP~--mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIa--lTa~~~~~~~~~~~~aG~d~yl~KP~ 835 (856)
+++.+|- .+|.+.++.||+. .+..||++ ++.+......+.+.++|+|....-+.
T Consensus 29 iev~~~~~~~~g~~~i~~l~~~----------------------~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~ 86 (207)
T 3ajx_A 29 IELGTPLIKAEGLSVITAVKKA----------------------HPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGS 86 (207)
T ss_dssp EEECHHHHHHHCTHHHHHHHHH----------------------STTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred EEECcHHHHhhCHHHHHHHHHh----------------------CCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEecc
Confidence 4555542 4567778888763 12457764 55542233367888999988876665
Q ss_pred CH
Q 003018 836 EA 837 (856)
Q Consensus 836 ~~ 837 (856)
..
T Consensus 87 ~~ 88 (207)
T 3ajx_A 87 AD 88 (207)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 354
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=22.11 E-value=2.1e+02 Score=28.43 Aligned_cols=30 Identities=17% Similarity=0.093 Sum_probs=26.6
Q ss_pred CCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 803 FHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 803 ~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
..+|+++...-.+.++.++++++|+|..+.
T Consensus 74 ~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 74 VFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 368999999988899999999999998765
No 355
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=22.10 E-value=4.7e+02 Score=29.10 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=63.8
Q ss_pred eEEEEc----CCHHHHHHHHHHHhhc-CCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCCCC------------CCHHH
Q 003018 711 KILIVD----DNNVNLKVAAAGLKRY-GAAVVC--VERGKKATELLMPPHQFDACFMDIQMPE------------MDGFE 771 (856)
Q Consensus 711 ~ILvVd----Dn~~n~~~l~~~L~~~-g~~v~~--a~~g~eA~~~l~~~~~~DlilmDi~MP~------------mdG~e 771 (856)
.++++| ..+.....++.+-+.+ +..|.. +.+.++|..+.. ...|.|.+-+. |+ ...++
T Consensus 243 d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~--aGaD~I~vg~g-~Gs~~~t~~~~g~g~p~~~ 319 (490)
T 4avf_A 243 DVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAE--AGADAVKVGIG-PGSICTTRIVAGVGVPQIS 319 (490)
T ss_dssp SEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH--TTCSEEEECSS-CSTTCHHHHHTCBCCCHHH
T ss_pred ceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHH--cCCCEEEECCC-CCcCCCccccCCCCccHHH
Confidence 466665 3444455666666665 444443 678888877663 45899887321 11 22455
Q ss_pred HHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 772 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 772 ~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
++.++++.- ....+|||+--+-...++..+++.+|++..+.
T Consensus 320 ~l~~v~~~~--------------------~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 320 AIANVAAAL--------------------EGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp HHHHHHHHH--------------------TTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh--------------------ccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 566665421 12358999988888899999999999998754
No 356
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=21.84 E-value=1.4e+02 Score=31.23 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=0.0
Q ss_pred EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCC
Q 003018 736 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 815 (856)
Q Consensus 736 v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~ 815 (856)
.+.+++-+|+.+.+ ....|+|.+| +|+.-+=-++.+.++. -..|..|+...
T Consensus 211 eVEv~tl~e~~eAl--~aGaDiImLD-n~s~~~l~~av~~~~~--------------------------~v~leaSGGIt 261 (300)
T 3l0g_A 211 AIECDNISQVEESL--SNNVDMILLD-NMSISEIKKAVDIVNG--------------------------KSVLEVSGCVN 261 (300)
T ss_dssp EEEESSHHHHHHHH--HTTCSEEEEE-SCCHHHHHHHHHHHTT--------------------------SSEEEEESSCC
T ss_pred EEEECCHHHHHHHH--HcCCCEEEEC-CCCHHHHHHHHHhhcC--------------------------ceEEEEECCCC
Q ss_pred HHhHHHHHHcCCCeE
Q 003018 816 QATYEECLRSGMDGY 830 (856)
Q Consensus 816 ~~~~~~~~~aG~d~y 830 (856)
.+...+..+.|+|.+
T Consensus 262 ~~~i~~~A~tGVD~I 276 (300)
T 3l0g_A 262 IRNVRNIALTGVDYI 276 (300)
T ss_dssp TTTHHHHHTTTCSEE
T ss_pred HHHHHHHHHcCCCEE
No 357
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=21.83 E-value=2.7e+02 Score=27.00 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=43.6
Q ss_pred EcCHHHHHHHhCCCCCccEEEEeCCCC--------CCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEE
Q 003018 739 VERGKKATELLMPPHQFDACFMDIQMP--------EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM 810 (856)
Q Consensus 739 a~~g~eA~~~l~~~~~~DlilmDi~MP--------~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIal 810 (856)
+.+..++..... ..+|.|++..-.| ..-|++.++++++. ..++||++.
T Consensus 123 ~~t~~e~~~a~~--~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~----------------------~~~~pvia~ 178 (227)
T 2tps_A 123 AHTMSEVKQAEE--DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ----------------------GISIPIVGI 178 (227)
T ss_dssp ECSHHHHHHHHH--HTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT----------------------TCCCCEEEE
T ss_pred cCCHHHHHHHHh--CCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHh----------------------CCCCCEEEE
Confidence 466667655442 3589998621111 12367888888752 113788876
Q ss_pred ecCCCHHhHHHHHHcCCCeEE
Q 003018 811 TADVIQATYEECLRSGMDGYV 831 (856)
Q Consensus 811 Ta~~~~~~~~~~~~aG~d~yl 831 (856)
-+- ..+...+++++|++++.
T Consensus 179 GGI-~~~nv~~~~~~Ga~gv~ 198 (227)
T 2tps_A 179 GGI-TIDNAAPVIQAGADGVS 198 (227)
T ss_dssp SSC-CTTTSHHHHHTTCSEEE
T ss_pred cCC-CHHHHHHHHHcCCCEEE
Confidence 544 48888889999999875
No 358
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=21.57 E-value=5.2e+02 Score=26.00 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=55.9
Q ss_pred CHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHH
Q 003018 741 RGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 820 (856)
Q Consensus 741 ~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~ 820 (856)
+..+.+++.. ...||.|++|++--..+--.+...++.... ...++++=....+..+..
T Consensus 25 ~~p~~~e~a~-~~g~D~vilDlEhav~~~~k~~~~l~a~~~---------------------~~~~~~VRVn~~~~~di~ 82 (261)
T 3qz6_A 25 YNPDIVRIYA-EAGLDYFIVDCEHAAYTFREINHLVSVAKN---------------------AGVSVLVRIPQVDRAHVQ 82 (261)
T ss_dssp CCTTHHHHHH-HTTCSEEEEESSSSCCCHHHHHHHHHHHHH---------------------HTCEEEEECSSCCHHHHH
T ss_pred CCHHHHHHHh-cCCcCEEEEeccCCCCCHHHHHHHHHHHhh---------------------cCCeEEEEeCCCCHHHHH
Confidence 4455555553 346999999999888877777777765321 023344444445667899
Q ss_pred HHHHcCCCeEEe-CCCCHHHHHHHHhhh
Q 003018 821 ECLRSGMDGYVS-KPFEAEQLYREVSRF 847 (856)
Q Consensus 821 ~~~~aG~d~yl~-KP~~~~~L~~~l~~~ 847 (856)
.++++|+++.+. |--+.+++...++..
T Consensus 83 ~~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 83 RLLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 999999998654 445677777666543
No 359
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=21.52 E-value=67 Score=33.06 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=29.0
Q ss_pred CCcEEEEecC------CCHHhHHHHHHcCCCeEEeCCCCHH---HHHHHHhh
Q 003018 804 HVPILAMTAD------VIQATYEECLRSGMDGYVSKPFEAE---QLYREVSR 846 (856)
Q Consensus 804 ~~pIIalTa~------~~~~~~~~~~~aG~d~yl~KP~~~~---~L~~~l~~ 846 (856)
++||++|+-. ........|.++|+|+++.--+..+ ++...+++
T Consensus 91 ~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~ 142 (271)
T 1ujp_A 91 EKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQE 142 (271)
T ss_dssp CSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHH
T ss_pred CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHH
Confidence 5899998622 2245677799999999998766444 34444443
No 360
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=21.29 E-value=1.6e+02 Score=33.29 Aligned_cols=97 Identities=19% Similarity=0.156 Sum_probs=0.0
Q ss_pred eEEEEcCC------HHHHHHHHHHHh-----------hcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHH-H
Q 003018 711 KILIVDDN------NVNLKVAAAGLK-----------RYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE-A 772 (856)
Q Consensus 711 ~ILvVdDn------~~n~~~l~~~L~-----------~~g~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e-~ 772 (856)
++.|||++ .....+++.... ..|..+-.-.+..+.++.+. ....|+|.+|...|.-.+.. +
T Consensus 209 ~lpVVDe~g~l~GiIT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~era~aLv-eaGvd~I~Id~a~g~~~~v~~~ 287 (511)
T 3usb_A 209 KLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTRIDALV-KASVDAIVLDTAHGHSQGVIDK 287 (511)
T ss_dssp EEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHH-HTTCSEEEEECSCTTSHHHHHH
T ss_pred EEEEEeCCCCEeeeccHHHHHHhhhcccchhhhccceeeeeeeeeccchHHHHHHHH-hhccceEEecccccchhhhhhH
Q ss_pred HHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEE
Q 003018 773 TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 831 (856)
Q Consensus 773 ~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 831 (856)
+++||+ ..+.+||++-.-. ..+....+.++|+|...
T Consensus 288 i~~i~~----------------------~~~~~~vi~g~v~-t~e~a~~~~~aGad~i~ 323 (511)
T 3usb_A 288 VKEVRA----------------------KYPSLNIIAGNVA-TAEATKALIEAGANVVK 323 (511)
T ss_dssp HHHHHH----------------------HCTTSEEEEEEEC-SHHHHHHHHHHTCSEEE
T ss_pred HHHHHH----------------------hCCCceEEeeeec-cHHHHHHHHHhCCCEEE
No 361
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=21.18 E-value=2.2e+02 Score=23.89 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=29.4
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHh
Q 003018 712 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 749 (856)
Q Consensus 712 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA~~~l 749 (856)
+|+-|.+..-....+.-++..||+|.-+.+..+|+..+
T Consensus 80 lllqdqdeneleefkrkiesqgyevrkvtddeealkiv 117 (134)
T 2lci_A 80 LLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIV 117 (134)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHH
T ss_pred EEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHH
Confidence 34555566667778888888899999999999998865
No 362
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=21.11 E-value=2.7e+02 Score=29.11 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=56.2
Q ss_pred HHHHhhcCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCC-----CCCHHHHHHHHHhhcccccccccccccchhhhcc
Q 003018 726 AAGLKRYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMP-----EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYEN 799 (856)
Q Consensus 726 ~~~L~~~g~~v~~-a~~g~eA~~~l~~~~~~DlilmDi~MP-----~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~ 799 (856)
...+++.|..|.. +.+.++|..... ...|.|+.+-.-+ ....+++++++++.
T Consensus 117 ~~~l~~~g~~v~~~v~s~~~a~~a~~--~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~-------------------- 174 (326)
T 3bo9_A 117 IRELKENGTKVIPVVASDSLARMVER--AGADAVIAEGMESGGHIGEVTTFVLVNKVSRS-------------------- 174 (326)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHH--TTCSCEEEECTTSSEECCSSCHHHHHHHHHHH--------------------
T ss_pred HHHHHHcCCcEEEEcCCHHHHHHHHH--cCCCEEEEECCCCCccCCCccHHHHHHHHHHH--------------------
Confidence 3456667876654 567777766553 3478888764211 13457788887752
Q ss_pred CCCCCCcEEEEecCCCHHhHHHHHHcCCCeEE
Q 003018 800 VSNFHVPILAMTADVIQATYEECLRSGMDGYV 831 (856)
Q Consensus 800 ~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 831 (856)
..+|||+--+-.+.++..+++.+|++++.
T Consensus 175 ---~~iPviaaGGI~~~~dv~~al~~GA~gV~ 203 (326)
T 3bo9_A 175 ---VNIPVIAAGGIADGRGMAAAFALGAEAVQ 203 (326)
T ss_dssp ---CSSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred ---cCCCEEEECCCCCHHHHHHHHHhCCCEEE
Confidence 25899988777779999999999999875
No 363
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=21.06 E-value=2.9e+02 Score=28.91 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=53.7
Q ss_pred HHHhhcCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCC-----CCCHHHHHHHHHhhcccccccccccccchhhhccC
Q 003018 727 AGLKRYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMP-----EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENV 800 (856)
Q Consensus 727 ~~L~~~g~~v~~-a~~g~eA~~~l~~~~~~DlilmDi~MP-----~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~ 800 (856)
..+++.|..+.. +.+.++|..... ...|.|+.+-.-. ....+++++++++.
T Consensus 104 ~~l~~~g~~v~~~v~~~~~a~~~~~--~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~--------------------- 160 (332)
T 2z6i_A 104 ERFHEAGIIVIPVVPSVALAKRMEK--IGADAVIAEGMEAGGHIGKLTTMTLVRQVATA--------------------- 160 (332)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHH--TTCSCEEEECTTSSEECCSSCHHHHHHHHHHH---------------------
T ss_pred HHHHHcCCeEEEEeCCHHHHHHHHH--cCCCEEEEECCCCCCCCCCccHHHHHHHHHHh---------------------
Confidence 344556766553 566666655442 3478888763211 23457888888752
Q ss_pred CCCCCcEEEEecCCCHHhHHHHHHcCCCeEE
Q 003018 801 SNFHVPILAMTADVIQATYEECLRSGMDGYV 831 (856)
Q Consensus 801 ~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 831 (856)
..+|||+--+-.+.++..+++..|+|+..
T Consensus 161 --~~iPViaaGGI~~~~~~~~al~~GAdgV~ 189 (332)
T 2z6i_A 161 --ISIPVIAAGGIADGEGAAAGFMLGAEAVQ 189 (332)
T ss_dssp --CSSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred --cCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 25899988777779999999999999864
No 364
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=20.88 E-value=2e+02 Score=29.72 Aligned_cols=83 Identities=14% Similarity=0.037 Sum_probs=49.1
Q ss_pred HhhcC-CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCC----CCCHHH----------HHHHHHhhcccccccccccccc
Q 003018 729 LKRYG-AAVVCVERGKKATELLMPPHQFDACFMDIQMP----EMDGFE----------ATKIIREMEHNFNNRIRRGEVS 793 (856)
Q Consensus 729 L~~~g-~~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP----~mdG~e----------~~~~IR~~~~~~~~~~~~g~~~ 793 (856)
.++.| +.+.|+.|.++|..+.. -.+|+|... || +.-|.+ .++++.+.-+
T Consensus 159 A~~~gL~Ti~~v~~~eeA~amA~--agpDiI~~h--~glT~gglIG~~~avs~~~~~e~i~~i~~a~~------------ 222 (286)
T 2p10_A 159 AHKLDLLTTPYVFSPEDAVAMAK--AGADILVCH--MGLTTGGAIGARSGKSMDDCVSLINECIEAAR------------ 222 (286)
T ss_dssp HHHTTCEECCEECSHHHHHHHHH--HTCSEEEEE--CSCC---------CCCHHHHHHHHHHHHHHHH------------
T ss_pred HHHCCCeEEEecCCHHHHHHHHH--cCCCEEEEC--CCCCCCCcccCCCcccHHHhHHHHHHHHHHHH------------
Confidence 34566 46789999999998873 468999874 56 544432 3333322111
Q ss_pred hhhhccCCCCCCcEEEEe-cCCCHHhHHHHHHc--CCCeEEeC
Q 003018 794 IEAYENVSNFHVPILAMT-ADVIQATYEECLRS--GMDGYVSK 833 (856)
Q Consensus 794 ~~~~~~~~~~~~pIIalT-a~~~~~~~~~~~~a--G~d~yl~K 833 (856)
..++++.++.-- .-...++...+++. |+++|+.-
T Consensus 223 ------~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 223 ------TIRDDIIILSHGGPIANPEDARFILDSCQGCHGFYGA 259 (286)
T ss_dssp ------HHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEES
T ss_pred ------HhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEee
Confidence 013344333222 23678999999999 99999864
No 365
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=20.85 E-value=2.7e+02 Score=27.06 Aligned_cols=91 Identities=14% Similarity=0.061 Sum_probs=60.9
Q ss_pred hhcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCC--CCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCc
Q 003018 730 KRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPE--MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVP 806 (856)
Q Consensus 730 ~~~g~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~--mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~p 806 (856)
+++|..+. -+.+..|+.+... ...|.|-+ -|. .-|.+.++.+|.. .+++|
T Consensus 101 ~~~g~~~i~G~~t~~e~~~A~~--~Gad~v~~---fpa~~~gG~~~lk~l~~~----------------------~~~ip 153 (207)
T 2yw3_A 101 QARGVPYLPGVLTPTEVERALA--LGLSALKF---FPAEPFQGVRVLRAYAEV----------------------FPEVR 153 (207)
T ss_dssp HHHTCCEEEEECSHHHHHHHHH--TTCCEEEE---TTTTTTTHHHHHHHHHHH----------------------CTTCE
T ss_pred HHhCCCEEecCCCHHHHHHHHH--CCCCEEEE---ecCccccCHHHHHHHHhh----------------------CCCCc
Confidence 33565433 4778888887763 35788766 453 2388988888862 23688
Q ss_pred EEEEecCCCHHhHHHHHHcCCCeEE-----eCCCCHHHHHHHHhhhCC
Q 003018 807 ILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREVSRFFP 849 (856)
Q Consensus 807 IIalTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~~~l~~~~~ 849 (856)
+++ ++....+...+++++|+++.. .+ -+.+++.+..++|..
T Consensus 154 vva-iGGI~~~n~~~~l~aGa~~vavgSai~~-~d~~~i~~~a~~~~~ 199 (207)
T 2yw3_A 154 FLP-TGGIKEEHLPHYAALPNLLAVGGSWLLQ-GNLEAVRAKVRAAKA 199 (207)
T ss_dssp EEE-BSSCCGGGHHHHHTCSSBSCEEESGGGS-SCHHHHHHHHHHHHH
T ss_pred EEE-eCCCCHHHHHHHHhCCCcEEEEehhhhC-CCHHHHHHHHHHHHH
Confidence 875 566678899999999998753 34 455566666666544
No 366
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=20.83 E-value=2e+02 Score=28.19 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=45.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhCC-C--CCccEEEEeCCCCCCCHHHHHHHHHh
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMP-P--HQFDACFMDIQMPEMDGFEATKIIRE 778 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~--~v~-~a~~g~eA~~~l~~-~--~~~DlilmDi~MP~mdG~e~~~~IR~ 778 (856)
+.+|..+|-++.....++..+++.|. .+. ...+..+.+..+.. . ..||+||+|... .+-.++.+.+..
T Consensus 97 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~ 170 (232)
T 3cbg_A 97 DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADK--RNYPRYYEIGLN 170 (232)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCG--GGHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCH--HHHHHHHHHHHH
Confidence 35899999999999999999988776 243 45666665554421 1 579999999642 222344555543
No 367
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=20.78 E-value=1.8e+02 Score=30.31 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=43.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhc--C---CEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH-----HHHHHHHH
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRY--G---AAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIR 777 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~--g---~~v~-~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG-----~e~~~~IR 777 (856)
..+|..||=++.....++..+... | -.+. ...|+.+.+.. ....||+|++|.--|.... -++.+.++
T Consensus 132 ~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~ 209 (314)
T 2b2c_A 132 VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN--HKNEFDVIITDSSDPVGPAESLFGQSYYELLR 209 (314)
T ss_dssp CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH--CTTCEEEEEECCC-------------HHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh--cCCCceEEEEcCCCCCCcchhhhHHHHHHHHH
Confidence 358999999999999999888653 2 2333 45677766654 3467999999985543211 35566665
Q ss_pred h
Q 003018 778 E 778 (856)
Q Consensus 778 ~ 778 (856)
+
T Consensus 210 ~ 210 (314)
T 2b2c_A 210 D 210 (314)
T ss_dssp H
T ss_pred h
Confidence 4
No 368
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=20.62 E-value=3.6e+02 Score=27.76 Aligned_cols=71 Identities=14% Similarity=0.062 Sum_probs=47.8
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEecCC
Q 003018 735 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 814 (856)
Q Consensus 735 ~v~~a~~g~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 814 (856)
....+.+-+++.+.+. ...|+|.+|-.-| -+=-++.+.++.. .+++ .|..|+..
T Consensus 197 I~Vev~t~eea~eal~--aGaD~I~LDn~~~-~~~~~~v~~l~~~----------------------~~~v-~ieaSGGI 250 (284)
T 1qpo_A 197 CEVEVDSLEQLDAVLP--EKPELILLDNFAV-WQTQTAVQRRDSR----------------------APTV-MLESSGGL 250 (284)
T ss_dssp EEEEESSHHHHHHHGG--GCCSEEEEETCCH-HHHHHHHHHHHHH----------------------CTTC-EEEEESSC
T ss_pred EEEEeCCHHHHHHHHH--cCCCEEEECCCCH-HHHHHHHHHhhcc----------------------CCCe-EEEEECCC
Confidence 4556778899988874 3589999997332 1112233333321 1233 56789999
Q ss_pred CHHhHHHHHHcCCCeEE
Q 003018 815 IQATYEECLRSGMDGYV 831 (856)
Q Consensus 815 ~~~~~~~~~~aG~d~yl 831 (856)
..+...+..+.|+|.+.
T Consensus 251 t~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 251 SLQTAATYAETGVDYLA 267 (284)
T ss_dssp CTTTHHHHHHTTCSEEE
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998765
No 369
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=20.53 E-value=2e+02 Score=27.75 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=41.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCE--EE-EEcCHHHHHHHhCC---CCCccEEEEeCCC
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP---PHQFDACFMDIQM 764 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~--v~-~a~~g~eA~~~l~~---~~~~DlilmDi~M 764 (856)
+.+|.-||=++.....++..+++.|.. |. ...+..+.+..+.. ...||+||+|...
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~ 144 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWK 144 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCG
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCc
Confidence 458999999999999999999988753 44 45566665554421 1579999999744
No 370
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=20.45 E-value=2.4e+02 Score=27.63 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=51.1
Q ss_pred HHHHhhcCCEEEEEc---CHHHHHHHhCCCC--CccEEEEeCCCCCCC-------HHHHHHHHHhhcccccccccccccc
Q 003018 726 AAGLKRYGAAVVCVE---RGKKATELLMPPH--QFDACFMDIQMPEMD-------GFEATKIIREMEHNFNNRIRRGEVS 793 (856)
Q Consensus 726 ~~~L~~~g~~v~~a~---~g~eA~~~l~~~~--~~DlilmDi~MP~md-------G~e~~~~IR~~~~~~~~~~~~g~~~ 793 (856)
...+++.|..+-..- +..++++.+. .. ..|.|+++--.|+-. +++-++++|++-
T Consensus 106 ~~~i~~~g~~igv~~~p~t~~e~~~~~~-~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~------------- 171 (228)
T 1h1y_A 106 IQSIKAKGMRPGVSLRPGTPVEEVFPLV-EAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY------------- 171 (228)
T ss_dssp HHHHHHTTCEEEEEECTTSCGGGGHHHH-HSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC-------------
T ss_pred HHHHHHcCCCEEEEEeCCCCHHHHHHHH-hcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhc-------------
Confidence 344455676655433 3334444442 21 478998877667533 355566666531
Q ss_pred hhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 794 IEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 794 ~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
.++||+ +.+....+...++.++|+|.++.
T Consensus 172 ---------~~~pi~-v~GGI~~~ni~~~~~aGaD~vvv 200 (228)
T 1h1y_A 172 ---------PSLDIE-VDGGLGPSTIDVAASAGANCIVA 200 (228)
T ss_dssp ---------TTSEEE-EESSCSTTTHHHHHHHTCCEEEE
T ss_pred ---------CCCCEE-EECCcCHHHHHHHHHcCCCEEEE
Confidence 146654 56667778888999999999865
No 371
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=20.43 E-value=2.1e+02 Score=29.13 Aligned_cols=67 Identities=19% Similarity=0.099 Sum_probs=45.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhhc--C---CEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCC-----CHHHHHHHHHh
Q 003018 710 RKILIVDDNNVNLKVAAAGLKRY--G---AAV-VCVERGKKATELLMPPHQFDACFMDIQMPEM-----DGFEATKIIRE 778 (856)
Q Consensus 710 ~~ILvVdDn~~n~~~l~~~L~~~--g---~~v-~~a~~g~eA~~~l~~~~~~DlilmDi~MP~m-----dG~e~~~~IR~ 778 (856)
.+|..||=++...++++..+... + -.+ ....|+.+.+... ...||+|++|.--|.. ..-++.+.+++
T Consensus 100 ~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~ 177 (275)
T 1iy9_A 100 KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS--ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAK 177 (275)
T ss_dssp SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC--CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC--CCCeeEEEECCCCCCCcchhhhHHHHHHHHHH
Confidence 58999999999999998877531 1 123 3456777666532 4679999999865532 12456666665
No 372
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=20.32 E-value=1.1e+02 Score=29.80 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=25.1
Q ss_pred CCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 804 HVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 804 ~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
.+|||+.-+-.+.++..+++++|+|.++.
T Consensus 175 ~ipvia~GGI~~~~~~~~~~~~Gad~v~v 203 (223)
T 1y0e_A 175 DAKVIAEGNVITPDMYKRVMDLGVHCSVV 203 (223)
T ss_dssp CSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 58999877776899999999999998865
No 373
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=20.24 E-value=4.3e+02 Score=23.02 Aligned_cols=93 Identities=17% Similarity=0.202 Sum_probs=52.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCCEEEEEcCH-HHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG-KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 787 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g-~eA~~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 787 (856)
|.+|.++|.++.....+ ...|+.+...+-. .+.++.+ .-..+|+|+.-.. ....-..++..+|+.
T Consensus 29 g~~V~~id~~~~~~~~~----~~~~~~~~~gd~~~~~~l~~~-~~~~~d~vi~~~~-~~~~n~~~~~~a~~~-------- 94 (141)
T 3llv_A 29 GKKVLAVDKSKEKIELL----EDEGFDAVIADPTDESFYRSL-DLEGVSAVLITGS-DDEFNLKILKALRSV-------- 94 (141)
T ss_dssp TCCEEEEESCHHHHHHH----HHTTCEEEECCTTCHHHHHHS-CCTTCSEEEECCS-CHHHHHHHHHHHHHH--------
T ss_pred CCeEEEEECCHHHHHHH----HHCCCcEEECCCCCHHHHHhC-CcccCCEEEEecC-CHHHHHHHHHHHHHh--------
Confidence 45799999998654433 3457776654432 3344444 2346899987543 111123445555543
Q ss_pred cccccchhhhccCCCCCCcEEEEecCCCHHhHHHHHHcCCCeEEe
Q 003018 788 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 832 (856)
Q Consensus 788 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 832 (856)
. ...||+...+ ........++|+|..+.
T Consensus 95 --------------~-~~~iia~~~~--~~~~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 95 --------------S-DVYAIVRVSS--PKKKEEFEEAGANLVVL 122 (141)
T ss_dssp --------------C-CCCEEEEESC--GGGHHHHHHTTCSEEEE
T ss_pred --------------C-CceEEEEEcC--hhHHHHHHHcCCCEEEC
Confidence 1 3457766644 34555677899975554
No 374
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=20.09 E-value=3.2e+02 Score=26.15 Aligned_cols=68 Identities=7% Similarity=0.090 Sum_probs=46.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhCCC---CCccEEEEeCCCCCCCHHHHHHHHHh
Q 003018 709 GRKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMPP---HQFDACFMDIQMPEMDGFEATKIIRE 778 (856)
Q Consensus 709 ~~~ILvVdDn~~n~~~l~~~L~~~g~--~v~-~a~~g~eA~~~l~~~---~~~DlilmDi~MP~mdG~e~~~~IR~ 778 (856)
+.+|..+|-++.....++..++..|. .+. ...+..+.+..+... ..||+|++|.. ..+-.++.+.+..
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~~~ 167 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERCLQ 167 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHHHH
Confidence 45899999999999999999988775 344 345666655444211 57999999864 3333455566554
Done!