Query 003020
Match_columns 856
No_of_seqs 768 out of 3893
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 15:26:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.9E-78 4.1E-83 717.4 59.3 663 96-808 53-726 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 4.3E-74 9.4E-79 680.2 68.7 615 190-846 47-668 (857)
3 PLN03218 maturation of RBCL 1; 100.0 5.5E-64 1.2E-68 579.3 70.9 524 225-809 366-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 9.5E-64 2E-68 577.3 68.7 534 168-774 380-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 5.4E-60 1.2E-64 546.5 51.1 514 191-809 84-611 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.2E-59 2.6E-64 543.6 53.9 476 263-807 86-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-44 4.7E-49 438.7 75.3 722 49-822 155-885 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.9E-44 1.5E-48 434.3 79.5 717 53-822 126-851 (899)
9 PRK11447 cellulose synthase su 100.0 5.2E-30 1.1E-34 311.1 76.9 620 166-822 36-725 (1157)
10 PRK11447 cellulose synthase su 100.0 1.6E-29 3.5E-34 306.9 75.8 622 167-806 71-745 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 8.8E-26 1.9E-30 260.7 71.6 598 166-821 52-724 (987)
12 PRK09782 bacteriophage N4 rece 100.0 2.9E-25 6.3E-30 256.4 65.5 661 98-822 48-758 (987)
13 KOG2002 TPR-containing nuclear 100.0 5.2E-25 1.1E-29 236.0 55.2 682 96-822 43-764 (1018)
14 KOG1915 Cell cycle control pro 100.0 1.6E-26 3.4E-31 227.4 32.9 434 64-572 85-548 (677)
15 KOG4626 O-linked N-acetylgluco 100.0 9.3E-26 2E-30 228.9 39.4 455 324-791 51-508 (966)
16 KOG2002 TPR-containing nuclear 100.0 7E-23 1.5E-27 219.8 61.6 625 167-822 50-730 (1018)
17 KOG4626 O-linked N-acetylgluco 100.0 9.3E-26 2E-30 228.9 36.5 447 359-819 51-501 (966)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.8E-20 3.9E-25 214.1 53.7 435 322-802 128-571 (615)
19 TIGR00990 3a0801s09 mitochondr 99.9 6E-20 1.3E-24 209.9 56.5 427 296-770 137-574 (615)
20 PRK10049 pgaA outer membrane p 99.9 2.3E-19 4.9E-24 208.6 52.3 425 355-818 14-470 (765)
21 PRK11788 tetratricopeptide rep 99.9 1.5E-21 3.2E-26 212.1 31.4 329 500-839 40-378 (389)
22 PRK15174 Vi polysaccharide exp 99.9 2.1E-19 4.5E-24 204.3 47.9 335 430-770 46-384 (656)
23 PRK15174 Vi polysaccharide exp 99.9 1.1E-19 2.4E-24 206.4 45.6 335 462-802 43-381 (656)
24 PRK10049 pgaA outer membrane p 99.9 5.4E-19 1.2E-23 205.5 49.4 425 316-773 10-461 (765)
25 KOG0495 HAT repeat protein [RN 99.9 1.1E-15 2.4E-20 157.5 62.7 618 173-848 266-898 (913)
26 KOG2076 RNA polymerase III tra 99.9 2.5E-16 5.5E-21 169.0 59.2 609 167-802 148-849 (895)
27 PRK14574 hmsH outer membrane p 99.9 4.8E-17 1.1E-21 184.7 56.1 461 323-815 37-524 (822)
28 PRK11788 tetratricopeptide rep 99.9 3.3E-19 7.2E-24 193.7 36.2 297 473-774 47-354 (389)
29 KOG0495 HAT repeat protein [RN 99.9 2.1E-16 4.6E-21 162.6 53.5 514 210-769 362-882 (913)
30 KOG2076 RNA polymerase III tra 99.8 6.7E-15 1.4E-19 158.2 58.1 629 143-798 150-891 (895)
31 PRK14574 hmsH outer membrane p 99.8 1.4E-15 3.1E-20 172.8 55.0 213 534-770 297-516 (822)
32 KOG2003 TPR repeat-containing 99.8 4.4E-17 9.5E-22 160.2 34.7 486 228-753 200-709 (840)
33 KOG1915 Cell cycle control pro 99.8 9E-14 1.9E-18 138.3 53.8 448 191-697 70-535 (677)
34 KOG2003 TPR repeat-containing 99.8 4.6E-15 1E-19 146.2 36.9 482 322-822 202-708 (840)
35 KOG4422 Uncharacterized conser 99.7 6.5E-13 1.4E-17 130.7 42.3 368 320-737 206-594 (625)
36 KOG0547 Translocase of outer m 99.7 2.1E-13 4.6E-18 136.5 37.3 223 574-801 336-565 (606)
37 KOG2047 mRNA splicing factor [ 99.7 5.5E-11 1.2E-15 123.3 55.6 546 194-801 102-718 (835)
38 KOG4422 Uncharacterized conser 99.7 2.8E-12 6E-17 126.3 43.9 414 320-803 115-591 (625)
39 TIGR00540 hemY_coli hemY prote 99.7 3E-13 6.5E-18 146.1 38.2 296 504-801 93-398 (409)
40 KOG0547 Translocase of outer m 99.7 2.8E-13 6.1E-18 135.6 34.2 223 436-662 336-565 (606)
41 KOG1126 DNA-binding cell divis 99.7 2.2E-14 4.7E-19 149.8 25.8 285 510-802 334-620 (638)
42 PRK10747 putative protoheme IX 99.7 8.2E-13 1.8E-17 141.8 38.2 286 506-801 95-389 (398)
43 KOG1173 Anaphase-promoting com 99.7 4.8E-12 1E-16 129.6 40.2 472 319-820 14-534 (611)
44 KOG1155 Anaphase-promoting com 99.7 1.6E-11 3.6E-16 122.5 42.5 364 317-695 160-533 (559)
45 PF13429 TPR_15: Tetratricopep 99.6 1E-15 2.2E-20 157.1 12.8 261 534-801 13-276 (280)
46 KOG1126 DNA-binding cell divis 99.6 5.4E-14 1.2E-18 146.9 25.4 291 441-772 334-625 (638)
47 KOG1155 Anaphase-promoting com 99.6 1.8E-11 3.9E-16 122.2 40.7 377 422-816 160-548 (559)
48 KOG1173 Anaphase-promoting com 99.6 1.8E-11 3.8E-16 125.5 41.6 283 423-711 241-529 (611)
49 KOG2047 mRNA splicing factor [ 99.6 8.3E-09 1.8E-13 107.5 59.7 600 176-827 44-714 (835)
50 KOG4162 Predicted calmodulin-b 99.6 6.7E-11 1.5E-15 125.8 45.6 128 672-801 653-782 (799)
51 KOG4162 Predicted calmodulin-b 99.6 3E-10 6.5E-15 120.9 49.6 408 352-770 319-786 (799)
52 TIGR00540 hemY_coli hemY prote 99.6 1.9E-12 4.2E-17 139.8 34.3 278 540-822 95-384 (409)
53 PF13429 TPR_15: Tetratricopep 99.6 4.2E-15 9E-20 152.5 12.5 261 500-766 13-276 (280)
54 PRK10747 putative protoheme IX 99.6 9.1E-12 2E-16 133.7 34.3 122 404-561 97-219 (398)
55 KOG3785 Uncharacterized conser 99.6 4.1E-11 8.8E-16 115.3 34.3 222 615-848 270-507 (557)
56 COG3071 HemY Uncharacterized e 99.6 3.3E-11 7.2E-16 118.8 34.2 293 507-807 96-395 (400)
57 KOG1127 TPR repeat-containing 99.6 1.4E-09 3E-14 118.5 49.3 630 147-815 473-1187(1238)
58 COG2956 Predicted N-acetylgluc 99.6 5.4E-12 1.2E-16 120.2 27.1 320 507-840 47-379 (389)
59 KOG1156 N-terminal acetyltrans 99.5 9E-10 2E-14 115.0 44.9 433 322-764 42-508 (700)
60 KOG3785 Uncharacterized conser 99.5 3.2E-10 7E-15 109.2 37.6 439 171-697 35-489 (557)
61 KOG1156 N-terminal acetyltrans 99.5 4.7E-09 1E-13 109.8 47.7 468 232-733 11-511 (700)
62 KOG4318 Bicoid mRNA stability 99.5 1E-10 2.2E-15 125.8 36.3 588 183-820 15-642 (1088)
63 COG2956 Predicted N-acetylgluc 99.5 1E-10 2.3E-15 111.6 31.0 274 404-714 48-325 (389)
64 KOG4318 Bicoid mRNA stability 99.5 7.5E-10 1.6E-14 119.2 40.9 247 568-824 463-755 (1088)
65 KOG1127 TPR repeat-containing 99.5 1.2E-09 2.7E-14 118.9 43.0 561 209-801 473-1103(1238)
66 TIGR02521 type_IV_pilW type IV 99.5 4.9E-11 1.1E-15 119.4 27.9 200 599-801 31-231 (234)
67 COG3071 HemY Uncharacterized e 99.5 5.6E-10 1.2E-14 110.3 33.0 286 404-732 97-389 (400)
68 KOG0548 Molecular co-chaperone 99.4 1.1E-09 2.3E-14 112.4 35.2 421 398-838 9-495 (539)
69 KOG1174 Anaphase-promoting com 99.4 1.4E-08 3.1E-13 100.2 40.7 299 437-741 207-508 (564)
70 KOG1129 TPR repeat-containing 99.4 1.5E-11 3.3E-16 117.0 19.6 236 565-808 224-462 (478)
71 KOG3616 Selective LIM binding 99.4 2.1E-08 4.6E-13 105.5 43.7 254 98-416 619-875 (1636)
72 KOG0985 Vesicle coat protein c 99.4 9.1E-07 2E-11 97.0 56.1 268 550-848 968-1262(1666)
73 PRK12370 invasion protein regu 99.4 4.4E-10 9.5E-15 126.3 32.6 182 580-766 320-501 (553)
74 KOG1129 TPR repeat-containing 99.4 2.4E-11 5.3E-16 115.6 18.6 234 532-770 226-461 (478)
75 KOG2376 Signal recognition par 99.4 4.3E-08 9.4E-13 101.6 42.6 148 614-764 356-517 (652)
76 PRK12370 invasion protein regu 99.4 2.4E-10 5.2E-15 128.4 28.1 202 612-819 317-520 (553)
77 KOG0548 Molecular co-chaperone 99.4 4.3E-09 9.4E-14 108.0 33.9 460 272-798 10-485 (539)
78 KOG2376 Signal recognition par 99.4 2.4E-08 5.2E-13 103.5 39.1 449 328-799 19-517 (652)
79 KOG1840 Kinesin light chain [C 99.4 4.7E-10 1E-14 119.4 27.6 251 566-816 201-499 (508)
80 KOG0985 Vesicle coat protein c 99.4 7.6E-07 1.7E-11 97.5 51.6 493 161-691 609-1242(1666)
81 KOG3616 Selective LIM binding 99.3 7.4E-09 1.6E-13 108.9 35.1 194 328-553 739-932 (1636)
82 KOG0624 dsRNA-activated protei 99.3 1.1E-08 2.3E-13 98.6 33.3 299 467-769 44-372 (504)
83 KOG3617 WD40 and TPR repeat-co 99.3 1.7E-07 3.6E-12 100.3 45.0 530 170-802 740-1359(1416)
84 TIGR02521 type_IV_pilW type IV 99.3 9.4E-10 2E-14 110.1 27.8 200 565-767 32-232 (234)
85 PF12569 NARP1: NMDA receptor- 99.3 6.1E-08 1.3E-12 105.0 42.0 259 272-560 12-293 (517)
86 KOG1840 Kinesin light chain [C 99.3 6.4E-10 1.4E-14 118.4 26.4 205 532-765 244-477 (508)
87 PF12569 NARP1: NMDA receptor- 99.3 4.2E-08 9.1E-13 106.2 40.7 291 329-627 12-333 (517)
88 KOG1174 Anaphase-promoting com 99.3 8E-08 1.7E-12 95.1 38.4 186 611-801 312-499 (564)
89 PRK11189 lipoprotein NlpI; Pro 99.3 1.8E-09 3.8E-14 110.9 27.9 226 578-813 40-275 (296)
90 COG3063 PilF Tfp pilus assembl 99.2 5.4E-09 1.2E-13 95.7 24.0 208 195-429 36-243 (250)
91 COG3063 PilF Tfp pilus assembl 99.2 7.5E-09 1.6E-13 94.8 24.8 206 602-812 38-244 (250)
92 KOG0624 dsRNA-activated protei 99.2 1.3E-07 2.7E-12 91.4 33.0 352 432-809 44-427 (504)
93 KOG3617 WD40 and TPR repeat-co 99.2 2.6E-06 5.7E-11 91.5 43.7 384 331-776 922-1368(1416)
94 PRK11189 lipoprotein NlpI; Pro 99.2 1.7E-08 3.8E-13 103.6 27.1 118 441-558 41-161 (296)
95 cd05804 StaR_like StaR_like; a 99.1 1.7E-07 3.7E-12 100.4 34.6 304 495-802 6-336 (355)
96 cd05804 StaR_like StaR_like; a 99.1 4.6E-07 9.9E-12 97.1 35.5 261 503-767 51-336 (355)
97 PF13041 PPR_2: PPR repeat fam 99.1 2.9E-10 6.2E-15 81.0 6.8 50 319-368 1-50 (50)
98 KOG4340 Uncharacterized conser 99.1 4.5E-08 9.8E-13 92.5 22.7 288 467-762 16-334 (459)
99 KOG4340 Uncharacterized conser 99.1 2.6E-07 5.7E-12 87.5 27.1 416 324-801 13-442 (459)
100 KOG1125 TPR repeat-containing 99.1 3.1E-08 6.8E-13 102.7 22.3 245 574-822 295-556 (579)
101 PF13041 PPR_2: PPR repeat fam 99.0 4.8E-10 1E-14 79.9 6.3 49 389-437 1-49 (50)
102 KOG1125 TPR repeat-containing 99.0 2.6E-08 5.6E-13 103.3 21.1 232 468-731 292-525 (579)
103 PF04733 Coatomer_E: Coatomer 99.0 8.1E-09 1.8E-13 104.1 16.3 252 540-808 12-269 (290)
104 KOG1914 mRNA cleavage and poly 99.0 5.3E-05 1.1E-09 78.4 41.8 149 545-695 347-498 (656)
105 KOG2053 Mitochondrial inherita 99.0 0.00015 3.2E-09 80.0 45.9 219 171-421 22-256 (932)
106 PRK04841 transcriptional regul 98.9 4.4E-06 9.5E-11 101.7 39.3 269 535-803 458-761 (903)
107 PLN02789 farnesyltranstransfer 98.9 1E-06 2.2E-11 90.2 27.9 218 577-799 50-299 (320)
108 PRK10370 formate-dependent nit 98.9 2E-07 4.4E-12 88.8 20.8 127 682-811 52-181 (198)
109 KOG1128 Uncharacterized conser 98.9 1.4E-07 3.1E-12 100.4 20.5 221 561-801 395-615 (777)
110 PLN02789 farnesyltranstransfer 98.9 8.9E-07 1.9E-11 90.6 25.6 207 608-820 46-267 (320)
111 PRK15359 type III secretion sy 98.9 1E-07 2.2E-12 85.8 16.4 114 690-810 14-127 (144)
112 PRK04841 transcriptional regul 98.9 4.9E-06 1.1E-10 101.3 35.8 335 436-770 384-763 (903)
113 PF04733 Coatomer_E: Coatomer 98.9 9.9E-08 2.2E-12 96.3 17.2 250 507-770 13-268 (290)
114 PRK15179 Vi polysaccharide bio 98.9 1E-06 2.2E-11 99.4 27.0 135 665-802 82-217 (694)
115 TIGR03302 OM_YfiO outer membra 98.8 5.1E-07 1.1E-11 90.1 22.0 186 597-802 31-232 (235)
116 COG5010 TadD Flp pilus assembl 98.8 7E-07 1.5E-11 84.1 20.6 164 633-800 66-229 (257)
117 PRK15359 type III secretion sy 98.8 3.7E-07 8.1E-12 82.2 17.7 125 655-785 14-138 (144)
118 KOG1914 mRNA cleavage and poly 98.8 0.00041 8.9E-09 72.1 43.4 186 615-801 309-500 (656)
119 KOG1128 Uncharacterized conser 98.8 7.6E-06 1.7E-10 87.7 28.2 222 457-697 394-615 (777)
120 KOG3060 Uncharacterized conser 98.7 1.4E-05 3E-10 74.8 25.5 187 613-802 26-220 (289)
121 TIGR02552 LcrH_SycD type III s 98.7 4.9E-07 1.1E-11 81.2 15.6 120 691-814 5-124 (135)
122 PRK10370 formate-dependent nit 98.7 2.4E-06 5.3E-11 81.4 20.6 151 606-770 23-176 (198)
123 COG5010 TadD Flp pilus assembl 98.7 5.1E-06 1.1E-10 78.5 21.2 157 668-828 66-223 (257)
124 PRK14720 transcript cleavage f 98.7 7.5E-06 1.6E-10 93.1 26.7 149 493-662 29-177 (906)
125 KOG2053 Mitochondrial inherita 98.7 0.0014 3.1E-08 72.5 47.5 94 707-801 439-535 (932)
126 TIGR03302 OM_YfiO outer membra 98.7 2.7E-06 5.9E-11 84.9 20.5 188 562-768 31-233 (235)
127 KOG1070 rRNA processing protei 98.6 1.7E-05 3.7E-10 90.7 27.4 217 482-702 1445-1667(1710)
128 KOG1070 rRNA processing protei 98.6 2E-05 4.2E-10 90.2 27.8 242 516-791 1445-1689(1710)
129 PRK15179 Vi polysaccharide bio 98.6 1.8E-05 4E-10 89.4 27.3 133 633-767 85-217 (694)
130 KOG3060 Uncharacterized conser 98.6 5.4E-05 1.2E-09 70.9 24.3 173 602-778 55-230 (289)
131 COG4783 Putative Zn-dependent 98.6 2.7E-05 6E-10 80.0 23.8 148 643-812 315-463 (484)
132 KOG3081 Vesicle coat complex C 98.5 2.9E-05 6.3E-10 73.2 21.8 244 542-801 21-270 (299)
133 PF07079 DUF1347: Protein of u 98.5 0.0019 4.2E-08 65.9 40.8 263 165-454 13-326 (549)
134 PRK14720 transcript cleavage f 98.5 4.7E-05 1E-09 86.9 26.8 236 463-749 33-268 (906)
135 KOG3081 Vesicle coat complex C 98.5 0.00016 3.6E-09 68.3 24.5 155 606-770 115-274 (299)
136 TIGR02552 LcrH_SycD type III s 98.4 9E-06 1.9E-10 73.0 15.8 113 656-770 5-117 (135)
137 PRK15363 pathogenicity island 98.4 5.3E-06 1.2E-10 73.0 13.4 96 706-802 37-132 (157)
138 KOG0553 TPR repeat-containing 98.4 2.4E-06 5.2E-11 82.2 11.8 112 676-789 88-199 (304)
139 COG4783 Putative Zn-dependent 98.4 5.9E-05 1.3E-09 77.7 22.0 186 632-822 272-458 (484)
140 KOG0550 Molecular chaperone (D 98.4 4.2E-05 9.2E-10 76.6 19.9 90 679-768 259-351 (486)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.4E-05 3E-10 83.5 16.3 125 671-800 171-295 (395)
142 PF12854 PPR_1: PPR repeat 98.3 7.1E-07 1.5E-11 56.8 3.7 31 387-417 3-33 (34)
143 PF12854 PPR_1: PPR repeat 98.3 9.4E-07 2E-11 56.2 3.7 32 224-255 2-33 (34)
144 KOG0553 TPR repeat-containing 98.2 1.6E-05 3.4E-10 76.7 12.7 131 641-774 88-222 (304)
145 KOG0550 Molecular chaperone (D 98.2 0.00024 5.1E-09 71.4 21.1 174 645-822 180-371 (486)
146 PLN03088 SGT1, suppressor of 98.2 2.6E-05 5.7E-10 82.1 15.7 97 711-810 9-105 (356)
147 PF09976 TPR_21: Tetratricopep 98.2 6.4E-05 1.4E-09 68.1 15.8 126 671-799 14-144 (145)
148 cd00189 TPR Tetratricopeptide 98.2 2.5E-05 5.3E-10 64.9 12.1 94 707-801 3-96 (100)
149 TIGR02795 tol_pal_ybgF tol-pal 98.1 8.8E-05 1.9E-09 64.7 14.5 96 707-802 5-105 (119)
150 PF12895 Apc3: Anaphase-promot 98.1 5.1E-06 1.1E-10 67.1 5.9 81 717-799 2-84 (84)
151 PF09976 TPR_21: Tetratricopep 98.1 0.00017 3.8E-09 65.2 16.3 126 636-764 14-144 (145)
152 COG4235 Cytochrome c biogenesi 98.1 0.00013 2.8E-09 71.1 15.8 100 702-802 154-256 (287)
153 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.0002 4.3E-09 62.5 14.6 105 670-775 3-112 (119)
154 PLN03088 SGT1, suppressor of 98.0 0.00019 4.1E-09 75.7 16.3 105 676-782 9-113 (356)
155 PRK15363 pathogenicity island 98.0 0.00022 4.7E-09 63.0 13.4 98 670-768 36-133 (157)
156 PF13414 TPR_11: TPR repeat; P 98.0 3.1E-05 6.8E-10 59.7 7.2 64 737-801 2-66 (69)
157 PRK02603 photosystem I assembl 98.0 0.00035 7.5E-09 65.5 15.6 83 671-753 37-121 (172)
158 cd00189 TPR Tetratricopeptide 98.0 0.00015 3.3E-09 60.0 12.1 97 672-769 3-99 (100)
159 CHL00033 ycf3 photosystem I as 97.9 0.00017 3.8E-09 67.3 13.5 97 704-801 35-141 (168)
160 PRK02603 photosystem I assembl 97.9 0.00036 7.7E-09 65.4 15.4 89 636-725 37-127 (172)
161 KOG1130 Predicted G-alpha GTPa 97.9 0.00033 7.1E-09 70.1 15.4 155 636-790 197-372 (639)
162 PF13432 TPR_16: Tetratricopep 97.9 4.4E-05 9.6E-10 58.0 7.5 57 744-801 3-59 (65)
163 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.0002 4.4E-09 74.9 14.3 116 438-557 181-296 (395)
164 CHL00033 ycf3 photosystem I as 97.9 0.00024 5.1E-09 66.4 13.4 95 669-763 35-138 (168)
165 PF13432 TPR_16: Tetratricopep 97.9 5.8E-05 1.3E-09 57.3 7.5 61 710-770 3-63 (65)
166 KOG2796 Uncharacterized conser 97.9 0.0015 3.1E-08 61.7 17.2 158 679-839 187-351 (366)
167 COG4700 Uncharacterized protei 97.9 0.0034 7.4E-08 56.1 18.5 134 666-801 86-221 (251)
168 PRK10153 DNA-binding transcrip 97.9 0.0012 2.5E-08 72.7 19.8 101 721-825 401-503 (517)
169 PF13414 TPR_11: TPR repeat; P 97.8 6.7E-05 1.4E-09 57.8 7.4 67 703-769 2-69 (69)
170 TIGR00756 PPR pentatricopeptid 97.8 3.1E-05 6.6E-10 50.2 4.3 34 323-356 2-35 (35)
171 PF12895 Apc3: Anaphase-promot 97.8 4.9E-05 1.1E-09 61.3 5.9 81 682-763 2-83 (84)
172 PF14559 TPR_19: Tetratricopep 97.8 0.00011 2.3E-09 56.5 7.4 63 749-814 2-64 (68)
173 COG3898 Uncharacterized membra 97.8 0.06 1.3E-06 54.3 29.8 253 540-806 131-396 (531)
174 KOG2041 WD40 repeat protein [G 97.7 0.097 2.1E-06 56.6 30.1 208 190-452 688-904 (1189)
175 KOG2041 WD40 repeat protein [G 97.7 0.065 1.4E-06 57.9 28.8 205 388-625 689-904 (1189)
176 PF14938 SNAP: Soluble NSF att 97.7 0.003 6.5E-08 64.5 19.1 186 146-385 29-225 (282)
177 COG4235 Cytochrome c biogenesi 97.7 0.0018 3.9E-08 63.4 15.9 115 656-772 144-261 (287)
178 PF13812 PPR_3: Pentatricopept 97.7 8E-05 1.7E-09 47.8 4.3 33 322-354 2-34 (34)
179 PRK10153 DNA-binding transcrip 97.6 0.0034 7.4E-08 69.2 19.4 68 702-770 418-485 (517)
180 PRK15331 chaperone protein Sic 97.6 0.0011 2.5E-08 58.8 12.6 89 712-801 45-133 (165)
181 PF14559 TPR_19: Tetratricopep 97.6 0.00015 3.3E-09 55.6 6.4 63 715-778 2-64 (68)
182 PRK10866 outer membrane biogen 97.6 0.015 3.3E-07 57.4 21.6 57 743-799 180-238 (243)
183 PRK10803 tol-pal system protei 97.6 0.0017 3.6E-08 64.7 14.8 102 706-809 145-251 (263)
184 TIGR00756 PPR pentatricopeptid 97.6 8.1E-05 1.8E-09 48.1 3.8 33 393-425 2-34 (35)
185 PF12688 TPR_5: Tetratrico pep 97.6 0.0043 9.4E-08 53.0 14.7 53 714-766 11-66 (120)
186 PF13371 TPR_9: Tetratricopept 97.5 0.00048 1E-08 53.7 8.1 62 746-810 3-64 (73)
187 KOG2796 Uncharacterized conser 97.5 0.097 2.1E-06 49.9 25.3 228 529-771 69-319 (366)
188 PF13812 PPR_3: Pentatricopept 97.5 0.00017 3.7E-09 46.2 4.1 32 393-424 3-34 (34)
189 PF14938 SNAP: Soluble NSF att 97.5 0.015 3.2E-07 59.4 20.3 95 707-801 117-224 (282)
190 KOG1130 Predicted G-alpha GTPa 97.5 0.003 6.5E-08 63.5 14.0 284 399-697 25-343 (639)
191 PRK10866 outer membrane biogen 97.4 0.043 9.3E-07 54.3 22.3 80 193-273 31-113 (243)
192 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.21 4.5E-06 51.5 34.6 133 599-735 397-533 (660)
193 PF13371 TPR_9: Tetratricopept 97.4 0.0011 2.4E-08 51.6 8.5 60 711-770 2-61 (73)
194 PF05843 Suf: Suppressor of fo 97.4 0.0039 8.4E-08 63.4 14.5 130 428-558 3-136 (280)
195 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.23 4.9E-06 51.2 34.4 135 633-770 396-534 (660)
196 COG3898 Uncharacterized membra 97.4 0.21 4.6E-06 50.6 30.1 286 438-767 96-392 (531)
197 PF10037 MRP-S27: Mitochondria 97.4 0.0032 7E-08 66.3 13.7 118 562-679 64-183 (429)
198 PF01535 PPR: PPR repeat; Int 97.3 0.00025 5.3E-09 44.3 3.4 31 322-352 1-31 (31)
199 KOG0543 FKBP-type peptidyl-pro 97.3 0.0043 9.2E-08 63.1 13.8 96 705-801 258-354 (397)
200 COG4700 Uncharacterized protei 97.3 0.072 1.6E-06 47.9 19.6 133 631-766 86-221 (251)
201 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0047 1E-07 64.4 14.3 65 703-767 74-141 (453)
202 COG0457 NrfG FOG: TPR repeat [ 97.3 0.2 4.3E-06 49.6 30.8 222 579-802 38-265 (291)
203 PF10037 MRP-S27: Mitochondria 97.3 0.0016 3.5E-08 68.5 11.2 119 319-437 64-184 (429)
204 PF05843 Suf: Suppressor of fo 97.3 0.0031 6.7E-08 64.1 13.0 130 462-592 2-135 (280)
205 KOG1538 Uncharacterized conser 97.3 0.054 1.2E-06 58.0 21.8 101 425-558 746-846 (1081)
206 PF03704 BTAD: Bacterial trans 97.2 0.0089 1.9E-07 54.2 13.6 72 740-812 64-140 (146)
207 PRK11906 transcriptional regul 97.2 0.016 3.4E-07 60.8 16.4 101 719-822 319-422 (458)
208 PF12688 TPR_5: Tetratrico pep 97.2 0.025 5.3E-07 48.5 14.8 90 606-696 8-102 (120)
209 KOG1538 Uncharacterized conser 97.2 0.067 1.4E-06 57.3 20.6 100 494-627 746-845 (1081)
210 PF08579 RPM2: Mitochondrial r 97.2 0.0052 1.1E-07 50.3 9.7 78 323-400 27-113 (120)
211 PRK10803 tol-pal system protei 97.1 0.0098 2.1E-07 59.2 13.9 101 670-770 144-249 (263)
212 PF13424 TPR_12: Tetratricopep 97.1 0.0011 2.4E-08 52.4 6.0 64 738-801 5-74 (78)
213 PF01535 PPR: PPR repeat; Int 97.1 0.00072 1.6E-08 42.1 3.6 29 231-259 2-30 (31)
214 PF08579 RPM2: Mitochondrial r 97.1 0.011 2.4E-07 48.5 11.0 80 742-821 29-117 (120)
215 KOG1258 mRNA processing protei 97.0 0.66 1.4E-05 50.2 35.3 123 460-584 296-420 (577)
216 PF13525 YfiO: Outer membrane 97.0 0.054 1.2E-06 52.1 17.4 54 644-697 15-70 (203)
217 PF13525 YfiO: Outer membrane 97.0 0.13 2.8E-06 49.5 19.7 45 711-755 148-195 (203)
218 PF07079 DUF1347: Protein of u 96.9 0.67 1.4E-05 48.2 45.9 149 203-368 15-179 (549)
219 PF13512 TPR_18: Tetratricopep 96.9 0.036 7.9E-07 48.3 13.5 93 710-802 16-128 (142)
220 KOG1258 mRNA processing protei 96.9 0.91 2E-05 49.2 36.7 207 614-822 270-489 (577)
221 PRK15331 chaperone protein Sic 96.9 0.036 7.7E-07 49.6 13.4 92 467-558 43-134 (165)
222 PF06239 ECSIT: Evolutionarily 96.8 0.021 4.6E-07 53.2 12.1 50 354-403 45-99 (228)
223 PF13281 DUF4071: Domain of un 96.8 0.21 4.5E-06 51.8 20.3 162 604-767 146-334 (374)
224 KOG4555 TPR repeat-containing 96.8 0.026 5.6E-07 47.4 10.7 90 713-803 52-145 (175)
225 PF13281 DUF4071: Domain of un 96.7 0.38 8.2E-06 50.0 21.3 169 638-809 145-339 (374)
226 COG0457 NrfG FOG: TPR repeat [ 96.7 0.74 1.6E-05 45.3 33.2 228 542-770 36-268 (291)
227 PF13424 TPR_12: Tetratricopep 96.6 0.0047 1E-07 48.8 5.8 61 706-766 7-74 (78)
228 PF06239 ECSIT: Evolutionarily 96.6 0.021 4.5E-07 53.2 10.4 89 388-476 44-153 (228)
229 KOG2610 Uncharacterized conser 96.6 0.045 9.8E-07 53.9 13.0 151 647-799 116-273 (491)
230 PRK11906 transcriptional regul 96.6 0.17 3.6E-06 53.4 18.0 115 684-800 319-434 (458)
231 PF13428 TPR_14: Tetratricopep 96.6 0.0056 1.2E-07 41.8 5.1 40 740-780 3-42 (44)
232 PF03704 BTAD: Bacterial trans 96.6 0.025 5.5E-07 51.2 10.8 72 706-777 64-140 (146)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.031 6.8E-07 58.5 12.4 66 666-733 72-141 (453)
234 KOG0543 FKBP-type peptidyl-pro 96.5 0.028 6.1E-07 57.4 11.5 122 674-819 213-335 (397)
235 PF04840 Vps16_C: Vps16, C-ter 96.4 1.4 3E-05 45.4 30.1 101 398-517 184-284 (319)
236 KOG1941 Acetylcholine receptor 96.3 0.16 3.6E-06 50.7 15.0 226 541-766 18-274 (518)
237 COG4785 NlpI Lipoprotein NlpI, 96.3 0.3 6.6E-06 45.3 15.6 93 164-259 71-163 (297)
238 KOG2114 Vacuolar assembly/sort 96.2 1.2 2.6E-05 50.0 22.4 180 196-418 336-517 (933)
239 PF13431 TPR_17: Tetratricopep 96.2 0.0069 1.5E-07 38.4 3.4 32 761-793 2-33 (34)
240 COG1729 Uncharacterized protei 96.0 0.13 2.9E-06 50.0 12.9 96 706-802 144-244 (262)
241 KOG1585 Protein required for f 96.0 0.8 1.7E-05 43.5 17.2 203 567-796 34-250 (308)
242 PF06552 TOM20_plant: Plant sp 95.9 0.071 1.5E-06 48.2 9.4 99 721-822 8-127 (186)
243 PF10300 DUF3808: Protein of u 95.8 0.5 1.1E-05 51.9 18.0 117 682-801 246-375 (468)
244 PF10300 DUF3808: Protein of u 95.8 0.28 6.2E-06 53.8 16.0 148 674-822 193-354 (468)
245 COG4105 ComL DNA uptake lipopr 95.8 2.1 4.5E-05 41.6 21.5 53 710-762 173-228 (254)
246 PF13428 TPR_14: Tetratricopep 95.7 0.029 6.3E-07 38.2 4.9 41 706-746 3-43 (44)
247 KOG1464 COP9 signalosome, subu 95.6 2.2 4.7E-05 41.2 18.5 120 577-696 40-172 (440)
248 COG1729 Uncharacterized protei 95.6 0.32 6.8E-06 47.5 13.4 93 646-739 153-250 (262)
249 COG3118 Thioredoxin domain-con 95.6 1.5 3.3E-05 43.3 17.8 145 643-790 143-289 (304)
250 KOG4555 TPR repeat-containing 95.5 0.36 7.7E-06 40.8 11.5 92 165-259 50-145 (175)
251 KOG4234 TPR repeat-containing 95.5 0.18 3.8E-06 46.1 10.5 94 677-770 103-200 (271)
252 KOG1585 Protein required for f 95.5 2.4 5.3E-05 40.4 18.4 205 195-448 32-249 (308)
253 COG4105 ComL DNA uptake lipopr 95.5 2.7 5.9E-05 40.8 21.2 55 744-798 173-229 (254)
254 KOG1941 Acetylcholine receptor 95.4 0.42 9.1E-06 48.0 13.6 226 576-801 18-274 (518)
255 COG3118 Thioredoxin domain-con 95.4 2 4.3E-05 42.5 17.9 148 608-759 143-293 (304)
256 PF13431 TPR_17: Tetratricopep 95.3 0.02 4.3E-07 36.3 3.0 33 727-759 2-34 (34)
257 PF04840 Vps16_C: Vps16, C-ter 95.3 4.1 8.9E-05 42.1 29.4 109 428-554 179-287 (319)
258 KOG2114 Vacuolar assembly/sort 95.2 7.3 0.00016 44.2 29.1 152 322-487 335-489 (933)
259 KOG4234 TPR repeat-containing 95.2 0.26 5.6E-06 45.1 10.4 96 711-809 102-202 (271)
260 KOG1550 Extracellular protein 95.1 7.7 0.00017 43.9 25.8 247 540-802 260-538 (552)
261 PF09205 DUF1955: Domain of un 95.0 2 4.4E-05 36.6 14.5 64 707-770 89-152 (161)
262 PF04184 ST7: ST7 protein; In 95.0 2.1 4.5E-05 45.5 17.7 143 611-768 180-325 (539)
263 KOG2610 Uncharacterized conser 94.8 0.68 1.5E-05 46.0 13.1 151 575-729 114-272 (491)
264 PF13512 TPR_18: Tetratricopep 94.7 1.7 3.6E-05 38.2 14.0 52 645-697 21-75 (142)
265 PF09205 DUF1955: Domain of un 94.6 2.6 5.5E-05 36.1 14.2 139 645-805 13-152 (161)
266 KOG1920 IkappaB kinase complex 94.5 13 0.00029 44.0 27.0 24 742-765 1003-1026(1265)
267 PF04053 Coatomer_WDAD: Coatom 94.5 0.5 1.1E-05 51.1 12.7 154 207-416 274-427 (443)
268 smart00299 CLH Clathrin heavy 94.5 2.4 5.3E-05 37.8 15.4 40 606-646 14-53 (140)
269 KOG2280 Vacuolar assembly/sort 94.4 11 0.00023 42.4 34.4 111 670-798 685-795 (829)
270 PF04053 Coatomer_WDAD: Coatom 94.4 2.7 5.9E-05 45.6 17.8 156 610-798 272-427 (443)
271 PRK15180 Vi polysaccharide bio 94.3 8.3 0.00018 40.6 31.9 37 784-820 787-825 (831)
272 PF00515 TPR_1: Tetratricopept 94.2 0.11 2.5E-06 32.8 4.4 27 775-801 3-29 (34)
273 PF08631 SPO22: Meiosis protei 94.2 7.3 0.00016 39.6 27.8 62 566-628 86-150 (278)
274 PF04097 Nic96: Nup93/Nic96; 94.1 11 0.00023 43.4 22.9 88 536-628 265-356 (613)
275 COG3629 DnrI DNA-binding trans 94.0 0.57 1.2E-05 46.5 10.9 79 704-782 153-236 (280)
276 COG3629 DnrI DNA-binding trans 94.0 0.59 1.3E-05 46.4 11.0 81 739-820 154-239 (280)
277 KOG4648 Uncharacterized conser 94.0 0.26 5.7E-06 48.8 8.4 95 641-737 104-198 (536)
278 PF13176 TPR_7: Tetratricopept 94.0 0.11 2.5E-06 33.4 4.2 27 775-801 1-27 (36)
279 COG2976 Uncharacterized protei 93.9 2.5 5.5E-05 39.0 13.8 92 710-803 95-189 (207)
280 KOG0890 Protein kinase of the 93.8 27 0.00059 44.9 31.7 149 397-553 1389-1542(2382)
281 TIGR02561 HrpB1_HrpK type III 93.6 4 8.7E-05 36.0 13.9 71 717-788 23-93 (153)
282 PF09613 HrpB1_HrpK: Bacterial 93.6 5.2 0.00011 36.0 15.0 57 681-739 22-79 (160)
283 PF10345 Cohesin_load: Cohesin 93.6 17 0.00037 41.8 39.6 188 176-383 39-252 (608)
284 PF04184 ST7: ST7 protein; In 93.6 6.5 0.00014 42.0 17.9 82 740-822 261-345 (539)
285 PF00515 TPR_1: Tetratricopept 93.5 0.2 4.4E-06 31.6 4.7 32 739-770 2-33 (34)
286 PF07719 TPR_2: Tetratricopept 93.5 0.21 4.6E-06 31.4 4.8 28 741-768 4-31 (34)
287 PF12921 ATP13: Mitochondrial 93.5 1.7 3.8E-05 37.6 11.8 48 666-713 49-97 (126)
288 PF13176 TPR_7: Tetratricopept 93.5 0.074 1.6E-06 34.2 2.6 28 740-767 1-28 (36)
289 PF07719 TPR_2: Tetratricopept 93.3 0.18 3.9E-06 31.8 4.3 33 773-807 1-33 (34)
290 smart00299 CLH Clathrin heavy 93.2 5.1 0.00011 35.7 15.1 35 508-542 20-54 (140)
291 KOG1550 Extracellular protein 93.2 18 0.0004 40.9 26.4 17 543-559 378-394 (552)
292 COG4649 Uncharacterized protei 93.1 6.4 0.00014 35.5 15.7 124 644-767 68-196 (221)
293 PF12921 ATP13: Mitochondrial 93.0 1.6 3.4E-05 37.9 10.8 27 704-730 2-28 (126)
294 PF04097 Nic96: Nup93/Nic96; 93.0 7 0.00015 44.8 19.1 68 195-264 113-187 (613)
295 KOG4648 Uncharacterized conser 92.9 0.51 1.1E-05 46.9 8.3 95 674-770 102-197 (536)
296 KOG2280 Vacuolar assembly/sort 92.5 22 0.00048 40.0 34.8 111 636-764 686-796 (829)
297 COG2909 MalT ATP-dependent tra 92.4 25 0.00054 40.6 27.4 193 610-802 426-647 (894)
298 PF08631 SPO22: Meiosis protei 92.2 15 0.00032 37.4 27.2 222 611-834 5-265 (278)
299 KOG0276 Vesicle coat complex C 92.0 2.5 5.4E-05 45.7 12.6 130 136-290 618-747 (794)
300 KOG1920 IkappaB kinase complex 91.8 34 0.00074 40.9 31.1 127 648-800 894-1026(1265)
301 KOG3941 Intermediate in Toll s 91.3 2.7 5.8E-05 41.0 10.8 64 759-822 93-172 (406)
302 COG4785 NlpI Lipoprotein NlpI, 91.3 13 0.00029 35.0 20.8 186 502-698 72-266 (297)
303 COG4649 Uncharacterized protei 91.2 11 0.00024 34.1 16.2 123 575-697 69-195 (221)
304 COG2976 Uncharacterized protei 91.1 12 0.00026 34.7 14.3 118 652-770 70-191 (207)
305 KOG2062 26S proteasome regulat 91.1 30 0.00066 38.9 40.6 47 350-401 207-253 (929)
306 COG0790 FOG: TPR repeat, SEL1 91.0 20 0.00044 36.7 25.2 155 649-812 92-276 (292)
307 KOG3941 Intermediate in Toll s 90.9 1.8 3.9E-05 42.1 9.3 72 370-441 86-173 (406)
308 PF10602 RPN7: 26S proteasome 90.9 7.3 0.00016 36.3 13.4 62 636-697 38-101 (177)
309 PF10602 RPN7: 26S proteasome 90.6 3.9 8.4E-05 38.1 11.4 63 670-732 37-101 (177)
310 PF10345 Cohesin_load: Cohesin 90.4 39 0.00085 38.9 41.4 170 318-488 56-252 (608)
311 PF06552 TOM20_plant: Plant sp 90.1 3 6.4E-05 38.1 9.5 109 478-594 8-137 (186)
312 PF08424 NRDE-2: NRDE-2, neces 89.9 20 0.00043 37.3 17.2 136 686-822 48-210 (321)
313 PF13374 TPR_10: Tetratricopep 89.6 0.8 1.7E-05 30.4 4.5 29 773-801 2-30 (42)
314 KOG2396 HAT (Half-A-TPR) repea 89.4 34 0.00073 36.8 39.1 242 546-801 299-558 (568)
315 KOG4642 Chaperone-dependent E3 89.4 7 0.00015 37.4 11.6 104 677-782 18-126 (284)
316 PF02259 FAT: FAT domain; Int 89.0 33 0.00072 36.2 26.5 65 633-697 145-212 (352)
317 PF02259 FAT: FAT domain; Int 88.9 34 0.00074 36.1 24.5 117 667-784 144-303 (352)
318 PF13170 DUF4003: Protein of u 88.7 31 0.00066 35.3 19.8 147 651-799 79-243 (297)
319 PF13181 TPR_8: Tetratricopept 88.4 0.77 1.7E-05 28.8 3.5 27 775-801 3-29 (34)
320 KOG2066 Vacuolar assembly/sort 88.3 52 0.0011 37.5 26.5 172 163-348 361-532 (846)
321 TIGR02561 HrpB1_HrpK type III 88.2 18 0.00039 32.1 13.7 51 474-524 23-73 (153)
322 KOG0376 Serine-threonine phosp 88.2 0.84 1.8E-05 48.1 5.4 107 713-822 13-119 (476)
323 PF09613 HrpB1_HrpK: Bacterial 87.8 7.2 0.00016 35.1 10.2 53 472-524 21-73 (160)
324 COG1747 Uncharacterized N-term 87.8 44 0.00095 36.0 23.7 180 563-749 65-250 (711)
325 KOG2471 TPR repeat-containing 87.6 35 0.00076 36.4 16.3 119 713-832 249-397 (696)
326 KOG0276 Vesicle coat complex C 87.5 4.5 9.7E-05 43.9 10.2 131 322-485 615-745 (794)
327 PF13174 TPR_6: Tetratricopept 87.5 1 2.3E-05 27.9 3.7 26 776-801 3-28 (33)
328 PF13170 DUF4003: Protein of u 87.0 23 0.00049 36.2 14.8 130 546-677 79-225 (297)
329 KOG4642 Chaperone-dependent E3 86.3 10 0.00022 36.4 10.6 86 471-556 20-105 (284)
330 PF13174 TPR_6: Tetratricopept 86.0 1.4 3E-05 27.2 3.7 31 740-770 2-32 (33)
331 PF13181 TPR_8: Tetratricopept 86.0 1.5 3.2E-05 27.5 3.9 31 739-769 2-32 (34)
332 KOG3364 Membrane protein invol 85.6 22 0.00048 30.8 11.3 66 736-801 30-99 (149)
333 KOG4507 Uncharacterized conser 85.4 2.9 6.3E-05 45.0 7.5 100 680-780 618-717 (886)
334 KOG1308 Hsp70-interacting prot 85.3 0.56 1.2E-05 46.9 2.3 90 717-807 127-216 (377)
335 PF08424 NRDE-2: NRDE-2, neces 85.2 50 0.0011 34.4 16.8 89 484-573 8-108 (321)
336 PF13374 TPR_10: Tetratricopep 84.8 2.3 5.1E-05 28.0 4.6 29 739-767 3-31 (42)
337 PF07035 Mic1: Colon cancer-as 84.4 33 0.00071 31.4 15.1 25 323-347 91-115 (167)
338 COG3947 Response regulator con 84.0 48 0.001 33.0 17.0 58 708-765 283-340 (361)
339 KOG4570 Uncharacterized conser 83.9 12 0.00026 37.4 10.3 103 559-663 59-164 (418)
340 COG4455 ImpE Protein of avirul 83.7 7.2 0.00016 36.7 8.4 76 707-782 4-81 (273)
341 PF14561 TPR_20: Tetratricopep 83.6 16 0.00034 29.5 9.6 39 762-801 12-50 (90)
342 PF09986 DUF2225: Uncharacteri 83.5 16 0.00035 35.2 11.4 67 740-806 120-198 (214)
343 PF07575 Nucleopor_Nup85: Nup8 83.5 82 0.0018 35.9 18.9 65 446-524 390-454 (566)
344 PF14853 Fis1_TPR_C: Fis1 C-te 82.8 6.6 0.00014 27.9 6.1 37 776-814 4-40 (53)
345 PF11207 DUF2989: Protein of u 82.3 11 0.00024 35.4 9.1 72 721-793 123-198 (203)
346 KOG2066 Vacuolar assembly/sort 82.2 1E+02 0.0022 35.4 28.9 168 201-419 363-533 (846)
347 PF07721 TPR_4: Tetratricopept 82.1 2 4.3E-05 25.1 2.9 22 776-797 4-25 (26)
348 PRK11619 lytic murein transgly 81.5 1.1E+02 0.0024 35.4 41.5 138 331-478 43-180 (644)
349 KOG0545 Aryl-hydrocarbon recep 81.3 30 0.00065 33.4 11.5 99 672-770 181-296 (329)
350 COG0790 FOG: TPR repeat, SEL1 81.2 68 0.0015 32.8 24.6 148 614-770 92-269 (292)
351 COG4455 ImpE Protein of avirul 81.2 12 0.00027 35.3 8.9 141 671-822 3-158 (273)
352 KOG2396 HAT (Half-A-TPR) repea 80.8 88 0.0019 33.8 42.1 92 177-272 90-182 (568)
353 PF14561 TPR_20: Tetratricopep 80.4 20 0.00043 28.9 9.0 66 725-790 9-75 (90)
354 TIGR02508 type_III_yscG type I 80.3 20 0.00042 29.2 8.5 79 173-259 20-98 (115)
355 KOG4570 Uncharacterized conser 80.0 23 0.00049 35.5 10.7 100 594-697 59-163 (418)
356 COG3947 Response regulator con 79.9 12 0.00026 37.0 8.7 69 741-810 282-355 (361)
357 KOG1586 Protein required for f 79.4 62 0.0013 31.2 23.2 88 683-770 128-227 (288)
358 PRK10941 hypothetical protein; 79.1 16 0.00034 36.7 9.8 62 709-770 186-247 (269)
359 cd00923 Cyt_c_Oxidase_Va Cytoc 79.1 14 0.00031 29.7 7.4 40 692-731 30-69 (103)
360 PRK10941 hypothetical protein; 78.7 29 0.00062 34.8 11.5 78 741-819 184-262 (269)
361 COG1747 Uncharacterized N-term 78.7 1E+02 0.0022 33.4 25.8 182 596-785 63-251 (711)
362 PF11207 DUF2989: Protein of u 78.5 19 0.00041 33.8 9.3 75 681-757 119-197 (203)
363 KOG1586 Protein required for f 78.1 68 0.0015 30.9 21.5 17 646-662 166-182 (288)
364 TIGR02508 type_III_yscG type I 78.1 24 0.00051 28.7 8.3 60 745-811 46-105 (115)
365 PF10579 Rapsyn_N: Rapsyn N-te 78.0 6.1 0.00013 30.5 4.9 47 750-796 18-66 (80)
366 PF07721 TPR_4: Tetratricopept 77.9 3.2 6.9E-05 24.2 2.8 23 740-762 3-25 (26)
367 KOG4507 Uncharacterized conser 77.4 9.8 0.00021 41.3 8.0 102 457-558 603-705 (886)
368 smart00028 TPR Tetratricopepti 77.3 4 8.7E-05 24.3 3.5 25 776-800 4-28 (34)
369 PF00637 Clathrin: Region in C 76.9 2 4.2E-05 38.6 2.6 123 201-336 14-140 (143)
370 smart00028 TPR Tetratricopepti 76.5 4.6 9.9E-05 24.0 3.7 31 739-769 2-32 (34)
371 PF09477 Type_III_YscG: Bacter 75.9 44 0.00096 27.7 9.9 79 173-259 21-99 (116)
372 PF07035 Mic1: Colon cancer-as 74.6 70 0.0015 29.3 15.8 131 341-485 14-144 (167)
373 PF09986 DUF2225: Uncharacteri 73.3 53 0.0011 31.7 11.4 63 708-770 122-197 (214)
374 PRK09687 putative lyase; Provi 72.9 1.1E+02 0.0025 31.0 28.8 234 562-819 35-278 (280)
375 PF02284 COX5A: Cytochrome c o 72.3 47 0.001 27.2 8.8 41 693-733 34-74 (108)
376 TIGR03504 FimV_Cterm FimV C-te 71.9 7.1 0.00015 26.4 3.6 23 779-801 5-27 (44)
377 PRK11619 lytic murein transgly 71.1 2.1E+02 0.0045 33.2 39.9 117 439-556 254-373 (644)
378 KOG2063 Vacuolar assembly/sort 70.9 2.3E+02 0.005 33.7 19.1 116 322-437 505-637 (877)
379 TIGR03504 FimV_Cterm FimV C-te 70.4 10 0.00022 25.6 4.1 26 234-259 4-29 (44)
380 KOG0545 Aryl-hydrocarbon recep 70.0 72 0.0016 30.9 10.9 96 710-808 184-297 (329)
381 PF02284 COX5A: Cytochrome c o 69.2 63 0.0014 26.6 9.6 51 444-494 28-78 (108)
382 PRK15180 Vi polysaccharide bio 68.5 1.7E+02 0.0038 31.3 28.4 130 368-501 301-431 (831)
383 KOG0551 Hsp90 co-chaperone CNS 67.4 38 0.00083 34.3 9.0 96 670-765 82-180 (390)
384 KOG0292 Vesicle coat complex C 65.8 2.7E+02 0.0059 32.6 20.0 37 739-775 1085-1121(1202)
385 KOG1464 COP9 signalosome, subu 65.0 1.5E+02 0.0032 29.2 23.5 169 569-744 150-343 (440)
386 PF04910 Tcf25: Transcriptiona 64.7 2E+02 0.0042 30.6 19.7 89 711-801 110-221 (360)
387 cd00923 Cyt_c_Oxidase_Va Cytoc 64.4 77 0.0017 25.8 8.8 46 443-488 24-69 (103)
388 PF12862 Apc5: Anaphase-promot 64.4 46 0.001 27.0 7.8 25 777-801 45-69 (94)
389 COG2909 MalT ATP-dependent tra 64.4 2.9E+02 0.0064 32.5 31.2 190 540-729 469-684 (894)
390 PF00637 Clathrin: Region in C 64.3 4.5 9.8E-05 36.2 2.1 83 362-451 13-95 (143)
391 KOG0530 Protein farnesyltransf 64.0 1.6E+02 0.0034 29.2 16.9 130 611-743 55-186 (318)
392 COG4976 Predicted methyltransf 63.6 12 0.00027 35.5 4.6 56 715-770 6-61 (287)
393 PF04190 DUF410: Protein of un 63.5 1.7E+02 0.0036 29.4 19.7 82 668-767 89-170 (260)
394 KOG0376 Serine-threonine phosp 63.4 19 0.0004 38.5 6.4 89 436-526 14-103 (476)
395 PF07575 Nucleopor_Nup85: Nup8 62.8 2.6E+02 0.0057 31.9 16.2 25 358-382 150-174 (566)
396 PF04910 Tcf25: Transcriptiona 62.8 2.1E+02 0.0046 30.3 21.7 56 677-732 111-167 (360)
397 PF10579 Rapsyn_N: Rapsyn N-te 62.4 23 0.00049 27.5 5.0 48 716-763 18-68 (80)
398 PRK09687 putative lyase; Provi 62.3 1.8E+02 0.004 29.5 28.7 121 598-732 141-262 (280)
399 PF14853 Fis1_TPR_C: Fis1 C-te 61.8 27 0.00058 24.8 5.1 29 742-770 5-33 (53)
400 PF10255 Paf67: RNA polymerase 61.8 2.3E+02 0.005 30.4 15.4 59 708-766 126-192 (404)
401 KOG1308 Hsp70-interacting prot 61.6 10 0.00022 38.4 4.0 89 682-771 127-215 (377)
402 COG5159 RPN6 26S proteasome re 59.4 1.9E+02 0.0042 28.8 18.4 300 200-543 9-333 (421)
403 KOG0551 Hsp90 co-chaperone CNS 58.9 78 0.0017 32.3 9.4 95 636-732 83-181 (390)
404 KOG3364 Membrane protein invol 58.2 1.3E+02 0.0028 26.4 9.4 70 701-770 29-103 (149)
405 PF07163 Pex26: Pex26 protein; 58.1 1.3E+02 0.0029 30.0 10.5 56 606-661 90-145 (309)
406 COG5187 RPN7 26S proteasome re 57.9 2.1E+02 0.0045 28.7 15.5 23 670-692 116-138 (412)
407 PF08311 Mad3_BUB1_I: Mad3/BUB 57.9 87 0.0019 27.2 8.8 44 212-255 81-125 (126)
408 cd08819 CARD_MDA5_2 Caspase ac 57.3 88 0.0019 24.9 7.5 66 213-284 21-86 (88)
409 KOG1839 Uncharacterized protei 57.2 89 0.0019 38.1 11.1 156 643-798 941-1124(1236)
410 KOG0890 Protein kinase of the 56.2 6.3E+02 0.014 33.7 38.7 64 736-802 1668-1731(2382)
411 KOG4814 Uncharacterized conser 56.0 1.2E+02 0.0025 34.0 10.7 58 708-765 398-455 (872)
412 COG4976 Predicted methyltransf 55.4 23 0.00049 33.9 4.8 60 747-809 4-63 (287)
413 PF12968 DUF3856: Domain of Un 55.3 1.3E+02 0.0029 25.6 10.8 62 739-800 56-127 (144)
414 KOG2471 TPR repeat-containing 54.9 3.1E+02 0.0068 29.8 25.7 120 492-612 237-382 (696)
415 PF12862 Apc5: Anaphase-promot 54.3 1.1E+02 0.0024 24.8 8.4 27 741-767 44-70 (94)
416 PF04190 DUF410: Protein of un 53.9 2.4E+02 0.0053 28.2 16.7 139 331-488 20-168 (260)
417 smart00386 HAT HAT (Half-A-TPR 51.6 39 0.00084 20.2 4.3 26 753-779 2-27 (33)
418 COG5191 Uncharacterized conser 51.3 45 0.00097 33.4 6.3 55 716-770 119-174 (435)
419 KOG0530 Protein farnesyltransf 51.2 2.6E+02 0.0056 27.7 14.8 174 644-822 53-236 (318)
420 PF10255 Paf67: RNA polymerase 51.0 30 0.00066 36.8 5.6 112 739-850 123-272 (404)
421 cd00280 TRFH Telomeric Repeat 50.6 2.1E+02 0.0046 26.6 9.9 47 720-766 85-139 (200)
422 PF07163 Pex26: Pex26 protein; 49.9 1.7E+02 0.0038 29.2 9.9 87 536-622 90-181 (309)
423 COG2912 Uncharacterized conser 49.2 1.3E+02 0.0028 30.0 9.1 69 743-814 186-254 (269)
424 smart00386 HAT HAT (Half-A-TPR 49.2 39 0.00084 20.2 4.0 29 718-746 1-29 (33)
425 PF04090 RNA_pol_I_TF: RNA pol 48.8 2.4E+02 0.0053 26.7 11.8 29 635-663 42-70 (199)
426 COG4941 Predicted RNA polymera 48.6 3E+02 0.0066 28.3 11.5 118 650-770 272-397 (415)
427 KOG2422 Uncharacterized conser 47.8 4.4E+02 0.0095 29.4 17.6 30 772-801 482-515 (665)
428 PF09670 Cas_Cas02710: CRISPR- 47.5 3.1E+02 0.0068 29.3 12.7 56 607-663 139-198 (379)
429 PF09670 Cas_Cas02710: CRISPR- 47.5 3.8E+02 0.0082 28.7 13.3 55 643-698 140-198 (379)
430 KOG4814 Uncharacterized conser 47.0 1.3E+02 0.0028 33.7 9.4 85 716-801 366-456 (872)
431 COG5191 Uncharacterized conser 46.5 79 0.0017 31.8 7.2 80 459-538 105-185 (435)
432 KOG2005 26S proteasome regulat 46.3 4.9E+02 0.011 29.6 28.4 97 395-522 182-279 (878)
433 PF08311 Mad3_BUB1_I: Mad3/BUB 45.8 1.7E+02 0.0037 25.4 8.6 44 756-799 81-125 (126)
434 PF02184 HAT: HAT (Half-A-TPR) 45.2 49 0.0011 20.6 3.5 24 210-235 3-26 (32)
435 PF00244 14-3-3: 14-3-3 protei 45.1 2.5E+02 0.0053 27.7 10.7 19 748-766 179-197 (236)
436 KOG2581 26S proteasome regulat 44.6 4.1E+02 0.0089 28.2 12.0 138 633-770 125-279 (493)
437 KOG2422 Uncharacterized conser 44.1 5E+02 0.011 29.0 18.1 157 611-767 250-448 (665)
438 KOG0128 RNA-binding protein SA 44.0 5.9E+02 0.013 29.8 37.7 97 320-419 112-218 (881)
439 PF11846 DUF3366: Domain of un 43.0 1.4E+02 0.003 28.2 8.6 35 701-735 141-175 (193)
440 PF13929 mRNA_stabil: mRNA sta 42.9 3.7E+02 0.0081 27.2 15.8 87 735-821 199-291 (292)
441 KOG0403 Neoplastic transformat 42.7 4.6E+02 0.01 28.2 31.0 73 638-715 513-585 (645)
442 KOG0292 Vesicle coat complex C 42.6 6.4E+02 0.014 29.8 20.9 130 274-455 653-782 (1202)
443 KOG4279 Serine/threonine prote 42.3 6E+02 0.013 29.4 14.6 117 584-705 183-321 (1226)
444 KOG4077 Cytochrome c oxidase, 41.9 1.7E+02 0.0037 25.2 7.4 36 698-733 78-113 (149)
445 KOG3824 Huntingtin interacting 41.5 86 0.0019 31.4 6.6 55 716-770 128-182 (472)
446 PF04762 IKI3: IKI3 family; I 40.7 2.3E+02 0.005 34.5 11.5 41 805-846 885-925 (928)
447 KOG2908 26S proteasome regulat 40.5 2.3E+02 0.005 29.2 9.4 70 715-784 86-167 (380)
448 PRK13342 recombination factor 39.6 5.3E+02 0.011 28.0 18.4 26 542-567 243-268 (413)
449 smart00777 Mad3_BUB1_I Mad3/BU 39.1 1.3E+02 0.0029 26.0 6.7 70 176-254 51-124 (125)
450 PF13762 MNE1: Mitochondrial s 38.9 2.9E+02 0.0062 24.7 11.8 91 347-437 28-126 (145)
451 COG4259 Uncharacterized protei 38.9 1.7E+02 0.0037 23.9 6.6 52 758-811 57-108 (121)
452 PF07720 TPR_3: Tetratricopept 37.7 1.1E+02 0.0024 19.6 4.8 17 779-795 7-23 (36)
453 KOG0687 26S proteasome regulat 37.7 4.7E+02 0.01 26.9 15.8 17 613-629 36-52 (393)
454 COG5187 RPN7 26S proteasome re 37.0 4.5E+02 0.0098 26.4 16.6 100 633-734 114-222 (412)
455 KOG2300 Uncharacterized conser 36.6 6E+02 0.013 27.8 39.2 163 645-810 334-523 (629)
456 KOG1839 Uncharacterized protei 36.5 3.6E+02 0.0077 33.4 11.7 100 598-697 972-1085(1236)
457 PF11846 DUF3366: Domain of un 36.4 94 0.002 29.4 6.2 42 215-258 132-173 (193)
458 KOG2063 Vacuolar assembly/sort 36.0 8.4E+02 0.018 29.3 28.0 38 679-716 601-638 (877)
459 PRK12798 chemotaxis protein; R 35.9 5.8E+02 0.013 27.4 24.6 193 612-809 125-331 (421)
460 PF11817 Foie-gras_1: Foie gra 35.6 1.5E+02 0.0032 29.5 7.6 22 709-730 183-204 (247)
461 PF09477 Type_III_YscG: Bacter 35.5 2.7E+02 0.0058 23.3 8.3 17 784-800 80-96 (116)
462 KOG2908 26S proteasome regulat 35.0 5.3E+02 0.012 26.7 17.1 80 743-822 80-170 (380)
463 PRK13342 recombination factor 34.5 6.3E+02 0.014 27.4 17.5 32 648-679 244-275 (413)
464 PF10366 Vps39_1: Vacuolar sor 34.5 2.8E+02 0.006 23.3 8.5 27 531-557 41-67 (108)
465 PF00244 14-3-3: 14-3-3 protei 34.1 3.8E+02 0.0082 26.4 10.1 48 685-732 142-197 (236)
466 KOG0991 Replication factor C, 33.8 4.6E+02 0.0099 25.6 13.0 136 565-710 131-279 (333)
467 PF11663 Toxin_YhaV: Toxin wit 33.7 47 0.001 28.9 3.1 32 333-366 107-138 (140)
468 PF12968 DUF3856: Domain of Un 33.7 3.1E+02 0.0067 23.5 10.6 86 681-766 21-128 (144)
469 PF11848 DUF3368: Domain of un 33.3 1.5E+02 0.0034 20.4 5.1 34 331-364 12-45 (48)
470 PRK14700 recombination factor 33.0 4.2E+02 0.0091 27.0 10.1 62 605-666 129-198 (300)
471 PF14689 SPOB_a: Sensor_kinase 32.6 1.1E+02 0.0024 22.5 4.7 22 639-660 28-49 (62)
472 PF13762 MNE1: Mitochondrial s 32.5 3.7E+02 0.0079 24.1 10.5 81 602-682 42-128 (145)
473 KOG0128 RNA-binding protein SA 32.3 8.9E+02 0.019 28.5 39.3 66 192-258 111-179 (881)
474 cd00280 TRFH Telomeric Repeat 31.9 4.3E+02 0.0093 24.7 9.2 48 685-732 85-139 (200)
475 KOG4077 Cytochrome c oxidase, 31.8 2.7E+02 0.0059 24.0 7.1 46 446-491 69-114 (149)
476 KOG2659 LisH motif-containing 31.5 4.7E+02 0.01 25.4 9.6 106 183-290 15-129 (228)
477 KOG2300 Uncharacterized conser 31.5 7.3E+02 0.016 27.2 37.3 141 679-822 333-499 (629)
478 PF14689 SPOB_a: Sensor_kinase 31.2 1.1E+02 0.0025 22.5 4.5 29 425-453 22-50 (62)
479 COG2912 Uncharacterized conser 31.1 2.4E+02 0.0051 28.2 7.8 62 709-770 186-247 (269)
480 KOG4521 Nuclear pore complex, 30.1 7.1E+02 0.015 30.6 12.3 124 498-627 986-1131(1480)
481 cd08819 CARD_MDA5_2 Caspase ac 30.1 2.9E+02 0.0063 22.1 7.0 66 339-410 20-85 (88)
482 COG0735 Fur Fe2+/Zn2+ uptake r 30.0 2.3E+02 0.0049 25.4 7.1 42 745-786 27-68 (145)
483 PF11663 Toxin_YhaV: Toxin wit 29.4 56 0.0012 28.4 2.9 34 168-204 105-138 (140)
484 KOG1114 Tripeptidyl peptidase 29.1 1.1E+03 0.023 28.4 16.4 40 713-752 1240-1281(1304)
485 PF10366 Vps39_1: Vacuolar sor 28.8 1.1E+02 0.0023 25.8 4.5 27 775-801 41-67 (108)
486 KOG4521 Nuclear pore complex, 28.3 1.2E+03 0.026 28.8 15.5 79 636-721 985-1071(1480)
487 PF11848 DUF3368: Domain of un 27.9 2.1E+02 0.0045 19.8 5.2 32 784-815 13-44 (48)
488 PRK10564 maltose regulon perip 27.9 1.3E+02 0.0027 30.5 5.4 43 225-267 252-295 (303)
489 KOG2062 26S proteasome regulat 27.3 1E+03 0.022 27.6 39.9 122 642-766 509-634 (929)
490 KOG3807 Predicted membrane pro 27.2 7E+02 0.015 25.6 13.8 165 570-748 190-355 (556)
491 KOG3824 Huntingtin interacting 26.8 1.6E+02 0.0035 29.6 5.9 53 748-801 126-178 (472)
492 PRK12798 chemotaxis protein; R 26.8 8.2E+02 0.018 26.3 22.7 200 241-463 124-332 (421)
493 PHA02875 ankyrin repeat protei 26.7 7.7E+02 0.017 26.6 12.2 200 214-450 15-223 (413)
494 PRK10564 maltose regulon perip 26.7 1.2E+02 0.0026 30.7 5.0 43 319-361 254-297 (303)
495 smart00777 Mad3_BUB1_I Mad3/BU 26.3 4.3E+02 0.0094 22.9 9.3 41 757-797 82-123 (125)
496 KOG2034 Vacuolar sorting prote 26.2 1.2E+03 0.025 27.9 29.3 358 237-659 366-746 (911)
497 PRK09857 putative transposase; 26.1 4.8E+02 0.01 26.7 9.5 57 750-807 218-274 (292)
498 KOG1166 Mitotic checkpoint ser 25.6 4.3E+02 0.0093 32.1 10.1 75 748-822 88-163 (974)
499 PF10516 SHNi-TPR: SHNi-TPR; 25.5 1.4E+02 0.0031 19.4 3.6 28 774-801 2-29 (38)
500 cd02682 MIT_AAA_Arch MIT: doma 25.3 1.5E+02 0.0032 23.0 4.2 45 142-205 16-60 (75)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-78 Score=717.40 Aligned_cols=663 Identities=17% Similarity=0.191 Sum_probs=612.4
Q ss_pred cccccccccccCCcccccccccccccccccccccccCCchhHHHhhccccccHHHHhhHhhhhcC----h-----hHHHH
Q 003020 96 TWVDVRIGNERRTDVISAVCVNGEVQTKCSTKWARYGGCIPSMLQALDTVKDLDEALKPWAENLS----N-----KERSI 166 (856)
Q Consensus 96 ~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~----~-----~~~~~ 166 (856)
.++.++..|.+.|++++|..+|+.+...... .-......++.++...+.++.+...+...+. + +.+-.
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESMQELRVP---VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---CChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 4677888888888888888888876553211 1112234667777777777777777754211 1 22334
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHH
Q 003020 167 ILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKE 246 (856)
Q Consensus 167 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 246 (856)
.+.+.|+++.|+++|+.|. +||+.+||.+|.+|++.|++++|.++|++|...|+.||..||+.++++|+..++..
T Consensus 130 ~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 4677899999999999995 57899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHH
Q 003020 247 EAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNT 326 (856)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (856)
.+.+++..|.+.|+.||..+++.++.+|++.|++++|..+|++|. .+|.++||+
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~--------------------------~~d~~s~n~ 258 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP--------------------------RRDCISWNA 258 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC--------------------------CCCcchhHH
Confidence 999999999999999999999999999999999999999999875 347799999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 003020 327 LIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDK 406 (856)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 406 (856)
+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..+.+.|+.||..+||+|+.+|++.|+
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHH
Q 003020 407 ISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRR 486 (856)
Q Consensus 407 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 486 (856)
+++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..|++.++.+|++.|+++.|.++++.
T Consensus 339 ~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 414 (857)
T PLN03077 339 WGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414 (857)
T ss_pred HHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHH
Confidence 999999999997 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCC-CCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 003020 487 FHLAGD-MSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKC 565 (856)
Q Consensus 487 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 565 (856)
+...+. .+..+++.++++|.+.|++++|.++|+.+.+ ++..+|+.++.+|++.|+.++|+.+|++|.. ++.||..
T Consensus 415 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~ 490 (857)
T PLN03077 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490 (857)
T ss_pred HHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh
Confidence 987764 5677899999999999999999999998874 5788999999999999999999999999986 5999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFA 645 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 645 (856)
||+.++.+|++.|..+.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|+.+ .||..+||++|.+|+
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~ 565 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYV 565 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 679999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLR-SLEASPDVYTSNCMIDLYSERSMVRQAE 724 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 724 (856)
+.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.++.|+..+|++++++|++.|++++|.
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999 5899999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003020 725 EIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAI 804 (856)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 804 (856)
+++++|. ..||..+|.+|+.+|...|+.+.|+...+++.+..|. +...|..+++.|+..|+|++|.++++.|.+.|+
T Consensus 646 ~~~~~m~--~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 646 NFINKMP--ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred HHHHHCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 9999995 4789999999999999999999999999999999887 889999999999999999999999999999999
Q ss_pred CCCH
Q 003020 805 QPDD 808 (856)
Q Consensus 805 ~p~~ 808 (856)
++++
T Consensus 723 ~k~~ 726 (857)
T PLN03077 723 TVDP 726 (857)
T ss_pred CCCC
Confidence 8765
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.3e-74 Score=680.20 Aligned_cols=615 Identities=20% Similarity=0.233 Sum_probs=591.0
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 003020 190 HELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGI 269 (856)
Q Consensus 190 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 269 (856)
..++..++|.++..+++.|++++|..+|+.|.+.|+.|+..+|..++.+|.+.+..+.|..++..+.+.+..++..+++.
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 36778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 270 VVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLR 349 (856)
Q Consensus 270 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 349 (856)
++.+|++.|+++.|..+|++|. .+|..+||.+|.+|++.|++++|+++|++|..
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~--------------------------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~ 180 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMP--------------------------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCC--------------------------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999999999875 35789999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhH
Q 003020 350 EGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSY 429 (856)
Q Consensus 350 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 429 (856)
.|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..++|+|+.+|++.|++++|.++|++|. .||..+|
T Consensus 181 ~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~ 256 (857)
T PLN03077 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISW 256 (857)
T ss_pred cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 4899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchhhHHHHHHHhhc
Q 003020 430 RTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAG-DMSSEGYSANIDGYGER 508 (856)
Q Consensus 430 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 508 (856)
|.++.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|.+.|+.+.+.+++..+...+ .++..+++.++.+|.+.
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998765 56788999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 003020 509 GHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLR 588 (856)
Q Consensus 509 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~ 588 (856)
|++++|.++|+.+. .++..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++
T Consensus 337 g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 337 GSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred CCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999986 467889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003020 589 KMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPN 668 (856)
Q Consensus 589 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 668 (856)
.+.+.|+.|+..+|+.|+++|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|+.+|++|.. +++||
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd 488 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPN 488 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCC
Confidence 99999999999999999999999999999999999995 57889999999999999999999999999986 58999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
..||+.++.+|++.|..+.+.+++..+.+.|+.++..+++.|+++|++.|++++|.++|+.+ ++|..+|+.|+.+|
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~ 564 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGY 564 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 67999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcC-----
Q 003020 749 KRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMV-NAAIQPDDFTFKSLGAVLMKCG----- 822 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~G----- 822 (856)
++.|+.++|+++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|++++.+|+++|
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999 6899999999999999999999
Q ss_pred HHHHHhhcchhhHHHHHHHHhhHh
Q 003020 823 LELTRKKNAQSGLQAWMSTLSSVI 846 (856)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~ 846 (856)
.+.+.+|+..|+..+|.++++.+.
T Consensus 645 ~~~~~~m~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 645 YNFINKMPITPDPAVWGALLNACR 668 (857)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHH
Confidence 777778889999999999999873
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.5e-64 Score=579.26 Aligned_cols=524 Identities=16% Similarity=0.231 Sum_probs=413.8
Q ss_pred CCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchh
Q 003020 225 IVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGM-EPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTK 303 (856)
Q Consensus 225 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 303 (856)
..++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~------------ 433 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR------------ 433 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC------------
Confidence 345677888888888888889999999999888874 5677778888888888888888888887763
Q ss_pred hhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003020 304 TMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKME 383 (856)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 383 (856)
.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 434 --------------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~ 499 (1060)
T PLN03218 434 --------------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499 (1060)
T ss_pred --------------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 167888999999999999999999999999888888898899999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhc--CCCCCCH
Q 003020 384 ELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDG--GGLEIDE 461 (856)
Q Consensus 384 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~p~~ 461 (856)
+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||.
T Consensus 500 ~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence 88888899999999999999999999999999998888888988999999999999999999999988875 5788888
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Q 003020 462 YTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGM 541 (856)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 541 (856)
.+|+.++.+|++.|++++|.++|+.+...+ .+++..+|+.+|.+|++
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~g---------------------------------i~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYN---------------------------------IKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---------------------------------CCCChHHHHHHHHHHHh
Confidence 888888888888888888877777766332 14556667777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 003020 542 GRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEV 621 (856)
Q Consensus 542 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 621 (856)
.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003020 622 YKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEAS 701 (856)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 701 (856)
|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.
T Consensus 707 f~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 77777666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHcCCHHHH
Q 003020 702 PDVYTSNCMIDLYSE-----------------------RSMVRQAEEIFEIMKKKG-DANEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 702 p~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 757 (856)
||..+|++++..|.+ .+..++|..+|++|.+.+ .||..+|..++.+++..+..+.+
T Consensus 787 pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~ 866 (1060)
T PLN03218 787 PNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLR 866 (1060)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHH
Confidence 777777776654321 122467888999999888 78888999988888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 758 TRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 758 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
..+++.+...+..|+..+|+.++.++.+. .++|..++++|.+.|+.|+..
T Consensus 867 ~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 867 NRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 88888887777777888999999887322 368999999999999888875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.5e-64 Score=577.28 Aligned_cols=534 Identities=17% Similarity=0.220 Sum_probs=434.8
Q ss_pred HHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHH
Q 003020 168 LKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEE 247 (856)
Q Consensus 168 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 247 (856)
+.+.|++++|+++|++|.+.+..+++..+++.++..|.+.|..++|..+|+.|.. ||..+|+.++.+|++.|++++
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~ 455 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDG 455 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHH
Confidence 4456888888888888887776667777788888888888888888888887764 788888888888888888888
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHH
Q 003020 248 AVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTL 327 (856)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (856)
|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|. ..+..||..+|+.+
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~----------------------~~Gv~PdvvTynaL 513 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV----------------------NAGVEANVHTFGAL 513 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH----------------------HcCCCCCHHHHHHH
Confidence 88888888888888888888888888888888888888888886 34566788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHccC
Q 003020 328 IDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEE--LHCPPDTRTYNILIFLHAKND 405 (856)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g 405 (856)
|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ .++.||..+|+++|.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 888888888888888888888888888888888888888888888888888888875 467788888888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHH
Q 003020 406 KISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFR 485 (856)
Q Consensus 406 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 485 (856)
++++|.++|++|.+.|++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888877777777777766
Q ss_pred HHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 003020 486 RFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKC 565 (856)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 565 (856)
.+... ...++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 674 eM~k~---------------------------------G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv 720 (1060)
T PLN03218 674 DARKQ---------------------------------GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720 (1060)
T ss_pred HHHHc---------------------------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 66522 225678888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFA 645 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 645 (856)
+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888876543
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEE 725 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 725 (856)
+++++|..+.+.+...+. +......+..++|+.+|++|.+.|+.||..+|+.++.+++..+..+.+..
T Consensus 801 --~~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~ 868 (1060)
T PLN03218 801 --RRFEKACALGEPVVSFDS----------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNR 868 (1060)
T ss_pred --HHHHHHhhhhhhhhhhhc----------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHH
Confidence 245666555444432210 11111223456799999999999999999999999988888999999999
Q ss_pred HHHHHHhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 726 IFEIMKKKG-DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLL 774 (856)
Q Consensus 726 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 774 (856)
+++.|...+ +++..+|+.|+.++.+. .++|..++++|.+.|+.|+..
T Consensus 869 m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 869 LIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999887665 78899999999998432 468999999999999998764
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.4e-60 Score=546.47 Aligned_cols=514 Identities=20% Similarity=0.250 Sum_probs=463.6
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 003020 191 ELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKG-IVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGI 269 (856)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 269 (856)
..+..+|+.+|..+.+.|++++|.++|+.|...+ ..||..+|+.++.+|.+.++.+.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4566789999999999999999999999998764 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 270 VVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLR 349 (856)
Q Consensus 270 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 349 (856)
++.+|++.|++++|.++|++|. .+|.++||.+|.+|++.|++++|+++|++|.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~--------------------------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~ 217 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP--------------------------ERNLASWGTIIGGLVDAGNYREAFALFREMWE 217 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC--------------------------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999875 25789999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhH
Q 003020 350 EGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSY 429 (856)
Q Consensus 350 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 429 (856)
.|+.|+..||+.++.+|++.|..+.+.+++..+.+.|+.||..+||+|+++|+++|++++|.++|++|. ++|..+|
T Consensus 218 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~ 293 (697)
T PLN03081 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAW 293 (697)
T ss_pred hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 4799999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcC
Q 003020 430 RTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERG 509 (856)
Q Consensus 430 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 509 (856)
|.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 294 n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~-------------------------------------- 335 (697)
T PLN03081 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF-------------------------------------- 335 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--------------------------------------
Confidence 999999999999999999999999999988877766665554
Q ss_pred CHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 003020 510 HVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRK 589 (856)
Q Consensus 510 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~ 589 (856)
++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++
T Consensus 336 ------------------------------~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 385 (697)
T PLN03081 336 ------------------------------SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385 (697)
T ss_pred ------------------------------HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh
Confidence 44556677778888888889999999999999999999999999999998
Q ss_pred HHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCC
Q 003020 590 MQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMES-AGLPPN 668 (856)
Q Consensus 590 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~ 668 (856)
|.+ +|..+|++++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+
T Consensus 386 m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 386 MPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred CCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 864 688999999999999999999999999999999999999999999999999999999999999975 689999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
..+|+.++++|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+++.|..+++++.+..|.+..+|..|+.+|
T Consensus 462 ~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 462 AMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred ccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 999999999999999999999998764 67899999999999999999999999999999988888889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH---HHH--------hcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 749 KRNGRFEEATRIAKQMRESGLISDL-LSYNNVLG---LYA--------VDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~---~~~--------~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
++.|++++|.+++++|.+.|+.+.+ .+|..+.. .+. ...-++...++.++|.+.|+.||..
T Consensus 539 ~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999999999999986443 33322110 000 0112455667888899999999854
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-59 Score=543.56 Aligned_cols=476 Identities=18% Similarity=0.282 Sum_probs=428.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHH
Q 003020 263 DEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASE 342 (856)
Q Consensus 263 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 342 (856)
+..+++.++..+.+.|++++|.++|+.+.. .....|+..+|+.++.++.+.++++.|.+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~---------------------~~~~~~~~~t~~~ll~a~~~~~~~~~a~~ 144 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEA---------------------GCPFTLPASTYDALVEACIALKSIRCVKA 144 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHh---------------------cCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 445666667777777777777777766642 22345678888888888888888888888
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 003020 343 TFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANL 422 (856)
Q Consensus 343 ~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 422 (856)
++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+||+++.+|++.|++++|+++|++|.+.|+
T Consensus 145 l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 220 (697)
T PLN03081 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220 (697)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888888888888888886 47888888888888888888888888888888888
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHH
Q 003020 423 EPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANI 502 (856)
Q Consensus 423 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 502 (856)
.|+..+|+.++.+++..|..+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.+.
T Consensus 221 ~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------------- 286 (697)
T PLN03081 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-------------- 286 (697)
T ss_pred CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--------------
Confidence 888888888888888888888888888888888888888888888888888887777777776654
Q ss_pred HHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH
Q 003020 503 DGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHM 582 (856)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 582 (856)
.+++.+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++
T Consensus 287 -----------------------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~ 343 (697)
T PLN03081 287 -----------------------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343 (697)
T ss_pred -----------------------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence 457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 583 AKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMES 662 (856)
Q Consensus 583 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (856)
|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|. .||..+||.||.+|++.|+.++|+++|++|.+
T Consensus 344 a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999995 57999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Q 003020 663 AGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS-LEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTY 741 (856)
Q Consensus 663 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 741 (856)
.|+.||..||+.++.+|++.|++++|.++|+.|.+ .++.|+..+|++++++|++.|++++|.+++++|. ..|+..+|
T Consensus 420 ~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~ 497 (697)
T PLN03081 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMW 497 (697)
T ss_pred hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHH
Confidence 99999999999999999999999999999999986 7999999999999999999999999999998874 36889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003020 742 AMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD 807 (856)
Q Consensus 742 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 807 (856)
+.|+.+|...|+++.|..+++++.+.+|. +..+|..++++|++.|+|++|.+++++|.+.|+++.
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999988776 778999999999999999999999999999998643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-44 Score=438.70 Aligned_cols=722 Identities=13% Similarity=0.046 Sum_probs=621.5
Q ss_pred CCch-hhhhcccccccCCCCCCCCCccchhhhhhhhhccCCccccccccccccccccccCCccccccccccccccccccc
Q 003020 49 NSNS-ERVKRLSKVHNHSKFDKPNGVVHEHELKKQSFEQKPHREQSKNTWVDVRIGNERRTDVISAVCVNGEVQTKCSTK 127 (856)
Q Consensus 49 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~ 127 (856)
+++. ..+..++..+...|++..|..+.++++ ..+|.....|..++.++...|++++|...|++++...+..
T Consensus 155 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 226 (899)
T TIGR02917 155 DPRSLYAKLGLAQLALAENRFDEARALIDEVL--------TADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN 226 (899)
T ss_pred CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHH--------HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 3444 678888999999999999999999998 3345566689999999999999999999999987766543
Q ss_pred ccccCCchhHHHhhccccccHHHHhhHhhhhcC--hh------HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHH
Q 003020 128 WARYGGCIPSMLQALDTVKDLDEALKPWAENLS--NK------ERSIILKEQSSWERALEIFEWFKRQECHELNVIHYNI 199 (856)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~--~~------~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (856)
.. ....++..+...|++++|...+..... |. ..+.++...|++++|+..|+.+.+.. +.+...+..
T Consensus 227 ~~----~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~ 300 (899)
T TIGR02917 227 PA----VLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLL 300 (899)
T ss_pred HH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 22 123566677888999999998876322 11 23455667899999999999998765 233445556
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCC
Q 003020 200 MLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGE 279 (856)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 279 (856)
+...+...|++++|...|++++...+. +...+..++..+...|++++|...++++.+.. +.+...+..+...+.+.|+
T Consensus 301 ~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYAPN-SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCC
Confidence 677888999999999999999887544 67788899999999999999999999998775 3467788899999999999
Q ss_pred hhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 003020 280 FQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTF 359 (856)
Q Consensus 280 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 359 (856)
+++|..+|+++... .+.+...|..+...+...|++++|++.|+++.+.+.. .....
T Consensus 379 ~~~A~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~ 434 (899)
T TIGR02917 379 FEKAAEYLAKATEL-----------------------DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRAD 434 (899)
T ss_pred HHHHHHHHHHHHhc-----------------------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhH
Confidence 99999999987531 1235678889999999999999999999999886533 34456
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 003020 360 NTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIR 439 (856)
Q Consensus 360 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 439 (856)
..++..+.+.|++++|..+++++.+.. +++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...
T Consensus 435 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQE 512 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHC
Confidence 677888999999999999999998653 6678899999999999999999999999998764 35667788899999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHH
Q 003020 440 RMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFI 519 (856)
Q Consensus 440 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 519 (856)
|++++|.+.|+++.+..+ .+..++..+...+...|+.++|..+++++...+|.+...+..++..+...|++++|...++
T Consensus 513 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999987653 3677888999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh
Q 003020 520 CCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDC 599 (856)
Q Consensus 520 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 599 (856)
.+....+.+...|..++.++...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+.
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 669 (899)
T TIGR02917 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNT 669 (899)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCH
Confidence 9999888899999999999999999999999999998763 3466778889999999999999999999998864 4467
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 600 IPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLY 679 (856)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 679 (856)
.++..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+++...+ |+..++..++.++
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 746 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHH
Confidence 889999999999999999999999998875 4577888889999999999999999999998864 4557788899999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
.+.|++++|.+.++.+.+.. +.+...+..++..|...|++++|.+.|+++.+..|.++.++..++.++...|+ .+|+.
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 99999999999999998854 35677888999999999999999999999999999999999999999999999 88999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 760 IAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 760 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
+++++.+..|. ++.++..++.++...|++++|...++++++.+ ..+..++..+..++.+.|
T Consensus 825 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 825 YAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATG 885 (899)
T ss_pred HHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcC
Confidence 99999999887 78899999999999999999999999999965 337788999999999999
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.9e-44 Score=434.33 Aligned_cols=717 Identities=12% Similarity=0.033 Sum_probs=620.8
Q ss_pred hhhhcccccccCCCCCCCCCccchhhhhhhhhccCCccccccccccccccccccCCcccccccccccccccccccccccC
Q 003020 53 ERVKRLSKVHNHSKFDKPNGVVHEHELKKQSFEQKPHREQSKNTWVDVRIGNERRTDVISAVCVNGEVQTKCSTKWARYG 132 (856)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 132 (856)
..+..++..+...|+++.|...+++++ ..+|+....+..++..+...|++++|...+++++..++....
T Consensus 126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 194 (899)
T TIGR02917 126 ELLALRGLAYLGLGQLELAQKSYEQAL--------AIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVD--- 194 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---
Confidence 778888888899999999999999999 445566678999999999999999999999998777653322
Q ss_pred CchhHHHhhccccccHHHHhhHhhhhc--Chh------HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHH
Q 003020 133 GCIPSMLQALDTVKDLDEALKPWAENL--SNK------ERSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTL 204 (856)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~al~~~~~~~--~~~------~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 204 (856)
....+...+...|++++|+..|.+.+ +|. ..+.++...|++++|...++.+.+..+ .+...+......+
T Consensus 195 -~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~ 271 (899)
T TIGR02917 195 -ALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAP--NSPLAHYLKALVD 271 (899)
T ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCchHHHHHHHHH
Confidence 12245666788999999999998743 232 245567788999999999999988753 3444455556667
Q ss_pred HccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHH
Q 003020 205 GKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAE 284 (856)
Q Consensus 205 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 284 (856)
...|++++|...|+++.+.++. +...+..+...+...|++++|...|+++.+..+ .+...+..+...+.+.|++++|.
T Consensus 272 ~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 272 FQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHH
Confidence 7899999999999999987644 455667778889999999999999999998753 35667788889999999999999
Q ss_pred HHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 003020 285 EFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIH 364 (856)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 364 (856)
..++.+.. ..+.+...+..++..+.+.|++++|.+.|+++.+... .+...+..+..
T Consensus 350 ~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 405 (899)
T TIGR02917 350 ATLSPALG-----------------------LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGI 405 (899)
T ss_pred HHHHHHHh-----------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 99998753 1234678899999999999999999999999988643 35667888889
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 003020 365 IYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCE 444 (856)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 444 (856)
.+...|++++|...++++.+.. +........++..+.+.|++++|.++++++.... +++..+|..+...+...|++++
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHH
Confidence 9999999999999999998765 3345667778899999999999999999998754 4678899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 003020 445 AEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEG 524 (856)
Q Consensus 445 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 524 (856)
|.+.|+++++... .+...+..++..+...|++++|...|+++....|.+..++..++..+...|+.++|...|.++...
T Consensus 484 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 484 AREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999987643 356678889999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHH
Q 003020 525 KKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCA 604 (856)
Q Consensus 525 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 604 (856)
.+.+...+..++..+...|++++|..+++.+.+. .+.+..++..++.++...|++++|...++.+.+.. +.+...+..
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 8888999999999999999999999999999875 34577899999999999999999999999998864 446778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003020 605 VISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGY 684 (856)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 684 (856)
+..++.+.|++++|...|+++.+.. +.+..++..++..+...|++++|..+++.+.+.+ +++...+..++..+...|+
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCC
Confidence 9999999999999999999999864 4468899999999999999999999999998875 6778889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003020 685 LKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQM 764 (856)
Q Consensus 685 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 764 (856)
+++|.+.|+.+.+.. |+..++..++.++...|++++|.+.++++.+..|.+..++..++..|...|++++|++.|+++
T Consensus 719 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 719 YPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999999999998854 555677788999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC
Q 003020 765 RESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD-DFTFKSLGAVLMKCG 822 (856)
Q Consensus 765 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~G 822 (856)
++..|. ++.+++.++.++...|+ .+|+.+++++++. .|+ ..++..+..++...|
T Consensus 797 ~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 797 VKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence 999887 89999999999999999 8899999999985 454 456888999999999
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.2e-30 Score=311.13 Aligned_cols=620 Identities=12% Similarity=0.042 Sum_probs=466.7
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhh--------------
Q 003020 166 IILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINST-------------- 231 (856)
Q Consensus 166 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-------------- 231 (856)
.+....++.+.|.+.++++.... +.++.++..++..+.+.|+.++|...+++..+..+. +...
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCch
Confidence 34556789999999999998775 556777888899999999999999999999886543 3332
Q ss_pred --HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhh
Q 003020 232 --YGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKV 309 (856)
Q Consensus 232 --~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (856)
...++..+...|++++|++.|+++.+..++................|+.++|+..++++...
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~---------------- 176 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD---------------- 176 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh----------------
Confidence 23445578899999999999999987643322211111222233468999999999998642
Q ss_pred ccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------------CH---HhHHHHHHHHhcCC
Q 003020 310 ENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVP----------------TT---VTFNTMIHIYGNND 370 (856)
Q Consensus 310 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p----------------~~---~~~~~ll~~~~~~g 370 (856)
.+.+...+..+...+...|++++|++.|+++.+..... +. ..+...+..+-...
T Consensus 177 -------~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~ 249 (1157)
T PRK11447 177 -------YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGD 249 (1157)
T ss_pred -------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCch
Confidence 23356778899999999999999999999987642110 00 01111222222223
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 003020 371 QLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELIS 450 (856)
Q Consensus 371 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 450 (856)
..+.|...+.+.......|... .......+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|+
T Consensus 250 ~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 250 SVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445556665554332223322 2234567788999999999999998864 3478889999999999999999999999
Q ss_pred HHhcCCCCCCH-h------------hHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHH
Q 003020 451 EMDGGGLEIDE-Y------------TQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERA 517 (856)
Q Consensus 451 ~~~~~~~~p~~-~------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 517 (856)
+.++....... . ........+.+.|++++|+..|+++....|.+..++..++..+...|++++|++.
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~ 407 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERY 407 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99876543221 1 1123356678899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 003020 518 FICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAV--------PDKCSYNSLIQILAGADLPHMAKRYLRK 589 (856)
Q Consensus 518 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~A~~~~~~ 589 (856)
|+++....|.+...+..+...|. .+++++|+..++.+...... .....+..+...+...|++++|++.+++
T Consensus 408 y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~ 486 (1157)
T PRK11447 408 YQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ 486 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999988888888888888885 45789999988775432100 0122355667788899999999999999
Q ss_pred HHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003020 590 MQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA 669 (856)
Q Consensus 590 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 669 (856)
+++.. +.+...+..+...|.+.|++++|...++++++..+ .+...+..+...+...++.++|+..++.+......++.
T Consensus 487 Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~ 564 (1157)
T PRK11447 487 RLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNI 564 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhH
Confidence 99875 33566788899999999999999999999987643 35556656666677899999999999887543222222
Q ss_pred H---------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHH
Q 003020 670 V---------IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFT 740 (856)
Q Consensus 670 ~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 740 (856)
. .+..+...+...|++++|+++++. .+++...+..+...+.+.|++++|++.|+++.+..|.++.+
T Consensus 565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a 639 (1157)
T PRK11447 565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADA 639 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 1 123456778899999999999872 23455566788999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC---CHHHHHHHH
Q 003020 741 YAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAI--QP---DDFTFKSLG 815 (856)
Q Consensus 741 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p---~~~~~~~l~ 815 (856)
+..++.+|...|++++|++.++++.+..|. ++..+..++.++...|++++|.+++++++...- .| +...+..+.
T Consensus 640 ~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a 718 (1157)
T PRK11447 640 RLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAA 718 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHH
Confidence 999999999999999999999999988766 778888899999999999999999999987421 12 123566677
Q ss_pred HHHHHcC
Q 003020 816 AVLMKCG 822 (856)
Q Consensus 816 ~~~~~~G 822 (856)
..+...|
T Consensus 719 ~~~~~~G 725 (1157)
T PRK11447 719 RFEAQTG 725 (1157)
T ss_pred HHHHHcC
Confidence 8888888
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.6e-29 Score=306.89 Aligned_cols=622 Identities=12% Similarity=0.044 Sum_probs=447.0
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCHH--------------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChh-h
Q 003020 167 ILKEQSSWERALEIFEWFKRQECHELNVI--------------HYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINS-T 231 (856)
Q Consensus 167 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~--------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~ 231 (856)
++...|+.++|.+.++...+..+..+... ....+...+.+.|++++|...|+++...++. +.. .
T Consensus 71 ~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la 149 (1157)
T PRK11447 71 LLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLA 149 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHH
Confidence 34456777777777777666542222211 1233345677788888888888887765433 322 1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhcc
Q 003020 232 YGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVEN 311 (856)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (856)
...+.......|+.++|+..|+++.+..+. +...+..+...+...|+.++|+..++++...... ....+....+.
T Consensus 150 ~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~----~~~aa~~~~~~ 224 (1157)
T PRK11447 150 VEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG----RDAAAQLWYGQ 224 (1157)
T ss_pred HHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc----hHHHHHHHHHH
Confidence 112222233458888888888888877433 5556777777888888888888888876431100 00000000000
Q ss_pred CCc-CCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 003020 312 GSH-VNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPD 390 (856)
Q Consensus 312 ~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 390 (856)
... .........+...+..+-.....+.|...+.++......|+... ......+...|++++|...|++.++.. |.+
T Consensus 225 l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~ 302 (1157)
T PRK11447 225 IKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKD 302 (1157)
T ss_pred HhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 000 01111223334444433333445667777777655433343322 234566778899999999999999765 557
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHhH------------HHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 003020 391 TRTYNILIFLHAKNDKISMASRYFWKMKEANLEP-DIVSY------------RTLLYAYSIRRMVCEAEELISEMDGGGL 457 (856)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~------------~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 457 (856)
..++..+..++.+.|++++|+..|++..+..... ....| ......+.+.|++++|+..|+++++...
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P 382 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN 382 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 8889999999999999999999999988754321 11112 1224567789999999999999998753
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCC---------c
Q 003020 458 EIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKL---------T 528 (856)
Q Consensus 458 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~ 528 (856)
.+...+..+..++...|++++|+..|+++....|.+..++..++..|. .++.++|+..++.+....+. .
T Consensus 383 -~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 383 -TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 356678888999999999999999999999999998888888888875 45789999888765433211 1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 003020 529 VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISS 608 (856)
Q Consensus 529 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 608 (856)
...+..+...+...|++++|++.|++.++... -+...+..+...+.+.|++++|...++++++.. +.+...+..+...
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~ 538 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLY 538 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 23456678888999999999999999988632 256678888999999999999999999998754 3355555556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 609 YMKLGQLEMAEEVYKDMIRFNVEPDVV---------VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLY 679 (856)
Q Consensus 609 ~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 679 (856)
+...++.++|+..++.+......++.. .+..+...+...|+.++|..+++. .+++...+..+...+
T Consensus 539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWA 613 (1157)
T ss_pred HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHH
Confidence 778899999999998875432222221 223456778899999999999872 366777888899999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
.+.|++++|++.|+++.+..+ .+...+..++.++...|++++|++.++.+.+..|.+..++..++.++...|++++|.+
T Consensus 614 ~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999998542 4577888999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC
Q 003020 760 IAKQMRESGLISD-----LLSYNNVLGLYAVDGRFKDVIGTFKDMVN-AAIQP 806 (856)
Q Consensus 760 ~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p 806 (856)
+++++++..+... ...+..++..+...|++++|+..|++.+. .|+.|
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 9999998765422 25677789999999999999999999875 44543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.98 E-value=8.8e-26 Score=260.66 Aligned_cols=598 Identities=10% Similarity=-0.008 Sum_probs=439.9
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCH
Q 003020 166 IILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLK 245 (856)
Q Consensus 166 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 245 (856)
..+...|++++|+..|+.+.+.. |.+..++..+...|.+.|++++|+..+++.++.++. |...+..+ ..+ +++
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~~~~~L-a~i---~~~ 124 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG-DARLERSL-AAI---PVE 124 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHHHHH-HHh---ccC
Confidence 33455699999999999999886 555788899999999999999999999999987553 55455544 333 899
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHH--------HHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCC
Q 003020 246 EEAVCWLERMNEGGMEPDEVTMGIVVQM--------YKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNG 317 (856)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (856)
++|..+|+++.+..+. +..++..+... |.+.++..+++. .+.. ..
T Consensus 125 ~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~------------------------~~ 177 (987)
T PRK09782 125 VKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATF------------------------AA 177 (987)
T ss_pred hhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--Hhhh------------------------CC
Confidence 9999999999998543 34455555554 666544444544 1111 12
Q ss_pred CcCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc-CCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003020 318 SLSS-YTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGN-NDQLAEVDSLIKKMEELHCPPDTRTYN 395 (856)
Q Consensus 318 ~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~ 395 (856)
.++. +..-.+...|.+.|++++|++++.++.+.+.. +..-...|..+|.. .++ +++..+++... ..+...+.
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~l----k~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGI----FTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhc----ccCHHHHH
Confidence 2233 34455589999999999999999999998644 45556777778877 466 88888865422 35888999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCC-CCHHhHHHH------------------------------HHHHHhcCCHHH
Q 003020 396 ILIFLHAKNDKISMASRYFWKMKEANLE-PDIVSYRTL------------------------------LYAYSIRRMVCE 444 (856)
Q Consensus 396 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l------------------------------l~~~~~~g~~~~ 444 (856)
.+...|.+.|+.++|.++++++...... |...+|..+ +..+.++++++.
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999987643221 333333222 233445555554
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhc
Q 003020 445 AEELISEMDGGGLEIDEYTQSALTRMYI-EAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQE 523 (856)
Q Consensus 445 A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 523 (856)
++++. .+.|..... .+-.++. ..+...++....+.+....|.+.+....+.-...+.|+.++|.++|+....
T Consensus 332 ~~~~~------~~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~ 404 (987)
T PRK09782 332 AQKLL------ATLPANEML-EERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYP 404 (987)
T ss_pred HHHHh------cCCCcchHH-HHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcC
Confidence 44331 123333321 1112222 336777777778888878788889999999999999999999999998877
Q ss_pred CC---CCcHHHHHHHHHHHHccCC---HHHHHHH----------------------HHHHHhC-CC-CC--CHHHHHHHH
Q 003020 524 GK---KLTVLVFNVMVKAYGMGRN---YDKACNL----------------------FDSMTSH-GA-VP--DKCSYNSLI 571 (856)
Q Consensus 524 ~~---~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m~~~-~~-~p--~~~~~~~ll 571 (856)
.. ..+......++..|...+. ..++..+ ++..... +. ++ +...+..+.
T Consensus 405 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG 484 (987)
T PRK09782 405 FQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLA 484 (987)
T ss_pred CCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHH
Confidence 42 2345566688888887766 3334333 1111111 11 33 566777777
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003020 572 QILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVK 651 (856)
Q Consensus 572 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 651 (856)
.++.. +++++|...+.+..... |+......+...+...|++++|...|+++... +|+...+..+..++.+.|+.+
T Consensus 485 ~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~ 559 (987)
T PRK09782 485 KCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGA 559 (987)
T ss_pred HHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHH
Confidence 77776 88999999888877754 55544444555667899999999999998764 445556677788889999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 652 QAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMK 731 (856)
Q Consensus 652 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 731 (856)
+|...+++..+.+ +++...+..+.......|++++|+..|++..+.. |+...+..+..++.+.|++++|+..++++.
T Consensus 560 eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 560 ARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998875 4444555555555566799999999999998844 677888999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-H
Q 003020 732 KKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF-T 810 (856)
Q Consensus 732 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~ 810 (856)
...|.++..+..++.++...|++++|+..++++++..|. ++..+.+++.++...|++++|+..+++.++ +.|+.. .
T Consensus 637 ~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i 713 (987)
T PRK09782 637 ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALI 713 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchh
Confidence 999999999999999999999999999999999999987 899999999999999999999999999998 467653 3
Q ss_pred HHHHHHHHHHc
Q 003020 811 FKSLGAVLMKC 821 (856)
Q Consensus 811 ~~~l~~~~~~~ 821 (856)
.......+.+.
T Consensus 714 ~~~~g~~~~~~ 724 (987)
T PRK09782 714 TPLTPEQNQQR 724 (987)
T ss_pred hhhhhHHHHHH
Confidence 33333333333
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=2.9e-25 Score=256.39 Aligned_cols=661 Identities=9% Similarity=-0.037 Sum_probs=441.9
Q ss_pred cccccccccCCcccccccccccccccccccccccCCchhHHHhhccccccHHHHhhHhhhh--cChh--HHHHHHHhcCC
Q 003020 98 VDVRIGNERRTDVISAVCVNGEVQTKCSTKWARYGGCIPSMLQALDTVKDLDEALKPWAEN--LSNK--ERSIILKEQSS 173 (856)
Q Consensus 98 ~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~--~~~~--~~~~~l~~~~~ 173 (856)
+..+..+...|++++|...|++++..+|.... ....+++.+...|+.++|+....+. .+|. .....+...++
T Consensus 48 f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~----~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~ 123 (987)
T PRK09782 48 LDKALKAQKNNDEATAIREFEYIHQQVPDNIP----LTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPV 123 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhcc
Confidence 55566666779999999999998888866533 2257788888899999999988873 3333 22333444588
Q ss_pred HHHHHHHHHHhHHcCCCCCCHHHHHHHHHH--------HHccCCHHHHHHHHHHHHhCCCCcChhhHHHH-HHHHHcCCC
Q 003020 174 WERALEIFEWFKRQECHELNVIHYNIMLRT--------LGKARKWSYVQSLWDEMSVKGIVPINSTYGTL-IDVCSKGGL 244 (856)
Q Consensus 174 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~ 244 (856)
+++|..+|+.+.... |.+..++..+... |.+. ++|.+.++ .....+.|+..+.... ...|.+.|+
T Consensus 124 ~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~d 197 (987)
T PRK09782 124 EVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQ 197 (987)
T ss_pred ChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhC
Confidence 899999999888775 3444445444444 5444 55555555 3333344445544444 889999999
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHh-cCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhH
Q 003020 245 KEEAVCWLERMNEGGMEPDEVTMGIVVQMYKK-AGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYT 323 (856)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (856)
+++|+..+.++.+.++. +......+..+|.. .++ +++..+++.. ...+...
T Consensus 198 w~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~--------------------------lk~d~~l 249 (987)
T PRK09782 198 WSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG--------------------------IFTDPQS 249 (987)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh--------------------------cccCHHH
Confidence 99999999999988644 45556666677777 466 7777775421 1236788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHhcCCCHH-HHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 003020 324 YNTLIDTYGKAGQLKEASETFAQMLREGIV-PTTVTFNTMIHIYGNNDQLA-EVDSLIKKMEELHCPPD-TRTYNILIFL 400 (856)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~ll~~~~~~g~~~-~A~~~~~~~~~~~~~~~-~~~~~~li~~ 400 (856)
+..++..|.+.|+.++|..+++++...... |...++..++. +.+... .|..-|.+ +. .++ ....-.++..
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~---r~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~ 322 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLS---KYSANPVQALANYTV--QF--ADNRQYVVGATLPV 322 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHH---hccCchhhhccchhh--hh--HHHHHHHHHHHHHH
Confidence 889999999999999999999987654322 44444433322 222221 11111111 00 001 1122223455
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHH
Q 003020 401 HAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKS 480 (856)
Q Consensus 401 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 480 (856)
+.++++++.|.++.. +.|.......-..+....+...++.+....|.+.. +-+......+.......|+.++|
T Consensus 323 ~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a 395 (987)
T PRK09782 323 LLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREA 395 (987)
T ss_pred HHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHH
Confidence 555555554443311 11222211111111112244444444444444331 11333444444444455555555
Q ss_pred HHHHHHHHhcCC---CCchhhHHHHHHHhhcCC-------------------------H---HHHHHHHHHHhcCCCC--
Q 003020 481 WLWFRRFHLAGD---MSSEGYSANIDGYGERGH-------------------------V---LEAERAFICCQEGKKL-- 527 (856)
Q Consensus 481 ~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~-------------------------~---~~A~~~~~~~~~~~~~-- 527 (856)
..+|++.....+ .+......++..|...+. . ..+...+.......|.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~ 475 (987)
T PRK09782 396 ADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSY 475 (987)
T ss_pred HHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCC
Confidence 555555543211 111122234444443333 2 2233444445555566
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 003020 528 TVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVIS 607 (856)
Q Consensus 528 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 607 (856)
+...|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...++++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 88899999999987 8999999988887765 366555445556667899999999999998664 345556677788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 608 SYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKE 687 (856)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 687 (856)
.+.+.|++++|...|++.++.. +.+...+..+.......|++++|...+++..+.. |+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 8999999999999999999865 2233444444445556799999999999999864 578899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 688 AQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 688 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
|+..|++..+..+ .+...++.+..++...|++++|++.++++.+..|.++..+..++.++...|++++|+..++++++.
T Consensus 628 A~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 628 AVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999998542 356678888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 768 GLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 768 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
.|. +..+....+....+..+++.|.+-+++... +.|+..........+...+
T Consensus 707 ~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~a~~~~g~~~~~~~ 758 (987)
T PRK09782 707 IDN-QALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSSIGLRSGAMSTANN 758 (987)
T ss_pred CCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccchhccccchHhhhcc
Confidence 887 778888999999999999999999988776 4666665555555555444
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.2e-25 Score=235.99 Aligned_cols=682 Identities=12% Similarity=0.069 Sum_probs=484.9
Q ss_pred cccccccccccCCcccccccccccccccccccccccCCchhHHHhhccccccH--HHHhhHhhhhcChhHHHHHHHhcCC
Q 003020 96 TWVDVRIGNERRTDVISAVCVNGEVQTKCSTKWARYGGCIPSMLQALDTVKDL--DEALKPWAENLSNKERSIILKEQSS 173 (856)
Q Consensus 96 ~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~al~~~~~~~~~~~~~~~l~~~~~ 173 (856)
+|...+.-|.++|+.++.+..++..+-.+. ..|.+.......++...+-+ ..|...-.+ ....--
T Consensus 43 ~wi~~AleYy~~gk~eefi~iLE~g~~~~~---~~y~d~~~~~~~a~~~laay~s~~a~kek~~----------~~k~e~ 109 (1018)
T KOG2002|consen 43 AWIEIALEYYKQGKTEEFIKILESGLIDAN---EEYADVKSDQMKALDILAAYYSQLAMKEKKK----------DEKDEL 109 (1018)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhccc---chhcchHHHHHHHHHHHHHHHHHHHHHHHhc----------chhHHH
Confidence 799999999999999999999987653331 22222222222222221111 111111000 000112
Q ss_pred HHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHH
Q 003020 174 WERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLE 253 (856)
Q Consensus 174 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 253 (856)
+..|...|+.+.+.....+...++....-....-.+++.|...|..+++..+. |+..+.--.......|+|..|+.+|.
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk 188 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYK 188 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHH
Confidence 45688888877766544444444444433333333468999999988887543 76666666666778899999999999
Q ss_pred HHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHh
Q 003020 254 RMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGK 333 (856)
Q Consensus 254 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (856)
+++...+..-+.....+...+.+.|+.+.|...|+++.+. ++ .++.++-.|.-.-..
T Consensus 189 ~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL----------------------dp-~~v~alv~L~~~~l~ 245 (1018)
T KOG2002|consen 189 KALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL----------------------DP-TCVSALVALGEVDLN 245 (1018)
T ss_pred HHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc----------------------Ch-hhHHHHHHHHHHHHH
Confidence 9887643322223344456777999999999999988642 11 233333333333222
Q ss_pred c---CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCChH
Q 003020 334 A---GQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCP--PDTRTYNILIFLHAKNDKIS 408 (856)
Q Consensus 334 ~---g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 408 (856)
. ..+..++.++...-.... -|+...+.|.+.|.-.|++..+..+...+...... --...|--+..+|-..|+++
T Consensus 246 ~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 246 FNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred ccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHH
Confidence 2 334566677766655433 36778889999999999999999999888854311 12335777889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcC----ChHHHHHHH
Q 003020 409 MASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAG----MLEKSWLWF 484 (856)
Q Consensus 409 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~ 484 (856)
.|..+|.+........-+..+..+...+...|+.+.+...|+...+.. +.+..|...++..|...+ ..+.|..++
T Consensus 325 kA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 325 KAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 999999988876422224456677888999999999999999998763 336678888888888875 678888899
Q ss_pred HHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHh-----cCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-
Q 003020 485 RRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQ-----EGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSH- 558 (856)
Q Consensus 485 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 558 (856)
.+.....+.+.++|..++..+....-+.. +..|..+. ...+..+...|.++..+...|++++|...|+.....
T Consensus 404 ~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 404 GKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 99988889999999999988877665555 76666554 233577899999999999999999999999988765
Q ss_pred --CCCCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003020 559 --GAVPD------KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNV 630 (856)
Q Consensus 559 --~~~p~------~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 630 (856)
...++ ..+-..+...+-..++.+.|.++|..+++.. +.-+..|.-++.+....+...+|...++..+..+
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d- 560 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID- 560 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-
Confidence 12222 2244456667777889999999999998863 2223335555444444578889999999998764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHh
Q 003020 631 EPDVVVYGVLINAFADVGNVKQAQSYFDAMESAG-LPPNAVIYNSLIKLYTK------------VGYLKEAQETYKLLRS 697 (856)
Q Consensus 631 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~ 697 (856)
..++..+..+...+.+...+..|..-|+.+.+.- ..+|+.+.-+|++.|.. .+..++|+++|+++++
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 4577778878888888888888888777775532 23677777788886653 3567889999999888
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHH
Q 003020 698 LEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES-GLISDLLSY 776 (856)
Q Consensus 698 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~ 776 (856)
..+ -+...-|-++-++...|++.+|..+|.+..+....++.+|..++++|..+|+|..|+++|+...+. ....++...
T Consensus 641 ~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl 719 (1018)
T KOG2002|consen 641 NDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL 719 (1018)
T ss_pred cCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 543 466777788888999999999999999999887777788999999999999999999999998865 455577889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcC
Q 003020 777 NNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFT-FKSLGAVLMKCG 822 (856)
Q Consensus 777 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~G 822 (856)
..|++++.+.|++.+|.+.....+.. .|...+ .-.+.-++.+.+
T Consensus 720 ~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 720 HYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHHH
Confidence 99999999999999999999988874 555443 334444455555
No 14
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.6e-26 Score=227.44 Aligned_cols=434 Identities=13% Similarity=0.170 Sum_probs=361.8
Q ss_pred CCCCCCCCCccchhhhhhhhhccCCccccccccccccccccccCCccccccccccc---ccccccccccccCCchhHHHh
Q 003020 64 HSKFDKPNGVVHEHELKKQSFEQKPHREQSKNTWVDVRIGNERRTDVISAVCVNGE---VQTKCSTKWARYGGCIPSMLQ 140 (856)
Q Consensus 64 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 140 (856)
+++++.+|+|+++++| .++.++.++|.+++.+.+++..+++||++||+ ++|+..+.|+.|
T Consensus 85 sq~e~~RARSv~ERAL--------dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY--------- 147 (677)
T KOG1915|consen 85 SQKEIQRARSVFERAL--------DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY--------- 147 (677)
T ss_pred hHHHHHHHHHHHHHHH--------hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH---------
Confidence 3899999999999999 88899999999999999999999999999999 688888999988
Q ss_pred hccccccHHHHhhHhhhhcChhHHHHHHHhcCCHHHHHHHHH-HhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003020 141 ALDTVKDLDEALKPWAENLSNKERSIILKEQSSWERALEIFE-WFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDE 219 (856)
Q Consensus 141 ~~~~~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 219 (856)
-.++|.|++ ...|+++|+ ||. +.|+..+|++.|+.-.+.+.++.|+.+|++
T Consensus 148 -----~ymEE~LgN-------------------i~gaRqiferW~~----w~P~eqaW~sfI~fElRykeieraR~IYer 199 (677)
T KOG1915|consen 148 -----IYMEEMLGN-------------------IAGARQIFERWME----WEPDEQAWLSFIKFELRYKEIERARSIYER 199 (677)
T ss_pred -----HHHHHHhcc-------------------cHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566776554 445999998 776 899999999999999999999999999999
Q ss_pred HHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC-CC-CccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcccc
Q 003020 220 MSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEG-GM-EPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLR 297 (856)
Q Consensus 220 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 297 (856)
.+- +.|++.+|....+.-.++|+...|..+|+.+++. |- .-+...+.++...-.++..++.|..+|+-..+
T Consensus 200 fV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld----- 272 (677)
T KOG1915|consen 200 FVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD----- 272 (677)
T ss_pred Hhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 886 5689999999999999999999999999999875 21 12345677777777789999999999998764
Q ss_pred CCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHH--------HHHHHHCCCCCCHHhHHHHHHHHhcC
Q 003020 298 HGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASET--------FAQMLREGIVPTTVTFNTMIHIYGNN 369 (856)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~g~~p~~~~~~~ll~~~~~~ 369 (856)
+.+.......|..+...--+.|+.....+. |+.+++.+. -|..+|...+......
T Consensus 273 ----------------~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~ 335 (677)
T KOG1915|consen 273 ----------------HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESV 335 (677)
T ss_pred ----------------hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhc
Confidence 222223356777777777777776544433 566666543 4788999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHH--------ccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH--
Q 003020 370 DQLAEVDSLIKKMEELHCPPDT--RTYNILIFLHA--------KNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYS-- 437 (856)
Q Consensus 370 g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~--------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~-- 437 (856)
|+.+...++|++++ .++||-. ..|...|..+. ...+++.+.++|+..++. ++...+||..+...|+
T Consensus 336 g~~~~Ire~yErAI-anvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~f 413 (677)
T KOG1915|consen 336 GDKDRIRETYERAI-ANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQF 413 (677)
T ss_pred CCHHHHHHHHHHHH-ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHH
Confidence 99999999999999 5667632 34444443332 468899999999999984 6677888888877776
Q ss_pred --hcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHH
Q 003020 438 --IRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAE 515 (856)
Q Consensus 438 --~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 515 (856)
++.+...|.+++...+ |..|-..++...+..-.+.+++|.+..+|++.+.-+|.+..+|...+..-...|+.+.|.
T Consensus 414 eIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 414 EIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHH
Confidence 6789999999999887 678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 516 RAFICCQEGKKLT--VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQ 572 (856)
Q Consensus 516 ~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 572 (856)
.+|+.+...+..+ ...|.+.|+.-...|.++.|..+|+++++.. +...+|-++..
T Consensus 492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHH
Confidence 9999999877554 6789999999999999999999999999862 23334544443
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=9.3e-26 Score=228.93 Aligned_cols=455 Identities=16% Similarity=0.118 Sum_probs=379.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003020 324 YNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAK 403 (856)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 403 (856)
-..|..-..+.|++.+|++.-...-+.+.. +......+-..+....+++....--....+.. +.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 455677778999999999988776655422 33344445566667677776655544444333 4567899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHh-hHHHHHHHHHHcCChHHHHH
Q 003020 404 NDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEY-TQSALTRMYIEAGMLEKSWL 482 (856)
Q Consensus 404 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~ 482 (856)
.|++++|+.+|+.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.. ..+.+.......|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999999865 246789999999999999999999999999875 45544 45566777778999999999
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 003020 483 WFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVP 562 (856)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 562 (856)
.|.+.....|.-..+|..++-.+..+|+...|+..|+++....|.-..+|..++.+|...+.+++|+..|.+.... +|
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998764 45
Q ss_pred C-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003020 563 D-KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLI 641 (856)
Q Consensus 563 ~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 641 (856)
+ ...+..+...|..+|..|.|+..+++.++.... =...|+.|..++-..|+..+|+..|++.+... +.-..+.+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 4 566778888889999999999999999886422 24679999999999999999999999999864 23566888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCH
Q 003020 642 NAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDV-YTSNCMIDLYSERSMV 720 (856)
Q Consensus 642 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 720 (856)
..|...|++++|..+|....+.. +--....+.|...|-++|++++|+..|++.++ ++|+. ..|+.++..|-..|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999998753 33457789999999999999999999999987 66774 4789999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 721 RQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKD 791 (856)
Q Consensus 721 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 791 (856)
+.|+..+.+++..+|.-..+.+.|+..|...|+..+|+.-|+++++..|. .+..|.+++.++---.+|.+
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHHHHHHhcccc
Confidence 99999999999988888889999999999999999999999999998876 66778777776655444444
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7e-23 Score=219.79 Aligned_cols=625 Identities=14% Similarity=0.075 Sum_probs=463.4
Q ss_pred HHHhcCCHHHHHHHHHHhHHcC-----CCCCCH-HHHHHHHHHHHcc-----------CCHHHHHHHHHHHHhCCCCcCh
Q 003020 167 ILKEQSSWERALEIFEWFKRQE-----CHELNV-IHYNIMLRTLGKA-----------RKWSYVQSLWDEMSVKGIVPIN 229 (856)
Q Consensus 167 ~l~~~~~~~~A~~~~~~~~~~~-----~~~~~~-~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~ 229 (856)
-|..+|+.++.+.+.+...... ..+.+. ..++.+...+... ..+..|..+|+..-..... ..
T Consensus 50 eYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m~-~~ 128 (1018)
T KOG2002|consen 50 EYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDMY-ED 128 (1018)
T ss_pred HHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhcc-Cc
Confidence 3556788888888887665111 011111 2233333333222 1234555566554443222 22
Q ss_pred hhHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhh
Q 003020 230 STYGTLIDVCSKGGL--KEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIG 307 (856)
Q Consensus 230 ~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 307 (856)
..+..-...|...|. ++.|...|...++.. +++...+-.-.......+++-.|+.+|..+...
T Consensus 129 ~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~i-------------- 193 (1018)
T KOG2002|consen 129 SHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRI-------------- 193 (1018)
T ss_pred chhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhc--------------
Confidence 222222333444444 589999999998874 234433333333344678999999999997532
Q ss_pred hhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc---CCCHHHHHHHHHHHHh
Q 003020 308 KVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGN---NDQLAEVDSLIKKMEE 384 (856)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~ 384 (856)
.+...+|+. -.+..++.+.|+.+.|+..|.+.++.++ -++.++..|...-.. ...+..+..++...-.
T Consensus 194 ------np~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~ 264 (1018)
T KOG2002|consen 194 ------NPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYK 264 (1018)
T ss_pred ------CcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh
Confidence 233333332 2345778899999999999999998643 133444444333222 3345677777777765
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHh
Q 003020 385 LHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLE--PDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEY 462 (856)
Q Consensus 385 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 462 (856)
.+ +.|+.+.+.|...|.-.|+++.++.+...+...... --..+|..+.++|-..|++++|...|.+..+.....-..
T Consensus 265 ~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l 343 (1018)
T KOG2002|consen 265 EN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL 343 (1018)
T ss_pred hc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc
Confidence 54 568889999999999999999999999988864321 124568889999999999999999999998765433345
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcC----CHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 003020 463 TQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERG----HVLEAERAFICCQEGKKLTVLVFNVMVKA 538 (856)
Q Consensus 463 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 538 (856)
.+..++++|...|+++.+...|+++....|...++...++..|...+ ..+.|..+..+..+..+.+...|-.+...
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 66788999999999999999999999999999999999999998886 67888888889988889999999999999
Q ss_pred HHccCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc---CCCCCh------HhHHHH
Q 003020 539 YGMGRNYDKACNLFDSMT----SHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEA---GLVSDC------IPYCAV 605 (856)
Q Consensus 539 ~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~l 605 (856)
+....-+.. +..|.... ..+-.+.+...|.+.......|.++.|...|...... ...+|. .+--.+
T Consensus 424 ~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 877665554 77766544 4455678889999999999999999999999998765 122222 234445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003020 606 ISSYMKLGQLEMAEEVYKDMIRFNVEPD-VVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGY 684 (856)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 684 (856)
...+...++++.|.++|..+++.. |. +..|-.++......+...+|...++...+.+ ..++..++.++..+.+...
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 667777889999999999999863 44 3355555534445678899999999998865 6677888888999999999
Q ss_pred HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 003020 685 LKEAQETYKLLRSL-EASPDVYTSNCMIDLYSE------------RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN 751 (856)
Q Consensus 685 ~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 751 (856)
+..|.+-|....+. ...+|.++...|+..|.+ .+.+++|+++|.++++..|.|..+-+.++.+++..
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc
Confidence 99999988777662 223688877778876642 34578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcC
Q 003020 752 GRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQP-DDFTFKSLGAVLMKCG 822 (856)
Q Consensus 752 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~G 822 (856)
|++.+|..+|.++.+.... ...+|.+++.+|..+|+|..|+++|+...+.-.+. +......|..++.+.|
T Consensus 660 g~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred cCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 9999999999999998664 67899999999999999999999999988864444 4556999999999999
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=9.3e-26 Score=228.93 Aligned_cols=447 Identities=15% Similarity=0.140 Sum_probs=381.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 003020 359 FNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSI 438 (856)
Q Consensus 359 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 438 (856)
...|..-..+.|++.+|++.-...-..+ +.+....-.+-..+.+..+++.....-....+. .+.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 4556666678899999998877665443 223333333346666766776655544443333 23467899999999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHH
Q 003020 439 RRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAF 518 (856)
Q Consensus 439 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 518 (856)
.|++++|+.+|+.+++...+ ....|..+..++...|+.+.|...|...+..+|....+...++..+...|+.++|...|
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999999986433 56789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 003020 519 ICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPD-KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVS 597 (856)
Q Consensus 519 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 597 (856)
.++.+..+--..+|..+...+..+|+...|++.|++..+. .|+ ...|-.|...|...+.++.|...+.++.... +.
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 9999988888999999999999999999999999999875 555 4679999999999999999999999988754 23
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003020 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPD-VVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLI 676 (856)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 676 (856)
...++..+...|..+|..+-|+..|++.++. .|+ ...|+.|..++-..|++.+|..+|++.+... +......+.|+
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLg 361 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLG 361 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 4566888888999999999999999999986 455 5699999999999999999999999998864 55668899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFE 755 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 755 (856)
..|...|.+++|..+|....+ +.|. ....+.|...|.++|++++|+.-++++++..|.-..+|+.++..|...|+.+
T Consensus 362 ni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999999988 4465 4578899999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Q 003020 756 EATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF-TFKSLGAVLM 819 (856)
Q Consensus 756 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~ 819 (856)
.|++.|.+++..+|. -...+++|+.+|-..|+..+|++-|++.++ ++||.. .|..++.++.
T Consensus 440 ~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 999999999998876 678999999999999999999999999998 688854 3555555543
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=1.8e-20 Score=214.13 Aligned_cols=435 Identities=13% Similarity=0.025 Sum_probs=234.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003020 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLH 401 (856)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 401 (856)
..+...+..+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|+..+...++.+ +.+..+|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34556677777777777777777777653 4566677777777777777777777777777654 44556677777777
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHH
Q 003020 402 AKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSW 481 (856)
Q Consensus 402 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 481 (856)
...|++++|+..|......+. .+......++..+.. ..+.......++.... +......+.. +......+...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcch
Confidence 777777777777765544321 111111111111111 1222222222222111 1111111111 11111111111
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-C
Q 003020 482 LWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHG-A 560 (856)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 560 (856)
.-+.......+.....+..++..+. -....+++++|++.|++..+.+ .
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------------e~~~~~~y~~A~~~~~~al~~~~~ 326 (615)
T TIGR00990 278 AGLEDSNELDEETGNGQLQLGLKSP-------------------------------ESKADESYEEAARAFEKALDLGKL 326 (615)
T ss_pred hhhhcccccccccccchHHHHHHHH-------------------------------HhhhhhhHHHHHHHHHHHHhcCCC
Confidence 1111111111111111111110000 0022345666666666666543 1
Q ss_pred CC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003020 561 VP-DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGV 639 (856)
Q Consensus 561 ~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.| ....+..+...+...|++++|+..+++.++.. +.....|..+...+...|++++|+..|+++++.. +.+...|..
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 404 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYH 404 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 22 23445555556666666666666666666543 2234456666666666677777777777666653 234556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003020 640 LINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSM 719 (856)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 719 (856)
+...+...|++++|+..|++.++.. |.+...+..++.++.+.|++++|+..|++..+.. +.+...++.++.++...|+
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccC
Confidence 6666666777777777777766653 4455566666666667777777777776666532 1234556666666677777
Q ss_pred HHHHHHHHHHHHhCCCCCHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 720 VRQAEEIFEIMKKKGDANEFTY-------AMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 792 (856)
+++|++.|+++....|.+...+ ...+..+...|++++|+++++++++.+|. +...+..++.++.+.|++++|
T Consensus 483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 7777777777666554322111 11122223356777777777777776655 555667777777777777777
Q ss_pred HHHHHHHHHc
Q 003020 793 IGTFKDMVNA 802 (856)
Q Consensus 793 ~~~~~~~~~~ 802 (856)
+..|++..+.
T Consensus 562 i~~~e~A~~l 571 (615)
T TIGR00990 562 LKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHH
Confidence 7777776663
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=6e-20 Score=209.87 Aligned_cols=427 Identities=13% Similarity=0.038 Sum_probs=275.0
Q ss_pred ccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHH
Q 003020 296 LRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEV 375 (856)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A 375 (856)
....++...++..++...... |+...|..+..+|.+.|++++|++.+++.++.+. .+...|..+..++...|++++|
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGKYADA 213 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 344566788888888766544 4678899999999999999999999999998642 2566899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 003020 376 DSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGG 455 (856)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 455 (856)
..-|..+...+.. +......++..... ..+........+.. +++..++..+.. |........+..-+....+.
T Consensus 214 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 214 LLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred HHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhccccc
Confidence 9998877654322 22222222222211 22333333333332 233333333332 22222222222222222111
Q ss_pred CCCCCH-hhHHHHHHHH---HHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHH
Q 003020 456 GLEIDE-YTQSALTRMY---IEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLV 531 (856)
Q Consensus 456 ~~~p~~-~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 531 (856)
.+.. ..+..+...+ ...+.+++|...|++....+. ..+.....
T Consensus 287 --~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-------------------------------~~~~~a~a 333 (615)
T TIGR00990 287 --DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-------------------------------LGEKEAIA 333 (615)
T ss_pred --ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC-------------------------------CChhhHHH
Confidence 1111 1111111111 112455555555555543221 01223445
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 003020 532 FNVMVKAYGMGRNYDKACNLFDSMTSHGAVP-DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYM 610 (856)
Q Consensus 532 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 610 (856)
|+.++..+...|++++|+..|++.++. .| ...+|..+...+...|++++|...++++++.. +.+..++..+...+.
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHF 410 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 555666666666666666666666554 23 24455566666666666666666666666543 335667777788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003020 611 KLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQE 690 (856)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 690 (856)
..|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|++.++.. |.+...++.++.++...|++++|++
T Consensus 411 ~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHH
Confidence 8888888888888888764 3356677788888888999999999999888753 5567888888999999999999999
Q ss_pred HHHHHHhCCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003020 691 TYKLLRSLEASPDVY------TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQM 764 (856)
Q Consensus 691 ~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 764 (856)
.|++..+.....+.. .++..+..+...|++++|.++++++....|.+..++..++.++...|++++|++.|+++
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999888743221111 12222233445699999999999999988888889999999999999999999999999
Q ss_pred HHcCCC
Q 003020 765 RESGLI 770 (856)
Q Consensus 765 ~~~~~~ 770 (856)
.+....
T Consensus 569 ~~l~~~ 574 (615)
T TIGR00990 569 AELART 574 (615)
T ss_pred HHHhcc
Confidence 987544
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=2.3e-19 Score=208.60 Aligned_cols=425 Identities=11% Similarity=-0.016 Sum_probs=265.5
Q ss_pred CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 003020 355 TTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLY 434 (856)
Q Consensus 355 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 434 (856)
+.......+.+....|+.++|++++.+..... +.+...+..+...+.+.|++++|.++|++.++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34444455555566666666666666665422 3444456666666666666666666666665542 233444555555
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHH
Q 003020 435 AYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEA 514 (856)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 514 (856)
.+...|++++|+..++++++..+. +.. +..+..++...|+.++|+..++++....|.+...+..++..+...+..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 666666666666666666554221 233 555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----cCCCh---HHHHHH
Q 003020 515 ERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILA-----GADLP---HMAKRY 586 (856)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-----~~~~~---~~A~~~ 586 (856)
++.++.... .| +. ...+ .......++.... ..+++ ++|+..
T Consensus 170 l~~l~~~~~-~p-~~----------------~~~l-------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 170 LGAIDDANL-TP-AE----------------KRDL-------------EADAAAELVRLSFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred HHHHHhCCC-CH-HH----------------HHHH-------------HHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence 544443332 11 00 0000 0000111111111 11222 566667
Q ss_pred HHHHHHc-CCCCChH-hH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 587 LRKMQEA-GLVSDCI-PY----CAVISSYMKLGQLEMAEEVYKDMIRFNVE-PDVVVYGVLINAFADVGNVKQAQSYFDA 659 (856)
Q Consensus 587 ~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (856)
++.+.+. ...|+.. .+ ...+..+...|++++|+..|+++++.+.+ |+. ....+..+|...|++++|+..|++
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 7776654 1122211 11 11123345668888888888888876532 332 222246678888889999998888
Q ss_pred HHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHHcCCHHH
Q 003020 660 MESAGLPP---NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-----------SPD---VYTSNCMIDLYSERSMVRQ 722 (856)
Q Consensus 660 ~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~ 722 (856)
+.+..... .......+..++...|++++|...++.+.+... .|+ ...+..++..+...|++++
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 87643111 134556667778888999999988888876421 123 2345567778889999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 723 AEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 723 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
|++.++++....|.++..+..++.++...|++++|++.++++++..|. +...+...+..+...|++++|..+++++++.
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999887 7888899999999999999999999999984
Q ss_pred CCCCCHHHHHHHHHHH
Q 003020 803 AIQPDDFTFKSLGAVL 818 (856)
Q Consensus 803 g~~p~~~~~~~l~~~~ 818 (856)
.|+......+-..+
T Consensus 457 --~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 457 --EPQDPGVQRLARAR 470 (765)
T ss_pred --CCCCHHHHHHHHHH
Confidence 78877655555444
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.5e-21 Score=212.10 Aligned_cols=329 Identities=13% Similarity=0.084 Sum_probs=262.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc
Q 003020 500 ANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPD---KCSYNSLIQILAG 576 (856)
Q Consensus 500 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~ 576 (856)
..+..+...|++++|...|.++.+..|.+..++..++..+...|++++|..+++.+...+..++ ..++..++..+..
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3355566778888888888888888777888888889999999999999999998887532222 2457788888999
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 003020 577 ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDV----VVYGVLINAFADVGNVKQ 652 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 652 (856)
.|+++.|..+|.++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999988753 456778899999999999999999999999886544322 245667778889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003020 653 AQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKK 732 (856)
Q Consensus 653 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 732 (856)
|...|+++.+.. +.+...+..++..+.+.|++++|.++|+++.+.+......++..++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 4566788889999999999999999999998754323345678899999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 733 KGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV---DGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 733 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
..|.+ ..+..++..+.+.|++++|.++++++++.. |+...+..++..+.. .|+.++++.++++|++.+++|++.
T Consensus 278 ~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGA-DLLLALAQLLEEQEGPEAAQALLREQLRRH--PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 86654 455889999999999999999999999875 566778777766664 569999999999999988887776
Q ss_pred HHHHHHHHHHHcCHHHHHhhcchhhHHHHH
Q 003020 810 TFKSLGAVLMKCGLELTRKKNAQSGLQAWM 839 (856)
Q Consensus 810 ~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~ 839 (856)
..|.++|+-...-.+..|..+.|-
T Consensus 355 ------~~c~~cg~~~~~~~~~c~~c~~~~ 378 (389)
T PRK11788 355 ------YRCRNCGFTARTLYWHCPSCKAWE 378 (389)
T ss_pred ------EECCCCCCCCccceeECcCCCCcc
Confidence 447778843333344455544443
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=2.1e-19 Score=204.29 Aligned_cols=335 Identities=7% Similarity=-0.060 Sum_probs=219.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcC
Q 003020 430 RTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERG 509 (856)
Q Consensus 430 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 509 (856)
..++..+.+.|++++|+.+++..+...+. +...+..++......|++++|...++++....|.+..++..++..+...|
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 34455566666666666666666655433 23344444455556677777777777777767777777777777777777
Q ss_pred CHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 003020 510 HVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRK 589 (856)
Q Consensus 510 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~ 589 (856)
++++|+..|+++....|.+...+..++.++...|++++|...++.+...... +...+..+ ..+...|++++|...++.
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 7777777777777766667777777777777777777777777766554222 22222222 335667777777777777
Q ss_pred HHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCC
Q 003020 590 MQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQ----AQSYFDAMESAGL 665 (856)
Q Consensus 590 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~ 665 (856)
+++....++...+..+...+...|++++|+..|+++++.. +.+...+..+...+...|++++ |...|+++....
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 6665433334444455566677777777777777777654 3356666677777777777764 677777777653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003020 666 PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMML 745 (856)
Q Consensus 666 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 745 (856)
|.+...+..++..+...|++++|+..++++.+... .+...+..+..++...|++++|+..++++....|.+...+..++
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 44566777777777777777777777777776432 23445556677777777777777777777776666655555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 746 IMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 746 ~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.++...|++++|+..|+++++..|.
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChh
Confidence 6777777777777777777776555
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=1.1e-19 Score=206.43 Aligned_cols=335 Identities=10% Similarity=0.032 Sum_probs=292.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Q 003020 462 YTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGM 541 (856)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 541 (856)
.-...++..+.+.|+.++|..+++.+....|...+++..++......|++++|+..|+++....|.+...+..+...+..
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34555677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 003020 542 GRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEV 621 (856)
Q Consensus 542 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 621 (856)
.|++++|+..|+++.+.. +.+...+..++.++...|++++|...++.+...... +...+..+ ..+...|++++|+..
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999999862 335677888999999999999999999988776533 33334333 347889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHh
Q 003020 622 YKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKE----AQETYKLLRS 697 (856)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~ 697 (856)
++.+++....++...+..+..++...|++++|...++++.... +.+...+..++.++...|++++ |+..|+++.+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9999876544455566666788899999999999999999875 6678888999999999999986 8999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 698 LEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYN 777 (856)
Q Consensus 698 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 777 (856)
..+ .+...+..++..+...|++++|+..++++....|.++.++..++.++...|++++|+..++++.+.+|. ++..+.
T Consensus 279 l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~ 356 (656)
T PRK15174 279 FNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNR 356 (656)
T ss_pred hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHH
Confidence 542 356788899999999999999999999999999999999999999999999999999999999998876 555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 778 NVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 778 ~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
.++.++...|++++|+..|+++++.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6788999999999999999999884
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=5.4e-19 Score=205.49 Aligned_cols=425 Identities=13% Similarity=0.044 Sum_probs=305.8
Q ss_pred CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003020 316 NGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYN 395 (856)
Q Consensus 316 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 395 (856)
..+.++..-.-.+......|+.++|++++.+..... ..+...+..+..++.+.|++++|..++++.++.. |.+...+.
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 87 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQR 87 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 344556666667777889999999999999998632 3345578999999999999999999999998764 55677888
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcC
Q 003020 396 ILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAG 475 (856)
Q Consensus 396 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 475 (856)
.++.++...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++++..+. +...+..++.++...+
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 88899999999999999999998864 34556 888999999999999999999999987543 5556667888888899
Q ss_pred ChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCH---HHHHHHH
Q 003020 476 MLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNY---DKACNLF 552 (856)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~ 552 (856)
..+.|+..++++.. .|.... .+ ....+.... ...+.......+++ ++|+..+
T Consensus 165 ~~e~Al~~l~~~~~-~p~~~~---~l--------~~~~~~~~~-------------r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 165 LSAPALGAIDDANL-TPAEKR---DL--------EADAAAELV-------------RLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred ChHHHHHHHHhCCC-CHHHHH---HH--------HHHHHHHHH-------------HhhcccccChhHHHHHHHHHHHHH
Confidence 99999999887664 221000 00 000000000 00000111112223 6677777
Q ss_pred HHHHhC-CCCCCHH-HHH----HHHHHHHcCCChHHHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 553 DSMTSH-GAVPDKC-SYN----SLIQILAGADLPHMAKRYLRKMQEAGLV-SDCIPYCAVISSYMKLGQLEMAEEVYKDM 625 (856)
Q Consensus 553 ~~m~~~-~~~p~~~-~~~----~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (856)
+.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+++.+.+ |+. ....+...|...|++++|+..|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 777643 1122211 111 1133445667888888888887776532 221 2222466788888888888888887
Q ss_pred HHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHH
Q 003020 626 IRFNVEP---DVVVYGVLINAFADVGNVKQAQSYFDAMESAGL-----------PPN---AVIYNSLIKLYTKVGYLKEA 688 (856)
Q Consensus 626 ~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A 688 (856)
.+..... .......+..++...|++++|..+++.+..... .|+ ...+..+...+...|++++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 7643221 134455566677888888888888888876421 123 23456777888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003020 689 QETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESG 768 (856)
Q Consensus 689 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 768 (856)
++.++++....+ .+...+..++..+...|++++|++.++++....|.+...+..++..+...|++++|+++++++++..
T Consensus 379 ~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 379 EMRARELAYNAP-GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999887542 4467788889999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCH
Q 003020 769 LISDL 773 (856)
Q Consensus 769 ~~p~~ 773 (856)
|. ++
T Consensus 458 Pd-~~ 461 (765)
T PRK10049 458 PQ-DP 461 (765)
T ss_pred CC-CH
Confidence 76 54
No 25
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.88 E-value=1.1e-15 Score=157.47 Aligned_cols=618 Identities=12% Similarity=0.043 Sum_probs=471.3
Q ss_pred CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHH
Q 003020 173 SWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWL 252 (856)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 252 (856)
+...|+-++....+.++.+| ..|-+-.+.--..|++..|..+..+--+. ++-+...|.-.+ +....+.|..+.
T Consensus 266 DikKaR~llKSvretnP~hp--~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNPKHP--PGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHhcCCCCC--chHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHH
Confidence 66778888888888764444 44555556666678888888877654443 222555665444 445566677777
Q ss_pred HHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHH
Q 003020 253 ERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYG 332 (856)
Q Consensus 253 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (856)
-.++..-+. .+..|-..... ..+...=.+++.+.++ ..+.++..|...+
T Consensus 339 A~Avr~~P~-Sv~lW~kA~dL---E~~~~~K~RVlRKALe-----------------------~iP~sv~LWKaAV---- 387 (913)
T KOG0495|consen 339 ANAVRFLPT-SVRLWLKAADL---ESDTKNKKRVLRKALE-----------------------HIPRSVRLWKAAV---- 387 (913)
T ss_pred HHHHHhCCC-ChhhhhhHHhh---hhHHHHHHHHHHHHHH-----------------------hCCchHHHHHHHH----
Confidence 777665221 22222222211 1122233344554432 2233556665544
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 003020 333 KAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASR 412 (856)
Q Consensus 333 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 412 (856)
.....++|.-++.+..+. ++.+.. |.-++.+..-|+.|..++....+ .+|.+...|.+-...--.+|+.+...+
T Consensus 388 elE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred hccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 456677799999988875 332333 34456677788999999999884 467788888888888888999998888
Q ss_pred HHHHH----HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHHcCChHHHHHHHHH
Q 003020 413 YFWKM----KEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEID--EYTQSALTRMYIEAGMLEKSWLWFRR 486 (856)
Q Consensus 413 ~~~~m----~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~ 486 (856)
+.++- ...|+..+...|..=...|-+.|..--+..+....+..|+.-. ..|+..-...|.+.+.++-++.+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 87654 4578888888898888888888988888888888888776543 35888889999999999999999999
Q ss_pred HHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 003020 487 FHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCS 566 (856)
Q Consensus 487 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 566 (856)
++...|.....|...+..--..|..++-..+|.++....|.....|......+-..|+...|..++....+.... +...
T Consensus 542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seei 620 (913)
T KOG0495|consen 542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEI 620 (913)
T ss_pred HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHH
Confidence 999999999999999999999999999999999999998888999999999999999999999999998886332 6677
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 003020 567 YNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDV-VVYGVLINAFA 645 (856)
Q Consensus 567 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 645 (856)
+-..+.......+++.|..+|.+.... .++..+|.--+....-.++.++|.+++++.++. -|+. ..|..+...+-
T Consensus 621 wlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence 888888888999999999999998875 466677776666667788999999999999885 4554 48888888899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEE 725 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 725 (856)
+.++.+.|...|..-.+. +|..+..|-.+.+.-.+.|.+-.|..++++..-.++ .+...|...+++-.+.|+.+.|..
T Consensus 697 ~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHH
Confidence 999999999988877665 456667888888888889999999999998876553 567788899999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003020 726 IFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQ 805 (856)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 805 (856)
+..++++..|.+...|.--+....+.++-...+..+++.. -|+...-.++..+....+++.|.+.|.+.++. .
T Consensus 775 lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce-----~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d 847 (913)
T KOG0495|consen 775 LMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-----HDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--D 847 (913)
T ss_pred HHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhcc-----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--C
Confidence 9999999889999999888888888887666666555543 37788888999999999999999999999884 6
Q ss_pred CCH-HHHHHHHHHHHHcC----HHHHHhhcchhhH---HHHHHHHhhHhhh
Q 003020 806 PDD-FTFKSLGAVLMKCG----LELTRKKNAQSGL---QAWMSTLSSVIEE 848 (856)
Q Consensus 806 p~~-~~~~~l~~~~~~~G----~~~~~~~~~~~~~---~~~~~~~~~~~~~ 848 (856)
||. .+|..+.......| ..++.++.....| ..|.++..++...
T Consensus 848 ~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i~n~ 898 (913)
T KOG0495|consen 848 PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDIKNW 898 (913)
T ss_pred CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhHHhc
Confidence 665 56888888888999 5556666655444 4677776665544
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=2.5e-16 Score=168.98 Aligned_cols=609 Identities=13% Similarity=0.073 Sum_probs=415.6
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHH
Q 003020 167 ILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKE 246 (856)
Q Consensus 167 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 246 (856)
.+...|++++|..++..+.++. +.+...|-.|...|-.+|+.+.+...|-.+.-.++. |..-|..+.....+.|+++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHH
Confidence 3555699999999999999885 667788999999999999999999988766665555 7789999999999999999
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHh----
Q 003020 247 EAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSY---- 322 (856)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 322 (856)
+|.-.|.++++..+ ++....---...|.+.|+...|..-|.++... .++.|..
T Consensus 225 qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~----------------------~p~~d~er~~d 281 (895)
T KOG2076|consen 225 QARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQL----------------------DPPVDIERIED 281 (895)
T ss_pred HHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhh----------------------CCchhHHHHHH
Confidence 99999999999853 34445555677889999999999999988632 1111222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--------------
Q 003020 323 TYNTLIDTYGKAGQLKEASETFAQMLREG-IVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHC-------------- 387 (856)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------------- 387 (856)
.--.+++.+...++.+.|.+.++.....+ -..+...++.++..+.+...++.|......+.....
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 22234566777788889999888877632 123445677888888888888888888777665211
Q ss_pred -------------CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 388 -------------PPDTRTYNILIFLHAKNDKISMASRYFWKMKEAN--LEPDIVSYRTLLYAYSIRRMVCEAEELISEM 452 (856)
Q Consensus 388 -------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 452 (856)
.++..++. ++-++.+....+....+...+.+.. +.-+...|.-+..+|...|++.+|+.+|..+
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred ccccccccCCCCCCccchhHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 12222211 1222333333344444444444444 3445678889999999999999999999999
Q ss_pred hcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCC-------
Q 003020 453 DGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGK------- 525 (856)
Q Consensus 453 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------- 525 (856)
......-+...|-.++.+|...|.+++|.+.|++++...|.+.++...+...+.+.|+.++|.+.+..+...+
T Consensus 441 ~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~ 520 (895)
T KOG2076|consen 441 TNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEAC 520 (895)
T ss_pred hcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhc
Confidence 9876666788999999999999999999999999999999999999999999999999999999998855332
Q ss_pred --CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----CCC-----------------CHHHHHHHHHHHHcCCChH
Q 003020 526 --KLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHG-----AVP-----------------DKCSYNSLIQILAGADLPH 581 (856)
Q Consensus 526 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p-----------------~~~~~~~ll~~~~~~~~~~ 581 (856)
.+...+.-...+.+.+.|+.++-+.+-..|+... +-| ...+...++.+-.+.++..
T Consensus 521 a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 600 (895)
T KOG2076|consen 521 AWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDN 600 (895)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchH
Confidence 2334455566777888888887666555544321 111 1112222333333333222
Q ss_pred HHHHHHH------HHHHcCCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHHhcC
Q 003020 582 MAKRYLR------KMQEAGLVSDC--IPYCAVISSYMKLGQLEMAEEVYKDMIRFNV--EPDV---VVYGVLINAFADVG 648 (856)
Q Consensus 582 ~A~~~~~------~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g 648 (856)
...+-.. .....++..+. ..+.-++.++++.+++++|+.+...+..... .++. ..-...+.+.+..+
T Consensus 601 ~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~ 680 (895)
T KOG2076|consen 601 VMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYAR 680 (895)
T ss_pred HhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcC
Confidence 1111111 11111222121 2345667788999999999999999886432 1222 22344566777899
Q ss_pred CHHHHHHHHHHHHHC-CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003020 649 NVKQAQSYFDAMESA-GL---PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAE 724 (856)
Q Consensus 649 ~~~~A~~~~~~~~~~-~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 724 (856)
++..|.+.++.|... +. +.-...|+...+...+.|+-.--.+.+..+.......+...+..-+.-....+.+.-|+
T Consensus 681 d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al 760 (895)
T KOG2076|consen 681 DPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHAL 760 (895)
T ss_pred CHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHH
Confidence 999999999999764 11 12234566556666666554333344333333222222333323344456778899999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 003020 725 EIFEIMKKKGDANEFTYAMMLIMYKRN----------GRFEEATRIAKQMRESGLI-SDLLSYNNVLGLYAVDGRFKDVI 793 (856)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~ 793 (856)
..+-++....|.+|.+-..|+.++... -..-.++.++++..+.... -...++++++++|-..|-..-|+
T Consensus 761 ~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~ 840 (895)
T KOG2076|consen 761 QEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAV 840 (895)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHH
Confidence 999999888888887666665554321 1234566666666665322 13478999999999999999999
Q ss_pred HHHHHHHHc
Q 003020 794 GTFKDMVNA 802 (856)
Q Consensus 794 ~~~~~~~~~ 802 (856)
.+|++.++.
T Consensus 841 ~YYekvL~~ 849 (895)
T KOG2076|consen 841 SYYEKVLEV 849 (895)
T ss_pred HHHHHHhCC
Confidence 999999984
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=4.8e-17 Score=184.72 Aligned_cols=461 Identities=10% Similarity=-0.001 Sum_probs=317.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003020 323 TYNTLIDTYGKAGQLKEASETFAQMLREGIVPTT--VTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFL 400 (856)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 400 (856)
.|...| ...+.|+++.|++.|++.++.. |+. ..+ .++..+...|+.++|+..+++.... .+........+...
T Consensus 37 ~y~~ai-i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~l 111 (822)
T PRK14574 37 QYDSLI-IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARA 111 (822)
T ss_pred HHHHHH-HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHH
Confidence 344444 3558999999999999998864 443 234 8888888889999999999998821 12233344444668
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHH
Q 003020 401 HAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKS 480 (856)
Q Consensus 401 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 480 (856)
+...|++++|+++|+++.+..+ .+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 8888999999999999998753 34667777788889999999999999999875 34455555555555556666668
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 003020 481 WLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGA 560 (856)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 560 (856)
+..++++....|.+.+.+..+...+.+.|-...|.+....-.....+....+- +.+.|.+..+.. .
T Consensus 189 L~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l----------~~~~~a~~vr~a----~ 254 (822)
T PRK14574 189 LQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL----------ERDAAAEQVRMA----V 254 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH----------HHHHHHHHHhhc----c
Confidence 88888888888888888888888888888888887776654433222211110 011111111111 0
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCCChHh----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003020 561 VPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAG--LVSDCIP----YCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDV 634 (856)
Q Consensus 561 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 634 (856)
.++..- . .+-.-.+.|+.-++.+...- .++.... ..-.+-++...|++.++++.|+.+...+.+...
T Consensus 255 ~~~~~~-~------~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~ 327 (822)
T PRK14574 255 LPTRSE-T------ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD 327 (822)
T ss_pred cccccc-h------hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH
Confidence 010000 0 00001233444444444321 1111111 122334566777888888888888876655455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------
Q 003020 635 VVYGVLINAFADVGNVKQAQSYFDAMESAG-----LPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA--------- 700 (856)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------- 700 (856)
.+-..+.++|...+++++|..+|+.+.... .+++......|.-++...+++++|..+++.+.+...
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~ 407 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP 407 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence 567778888888888888888888876532 122333456777888888888888888888776211
Q ss_pred ----CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 701 ----SPDV-YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLS 775 (856)
Q Consensus 701 ----~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 775 (856)
.||- ..+..++..+.-.|++.+|++.++++....|.|...+..++.++...|++.+|++.++.+....|. +..+
T Consensus 408 ~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~ 486 (822)
T PRK14574 408 GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLIL 486 (822)
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHH
Confidence 1222 234456677888999999999999999999999999999999999999999999999998888877 7888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003020 776 YNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLG 815 (856)
Q Consensus 776 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 815 (856)
....+.++...|+|++|..+.++.++. .|+...-..|-
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~ 524 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQELD 524 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHHH
Confidence 899999999999999999999998884 77766544433
No 28
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=3.3e-19 Score=193.70 Aligned_cols=297 Identities=16% Similarity=0.104 Sum_probs=206.4
Q ss_pred HcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHccCCHHHH
Q 003020 473 EAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLT----VLVFNVMVKAYGMGRNYDKA 548 (856)
Q Consensus 473 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A 548 (856)
..|++++|...|+++...+|.+..++..++..+...|++++|...++.+......+ ...+..++..|...|++++|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 33444444444444444444444444444444555555555555555444432211 24566667777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 549 CNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSD----CIPYCAVISSYMKLGQLEMAEEVYKD 624 (856)
Q Consensus 549 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (856)
..+|+++.+. .+++..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|++
T Consensus 127 ~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777777664 233556677777777777777777777777776543322 12355677778889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003020 625 MIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDV 704 (856)
Q Consensus 625 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 704 (856)
+.+.. +.+...+..++..+.+.|++++|.++|+++.+.+......++..++.+|...|++++|...++++.+.. |+.
T Consensus 206 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~ 282 (389)
T PRK11788 206 ALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGA 282 (389)
T ss_pred HHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc
Confidence 98764 335667888889999999999999999999876422224678888999999999999999999988853 565
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR---NGRFEEATRIAKQMRESGLISDLL 774 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 774 (856)
..+..++..+.+.|++++|..+++++.+..|. ...+..++..+.. .|+.++++.+++++++.++.|++.
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~-~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRRHPS-LRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC-HHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 66688889999999999999999999887554 4466666666554 558999999999999877666654
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=2.1e-16 Score=162.60 Aligned_cols=514 Identities=13% Similarity=0.037 Sum_probs=242.2
Q ss_pred HHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003020 210 WSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKK 289 (856)
Q Consensus 210 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 289 (856)
...=.+++.+.++.- +.++..|...+. ..+.+.|+.++.++++.- +... -|.-+|.+..-|+.|..++++
T Consensus 362 ~~~K~RVlRKALe~i-P~sv~LWKaAVe----lE~~~darilL~rAvecc-p~s~----dLwlAlarLetYenAkkvLNk 431 (913)
T KOG0495|consen 362 TKNKKRVLRKALEHI-PRSVRLWKAAVE----LEEPEDARILLERAVECC-PQSM----DLWLALARLETYENAKKVLNK 431 (913)
T ss_pred HHHHHHHHHHHHHhC-CchHHHHHHHHh----ccChHHHHHHHHHHHHhc-cchH----HHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555542 224444544432 234455666666666541 1111 122344455556666666665
Q ss_pred HhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHhHHHHHHH
Q 003020 290 WSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQM----LREGIVPTTVTFNTMIHI 365 (856)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~g~~p~~~~~~~ll~~ 365 (856)
..+ ..+.+...|-+-...--.+|+.+....+.++- ...|+..+...|..=...
T Consensus 432 aRe-----------------------~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~ 488 (913)
T KOG0495|consen 432 ARE-----------------------IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEA 488 (913)
T ss_pred HHh-----------------------hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHH
Confidence 532 23334555555555555566666666555443 334666666666666666
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 003020 366 YGNNDQLAEVDSLIKKMEELHCPP--DTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVC 443 (856)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 443 (856)
|...|..-.+..+....+..|+.. -..+|+.-...+.+.+.++-|..+|...++-- +-+...|......--..|..+
T Consensus 489 ~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred HhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHH
Confidence 666666666666666666555432 22456666666666666666666666665532 233444544444444455566
Q ss_pred HHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhc
Q 003020 444 EAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQE 523 (856)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 523 (856)
+-..+|+++...-.+ ....+.....-+-..|+...|+.++.++...+|.+.+.|..-+........++.|..+|.+...
T Consensus 568 sl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 568 SLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 666666665554221 2333333444444455555555555555555555555555555555555555555555544443
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhH
Q 003020 524 GKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPD-KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPY 602 (856)
Q Consensus 524 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 602 (856)
. .++..+|..-+...--.++.++|++++++.++. -|+ ...|..+...+-+.++.+.|...|..-.+. ++..+..|
T Consensus 647 ~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 647 I-SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred c-CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 2 233444444444444444555555555444443 222 223333344444444444444444332221 12223334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003020 603 CAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKV 682 (856)
Q Consensus 603 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 682 (856)
..|...-.+.|.+.+|..++++..-.++ .+...|-..|..-.+.|+.+.|..++.+.++. .|.+...|..-|...-+.
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCc
Confidence 4444444444444444444444444432 24444444444444444444444444444443 233334444444443333
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003020 683 GYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAK 762 (856)
Q Consensus 683 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 762 (856)
++-..+...+++. ..|+.....+...+....++++|.+.|+++.+.+|.+..+|..+...+...|.-++-.+++.
T Consensus 801 ~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 801 QRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred ccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3333333222221 12222233333444444444444444444444444444444444444444444444444444
Q ss_pred HHHHcCC
Q 003020 763 QMRESGL 769 (856)
Q Consensus 763 ~~~~~~~ 769 (856)
+.....|
T Consensus 876 ~c~~~EP 882 (913)
T KOG0495|consen 876 KCETAEP 882 (913)
T ss_pred HHhccCC
Confidence 4444333
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.84 E-value=6.7e-15 Score=158.23 Aligned_cols=629 Identities=12% Similarity=0.022 Sum_probs=422.4
Q ss_pred cccccHHHHhhHhhhhc--C------hhHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003020 143 DTVKDLDEALKPWAENL--S------NKERSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQ 214 (856)
Q Consensus 143 ~~~~~~~~al~~~~~~~--~------~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 214 (856)
...|+.++|...+.+.+ + ..+++.|+..+|+.++++.++-.+.... +.|...|-.+.....++|.+.+|+
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHH
Confidence 34588888888887722 2 3467889999999999999888776553 566689999999999999999999
Q ss_pred HHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHH----HHHHHHHHhcCChhHHHHHHHHH
Q 003020 215 SLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTM----GIVVQMYKKAGEFQKAEEFFKKW 290 (856)
Q Consensus 215 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~g~~~~A~~~~~~~ 290 (856)
-+|.++++..+. +....-.-+..|-+.|+...|..-|.++.+..++.|-.-. -.+++.+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999998655 7777777788899999999999999999988653333322 33455666777789999998877
Q ss_pred hhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH-----------
Q 003020 291 SSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTF----------- 359 (856)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~----------- 359 (856)
... .....+...++.++..|.+..+++.|......+......+|..-+
T Consensus 307 ~s~---------------------~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 307 LSK---------------------EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred Hhh---------------------ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 531 112234467888999999999999999888887762222221111
Q ss_pred ---------------HHHHHHHhcCCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 003020 360 ---------------NTMIHIYGNNDQLAEVDSLIKKMEELHCP--PDTRTYNILIFLHAKNDKISMASRYFWKMKEANL 422 (856)
Q Consensus 360 ---------------~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 422 (856)
..+.-++.+....+....+.....+.+.. -+...|.-+..++...|++.+|+++|..+.....
T Consensus 366 ~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~ 445 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG 445 (895)
T ss_pred ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 12223344445555555555555555533 3556888899999999999999999999987655
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--------
Q 003020 423 EPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMS-------- 494 (856)
Q Consensus 423 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------- 494 (856)
-.+...|-.+..+|...|.+++|.+.|++.+...+. +......+...+.+.|+.++|.+.+..+...++.+
T Consensus 446 ~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~ 524 (895)
T KOG2076|consen 446 YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP 524 (895)
T ss_pred ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH
Confidence 566789999999999999999999999999876432 45577778888999999999999998876333221
Q ss_pred -chhhHHHHHHHhhcCCHHHHHHHHHHHhcCC-----------------------CCcHHHHHHHHHHHHccCCHHHHHH
Q 003020 495 -SEGYSANIDGYGERGHVLEAERAFICCQEGK-----------------------KLTVLVFNVMVKAYGMGRNYDKACN 550 (856)
Q Consensus 495 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~li~~~~~~g~~~~A~~ 550 (856)
........+.+.+.|+.++=+..-..+.... +.........+.+-.+.++.....+
T Consensus 525 e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 604 (895)
T KOG2076|consen 525 ERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEK 604 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhh
Confidence 1123445677888888877554433322210 1112222223333333332211111
Q ss_pred H------HHHHHhCCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CChH----hHHHHHHHHHhcCCHHH
Q 003020 551 L------FDSMTSHGAVPDK--CSYNSLIQILAGADLPHMAKRYLRKMQEAGLV-SDCI----PYCAVISSYMKLGQLEM 617 (856)
Q Consensus 551 ~------~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~g~~~~ 617 (856)
- +.....+++..+. ..+.-++..+++.+++++|+.+...+.+...- -+.. .-...+.+.+..+++..
T Consensus 605 ~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~ 684 (895)
T KOG2076|consen 605 ALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGD 684 (895)
T ss_pred cccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHH
Confidence 1 1111122222222 23556777889999999999999988775321 1222 23455666778899999
Q ss_pred HHHHHHHHHHC-CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003020 618 AEEVYKDMIRF-NV---EPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYK 693 (856)
Q Consensus 618 A~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 693 (856)
|...++.+... +. .--...||...+.+.+.++-.--..++..+.......++......+......+.+.-|+..|-
T Consensus 685 a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ 764 (895)
T KOG2076|consen 685 AFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYM 764 (895)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHH
Confidence 99999999864 11 113446776666666666544444444444333211223333444555667889999999887
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHH----------HcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 003020 694 LLRSLEASPD-VYTSNCMIDLYS----------ERSMVRQAEEIFEIMKKKGDA--NEFTYAMMLIMYKRNGRFEEATRI 760 (856)
Q Consensus 694 ~~~~~~~~p~-~~~~~~l~~~~~----------~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 760 (856)
++.... || +.+--+++.++. +.-..-+++.++.+-.+...+ ...++.+++++|-..|-..-|+.+
T Consensus 765 ra~~~~--pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~Y 842 (895)
T KOG2076|consen 765 RAFRQN--PDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSY 842 (895)
T ss_pred HHHHhC--CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 776643 44 222223333332 122356677777777766544 566889999999999999999999
Q ss_pred HHHHHHcCCCC---------CH--HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 761 AKQMRESGLIS---------DL--LSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 761 ~~~~~~~~~~p---------~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
|+++++..|.+ |. .+-.++.-.|-..|...-|.+++++
T Consensus 843 YekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 843 YEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 99999985442 11 2335566789999999999988876
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=1.4e-15 Score=172.84 Aligned_cols=213 Identities=13% Similarity=0.058 Sum_probs=120.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC-----CCChHhHHHHHHH
Q 003020 534 VMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGL-----VSDCIPYCAVISS 608 (856)
Q Consensus 534 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~ 608 (856)
-.+-++...+++.++++.|+.+...+.+....+-..+.++|...+++++|..+++.+..... +++......|.-+
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 34456667778888888888888776655556777777777777888888877777765431 2233334566667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHH
Q 003020 609 YMKLGQLEMAEEVYKDMIRFNVEPD-VVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA-VIYNSLIKLYTKVGYLK 686 (856)
Q Consensus 609 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 686 (856)
|...+++++|..+++++.+. .|- ...| |.. .....||- ..+..++..+...|++.
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~--~p~~~~~~----------~~~-----------~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQ--TPYQVGVY----------GLP-----------GKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred HHhcccHHHHHHHHHHHHhc--CCcEEecc----------CCC-----------CCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 77777777777777777653 110 0000 000 00011222 22233344455555556
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 687 EAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 687 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
+|++.++.+.... +-+......+.+.+...|.+.+|++.++.+....|.+..+....+.++...|++++|..+.+.+.+
T Consensus 434 ~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 434 TAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 6665555554432 134445555555555566666666666555555555555555555555566666666666655555
Q ss_pred cCCC
Q 003020 767 SGLI 770 (856)
Q Consensus 767 ~~~~ 770 (856)
..|+
T Consensus 513 ~~Pe 516 (822)
T PRK14574 513 RSPE 516 (822)
T ss_pred hCCC
Confidence 5544
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=4.4e-17 Score=160.24 Aligned_cols=486 Identities=14% Similarity=0.101 Sum_probs=332.3
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHH-HHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhh
Q 003020 228 INSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTM-GIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMI 306 (856)
Q Consensus 228 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 306 (856)
+-.....+..-|..+..+.+|+..|+-+++...-|+.... ..+.+.+.+..++.+|+.+|+.....
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq------------- 266 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ------------- 266 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh-------------
Confidence 3345556667788888899999999998888777776544 34567788888999999999876531
Q ss_pred hhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 003020 307 GKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELH 386 (856)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 386 (856)
.+..+........+.+...+.+.|++++|+..|+...+. .|+..+-..|+-++..-|+.++..+.|.+|+..-
T Consensus 267 -----vpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip 339 (840)
T KOG2003|consen 267 -----VPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIP 339 (840)
T ss_pred -----ccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCC
Confidence 111122222456677777888999999999999998775 5787765566666667789999999999998642
Q ss_pred CC------------CCHHHHHHHH-----HHHHccCC--hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 003020 387 CP------------PDTRTYNILI-----FLHAKNDK--ISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEE 447 (856)
Q Consensus 387 ~~------------~~~~~~~~li-----~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 447 (856)
.. |+....|.-+ .-+-+.++ .+.++-.--++..--+.|+... -.+-.++
T Consensus 340 ~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle 407 (840)
T KOG2003|consen 340 GEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLE 407 (840)
T ss_pred CCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHH
Confidence 22 3333333222 11111111 1222222222222122222110 0111222
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch-hhHHHHHHHhh--cCCHHHHHHHHHHHhcC
Q 003020 448 LISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSE-GYSANIDGYGE--RGHVLEAERAFICCQEG 524 (856)
Q Consensus 448 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 524 (856)
.++......+..+. -..-.-.+.+.|+++.|.++++-+...+..... +-+.+-..+.- -.++.+|.+.-+.+...
T Consensus 408 ~lk~s~~~~la~dl--ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~ 485 (840)
T KOG2003|consen 408 SLKASQHAELAIDL--EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI 485 (840)
T ss_pred HHHHhhhhhhhhhh--hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc
Confidence 22222111111111 111233467788888888888877765544333 23333222222 33567777777777777
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHH
Q 003020 525 KKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCA 604 (856)
Q Consensus 525 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 604 (856)
..-++.....-...-...|++++|.+.|++.+.....-. .....+...+-..|++++|+..|-++... +..+..+...
T Consensus 486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~q 563 (840)
T KOG2003|consen 486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-EALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQ 563 (840)
T ss_pred cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHH
Confidence 777777777777777788999999999999887522211 12233344567789999999988876543 2346777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003020 605 VISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGY 684 (856)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 684 (856)
+.+.|....+...|++++.+.... ++.|+.+...|...|-+.|+-.+|++++-.--.. +|-|..+...|...|....-
T Consensus 564 ianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHH
Confidence 889999999999999999888765 5668889999999999999999999987766554 57889999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 003020 685 LKEAQETYKLLRSLEASPDVYTSNCMIDLY-SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGR 753 (856)
Q Consensus 685 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 753 (856)
+++|+.+|++..- +.|+..-|..|+..| .+.|++++|.++++...+..|.|...+..|++.+...|-
T Consensus 642 ~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 642 SEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999998765 679999999887665 578999999999999999999999999999998887773
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=9e-14 Score=138.31 Aligned_cols=448 Identities=9% Similarity=0.074 Sum_probs=297.5
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHH
Q 003020 191 ELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIV 270 (856)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 270 (856)
..+...|-.....-..++++..|+++|++++..+.. +...|...+.+-.++.....|..++++++..=+..|. .|-..
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY 147 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHH
Confidence 456778888888888899999999999999987755 8889999999999999999999999999987444333 45556
Q ss_pred HHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003020 271 VQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLRE 350 (856)
Q Consensus 271 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 350 (856)
+.+--..|++..|+++|+++. ...|+...|++.|+.-.+...++.|..+|++.+-
T Consensus 148 ~ymEE~LgNi~gaRqiferW~------------------------~w~P~eqaW~sfI~fElRykeieraR~IYerfV~- 202 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWM------------------------EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL- 202 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHH------------------------cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-
Confidence 667778899999999999986 4567889999999999999999999999999876
Q ss_pred CCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HH
Q 003020 351 GIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHC--PPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPD-IV 427 (856)
Q Consensus 351 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~ 427 (856)
+.|++.+|......-.+.|+...|+++|+.+.+.-. .-+...+++....-.++..++.|.-+|+-.++.-++.. ..
T Consensus 203 -~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raee 281 (677)
T KOG1915|consen 203 -VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEE 281 (677)
T ss_pred -ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHH
Confidence 468999999988888899999999999988875311 11233455555555566777777777777665421111 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhh
Q 003020 428 SYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGE 507 (856)
Q Consensus 428 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 507 (856)
.|.....---+.|+.....+..- .+-.-.|++....+|.+.++|...++....
T Consensus 282 L~k~~~~fEKqfGd~~gIEd~Iv---------------------------~KRk~qYE~~v~~np~nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 282 LYKKYTAFEKQFGDKEGIEDAIV---------------------------GKRKFQYEKEVSKNPYNYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHHHHHHHhcchhhhHHHHh---------------------------hhhhhHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 22222211112222221111100 011123667777888888888888888888
Q ss_pred cCCHHHHHHHHHHHhcCCCCc--HHHHHHHHHH--------HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--
Q 003020 508 RGHVLEAERAFICCQEGKKLT--VLVFNVMVKA--------YGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILA-- 575 (856)
Q Consensus 508 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-- 575 (856)
.|+.+...++|+++....||- -..|.-.|-. -....+.+.+.++|+..++. ++...+||..+--.|+
T Consensus 335 ~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~f 413 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQF 413 (677)
T ss_pred cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHH
Confidence 888888888888888776653 2233333222 13456777778888777773 4445556655444333
Q ss_pred --cCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 576 --GADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQA 653 (856)
Q Consensus 576 --~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 653 (856)
++.++..|.+++..++. ..|-..++...|..-.+.++++....+|++.++-+ +-+..+|......-...|+.+.|
T Consensus 414 eIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 414 EIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHH
Confidence 45566666666665543 34555556666666666666666666666666654 22555666665555566666666
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 654 QSYFDAMESAG-LPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 654 ~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
..+|+-.+... +......|.+.|+.-...|.++.|..+|+++++
T Consensus 491 RaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 491 RAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 66666665432 111223444555555556666666666666655
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=4.6e-15 Score=146.18 Aligned_cols=482 Identities=14% Similarity=0.096 Sum_probs=328.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH-HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC----HHHHHH
Q 003020 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTF-NTMIHIYGNNDQLAEVDSLIKKMEELHCPPD----TRTYNI 396 (856)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ 396 (856)
.+...|..-|..+....+|+..|+-+.+....|+.-.+ ..+.+.+.+...+.+|++.++..+..-...+ ....+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34445666777788889999999999988777876543 4566788899999999999998885421111 234555
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhH--------HHHH
Q 003020 397 LIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQ--------SALT 468 (856)
Q Consensus 397 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--------~~l~ 468 (856)
+.-.+.+.|+++.|+..|+...+. .|+..+-..|+.++..-|+.++..+.|.+|+.....||..-| ..++
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 566788999999999999998875 488888777888888899999999999999865433332211 1222
Q ss_pred HHHHHcCCh--------HHHHHHHH-HHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 003020 469 RMYIEAGML--------EKSWLWFR-RFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAY 539 (856)
Q Consensus 469 ~~~~~~g~~--------~~a~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 539 (856)
.-..+...+ ..|.+..- ......|.-...|.. -.+-.++.+....- .+.-...-..-...+
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~---------g~dwcle~lk~s~~-~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA---------GCDWCLESLKASQH-AELAIDLEINKAGEL 429 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc---------ccHHHHHHHHHhhh-hhhhhhhhhhHHHHH
Confidence 211111110 11111110 001111111111100 00111111111100 011111222334567
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH
Q 003020 540 GMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQ--ILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEM 617 (856)
Q Consensus 540 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 617 (856)
.++|+++.|+++++-..+..-+.-...-+.|-. .+....++-.|.++-+..+... ..+......-.+.....|++++
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHH
Confidence 899999999999998877644333333333322 2223446667777666665432 2333333333444556799999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 618 AEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 618 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
|.+.|++.+.....-....|| +.-.+-..|+.++|+++|-++-.. +..+..++..+...|....+...|++++-....
T Consensus 509 a~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 999999998754332233444 344567889999999999887553 345778888999999999999999999987765
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 698 LEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYN 777 (856)
Q Consensus 698 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 777 (856)
. ++.|+.....|.+.|-+.|+-.+|...+-.--+-.|.|..+..-|+.-|....-+++|+.+|+++.-. .|+..-|.
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwq 663 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQ 663 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHH
Confidence 3 44678899999999999999999999988777777999999999999999999999999999998765 46888887
Q ss_pred HHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 778 NVL-GLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 778 ~l~-~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
.++ .++.+.|+|.+|+++|+...+. +.-|..++..|++.+...|
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 765 6667899999999999998775 5667788999999999999
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=6.5e-13 Score=130.65 Aligned_cols=368 Identities=17% Similarity=0.144 Sum_probs=250.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 320 SSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIF 399 (856)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 399 (856)
+..+|..||.+.|+....+.|.++|++......+.+..+||.+|.+-. +..-.+++.+|......||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 457999999999999999999999999988777889999999997654 2333789999999999999999999999
Q ss_pred HHHccCChHHH----HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH-HHHHHHHHhc----CCCCC----CHhhHHH
Q 003020 400 LHAKNDKISMA----SRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCE-AEELISEMDG----GGLEI----DEYTQSA 466 (856)
Q Consensus 400 ~~~~~g~~~~A----~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-A~~~~~~~~~----~~~~p----~~~~~~~ 466 (856)
...+.|+++.| .+++.+|++.|+.|...+|..+|..+.+.++..+ |..++.+++. ..++| |..-+..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 99999988765 5667889999999999999999999999888765 4444444432 22332 3345666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHH
Q 003020 467 LTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYD 546 (856)
Q Consensus 467 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 546 (856)
.+..|.+..+.+-|.++-.-++.... +...|.. .....-|..+....++....+
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N------------~~~ig~~--------------~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDN------------WKFIGPD--------------QHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCc------------hhhcChH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777665544432110 0000100 011344566777778888899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 547 KACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMI 626 (856)
Q Consensus 547 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 626 (856)
.-...|+.|...-.-|+..+...++++....+.++-..+++..++..|....... -++++..+.
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~~L~ 479 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILMLLA 479 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHHHHh
Confidence 9999999999888889999999999999999999999999999888664322221 223333333
Q ss_pred HCCCCCCHH---HHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C
Q 003020 627 RFNVEPDVV---VYGVLINAFADVGNVKQAQ-SYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-S 701 (856)
Q Consensus 627 ~~~~~~~~~---~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 701 (856)
...+.|+.. -+.....-|+ -++.++. ..-.++.+... .....+.+.-.+.+.|..++|.+++....+.+. -
T Consensus 480 ~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i 555 (625)
T KOG4422|consen 480 RDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI 555 (625)
T ss_pred cCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC
Confidence 333333322 2222221111 1122222 22234444433 344566666677888888888888887755322 2
Q ss_pred CCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 003020 702 PDVYTSN---CMIDLYSERSMVRQAEEIFEIMKKKGDAN 737 (856)
Q Consensus 702 p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 737 (856)
|.....+ -+++.-.+.+..-.|...++-|...+-+.
T Consensus 556 p~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 556 PRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 3333333 55556667778888888888887665333
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.1e-13 Score=136.47 Aligned_cols=223 Identities=12% Similarity=0.064 Sum_probs=178.1
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 574 LAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQA 653 (856)
Q Consensus 574 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 653 (856)
+.-.|+.-.|..-|+..++....++ ..|--+..+|....+.++-...|+++.+.++. |..+|..-...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 3346888888888988888754332 33777778899999999999999999987643 666777777777778899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003020 654 QSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKK 733 (856)
Q Consensus 654 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 733 (856)
..-|++.+..+ |-+...|-.+.-+.-+.++++++...|++..+. ++..+..|+.....+..++++++|.+.|+.+++.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999998875 556677888888888899999999999988773 3345678888899999999999999999999988
Q ss_pred CCC------CHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 734 GDA------NEFTYAMML-IMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 734 ~~~------~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
.|. ++..+..-+ -.+.-.+++..|+.+++++++.+|+ ....|..|+....++|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 765 444332211 1222348899999999999999888 778999999999999999999999999876
No 37
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.71 E-value=5.5e-11 Score=123.27 Aligned_cols=546 Identities=12% Similarity=0.084 Sum_probs=323.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 003020 194 VIHYNIMLRTLGKARKWSYVQSLWDEMSVKGI-VPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQ 272 (856)
Q Consensus 194 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 272 (856)
+..|-..+..+.++|+....+..|++.+..=+ .-....|...+......|-++-++.+|++.++. ++..-.-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 56788889999999999999999999876421 123347889999999999999999999999876 3334667778
Q ss_pred HHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHH---HHHHHHHHHHH
Q 003020 273 MYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLK---EASETFAQMLR 349 (856)
Q Consensus 273 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~ 349 (856)
.+++.+++++|.+.+..+.....+. ....+.+...|..+-+...++-+.- ....+++.+..
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~----------------sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~ 241 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFV----------------SKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR 241 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhh----------------hhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc
Confidence 8889999999999998876432111 1122334456666666655543332 22333444433
Q ss_pred CCCCCCH--HhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---------------------
Q 003020 350 EGIVPTT--VTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDK--------------------- 406 (856)
Q Consensus 350 ~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------------------- 406 (856)
.-+|. ..|.+|.+.|.+.|.++.|..++++.... ...+.-|..+-+.|.....
T Consensus 242 --rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~ 317 (835)
T KOG2047|consen 242 --RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDV 317 (835)
T ss_pred --cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhh
Confidence 23453 36778888888888888888888877743 1233333444444433211
Q ss_pred -hHHHHHHHHHHHHcC-----------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHc
Q 003020 407 -ISMASRYFWKMKEAN-----------LEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEA 474 (856)
Q Consensus 407 -~~~A~~~~~~m~~~~-----------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 474 (856)
++-.+.-|+.+...+ -+.++.+|..-... ..|+..+-...|.++.+. +.|..
T Consensus 318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~k------------- 381 (835)
T KOG2047|consen 318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKK------------- 381 (835)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCccc-------------
Confidence 111222222222211 01122222222211 123334444444444321 11110
Q ss_pred CChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHccCCHHHHHH
Q 003020 475 GMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLT----VLVFNVMVKAYGMGRNYDKACN 550 (856)
Q Consensus 475 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~ 550 (856)
..+.....|..++..|-..|+++.|..+|+++...+-+. ..+|..-...-.+..+++.|++
T Consensus 382 ---------------a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~ 446 (835)
T KOG2047|consen 382 ---------------AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALK 446 (835)
T ss_pred ---------------CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 012223345555566666666666666666555544222 2445555555555556666666
Q ss_pred HHHHHHhCCC-----------C------CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 003020 551 LFDSMTSHGA-----------V------PDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLG 613 (856)
Q Consensus 551 ~~~~m~~~~~-----------~------p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 613 (856)
+.+......- + .+...|+..++.--..|-++....+++++++..+. ++.........+..+.
T Consensus 447 lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~ 525 (835)
T KOG2047|consen 447 LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHK 525 (835)
T ss_pred HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhH
Confidence 5555432200 0 12234555666666778888888889988887654 3333333333445566
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCHHH
Q 003020 614 QLEMAEEVYKDMIRFNVEPDVV-VYGVLINAFAD---VGNVKQAQSYFDAMESAGLPPNAVIYNSL--IKLYTKVGYLKE 687 (856)
Q Consensus 614 ~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~ 687 (856)
-++++.++|++-+..-..|++. .|+..+.-+.+ ..+.+.|..+|++.++ |.||...-+--| ...=.+.|....
T Consensus 526 yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 526 YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6888999998877664456654 88887777664 3468999999999998 666655322222 222335688889
Q ss_pred HHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHH
Q 003020 688 AQETYKLLRSLEASPD--VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEF--TYAMMLIMYKRNGRFEEATRIAKQ 763 (856)
Q Consensus 688 A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~ 763 (856)
|+++|+++... +++. ...|+..|.--...=-+..-.++|+++++.-|.+.. .....+..-++.|..+.|..+|..
T Consensus 605 amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~ 683 (835)
T KOG2047|consen 605 AMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAH 683 (835)
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 99999987652 2232 335666554333222233456677777766443332 334455666788999999999988
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 764 MRES-GLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 764 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
..+. +|..+...|.+.=..-.+.|+ + +.+++|++
T Consensus 684 ~sq~~dPr~~~~fW~twk~FEvrHGn-e---dT~keMLR 718 (835)
T KOG2047|consen 684 GSQICDPRVTTEFWDTWKEFEVRHGN-E---DTYKEMLR 718 (835)
T ss_pred hhhcCCCcCChHHHHHHHHHHHhcCC-H---HHHHHHHH
Confidence 8776 566677888888888889998 3 34455544
No 38
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2.8e-12 Score=126.27 Aligned_cols=414 Identities=15% Similarity=0.162 Sum_probs=247.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH--HhcCCCHHHH-HHHHHHHHhCC----------
Q 003020 320 SSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHI--YGNNDQLAEV-DSLIKKMEELH---------- 386 (856)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~--~~~~g~~~~A-~~~~~~~~~~~---------- 386 (856)
.+++-|.|+.. ..+|.+.++.-+|+.|...|+..+...-..|+.. |.+..++--| .+.|-.|.+.|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 45566666654 4678899999999999999877666554444432 2222222211 12222332222
Q ss_pred ---------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 003020 387 ---------CPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGL 457 (856)
Q Consensus 387 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 457 (856)
.|....++..||.++++--..+.|.+++++-.+...+.+..+||.+|.+-.-. ...+++.+|.....
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhc
Confidence 13344556666666666666666666666655554555566666665543321 12455566665556
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 003020 458 EIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVK 537 (856)
Q Consensus 458 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 537 (856)
.||..|+++++.+..+.|+++.|.
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar-------------------------------------------------------- 293 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDAR-------------------------------------------------------- 293 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHH--------------------------------------------------------
Confidence 666666666665555555554442
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH-HHHHHHHHHH----cCC----CCChHhHHHHHHH
Q 003020 538 AYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHM-AKRYLRKMQE----AGL----VSDCIPYCAVISS 608 (856)
Q Consensus 538 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-A~~~~~~~~~----~~~----~~~~~~~~~l~~~ 608 (856)
..|.+++.+|.+.|+.|...+|..+|..+++.+++.+ +..++.++.. +.+ +.|...+...+..
T Consensus 294 --------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~I 365 (625)
T KOG4422|consen 294 --------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSI 365 (625)
T ss_pred --------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHH
Confidence 2455677778888888888888888887777776644 3333333332 222 2244456666777
Q ss_pred HHhcCCHHHHHHHHHHHHHCC----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003020 609 YMKLGQLEMAEEVYKDMIRFN----VEPDV---VVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK 681 (856)
Q Consensus 609 ~~~~g~~~~A~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 681 (856)
|....+.+-|.++..-+.... +.|+. .-|..+....|+....+.-+..|+.|.-.-+-|+..+...++++...
T Consensus 366 c~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v 445 (625)
T KOG4422|consen 366 CSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDV 445 (625)
T ss_pred HHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhh
Confidence 777777777777665543211 22332 23455666777777788888888888766667788888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--------------------CHHHHHHH-HHHHHhCCCCCHHH
Q 003020 682 VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERS--------------------MVRQAEEI-FEIMKKKGDANEFT 740 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------------------~~~~A~~~-~~~~~~~~~~~~~~ 740 (856)
.|.++-.-+++..+...|..-....-..++..+++.. ++.++.+. -.++.+ ..-.+..
T Consensus 446 ~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~-~~~~~t~ 524 (625)
T KOG4422|consen 446 ANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA-QDWPATS 524 (625)
T ss_pred cCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-ccCChhH
Confidence 8888777777777776554333333223333333222 11111111 112222 2345556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003020 741 YAMMLIMYKRNGRFEEATRIAKQMRESGLI----SDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAA 803 (856)
Q Consensus 741 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 803 (856)
.+..+..+.+.|+.++|.+++..+.+.+-+ |...+...+...-........|+.+++-|...+
T Consensus 525 l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 525 LNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 777888889999999999999988766433 222334456666677888889999998887754
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=3e-13 Score=146.06 Aligned_cols=296 Identities=12% Similarity=0.036 Sum_probs=216.7
Q ss_pred HHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHH
Q 003020 504 GYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMA 583 (856)
Q Consensus 504 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A 583 (856)
.....|+++.|.+.+.+..+..+.+...+-....+....|+++.|.+.+.+..+....+...........+...|+++.|
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 44567888888888877777665556666666778888899999999998887653222223334457778889999999
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHHHH
Q 003020 584 KRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYG-VLIN---AFADVGNVKQAQSYFDA 659 (856)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~g~~~~A~~~~~~ 659 (856)
...++.+.+.. +-++.+...+...+...|++++|.+.+..+.+.+.. +...+. .-.. .....+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999988875 446677888889999999999999999999987643 333231 1111 11333333444455555
Q ss_pred HHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003020 660 MESAGL---PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYT-SNCMIDLYSERSMVRQAEEIFEIMKKKGD 735 (856)
Q Consensus 660 ~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 735 (856)
+.+... +.+...+..++..+...|++++|.+.+++..+....+.... .....-.....++.+.+.+.+++..+..|
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 554421 24788889999999999999999999999988543222111 11112223345788999999999999999
Q ss_pred CCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 736 ANE--FTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 736 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
.|+ ....++++.+.+.|++++|.+.|+++......|++..+.+++..+.+.|+.++|.++|++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999 888999999999999999999999654444457777788999999999999999999998765
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.8e-13 Score=135.63 Aligned_cols=223 Identities=13% Similarity=0.043 Sum_probs=161.9
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHH
Q 003020 436 YSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAE 515 (856)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 515 (856)
+.-.|+.-.|..-|+..+.....++. .|..+..+|....+.++.+..|......+|.++++|...+.++.-.+++++|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 33457777777778777766544332 26667777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 003020 516 RAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGL 595 (856)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 595 (856)
.-|+++....|.++..|-.+.-+..+.+.++++...|++..++ ++.-+..|+....++..+++++.|.+.|+..++...
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 8888888888888888888877777888888888888888776 444567777788888888888888888887776432
Q ss_pred C-----CCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 596 V-----SDC--IPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMES 662 (856)
Q Consensus 596 ~-----~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (856)
. .++ .+.-+++..-. .+++..|+.+++++++.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 111 11122222112 27788888888888876432 556778888888888888888888887654
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.2e-14 Score=149.81 Aligned_cols=285 Identities=15% Similarity=0.105 Sum_probs=209.8
Q ss_pred CHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCChHHHHHHH
Q 003020 510 HVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGA--VPDKCSYNSLIQILAGADLPHMAKRYL 587 (856)
Q Consensus 510 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~A~~~~ 587 (856)
+..+|...|.........+..+...++.+|...+++++|.++|+.+.+... .-+..+|.+.+-.+-+ +.++.++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 456777777776666566667777788888888888888888888776521 1255566666544322 2233333
Q ss_pred HHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003020 588 RKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPP 667 (856)
Q Consensus 588 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 667 (856)
.+-+-.--+..+.+|.++.++|.-+++++.|++.|+++++.+ +....+|+.+..=+.....+|.|...|+..+... +.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-ch
Confidence 332222234567788888888888888888888888888753 1256688877777777888888888888887653 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003020 668 NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM 747 (856)
Q Consensus 668 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 747 (856)
+-..|..++..|.++++++.|+-.|+++.+.++ .+.+...+++..+.+.|+.++|+.+++++...+|.|+..-...+..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 446677778888888888888888888887553 3455666777788888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 748 YKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
+...+++++|++.++++.+.-|. +...|..++..|-+.|+.+.|+.-|--+.+.
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 88888888888888888888776 7788888888888888888888888777763
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=8.2e-13 Score=141.77 Aligned_cols=286 Identities=9% Similarity=0.059 Sum_probs=221.7
Q ss_pred hhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHcCCChHHH
Q 003020 506 GERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYN--SLIQILAGADLPHMA 583 (856)
Q Consensus 506 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~A 583 (856)
...|+++.|++......+..+.....+.....+..+.|+++.|...|.++.+. .|+..... .....+...|+++.|
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 34688888887777655543333334444455558899999999999999875 45543332 336688889999999
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 003020 584 KRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDV-------VVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
...++.+.+.. +.++.....+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998876 446778888999999999999999999999987654222 1233334333444556666677
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 003020 657 FDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA 736 (856)
Q Consensus 657 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 736 (856)
++.+.+. .+.++.....+..++...|+.++|.+.+++..+. .|+.... ++.+....++.+++++..+...+..|.
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 7776443 3568888999999999999999999999998883 3555322 233344569999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
|+..+..++..|.+.+++++|.+.|+++.+.. |+...+..++.++.+.|+.++|.++|++.+.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999976 5778888999999999999999999998876
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.8e-12 Score=129.58 Aligned_cols=472 Identities=13% Similarity=0.041 Sum_probs=323.2
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 319 LSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILI 398 (856)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 398 (856)
.+..-+..+.+-+..+.++.-|.-+-++....+ -|+.....+.+++.-.|++++|..++..-.-. ..|..+.....
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~ 89 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAA 89 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHH
Confidence 355667777777778888888888888877655 45556667788888889999998888765422 44777778888
Q ss_pred HHHHccCChHHHHHHHHHHHH--cC-----------CCCCHHh-----------HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 003020 399 FLHAKNDKISMASRYFWKMKE--AN-----------LEPDIVS-----------YRTLLYAYSIRRMVCEAEELISEMDG 454 (856)
Q Consensus 399 ~~~~~~g~~~~A~~~~~~m~~--~~-----------~~~~~~~-----------~~~ll~~~~~~g~~~~A~~~~~~~~~ 454 (856)
..+.+..++++|..++..-.. .. +.+|..- +-.-...|....+.++|...|.+.+.
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 899999999999998872210 00 1111110 00111234445566777777777665
Q ss_pred CCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCC-HHHHHHHHH--------------
Q 003020 455 GGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGH-VLEAERAFI-------------- 519 (856)
Q Consensus 455 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~-------------- 519 (856)
..+. ....+..++....- ...+-+.+++.+.-. ...+. .+.-...|+
T Consensus 170 ~D~~-c~Ea~~~lvs~~ml--t~~Ee~~ll~~l~~a---------------~~~~ed~e~l~~lyel~~~k~~n~~~~~r 231 (611)
T KOG1173|consen 170 ADAK-CFEAFEKLVSAHML--TAQEEFELLESLDLA---------------MLTKEDVERLEILYELKLCKNRNEESLTR 231 (611)
T ss_pred cchh-hHHHHHHHHHHHhc--chhHHHHHHhcccHH---------------hhhhhHHHHHHHHHHhhhhhhcccccccc
Confidence 4322 11111111111110 001111111110000 00000 000011111
Q ss_pred ---HHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 003020 520 ---CCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLV 596 (856)
Q Consensus 520 ---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 596 (856)
........++.+.....+-+...+++.+..++++.+.+. .++....+-.-|..+...|+..+-..+-.++.+. .|
T Consensus 232 ~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP 309 (611)
T KOG1173|consen 232 NEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YP 309 (611)
T ss_pred CchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CC
Confidence 111111234566666777788889999999999999886 3445555555666888888888777777777775 45
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003020 597 SDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLI 676 (856)
Q Consensus 597 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 676 (856)
....+|-++.-.|...|+..+|.+.|.+....+. .=...|-.+...|+-.|..++|+..+....+. ++-...-+--++
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 5677899999999999999999999999886532 13458999999999999999999999888663 222222333455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHH
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG-------DANEFTYAMMLIMYK 749 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~ 749 (856)
.-|.+.+..+.|.++|....... +.|+...+-++-.....+.+.+|..+|+..+..- +.-..+++.|+.+|.
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 66888999999999999987743 2567778888877888899999999999877322 223457899999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003020 750 RNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMK 820 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 820 (856)
+.+++++|+..+++.+...+. ++.++..++-+|...|+.+.|++.|.+.+- +.|+..+...++.....
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 999999999999999999988 999999999999999999999999999887 69999776666655443
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.6e-11 Score=122.48 Aligned_cols=364 Identities=15% Similarity=0.098 Sum_probs=238.0
Q ss_pred CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH--HH
Q 003020 317 GSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTR--TY 394 (856)
Q Consensus 317 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~ 394 (856)
...|...+-..+..+.+.|....|+..|...... .+-.-..|..|...+. +.+.+ .... .+.+.|.. .-
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~e~~----~~l~-~~l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DIEIL----SILV-VGLPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hHHHH----HHHH-hcCcccchHHHH
Confidence 3345666666677777888888898888887754 2224445555444332 22222 2222 12222211 11
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CCCHhhHHHHHHHHH
Q 003020 395 NILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGL--EIDEYTQSALTRMYI 472 (856)
Q Consensus 395 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~ 472 (856)
--+..++....+.+++..-.+.....|.+.+...-+....+...+.++++|+.+|+++.+..+ -.|..+|+.++.+-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 123356666668888888888888888766666556666667788899999999999988742 125567777664433
Q ss_pred HcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHH
Q 003020 473 EAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLF 552 (856)
Q Consensus 473 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 552 (856)
...++. -+-......+..-+++-.-+++.|.-.++.++|...|+++.+.+|....+|+.|+.-|....+...|++-|
T Consensus 311 ~~skLs---~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSKLS---YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHHHH---HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 322211 11122233445566677777888888888999999999999888888889999999998888888899888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003020 553 DSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEP 632 (856)
Q Consensus 553 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 632 (856)
+...+.. +.|-..|..+.++|.-.+.+.-|+-.|+++.+.. +.|...|.+|..+|.+.++.++|++.|.+....| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 8888763 3367777788888888777777777777777653 4567777777777777777777777777777665 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 633 DVVVYGVLINAFADVGNVKQAQSYFDAMES----AGLPPN--AVIYNSLIKLYTKVGYLKEAQETYKLL 695 (856)
Q Consensus 633 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 695 (856)
+...+..+...|-+.++.++|...|++-++ .|...+ ...-.-|..-+.+.+++++|.......
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 556777777777777777777777766654 222211 112222444455666666665544433
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=1e-15 Score=157.09 Aligned_cols=261 Identities=16% Similarity=0.185 Sum_probs=108.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 003020 534 VMVKAYGMGRNYDKACNLFDSMTSHGAVP-DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKL 612 (856)
Q Consensus 534 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 612 (856)
.+...+...|++++|++++++......+| +...|..+.......++++.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34556666677777777775544332122 3334444555555667777777777777665422 44456666665 677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 613 GQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAG-LPPNAVIYNSLIKLYTKVGYLKEAQET 691 (856)
Q Consensus 613 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 691 (856)
+++++|..++....+. .++...+..++..+...++++++..+++.+.... .+++...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888776654 3466667777888888888888888888876532 345677788888888888999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 692 YKLLRSLEASP-DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 692 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
|+++++.. | +......++..+...|+.+++.++++......|.|+..+..++.+|...|++++|+.++++..+..|.
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 98888843 4 46667778888888888888888888887777777788888899999999999999999998888877
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 771 SDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 771 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
|+....+++.++...|+.++|..++++..+
T Consensus 247 -d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 -DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp --HHHHHHHHHHHT-----------------
T ss_pred -cccccccccccccccccccccccccccccc
Confidence 888888999999999999999888887654
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=5.4e-14 Score=146.85 Aligned_cols=291 Identities=12% Similarity=0.075 Sum_probs=197.1
Q ss_pred CHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHH
Q 003020 441 MVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFIC 520 (856)
Q Consensus 441 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 520 (856)
+..+|+..|.++... +.........++.+|...+++++|.++|+.++...|.-.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv------------------------- 387 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRV------------------------- 387 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-------------------------
Confidence 345666666663322 222335556666666666666666666666665444322
Q ss_pred HhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh
Q 003020 521 CQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDS-MTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDC 599 (856)
Q Consensus 521 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 599 (856)
.+..+|.+.+-.+-+ +-++..+.+ +... -+-.+.+|-.+.+.|.-+++.+.|++.|++++... +...
T Consensus 388 ------~~meiyST~LWHLq~----~v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~fa 455 (638)
T KOG1126|consen 388 ------KGMEIYSTTLWHLQD----EVALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFA 455 (638)
T ss_pred ------cchhHHHHHHHHHHh----hHHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-Cccc
Confidence 123334433333211 111222211 1111 12234455555555555555555555555555432 1245
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 600 IPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLY 679 (856)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 679 (856)
.+|+.+..-+.....+|.|...|+.++... +.+-.+|--++-.|.++++++.|.-.|+++.+.+ |.+.+....++..+
T Consensus 456 YayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 456 YAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQ 533 (638)
T ss_pred hhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHH
Confidence 667777777777888999999999887543 2244466667888999999999999999999886 67788888899999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
.+.|+.++|+.+|+++...+.+ ++..--..+..+...+++++|+..++++.+.-|.+..++..++..|.+.|+.+.|+.
T Consensus 534 ~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 9999999999999999886543 333333556777888999999999999999989999999999999999999999999
Q ss_pred HHHHHHHcCCCCC
Q 003020 760 IAKQMRESGLISD 772 (856)
Q Consensus 760 ~~~~~~~~~~~p~ 772 (856)
-|--+.+.+|++.
T Consensus 613 ~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 613 HFSWALDLDPKGA 625 (638)
T ss_pred hhHHHhcCCCccc
Confidence 9999999887744
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.8e-11 Score=122.20 Aligned_cols=377 Identities=12% Similarity=0.051 Sum_probs=211.2
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhh--H
Q 003020 422 LEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGY--S 499 (856)
Q Consensus 422 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~ 499 (856)
...|...+....-.+-+.|...+|++.|...+..- +-....|..+... ..+.+. ...+....+.+..-. .
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~l---it~~e~----~~~l~~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSEL---ITDIEI----LSILVVGLPSDMHWMKKF 231 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHh---hchHHH----HHHHHhcCcccchHHHHH
Confidence 34555555555555666777777777777665431 1122233322222 122222 122221112111111 1
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHc
Q 003020 500 ANIDGYGERGHVLEAERAFICCQEGK-KLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGA--VPDKCSYNSLIQILAG 576 (856)
Q Consensus 500 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~ 576 (856)
-+..++......+++..-.......+ +.+...-+....+.-...++++|+.+|+++.+... -.|..+|+.++-+-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 22444555556666666666555543 33444445555555666777777777777776521 1145566665533222
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 577 ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
..+ +..+.+-...-.+--+.|...+.+.|.-.++.++|+..|+++++.++ .....|+.|..-|....+...|++.
T Consensus 312 ~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 KSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHH
Confidence 111 11111111111123345566666667777777777777777776652 2455677777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 003020 657 FDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA 736 (856)
Q Consensus 657 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 736 (856)
++..++.+ |.|-..|-.|+++|.-.+...=|+-.|++..+..+ .|...|..|+.+|.+.++.++|+.-|.++...+..
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 77777664 56667777777777777777777777777766432 45667777777777777777777777777766666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRES----GLISDL---LSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
+..++..|+..|-+.++.++|.+.|++.++. |.. ++ .+..-|+.-+.+.+++++|..+..+.... .+...
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~e 541 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECE 541 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHH
Confidence 6667777777777777777777777766652 222 22 22233555566777777776665555442 44444
Q ss_pred HHHHHHH
Q 003020 810 TFKSLGA 816 (856)
Q Consensus 810 ~~~~l~~ 816 (856)
--++|++
T Consensus 542 eak~LlR 548 (559)
T KOG1155|consen 542 EAKALLR 548 (559)
T ss_pred HHHHHHH
Confidence 4444443
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.8e-11 Score=125.53 Aligned_cols=283 Identities=12% Similarity=0.025 Sum_probs=185.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHH
Q 003020 423 EPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANI 502 (856)
Q Consensus 423 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 502 (856)
..+.........-+...+++.+..++++.+.+.. ++....+..-+..+...|+..+-..+-.++....|..+.+|..++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 3455555555666777888888888888887754 234444444455777778877777777788888888888888888
Q ss_pred HHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH
Q 003020 503 DGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHM 582 (856)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 582 (856)
-.|.-.|+..+|++.|.++...++.-...|-..+..|.-.|..|.|+..|...-+. ++-....+--+.--|.+.++...
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 88888888888888888888887777888888888888888888888887776553 11111112223344566677777
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---C-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 583 AKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFN--V---E-PDVVVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 583 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---~-~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
|.+.|.++.... +.|+.+.+-+.-.....+.+.+|..+|+..+..- . . --..+++.+..+|.+.+++++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 777777766653 4466666666666666677777777777665210 0 0 0223456666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 657 FDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMI 711 (856)
Q Consensus 657 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 711 (856)
+++.+... +-+..++.+++-.|...|.++.|.+.|.+.+. +.|+..+-..++
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL 529 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELL 529 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHH
Confidence 66666542 45666666666666666666666666666554 345544333333
No 49
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.62 E-value=8.3e-09 Score=107.50 Aligned_cols=600 Identities=12% Similarity=0.110 Sum_probs=362.5
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHH
Q 003020 176 RALEIFEWFKRQECHELNVIHYNIMLRTLGKA--------RKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEE 247 (856)
Q Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 247 (856)
.-..+|+.+.+. ++.+...|...+..-..+ .-|+.....|++.+..-+. -+..|..-+....++|+...
T Consensus 44 ~~~~lYERal~~--lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHk-mpRIwl~Ylq~l~~Q~~iT~ 120 (835)
T KOG2047|consen 44 QRNLLYERALKE--LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHK-MPRIWLDYLQFLIKQGLITR 120 (835)
T ss_pred HHHHHHHHHHHH--CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHhcchHHH
Confidence 345566666655 455666666666332211 1233333344443321111 34577777778888888888
Q ss_pred HHHHHHHHHhCC-CCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHH
Q 003020 248 AVCWLERMNEGG-MEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNT 326 (856)
Q Consensus 248 A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (856)
-+..|++++..= +.-....|...+......|-.+.+..+|++.+. .++..-+.
T Consensus 121 tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--------------------------~~P~~~ee 174 (835)
T KOG2047|consen 121 TRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--------------------------VAPEAREE 174 (835)
T ss_pred HHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--------------------------cCHHHHHH
Confidence 888888877541 112234666677777777777888888887652 13345667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHhHHHHHHHHhcCCCHH---HHHHHHHHHHhCCCCCCH--HHHH
Q 003020 327 LIDTYGKAGQLKEASETFAQMLREG------IVPTTVTFNTMIHIYGNNDQLA---EVDSLIKKMEELHCPPDT--RTYN 395 (856)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~ll~~~~~~g~~~---~A~~~~~~~~~~~~~~~~--~~~~ 395 (856)
.|..++..+++++|.+.+...+... -+.+...|..+-....+.-+.- ....+++.+... -+|. ..|.
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~ 252 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWC 252 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHH
Confidence 7777888888888888887765431 1223345555555444432222 334444444432 2343 4678
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHHc
Q 003020 396 ILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEI-DEYTQSALTRMYIEA 474 (856)
Q Consensus 396 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 474 (856)
+|.+-|.+.|.++.|.++|++.... ..++.-|..+..+|++-....-+..+= ...+.+..+ +...
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~d----------- 318 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVD----------- 318 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhh-----------
Confidence 8888888888888888888877653 234445566666665433221111111 010111111 1111
Q ss_pred CChHHHHHHHHHH------------HhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCC------cHHHHHHHH
Q 003020 475 GMLEKSWLWFRRF------------HLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKL------TVLVFNVMV 536 (856)
Q Consensus 475 g~~~~a~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~li 536 (856)
++-.+..|+.+ +..+|.+.+.|...+..+ .|+..+-...|.++...-.| ....|..+.
T Consensus 319 --l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fa 394 (835)
T KOG2047|consen 319 --LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFA 394 (835)
T ss_pred --HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHH
Confidence 11122223322 234455666665554443 56777777778776654322 256899999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-----------------
Q 003020 537 KAYGMGRNYDKACNLFDSMTSHGAVPD---KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLV----------------- 596 (856)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~----------------- 596 (856)
+.|-..|+.+.|..+|++..+...+.- ..+|-.....-.+..+++.|+++++.+....-.
T Consensus 395 klYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 395 KLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHH
Confidence 999999999999999999987644322 234444455555677888888888776542111
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 003020 597 SDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA-VIYNSL 675 (856)
Q Consensus 597 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l 675 (856)
.+...|...++.-...|-++....+|++++...+- ++.........+-.+.-++++.++|++-+..-..|++ ..|+..
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 12334566666667778899999999999876643 4444444444555667789999999887665434555 566665
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhCCCCC--HHHHHHHHHHH
Q 003020 676 IKLYTK---VGYLKEAQETYKLLRSLEASPDVYTSNCM--IDLYSERSMVRQAEEIFEIMKKKGDAN--EFTYAMMLIMY 748 (856)
Q Consensus 676 ~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~ 748 (856)
+.-+.+ .-+.+.|..+|+++++ +.+|...-+-.| ...-.+.|....|+++++++...-++. ...|+..+.--
T Consensus 554 Ltkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~ka 632 (835)
T KOG2047|consen 554 LTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKA 632 (835)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 554443 2478999999999998 554554322222 222345688899999999987654332 23555555433
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcC-HH
Q 003020 749 KRNGRFEEATRIAKQMRESGLISDLL-SYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQP--DDFTFKSLGAVLMKCG-LE 824 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~G-~~ 824 (856)
...=-...-..+|+++++.-|..+.. ...-.+..-.+.|..+.|..+|...-+. ..| +...|.+.-..=.+.| .+
T Consensus 633 ae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 633 AEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHH
Confidence 33333456678899999874332222 2344566678899999999999887664 344 3455888888888999 44
Q ss_pred HHH
Q 003020 825 LTR 827 (856)
Q Consensus 825 ~~~ 827 (856)
.++
T Consensus 712 T~k 714 (835)
T KOG2047|consen 712 TYK 714 (835)
T ss_pred HHH
Confidence 443
No 50
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.62 E-value=6.7e-11 Score=125.75 Aligned_cols=128 Identities=10% Similarity=0.050 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 003020 672 YNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN 751 (856)
Q Consensus 672 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 751 (856)
|......+.+.+..++|...+.+..... .-....|...+..+...|..++|.+.|..+...+|.++.+..+++.++.+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 4444555555555555555555554422 123344555555555666666666666666666666666666666666666
Q ss_pred CCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 752 GRFEEATR--IAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 752 g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
|+..-|.. ++..+++.+|. ++..|..++.++.+.|+.++|.+.|+-..+
T Consensus 732 G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 65555555 66666666665 666666666666666666666666666555
No 51
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.61 E-value=3e-10 Score=120.91 Aligned_cols=408 Identities=13% Similarity=0.053 Sum_probs=249.0
Q ss_pred CCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 003020 352 IVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRT 431 (856)
Q Consensus 352 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 431 (856)
+..|...|..+.-++...|+++.+.+.|++.... .......|+.+...|...|.-..|..+.++.......|+..+--.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3445555555555566666666666666666522 223344566666666666666666666665544332233222222
Q ss_pred HH-HHHH-hcCCHHHHHHHHHHHhcC--CC--CCCHhhHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCCC
Q 003020 432 LL-YAYS-IRRMVCEAEELISEMDGG--GL--EIDEYTQSALTRMYIEAG-----------MLEKSWLWFRRFHLAGDMS 494 (856)
Q Consensus 432 ll-~~~~-~~g~~~~A~~~~~~~~~~--~~--~p~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~ 494 (856)
++ ..|. +.+..+++++.-.+++.. +. ...+..+..++-+|...- ...++.+.++++...++.+
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 22 2222 345555555555555441 10 112233333333333221 1334566677777777777
Q ss_pred chhhHHHHHHHhhcCCHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003020 495 SEGYSANIDGYGERGHVLEAERAFICCQEG-KKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQI 573 (856)
Q Consensus 495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 573 (856)
+.+...+.-.|..+++++.|.+...+..+. +..++..|..+.-++...+++.+|+.+.+...+. ...|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhh
Confidence 777777777778888888888877777776 4556777888877788888888888777776553 11111111111122
Q ss_pred HHcCCChHHHHHHHHHHHHc---------------------C-------CCCChHhHHHHHHHHHhcC---CHHHHHHHH
Q 003020 574 LAGADLPHMAKRYLRKMQEA---------------------G-------LVSDCIPYCAVISSYMKLG---QLEMAEEVY 622 (856)
Q Consensus 574 ~~~~~~~~~A~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~g---~~~~A~~~~ 622 (856)
-...++.++++.....++.. | ..-.+.++..+..-....+ ..+..
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---- 632 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---- 632 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc----
Confidence 22234444444333332211 0 0001111222111111111 01111
Q ss_pred HHHHHCC--CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 623 KDMIRFN--VEPD------VVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKL 694 (856)
Q Consensus 623 ~~~~~~~--~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 694 (856)
+.+.- ..|+ ...|......+.+.++.++|...+.+..+.. +.....|...+..+...|..++|.+.|..
T Consensus 633 --Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 --LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred --cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 11101 1233 2356667778889999999999999988763 66778888888999999999999999999
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 695 LRSLEASPD-VYTSNCMIDLYSERSMVRQAEE--IFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 695 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
....+ |+ +.....+..++.+.|+..-|.. ++..+.+.+|.++..|..++..+.+.|+.+.|.+.|+-+.+....
T Consensus 710 Al~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 710 ALALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHhcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 88744 54 5577889999999998877777 999999999999999999999999999999999999999988765
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=1.9e-12 Score=139.77 Aligned_cols=278 Identities=13% Similarity=0.056 Sum_probs=214.4
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 003020 540 GMGRNYDKACNLFDSMTSHGAVPDK-CSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMA 618 (856)
Q Consensus 540 ~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 618 (856)
...|+++.|.+.+.+..+. .|+. ..+-....+....|+++.|.+.+.++.+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4679999999999988775 3443 344555677888999999999999988764333333445567888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHH
Q 003020 619 EEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYN-SLIKLY---TKVGYLKEAQETYKL 694 (856)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~---~~~g~~~~A~~~~~~ 694 (856)
...++.+.+.. +.+...+..+...+.+.|++++|.+.+..+.+.++. +...+. .-..++ ...+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999976 347778889999999999999999999999998744 333332 112222 333344444455555
Q ss_pred HHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 695 LRSLEA---SPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTY--AMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 695 ~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
+.+... +.+...+..++..+...|+.++|.+.+++..+..|++.... ..........++.+.+++.+++.++..|
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 555322 13778888999999999999999999999999888776432 2222233446788999999999999988
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 770 ISDL--LSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 770 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
. |+ ....++++.+.+.|+|++|.+.|++.......|+...+..+...+.+.|
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g 384 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAG 384 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcC
Confidence 7 88 7888999999999999999999996444446899999999999999999
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=4.2e-15 Score=152.52 Aligned_cols=261 Identities=18% Similarity=0.179 Sum_probs=114.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHh-cC-CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003020 500 ANIDGYGERGHVLEAERAFICCQ-EG-KKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGA 577 (856)
Q Consensus 500 ~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 577 (856)
.++..+.+.|++++|.+++.... .. ++.++..|..+.......+++++|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666777777777777775433 33 3556777777777888888888888888888876433 45556666666 688
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 578 DLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFN-VEPDVVVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 578 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
+++++|..++....+.. +++..+...+..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887766543 456667778888899999999999999987543 345778888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 003020 657 FDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA 736 (856)
Q Consensus 657 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 736 (856)
+++..+.. |.|......++..+...|+.+++.++++...+.. +.+...+..+..+|...|++++|+..+++.....|.
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 99999874 5567888899999999999999888888877643 344456778899999999999999999999998899
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
|+.+...++.++...|+.++|.++++++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999988765
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=9.1e-12 Score=133.73 Aligned_cols=122 Identities=11% Similarity=-0.017 Sum_probs=67.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHH
Q 003020 404 NDKISMASRYFWKMKEANLEPDIVS-YRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWL 482 (856)
Q Consensus 404 ~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 482 (856)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+.+.++.+.. |+.....
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~----------------- 155 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPV----------------- 155 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHH-----------------
Confidence 577777776666554431 12222 2222333456666677766666665432 2221111
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 003020 483 WFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAV 561 (856)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 561 (856)
.......+...|+++.|...++...+..|.++.....+...|.+.|++++|.+++..+.+.+..
T Consensus 156 ---------------~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 156 ---------------EITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG 219 (398)
T ss_pred ---------------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 0111334444555555555555555555666677777777777777777777777777776544
No 55
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=4.1e-11 Score=115.29 Aligned_cols=222 Identities=12% Similarity=0.113 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHH
Q 003020 615 LEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKL-----YTKVGYLKEAQ 689 (856)
Q Consensus 615 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-----~~~~g~~~~A~ 689 (856)
-+.|++++-.+.+. -| ..-..++-.|.+++++++|..+.+.+.-. .|-......+..+ ........-|.
T Consensus 270 gEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 270 GEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred CccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 45555555555432 11 22233444566666666666665554211 1222222111111 11112334455
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003020 690 ETYKLLRSLEASPDVY-TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESG 768 (856)
Q Consensus 690 ~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 768 (856)
+.|+.+-+.+...|.. --.++...+.-..++++.+..++.+..-...|...-..++.+++..|++.+|+++|-++....
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ 423 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPE 423 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChh
Confidence 5555443333332222 223444445555566666666666665554444444556666666677777766666655444
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcC--------HHHHHhhcchhhHHHH
Q 003020 769 LISDLLSY-NNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFT-FKSLGAVLMKCG--------LELTRKKNAQSGLQAW 838 (856)
Q Consensus 769 ~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~G--------~~~~~~~~~~~~~~~~ 838 (856)
++ +..+| ..++++|.+.|+++-|..++- +..-..+... ...+.+.|.++| ++++- ..+|.|+.|
T Consensus 424 ik-n~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE--~lDP~pEnW 497 (557)
T KOG3785|consen 424 IK-NKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE--ILDPTPENW 497 (557)
T ss_pred hh-hhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--ccCCCcccc
Confidence 44 33444 344566666666666644433 3222223333 444555566666 22221 245666666
Q ss_pred HHHHhhHhhh
Q 003020 839 MSTLSSVIEE 848 (856)
Q Consensus 839 ~~~~~~~~~~ 848 (856)
..-=+.|++.
T Consensus 498 eGKRGACaG~ 507 (557)
T KOG3785|consen 498 EGKRGACAGL 507 (557)
T ss_pred CCccchHHHH
Confidence 6655555554
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=3.3e-11 Score=118.83 Aligned_cols=293 Identities=12% Similarity=0.089 Sum_probs=228.3
Q ss_pred hcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 003020 507 ERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRY 586 (856)
Q Consensus 507 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~ 586 (856)
..|++..|++...+..+..+.....|..-+.+-.+.|+.+.+-.++.+..+.--.++....-+........|+++.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 36777777777777666666667777777777778888888888888887764445555666677777888888888888
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 587 LRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDV-------VVYGVLINAFADVGNVKQAQSYFDA 659 (856)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (856)
+.++.+.+ +.++.+......+|.+.|++.+...++..+.+.+.-.|. .+|+.+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 88888775 345667778888888888888888888888887754443 4666666666666666665667776
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Q 003020 660 MESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEF 739 (856)
Q Consensus 660 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 739 (856)
.... ...++..-.+++.-+.+.|+.++|.++.....+.+..|.. +..-.+.+.++...=++..++..+..|.++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 6443 3456667778888899999999999999999887766662 2223456788889999999999988899999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003020 740 TYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD 807 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 807 (856)
.+.+|+..|.+.+.|.+|.+.++.+++.+ |+..+|+.++.++.+.|+..+|.+++++.+..-..|+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999888875 6889999999999999999999999999876434443
No 57
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.56 E-value=1.4e-09 Score=118.55 Aligned_cols=630 Identities=13% Similarity=0.038 Sum_probs=388.6
Q ss_pred cHHHHhhHhhhhc--C------hhHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003020 147 DLDEALKPWAENL--S------NKERSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWD 218 (856)
Q Consensus 147 ~~~~al~~~~~~~--~------~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 218 (856)
+...++..|-+.+ + ...++.+++.--+..+|...|+.+.+.+ ..++..+-.....|++..+|+.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3566777665522 2 2245667776668889999999998875 5677889999999999999999998854
Q ss_pred HHHhCCCC-cChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcccc
Q 003020 219 EMSVKGIV-PINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLR 297 (856)
Q Consensus 219 ~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 297 (856)
..-+..+. .-...|..++-.|...++...|+..|+...+..+. |...|..++.+|..+|.+..|.++|.+....
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L---- 625 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL---- 625 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc----
Confidence 43332211 11224555556678899999999999999887543 7789999999999999999999999887531
Q ss_pred CCcchhhhhhhhccCCcCCCCcCHhHHHH--HHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHhHHHHHHHHhcC
Q 003020 298 HGEDTKTMIGKVENGSHVNGSLSSYTYNT--LIDTYGKAGQLKEASETFAQMLREG------IVPTTVTFNTMIHIYGNN 369 (856)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~ll~~~~~~ 369 (856)
+ | ...|.. .....+..|.+.+|+..+......- ..--..++..+...+...
T Consensus 626 ------------------r--P-~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~ 684 (1238)
T KOG1127|consen 626 ------------------R--P-LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAIT 684 (1238)
T ss_pred ------------------C--c-HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 1 1 122222 2233466788899988888765421 111122333333333334
Q ss_pred CCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHH-------------------HH----ccCCh---H---HHHHH
Q 003020 370 DQLAEVDSLIKKMEE-------LHCPPDTRTYNILIFL-------------------HA----KNDKI---S---MASRY 413 (856)
Q Consensus 370 g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~-------------------~~----~~g~~---~---~A~~~ 413 (856)
|=..++...++..++ .....+...|-.+.++ +. +.+.. | -+.+.
T Consensus 685 gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c 764 (1238)
T KOG1127|consen 685 GFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYEC 764 (1238)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 434444444443332 1111122222222111 11 11111 1 01111
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHh--------cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHH
Q 003020 414 FWKMKEANLEPDIVSYRTLLYAYSI--------RRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFR 485 (856)
Q Consensus 414 ~~~m~~~~~~~~~~~~~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 485 (856)
+-.-++ ...+..+|..++.-|.+ ..+...|+..+.+.++.. ..+..+++.+.-. ...|.+.-+...|-
T Consensus 765 ~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfI 840 (1238)
T KOG1127|consen 765 GIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFI 840 (1238)
T ss_pred hhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhh
Confidence 111111 11234566666665554 123346888888887643 2256677766655 66688888888888
Q ss_pred HHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCC
Q 003020 486 RFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTS----HGAV 561 (856)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~ 561 (856)
+.....|.....|.+++..+.+..+++.|...|.......|.+...|-.........|+.-++..+|..--+ .|-.
T Consensus 841 ks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka 920 (1238)
T KOG1127|consen 841 KSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKA 920 (1238)
T ss_pred hhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccccc
Confidence 888888999999999999999999999999999999999999999999988888889998888888876222 2333
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHH---------cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC
Q 003020 562 PDKCSYNSLIQILAGADLPHMAKRYLRKMQE---------AGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRF-NVE 631 (856)
Q Consensus 562 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 631 (856)
|+..-+..........|+.+.-+...+++-. .+.+.+...|..........+.+..|.+...+.+.. ..+
T Consensus 921 ~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k 1000 (1238)
T KOG1127|consen 921 KKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELK 1000 (1238)
T ss_pred chhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555655544433333211 134556677888888888888888888877775421 012
Q ss_pred CCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC-HH
Q 003020 632 PDVVVYGV----LINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS-LEASPD-VY 705 (856)
Q Consensus 632 ~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~-~~ 705 (856)
-|...|+. +.+.++..|.++.|..-+...... .+...-..-+. ..-.++++++.+.|+++.. .+...| ++
T Consensus 1001 ~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e---vdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vv 1076 (1238)
T KOG1127|consen 1001 LDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME---VDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVV 1076 (1238)
T ss_pred HhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh---HHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhh
Confidence 34445553 344455667777665544332111 11111111111 1447899999999999887 233344 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSY---NNVLGL 782 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~ 782 (856)
....++-+....+..+.|...+-+.....+++..+...|...+.-..+-..-..+.++..+. +......| ...-..
T Consensus 1077 Ll~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~kl-~k~e~~~~~~~ll~e~i 1155 (1238)
T KOG1127|consen 1077 LLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEKL-LKLEWFCWPPGLLKELI 1155 (1238)
T ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHh-hhhHHhccChhHHHHHH
Confidence 44555556677888889998888888888888887777777666555444444444444332 11011111 233356
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003020 783 YAVDGRFKDVIGTFKDMVNAAIQP-DDFTFKSLG 815 (856)
Q Consensus 783 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 815 (856)
|.++||-.-..+.+++.+-. -| |+..|..|-
T Consensus 1156 ~~~~~r~~~vk~~~qr~~h~--~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1156 YALQGRSVAVKKQIQRAVHS--NPGDPALWSLLS 1187 (1238)
T ss_pred HHHhhhhHHHHHHHHHHHhc--CCCChHHHHHHH
Confidence 78889988889999988773 34 444454443
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=5.4e-12 Score=120.22 Aligned_cols=320 Identities=12% Similarity=0.122 Sum_probs=237.6
Q ss_pred hcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCCh
Q 003020 507 ERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDK------CSYNSLIQILAGADLP 580 (856)
Q Consensus 507 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~~~~ 580 (856)
-..+.++|...|..+.+..+.+..+.-++++.|...|..|.|+.+.+.+.++ ||. .....|..-|...|-+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 3566778888888888888888888888888998999999999988888775 432 2345566778888999
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 003020 581 HMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDV----VVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 581 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
|.|+.+|..+.+.+ ..-......|+..|-...++++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999998888754 223455777888999999999999999998887654432 2455566666677889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 003020 657 FDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA 736 (856)
Q Consensus 657 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 736 (856)
+.+..+.+ +..+..--.+++.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++...++.++.+..+.
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 99998875 45556666788899999999999999999998765445667888999999999999999999999887533
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYA---VDGRFKDVIGTFKDMVNAAIQPDDFTFKS 813 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 813 (856)
+..-..+...-....-.+.|...+.+-+... |+...++-++.... ..|++.+-+.++++|+...++-++ .|
T Consensus 282 -~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~-~Y-- 355 (389)
T COG2956 282 -ADAELMLADLIELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKP-RY-- 355 (389)
T ss_pred -ccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcC-Cc--
Confidence 3334445554445555667776666666553 67777777776654 446688888899999875433222 12
Q ss_pred HHHHHHHcCHHHHHhhcchhhHHHHHH
Q 003020 814 LGAVLMKCGLELTRKKNAQSGLQAWMS 840 (856)
Q Consensus 814 l~~~~~~~G~~~~~~~~~~~~~~~~~~ 840 (856)
-|.+||+..-.-.+..|+.+.|.+
T Consensus 356 ---RC~~CGF~a~~l~W~CPsC~~W~T 379 (389)
T COG2956 356 ---RCQNCGFTAHTLYWHCPSCRAWET 379 (389)
T ss_pred ---eecccCCcceeeeeeCCCcccccc
Confidence 256777665555667777777764
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.55 E-value=9e-10 Score=115.02 Aligned_cols=433 Identities=15% Similarity=0.169 Sum_probs=278.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003020 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLH 401 (856)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 401 (856)
.|....+-.+...|+-++|....+.-++.++. +.+.|..+.-.+....++++|++.|..+...+ +.|...+.-+.-.-
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQ 119 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 44445555566778888888888887776554 66788888777777888888888888888765 56777888777777
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCC-CCCCHhhHHHH------HHHHHHc
Q 003020 402 AKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGG-LEIDEYTQSAL------TRMYIEA 474 (856)
Q Consensus 402 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l------~~~~~~~ 474 (856)
++.|+++........+.+.. +.....|..+..++.-.|++..|..+++...+.. -.|+...+... .....+.
T Consensus 120 ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~ 198 (700)
T KOG1156|consen 120 IQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEA 198 (700)
T ss_pred HHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 78888888877777777653 2345677778888888888888888888876654 23454443322 2344566
Q ss_pred CChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHH-HHHH
Q 003020 475 GMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKAC-NLFD 553 (856)
Q Consensus 475 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~ 553 (856)
|.+++|.+.+......--.....--.-++.+.+.+++++|..++......+|.+...|..+..++.+-.+.-+++ .+|.
T Consensus 199 g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~ 278 (700)
T KOG1156|consen 199 GSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYA 278 (700)
T ss_pred ccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 777777666554432221222222334778888999999999999999888888888888888876333333444 5666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH----HCC
Q 003020 554 SMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMI----RFN 629 (856)
Q Consensus 554 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~ 629 (856)
...+. .+........=+.......-.+..-+++...++.|+++ ++..+.+.|-.-...+--.++.-.+. ..|
T Consensus 279 ~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~ 354 (700)
T KOG1156|consen 279 ILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTG 354 (700)
T ss_pred HHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhccccc
Confidence 55543 11111111111111112333445556677777777654 33344433322221111111111111 111
Q ss_pred ----------CCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 630 ----------VEPDVVVYGV--LINAFADVGNVKQAQSYFDAMESAGLPPNA-VIYNSLIKLYTKVGYLKEAQETYKLLR 696 (856)
Q Consensus 630 ----------~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 696 (856)
-+|....|.. ++..+-+.|+++.|..+++..+.. .|+. ..|..-.+.+.+.|++++|..++++..
T Consensus 355 ~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~ 432 (700)
T KOG1156|consen 355 MFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ 432 (700)
T ss_pred CCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 1456665554 566677899999999999999876 4554 567777788999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CC----HHHHHHH--HHHHHHcCCHHHHHHHHHHH
Q 003020 697 SLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD---AN----EFTYAMM--LIMYKRNGRFEEATRIAKQM 764 (856)
Q Consensus 697 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~----~~~~~~l--~~~~~~~g~~~~A~~~~~~~ 764 (856)
+.+. +|...-..-+.-..++++.++|.++.....+.+. .| .-.|..+ +.+|.++|++-+|++-+..+
T Consensus 433 elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 433 ELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 8664 7776655666667788999999999988877652 11 1134333 56788888887776655444
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=3.2e-10 Score=109.21 Aligned_cols=439 Identities=12% Similarity=0.052 Sum_probs=215.5
Q ss_pred cCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHH
Q 003020 171 QSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVC 250 (856)
Q Consensus 171 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 250 (856)
..++..|+.+++.....+ -+....+-..+...+.+.|++++|...|...... -.|+...+..+.-++.-.|.+.+|..
T Consensus 35 ~rDytGAislLefk~~~~-~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLD-REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred cccchhHHHHHHHhhccc-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHH
Confidence 356777777777665443 1111223333455666777777777777666553 33466666667666667777777766
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHH
Q 003020 251 WLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDT 330 (856)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 330 (856)
+-.+..+ ++..-..+.+.-.+.++-++-..+.+.+.+ +..---+|...
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD---------------------------~~EdqLSLAsv 160 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD---------------------------TLEDQLSLASV 160 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh---------------------------hHHHHHhHHHH
Confidence 6555432 222233344455566666666666555432 01112223333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH-HHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH
Q 003020 331 YGKAGQLKEASETFAQMLREGIVPTTVTFNTMI-HIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISM 409 (856)
Q Consensus 331 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 409 (856)
....-.+.+|+++|.+.+.. .|+....|..+ -+|.+..-++-+.+++.-.++. ++.++.+-|.......+.=.-..
T Consensus 161 hYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ 237 (557)
T KOG3785|consen 161 HYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRT 237 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccch
Confidence 33344566777777777654 23444444433 2344666666666666666633 34445555555544444322223
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHH
Q 003020 410 ASRYFWKMKEANLEPDIVSYRTLLYAYSIR-----RMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWF 484 (856)
Q Consensus 410 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 484 (856)
|..-...+.+.+-+ . | ..+.-.++. ..-+.|++++--+
T Consensus 238 ae~E~k~ladN~~~-~---~-~f~~~l~rHNLVvFrngEgALqVLP~L-------------------------------- 280 (557)
T KOG3785|consen 238 AEDEKKELADNIDQ-E---Y-PFIEYLCRHNLVVFRNGEGALQVLPSL-------------------------------- 280 (557)
T ss_pred hHHHHHHHHhcccc-c---c-hhHHHHHHcCeEEEeCCccHHHhchHH--------------------------------
Confidence 33333333322110 0 0 111111111 1222333332222
Q ss_pred HHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc-------cCCHHHHHHHHHHHHh
Q 003020 485 RRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGM-------GRNYDKACNLFDSMTS 557 (856)
Q Consensus 485 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~~A~~~~~~m~~ 557 (856)
. ..-+++..+++-.|.+++++.+|..+..... |.++.-|..-.-.+.. .....-|.+.|+-.-+
T Consensus 281 ---~---~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~ 351 (557)
T KOG3785|consen 281 ---M---KHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGE 351 (557)
T ss_pred ---H---hhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc
Confidence 2 2334555666667777777777776655443 3333333322222222 2334556666665554
Q ss_pred CCCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003020 558 HGAVPDKC-SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVV 636 (856)
Q Consensus 558 ~~~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 636 (856)
.+..-|.. .-.++...+.-..++|+++..+..+..--...|.. -..+..+++..|.+.+|.++|-++....++ |..+
T Consensus 352 Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~ 429 (557)
T KOG3785|consen 352 SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIK-NKIL 429 (557)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHH
Confidence 44332221 12333444444455666666665555443222332 233556666667777777776655433222 3334
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 637 YG-VLINAFADVGNVKQAQSYFDAMESAGLPPNAVI-YNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 637 ~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
|. .+.++|.+.++++-|+.++-++.. +.+..+ ...+.+-|-+.+.+--|-+.|+.+..
T Consensus 430 Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 430 YKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 43 344556666666666655443321 222222 23334455566666666666665555
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.52 E-value=4.7e-09 Score=109.82 Aligned_cols=468 Identities=12% Similarity=0.106 Sum_probs=299.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhcc
Q 003020 232 YGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVEN 311 (856)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (856)
|..++++| ..++|...++..+.+++. .+--..+....+-.+...|+-++|.........
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr------------------- 69 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR------------------- 69 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhc-------------------
Confidence 33444444 566777788887777763 222233444444556677888888877765431
Q ss_pred CCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH
Q 003020 312 GSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDT 391 (856)
Q Consensus 312 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 391 (856)
+...+.+.|..++-.+....++++|+..|...+..+. .|...+-.+.-.-...|+++.....-.+..+.. +...
T Consensus 70 ----~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~r 143 (700)
T KOG1156|consen 70 ----NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQR 143 (700)
T ss_pred ----cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhH
Confidence 3344668888888888888888899998888887542 245566655555556677777777766666543 4455
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCHHhHHHHH------HHHHhcCCHHHHHHHHHHHhcCCCCCCHhhH
Q 003020 392 RTYNILIFLHAKNDKISMASRYFWKMKEAN-LEPDIVSYRTLL------YAYSIRRMVCEAEELISEMDGGGLEIDEYTQ 464 (856)
Q Consensus 392 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 464 (856)
..|..+.-++.-.|++..|..+.+...+.. -.|+...+.... ......|..++|++.+..-... +.......
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~ 222 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHh
Confidence 677888888888888888888888877543 135554444332 2345667778887776654332 11122233
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHH-HHHHHHhcCCCCcHHHHHHHHHHHHccC
Q 003020 465 SALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAE-RAFICCQEGKKLTVLVFNVMVKAYGMGR 543 (856)
Q Consensus 465 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~li~~~~~~g 543 (856)
-.-...+.+.+++++|..++..+...+|.+...+..+..++++-....++. .+|....+..+.....-..=++......
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~ee 302 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEE 302 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcch
Confidence 445677888999999999999999999999888888888887444444444 6676666655433222222222222223
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH----cC----------CCCChHhH--HHHHH
Q 003020 544 NYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQE----AG----------LVSDCIPY--CAVIS 607 (856)
Q Consensus 544 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~----------~~~~~~~~--~~l~~ 607 (856)
-.+..-.++..+.+.|+++-...+.+ .+-.....+-..++...+.. .| -+|....| --++.
T Consensus 303 l~~~vdkyL~~~l~Kg~p~vf~dl~S---Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laq 379 (700)
T KOG1156|consen 303 LKEIVDKYLRPLLSKGVPSVFKDLRS---LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQ 379 (700)
T ss_pred hHHHHHHHHHHHhhcCCCchhhhhHH---HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHH
Confidence 33444456666777777654333333 23222222211122211111 11 13444444 44567
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003020 608 SYMKLGQLEMAEEVYKDMIRFNVEPDVV-VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLK 686 (856)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 686 (856)
.|-..|+++.|...++.++.. .|+.. .|..-.+.+...|.+++|..++++..+.+ .+|...=.--+.-..++.+.+
T Consensus 380 h~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 380 HYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccH
Confidence 788899999999999999875 56654 77777788999999999999999999876 566665556777788999999
Q ss_pred HHHHHHHHHHhCCCC--CCHH----HHHHH--HHHHHHcCCHHHHHHHHHHHHhC
Q 003020 687 EAQETYKLLRSLEAS--PDVY----TSNCM--IDLYSERSMVRQAEEIFEIMKKK 733 (856)
Q Consensus 687 ~A~~~~~~~~~~~~~--p~~~----~~~~l--~~~~~~~g~~~~A~~~~~~~~~~ 733 (856)
+|.++.....+.|.. .+.. .|-.+ +.+|.+.|++..|++-|..+.+.
T Consensus 457 eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 457 EAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred HHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999888776541 1111 22222 45677888888888777666543
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=1e-10 Score=125.76 Aligned_cols=588 Identities=13% Similarity=0.084 Sum_probs=328.1
Q ss_pred HhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCc
Q 003020 183 WFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEP 262 (856)
Q Consensus 183 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 262 (856)
.+...| ..|+-++|.++|.-|+..|+.+.|- +|.-|.-++.+.+...++.++.+....++.+.+. .|
T Consensus 15 ~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep 81 (1088)
T KOG4318|consen 15 LHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EP 81 (1088)
T ss_pred HHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CC
Confidence 333344 7889999999999999999999888 8988888777778888999998888888777664 56
Q ss_pred cHHHHHHHHHHHHhcCChhH---HHHHHHHHhhhccccCCcc--hhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCH
Q 003020 263 DEVTMGIVVQMYKKAGEFQK---AEEFFKKWSSRESLRHGED--TKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQL 337 (856)
Q Consensus 263 ~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 337 (856)
-..+|..+..+|...||+.- .++.++.+.. .-...+.. ....+..+ ...+..-||.. +.+.-..-.|-+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~-sfs~~Gvgs~e~~fl~k~--~c~p~~lpda~---n~illlv~eglw 155 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQ-SFSDHGVGSPERWFLMKI--HCCPHSLPDAE---NAILLLVLEGLW 155 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHh-hhhhhccCcHHHHHHhhc--ccCcccchhHH---HHHHHHHHHHHH
Confidence 77899999999999998655 3332222110 00000000 00000000 01122222222 233444455666
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 003020 338 KEASETFAQMLREGIVPTTVTFNTMIHIYGN-NDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWK 416 (856)
Q Consensus 338 ~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 416 (856)
+.+++++..+...... . ++...++-+.. ...+++...+.....+ .|+..+|.++++.-.-.|+.+.|..++.+
T Consensus 156 aqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 6676666655332111 1 11112333322 2233333333333332 58999999999999999999999999999
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 003020 417 MKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSE 496 (856)
Q Consensus 417 m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (856)
|.++|++-+..-|..|+-+ .++..-++.++.-|.+.|+.|+..|+...+..+...|....+.. +.....
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~sq~~h 298 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GSQLAH 298 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------ccchhh
Confidence 9999998888877777766 78888888999999999999999999988887777555322211 111111
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHH------------HH-hcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--C
Q 003020 497 GYSANIDGYGERGHVLEAERAFI------------CC-QEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGA--V 561 (856)
Q Consensus 497 ~~~~l~~~~~~~g~~~~A~~~~~------------~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~ 561 (856)
.+.+-.....-.| ..|.+..+ +. .-.......+|...+.. ..+|.-++..++-..+..--. .
T Consensus 299 g~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s 375 (1088)
T KOG4318|consen 299 GFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDS 375 (1088)
T ss_pred hhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccC
Confidence 2222222222222 11111111 10 00111122444433332 235666666666666543211 1
Q ss_pred C-CHHHHHHHHHHHHcCCChHHHHHHHH--HHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC---
Q 003020 562 P-DKCSYNSLIQILAGADLPHMAKRYLR--KMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRF----NVE--- 631 (856)
Q Consensus 562 p-~~~~~~~ll~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--- 631 (856)
+ +...|..++.-|.+.-+......++. +.++.. .+....-.+.....+. +...+.+-+...... ...
T Consensus 376 ~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~ 452 (1088)
T KOG4318|consen 376 GQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWP 452 (1088)
T ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccch
Confidence 1 22334333333332211111111111 111100 0000000011111111 111111111111100 000
Q ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH
Q 003020 632 ----PDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL--EASPDVY 705 (856)
Q Consensus 632 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~ 705 (856)
+-...-+.++..++..-+..+++..-++....-+ + ..|..|++-++...+.+.|..++++.... .+..|..
T Consensus 453 ~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~ 529 (1088)
T KOG4318|consen 453 LIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLP 529 (1088)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccH
Confidence 1112334555666666566666654444433221 2 57889999999999999999998887552 2234556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKG---DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGL 782 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 782 (856)
-+..+.+.+.+.+....+..+++++.+.- +....++..+.......|+.+.-.+.++-+...|..- + .-+..+
T Consensus 530 ~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e---t-gPl~~v 605 (1088)
T KOG4318|consen 530 LMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE---T-GPLWMV 605 (1088)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh---c-ccceEE
Confidence 67788889999999999999999887744 2224466677777788888888888888777776552 1 334455
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003020 783 YAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMK 820 (856)
Q Consensus 783 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 820 (856)
..+.++...|.++++...+. ++|.+..-..+-+...+
T Consensus 606 hLrkdd~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~k 642 (1088)
T KOG4318|consen 606 HLRKDDQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVYK 642 (1088)
T ss_pred EeeccchhhhhhcchHHHHH-hcCChHHHHHHHHHHHh
Confidence 66677777777777665443 45555444444444443
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1e-10 Score=111.59 Aligned_cols=274 Identities=16% Similarity=0.111 Sum_probs=148.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHH
Q 003020 404 NDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLW 483 (856)
Q Consensus 404 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 483 (856)
.++.++|.+.|-+|.+.. +.+..+.-+|...|-+.|..+.|+++.+.+.+.. |. |+..-
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dl-T~~qr---------------- 106 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DL-TFEQR---------------- 106 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CC-chHHH----------------
Confidence 355666666666666532 1233444556666666666666666666665431 11 11000
Q ss_pred HHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 003020 484 FRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPD 563 (856)
Q Consensus 484 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 563 (856)
.-+...++.-|...|-++.|+.+|....+.+..-..+...++..|....+|++|+++-+++.+.+-.+.
T Consensus 107 -----------~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 107 -----------LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred -----------HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 012334556667777777777777777766555677777888888888888888888888777654443
Q ss_pred HH----HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003020 564 KC----SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGV 639 (856)
Q Consensus 564 ~~----~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.. .|--+...+....+.+.|...+.+..+... ..+..--.+.+.+...|+++.|++.++.+.+.++.--..+...
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 22 233333344445566666666666555431 1222333445555666666666666666665543333445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003020 640 LINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLY 714 (856)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 714 (856)
|..+|.+.|+.++....+.++.+.. ++...-..+.+.-....-.+.|...+.+-+. -.|+...+..+++.-
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhh
Confidence 6666666666666666666665542 2222223333333333333444444333222 235555555555543
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=7.5e-10 Score=119.21 Aligned_cols=247 Identities=15% Similarity=0.124 Sum_probs=149.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHH
Q 003020 568 NSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFN--VEPDVVVYGVLINAFA 645 (856)
Q Consensus 568 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~ 645 (856)
+.++..|++.-+..+++..-++....-+ ...|..|+.-+....+.+.|....++..... ...|..-+..+.+.+.
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 3444555555555555543333332211 1458888888888888999998888876432 2345566777888888
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 646 DVGNVKQAQSYFDAMESAG-LPPN-AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQA 723 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 723 (856)
+.+....+..++.++.+.- ..|+ ..++.-+.+.....|+.+.-.+.++-+...|+.-+ .-++....+.++...|
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a 615 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAA 615 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhh
Confidence 8899999999998886631 1232 34555666667778888887777777666554331 1222233344555555
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHH---------------------HHHHcCCHHHHHHHHHHH--HHcC----------CC
Q 003020 724 EEIFEIMKKKGDANEFTYAMMLI---------------------MYKRNGRFEEATRIAKQM--RESG----------LI 770 (856)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~l~~---------------------~~~~~g~~~~A~~~~~~~--~~~~----------~~ 770 (856)
.+.++...+...+.+.....+.. .|.+.|+..+|.++.+.- .-.. +.
T Consensus 616 ~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~ 695 (1088)
T KOG4318|consen 616 QEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIV 695 (1088)
T ss_pred hhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccc
Confidence 55555444444333332222222 245555555555543310 0000 00
Q ss_pred C---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHH
Q 003020 771 S---------DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCGLE 824 (856)
Q Consensus 771 p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G~~ 824 (856)
| +..-..-++..|.+.|+++.|..+|.++. +.|...+...|...|.+.-.+
T Consensus 696 ~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~e 755 (1088)
T KOG4318|consen 696 PLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEE 755 (1088)
T ss_pred cHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchh
Confidence 0 11222347778999999999999999987 799999999999998887733
No 65
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.50 E-value=1.2e-09 Score=118.90 Aligned_cols=561 Identities=11% Similarity=-0.019 Sum_probs=307.7
Q ss_pred CHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHH
Q 003020 209 KWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFK 288 (856)
Q Consensus 209 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 288 (856)
+...|...|-+.++.++. -...|..|+..|+...+...|.+.|+++.+.. ..|..........|....+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 456666677666665544 55678888888887778888888888888764 2256677777888888888888888743
Q ss_pred HHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc
Q 003020 289 KWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGN 368 (856)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 368 (856)
...+.. ....-...|-...-.|...++...|+.-|+..++..++ |...|..++.+|.+
T Consensus 551 ~~~qka---------------------~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~ 608 (1238)
T KOG1127|consen 551 RAAQKA---------------------PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPE 608 (1238)
T ss_pred HHhhhc---------------------hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHh
Confidence 332110 00001122333444455666666666666666665433 55566666666666
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc------CCCCCHHhHHHHHHHHHhcCCH
Q 003020 369 NDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEA------NLEPDIVSYRTLLYAYSIRRMV 442 (856)
Q Consensus 369 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~ll~~~~~~g~~ 442 (856)
.|.+..|.++|.++...+ |.+...---..-..+..|++.+|...+...... +...-..++..+...+...|-.
T Consensus 609 sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~ 687 (1238)
T KOG1127|consen 609 SGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQ 687 (1238)
T ss_pred cCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 666666666666655442 111111111223334556666666666554421 0011122333333333333333
Q ss_pred HHHHHHHHHHh-------cCCCCCCHhhHHHHHHH-----------------------HHHcCCh---H---HHHHHHHH
Q 003020 443 CEAEELISEMD-------GGGLEIDEYTQSALTRM-----------------------YIEAGML---E---KSWLWFRR 486 (856)
Q Consensus 443 ~~A~~~~~~~~-------~~~~~p~~~~~~~l~~~-----------------------~~~~g~~---~---~a~~~~~~ 486 (856)
.+|.+.+++.+ ......+...+..+..+ ....+.. | -+.+.+-.
T Consensus 688 ~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~ 767 (1238)
T KOG1127|consen 688 KKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA 767 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH
Confidence 33333332222 11111111111111111 1111111 1 00011100
Q ss_pred HHhcCCCCchhhHHHHHHHhh--------cCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 003020 487 FHLAGDMSSEGYSANIDGYGE--------RGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSH 558 (856)
Q Consensus 487 ~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 558 (856)
- ..-...+..|.+++..|.+ ..+...|+..+.+.......+...||.+.-. ...|++.-|..-|-+....
T Consensus 768 h-lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s 845 (1238)
T KOG1127|consen 768 H-LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS 845 (1238)
T ss_pred H-HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc
Confidence 0 0011235667777655544 2233467777888777777788888888766 6667777777777665554
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCH
Q 003020 559 GAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMI----RFNVEPDV 634 (856)
Q Consensus 559 ~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 634 (856)
.+....+|..+.-.+....+++.|...|....... +.+...|......-...|+.-++..+|...- ..|--++.
T Consensus 846 -ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f 923 (1238)
T KOG1127|consen 846 -EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKF 923 (1238)
T ss_pred -cccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchh
Confidence 23366778888888888899999999998887754 3455556666666667788888888877632 22333455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCH
Q 003020 635 VVYGVLINAFADVGNVKQAQSYFDAMES---------AGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS-LEASPDV 704 (856)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~ 704 (856)
.-|-........+|+.++-+...+++.. .+.+.....|...+....+.+.+++|.+...+... ....-+.
T Consensus 924 ~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~ 1003 (1238)
T KOG1127|consen 924 QYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDE 1003 (1238)
T ss_pred hHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5554444445566666654444333322 24456667888888888888888888888876543 1122333
Q ss_pred HHHH----HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCH-HHHHH
Q 003020 705 YTSN----CMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI-SDL-LSYNN 778 (856)
Q Consensus 705 ~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~-~~~~~ 778 (856)
..|+ .+.+.++..|.++.|...+...... .+..+...- -+..-.|+++++.+.|++++..--. .|. .....
T Consensus 1004 sqynvak~~~gRL~lslgefe~A~~a~~~~~~e--vdEdi~gt~-l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~k 1080 (1238)
T KOG1127|consen 1004 SQYNVAKPDAGRLELSLGEFESAKKASWKEWME--VDEDIRGTD-LTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCK 1080 (1238)
T ss_pred hhhhhhhhhhhhhhhhhcchhhHhhhhcccchh--HHHHHhhhh-HHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence 3333 3445556666666555443322110 111111111 1113456778888888887765221 122 33445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 003020 779 VLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 779 l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
++.+....+..+.|...+-+.+.
T Consensus 1081 va~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1081 VAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHHHhhcccchHHHHHHHHHHH
Confidence 55556666777777766666555
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=4.9e-11 Score=119.44 Aligned_cols=200 Identities=12% Similarity=0.103 Sum_probs=168.6
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003020 599 CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKL 678 (856)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 678 (856)
...+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..++..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4557778888889999999999999988764 3356788888888999999999999999998764 5567788888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 679 YTKVGYLKEAQETYKLLRSLEAS-PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 757 (856)
+...|++++|.+.|+++.+.... .....+..+..++...|++++|...++++....|.+...+..++..+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998874322 23456777888899999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 758 TRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 758 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
...++++.+..+. ++..+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQ-TAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988543 677888888999999999999998888765
No 67
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=5.6e-10 Score=110.29 Aligned_cols=286 Identities=14% Similarity=0.094 Sum_probs=169.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHH
Q 003020 404 NDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLW 483 (856)
Q Consensus 404 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 483 (856)
.|++..|++...+-.+.+-. ....|..-..+.-+.|+.+.+-+.+.++.+....++.......
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltr---------------- 159 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTR---------------- 159 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHH----------------
Confidence 57777777777776655432 2334444555556667777777766666654323333333333
Q ss_pred HHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 003020 484 FRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPD 563 (856)
Q Consensus 484 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 563 (856)
......+|++..|..-.....+..|..+........+|.+.|++.+...++.++.+.+.-.+
T Consensus 160 ------------------arlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~ 221 (400)
T COG3071 160 ------------------ARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD 221 (400)
T ss_pred ------------------HHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh
Confidence 34444555555555555566666677788888888888888888888888888888876554
Q ss_pred HH-------HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003020 564 KC-------SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVV 636 (856)
Q Consensus 564 ~~-------~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 636 (856)
.. +|..+++-....+..+.-...++..-.. ...++..-.+++.-+..+|+.++|.++..+..+.+..|+.
T Consensus 222 ~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L-- 298 (400)
T COG3071 222 EEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL-- 298 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH--
Confidence 33 4555555544444444433344333221 2334555556666666677777777777776666544441
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003020 637 YGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE 716 (856)
Q Consensus 637 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 716 (856)
..+ -.+.+-++...-++..++-.+. .+.++..+.+|+..|.+.+.|.+|...|+...+ ..|+..+|+.+.+++.+
T Consensus 299 -~~~-~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~ 373 (400)
T COG3071 299 -CRL-IPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQ 373 (400)
T ss_pred -HHH-HhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHH
Confidence 111 1334455555555555555443 244446666666666677777777776665555 34666666666666666
Q ss_pred cCCHHHHHHHHHHHHh
Q 003020 717 RSMVRQAEEIFEIMKK 732 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~ 732 (856)
.|+..+|.+..++...
T Consensus 374 ~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 374 LGEPEEAEQVRREALL 389 (400)
T ss_pred cCChHHHHHHHHHHHH
Confidence 6666666666665553
No 68
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.1e-09 Score=112.36 Aligned_cols=421 Identities=14% Similarity=0.063 Sum_probs=241.2
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHHcCC
Q 003020 398 IFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDE-YTQSALTRMYIEAGM 476 (856)
Q Consensus 398 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 476 (856)
..+.+..|+++.|+..|.+.....+ ++.+.|..-..+|+..|++++|++=-.+-++ +.|+. ..|+..+.++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhccc
Confidence 3566778999999999988887653 5788888888899999999988876666554 35553 478888888888899
Q ss_pred hHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHH---HHHHHHhcCC----CCcHHHHHHHHHHHHcc-------
Q 003020 477 LEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAE---RAFICCQEGK----KLTVLVFNVMVKAYGMG------- 542 (856)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~----~~~~~~~~~li~~~~~~------- 542 (856)
+++|+.-|.+-+...|.+......+.+++.......+.. .++....... ......|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 999999998888888888888888887772211110000 0000000000 00111222222221110
Q ss_pred ---CCHHHHHHHHHHHH-----hCC-------CCC------------C----------HHHHHHHHHHHHcCCChHHHHH
Q 003020 543 ---RNYDKACNLFDSMT-----SHG-------AVP------------D----------KCSYNSLIQILAGADLPHMAKR 585 (856)
Q Consensus 543 ---g~~~~A~~~~~~m~-----~~~-------~~p------------~----------~~~~~~ll~~~~~~~~~~~A~~ 585 (856)
.+...+...+.... ..+ ..| | ..-...++++..+..+++.+++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 00111111110000 000 000 0 0012233444444445555555
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHH
Q 003020 586 YLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGV-------LINAFADVGNVKQAQSYFD 658 (856)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~~~~A~~~~~ 658 (856)
-+...++.. .+..-++....+|...|.+.+....-...++.|-. ...-|+. +..+|.+.++++.|+..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 555544433 33333444445555555555544444444433311 1111111 2223334444555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 003020 659 AMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVY-TSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN 737 (856)
Q Consensus 659 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 737 (856)
+....--.|+. ..+....++++.......-. .|... -...-+..+.+.|++..|+..|.+++...|.|
T Consensus 323 kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D 391 (539)
T KOG0548|consen 323 KALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED 391 (539)
T ss_pred HHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch
Confidence 54332111111 11222233333333332221 23221 11222566778999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003020 738 EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAV 817 (856)
Q Consensus 738 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 817 (856)
...|...+.+|.+.|.+..|++-.+..++++|. ....|.--+.++....+|++|.+.|++.++. .|+..-+.--+.-
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRR 468 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 999999999999999999999999999999876 6788888899999999999999999999985 5766544333333
Q ss_pred HHHc--C----HHHHHhhcchhhHHHH
Q 003020 818 LMKC--G----LELTRKKNAQSGLQAW 838 (856)
Q Consensus 818 ~~~~--G----~~~~~~~~~~~~~~~~ 838 (856)
|..+ | .+..++.+.+|..+..
T Consensus 469 c~~a~~~~~~~ee~~~r~~~dpev~~i 495 (539)
T KOG0548|consen 469 CVEAQRGDETPEETKRRAMADPEVQAI 495 (539)
T ss_pred HHHHhhcCCCHHHHHHhhccCHHHHHH
Confidence 3332 2 4455555555555544
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.4e-08 Score=100.25 Aligned_cols=299 Identities=13% Similarity=0.054 Sum_probs=195.2
Q ss_pred HhcCCHHHHHHHHHHHhcCC-CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHH
Q 003020 437 SIRRMVCEAEELISEMDGGG-LEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAE 515 (856)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 515 (856)
+-.++...|..++--+.... ++.+...+..+...+...|+.++|...|++....+|....+....+-.+.+.|++++-.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHH
Confidence 34555555655555443332 44566677888888888888888888888888888887777777777788888888777
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 003020 516 RAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGL 595 (856)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 595 (856)
.+...+......+...|..-+......++++.|+.+-++.++... .+...|-.-..++...+++++|.-.|+.+....
T Consensus 287 ~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 287 ALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 776666655555556666666666677777788777777766422 133444444556667777777777777766542
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003020 596 VSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLI-NAFAD-VGNVKQAQSYFDAMESAGLPPNAVIYN 673 (856)
Q Consensus 596 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~ 673 (856)
+.+...|..|+.+|...|++.+|.-+-+...+. .+.+..+...+. ..+.- ...-++|..++++.+... |.-....+
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~ 442 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVN 442 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHH
Confidence 345666777777777777777776666655543 233444554442 22221 223466777777766542 22234556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTY 741 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 741 (856)
.+...+...|.+++++.++++.+. ..||....+.|++.+...+.+++|.+.|..+++.+|.|..+.
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 666777777777777777777665 346777777777777777777777777777777766665443
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=1.5e-11 Score=117.00 Aligned_cols=236 Identities=13% Similarity=0.012 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 565 CSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAF 644 (856)
Q Consensus 565 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 644 (856)
..-+.+...|.+.|.+.+|.+.++..+++. |-+.||..|-..|.+..+++.|+.+|.+-++. .+-|+....-+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 344678888999999999999999888864 56667888889999999999999999998875 233555555677788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAE 724 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 724 (856)
...++.++|.++|+...+.. +.++....++...|.-.++.+-|+.+|+++++.|+ .+...|+.+.-+|.-.++++-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhH
Confidence 88899999999999998874 66777888888888889999999999999999887 67788889998999999999999
Q ss_pred HHHHHHHhCCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 725 EIFEIMKKKGD-A--NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 725 ~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
.-|+++..... + -..+|..++......|++..|.+.|+-++..++. +..++++|+-.-.+.|+.++|..+++....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 99998887652 2 2458999999999999999999999999998877 789999999999999999999999998776
Q ss_pred cCCCCCH
Q 003020 802 AAIQPDD 808 (856)
Q Consensus 802 ~g~~p~~ 808 (856)
+-|+.
T Consensus 458 --~~P~m 462 (478)
T KOG1129|consen 458 --VMPDM 462 (478)
T ss_pred --hCccc
Confidence 45654
No 71
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.42 E-value=2.1e-08 Score=105.55 Aligned_cols=254 Identities=16% Similarity=0.141 Sum_probs=121.5
Q ss_pred cccccccccCCccccccccccc--ccccccccccccCCchhHHHhhccccccHHHHhhHhhhhcChhHHHHHHHhcCCHH
Q 003020 98 VDVRIGNERRTDVISAVCVNGE--VQTKCSTKWARYGGCIPSMLQALDTVKDLDEALKPWAENLSNKERSIILKEQSSWE 175 (856)
Q Consensus 98 ~~l~~~y~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~ 175 (856)
..-+++|.|.|++..|...... .+..+ ...+..+..++.+..-++.|=..|.+.-+++.....++...-+.
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~d-------e~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~ 691 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLAD-------EEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFG 691 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhcc-------HHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHH
Confidence 5567778888888776653321 12111 01223445555555555555555554444433333333333344
Q ss_pred HHHHHHHHhHHcCCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 003020 176 RALEIFEWFKRQECHELNVIHY-NIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLER 254 (856)
Q Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 254 (856)
.|.++-..+ +|..+++. ..-..-+...|+++.|+..|-+.. .....+.+......+.+|+.+++.
T Consensus 692 kaielarfa-----fp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildn 757 (1636)
T KOG3616|consen 692 KAIELARFA-----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDN 757 (1636)
T ss_pred HHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHH
Confidence 444443332 22222211 112223334455555555553322 112334444455566666666666
Q ss_pred HHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhc
Q 003020 255 MNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKA 334 (856)
Q Consensus 255 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (856)
+.... .-..-|..+..-|...|+++.|+++|-+. ..++-.|..|.+.
T Consensus 758 iqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~-------------------------------~~~~dai~my~k~ 804 (1636)
T KOG3616|consen 758 IQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA-------------------------------DLFKDAIDMYGKA 804 (1636)
T ss_pred hhhhc--cccccchHHHHHhccchhHHHHHHHHHhc-------------------------------chhHHHHHHHhcc
Confidence 55442 12234455556666666666666666543 2345556666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 003020 335 GQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYF 414 (856)
Q Consensus 335 g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 414 (856)
|++++|.++-.+.. |.......|..-..-+-..|++.+|.+++-.+. .|+. .|.+|-+.|..+..+++.
T Consensus 805 ~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred ccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHH
Confidence 66666666655542 222233344444444455566666655554332 2322 244555555555555444
Q ss_pred HH
Q 003020 415 WK 416 (856)
Q Consensus 415 ~~ 416 (856)
++
T Consensus 874 ~k 875 (1636)
T KOG3616|consen 874 EK 875 (1636)
T ss_pred HH
Confidence 43
No 72
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=9.1e-07 Score=96.96 Aligned_cols=268 Identities=14% Similarity=0.185 Sum_probs=165.1
Q ss_pred HHHHHHHhCCCC--CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 550 NLFDSMTSHGAV--PDKCSYNSLIQILAGADLPHMAKRYLRKMQEAG--LVSDCIPYCAVISSYMKLGQLEMAEEVYKDM 625 (856)
Q Consensus 550 ~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (856)
++.++....+++ .|+...+.-+.++...+-+.+-+++++++.-.. +..+...-+.|+-... .-+..+..+..+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHh
Confidence 455565555443 356666777788888888888888888865322 1122222333333222 23344555555554
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------CCCCCHHHHHHHHHHHHhcCC
Q 003020 626 IRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESA---------------------GLPPNAVIYNSLIKLYTKVGY 684 (856)
Q Consensus 626 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------------~~~p~~~~~~~l~~~~~~~g~ 684 (856)
-.-+ .|++. ..+...+-+++|..+|++.-.. .--..+..|..+..+-.+.|.
T Consensus 1047 dnyD-a~~ia------~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1047 DNYD-APDIA------EIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred ccCC-chhHH------HHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCc
Confidence 4322 12211 1122233334444443332110 001245678888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003020 685 LKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQM 764 (856)
Q Consensus 685 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 764 (856)
+.+|++-|-+. .|+..|..+++...+.|.|++-..++..+.+.. ..+.+=..|+.+|++.++..+-+++..
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~id~eLi~AyAkt~rl~elE~fi~-- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPYIDSELIFAYAKTNRLTELEEFIA-- 1190 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCccchHHHHHHHHHhchHHHHHHHhc--
Confidence 88888776542 456677888888888888888888888777654 222333567888888888777655432
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--HHHHHhhcchhhHHHHHHHH
Q 003020 765 RESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG--LELTRKKNAQSGLQAWMSTL 842 (856)
Q Consensus 765 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G--~~~~~~~~~~~~~~~~~~~~ 842 (856)
.|+......+++-|...|.|+.|.-+|...- .|..|...|.+.| ..++-..-...+.+.|...-
T Consensus 1191 -----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1191 -----GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVC 1256 (1666)
T ss_pred -----CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 2677778888888888888888887776533 3788888888888 33333334556789999887
Q ss_pred hhHhhh
Q 003020 843 SSVIEE 848 (856)
Q Consensus 843 ~~~~~~ 848 (856)
..|++.
T Consensus 1257 faCvd~ 1262 (1666)
T KOG0985|consen 1257 FACVDK 1262 (1666)
T ss_pred HHHhch
Confidence 777764
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=4.4e-10 Score=126.34 Aligned_cols=182 Identities=11% Similarity=-0.008 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 580 PHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDA 659 (856)
Q Consensus 580 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (856)
+++|...++++++.. +.+...+..+...+...|++++|...|+++++.+ +.+...+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555555555443 2234445555555555555555555555555543 22344555555555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Q 003020 660 MESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEF 739 (856)
Q Consensus 660 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 739 (856)
+.+.+ |.+...+..++..+...|++++|+..++++.+...+.+...+..+..++...|++++|...++++....|.+..
T Consensus 398 Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~ 476 (553)
T PRK12370 398 CLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLI 476 (553)
T ss_pred HHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHH
Confidence 55543 11222222233334445555555555555544321112333444555555555555555555555444444444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 740 TYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
..+.+...|...| ++|...++++.+
T Consensus 477 ~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 477 AVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 4455555555554 244444444443
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=2.4e-11 Score=115.62 Aligned_cols=234 Identities=12% Similarity=0.064 Sum_probs=202.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 003020 532 FNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMK 611 (856)
Q Consensus 532 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 611 (856)
-+.+.++|.+.|.+.+|.+.|+..++. .|-+.||..|-.+|.+.+++..|+.++.+-++. ++-|+.....+...+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 366888999999999999999988876 456678888889999999999999999988875 34555556777888899
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 612 LGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQET 691 (856)
Q Consensus 612 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 691 (856)
.++.++|.++|+...+.. +.++.+...+...|.-.++++-|+.+|++++..|+ .++..|..++-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999999874 44777888888888899999999999999999994 6888999999999999999999999
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 692 YKLLRSLEASPD--VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 692 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
|++.+..--.|+ ...|-.+.......|++.-|.+-|+-.+..++.+..+++.|+-.-.+.|+.++|..+++.+....|
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 999887444454 446888888888999999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 003020 770 I 770 (856)
Q Consensus 770 ~ 770 (856)
.
T Consensus 461 ~ 461 (478)
T KOG1129|consen 461 D 461 (478)
T ss_pred c
Confidence 4
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=4.3e-08 Score=101.64 Aligned_cols=148 Identities=15% Similarity=0.113 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003020 614 QLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFD--------AMESAGLPPNAVIYNSLIKLYTKVGYL 685 (856)
Q Consensus 614 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~ 685 (856)
.+..|..++...-+..+.....+.-.++......|+++.|++++. .+.+.+..|. +...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 466777777776655433335566666777778888888888887 5555544443 444566667777766
Q ss_pred HHHHHHHHHHHhC--CCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 686 KEAQETYKLLRSL--EASPDVYTSNC----MIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 686 ~~A~~~~~~~~~~--~~~p~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
+-|..++...... ...+......+ ++..-.+.|+-++|..+++++.+..|+|..+...++.+|+.. +.+.|+.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 6666666555431 11122222223 233334678888888888888888888888888888888776 5667766
Q ss_pred HHHHH
Q 003020 760 IAKQM 764 (856)
Q Consensus 760 ~~~~~ 764 (856)
+-+++
T Consensus 513 l~k~L 517 (652)
T KOG2376|consen 513 LSKKL 517 (652)
T ss_pred HhhcC
Confidence 65443
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.37 E-value=2.4e-10 Score=128.45 Aligned_cols=202 Identities=13% Similarity=0.114 Sum_probs=159.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 612 LGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQET 691 (856)
Q Consensus 612 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 691 (856)
.+++++|...++++++.+ +.+...+..+...+...|++++|...|+++.+.+ |.+...+..++.++...|++++|+..
T Consensus 317 ~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 356899999999999875 3377888889889999999999999999999875 66678899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 692 YKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG-DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 692 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
++++.+..+. +...+..++..+...|++++|+..++++.... |.++..+..++.++...|++++|...++++....+.
T Consensus 395 ~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 395 INECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 9999985532 22233344555667899999999999998775 557778889999999999999999999998776554
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 003020 771 SDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA-AIQPDDFTFKSLGAVLM 819 (856)
Q Consensus 771 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~ 819 (856)
+....+.+...|...| ++|...++++.+. .-.|....+..++.++.
T Consensus 474 -~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 520 (553)
T PRK12370 474 -GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAH 520 (553)
T ss_pred -hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHH
Confidence 5667788888888888 5888888887762 23444444444444433
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.3e-09 Score=108.00 Aligned_cols=460 Identities=13% Similarity=0.022 Sum_probs=259.8
Q ss_pred HHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003020 272 QMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREG 351 (856)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 351 (856)
++.+..|+++.|...|-.... .+ +++.+.|..-..+|...|++++|++--.+-.+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~----------------------l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~-- 64 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIM----------------------LS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR-- 64 (539)
T ss_pred HhhcccccHHHHHHHHHHHHc----------------------cC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--
Confidence 456678999999999987652 22 23778999999999999999999887777666
Q ss_pred CCCCHH-hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHH
Q 003020 352 IVPTTV-TFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYR 430 (856)
Q Consensus 352 ~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 430 (856)
+.|+.. .|+....++.-.|++++|..-|.+-++.. +.|...++.+..++... . .+.+.|. ++..|.
T Consensus 65 l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~---------~p~~~~ 131 (539)
T KOG0548|consen 65 LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFT---------KPYFHE 131 (539)
T ss_pred cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-Hhhhhcc---------CcHHHH
Confidence 467754 89999999999999999999999999775 66778888888877111 0 1111111 111111
Q ss_pred HH-----HHHHHhcCCHHHHHHHHHHHhc---CCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHH
Q 003020 431 TL-----LYAYSIRRMVCEAEELISEMDG---GGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANI 502 (856)
Q Consensus 431 ~l-----l~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 502 (856)
.+ .+.+.....+..-++.+.+-.. .... |+....++.... ..+.. ....-.......+..+. ....
T Consensus 132 ~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~-d~r~m~a~~~l~-~~~~~--~~~~~~~~~~~~~~~p~--~~~~ 205 (539)
T KOG0548|consen 132 KLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN-DPRLMKADGQLK-GVDEL--LFYASGIEILASMAEPC--KQEH 205 (539)
T ss_pred HhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc-cHHHHHHHHHHh-cCccc--cccccccccCCCCCCcc--cccC
Confidence 11 1111111111111111111000 0000 111111111000 00000 00000000000000000 0000
Q ss_pred HHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH
Q 003020 503 DGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHM 582 (856)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 582 (856)
...-..++..+-.+. ..-..-...++++..+..+++.|++-+....+.. -+..-++....++...|.+..
T Consensus 206 ~~~~~~~d~~ee~~~--------k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~ 275 (539)
T KOG0548|consen 206 NGFPIIEDNTEERRV--------KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAE 275 (539)
T ss_pred CCCCccchhHHHHHH--------HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHH
Confidence 000000000000000 0011223344555555555666666666555542 233334444455555555555
Q ss_pred HHHHHHHHHHcCCCC--C----hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 583 AKRYLRKMQEAGLVS--D----CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 583 A~~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
+...-....+.|... + ...+..+..+|.+.++++.|+..|.+.+.....|+. ..+....++++..
T Consensus 276 c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~ 346 (539)
T KOG0548|consen 276 CIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKE 346 (539)
T ss_pred hhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHH
Confidence 555444444433110 0 011222344666778889999999887754333332 2233345566655
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003020 657 FDAMESAGLPPNA-VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD 735 (856)
Q Consensus 657 ~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 735 (856)
.+...-.+ |.. .-...-+..+.+.|++..|+..|.++++.. +.|...|....-+|.+.|.+..|+.-.+..++..|
T Consensus 347 ~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p 423 (539)
T KOG0548|consen 347 AERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP 423 (539)
T ss_pred HHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc
Confidence 55544433 222 333444777889999999999999988865 35677899999999999999999999999999989
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 736 ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 736 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
+....|..=+.++....+|+.|.+.|++.++.+|. +......+.+++..+...+...++.++
T Consensus 424 ~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~-~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 424 NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS-NAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 88888988888999999999999999999998876 666667777776654333444444444
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=2.4e-08 Score=103.48 Aligned_cols=449 Identities=13% Similarity=0.057 Sum_probs=266.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 003020 328 IDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKI 407 (856)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 407 (856)
++-+...|++++|.....+++..+ +-+...+..-+-++...+++++|+.+.+.-... ..+.+.+---..+..+.++.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 556778899999999999999875 335556766677888999999999666553311 11111111223445578999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHHcCChHHHHHHHHH
Q 003020 408 SMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEI-DEYTQSALTRMYIEAGMLEKSWLWFRR 486 (856)
Q Consensus 408 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 486 (856)
++|+..++-.. +.+..+...-...+.+.|++++|+++|+.+.+.+.+- +...-..++.+-... .+. +.+.
T Consensus 96 Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~-~~q~ 166 (652)
T KOG2376|consen 96 DEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ-LLQS 166 (652)
T ss_pred HHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH-HHHh
Confidence 99999988332 1344466666788899999999999999998876432 222222222221111 111 2222
Q ss_pred HHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHh--------cCCCCc-------HHHHHHHHHHHHccCCHHHHHHH
Q 003020 487 FHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQ--------EGKKLT-------VLVFNVMVKAYGMGRNYDKACNL 551 (856)
Q Consensus 487 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~ 551 (856)
.......+.+...+.+-.+...|++.+|+++++.+. .....+ ..+--.+.-++...|+.++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 222223344556667888899999999999998872 111111 12344456677789999999999
Q ss_pred HHHHHhCCCCCCHHH----HHHHHHHHHcCCChH-HHHHHHHHHHHc-----------CCCCChHhHHHHHHHHHhcCCH
Q 003020 552 FDSMTSHGAVPDKCS----YNSLIQILAGADLPH-MAKRYLRKMQEA-----------GLVSDCIPYCAVISSYMKLGQL 615 (856)
Q Consensus 552 ~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~-~A~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~ 615 (856)
|...+..... |... -|.++..-....-++ .++..++..... ........-+.++..| .+..
T Consensus 247 y~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~ 323 (652)
T KOG2376|consen 247 YVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKM 323 (652)
T ss_pred HHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhH
Confidence 9999987543 4322 222222211111111 111122111110 0000111112233333 2333
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 003020 616 EMAEEVYKDMIRFNVEPDVVVYGVLINAFA--DVGNVKQAQSYFDAMESAGLPPN-AVIYNSLIKLYTKVGYLKEAQETY 692 (856)
Q Consensus 616 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 692 (856)
+.+.++-..... ..|. ..+.+++..+. +...+..|.+++....+.. +-+ ..+.-.++......|+++.|++++
T Consensus 324 ~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 324 DQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 444443333221 1222 33444444332 2235777888887776653 333 455666777788999999999999
Q ss_pred H--------HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHcCCHHHH
Q 003020 693 K--------LLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG-------DANEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 693 ~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A 757 (856)
. .+.+.+..|..+ ..+...+.+.++.+.|..++.++...- +.-..++.-++..-.+.|+-++|
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 8 555555555544 456677777777666777766554322 11122334444455577999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 758 TRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 758 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
...++++.+..+. |..+...++.+|++. +.+.|..+-+++
T Consensus 478 ~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 478 SSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999998876 889999999988875 567777665543
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=4.7e-10 Score=119.40 Aligned_cols=251 Identities=16% Similarity=0.220 Sum_probs=176.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHc-----C-CCCChHh-HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CC
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEA-----G-LVSDCIP-YCAVISSYMKLGQLEMAEEVYKDMIRF-----NV-EP 632 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~ 632 (856)
+...+...|...|+++.|..+++..++. | ..|.+.+ .+.+...|...+++++|..+|++++.. |. .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555555555555555555554443 1 1222222 334677888899999999999988752 21 12
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC
Q 003020 633 D-VVVYGVLINAFADVGNVKQAQSYFDAMESA-----G-LPPNA-VIYNSLIKLYTKVGYLKEAQETYKLLRSL---EAS 701 (856)
Q Consensus 633 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 701 (856)
. ..+++.|..+|.+.|++++|..++++..+. | ..|.. ..++.++..++..+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2 347788888899999999988888776541 2 12233 34677888899999999999999876651 122
Q ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 003020 702 PD----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKG--------DANEFTYAMMLIMYKRNGRFEEATRIAKQMRES-- 767 (856)
Q Consensus 702 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 767 (856)
++ ..+++.|...|...|++++|.++++++++.. +.....++.|+..|.+.+++.+|.++|.+....
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 3488999999999999999999999887654 122347889999999999999999999887654
Q ss_pred --CCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH------cCCCCCHHHHHHHHH
Q 003020 768 --GLI-SDL-LSYNNVLGLYAVDGRFKDVIGTFKDMVN------AAIQPDDFTFKSLGA 816 (856)
Q Consensus 768 --~~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~g~~p~~~~~~~l~~ 816 (856)
||. |+. .+|.+|+.+|.+.|++++|.++.+.... ....|+.........
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLA 499 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhh
Confidence 443 233 6789999999999999999999988874 123455554444433
No 80
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=7.6e-07 Score=97.52 Aligned_cols=493 Identities=14% Similarity=0.110 Sum_probs=254.7
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHhHHcCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHH
Q 003020 161 NKERSIILKEQSSWERALEIFEWFKRQEC--HELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDV 238 (856)
Q Consensus 161 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 238 (856)
...++.+..+.|-+.+|++.|........ .+-+...=..++. |...-.+++..+++..|+..+++-|..+.-.+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~-yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVN-YFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33455566667777788877765433210 0000000012333 33334578888888888888887777777777777
Q ss_pred HHcCCCHHHHHHHHHHHHhC-----------CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhh--------------
Q 003020 239 CSKGGLKEEAVCWLERMNEG-----------GMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSR-------------- 293 (856)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------------- 293 (856)
|..+=-.+.-+++|+..... ++.-|+.+.-..|.+-|+.|++.+.+++.++-.--
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 76665566677777766532 23456667777888889999988888876543110
Q ss_pred -ccccCC------------------cchhhhhhhhccCCcCCCCc-----------CH-hHHHHH------------HHH
Q 003020 294 -ESLRHG------------------EDTKTMIGKVENGSHVNGSL-----------SS-YTYNTL------------IDT 330 (856)
Q Consensus 294 -~~~~~~------------------~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~l------------i~~ 330 (856)
..+.+- +++...++.+-.-..+...| +. ..-+.+ ..-
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 000000 01112222221111111111 01 111111 122
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHH----------HHHHHHHHhCCC----------CCC
Q 003020 331 YGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEV----------DSLIKKMEELHC----------PPD 390 (856)
Q Consensus 331 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A----------~~~~~~~~~~~~----------~~~ 390 (856)
.-+.++..--...++..++.|.. |..++|.|.+.|...++-.+- ..+=.--.+++. ..|
T Consensus 848 vEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 22333444445556667777776 888999888888654322110 000000000100 001
Q ss_pred H---------HHHHHHHHHHHccCChHHH-----------HHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCCHHHHHHH
Q 003020 391 T---------RTYNILIFLHAKNDKISMA-----------SRYFWKMKEANLE--PDIVSYRTLLYAYSIRRMVCEAEEL 448 (856)
Q Consensus 391 ~---------~~~~~li~~~~~~g~~~~A-----------~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~ 448 (856)
. ..|-....-+.+..+.+-- ..+.++..+.+++ .|+..-..-..++...+-+.+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 1 1122222222223332211 2233444443321 2344444556666677777777777
Q ss_pred HHHHhcCCCC-CCHhhHHHH----------------------------HHHHHHcCChHHHHHHHHHHHhcCCCCchhhH
Q 003020 449 ISEMDGGGLE-IDEYTQSAL----------------------------TRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYS 499 (856)
Q Consensus 449 ~~~~~~~~~~-p~~~~~~~l----------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 499 (856)
++++.-.... .....+..+ ...+...+-+++|..+|++.. .+..+..
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~----~n~~A~~ 1082 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD----MNVSAIQ 1082 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc----ccHHHHH
Confidence 7776532211 111111111 222333344455555554432 1111211
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 003020 500 ANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADL 579 (856)
Q Consensus 500 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 579 (856)
.++. .-+..+.|.+.-+++ ..+.+|..+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.
T Consensus 1083 VLie---~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1083 VLIE---NIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred HHHH---HhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCc
Confidence 1111 122333333333332 24678888888888888888888776553 366778888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 580 PHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDA 659 (856)
Q Consensus 580 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (856)
+++-.+++..+.+..-.|.+ -+.|+-+|++.++..+-.+.+ ..||......+.+-|...|.++.|.-+|..
T Consensus 1149 ~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~ 1219 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN 1219 (1666)
T ss_pred HHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH
Confidence 88888888777776655544 356777788887776655443 246666666677777777777776666544
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 660 MESAGLPPNAVIYNSLIKLYTKVGYLKEAQET 691 (856)
Q Consensus 660 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 691 (856)
. ..|..|...+...|++..|...
T Consensus 1220 v---------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1220 V---------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred h---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 3 2344445555555555555444
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.35 E-value=7.4e-09 Score=108.86 Aligned_cols=194 Identities=18% Similarity=0.212 Sum_probs=145.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 003020 328 IDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKI 407 (856)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 407 (856)
|.+.....++.+|+.+++.+..+.. -..-|..+...|...|+++.|.++|.+.. .++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4445566778888888887766422 23356778889999999999999997643 346678899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHH
Q 003020 408 SMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRF 487 (856)
Q Consensus 408 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 487 (856)
+.|.++-.+.. |.......|.+-..-+-.+|++.+|.++|-.+. .|+ ..+.+|-+.|..++.+.+.++.
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 99998877764 334455667777777888999999998886553 233 3467899999999988888776
Q ss_pred HhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 003020 488 HLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFD 553 (856)
Q Consensus 488 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 553 (856)
+ +..-.++...++.-|...|+...|+.-|-++.+ |..-++.|...+.|++|.++-+
T Consensus 877 h--~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 877 H--GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred C--hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHHh
Confidence 6 233456677788889999999999998876543 7777888888888888876654
No 82
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.35 E-value=1.1e-08 Score=98.57 Aligned_cols=299 Identities=12% Similarity=0.031 Sum_probs=138.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHH
Q 003020 467 LTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYD 546 (856)
Q Consensus 467 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 546 (856)
++..+...|++.+|+..|..+.+.+|.+..++...+..|...|+..-|+.-+.+..+..|.-..+-..-...+.++|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 34444444555555555555554445555555555555555555555555555555544443444444445555555555
Q ss_pred HHHHHHHHHHhCCCCCCH--------------HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 003020 547 KACNLFDSMTSHGAVPDK--------------CSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKL 612 (856)
Q Consensus 547 ~A~~~~~~m~~~~~~p~~--------------~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 612 (856)
.|..-|+.++.+...... ......+..+...|+...|+.+...+++.. +.|...|..-..+|...
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~ 202 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAE 202 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhc
Confidence 555555555554211100 011122233444555555666655555542 34555555555556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-H---HHHH---HH------HH
Q 003020 613 GQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAV-I---YNSL---IK------LY 679 (856)
Q Consensus 613 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~---~~~l---~~------~~ 679 (856)
|++..|+.-++.+.+.. ..+...+--+-..+...|+.+.++...++.++.+ |+.. + |..+ .. ..
T Consensus 203 ~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ 279 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQA 279 (504)
T ss_pred CcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655555554432 2234444444455555566666655555555542 3331 1 1111 11 11
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYT---SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEE 756 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 756 (856)
...++|.++++..+...+......... +..+-.++...+++.+|+....++++..|.|..++.--+.+|.-...+++
T Consensus 280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHH
Confidence 223444444444444444222111111 11222333344445555555555554444444555555555544445555
Q ss_pred HHHHHHHHHHcCC
Q 003020 757 ATRIAKQMRESGL 769 (856)
Q Consensus 757 A~~~~~~~~~~~~ 769 (856)
|+.-|+++.+.++
T Consensus 360 AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 360 AIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHhcCc
Confidence 5555555554443
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.7e-07 Score=100.34 Aligned_cols=530 Identities=12% Similarity=0.132 Sum_probs=291.5
Q ss_pred hcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CC-------C-CcChhhHHHHHHHHH
Q 003020 170 EQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSV-KG-------I-VPINSTYGTLIDVCS 240 (856)
Q Consensus 170 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-------~-~p~~~~~~~l~~~~~ 240 (856)
.-|+.+.|.+.-+.++ +..+|..|.+++.+..+.+-|...+..|.. +| . .|+ .+=....-...
T Consensus 740 tiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAi 811 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAI 811 (1416)
T ss_pred EeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHH
Confidence 3578888877666554 356799999999998888888777766542 11 1 111 22223333446
Q ss_pred cCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcC
Q 003020 241 KGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLS 320 (856)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (856)
..|..++|..+|++-.+. ..+-..|..+|.+++|.++-+.-.. -.-
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR-------------------------iHL 857 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR-------------------------IHL 857 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc-------------------------eeh
Confidence 789999999999987653 3444567788999999998875321 011
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHH----------HHCCC---------CCCHHhHHHHHHHHhcCCCHHHHHHHHHH
Q 003020 321 SYTYNTLIDTYGKAGQLKEASETFAQM----------LREGI---------VPTTVTFNTMIHIYGNNDQLAEVDSLIKK 381 (856)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A~~~~~~~----------~~~g~---------~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 381 (856)
..||.....-+-..++.+.|++.|++. +...+ ..|...|......+...|+.+.|+.++..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 246666666666778888888887653 22111 12334455555555667778888777776
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH
Q 003020 382 MEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDE 461 (856)
Q Consensus 382 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 461 (856)
... |-+++...|-+|+.++|-++-++- .|......|.+.|-..|++.+|..+|-+..
T Consensus 938 A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-------- 994 (1416)
T KOG3617|consen 938 AKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ-------- 994 (1416)
T ss_pred hhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH--------
Confidence 652 456677777788888888776653 355666678888888888888888887764
Q ss_pred hhHHHHHHHHHHcCChHH---------------HHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHH------
Q 003020 462 YTQSALTRMYIEAGMLEK---------------SWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFIC------ 520 (856)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~---------------a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------ 520 (856)
++.+.++.|-..+.-|+ |-..|+... .-....+..|.+.|.+.+|+++--.
T Consensus 995 -afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g-------~~~~~AVmLYHkAGm~~kALelAF~tqQf~a 1066 (1416)
T KOG3617|consen 995 -AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG-------GYAHKAVMLYHKAGMIGKALELAFRTQQFSA 1066 (1416)
T ss_pred -HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc-------hhhhHHHHHHHhhcchHHHHHHHHhhcccHH
Confidence 23334444333332222 222222211 0111224456666666666654211
Q ss_pred ---Hhc-C-CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-C
Q 003020 521 ---CQE-G-KKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEA-G 594 (856)
Q Consensus 521 ---~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~ 594 (856)
+.+ . ...|+...+.-.+.++...++++|..++-...+ |...+..|...+ ..--.++-+.|--. .
T Consensus 1067 L~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd 1136 (1416)
T KOG3617|consen 1067 LDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKD 1136 (1416)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcC
Confidence 111 1 124566666667777777777777776665543 233333333332 22222222222111 0
Q ss_pred CCCCh----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH----------------H
Q 003020 595 LVSDC----IPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQA----------------Q 654 (856)
Q Consensus 595 ~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----------------~ 654 (856)
-.|+. .....+...|.++|.+..|-+-|.++-. + -.-++++.+.|+.++- -
T Consensus 1137 ~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd---K------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAA 1207 (1416)
T KOG3617|consen 1137 DMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD---K------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAA 1207 (1416)
T ss_pred CCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh---H------HHHHHHHHhcCCcceEEEEeeccccceeeeehh
Confidence 11222 2355566677777877777766655421 1 1234555566654431 1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003020 655 SYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG 734 (856)
Q Consensus 655 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 734 (856)
.+++ ..+...++.+...++..|.+..-++---.+|+...... ...|...-. ..|-.++|..-+.++..+.
T Consensus 1208 NyLQ---tlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiE----iee~q~ydK---a~gAl~eA~kCl~ka~~k~ 1277 (1416)
T KOG3617|consen 1208 NYLQ---TLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIE----IEELQTYDK---AMGALEEAAKCLLKAEQKN 1277 (1416)
T ss_pred hhhh---hcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhh----HHHHhhhhH---HhHHHHHHHHHHHHHHhhc
Confidence 2221 12334455555555555555444444444444333311 111111111 1223344444444444332
Q ss_pred CCCHHHHHHHH----------HHHH-HcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 735 DANEFTYAMML----------IMYK-RNGRFEEATRIAKQMRESGLISD----LLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 735 ~~~~~~~~~l~----------~~~~-~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
.....++.|- .... -..+..+.++-...+++.-..|| ...|..++..|....+|..|-+.+++|
T Consensus 1278 -~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el 1356 (1416)
T KOG3617|consen 1278 -MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTEL 1356 (1416)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 1111222221 1111 11255555666666666533333 356788889999999999999999999
Q ss_pred HHc
Q 003020 800 VNA 802 (856)
Q Consensus 800 ~~~ 802 (856)
..+
T Consensus 1357 ~~k 1359 (1416)
T KOG3617|consen 1357 QKK 1359 (1416)
T ss_pred hhc
Confidence 875
No 84
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=9.4e-10 Score=110.06 Aligned_cols=200 Identities=19% Similarity=0.169 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 565 CSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAF 644 (856)
Q Consensus 565 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 644 (856)
..+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555555432 2334556666677777777777777777777654 33555666777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 645 ADVGNVKQAQSYFDAMESAGL-PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQA 723 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 723 (856)
...|++++|...+++...... +.....+..+..++...|++++|...+++..+... .+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHH
Confidence 777888888888877765421 22345666777778888888888888888777432 2455677777888888888888
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 724 EEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
...++++.+..+.++..+..++..+...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88888887776777777777888888888888888887777654
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=6.1e-08 Score=104.98 Aligned_cols=259 Identities=15% Similarity=0.132 Sum_probs=159.7
Q ss_pred HHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003020 272 QMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREG 351 (856)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 351 (856)
..+...|++++|+..++.... ...............+.+.|+.++|..+|..+++.+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~-----------------------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN 68 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK-----------------------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN 68 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh-----------------------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 445678899999998876431 122223456777888889999999999999998875
Q ss_pred CCCCHHhHHHH-HHHHhc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHcCCCC
Q 003020 352 IVPTTVTFNTM-IHIYGN-----NDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKI-SMASRYFWKMKEANLEP 424 (856)
Q Consensus 352 ~~p~~~~~~~l-l~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~ 424 (856)
|+...|... ..+..- ..+.+...++++++.+.- |...+...+.-.+.....+ ..+..++..++.+|+|+
T Consensus 69 --Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs 144 (517)
T PF12569_consen 69 --PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS 144 (517)
T ss_pred --CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch
Confidence 555555444 444421 235677788888877542 3333332222222221222 34555666777777643
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcC----C----------CCCCH--hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 003020 425 DIVSYRTLLYAYSIRRMVCEAEELISEMDGG----G----------LEIDE--YTQSALTRMYIEAGMLEKSWLWFRRFH 488 (856)
Q Consensus 425 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~----------~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 488 (856)
+|+.+-..|.......-..+++...... + -.|.. .++..+.+.|...|++++|+...++..
T Consensus 145 ---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 145 ---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI 221 (517)
T ss_pred ---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4445555555444444444444443321 1 11222 244555666777777777777777777
Q ss_pred hcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 003020 489 LAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGA 560 (856)
Q Consensus 489 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 560 (856)
...|...+.|..-+..+-..|++.+|.+..+.+...+..|-.+-+..+..+.+.|+.++|.+++....+.+.
T Consensus 222 ~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 222 EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 777777777777777777777777777777777777777766667777777777777777777776665543
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=6.4e-10 Score=118.41 Aligned_cols=205 Identities=23% Similarity=0.354 Sum_probs=130.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHH
Q 003020 532 FNVMVKAYGMGRNYDKACNLFDSMTSH-----G--AVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCA 604 (856)
Q Consensus 532 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----~--~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 604 (856)
.+.+...|...+++++|..+|++++.. | .+.-..+++.|..+|.+.|++++|...++.+.+
T Consensus 244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~------------ 311 (508)
T KOG1840|consen 244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE------------ 311 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH------------
Confidence 334667777777777777777776543 1 111123444444555555555555544333322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHH
Q 003020 605 VISSYMKLGQLEMAEEVYKDMIRFNVEPDVV-VYGVLINAFADVGNVKQAQSYFDAMESA---GLPP----NAVIYNSLI 676 (856)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p----~~~~~~~l~ 676 (856)
+++..... ..|.+. .++.++..++..+++++|..++....+. -+.+ -..+++.|.
T Consensus 312 ----------------I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~ 374 (508)
T KOG1840|consen 312 ----------------IYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLA 374 (508)
T ss_pred ----------------HHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 22221101 122332 4455666677778888887777766431 1111 235788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C---CCCHHHHH
Q 003020 677 KLYTKVGYLKEAQETYKLLRSL----EA--SPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKK----G---DANEFTYA 742 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~---~~~~~~~~ 742 (856)
..|.+.|++++|.++|++++.. +. .+. ...++.|...|.+.+++++|.++|.+.... + |....+|.
T Consensus 375 ~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~ 454 (508)
T KOG1840|consen 375 ELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYL 454 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 9999999999999999877652 11 122 346778888899999999998888765432 2 34456899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 003020 743 MMLIMYKRNGRFEEATRIAKQMR 765 (856)
Q Consensus 743 ~l~~~~~~~g~~~~A~~~~~~~~ 765 (856)
.|+.+|..+|++++|+++.+.+.
T Consensus 455 nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 455 NLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 99999999999999999998876
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.32 E-value=4.2e-08 Score=106.22 Aligned_cols=291 Identities=12% Similarity=0.089 Sum_probs=198.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----
Q 003020 329 DTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKN---- 404 (856)
Q Consensus 329 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 404 (856)
..+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.+ |.|..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 4457889999999999886553 43334456677889999999999999999999886 55666667776666222
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHH
Q 003020 405 -DKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMV-CEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWL 482 (856)
Q Consensus 405 -g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 482 (856)
...+...++|+++...- |.......+.-.+.....+ ..+...+..++..|++ .+++.+-..|....+.+-...
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 35677888999887654 4333333332223222223 3455566777777764 455555556665555444445
Q ss_pred HHHHHHhc---------------CCCCchhh--HHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCH
Q 003020 483 WFRRFHLA---------------GDMSSEGY--SANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNY 545 (856)
Q Consensus 483 ~~~~~~~~---------------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 545 (856)
++..+... .++..-.| .-++..|...|++++|++.++++++..|..+..|...+..+-+.|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 55444321 01111123 44577788888999999999888888888888888888899999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHh--------HHHHHHHHHhcCCHHH
Q 003020 546 DKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIP--------YCAVISSYMKLGQLEM 617 (856)
Q Consensus 546 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~ 617 (856)
++|.+.++........ |...-+..+..+.+.|+.++|.+++....+.+..|.... ......+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999888888876443 667777777888888888888888888876654222111 2444567788888888
Q ss_pred HHHHHHHHHH
Q 003020 618 AEEVYKDMIR 627 (856)
Q Consensus 618 A~~~~~~~~~ 627 (856)
|+..|..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 8777776654
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=8e-08 Score=95.10 Aligned_cols=186 Identities=12% Similarity=0.048 Sum_probs=86.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003020 611 KLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQE 690 (856)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 690 (856)
...+++.|+.+-++.++.+ +.++..+-.-...+...|++++|.-.|+..+... |-+..+|..|+..|...|++.||.-
T Consensus 312 ~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHH
Confidence 3444555555555554432 1233344334444445555555555555544432 2334455555555555555555544
Q ss_pred HHHHHHhCCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003020 691 TYKLLRSLEASPDVYTSNCMI-DLYS-ERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESG 768 (856)
Q Consensus 691 ~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 768 (856)
.-+...+. +..+..+...++ ..+. ....-++|..++++.++..|.-..+.+.++..|...|++++++.++++.+..-
T Consensus 390 ~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 390 LANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred HHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 44333321 112222222221 1111 12223455555555555555555555555555555555555555555555432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 769 LISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 769 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
||....+.|+..+...+.+.+|.+.|..++.
T Consensus 469 --~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 469 --PDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred --cccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3445555555555555555555555555544
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=1.8e-09 Score=110.92 Aligned_cols=226 Identities=15% Similarity=0.082 Sum_probs=144.8
Q ss_pred CChHHHHHHHHHHHHcCC-CC--ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003020 578 DLPHMAKRYLRKMQEAGL-VS--DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQ 654 (856)
Q Consensus 578 ~~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 654 (856)
+..+.++..+.+++.... .| ....|..+...|...|+.++|...|+++++.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 344556666666654321 11 13446677777888888888888888888765 336778888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003020 655 SYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG 734 (856)
Q Consensus 655 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 734 (856)
..|++..+.. |.+..+|..++.++...|++++|++.|++..+.. |+..........+...++.++|.+.+++.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888888764 4456777888888888888888888888887743 332211122223345677888888886655443
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003020 735 DANEFTYAMMLIMYKRNGRFEEATRIAKQMR-------ESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD 807 (856)
Q Consensus 735 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 807 (856)
+++... ........|+..++ +.++.+. +.++. ...+|..++.++...|++++|+..|++.++.. .||
T Consensus 196 ~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~-~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 196 DKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAER-LCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred CccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 333222 22333345555443 2334443 22222 34678888888888888888888888888753 335
Q ss_pred HHHHHH
Q 003020 808 DFTFKS 813 (856)
Q Consensus 808 ~~~~~~ 813 (856)
.+-+..
T Consensus 270 ~~e~~~ 275 (296)
T PRK11189 270 FVEHRY 275 (296)
T ss_pred HHHHHH
Confidence 444443
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=5.4e-09 Score=95.73 Aligned_cols=208 Identities=11% Similarity=-0.012 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 003020 195 IHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMY 274 (856)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 274 (856)
.+...|.-.|..+|++..|..-+++.++.++. +..+|..+...|.+.|..+.|.+.|++++...+. +-.+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 34566777888999999999999999988766 7778999999999999999999999999887533 566888888889
Q ss_pred HhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003020 275 KKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVP 354 (856)
Q Consensus 275 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 354 (856)
|.+|++++|...|++... .|.......+|..++-+..+.|+++.|.+.|++.++....
T Consensus 114 C~qg~~~eA~q~F~~Al~---------------------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~- 171 (250)
T COG3063 114 CAQGRPEEAMQQFERALA---------------------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ- 171 (250)
T ss_pred HhCCChHHHHHHHHHHHh---------------------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-
Confidence 999999999999988764 4555566788888898888999999999999998886433
Q ss_pred CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhH
Q 003020 355 TTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSY 429 (856)
Q Consensus 355 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 429 (856)
...+...+.....+.|++..|...++.....+ .++..+.-..|..--+.|+.+.|.+.=..+... -|...-|
T Consensus 172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 172 FPPALLELARLHYKAGDYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred CChHHHHHHHHHHhcccchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 34567777788888888888888888888665 477777777777777888877777665555543 2444433
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=7.5e-09 Score=94.80 Aligned_cols=206 Identities=12% Similarity=0.059 Sum_probs=162.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003020 602 YCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK 681 (856)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 681 (856)
...|.-.|...|++..|..-++++++.. +.+..+|..+...|.+.|..+.|.+.|++.++.. |.+..+.|..+..+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4556677888899999999998888864 3356688888888888999999999998888864 5566888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003020 682 VGYLKEAQETYKLLRSLEASP-DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRI 760 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 760 (856)
.|++++|...|++......-+ ...+|..++-+..+.|+.+.|.+.|++.++..|..+.+...+.....+.|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 899999999988887743222 2457778888888889999999999999988888888888888888899999999988
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 761 AKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFK 812 (856)
Q Consensus 761 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 812 (856)
+++....+. +...+.-..+..-...|+-+.|-++=.++.+ ..|...-|.
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q 244 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQ 244 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHH
Confidence 888888777 5777777777888888887777666555554 255554443
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.22 E-value=1.3e-07 Score=91.43 Aligned_cols=352 Identities=13% Similarity=0.115 Sum_probs=223.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCH
Q 003020 432 LLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHV 511 (856)
Q Consensus 432 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 511 (856)
+...+..+|++..|+.-|...++.++. +-.++-.-...|...|+-..|+.-+.+++...|.-..+....+..+.++|.+
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 444444455555555555544432111 1112222233444455555555555555555555445555555555556666
Q ss_pred HHHHHHHHHHhcCCCCc---H------------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003020 512 LEAERAFICCQEGKKLT---V------------LVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAG 576 (856)
Q Consensus 512 ~~A~~~~~~~~~~~~~~---~------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 576 (856)
++|..-|+......+.+ . ......+..+...|+...|+.....+++. .+.|...+..-..+|..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHh
Confidence 66665555555544311 1 12223345566789999999999999987 34588888888999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHH---------HHH
Q 003020 577 ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVV----YGVL---------INA 643 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l---------~~~ 643 (856)
.|.+..|+.-++...+.. ..+...+--+-..+...|+.+.++...++.++. .||-.. |-.+ +..
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888877754 234555666677788999999999999999986 455432 2221 122
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 003020 644 FADVGNVKQAQSYFDAMESAGLPPNAV---IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSM 719 (856)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 719 (856)
....+++.++++-.+..++........ .+..+-.++...|++.+|++...++++. .|+ +.++.--..+|.-..+
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHH
Confidence 345677888888888888764321223 3445556677889999999999999884 455 7788888899999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 720 VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
|+.|+.-|+.+.+.++.|..+- +.++-.+++.+..- -.-|+-++.+ -+.-.-.+..+.|.+|
T Consensus 357 YD~AI~dye~A~e~n~sn~~~r--------------eGle~Akrlkkqs~---kRDYYKILGV-kRnAsKqEI~KAYRKl 418 (504)
T KOG0624|consen 357 YDDAIHDYEKALELNESNTRAR--------------EGLERAKRLKKQSG---KRDYYKILGV-KRNASKQEITKAYRKL 418 (504)
T ss_pred HHHHHHHHHHHHhcCcccHHHH--------------HHHHHHHHHHHHhc---cchHHHHhhh-cccccHHHHHHHHHHH
Confidence 9999999999999887775543 23333333433311 1234444433 3344456777778887
Q ss_pred HHcCCCCCHH
Q 003020 800 VNAAIQPDDF 809 (856)
Q Consensus 800 ~~~g~~p~~~ 809 (856)
-.. ..||+.
T Consensus 419 Aqk-WHPDNF 427 (504)
T KOG0624|consen 419 AQK-WHPDNF 427 (504)
T ss_pred HHh-cCCccc
Confidence 664 567654
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=2.6e-06 Score=91.53 Aligned_cols=384 Identities=10% Similarity=0.121 Sum_probs=189.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 003020 331 YGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMA 410 (856)
Q Consensus 331 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 410 (856)
+-..|+.+.|+.+|..... |.++++..|-+|+.++|.++-++.. |....-.|...|-..|++.+|
T Consensus 922 lES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~A 986 (1416)
T KOG3617|consen 922 LESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKA 986 (1416)
T ss_pred HhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHH
Confidence 3345566666666554432 4455555555666666665555422 444555555666666666666
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHH---------------hcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcC
Q 003020 411 SRYFWKMKEANLEPDIVSYRTLLYAYS---------------IRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAG 475 (856)
Q Consensus 411 ~~~~~~m~~~~~~~~~~~~~~ll~~~~---------------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 475 (856)
...|.+... +...|+.|- ...+.-.|-+.|++.- .. +...+..|-+.|
T Consensus 987 v~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~~-----~~~AVmLYHkAG 1049 (1416)
T KOG3617|consen 987 VKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---GY-----AHKAVMLYHKAG 1049 (1416)
T ss_pred HHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---hh-----hhHHHHHHHhhc
Confidence 666654432 111111111 1122223333444321 11 112334556666
Q ss_pred ChHHHHHHH---------HHHHh--cCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCC
Q 003020 476 MLEKSWLWF---------RRFHL--AGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRN 544 (856)
Q Consensus 476 ~~~~a~~~~---------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 544 (856)
.+.+|+++- +-+.+ ....++.....-.+.+....++++|..++-...+ |...+..|. ..+
T Consensus 1050 m~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~--------~~~AlqlC~-~~n 1120 (1416)
T KOG3617|consen 1050 MIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE--------FSGALQLCK-NRN 1120 (1416)
T ss_pred chHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHh-cCC
Confidence 666665542 11111 1234556666667888888888888777654432 222222222 222
Q ss_pred HHHHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH-
Q 003020 545 YDKACNLFDSMTSH-GAVPDK----CSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMA- 618 (856)
Q Consensus 545 ~~~A~~~~~~m~~~-~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A- 618 (856)
..-..++-+.|... .-.|+. .....+...|.++|.+..|-+-|.++-.+ ...+.++.+.|+.++-
T Consensus 1121 v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~ 1191 (1416)
T KOG3617|consen 1121 VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIR 1191 (1416)
T ss_pred CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEE
Confidence 22222222233211 123333 34666777889999998888777654321 2234556666665542
Q ss_pred ---------------HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003020 619 ---------------EEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVG 683 (856)
Q Consensus 619 ---------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 683 (856)
...++. .+.+.++.+...++..|.+..-++.--.+|+..... ...-|...-.+ .|
T Consensus 1192 FFAn~sRqkEiYImAANyLQt---lDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydKa---~g 1261 (1416)
T KOG3617|consen 1192 FFANTSRQKEIYIMAANYLQT---LDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDKA---MG 1261 (1416)
T ss_pred EEeeccccceeeeehhhhhhh---cccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhHH---hH
Confidence 222221 223445555555555554433333333333322211 11112211111 24
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH----------HHHHH-HcCCHHHHHHHHHHHHhCCC-----CCHHHHHHHHHH
Q 003020 684 YLKEAQETYKLLRSLEASPDVYTSNCM----------IDLYS-ERSMVRQAEEIFEIMKKKGD-----ANEFTYAMMLIM 747 (856)
Q Consensus 684 ~~~~A~~~~~~~~~~~~~p~~~~~~~l----------~~~~~-~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~ 747 (856)
-.++|-+.+.++...+. ....++.| ++... -..+..+.+.-.+.|..... +-...|..|+..
T Consensus 1262 Al~eA~kCl~ka~~k~~--~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~ 1339 (1416)
T KOG3617|consen 1262 ALEEAAKCLLKAEQKNM--STTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIED 1339 (1416)
T ss_pred HHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHH
Confidence 44555555555544221 11122222 11111 12245555556666665542 224578889999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003020 748 YKRNGRFEEATRIAKQMRESGLISDLLSY 776 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 776 (856)
+....+|..|-+.++++..+.|..|..+|
T Consensus 1340 ~v~~k~y~~AyRal~el~~k~p~~~~s~~ 1368 (1416)
T KOG3617|consen 1340 HVSRKNYKPAYRALTELQKKVPNVDLSTF 1368 (1416)
T ss_pred HHhhhhccHHHHHHHHHhhcCCccchhcc
Confidence 99999999999999999998877665554
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=1.7e-08 Score=103.62 Aligned_cols=118 Identities=12% Similarity=-0.047 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHhcCC-CCCC--HhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHH
Q 003020 441 MVCEAEELISEMDGGG-LEID--EYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERA 517 (856)
Q Consensus 441 ~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 517 (856)
..+.++.-+.+++... ..|+ ...+...+..+...|+.++|...|++.....|.+..+|..++..+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444555555554321 1111 233444555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 003020 518 FICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSH 558 (856)
Q Consensus 518 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 558 (856)
|+++.+..|.+..+|..++.++...|++++|++.|++..+.
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55555555555555555555555556666666666555543
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.15 E-value=1.7e-07 Score=100.37 Aligned_cols=304 Identities=11% Similarity=0.010 Sum_probs=175.5
Q ss_pred chhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 495 SEGYSANIDGYGERGHVLEAERAFICCQEGKKLT---VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLI 571 (856)
Q Consensus 495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 571 (856)
..++..++..+...|+.+++...+.......+.+ ..........+...|++++|...+++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 3344444444555555555544444443333222 2223333445566777778877777776652 223333332 1
Q ss_pred HHHH----cCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003020 572 QILA----GADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADV 647 (856)
Q Consensus 572 ~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 647 (856)
..+. ..+..+.+.+.+... ....+........+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 1222 234444444444431 11112223344556667888899999999999988865 33566778888888889
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHHcCCH
Q 003020 648 GNVKQAQSYFDAMESAGL-PPNA--VIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-SPDVYTS-N--CMIDLYSERSMV 720 (856)
Q Consensus 648 g~~~~A~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~ 720 (856)
|++++|..++++...... .|+. ..|..+...+...|++++|..+|++...... .+..... + .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999888876531 1222 3455778888889999999999988765322 1112111 1 223333344433
Q ss_pred HHHHHH---HHHHHhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcC
Q 003020 721 RQAEEI---FEIMKKKG--DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI--------SDLLSYNNVLGLYAVDG 787 (856)
Q Consensus 721 ~~A~~~---~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------p~~~~~~~l~~~~~~~g 787 (856)
+.+.+. ........ +.........+.++...|+.++|.+.++.+....-. .........+.++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 333222 11111111 122233346777888899999999999888664221 01233455567788999
Q ss_pred CHHHHHHHHHHHHHc
Q 003020 788 RFKDVIGTFKDMVNA 802 (856)
Q Consensus 788 ~~~~A~~~~~~~~~~ 802 (856)
++++|.+.+...+..
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988773
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.10 E-value=4.6e-07 Score=97.07 Aligned_cols=261 Identities=11% Similarity=0.001 Sum_probs=148.3
Q ss_pred HHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH----ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcC
Q 003020 503 DGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYG----MGRNYDKACNLFDSMTSHGAVPD-KCSYNSLIQILAGA 577 (856)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~ 577 (856)
..+...|++++|...+++..+..|.+...+.. ...+. ..+..+.+.+.+... ....|+ ......+...+...
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHc
Confidence 34445555556666555555555555544442 22222 233444444444431 112232 33444555677778
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHH
Q 003020 578 DLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVE-PDV--VVYGVLINAFADVGNVKQAQ 654 (856)
Q Consensus 578 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~ 654 (856)
|++++|...+++..+.. +.+...+..+...+...|++++|...+++.+..... ++. ..|..+...+...|++++|.
T Consensus 128 G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 128 GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888877764 334566777778888888888888888887765321 222 24556777788888888888
Q ss_pred HHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--H-HHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003020 655 SYFDAMESAGL-PPNAVIY-N--SLIKLYTKVGYLKEAQET--Y-KLLRSLEA-SPDVYTSNCMIDLYSERSMVRQAEEI 726 (856)
Q Consensus 655 ~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~ 726 (856)
.++++...... .+..... + .++.-+...|....+.++ . ........ ............++...|+.++|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 88888754321 1222211 1 223333344433333332 1 11111100 11112222456677788899999999
Q ss_pred HHHHHhCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 727 FEIMKKKGDA---------NEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 727 ~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
++.+...... ..........++...|++++|.+.+.+++..
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9887664322 2233445566677899999999999988865
No 97
>PF13041 PPR_2: PPR repeat family
Probab=99.09 E-value=2.9e-10 Score=81.00 Aligned_cols=50 Identities=40% Similarity=0.602 Sum_probs=43.7
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc
Q 003020 319 LSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGN 368 (856)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 368 (856)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57788999999999999999999999999988999999999999888864
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=4.5e-08 Score=92.55 Aligned_cols=288 Identities=12% Similarity=0.044 Sum_probs=136.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHH
Q 003020 467 LTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYD 546 (856)
Q Consensus 467 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 546 (856)
++..+.+..+++++++++...++..|.+......++.+|....++..|...|++.....|.-..--.--...+.+.+.+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence 33333444444444444444444444444444444444444444444444444444333322222222233444455555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH--HHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 547 KACNLFDSMTSHGAVPDKCSYNSLI--QILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKD 624 (856)
Q Consensus 547 ~A~~~~~~m~~~~~~p~~~~~~~ll--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (856)
+|+.+...|... |+...-..-+ ......+++-.+..++++.-.. .+..+.+.......+.|++++|++-|+.
T Consensus 96 DALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 96 DALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHH
Confidence 555555555432 1111110111 1122344444444444443321 1233333333444556666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCH---------------HHHHHHH
Q 003020 625 MIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLP-------------PNA---------------VIYNSLI 676 (856)
Q Consensus 625 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------p~~---------------~~~~~l~ 676 (856)
..+.+--.....|+.-+ +..+.|+++.|+++..++++.|+. ||+ ..+|.-.
T Consensus 170 AlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 65543233344555443 233445666666666666554432 111 1122222
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 677 KLYTKVGYLKEAQETYKLLRS-LEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFE 755 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 755 (856)
..+.+.|+++.|.+.+..|-- .....|++|...+.-. -..+++.+..+-++-++...|....++..++..||+..-++
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHh
Confidence 233456777777766655532 2223455555444321 12344555556666666666777777777777777777777
Q ss_pred HHHHHHH
Q 003020 756 EATRIAK 762 (856)
Q Consensus 756 ~A~~~~~ 762 (856)
.|..++.
T Consensus 328 lAADvLA 334 (459)
T KOG4340|consen 328 LAADVLA 334 (459)
T ss_pred HHHHHHh
Confidence 7766554
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=2.6e-07 Score=87.49 Aligned_cols=416 Identities=13% Similarity=0.076 Sum_probs=211.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHH
Q 003020 324 YNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNIL-IFLHA 402 (856)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~ 402 (856)
+++.+..+.+..++++|++++....+...+ +....+.|..+|....++..|...++++... .|...-|... ...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 445555555666677777766666554321 5556666666666666666666666666543 3443333322 24445
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHH
Q 003020 403 KNDKISMASRYFWKMKEANLEPDIVSYRTLLYA--YSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKS 480 (856)
Q Consensus 403 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 480 (856)
+.+.+.+|+++...|.+. |+...-..-+.+ ....+++..+..++++...
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-------------------------- 140 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-------------------------- 140 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC--------------------------
Confidence 556666666666555431 221111111111 1123333334333333321
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 003020 481 WLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLT-VLVFNVMVKAYGMGRNYDKACNLFDSMTSHG 559 (856)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 559 (856)
..+.++....+-...+.|+++.|.+-|..+.+-..-. ...||.- -+..+.|+++.|++...++.++|
T Consensus 141 -----------en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 141 -----------ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred -----------CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhh
Confidence 1223333444444555666666666666555443333 3444433 34446677888888888887776
Q ss_pred CCCCHHH----HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH
Q 003020 560 AVPDKCS----YNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFN-VEPDV 634 (856)
Q Consensus 560 ~~p~~~~----~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 634 (856)
++..+.. -.-.+++- .-|+. ..+.... =+..+|.-...+.+.|+++.|.+.+.+|-.+. ...|+
T Consensus 209 ~r~HPElgIGm~tegiDvr-svgNt---~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP 277 (459)
T KOG4340|consen 209 IRQHPELGIGMTTEGIDVR-SVGNT---LVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP 277 (459)
T ss_pred hhcCCccCccceeccCchh-cccch---HHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc
Confidence 6422110 00000000 00000 0011000 01234555556778899999998888875322 23467
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 003020 635 VVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEAS-PDVYTSNCMIDL 713 (856)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~ 713 (856)
+|...+.-.- ..+++.+...-+.-+...+ |-...||..++-.||+..-++-|-.++.+-...... .+...|+ ++++
T Consensus 278 vTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLda 354 (459)
T KOG4340|consen 278 VTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDA 354 (459)
T ss_pred hhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHH
Confidence 7776654222 2345666666666666654 345678999999999999999888886542221110 2233443 3333
Q ss_pred HH-HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003020 714 YS-ERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGR---FEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRF 789 (856)
Q Consensus 714 ~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 789 (856)
+. ..-..++|++-++.+...-..-......-+..-..+++ ...|++-|++.++. -.......++.|+...++
T Consensus 355 LIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy 430 (459)
T KOG4340|consen 355 LITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDY 430 (459)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcccccc
Confidence 33 34456666655544432110000000000111111111 23445555555554 223445567888999999
Q ss_pred HHHHHHHHHHHH
Q 003020 790 KDVIGTFKDMVN 801 (856)
Q Consensus 790 ~~A~~~~~~~~~ 801 (856)
..+.+.|....+
T Consensus 431 ~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 431 PMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHh
Confidence 999999998887
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=3.1e-08 Score=102.72 Aligned_cols=245 Identities=12% Similarity=0.038 Sum_probs=172.6
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 574 LAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQA 653 (856)
Q Consensus 574 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 653 (856)
+.+.|++.+|.-.|+..+++. +-+...|.-|.......++-..|+..+++.++..+ -|......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHH
Confidence 345566666666666666654 33556677777777777777777777777777642 3666777777777777777778
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 654 QSYFDAMESAGLPPNAVIYNSLI-------KLYTKVGYLKEAQETYKLL-RSLEASPDVYTSNCMIDLYSERSMVRQAEE 725 (856)
Q Consensus 654 ~~~~~~~~~~~~~p~~~~~~~l~-------~~~~~~g~~~~A~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 725 (856)
+.+++.-+...+ |-...-..-. ..+.....+....++|-.+ ...+..+|......|+-.|--.|++++|+.
T Consensus 373 l~~L~~Wi~~~p-~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 373 LKMLDKWIRNKP-KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHhCc-cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 777777654321 1000000000 0111112233444445444 345545777778889989999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-
Q 003020 726 IFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAI- 804 (856)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~- 804 (856)
.|+.++...|.|...|+.|+..++...+.++|+..|++++++.|. -..++++|+-.|+..|.|+||.+.|=.++...-
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999876 668889999999999999999999988766210
Q ss_pred --------CCCHHHHHHHHHHHHHcC
Q 003020 805 --------QPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 805 --------~p~~~~~~~l~~~~~~~G 822 (856)
.++...|..|-.++...+
T Consensus 531 s~~~~~~~~~se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 531 SRNHNKAPMASENIWQTLRLALSAMN 556 (579)
T ss_pred ccccccCCcchHHHHHHHHHHHHHcC
Confidence 122346777777777777
No 101
>PF13041 PPR_2: PPR repeat family
Probab=99.05 E-value=4.8e-10 Score=79.86 Aligned_cols=49 Identities=35% Similarity=0.497 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 003020 389 PDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYS 437 (856)
Q Consensus 389 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 437 (856)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666777777777777777777777777777777777777777776665
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=2.6e-08 Score=103.34 Aligned_cols=232 Identities=14% Similarity=0.084 Sum_probs=145.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHH
Q 003020 468 TRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDK 547 (856)
Q Consensus 468 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 547 (856)
+.-+.+.|++.+|.-.|+.....+|...++|..++......++-..|+..+.++.+..|.+..+.-.|.-.|...|.-.+
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 44456778888888888888888899999999999999999999999999999999988889999999999999998889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 003020 548 ACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMI- 626 (856)
Q Consensus 548 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 626 (856)
|+..++..+....+ |..+..+ ...++++.- +-.++.. .+....++|-++.
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~~----------~s~~~~~-------------~l~~i~~~fLeaa~ 422 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSA-GENEDFENT----------KSFLDSS-------------HLAHIQELFLEAAR 422 (579)
T ss_pred HHHHHHHHHHhCcc-----chhcccc-CccccccCC----------cCCCCHH-------------HHHHHHHHHHHHHH
Confidence 99998888765322 0000000 000000000 0001111 1222233333333
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H
Q 003020 627 RFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDV-Y 705 (856)
Q Consensus 627 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~ 705 (856)
..+..+|..+...|.-.|--.|.+++|...|+.++... |.|..+||-|+..+....+.++|++.|+++++ +.|.- .
T Consensus 423 ~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR 499 (579)
T KOG1125|consen 423 QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVR 499 (579)
T ss_pred hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeee
Confidence 22223555556666666666666666666666666553 44556666666666666666666666666666 33442 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMK 731 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 731 (856)
....|+-.|...|.+++|.+.|-+++
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 33344555666666666666665444
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.02 E-value=8.1e-09 Score=104.14 Aligned_cols=252 Identities=11% Similarity=0.057 Sum_probs=143.5
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH
Q 003020 540 GMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAE 619 (856)
Q Consensus 540 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 619 (856)
.-.|++..++.-.+ ........+......+.+++...|+++.++. .+.+.. .|.......+...+...++-+.++
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34566666665444 1111111122334445566666666554332 222222 444444444444333333445555
Q ss_pred HHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003020 620 EVYKDMIRFNVEPDVVVY-GVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL 698 (856)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 698 (856)
.-+++.......++..++ ......+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555444332222222222 22233455678888888776542 35566667778888888888888888888774
Q ss_pred CCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 699 EASPDVYTSNCMIDLYS----ERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLL 774 (856)
Q Consensus 699 ~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 774 (856)
..|.... .+..++. -...+.+|..+|+++.+..++++.+++.++.++...|++++|.++++++++.++. ++.
T Consensus 161 --~eD~~l~-qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d 236 (290)
T PF04733_consen 161 --DEDSILT-QLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPD 236 (290)
T ss_dssp --SCCHHHH-HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHH
T ss_pred --CCcHHHH-HHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHH
Confidence 3444332 3333332 2336888888888887777778888888888888888888888888888887776 778
Q ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCH
Q 003020 775 SYNNVLGLYAVDGRF-KDVIGTFKDMVNAAIQPDD 808 (856)
Q Consensus 775 ~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~ 808 (856)
+..+++.+....|+. +.+.+++.++... .|+.
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h 269 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNH 269 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTS
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCC
Confidence 888888888888887 5566677776663 4543
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.99 E-value=5.3e-05 Score=78.45 Aligned_cols=149 Identities=12% Similarity=0.175 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHH
Q 003020 545 YDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVS-DCIPYCAVISSYMKLGQLEMAEEVYK 623 (856)
Q Consensus 545 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 623 (856)
.+.....+++++..-...-..+|-..++...+..-+..|..+|.++.+.+..+ ++.++++++..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 34444444444443222223344455555555555555666666655554444 4445555555444 345555566655
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 624 DMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA--VIYNSLIKLYTKVGYLKEAQETYKLL 695 (856)
Q Consensus 624 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 695 (856)
--++. ...+..--...++.+...++-..|..+|++....+++|+. ..|..++..=..-|+...++++-+++
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 54443 1223333344555555555555566666665555444333 45555555555556655555555443
No 105
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.95 E-value=0.00015 Score=79.96 Aligned_cols=219 Identities=16% Similarity=0.128 Sum_probs=143.3
Q ss_pred cCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHH
Q 003020 171 QSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVC 250 (856)
Q Consensus 171 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 250 (856)
.+++..|++-.+...++.|..+-..++.++. +.|.|+.++|..+++..-..+.. |..|...+-.+|...|+.++|..
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 3577789999998888753333334444443 66899999999999887665555 88899999999999999999999
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHhcCChhH----HHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHH
Q 003020 251 WLERMNEGGMEPDEVTMGIVVQMYKKAGEFQK----AEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNT 326 (856)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (856)
+|+++.+. .|.......+..+|.+-+++.+ |.++++..++ .+..+=+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk---------------------------~~yyfWs 149 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK---------------------------RAYYFWS 149 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---------------------------ccchHHH
Confidence 99999876 5567777778888888777654 5555654332 2333333
Q ss_pred HHHHHHhcC-C---------HHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHhcCCCHHHHHHHHH-HHHhCCCCCCHHHH
Q 003020 327 LIDTYGKAG-Q---------LKEASETFAQMLREG-IVPTTVTFNTMIHIYGNNDQLAEVDSLIK-KMEELHCPPDTRTY 394 (856)
Q Consensus 327 li~~~~~~g-~---------~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~ 394 (856)
+++...+.- . ..-|...++.+.+.+ .--+..-...-...+..+|.+++|..++. ...+.-.+-+...-
T Consensus 150 V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~ 229 (932)
T KOG2053|consen 150 VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLE 229 (932)
T ss_pred HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHH
Confidence 344333321 1 123555566666543 11122222333345556788888888883 33333333344455
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcC
Q 003020 395 NILIFLHAKNDKISMASRYFWKMKEAN 421 (856)
Q Consensus 395 ~~li~~~~~~g~~~~A~~~~~~m~~~~ 421 (856)
+--+..+...+++.+-.++-.++..+|
T Consensus 230 ~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 230 NKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 566677788888888888888887765
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=4.4e-06 Score=101.67 Aligned_cols=269 Identities=14% Similarity=0.072 Sum_probs=164.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC---C--ChHhHHHH
Q 003020 535 MVKAYGMGRNYDKACNLFDSMTSHGAVPDK----CSYNSLIQILAGADLPHMAKRYLRKMQEAGLV---S--DCIPYCAV 605 (856)
Q Consensus 535 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~---~--~~~~~~~l 605 (856)
+...+...|++++|...+++....-...+. ...+.+...+...|+++.|...+.+.....-. + ...++..+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 334555677888888887776653111121 23445555666788888888877776543111 1 12234555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CHHHHHH
Q 003020 606 ISSYMKLGQLEMAEEVYKDMIRF----NVE--P-DVVVYGVLINAFADVGNVKQAQSYFDAMESA--GLPP--NAVIYNS 674 (856)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p--~~~~~~~ 674 (856)
...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 66677788888888887776542 111 1 1233445555666778888888888776542 1112 2334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH----HHHHH
Q 003020 675 LIKLYTKVGYLKEAQETYKLLRSLEA-SPDVYTS-----NCMIDLYSERSMVRQAEEIFEIMKKKGDANEF----TYAMM 744 (856)
Q Consensus 675 l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l 744 (856)
+...+...|++++|...++.+..... ......+ ...+..+...|+.+.|.+.+.......+.... .+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 66677788888888888877754211 1111111 11223445578888888887765543222221 24567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003020 745 LIMYKRNGRFEEATRIAKQMRES----GLISD-LLSYNNVLGLYAVDGRFKDVIGTFKDMVNAA 803 (856)
Q Consensus 745 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 803 (856)
+.++...|++++|...++++... +..++ ..++..++.++.+.|+.++|...+.++++..
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77888888999998888888764 22111 2456777888889999999999998888753
No 107
>PLN02789 farnesyltranstransferase
Probab=98.93 E-value=1e-06 Score=90.15 Aligned_cols=218 Identities=9% Similarity=-0.006 Sum_probs=155.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HHH
Q 003020 577 ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLG-QLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNV--KQA 653 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A 653 (856)
.+..++|+....++++.. +-+..+|+....++...| ++++++..++++.+.++ .+..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHHH
Confidence 445566666666666643 223334555555555666 57888888888887653 3666777666556666653 677
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CC----HHHHHHH
Q 003020 654 QSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSER---SM----VRQAEEI 726 (856)
Q Consensus 654 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~ 726 (856)
+.+++++++.+ +-|..+|+....++...|+++++++.++++++.++ .+...|+....++... |. .++++++
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 88888888775 56788888888888888889999999988888654 3455566655555443 22 3567888
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------------
Q 003020 727 FEIMKKKGDANEFTYAMMLIMYKRN----GRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDG--------------- 787 (856)
Q Consensus 727 ~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------------- 787 (856)
..+++...|.|..+|+.+..++... ++..+|.+.+.++...++. ++.....|+..|+...
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 8888888899999999999998873 4456798999888887776 7788889999988643
Q ss_pred ---CHHHHHHHHHHH
Q 003020 788 ---RFKDVIGTFKDM 799 (856)
Q Consensus 788 ---~~~~A~~~~~~~ 799 (856)
..++|.++++.+
T Consensus 285 ~~~~~~~a~~~~~~l 299 (320)
T PLN02789 285 ELSDSTLAQAVCSEL 299 (320)
T ss_pred ccccHHHHHHHHHHH
Confidence 235677777776
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.92 E-value=2e-07 Score=88.77 Aligned_cols=127 Identities=7% Similarity=0.006 Sum_probs=95.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-HHcCC--HHHHH
Q 003020 682 VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY-KRNGR--FEEAT 758 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~ 758 (856)
.++.++++..++...+.. +.+...|..++..|...|++++|...++++.+..|.+...+..++.++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 556677777777766644 256677778888888888888888888888888888888888888764 56666 48888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003020 759 RIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTF 811 (856)
Q Consensus 759 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 811 (856)
++++++++.+|. ++.++..++..+.+.|++++|+..|+++++. ..|+...+
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRT 181 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH
Confidence 888888888877 7788888888888888888888888888775 24444333
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=1.4e-07 Score=100.42 Aligned_cols=221 Identities=17% Similarity=0.150 Sum_probs=176.7
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003020 561 VPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVL 640 (856)
Q Consensus 561 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 640 (856)
+|--..-..+...+.+.|-...|..+++++.. |..++.+|...|+..+|..+..+-++. +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 34344445566778888888888888887643 677788899999999999988888773 6788899888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 003020 641 INAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMV 720 (856)
Q Consensus 641 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 720 (856)
++......-+++|.++++..... .-..+.....+.++++++.+.|+...+... .-..+|-.+.-+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhh
Confidence 88887777788888888765432 112222233447899999999988777432 3456777788888889999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 721 RQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 721 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 800 (856)
+.|.+.|.......|.+...|+++..+|.+.|+-.+|...++++++.+-. +...|.+.+......|.+++|++.++++.
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998844 77889888889999999999999999987
Q ss_pred H
Q 003020 801 N 801 (856)
Q Consensus 801 ~ 801 (856)
+
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 7
No 110
>PLN02789 farnesyltranstransferase
Probab=98.89 E-value=8.9e-07 Score=90.63 Aligned_cols=207 Identities=14% Similarity=0.141 Sum_probs=167.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-
Q 003020 608 SYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVG-NVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYL- 685 (856)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~- 685 (856)
.+...++.++|+.+..++++.++ -+..+|+....++...| ++++++..++++.+.+ +.+..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 34456789999999999998753 35668887777777777 6799999999999875 56777888777777777763
Q ss_pred -HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc---CCH----HHH
Q 003020 686 -KEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN---GRF----EEA 757 (856)
Q Consensus 686 -~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A 757 (856)
++++.+++++++... -+...|+....++...|++++|++.++++++.++.|..+|+....++.+. |.. +++
T Consensus 124 ~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 124 ANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred hHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 678999999988553 45778888888999999999999999999999999999999999888765 323 578
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH
Q 003020 758 TRIAKQMRESGLISDLLSYNNVLGLYAVD----GRFKDVIGTFKDMVNAAIQPD-DFTFKSLGAVLMK 820 (856)
Q Consensus 758 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~ 820 (856)
+.+..++++..|. +...|+.+..++... ++..+|.+.+.+..+. .|+ ...+..|+..+..
T Consensus 203 l~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHHh
Confidence 8888899999998 889999999999873 4567799999887774 444 4558888888875
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.88 E-value=1e-07 Score=85.83 Aligned_cols=114 Identities=9% Similarity=-0.099 Sum_probs=84.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 690 ETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 690 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
..|++.++ ..|+. +..+...+...|++++|...|+.+....|.+..+|..++.++...|++++|+..|+++++.+|
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 44555555 22443 345666777788888888888888887788888888888888888888888888888888777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 770 ISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFT 810 (856)
Q Consensus 770 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 810 (856)
. ++..+..++.++...|++++|+..|++.++. .|+...
T Consensus 90 ~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~ 127 (144)
T PRK15359 90 S-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADAS 127 (144)
T ss_pred C-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChH
Confidence 6 7788888888888888888888888887773 565443
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.87 E-value=4.9e-06 Score=101.25 Aligned_cols=335 Identities=13% Similarity=0.021 Sum_probs=195.1
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---------CchhhHHHHHHHh
Q 003020 436 YSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDM---------SSEGYSANIDGYG 506 (856)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~ 506 (856)
....|+++.+...+..+.......++.........+...|+++++..+++.+...... ...........+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3345666665555554421111112223333444555667777777766655432110 0111222344556
Q ss_pred hcCCHHHHHHHHHHHhcCCCC-c----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHc
Q 003020 507 ERGHVLEAERAFICCQEGKKL-T----VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGA---VP--DKCSYNSLIQILAG 576 (856)
Q Consensus 507 ~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~ 576 (856)
..|++++|...++......+. + ....+.+...+...|++++|...+.+...... .+ ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 777888888777776543221 1 23455666677788888888888887764311 11 12344556667778
Q ss_pred CCChHHHHHHHHHHHHc----CCC--C-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHH
Q 003020 577 ADLPHMAKRYLRKMQEA----GLV--S-DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFN--VEP--DVVVYGVLINAFA 645 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~~ 645 (856)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 88888888888776542 211 1 12234455566777789999988888776431 111 2334455666777
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCCCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHH
Q 003020 646 DVGNVKQAQSYFDAMESA--GLPPNAV--IY--NSLIKLYTKVGYLKEAQETYKLLRSLEASPD---VYTSNCMIDLYSE 716 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~--~~~p~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~ 716 (856)
..|++++|...+++.... ....... .. ...+..+...|+.+.|..++........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 888999998888777442 1111111 00 1122344557888888888766543211111 1113456667788
Q ss_pred cCCHHHHHHHHHHHHhCC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 717 RSMVRQAEEIFEIMKKKG-----D-ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.|++++|...++++.... + ....+...++.++...|+.++|...+.++++....
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 889999988888876543 1 12346667788888999999999999998876543
No 113
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=9.9e-08 Score=96.33 Aligned_cols=250 Identities=14% Similarity=0.081 Sum_probs=163.7
Q ss_pred hcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 003020 507 ERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRY 586 (856)
Q Consensus 507 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~ 586 (856)
-.|.+..++.-.+...............+.+++...|+++.++. ++... -.|.......+...+...++.+.+..-
T Consensus 13 y~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 13 YLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp CTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHHHHH
Confidence 34555555543331111111234555666778888888775443 33332 256666665555555444555555555
Q ss_pred HHHHHHcCCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003020 587 LRKMQEAGLV-SDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGL 665 (856)
Q Consensus 587 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 665 (856)
++........ .+.........++...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.+
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~- 161 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID- 161 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 5444333322 23333344445667789999999887653 366777778889999999999999999998753
Q ss_pred CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Q 003020 666 PPNAVIYNSLIKLYT----KVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTY 741 (856)
Q Consensus 666 ~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 741 (856)
.|. +...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.++++++...+|.++.++
T Consensus 162 -eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 -EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp -CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred -CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 343 3444444443 234799999999998763 457888889999999999999999999999998889999999
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHcCCC
Q 003020 742 AMMLIMYKRNGRF-EEATRIAKQMRESGLI 770 (856)
Q Consensus 742 ~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~ 770 (856)
..++.+....|+. +.+.+.+.++....|.
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 9999999999988 6788899998887665
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.86 E-value=1e-06 Score=99.42 Aligned_cols=135 Identities=10% Similarity=0.049 Sum_probs=105.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHH
Q 003020 665 LPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAM 743 (856)
Q Consensus 665 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 743 (856)
++.++..+..|.....+.|.+++|..+++.+.+ +.|| ......++.++.+.+++++|+..+++.....|.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 456677788888888888888888888888877 3455 3355567777888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 744 MLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 744 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
++.++.+.|++++|+.+|++++..+|. ++.++..++.++...|+.++|...|++.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888888876655 5778888888888888888888888888773
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.85 E-value=5.1e-07 Score=90.12 Aligned_cols=186 Identities=12% Similarity=-0.007 Sum_probs=120.0
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HH
Q 003020 597 SDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVE-PD-VVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA---VI 671 (856)
Q Consensus 597 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~ 671 (856)
.....+..++..+...|++++|...|+++....+. |. ..++..+..++...|++++|...++++.+.. |.+. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 34555666777777778888888888877765321 11 1356667777777788888888888777653 2122 24
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHH
Q 003020 672 YNSLIKLYTKV--------GYLKEAQETYKLLRSLEASPDVY-TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYA 742 (856)
Q Consensus 672 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 742 (856)
+..++.++... |++++|.+.|+.+.+.. |+.. .+..+..... ..... .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~-------------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL-------------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH-------------HHHHH
Confidence 55555555544 56777777777776632 3321 1211111100 00000 01123
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 743 MMLIMYKRNGRFEEATRIAKQMRESGLI-S-DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 743 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
.++..+.+.|++++|+..++++++..|. | .+..+..++.++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5677889999999999999999988664 2 3578999999999999999999999888764
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.84 E-value=7e-07 Score=84.14 Aligned_cols=164 Identities=13% Similarity=0.092 Sum_probs=134.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 633 DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMID 712 (856)
Q Consensus 633 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 712 (856)
|... ..+-..+...|+-+....+....... .+.+.......+....+.|++.+|+..+++..... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3334 55667777888888888887776544 25566677778888899999999999999888754 377888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 713 LYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 792 (856)
+|.+.|+.++|..-|.++.+..+.++.+.++|+..+.-.|+++.|..++......++. |...-.++..+....|++++|
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHH
Confidence 9999999999999999999988999999999999999999999999999998887766 778888888888999999999
Q ss_pred HHHHHHHH
Q 003020 793 IGTFKDMV 800 (856)
Q Consensus 793 ~~~~~~~~ 800 (856)
..+...-+
T Consensus 222 ~~i~~~e~ 229 (257)
T COG5010 222 EDIAVQEL 229 (257)
T ss_pred Hhhccccc
Confidence 87765543
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.81 E-value=3.7e-07 Score=82.21 Aligned_cols=125 Identities=8% Similarity=-0.100 Sum_probs=103.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003020 655 SYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG 734 (856)
Q Consensus 655 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 734 (856)
.++++.+.. .|+ .+..++.++...|++++|...|+.+....+ .+...|..++.++...|++++|...|+++....
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 455666554 244 355677888899999999999999888543 467788889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003020 735 DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV 785 (856)
Q Consensus 735 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 785 (856)
|.++.++..++.++...|++++|+..|+++++..|. ++..|...+.+...
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQNAQIM 138 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887 77888777766543
No 118
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.78 E-value=0.00041 Score=72.10 Aligned_cols=186 Identities=15% Similarity=0.164 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 615 LEMAEEVYKDMIRFNVEPDVVVYGVLINAFADV---GNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQET 691 (856)
Q Consensus 615 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 691 (856)
.+++..++++....-...+..+|..+...--.. ++.+.....++++...-...-..+|...++.-.+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 456677777766432233444444443321111 13556667777776542222235677788888888889999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 692 YKLLRSLEASP-DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 692 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
|.++.+.+..+ ++..+++++.-+| .++.+-|.++|+-=++..+.++.--...+.-+...|+-.-|..+|++++..+..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 99999876666 6778888887666 578899999999988888888888888888888999999999999999988555
Q ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 771 SD--LLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 771 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
|+ ...|..++..-..-|+...++++-+++..
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 44 37899999988899999999999888766
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=7.6e-06 Score=87.67 Aligned_cols=222 Identities=15% Similarity=0.149 Sum_probs=160.5
Q ss_pred CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 003020 457 LEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMV 536 (856)
Q Consensus 457 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 536 (856)
.+|-...-..+...+.+.|-...|..+|+++. .|...+.+|...|+..+|..+..+..+ .++++..|..++
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 44555566777788888888888888888875 577778888888888888888777777 677888888888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHH
Q 003020 537 KAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLE 616 (856)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 616 (856)
++.....-+++|.++++..... .-..+.....+.++++++.+.++...+.. +.-..+|-.+..+..+.+++.
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 8888777788888887764332 11222222334677777877777766654 335566777777777788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 617 MAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLR 696 (856)
Q Consensus 617 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 696 (856)
.|.+.|....... +-+...||.+-.+|.+.++-.+|...+.+..+-+ ..+...|...+-...+.|.+++|++.+.++.
T Consensus 537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 8888888877642 2245588888888888888888888888887766 4455666666666777888888888887776
Q ss_pred h
Q 003020 697 S 697 (856)
Q Consensus 697 ~ 697 (856)
.
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 5
No 120
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=1.4e-05 Score=74.77 Aligned_cols=187 Identities=14% Similarity=0.157 Sum_probs=131.4
Q ss_pred CCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 613 GQLEMAEEVYKDMIR---FN-VEPDVV-VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKE 687 (856)
Q Consensus 613 g~~~~A~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 687 (856)
.+.++.++++..++. .| ..++.. .|..++-+....|+.+.|..+++.+... +|-+...-..-...+...|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 356666666666653 22 344443 4555666667778888888888887765 34344444444445566788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 688 AQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 688 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
|+++|+..++.+ +.|.+++-.-+...-..|+.-+|++-+....+..+.|..+|.-+...|...|+++.|.-.+++++-.
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 888888887755 3455566655666666777778888888888888888888888888888888888888888888888
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHc
Q 003020 768 GLISDLLSYNNVLGLYAVDGR---FKDVIGTFKDMVNA 802 (856)
Q Consensus 768 ~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~ 802 (856)
.|. ++..+..++..+.-.|- .+-|.++|.+.++.
T Consensus 184 ~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 QPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred CCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 776 77777777777766653 45677788877763
No 121
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.72 E-value=4.9e-07 Score=81.23 Aligned_cols=120 Identities=12% Similarity=0.066 Sum_probs=96.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 691 TYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 691 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.|+.+.+... .+......++..+...|++++|.+.++.+...+|.++..|..++..+...|++++|..+++++++.+|.
T Consensus 5 ~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 5 TLKDLLGLDS-EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hHHHHHcCCh-hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4555555332 234455677778888999999999999998888889999999999999999999999999999988876
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 771 SDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSL 814 (856)
Q Consensus 771 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 814 (856)
++..+..++.+|...|++++|+..+++.++. .|+...+..+
T Consensus 84 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 84 -DPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence 7888899999999999999999999998884 5666554433
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.71 E-value=2.4e-06 Score=81.43 Aligned_cols=151 Identities=12% Similarity=0.131 Sum_probs=120.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003020 606 ISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYL 685 (856)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 685 (856)
+-.|...|+++.+....+.+.. |. ..+...++.+++...+++..+.+ |.+...|..++..|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3457888888876555433321 11 01223667788888888888775 78889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCC--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003020 686 KEAQETYKLLRSLEASPDVYTSNCMIDL-YSERSM--VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAK 762 (856)
Q Consensus 686 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 762 (856)
++|...|++..+... .+...+..+..+ +...|+ .++|.++++++.+.+|.++.++..++..+...|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999988553 356677777776 467777 5999999999999999999999999999999999999999999
Q ss_pred HHHHcCCC
Q 003020 763 QMRESGLI 770 (856)
Q Consensus 763 ~~~~~~~~ 770 (856)
++++..+.
T Consensus 169 ~aL~l~~~ 176 (198)
T PRK10370 169 KVLDLNSP 176 (198)
T ss_pred HHHhhCCC
Confidence 99998765
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.69 E-value=5.1e-06 Score=78.47 Aligned_cols=157 Identities=13% Similarity=0.037 Sum_probs=132.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003020 668 NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM 747 (856)
Q Consensus 668 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 747 (856)
|... ..+-..+...|+-+.+..+....... ...|.......+....+.|++.+|+..+.++....|+|..+|+.++.+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 4444 66677788889888888887765432 234556666788899999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-HHHH
Q 003020 748 YKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG-LELT 826 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G-~~~~ 826 (856)
|.+.|++++|..-|.++++..+. ++...++++..|.-.|+.+.|..++......+ .-|...-..|..+....| +.+.
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHH
Confidence 99999999999999999999988 89999999999999999999999999998854 335566778888888999 4444
Q ss_pred Hh
Q 003020 827 RK 828 (856)
Q Consensus 827 ~~ 828 (856)
++
T Consensus 222 ~~ 223 (257)
T COG5010 222 ED 223 (257)
T ss_pred Hh
Confidence 43
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.69 E-value=7.5e-06 Score=93.13 Aligned_cols=149 Identities=11% Similarity=0.091 Sum_probs=67.7
Q ss_pred CCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 493 MSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQ 572 (856)
Q Consensus 493 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 572 (856)
.+..+|..++..+...+++++|.++.+...+..|.....|..++..+.+.++++++..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------
Confidence 34444455555555555555555555544444444444444444444444444443333 1111
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 573 ILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQ 652 (856)
Q Consensus 573 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 652 (856)
......++.....+...+.+. ..+...+..+..+|-+.|+.++|..+|+++++.. +.|+.+.|.+...|... +.++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 111112222222222222221 1222344555555555555555555555555554 23555555555555555 5555
Q ss_pred HHHHHHHHHH
Q 003020 653 AQSYFDAMES 662 (856)
Q Consensus 653 A~~~~~~~~~ 662 (856)
|.+++.+...
T Consensus 168 A~~m~~KAV~ 177 (906)
T PRK14720 168 AITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 125
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.67 E-value=0.0014 Score=72.47 Aligned_cols=94 Identities=21% Similarity=0.259 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 707 SNCMIDLYSERSMV---RQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 707 ~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
-+.|++.|.+.++. -+|+-+++.-....|.|..+-..+++.|+--|-+..|.++|+.+.-+.+..|...|. +...+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 34556666665553 356666666666667777777777777777777777777777666555554433332 23445
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003020 784 AVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 784 ~~~g~~~~A~~~~~~~~~ 801 (856)
...|++..+...++....
T Consensus 518 ~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HhcccchhHHHHHHHHHH
Confidence 566777777666666555
No 126
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.66 E-value=2.7e-06 Score=84.87 Aligned_cols=188 Identities=13% Similarity=0.045 Sum_probs=137.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-C-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 003020 562 PDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLV-S-DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDV--VVY 637 (856)
Q Consensus 562 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~ 637 (856)
.....+..++..+...|+++.|...++++.+.... | ...++..+..++.+.|++++|...++++++..+.... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35667888888999999999999999999886422 1 1246788889999999999999999999986543222 245
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003020 638 GVLINAFADV--------GNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNC 709 (856)
Q Consensus 638 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 709 (856)
..+..++... |++++|.+.|+++.... |.+...+..+..... .... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------LA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------HH--------HHHHH
Confidence 5566666654 78899999999998863 333333332222111 1110 00 01225
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDA---NEFTYAMMLIMYKRNGRFEEATRIAKQMRESG 768 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 768 (856)
+...+...|++++|+..++++.+..|. .+..+..++.++...|++++|..+++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 667789999999999999999988644 45789999999999999999999998887654
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.64 E-value=1.7e-05 Score=90.67 Aligned_cols=217 Identities=13% Similarity=0.097 Sum_probs=110.9
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003020 482 LWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKL-----TVLVFNVMVKAYGMGRNYDKACNLFDSMT 556 (856)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 556 (856)
+-|+++...+|.++-.|...+....+.++.+.|+++++++.....+ -..+|.++++....-|.-+...++|+++.
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 3345555555666666666666666666666666666655543311 13455555555555555555556666555
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHH
Q 003020 557 SHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEP-DVV 635 (856)
Q Consensus 557 ~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~ 635 (856)
+. -..-..|..|...|.+.+++++|.++++.|.+.- .-...+|...+..+.++.+-++|..++.++++.-++. .+.
T Consensus 1525 qy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1525 QY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred Hh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 43 1112334555555555555555555555555442 2344455555555555555555555555555431110 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASP 702 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 702 (856)
...-.+..-.+.|+.+++..+|+..... .|--...|+..++.-.++|+.+.+..+|+++...++.|
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 2233333334455555555555555544 23344555555555555555555555555555544433
No 128
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.64 E-value=2e-05 Score=90.19 Aligned_cols=242 Identities=10% Similarity=0.039 Sum_probs=156.7
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 003020 516 RAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGL 595 (856)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 595 (856)
+-|++.....|.+...|-..+......++.++|.+++++.+.. +.+. ++.
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~R-----------------Eee------------ 1494 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFR-----------------EEE------------ 1494 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcc-----------------hhH------------
Confidence 3444444455555666666666666666666666666665543 1110 000
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003020 596 VSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSL 675 (856)
Q Consensus 596 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 675 (856)
--...|.++++.-..-|.-+...++|+++.+. -.....|..|...|.+.+++++|.++++.|.+. +......|...
T Consensus 1495 -EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y 1570 (1710)
T KOG1070|consen 1495 -EKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMY 1570 (1710)
T ss_pred -HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHH
Confidence 01123555555555566677778888888763 223446777888888888888888888888765 34566778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH
Q 003020 676 IKLYTKVGYLKEAQETYKLLRSLEAS-PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRF 754 (856)
Q Consensus 676 ~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 754 (856)
+..+.++.+-+.|..+++++++.-++ -........+..-.+.|+.+.+..+|+..+...|.-...|+..++.-.++|+.
T Consensus 1571 ~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1571 ADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred HHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCH
Confidence 88888888888888888877763211 12333444555566788888888888888887777778888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 003020 755 EEATRIAKQMRESGLISDL--LSYNNVLGLYAVDGRFKD 791 (856)
Q Consensus 755 ~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 791 (856)
+.+..+|++++++++.|-- ..|.-.+..--..|+-+.
T Consensus 1651 ~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1651 KYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 8888888888888776533 233444433334455433
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.61 E-value=1.8e-05 Score=89.43 Aligned_cols=133 Identities=11% Similarity=0.087 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 633 DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMID 712 (856)
Q Consensus 633 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 712 (856)
+...+..|.....+.|.+++|..+++...+.. |.+......++..+.+.+++++|+..+++...... .+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHH
Confidence 34444444445555555555555555554432 22334444444445555555555555554444221 12223334444
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 713 LYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
++.+.|++++|.++|+++...+|.++.++..++.++...|+.++|...|+++++.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555555555555444444455555555555555555555555555443
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=5.4e-05 Score=70.90 Aligned_cols=173 Identities=14% Similarity=0.134 Sum_probs=128.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003020 602 YCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK 681 (856)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 681 (856)
|..++-+....|+.+-|...++.+...- +-+..+-..-.-.+-..|++++|+++++.+++.+ |.|.+++---+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 4444555566778888888888877652 2222222222223556788899999999988876 6777788777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC---CHHHHH
Q 003020 682 VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG---RFEEAT 758 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~ 758 (856)
+|+.-+|++-+....+. +..|...|.-+...|...|++++|.--++++.-..|.++..+..++..+...| +.+-|.
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888888888777764 34788889999999999999999999999999888999988888888877665 577889
Q ss_pred HHHHHHHHcCCCCCHHHHHH
Q 003020 759 RIAKQMRESGLISDLLSYNN 778 (856)
Q Consensus 759 ~~~~~~~~~~~~p~~~~~~~ 778 (856)
++|.+.++..+. +...+..
T Consensus 212 kyy~~alkl~~~-~~ral~G 230 (289)
T KOG3060|consen 212 KYYERALKLNPK-NLRALFG 230 (289)
T ss_pred HHHHHHHHhChH-hHHHHHH
Confidence 999999998764 5444433
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=2.7e-05 Score=80.04 Aligned_cols=148 Identities=16% Similarity=0.123 Sum_probs=118.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHH
Q 003020 643 AFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSMVR 721 (856)
Q Consensus 643 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 721 (856)
.+...|++++|+..++.+++. .|.|+..+....+.+...++.++|.+.++++.... |+ ....-.+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChH
Confidence 455678899999999998876 36677777788888999999999999999988843 55 556667888899999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 722 QAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 722 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+|+.+++......|.|+..|..|+.+|...|+..+|...+ +..|...|+|++|+..+....+
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999888999999999999999999887776544 3456778999999999988877
Q ss_pred cCCCCCHHHHH
Q 003020 802 AAIQPDDFTFK 812 (856)
Q Consensus 802 ~g~~p~~~~~~ 812 (856)
. ++++..+|.
T Consensus 454 ~-~~~~~~~~a 463 (484)
T COG4783 454 Q-VKLGFPDWA 463 (484)
T ss_pred h-ccCCcHHHH
Confidence 5 355555543
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=2.9e-05 Score=73.22 Aligned_cols=244 Identities=12% Similarity=0.083 Sum_probs=150.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH-H
Q 003020 542 GRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAE-E 620 (856)
Q Consensus 542 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~ 620 (856)
.|.+..++..-....... .+...-.-+.++|...|++.....- +.... .|.......+......-++.+.-+ +
T Consensus 21 ~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred hhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 455665555444433221 2333334455566666655433221 11111 233333333333333334433333 3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003020 621 VYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA 700 (856)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 700 (856)
+.+.+.......+......-...|++.|++++|+...+... +......=+..+.+..+.+-|.+.+++|.+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 34444433333333333334456888899999998877621 2233333345566778888899999888873
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003020 701 SPDVYTSNCMIDLYSE----RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSY 776 (856)
Q Consensus 701 ~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 776 (856)
.+..+.+.|..++.+ .+.+.+|.-+|+++.++.+|++.+.+.++.++...|++++|..+++.++...++ ++.+.
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL 244 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETL 244 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHH
Confidence 344566666666643 457889999999999888999999999999999999999999999999999887 88888
Q ss_pred HHHHHHHHhcCCHHHHH-HHHHHHHH
Q 003020 777 NNVLGLYAVDGRFKDVI-GTFKDMVN 801 (856)
Q Consensus 777 ~~l~~~~~~~g~~~~A~-~~~~~~~~ 801 (856)
.+++.+-...|+..++. +...++..
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 88887777778775543 44444444
No 133
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.52 E-value=0.0019 Score=65.91 Aligned_cols=263 Identities=13% Similarity=0.086 Sum_probs=146.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHH--
Q 003020 165 SIILKEQSSWERALEIFEWFKRQECHELN----VIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDV-- 238 (856)
Q Consensus 165 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-- 238 (856)
+.++..++++.+|..+|.++-+.....|. ....+.++++|.. .+.+.....+....+.. | ...|..+..+
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~ 88 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALV 88 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHH
Confidence 56788899999999999987654311221 3446678888875 44666666666555532 2 3455555554
Q ss_pred HHcCCCHHHHHHHHHHHHhC--CCC------------ccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhh
Q 003020 239 CSKGGLKEEAVCWLERMNEG--GME------------PDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKT 304 (856)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~~--~~~------------~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 304 (856)
+.+.+.+.+|++.+..-... +.. +|-..-+..++.+...|++.+++.+++++..+
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~----------- 157 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER----------- 157 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-----------
Confidence 56889999999998877654 222 12333456677888999999999999988532
Q ss_pred hhhhhccCCcCCCCcCHhHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHC------CCCCCHHhHHHHH
Q 003020 305 MIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQ---------------LKEASETFAQMLRE------GIVPTTVTFNTMI 363 (856)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------------~~~A~~~~~~~~~~------g~~p~~~~~~~ll 363 (856)
...+....++.+||.++-.+.+.=- ++.+.-...+|... .+.|.......++
T Consensus 158 -------llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~im 230 (549)
T PF07079_consen 158 -------LLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIM 230 (549)
T ss_pred -------HhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHH
Confidence 1133344677888886655544311 11122222222211 1223333333333
Q ss_pred HHHhcC-----CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCC----CCHHhHHHHH
Q 003020 364 HIYGNN-----DQLAEVDSLIKKMEELHCPPDT-RTYNILIFLHAKNDKISMASRYFWKMKEANLE----PDIVSYRTLL 433 (856)
Q Consensus 364 ~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~ll 433 (856)
....-. .-+-.+.+.++. .-+.|+. .+...++..+.+ +.+++..+-+.+....+. .-..++..++
T Consensus 231 qhlfi~p~e~l~~~mq~l~~We~---~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~L 305 (549)
T PF07079_consen 231 QHLFIVPKERLPPLMQILENWEN---FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLL 305 (549)
T ss_pred HHHHhCCHhhccHHHHHHHHHHh---hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 332211 111123333322 2233433 233444444444 444444444433322111 1245677788
Q ss_pred HHHHhcCCHHHHHHHHHHHhc
Q 003020 434 YAYSIRRMVCEAEELISEMDG 454 (856)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~ 454 (856)
....+.++..+|.+.+.-+.-
T Consensus 306 s~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 306 SFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHh
Confidence 888888888888888776654
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=4.7e-05 Score=86.87 Aligned_cols=236 Identities=10% Similarity=0.023 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcc
Q 003020 463 TQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMG 542 (856)
Q Consensus 463 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 542 (856)
.+..++..+...+++++|..+.+......|.....|..++..+.+.++..++..+ .+++.....
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~~~~~~ 96 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL----------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh----------------hhhhhcccc
Confidence 4444555555555555555555544445555555555555555555554333222 333444444
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 003020 543 RNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVY 622 (856)
Q Consensus 543 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 622 (856)
.++.-...++..|.+. .-+...+..+..+|-+.|+.+++..+++++++.. +-|+.+.|.+...|... ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 5554444444455543 2344466667777777777777777777777765 44666677777777777 777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003020 623 KDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASP 702 (856)
Q Consensus 623 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 702 (856)
.+++.. +...+++..+.++|.++.... +.+...+..+.+..... .+..-
T Consensus 173 ~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~---------------~~~~~ 221 (906)
T PRK14720 173 KKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGH---------------REFTR 221 (906)
T ss_pred HHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhh---------------hccch
Confidence 776542 455556677777777776653 22333332222222111 11111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003020 703 DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYK 749 (856)
Q Consensus 703 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 749 (856)
-+.++-.+...|...++++++..+++.+++..+.|..+..-++.+|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22234444455666666677777777777666666666666666665
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.00016 Score=68.31 Aligned_cols=155 Identities=15% Similarity=0.125 Sum_probs=88.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 003020 606 ISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK---- 681 (856)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 681 (856)
...|+..|++++|++...... ..+....+ ...+.+..+.+-|...+++|.+.+ +..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 344556666666666555421 11222222 223445556666666666666532 44555555555543
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHH-HHHH
Q 003020 682 VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEE-ATRI 760 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~ 760 (856)
.+++.+|.-+|++|.+. ..|+..+.+-...++...|++++|..+++.++.+.+.++.++..++.+-...|...+ -.+.
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 24566666666666552 336666666666666667777777777777777666666666666666666665433 3455
Q ss_pred HHHHHHcCCC
Q 003020 761 AKQMRESGLI 770 (856)
Q Consensus 761 ~~~~~~~~~~ 770 (856)
..++....|+
T Consensus 265 l~QLk~~~p~ 274 (299)
T KOG3081|consen 265 LSQLKLSHPE 274 (299)
T ss_pred HHHHHhcCCc
Confidence 5566555544
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.45 E-value=9e-06 Score=72.98 Aligned_cols=113 Identities=11% Similarity=-0.018 Sum_probs=89.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003020 656 YFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD 735 (856)
Q Consensus 656 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 735 (856)
.++++.... +.+......++..+...|++++|.+.|+.+...+. .+...+..+...+...|++++|...++.+....|
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455555543 33445666777788888889999888888877542 4566777888888888999999999998888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 736 ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 736 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.++..+..++.++...|++++|.+.++++++..|.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 88888888999999999999999999999888765
No 137
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.44 E-value=5.3e-06 Score=73.02 Aligned_cols=96 Identities=10% Similarity=-0.052 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV 785 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 785 (856)
..-.+...+...|++++|..+|+.+...+|.+...|..|+.++...|++++|+..|.++...+|. |+..+.+++.++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 33455666778999999999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred cCCHHHHHHHHHHHHHc
Q 003020 786 DGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 786 ~g~~~~A~~~~~~~~~~ 802 (856)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999998884
No 138
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=2.4e-06 Score=82.18 Aligned_cols=112 Identities=16% Similarity=0.009 Sum_probs=69.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 676 IKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFE 755 (856)
Q Consensus 676 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 755 (856)
+.-..+.++|.+|+..|..+++... -|.+-|..-..+|.+.|.++.|++-.+..+..+|....+|..|+.+|...|+++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 4445566667777777766666431 344555556666677777777777777776666666667777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003020 756 EATRIAKQMRESGLISDLLSYNNVLGLYAVDGRF 789 (856)
Q Consensus 756 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 789 (856)
+|++.|+++++.+|. +.....+|-.+--+.+..
T Consensus 167 ~A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 167 EAIEAYKKALELDPD-NESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHHHhhhccCCC-cHHHHHHHHHHHHHhcCC
Confidence 777777777766655 444445554444444433
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=5.9e-05 Score=77.67 Aligned_cols=186 Identities=15% Similarity=0.055 Sum_probs=135.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 632 PDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMI 711 (856)
Q Consensus 632 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 711 (856)
|+...+...+.+......-..+..++.+..+ +-.........-.+...|.+++|+..++.++... +.++..+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4555555555554433333333333333222 1122223333334557899999999999988743 35567777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 712 DLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKD 791 (856)
Q Consensus 712 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 791 (856)
+.+...++.++|.+.++++....|.....+..++.+|.+.|++.+|++++++.....|. |+..|..|+.+|..+|+..+
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 348 DILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHH
Confidence 89999999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcC
Q 003020 792 VIGTFKDMVNAAIQPDDF-TFKSLGAVLMKCG 822 (856)
Q Consensus 792 A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~G 822 (856)
|...+.++....-.++.. .+-....-..+.|
T Consensus 427 a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~ 458 (484)
T COG4783 427 ALLARAEGYALAGRLEQAIIFLMRASQQVKLG 458 (484)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhccCC
Confidence 999998887743233332 2333333344444
No 140
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=4.2e-05 Score=76.56 Aligned_cols=90 Identities=12% Similarity=-0.041 Sum_probs=56.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 679 YTKVGYLKEAQETYKLLRSLE---ASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFE 755 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 755 (856)
..+.|.+..|.+.|.+.+... ..|+...|.....+..+.|+.++|+.-.+++...++.-...+..-+.++...++|+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777666532 22344455555556666777777777777777665555555555566666667777
Q ss_pred HHHHHHHHHHHcC
Q 003020 756 EATRIAKQMRESG 768 (856)
Q Consensus 756 ~A~~~~~~~~~~~ 768 (856)
+|.+-++++.+..
T Consensus 339 ~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 339 EAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHhhc
Confidence 7777777776654
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.35 E-value=1.4e-05 Score=83.50 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR 750 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 750 (856)
....++..+...++++.|+++|+++.+.. |+.. ..++..+...++-.+|++++++.++..|.+...+..-+..|..
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 34455566666777788888887777643 4433 3466667677777788888888887777777777777777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 751 NGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 751 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 800 (856)
.++++.|+++.+++.+..|. +..+|..|+.+|.+.|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888887776 77788888888888888888877776553
No 142
>PF12854 PPR_1: PPR repeat
Probab=98.32 E-value=7.1e-07 Score=56.76 Aligned_cols=31 Identities=39% Similarity=0.504 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 003020 387 CPPDTRTYNILIFLHAKNDKISMASRYFWKM 417 (856)
Q Consensus 387 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (856)
+.||..+||+||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 143
>PF12854 PPR_1: PPR repeat
Probab=98.29 E-value=9.4e-07 Score=56.21 Aligned_cols=32 Identities=41% Similarity=0.494 Sum_probs=14.2
Q ss_pred CCCcChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003020 224 GIVPINSTYGTLIDVCSKGGLKEEAVCWLERM 255 (856)
Q Consensus 224 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (856)
|+.||..||++++.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 144
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=1.6e-05 Score=76.73 Aligned_cols=131 Identities=17% Similarity=0.122 Sum_probs=102.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 003020 641 INAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSM 719 (856)
Q Consensus 641 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 719 (856)
..-+.+.+++++|+..|.+.++.. |.|.+-|..-..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 455677889999999999999875 677888888899999999999999998888874 354 5589999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHH
Q 003020 720 VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFE---EATRIAKQMRESGLISDLL 774 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~ 774 (856)
+++|++.|++.++..|.|...+..|-.+-.+.+... .+..-++-....|..|+..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 999999999999999999877777776666665554 4444455455555445543
No 145
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=0.00024 Score=71.39 Aligned_cols=174 Identities=14% Similarity=0.046 Sum_probs=114.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-------------HHHHH
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYT-------------SNCMI 711 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-------------~~~l~ 711 (856)
.-.|++++|.+.--.+++.+ +.+......-..++--.++.+.|...|++.+..+ |+... +..-+
T Consensus 180 ~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhh
Confidence 34555566655555554443 2233332222333334455556666665555432 33221 11112
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003020 712 DLYSERSMVRQAEEIFEIMKKKGDA----NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDG 787 (856)
Q Consensus 712 ~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 787 (856)
.-..+.|++..|.+.|.+.+...|. +...|...+.+..+.|+.++|+.--+.++++++. -...|..-+.++...+
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le 335 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALE 335 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHH
Confidence 3345789999999999999998864 4556888888999999999999999999998654 4466777788899999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC
Q 003020 788 RFKDVIGTFKDMVNAAIQPD-DFTFKSLGAVLMKCG 822 (856)
Q Consensus 788 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~G 822 (856)
+|++|++-|++..+..-.+. ..++.....+|.++-
T Consensus 336 ~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSK 371 (486)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence 99999999999988543333 345666666666544
No 146
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.24 E-value=2.6e-05 Score=82.10 Aligned_cols=97 Identities=13% Similarity=0.009 Sum_probs=70.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003020 711 IDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFK 790 (856)
Q Consensus 711 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 790 (856)
+..+...|++++|++.|+++++..|.+...|..++.+|...|++++|+..++++++..|. ++..|..++.+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 344556677777777777777777777777777777777777777777777777777765 6677777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHH
Q 003020 791 DVIGTFKDMVNAAIQPDDFT 810 (856)
Q Consensus 791 ~A~~~~~~~~~~g~~p~~~~ 810 (856)
+|+..|+++++ +.|+...
T Consensus 88 eA~~~~~~al~--l~P~~~~ 105 (356)
T PLN03088 88 TAKAALEKGAS--LAPGDSR 105 (356)
T ss_pred HHHHHHHHHHH--hCCCCHH
Confidence 77777777776 3555444
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.22 E-value=6.4e-05 Score=68.10 Aligned_cols=126 Identities=12% Similarity=0.182 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEASP--DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMML 745 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~ 745 (856)
.|..++..+ ..++...+...++.+.+..... .....-.+...+...|++++|...|+.+....+.+ ..+...|+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 3667777777777776632211 12233345566777788888888888877765332 23555677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 746 IMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 746 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
.++...|++++|+..++..... ...+..+...+.+|.+.|++++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788888888888887663221 224456677788888888888888888764
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.20 E-value=2.5e-05 Score=64.91 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=75.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003020 707 SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVD 786 (856)
Q Consensus 707 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 786 (856)
+..++..+...|++++|...++++.+..|.+..++..++.++...|++++|.+.++++.+..+. +..++..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 4456667777888888888888888777777777888888888888888888888888887766 557788888888888
Q ss_pred CCHHHHHHHHHHHHH
Q 003020 787 GRFKDVIGTFKDMVN 801 (856)
Q Consensus 787 g~~~~A~~~~~~~~~ 801 (856)
|++++|...+++.++
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 888888888887765
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.13 E-value=8.8e-05 Score=64.72 Aligned_cols=96 Identities=11% Similarity=-0.019 Sum_probs=63.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 003020 707 SNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS--DLLSYNNVLG 781 (856)
Q Consensus 707 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~ 781 (856)
+..++..+.+.|++++|.+.++.+.+..|.+ ..++..++.++...|++++|.+.++++....|.. .+.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3455556666777777777777776655443 3456667777777777777777777777665442 2456667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 003020 782 LYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 782 ~~~~~g~~~~A~~~~~~~~~~ 802 (856)
++.+.|++++|...++++++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 777777777777777777664
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.13 E-value=5.1e-06 Score=67.05 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003020 717 RSMVRQAEEIFEIMKKKGDA--NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIG 794 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 794 (856)
.|+++.|+.+++++.+..|. +...+..++.+|.+.|++++|+.++++ .+.++. ++.....++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 57888899999888887764 455666788899999999999999888 555444 45666677888999999999998
Q ss_pred HHHHH
Q 003020 795 TFKDM 799 (856)
Q Consensus 795 ~~~~~ 799 (856)
++++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 88763
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.11 E-value=0.00017 Score=65.23 Aligned_cols=126 Identities=13% Similarity=0.208 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHH
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESAGLPPN---AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDV--YTSNCM 710 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l 710 (856)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......|.. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 334444444 4677788888888887753 333 233344557777888888888888888875532321 234456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003020 711 IDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQM 764 (856)
Q Consensus 711 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 764 (856)
..++...|++++|+..++... ..+..+..+..++.+|...|++++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777888888888888886643 23455667778888888899999998888875
No 152
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.00013 Score=71.11 Aligned_cols=100 Identities=7% Similarity=-0.018 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003020 702 PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG---RFEEATRIAKQMRESGLISDLLSYNN 778 (856)
Q Consensus 702 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~ 778 (856)
.|...|-.|...|...|+++.|...|.++.+..|+|+..+..++.++..+. ...++..++++++..++. |+.+...
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 577888888889999999999999999988888888888888888876554 467888889999988887 8888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 779 VLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 779 l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
|+..++.+|++.+|...|+.|++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 888899999999999999998885
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.03 E-value=0.0002 Score=62.49 Aligned_cols=105 Identities=13% Similarity=0.048 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEAS-P-DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMM 744 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 744 (856)
.++..++..+...|++++|.+.|+.+.+.... + ....+..++.++...|++++|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34566677777888888888888877763321 1 13455567778888888888888888887765443 5567788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 745 LIMYKRNGRFEEATRIAKQMRESGLISDLLS 775 (856)
Q Consensus 745 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 775 (856)
+.++...|++++|.+.++++++..|. +..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG-SSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC-ChhH
Confidence 88888888888888888888888765 4433
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.00 E-value=0.00019 Score=75.71 Aligned_cols=105 Identities=8% Similarity=-0.147 Sum_probs=84.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 676 IKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFE 755 (856)
Q Consensus 676 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 755 (856)
+..+...|++++|++.|+++++... .+...|..+..+|...|++++|+..+++++...|.+...|..++.+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 4556678888899988888887543 356677788888888899999999999998888888888989999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003020 756 EATRIAKQMRESGLISDLLSYNNVLGL 782 (856)
Q Consensus 756 ~A~~~~~~~~~~~~~p~~~~~~~l~~~ 782 (856)
+|+..|+++++.+|. ++.....+..+
T Consensus 88 eA~~~~~~al~l~P~-~~~~~~~l~~~ 113 (356)
T PLN03088 88 TAKAALEKGASLAPG-DSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 999999999988877 66665555444
No 155
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.97 E-value=0.00022 Score=63.05 Aligned_cols=98 Identities=9% Similarity=-0.109 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYK 749 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 749 (856)
...-.+...+...|++++|..+|+.+....+ -+..-|..|.-++...|++++|+..|..+....|.|+..+..++.++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4455666677789999999999998887442 345566788888889999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q 003020 750 RNGRFEEATRIAKQMRESG 768 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~~~ 768 (856)
..|+.+.|.+.|+.++...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999888763
No 156
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.96 E-value=3.1e-05 Score=59.69 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDG-RFKDVIGTFKDMVN 801 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 801 (856)
++.+|..++..+...|++++|+..|+++++.+|. ++..|..++.+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567777778888888888888888888887776 7777888888888887 67888888877766
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.95 E-value=0.00035 Score=65.47 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD--VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
.+..++..+...|++++|...|++..+....+. ...+..++.++...|++++|...++++.+..|.+...+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444555555555555555555544221111 233444444445555555555555555544444444444444444
Q ss_pred HHcCC
Q 003020 749 KRNGR 753 (856)
Q Consensus 749 ~~~g~ 753 (856)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.95 E-value=0.00015 Score=59.99 Aligned_cols=97 Identities=23% Similarity=0.225 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 003020 672 YNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN 751 (856)
Q Consensus 672 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 751 (856)
+..++..+...|++++|...++.+.+... .+...+..+..++...+++++|.+.++......|.+..++..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45566677777888888888887776432 23355666777777888888888888888877777777888888888888
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 003020 752 GRFEEATRIAKQMRESGL 769 (856)
Q Consensus 752 g~~~~A~~~~~~~~~~~~ 769 (856)
|++++|...++++.+..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 888888888888776543
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.95 E-value=0.00017 Score=67.27 Aligned_cols=97 Identities=11% Similarity=-0.025 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA---NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVL 780 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 780 (856)
...|..++..+...|++++|+..++++....+. .+.++..++.++...|++++|+..++++++..+. ...++..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 344556666677777788888877777665432 2346777888888888888888888888877655 456666666
Q ss_pred HHHH-------hcCCHHHHHHHHHHHHH
Q 003020 781 GLYA-------VDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 781 ~~~~-------~~g~~~~A~~~~~~~~~ 801 (856)
.++. ..|++++|+..+++.+.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 6666 77777766666555433
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.94 E-value=0.00036 Score=65.40 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESAGLPPN--AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDL 713 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 713 (856)
.+..+...+...|++++|...|++..+....+. ...+..++.++.+.|++++|+..++++.+... .+...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 445555555556666666666666554321111 24555555566666666666666665555321 123344444555
Q ss_pred HHHcCCHHHHHH
Q 003020 714 YSERSMVRQAEE 725 (856)
Q Consensus 714 ~~~~g~~~~A~~ 725 (856)
+...|+...+..
T Consensus 116 ~~~~g~~~~a~~ 127 (172)
T PRK02603 116 YHKRGEKAEEAG 127 (172)
T ss_pred HHHcCChHhHhh
Confidence 555555444443
No 161
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.94 E-value=0.00033 Score=70.12 Aligned_cols=155 Identities=18% Similarity=0.128 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH----HHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHH
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAM----ESAGL-PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS----LEAS-PDVY 705 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~ 705 (856)
.|..+...|.-.|+++.|+..-+.- .+.|- ......+..+.+++.-.|.++.|.+.|+.... .|-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555555666677666554322 12221 11234566777777777777777777765432 2211 1223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CCHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKG------DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI-----SDLL 774 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~ 774 (856)
+...|...|.-..++++|+.++.+-+... .....++.+|+.++...|..++|+.+.++-++...+ -...
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 44466677777777777777776543221 334557777888888888888887777666543211 1123
Q ss_pred HHHHHHHHHHhcCCHH
Q 003020 775 SYNNVLGLYAVDGRFK 790 (856)
Q Consensus 775 ~~~~l~~~~~~~g~~~ 790 (856)
.-.++...-...|..+
T Consensus 357 ar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 357 ARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhHHHHHHhCCCc
Confidence 3445555555555543
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.93 E-value=4.4e-05 Score=57.96 Aligned_cols=57 Identities=11% Similarity=0.202 Sum_probs=36.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 744 MLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 744 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
++..+...|++++|++.|+++++..|. ++..+..++.++...|++++|+.+|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666666666666655 666666666666666666666666666665
No 163
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.91 E-value=0.0002 Score=74.88 Aligned_cols=116 Identities=12% Similarity=0.017 Sum_probs=67.4
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHH
Q 003020 438 IRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERA 517 (856)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 517 (856)
..++++.|+.+|+++.+.. |+ ....++..+...++..+|.+++.+.....|.+.+....-+..+.+.++++.|+.+
T Consensus 181 ~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred hcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3444444444444444332 12 2222344444444444555555555544455555555556666666777777777
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 003020 518 FICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTS 557 (856)
Q Consensus 518 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 557 (856)
.+++....|.+..+|..|..+|...|+++.|+..++.+.-
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7777777677777777777777777777777777776653
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.90 E-value=0.00024 Score=66.36 Aligned_cols=95 Identities=18% Similarity=0.070 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASP--DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLI 746 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 746 (856)
...|..++..+...|++++|+..|++.......+ ...++..+..++...|++++|+..++++....|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4556666777777788888888887776643222 23467777778888888888888888888777777777777777
Q ss_pred HHH-------HcCCHHHHHHHHHH
Q 003020 747 MYK-------RNGRFEEATRIAKQ 763 (856)
Q Consensus 747 ~~~-------~~g~~~~A~~~~~~ 763 (856)
++. ..|++++|+..+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 776 66676644444443
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.89 E-value=5.8e-05 Score=57.31 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=54.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
++..+...|++++|++.|+.+++..|.++.++..++.++...|++++|+..|+++++..|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4567889999999999999999999999999999999999999999999999999988765
No 166
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.0015 Score=61.72 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=80.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHHcC
Q 003020 679 YTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG------DANEFTYAMMLIMYKRNG 752 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g 752 (856)
+...|.+.-....+.++++...+.++.....|++.-.+.|+.+.|...|++..+.. ..+..+.......|.-++
T Consensus 187 llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n 266 (366)
T KOG2796|consen 187 LLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN 266 (366)
T ss_pred HhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheeccc
Confidence 33334444444444444443333334444444444444444444444444332211 122223333444555566
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCHHHHHhhcc
Q 003020 753 RFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVL-MKCGLELTRKKNA 831 (856)
Q Consensus 753 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~G~~~~~~~~~ 831 (856)
++..|...+.++.+.++. ++..-|+-+-++.-.|+..+|++..+.|++ ..|...+-++++--+ .-..+++.+.+..
T Consensus 267 n~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~~nL~tmyEL~Ys~~~~~ 343 (366)
T KOG2796|consen 267 NFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVLFNLTTMYELEYSRSMQK 343 (366)
T ss_pred chHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHHHHHHHHHHHHhhhhhhH
Confidence 666777777777666665 666666666666666777777777777766 356655544433333 2333555555555
Q ss_pred hhhHHHHH
Q 003020 832 QSGLQAWM 839 (856)
Q Consensus 832 ~~~~~~~~ 839 (856)
...+..|.
T Consensus 344 k~~l~~~i 351 (366)
T KOG2796|consen 344 KQALLEAV 351 (366)
T ss_pred HHHHHHHH
Confidence 55555553
No 167
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.85 E-value=0.0034 Score=56.10 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCHHHHHH
Q 003020 666 PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD--ANEFTYAM 743 (856)
Q Consensus 666 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~ 743 (856)
.|+...-..|..+....|++.||...|++...--+..|....-.+.++....++...|...++++.+-.| .++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 5777777788888999999999999999888755667777777888888889999999999998887663 23344556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 744 MLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 744 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+++.+...|++.+|+..|+.++..-|.|...+|+ +..+.++|+.++|..-+....+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y--~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYY--AEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH--HHHHHHhcchhHHHHHHHHHHH
Confidence 7888899999999999999999887655555544 5567888888877665555544
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.85 E-value=0.0012 Score=72.74 Aligned_cols=101 Identities=12% Similarity=0.197 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 721 RQAEEIFEIMKKK--GDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 721 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
+.+.+..++.... .+.++.++..++..+...|++++|...++++++.++ +...|..++.++...|+.++|.+.+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444555554443 466677888888777788999999999999988874 677888889999999999999999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCHHH
Q 003020 799 MVNAAIQPDDFTFKSLGAVLMKCGLEL 825 (856)
Q Consensus 799 ~~~~g~~p~~~~~~~l~~~~~~~G~~~ 825 (856)
+.. +.|...||...-+.-..+.++.
T Consensus 479 A~~--L~P~~pt~~~~~~~~f~~~~~~ 503 (517)
T PRK10153 479 AFN--LRPGENTLYWIENLVFQTSVET 503 (517)
T ss_pred HHh--cCCCCchHHHHHhccccccHHH
Confidence 887 4677666654444444444333
No 169
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.85 E-value=6.7e-05 Score=57.83 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q 003020 703 DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG-RFEEATRIAKQMRESGL 769 (856)
Q Consensus 703 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 769 (856)
+...|..++..+...|++++|+..|+++++..|.++.+|..++.+|...| ++++|++.++++++..|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678888999999999999999999999999999999999999999999 79999999999998764
No 170
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.82 E-value=3.1e-05 Score=50.15 Aligned_cols=34 Identities=56% Similarity=0.812 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003020 323 TYNTLIDTYGKAGQLKEASETFAQMLREGIVPTT 356 (856)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 356 (856)
+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7899999999999999999999999999988873
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.79 E-value=4.9e-05 Score=61.27 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003020 682 VGYLKEAQETYKLLRSLEAS-PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRI 760 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 760 (856)
.|++++|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.++.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777663321 2334444567777777777777777766 333344555555667777777777777777
Q ss_pred HHH
Q 003020 761 AKQ 763 (856)
Q Consensus 761 ~~~ 763 (856)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 172
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.77 E-value=0.00011 Score=56.47 Aligned_cols=63 Identities=13% Similarity=0.291 Sum_probs=38.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 749 KRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSL 814 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 814 (856)
...|++++|++.++++.+..|. +...+..++.+|.+.|++++|.+++++++.. .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 3456666666666666666665 6666666666666666666666666666663 5554444433
No 173
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.76 E-value=0.06 Score=54.27 Aligned_cols=253 Identities=15% Similarity=0.126 Sum_probs=165.0
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH
Q 003020 540 GMGRNYDKACNLFDSMTSHGAVPDKC--SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEM 617 (856)
Q Consensus 540 ~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 617 (856)
.-.|+++.|.+-|+.|... |... -...|.-.-.+.|..+.|.++-+..-+.- +.-...+...+...+..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 4568888888888888763 2211 23333334456788888888777766543 2223456777888888899999
Q ss_pred HHHHHHHHHHCC-CCCCHH--HHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 003020 618 AEEVYKDMIRFN-VEPDVV--VYGVLINAFAD---VGNVKQAQSYFDAMESAGLPPNAV-IYNSLIKLYTKVGYLKEAQE 690 (856)
Q Consensus 618 A~~~~~~~~~~~-~~~~~~--~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~ 690 (856)
|+++.+.-.... +.++.. .-..|+.+-.. ..+...|...-.+..+. .|+-. .-..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 999888766432 334433 22233332221 23566666666665553 44432 23344577889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---HHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 691 TYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFE---IMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 691 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
+++.+-+....|+.. . +..+.+.|+ .++.-++ ++....|.|......+..+-...|++..|..-.+.+...
T Consensus 285 ilE~aWK~ePHP~ia--~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 285 ILETAWKAEPHPDIA--L--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHhcCCChHHH--H--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 999998865445432 1 223344554 3333333 344445888889999999999999999999988888876
Q ss_pred CCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCC
Q 003020 768 GLISDLLSYNNVLGLYAV-DGRFKDVIGTFKDMVNAAIQP 806 (856)
Q Consensus 768 ~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~p 806 (856)
. |-...|-.|.++-.. .|+-.++...+-+.++..-.|
T Consensus 359 ~--pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 359 A--PRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred C--chhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 5 455777777777654 499999999999988854444
No 174
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=0.097 Score=56.64 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=127.3
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCc--------ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 003020 190 HELNVIHYNIMLRTLGKARKWSYVQSLWDEMSV-KGIVP--------INSTYGTLIDVCSKGGLKEEAVCWLERMNEGGM 260 (856)
Q Consensus 190 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 260 (856)
..|.+..|..+.......-.++-|+..|-+.-. .|++. +...-..=+. .--|.+++|.++|-+|-++.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh-
Confidence 357788899888877776777888877755332 11110 0011111122 23478888888887776542
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHH
Q 003020 261 EPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEA 340 (856)
Q Consensus 261 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 340 (856)
..+..+.+.|++-+..++++.-.. ..+...-..+|+.+...+.....+++|
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~---------------------d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGS---------------------DDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCC---------------------CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235567777888887777754221 111122246888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 003020 341 SETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEA 420 (856)
Q Consensus 341 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 420 (856)
.+.|..-. +. ...+.++.+..++++...+.+.+ |.+....-.+..++.+.|.-++|.+.|-+--.
T Consensus 816 ~~yY~~~~------~~---e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~- 880 (1189)
T KOG2041|consen 816 AKYYSYCG------DT---ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL- 880 (1189)
T ss_pred HHHHHhcc------ch---HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC-
Confidence 88887642 11 23456666666666655555443 34555666777888888888888777644321
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 421 NLEPDIVSYRTLLYAYSIRRMVCEAEELISEM 452 (856)
Q Consensus 421 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 452 (856)
|. ..+..|...+++.+|.++-++.
T Consensus 881 ---pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 881 ---PK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ---cH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 22 2345566667777777765543
No 175
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.72 E-value=0.065 Score=57.93 Aligned_cols=205 Identities=14% Similarity=0.116 Sum_probs=117.4
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCC--------CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 003020 388 PPDTRTYNILIFLHAKNDKISMASRYFWKMKEA-NLEP--------DIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLE 458 (856)
Q Consensus 388 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~--------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 458 (856)
.|....|..+.......-.++-|...|-+...- |++. +...-.+=+.+ --|.+++|+++|-+|.+.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 577788888887777767777777777655431 2110 00111111222 24889999999888766543
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 003020 459 IDEYTQSALTRMYIEAGMLEKSWLWFRRFHLA--GDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMV 536 (856)
Q Consensus 459 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 536 (856)
.+.++.+.|++-...++++.-... +..-..+|..++..+.....+++|.+.|..... ....+
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ 829 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQI 829 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHH
Confidence 355666777776555554432111 112235777888888888888888887765442 12344
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHH
Q 003020 537 KAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLE 616 (856)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 616 (856)
.++.+...+++-..+-..+ +.+....-.+..++.+.|.-++|.+.+-+. +. | ...+..|...+++.
T Consensus 830 ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHH
Confidence 5555555555544444433 234455556667777777777776655332 11 1 22345566666677
Q ss_pred HHHHHHHHH
Q 003020 617 MAEEVYKDM 625 (856)
Q Consensus 617 ~A~~~~~~~ 625 (856)
+|.++-++.
T Consensus 896 ~avelaq~~ 904 (1189)
T KOG2041|consen 896 EAVELAQRF 904 (1189)
T ss_pred HHHHHHHhc
Confidence 776665544
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.72 E-value=0.003 Score=64.51 Aligned_cols=186 Identities=16% Similarity=0.203 Sum_probs=89.2
Q ss_pred ccHHHHhhHhhhhcChhHHHHHHHhcCCHHHHHHHHHHhHHc----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003020 146 KDLDEALKPWAENLSNKERSIILKEQSSWERALEIFEWFKRQ----ECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMS 221 (856)
Q Consensus 146 ~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 221 (856)
.++++|...|.+ .+..++..++|++|.+.|..+... +....-...|......|.+ .++++|+..+++..
T Consensus 29 ~~~e~Aa~~y~~------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 29 PDYEEAADLYEK------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHH------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHH
Confidence 477888888876 455678888888888888866432 2111112344444444433 36777777666654
Q ss_pred hCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhc-CChhHHHHHHHHHhhhccccCCc
Q 003020 222 VKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKA-GEFQKAEEFFKKWSSRESLRHGE 300 (856)
Q Consensus 222 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~ 300 (856)
. .|...|++..|-..+.++ ...|... |+++.|.+.|++....
T Consensus 102 ~---------------~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~------- 144 (282)
T PF14938_consen 102 E---------------IYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAEL------- 144 (282)
T ss_dssp H---------------HHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHH-------
T ss_pred H---------------HHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence 3 333444444443333332 2223333 4455555544443210
Q ss_pred chhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH-hHHHHHHHHhcCCCHHH
Q 003020 301 DTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIV-----PTTV-TFNTMIHIYGNNDQLAE 374 (856)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-----p~~~-~~~~ll~~~~~~g~~~~ 374 (856)
++... ....-...+..+...+.+.|++++|+++|++....-.. .+.. .|...+-++...|++..
T Consensus 145 --------y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~ 214 (282)
T PF14938_consen 145 --------YEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVA 214 (282)
T ss_dssp --------HHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHH
T ss_pred --------HHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHH
Confidence 00000 00011234455566666666777777776666553221 1111 22223334445566666
Q ss_pred HHHHHHHHHhC
Q 003020 375 VDSLIKKMEEL 385 (856)
Q Consensus 375 A~~~~~~~~~~ 385 (856)
|...+++....
T Consensus 215 A~~~~~~~~~~ 225 (282)
T PF14938_consen 215 ARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHGTT
T ss_pred HHHHHHHHHhh
Confidence 66666666543
No 177
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.0018 Score=63.41 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=93.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 003020 656 YFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE---RSMVRQAEEIFEIMKK 732 (856)
Q Consensus 656 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 732 (856)
-++.-+..+ |-|...|..|+.+|...|+++.|...|.+..+... ++...+..+..++.. ..+..++..++++++.
T Consensus 144 ~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 144 RLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 334444443 77889999999999999999999999999988432 445556666666543 3357889999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003020 733 KGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISD 772 (856)
Q Consensus 733 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 772 (856)
.+|.|+.+...|+..+..+|++.+|...|+.|++..|.-+
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999977633
No 178
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.66 E-value=8e-05 Score=47.77 Aligned_cols=33 Identities=36% Similarity=0.606 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003020 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGIVP 354 (856)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 354 (856)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888988998888888877
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.65 E-value=0.0034 Score=69.17 Aligned_cols=68 Identities=7% Similarity=-0.107 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 702 PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 702 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.+...|..+.-.....|++++|...++++....| +...|..++.++...|+.++|...++++...+|.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3456666666666677899999999999998876 6788889999999999999999999999888776
No 180
>PRK15331 chaperone protein SicA; Provisional
Probab=97.65 E-value=0.0011 Score=58.84 Aligned_cols=89 Identities=9% Similarity=-0.075 Sum_probs=79.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 712 DLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKD 791 (856)
Q Consensus 712 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 791 (856)
.-+...|++++|..+|+-+...++.|+.-|..|+.++-..+++++|+..|..+...++. |+..+...+.+|...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 34457899999999999998888899999999999999999999999999999888876 88888899999999999999
Q ss_pred HHHHHHHHHH
Q 003020 792 VIGTFKDMVN 801 (856)
Q Consensus 792 A~~~~~~~~~ 801 (856)
|...|+..++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999999887
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.64 E-value=0.00015 Score=55.62 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=52.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003020 715 SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNN 778 (856)
Q Consensus 715 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 778 (856)
...|++++|++.|+++....|.+..++..++.+|.+.|++++|.++++++....|. ++..+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~-~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD-NPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT-HHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-HHHHHHH
Confidence 46788999999999999988999999999999999999999999999999988765 4444433
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.61 E-value=0.015 Score=57.43 Aligned_cols=57 Identities=11% Similarity=-0.042 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 743 MMLIMYKRNGRFEEATRIAKQMRESGLIS--DLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 743 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
.++.-|.+.|++..|+.-++.+++.-|.. ...+...++.+|...|..++|.++...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45566777888888888888888775542 2356677778888888888887766554
No 183
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.61 E-value=0.0017 Score=64.65 Aligned_cols=102 Identities=14% Similarity=0.062 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS--DLLSYNNVL 780 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~ 780 (856)
.|...+..+.+.|++++|+..|+.+.+..|.+ +.++..++.+|...|++++|+..|+++++..|.. .+.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 44444444455677777777777777776655 3567777777777788888888887777665441 235566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 781 GLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 781 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
.++...|++++|..+|++.++. .|+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 7777778888888888777764 45443
No 184
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.60 E-value=8.1e-05 Score=48.11 Aligned_cols=33 Identities=39% Similarity=0.485 Sum_probs=16.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 003020 393 TYNILIFLHAKNDKISMASRYFWKMKEANLEPD 425 (856)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 425 (856)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344555555555555555555555555444444
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.56 E-value=0.0043 Score=53.03 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=21.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 714 YSERSMVRQAEEIFEIMKKKGDAN---EFTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 714 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
+-..|+.++|+.+|++....+... ...+..++..+...|++++|+.++++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444433111 12333344444444444444444444443
No 186
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.54 E-value=0.00048 Score=53.72 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=37.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 746 IMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFT 810 (856)
Q Consensus 746 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 810 (856)
..|.+.+++++|+++++++++.+|. ++..|...+.++...|++++|.+.+++.++. .|+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 3455666666666666666666655 5566666666666666666666666666653 444443
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.097 Score=49.90 Aligned_cols=228 Identities=10% Similarity=0.112 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----------CCCCH----HHHH-HHHH--HHHcCCChHHHHHHHHHH
Q 003020 529 VLVFNVMVKAYGMGRNYDKACNLFDSMTSHG-----------AVPDK----CSYN-SLIQ--ILAGADLPHMAKRYLRKM 590 (856)
Q Consensus 529 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~~----~~~~-~ll~--~~~~~~~~~~A~~~~~~~ 590 (856)
...|+.-+.++.+.+..++|..-+....+.+ +-|+. +.|. .++. +....|.+.+.+.-+..+
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 5667777778888888887776665554331 11211 1111 1111 222345555554444433
Q ss_pred HHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003020 591 QEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAV 670 (856)
Q Consensus 591 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 670 (856)
+.. ...++.-+......+..++.|++-. ....+.++..+.-.|.+.-.+.++++.++...+.++.
T Consensus 149 ~~~--------V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~ 213 (366)
T KOG2796|consen 149 KTV--------VSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQ 213 (366)
T ss_pred HHH--------HHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHH
Confidence 321 1222222333333355566665533 2244566777777888888999999999987777888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSN-----CMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMML 745 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 745 (856)
....+++.-.+.|+.+.|...|+...+..-..+..+.+ .....+.-++++..|...+.+++..++.++...+.-+
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKA 293 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKA 293 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHH
Confidence 99999999999999999999999776633233333333 3334566788999999999999999999999998888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003020 746 IMYKRNGRFEEATRIAKQMRESGLIS 771 (856)
Q Consensus 746 ~~~~~~g~~~~A~~~~~~~~~~~~~p 771 (856)
-+..-.|+..+|++..+.+.+..|.|
T Consensus 294 LcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 294 LCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 88888999999999999999987765
No 188
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.49 E-value=0.00017 Score=46.19 Aligned_cols=32 Identities=38% Similarity=0.461 Sum_probs=16.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 003020 393 TYNILIFLHAKNDKISMASRYFWKMKEANLEP 424 (856)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 424 (856)
+|+.++.++++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555544443
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.48 E-value=0.015 Score=59.44 Aligned_cols=95 Identities=15% Similarity=0.179 Sum_probs=43.8
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhCC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CH-
Q 003020 707 SNCMIDLYSER-SMVRQAEEIFEIMKKKG--DAN----EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-----DL- 773 (856)
Q Consensus 707 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~- 773 (856)
+..+...|... |++++|++.|+++.+.. ... ...+..++..+.+.|++++|+++|+++....... +.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33444445444 55666666665554432 111 1234455555666666666666666655432221 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 774 LSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 774 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
..+...+-++...|++..|...+++...
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1222333455555666666666666544
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.46 E-value=0.003 Score=63.50 Aligned_cols=284 Identities=15% Similarity=0.065 Sum_probs=156.4
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHh--c--CCC-CCCHhhHHHHHH
Q 003020 399 FLHAKNDKISMASRYFWKMKEANLEPDI----VSYRTLLYAYSIRRMVCEAEELISEMD--G--GGL-EIDEYTQSALTR 469 (856)
Q Consensus 399 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~--~--~~~-~p~~~~~~~l~~ 469 (856)
.-+++.|+......+|+..++.|- .|. ..|..|..+|.-.+++++|++....=+ . .|- .-...+-..+.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 345666666666666666666552 232 345555666666667777766543211 0 010 011223334555
Q ss_pred HHHHcCChHHHHHHHHHHH----hcC--CCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccC
Q 003020 470 MYIEAGMLEKSWLWFRRFH----LAG--DMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGR 543 (856)
Q Consensus 470 ~~~~~g~~~~a~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 543 (856)
.+--.|.+++|.....+-+ +.+ -....++.+++..|...|+.-.- ..|.+...++.=+. .
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~---------~~pee~g~f~~ev~-----~ 169 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL---------EAPEEKGAFNAEVT-----S 169 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC---------CChhhcccccHHHH-----H
Confidence 5555666776655443322 111 12334556666666665543110 00101111111100 0
Q ss_pred CHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHH----HcCCC-CChHhHHHHHHHHHhcC
Q 003020 544 NYDKACNLFDSMTS----HGA-VPDKCSYNSLIQILAGADLPHMAKRYLRKMQ----EAGLV-SDCIPYCAVISSYMKLG 613 (856)
Q Consensus 544 ~~~~A~~~~~~m~~----~~~-~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g 613 (856)
.++.|.+.|.+=++ .|- -.....|..|.+.|.-.|+++.|+..++.-+ +.|-. .....+..+.+++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 12334444433211 110 0122356677777778899999988776533 22311 12335778888899999
Q ss_pred CHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcC
Q 003020 614 QLEMAEEVYKDMIR----FNV-EPDVVVYGVLINAFADVGNVKQAQSYFDAMESA-----GLPPNAVIYNSLIKLYTKVG 683 (856)
Q Consensus 614 ~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g 683 (856)
+++.|.+.|+.... .|- .....+.-++...|.-...+++|+.++.+-+.. +..-....+.+|..++...|
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 99999999887653 221 223446667888888888899999888765431 11234567888999999999
Q ss_pred CHHHHHHHHHHHHh
Q 003020 684 YLKEAQETYKLLRS 697 (856)
Q Consensus 684 ~~~~A~~~~~~~~~ 697 (856)
..++|+.+.+..++
T Consensus 330 ~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 330 EHRKALYFAELHLR 343 (639)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999887765544
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.45 E-value=0.043 Score=54.29 Aligned_cols=80 Identities=8% Similarity=-0.054 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhh---HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 003020 193 NVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINST---YGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGI 269 (856)
Q Consensus 193 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 269 (856)
++..+-.....+...|++++|+..|+++....+.+ ..+ ...++.++.+.+++++|+..|++.++..+.....-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 34333345556667899999999999988865442 222 35667788899999999999999988754433333333
Q ss_pred HHHH
Q 003020 270 VVQM 273 (856)
Q Consensus 270 ll~~ 273 (856)
...+
T Consensus 110 Y~~g 113 (243)
T PRK10866 110 YMRG 113 (243)
T ss_pred HHHH
Confidence 3333
No 192
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.41 E-value=0.21 Score=51.52 Aligned_cols=133 Identities=14% Similarity=0.192 Sum_probs=86.0
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 003020 599 CIPYCAVISSYMKLGQLEMAEEVYKDMIRFN-VEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVI-YNSLI 676 (856)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~ 676 (856)
..+|...++.-.+..-.+.|..+|-++.+.+ +.+++.++++++..++ .|++.-|..+|+--... -||... -.-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456666666666667778888888887776 5667777777777654 46777777777766554 234333 34455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASPD--VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD 735 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 735 (856)
..+...++-+.|..+|+...+. +..+ ...|..+++--..-|+...+..+-+++.+..|
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 5666777777777777754431 1112 34677777766677777777777777766554
No 193
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.39 E-value=0.0011 Score=51.61 Aligned_cols=60 Identities=17% Similarity=0.095 Sum_probs=54.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 711 IDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 711 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
...|.+.+++++|.+.++.+....|.++..|...+.++...|++++|.+.++++++.+|.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 356788999999999999999999999999999999999999999999999999998876
No 194
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.39 E-value=0.0039 Score=63.36 Aligned_cols=130 Identities=6% Similarity=-0.080 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCCchhhHHHHHHHh
Q 003020 428 SYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIE-AGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYG 506 (856)
Q Consensus 428 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 506 (856)
+|..++...-+.+..+.|..+|.+.++.+ ..+...|...+.+-.. .++.+.|..+|+...+..+.+.+.|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 46666666666666777777777776432 2234455555555444 344455777777777777777777777777777
Q ss_pred hcCCHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 003020 507 ERGHVLEAERAFICCQEGKKLT---VLVFNVMVKAYGMGRNYDKACNLFDSMTSH 558 (856)
Q Consensus 507 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 558 (856)
..++.+.|..+|+++....+.+ ..+|...++.-.+.|+.+.+.++.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777664433 357888888777888888888877777764
No 195
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.38 E-value=0.23 Score=51.23 Aligned_cols=135 Identities=17% Similarity=0.190 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHH
Q 003020 633 DVVVYGVLINAFADVGNVKQAQSYFDAMESAG-LPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTS-NCM 710 (856)
Q Consensus 633 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l 710 (856)
=..+|...+..-.+..-.+.|..+|-+..+.+ +.+++..+++++..++ .|+..-|.++|+.-...- ||...| ...
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHH
Confidence 34577778888778888899999999999888 5678888888888765 678888999998665532 443333 345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 711 IDLYSERSMVRQAEEIFEIMKKKGDAN--EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 711 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
+.-+...++-..|..+|+....+-..+ ..+|..++.--..-|+...+..+-+++.+.-|.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 566778899999999999766554333 567888888888889999998888888887554
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.36 E-value=0.21 Score=50.56 Aligned_cols=286 Identities=14% Similarity=0.075 Sum_probs=144.3
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHH--HHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHH
Q 003020 438 IRRMVCEAEELISEMDGGGLEIDEYTQSALTRM--YIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAE 515 (856)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 515 (856)
..|+-..|.++-.+..+. +..|...+..++.+ -.-.|+++.|.+-|+.|......-.-....+.-.-.+.|..+.|+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 356666676666554321 23344444444433 233566666666666665332222222222222233445555555
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 003020 516 RAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGL 595 (856)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 595 (856)
..-+...+.-+.-.-.+...+...+..|+|+.|+++.+.-....+ +
T Consensus 175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v----------------------------------i 220 (531)
T COG3898 175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV----------------------------------I 220 (531)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh----------------------------------h
Confidence 555444444444445555555555555555555555554333211 1
Q ss_pred CCChHh--HHHHHHH--HH-hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003020 596 VSDCIP--YCAVISS--YM-KLGQLEMAEEVYKDMIRFNVEPDVV-VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA 669 (856)
Q Consensus 596 ~~~~~~--~~~l~~~--~~-~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 669 (856)
.++..- -..|+.+ .. -.-+...|...-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+-+....|+
T Consensus 221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~- 297 (531)
T COG3898 221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD- 297 (531)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-
Confidence 111111 0111111 01 11245555555555554 345544 223344667788888888888888877643333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRS-LEASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM 747 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 747 (856)
.+.. ..+.+.|+ .++.-+++..+ ...+|+ ......+..+-...|++..|..--+.+... .|....|..|.+.
T Consensus 298 -ia~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~-~pres~~lLlAdI 371 (531)
T COG3898 298 -IALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE-APRESAYLLLADI 371 (531)
T ss_pred -HHHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-CchhhHHHHHHHH
Confidence 3222 12234443 34444443333 123343 445556666777778887777766666544 3445566666666
Q ss_pred HHHc-CCHHHHHHHHHHHHHc
Q 003020 748 YKRN-GRFEEATRIAKQMRES 767 (856)
Q Consensus 748 ~~~~-g~~~~A~~~~~~~~~~ 767 (856)
-... |+-.++...+-+.++.
T Consensus 372 eeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 372 EEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhhccCchHHHHHHHHHHhcC
Confidence 5444 8888888888888765
No 197
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.36 E-value=0.0032 Score=66.31 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003020 562 PDKCSYNSLIQILAGADLPHMAKRYLRKMQEAG--LVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGV 639 (856)
Q Consensus 562 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.+...+..+++.+....+.+.+..++.+..... ...-..|..++++.|.+.|..+.++.+++.=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 344444455555555555555555555544431 111122333555555555555555555555555555555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 640 LINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLY 679 (856)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 679 (856)
+++.+.+.|++..|.++...|...+...+..|+...+.+|
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 5555555555555555555554444444444444444333
No 198
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.35 E-value=0.00025 Score=44.27 Aligned_cols=31 Identities=52% Similarity=0.775 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003020 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGI 352 (856)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 352 (856)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887663
No 199
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0043 Score=63.12 Aligned_cols=96 Identities=8% Similarity=-0.029 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYA 784 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 784 (856)
.++..+.-+|.+.+++.+|++..++.+..+|+|+..+..-+.+|...|+++.|+..|+++++..|. |-.+-..++.+--
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 456778888999999999999999999999999999999999999999999999999999999887 7677777776666
Q ss_pred hcCCHHH-HHHHHHHHHH
Q 003020 785 VDGRFKD-VIGTFKDMVN 801 (856)
Q Consensus 785 ~~g~~~~-A~~~~~~~~~ 801 (856)
+..++.+ ..++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 5555544 4778888876
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.34 E-value=0.072 Score=47.94 Aligned_cols=133 Identities=20% Similarity=0.178 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHH
Q 003020 631 EPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLE---ASPDVYTS 707 (856)
Q Consensus 631 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~ 707 (856)
.|++..--.+..++...|++.+|...|++...--+..|....-.+.++....+++.+|...++.+-+.+ -+||..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~-- 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH-- 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch--
Confidence 456666666777777777888888777777664455667777777777777777777777777766632 234433
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 708 NCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 708 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
-.+.+.+...|++++|+..|+.+.... |++..-......+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y-pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY-PGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC-CCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 345677777788888888887777653 3344444445566677776666555544433
No 201
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.34 E-value=0.0047 Score=64.42 Aligned_cols=65 Identities=9% Similarity=-0.064 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 703 DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEF---TYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 703 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
+...++.+..+|...|++++|+..|+++++..|.+.. +|++++.+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3556667777777777777777777777777666653 4777777777777777777777777765
No 202
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.33 E-value=0.2 Score=49.57 Aligned_cols=222 Identities=16% Similarity=0.107 Sum_probs=149.1
Q ss_pred ChHHHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 579 LPHMAKRYLRKMQEAGLV-SDCIPYCAVISSYMKLGQLEMAEEVYKDMIRF-NVEPDVVVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 579 ~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444443221 12455666666777777788877777777642 2234555666667777777778888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003020 657 FDAMESAGLPPNAVIYNSLIK-LYTKVGYLKEAQETYKLLRSLEA--SPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKK 733 (856)
Q Consensus 657 ~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 733 (856)
+.........+ ......... .+...|+++.|...|++...... ......+......+...++++.|...+.++...
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 88877653222 222222233 67788888888888888755221 122334444444566788889999999888888
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 734 GDA-NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 734 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
.+. ....+..+...+...++++.|...+.......+. ....+..+...+...|.++++...+++....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777 6788888888888888999999999998887654 4566666666666777788998888888774
No 203
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.33 E-value=0.0016 Score=68.51 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=71.7
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003020 319 LSSYTYNTLIDTYGKAGQLKEASETFAQMLRE--GIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNI 396 (856)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 396 (856)
.++.....+++.+....+.+++..++-+.... ....-..|..++++.|...|..+.+..++..=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34555566666666666666666666666543 1111223455666777777777777777666666666677777777
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 003020 397 LIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYS 437 (856)
Q Consensus 397 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 437 (856)
||+.+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 77777777777777776666655444445455544444443
No 204
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.32 E-value=0.0031 Score=64.09 Aligned_cols=130 Identities=12% Similarity=-0.007 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhh-cCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 003020 462 YTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGE-RGHVLEAERAFICCQEGKKLTVLVFNVMVKAYG 540 (856)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 540 (856)
.+|..+++...+.+..+.|+.+|.++..........|...+.+... .++.+.|..+|+...+..+.+...|...++.+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3567777888888888889999998887777778888888888555 455555888888888888888888888888888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 003020 541 MGRNYDKACNLFDSMTSHGAVPDK---CSYNSLIQILAGADLPHMAKRYLRKMQE 592 (856)
Q Consensus 541 ~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 592 (856)
..++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++..++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888765 32222 2455555555555555555555555544
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.32 E-value=0.054 Score=57.97 Aligned_cols=101 Identities=13% Similarity=0.144 Sum_probs=73.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 003020 425 DIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDG 504 (856)
Q Consensus 425 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 504 (856)
+..+...+...+-+...+.-|-++|.+|-.. ..++++....+++++|..+-++.. ....++|...+..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP---e~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP---EFKDDVYMPYAQW 813 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc---cccccccchHHHH
Confidence 4445555555566677788888888887532 346778888899999987776654 4556677778888
Q ss_pred HhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 003020 505 YGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSH 558 (856)
Q Consensus 505 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 558 (856)
+....++++|.+.|. +.|+-.+|.++++++...
T Consensus 814 LAE~DrFeEAqkAfh---------------------kAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFH---------------------KAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhhHHHHHHHHH---------------------HhcchHHHHHHHHHhhhh
Confidence 888888888877664 557788999999887654
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.22 E-value=0.0089 Score=54.20 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003020 740 TYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN-----AAIQPDDFTFK 812 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~ 812 (856)
+...++..+...|++++|++.+++++..+|- +...|..++.+|...|+..+|++.|+++.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4556777888899999999999999999987 889999999999999999999999988755 58899887643
No 207
>PRK11906 transcriptional regulator; Provisional
Probab=97.20 E-value=0.016 Score=60.76 Aligned_cols=101 Identities=9% Similarity=0.054 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 719 MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 719 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
+..+|.++.+++.+.++.|+.+...++.++...++++.|...|+++...+|. .+.+|...+..+.-.|+.++|.+.+++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556677777777777777777777777777777777777777777777766 667777777777777777777777777
Q ss_pred HHHcCCCCCH---HHHHHHHHHHHHcC
Q 003020 799 MVNAAIQPDD---FTFKSLGAVLMKCG 822 (856)
Q Consensus 799 ~~~~g~~p~~---~~~~~l~~~~~~~G 822 (856)
.++ +.|-. ......+..|+..+
T Consensus 398 alr--LsP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 398 SLQ--LEPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred Hhc--cCchhhHHHHHHHHHHHHcCCc
Confidence 666 24432 22334444566666
No 208
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.18 E-value=0.025 Score=48.47 Aligned_cols=90 Identities=19% Similarity=0.120 Sum_probs=45.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHH
Q 003020 606 ISSYMKLGQLEMAEEVYKDMIRFNVEPD--VVVYGVLINAFADVGNVKQAQSYFDAMESAGLPP---NAVIYNSLIKLYT 680 (856)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~ 680 (856)
..++-..|+.++|+.+|++.+..|+... ...+-.+...+...|++++|..++++..... |. +......+..++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHH
Confidence 3344555666666666666666554432 2244445555666666666666666655431 11 1122222333445
Q ss_pred hcCCHHHHHHHHHHHH
Q 003020 681 KVGYLKEAQETYKLLR 696 (856)
Q Consensus 681 ~~g~~~~A~~~~~~~~ 696 (856)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566666666554433
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.17 E-value=0.067 Score=57.32 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=57.8
Q ss_pred CchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003020 494 SSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQI 573 (856)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 573 (856)
..++.......+.+...+.-|.++|.++.. ...+++.....++|++|..+-++..+- .||. |..-.+-
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaqw 813 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQW 813 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccc--cccc--cchHHHH
Confidence 344444455555556666667777766543 235667777788888888887776653 3332 2233333
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 574 LAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIR 627 (856)
Q Consensus 574 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 627 (856)
++...++++|.+ +|.+.|+..+|.++++++..
T Consensus 814 LAE~DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 814 LAENDRFEEAQK----------------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhhHHHHHH----------------------HHHHhcchHHHHHHHHHhhh
Confidence 444445444443 34556666677777666643
No 210
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.15 E-value=0.0052 Score=50.35 Aligned_cols=78 Identities=17% Similarity=0.302 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHhHHHHHHHHhcCC--------CHHHHHHHHHHHHhCCCCCCHHH
Q 003020 323 TYNTLIDTYGKAGQLKEASETFAQMLREGI-VPTTVTFNTMIHIYGNND--------QLAEVDSLIKKMEELHCPPDTRT 393 (856)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~ 393 (856)
+....|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 444556667777889999999999998888 888889988888776532 11233444444444444444444
Q ss_pred HHHHHHH
Q 003020 394 YNILIFL 400 (856)
Q Consensus 394 ~~~li~~ 400 (856)
|+.++..
T Consensus 107 Ynivl~~ 113 (120)
T PF08579_consen 107 YNIVLGS 113 (120)
T ss_pred HHHHHHH
Confidence 4444433
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.14 E-value=0.0098 Score=59.24 Aligned_cols=101 Identities=12% Similarity=0.044 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD--VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMM 744 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 744 (856)
..|...+..+.+.|++++|+..|+.+++..+... ...+..++.+|...|++++|...|+.+.+..|.+ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3444444444556777777777777766322111 2345566777777777777777777777665443 4455556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 745 LIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 745 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
+.++...|++++|.++|+++++..|.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 77777778888888888888777665
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.14 E-value=0.0011 Score=52.42 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 738 EFTYAMMLIMYKRNGRFEEATRIAKQMRES----GLI-SD-LLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 738 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
..+++.++.+|...|++++|+..++++++. |.. |+ ..++..++.+|...|++++|++++++.++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346788888999999999999999888754 222 12 46788999999999999999999998875
No 213
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.10 E-value=0.00072 Score=42.10 Aligned_cols=29 Identities=41% Similarity=0.496 Sum_probs=14.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 003020 231 TYGTLIDVCSKGGLKEEAVCWLERMNEGG 259 (856)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 259 (856)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555554443
No 214
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.08 E-value=0.011 Score=48.46 Aligned_cols=80 Identities=16% Similarity=0.340 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 742 AMMLIMYKRNGRFEEATRIAKQMRESGL-ISDLLSYNNVLGLYAVDG--------RFKDVIGTFKDMVNAAIQPDDFTFK 812 (856)
Q Consensus 742 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~g~~p~~~~~~ 812 (856)
...+.-+...+++...-.+|+.+...|+ .|+..+|+.++....+.. +.-+.+.+|+.|+..+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666677889999999999988888 788889988887766443 3456789999999999999999999
Q ss_pred HHHHHHHHc
Q 003020 813 SLGAVLMKC 821 (856)
Q Consensus 813 ~l~~~~~~~ 821 (856)
.++..|.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999988764
No 215
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.05 E-value=0.66 Score=50.20 Aligned_cols=123 Identities=12% Similarity=0.060 Sum_probs=75.5
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHH-HHH
Q 003020 460 DEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVM-VKA 538 (856)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-i~~ 538 (856)
+..++...+.--...|+.+.....|+++........+.|...+......|+.+-|..++....+...++......+ ...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3456777777778888888888888888877677777777777777777887777777766555443332222222 222
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChHHHH
Q 003020 539 YGMGRNYDKACNLFDSMTSHGAVPDKC-SYNSLIQILAGADLPHMAK 584 (856)
Q Consensus 539 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~A~ 584 (856)
.-..|+++.|..+++.+...- |+.. .-..-+....+.|..+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 334567788888887777652 4322 1122223334455555554
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.00 E-value=0.054 Score=52.12 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=22.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 644 FADVGNVKQAQSYFDAMESAGL--PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
+...|++.+|...|+.+...-. +--....-.++.++.+.|++++|...++..++
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555443210 01112333444444455555555555544444
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.97 E-value=0.13 Score=49.48 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=19.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHcCCHH
Q 003020 711 IDLYSERSMVRQAEEIFEIMKKKGDANEF---TYAMMLIMYKRNGRFE 755 (856)
Q Consensus 711 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 755 (856)
++.|.+.|.+..|..-++.+++..|.... ++..++.+|.+.|..+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 34444445555555555555444443332 2333444444444444
No 218
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.92 E-value=0.67 Score=48.18 Aligned_cols=149 Identities=8% Similarity=0.089 Sum_probs=85.8
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCcCh------hhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH--H
Q 003020 203 TLGKARKWSYVQSLWDEMSVKGIVPIN------STYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQM--Y 274 (856)
Q Consensus 203 ~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~ 274 (856)
.+.+++++.+|..+|.++.... ..+. ..-+.++++|... +.+.....+....+. .| ...|-.+..+ .
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 4567899999999999987642 2122 2345677777543 445444444444443 22 2233333333 4
Q ss_pred HhcCChhHHHHHHHHHhhhcc----ccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003020 275 KKAGEFQKAEEFFKKWSSRES----LRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLRE 350 (856)
Q Consensus 275 ~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 350 (856)
.+.+++.+|.+.+..+..... .-...++... -+|-..=+..++.+...|++.++..+++++...
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l------------~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQL------------FSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHH------------hhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 578999999999988864210 0000011000 012233355677778888888888888887654
Q ss_pred CCC----CCHHhHHHHHHHHhc
Q 003020 351 GIV----PTTVTFNTMIHIYGN 368 (856)
Q Consensus 351 g~~----p~~~~~~~ll~~~~~ 368 (856)
=++ -+..+|+.++-.+++
T Consensus 158 llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 158 LLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HhhhhhcccHHHHHHHHHHHhH
Confidence 322 567777776655543
No 219
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.92 E-value=0.036 Score=48.32 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=67.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHH
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDL--LSYNNVLGLYA 784 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~ 784 (856)
-.....+.|++++|.+.|+.+....|.. ..+...|+.+|.+.|++++|+..+++.+++.|.-.- ..+...+-++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3444557899999999999998887544 456778899999999999999999999999877222 34444454455
Q ss_pred hcCC---------------HHHHHHHHHHHHHc
Q 003020 785 VDGR---------------FKDVIGTFKDMVNA 802 (856)
Q Consensus 785 ~~g~---------------~~~A~~~~~~~~~~ 802 (856)
.+.. ..+|..-|+++++.
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 5544 56677777777663
No 220
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.89 E-value=0.91 Score=49.19 Aligned_cols=207 Identities=8% Similarity=0.014 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHHHCC---C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003020 614 QLEMAEEVYKDMIRFN---V----EPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLK 686 (856)
Q Consensus 614 ~~~~A~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 686 (856)
...+....|+.-++.- + +++..+|...+..-...|+.+.+.-+|++..-- +..-...|--.+.-....|+.+
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~ 348 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVS 348 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchh
Confidence 3444455555544431 1 235568888888888889999988888887532 1222344545555555568888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHH---HHHHH
Q 003020 687 EAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEAT---RIAKQ 763 (856)
Q Consensus 687 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~ 763 (856)
-|..++....+...+..+.+--.-.......|+++.|..+++.+.+.-|.....-..-+....+.|+.+.+. .++..
T Consensus 349 ~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~ 428 (577)
T KOG1258|consen 349 LANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSS 428 (577)
T ss_pred HHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHH
Confidence 888888777765443333332222223445778999999999988877555555555666677888888877 33333
Q ss_pred HHHcCCCCC--HHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 764 MRESGLISD--LLSYNNVLG-LYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 764 ~~~~~~~p~--~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
..+....+. ...+...++ .+.-.++.+.|..++.++.+. +.++...|..+++.....+
T Consensus 429 ~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 429 IYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 332221111 122222332 234567788888888888885 3444455777777776666
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=96.88 E-value=0.036 Score=49.55 Aligned_cols=92 Identities=11% Similarity=-0.004 Sum_probs=74.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHH
Q 003020 467 LTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYD 546 (856)
Q Consensus 467 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 546 (856)
...-+...|++++|..+|+-+...++.+.+-|..++.++...+++++|+..|..+....+.|+....-...+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 34445677888888888888888888888888888888888888888888888777776777777777888888888888
Q ss_pred HHHHHHHHHHhC
Q 003020 547 KACNLFDSMTSH 558 (856)
Q Consensus 547 ~A~~~~~~m~~~ 558 (856)
.|...|....+.
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 888888887763
No 222
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.84 E-value=0.021 Score=53.19 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=39.4
Q ss_pred CCHHhHHHHHHHHh-----cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003020 354 PTTVTFNTMIHIYG-----NNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAK 403 (856)
Q Consensus 354 p~~~~~~~ll~~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 403 (856)
.+..+|..++..|. +.|..+-+...+..|.+.|+..|..+|+.|++.+=+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 46677777777775 457788888888888888888888899888887654
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.81 E-value=0.21 Score=51.85 Aligned_cols=162 Identities=16% Similarity=0.155 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 604 AVISSYMKLGQLEMAEEVYKDMIRFN---VEPDVVVYGVLINAFAD---VGNVKQAQSYFDAMESAGLPPNAVIYNSLIK 677 (856)
Q Consensus 604 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 677 (856)
.++-+|....+++..+++.+.+.... +......-..+.-++.+ .|+.++|+.++..+....-.+++.+|..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33444666666666666666665431 11111222233334444 6666666666666444334566666666665
Q ss_pred HHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH----HHHHHH---H-HHHhCC----CC
Q 003020 678 LYTK---------VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVR----QAEEIF---E-IMKKKG----DA 736 (856)
Q Consensus 678 ~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~-~~~~~~----~~ 736 (856)
.|-. ....++|+..|.+.-+ +.|+..+--.++..+...|.-. +..++- . .+.+++ ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5421 1125566666666544 2344433223333333333211 111111 1 111111 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
+-+.+.+++.++.-.|++++|.+.++++.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445555666666666666666666666655
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.75 E-value=0.026 Score=47.36 Aligned_cols=90 Identities=17% Similarity=0.061 Sum_probs=68.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHhcCC
Q 003020 713 LYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES-GLISDL---LSYNNVLGLYAVDGR 788 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~---~~~~~l~~~~~~~g~ 788 (856)
+....|+.+.|++.|.+.+...|..+.+|+.-..++.-+|+.++|+.-++++++. |+. .. .+|..-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 4567788888888888888777888888888888888888888888888888876 333 22 345666677778888
Q ss_pred HHHHHHHHHHHHHcC
Q 003020 789 FKDVIGTFKDMVNAA 803 (856)
Q Consensus 789 ~~~A~~~~~~~~~~g 803 (856)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888887777655
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.70 E-value=0.38 Score=49.98 Aligned_cols=169 Identities=14% Similarity=0.176 Sum_probs=113.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 638 GVLINAFADVGNVKQAQSYFDAMESAG---LPPNAVIYNSLIKLYTK---VGYLKEAQETYKLLRSLEASPDVYTSNCMI 711 (856)
Q Consensus 638 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 711 (856)
..++-+|....+++.-+++++.+.... +......-....-++.+ .|+.++|++++..+......+++.+|..++
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345557889999999999999997641 22233333345556667 899999999999976655668888998888
Q ss_pred HHHHH---------cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH----HHHHHHH----HHHHHcCC---CC
Q 003020 712 DLYSE---------RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRF----EEATRIA----KQMRESGL---IS 771 (856)
Q Consensus 712 ~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~----~~~~~~~~---~p 771 (856)
+.|-. ....++|+..|.+..+.. ++...=.+++..+...|.. .+..++- ..+.++|. ..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~-~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIE-PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCC-ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 87742 224789999999988876 3333222333334444432 2333333 22223332 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 772 DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 772 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
+-..+.+++.+..-.|++++|.+..++|... .|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL--KPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcch
Confidence 4455678889999999999999999999985 45544
No 226
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.68 E-value=0.74 Score=45.31 Aligned_cols=228 Identities=18% Similarity=0.079 Sum_probs=159.4
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCChHhHHHHHHHHHhcCCHHHHH
Q 003020 542 GRNYDKACNLFDSMTSHGAV-PDKCSYNSLIQILAGADLPHMAKRYLRKMQEA-GLVSDCIPYCAVISSYMKLGQLEMAE 619 (856)
Q Consensus 542 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 619 (856)
.+....+...+......... .....+......+...+....+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555566666665554222 13466667777777888888888777776652 23345556667777777788888898
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 620 EVYKDMIRFNVEPDVVVYGVLIN-AFADVGNVKQAQSYFDAMESAGL--PPNAVIYNSLIKLYTKVGYLKEAQETYKLLR 696 (856)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 696 (856)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...++++++...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888888654332 222222333 68888999999999998866321 1234455555555778889999999999888
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 697 SLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 697 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
..........+..+...+...++++.|...+.......+.....+..+...+...+.++++...+.+..+..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 74321135677788888888899999999999999887766666777777777777899999999999887654
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.64 E-value=0.0047 Score=48.79 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC---C-C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKG---D-A---NEFTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
+++.+..+|...|++++|+..++++.+.. + . -..++..++.++...|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666666666666666666655332 1 1 134667777777778888888877777765
No 228
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.61 E-value=0.021 Score=53.23 Aligned_cols=89 Identities=20% Similarity=0.282 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHc-----cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc----------------CCHHHHH
Q 003020 388 PPDTRTYNILIFLHAK-----NDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIR----------------RMVCEAE 446 (856)
Q Consensus 388 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------g~~~~A~ 446 (856)
..+..+|..++..|.+ .|.++-....+..|.+-|+..|..+|+.|+..+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4577888888888764 578899999999999999999999999999986432 2446699
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHHcCC
Q 003020 447 ELISEMDGGGLEIDEYTQSALTRMYIEAGM 476 (856)
Q Consensus 447 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 476 (856)
+++++|...|+.||..|+..+++.+.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999999977664
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.045 Score=53.90 Aligned_cols=151 Identities=9% Similarity=0.030 Sum_probs=88.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HH--HHHHHHHHHcCCHHH
Q 003020 647 VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVY--TS--NCMIDLYSERSMVRQ 722 (856)
Q Consensus 647 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~--~~l~~~~~~~g~~~~ 722 (856)
.|+..+|...++++++. .|.|...+.-.-.+|.-.|+.+.-...++++... ..+|.. +| ..+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45666666666666654 4556666666666666666666666666665542 112221 22 222233446677777
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 723 AEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI---SDLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 723 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
|++..++..+.++.|..+-.++...+...|++.++.++..+-...=-. .-...|-+.+-.+...+.++.|+++|++=
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 777777777777777777777777777777777777765554322000 01123444555566667777777777653
No 230
>PRK11906 transcriptional regulator; Provisional
Probab=96.60 E-value=0.17 Score=53.37 Aligned_cols=115 Identities=13% Similarity=0.072 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003020 684 YLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQ 763 (856)
Q Consensus 684 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 763 (856)
...+|.+.-++..+.+. .|......++.+..-.++++.|...|+++...+|....+|...+..+...|+.++|.+.+++
T Consensus 319 ~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 319 AAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34566777777777553 56777777777777788899999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 764 MRESGLISDLLS-YNNVLGLYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 764 ~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~ 800 (856)
+++..|.--... ....+..|+.. ..++|+.+|-+-.
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 434 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYKET 434 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhhcc
Confidence 988876532222 23333456654 4577777765533
No 231
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.58 E-value=0.0056 Score=41.76 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003020 740 TYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVL 780 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 780 (856)
++..++.+|...|++++|+++++++++..|. |+..|..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 4556666666666666666666666666665 656555554
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.55 E-value=0.025 Score=51.22 Aligned_cols=72 Identities=17% Similarity=0.186 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMR-----ESGLISDLLSYN 777 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~ 777 (856)
....++..+...|++++|...++++....|.+...|..++.+|...|+..+|+++|+++. +.|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 345667778899999999999999999999999999999999999999999999999885 468888876543
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.55 E-value=0.031 Score=58.48 Aligned_cols=66 Identities=14% Similarity=0.020 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003020 666 PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDV----YTSNCMIDLYSERSMVRQAEEIFEIMKKK 733 (856)
Q Consensus 666 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 733 (856)
|.+...++.++.+|...|++++|+..|++.++.. |+. ..|..+..+|...|+.++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556778888888888888888888888877743 442 34777788888888888888888888765
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.028 Score=57.38 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=87.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRSL-EASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG 752 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 752 (856)
.-++.|.+.|++..|...|+++... .. .+.-+.++..... ..-..++.+|+.+|.+.+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~--------------~~~~~~ee~~~~~-------~~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEY--------------RRSFDEEEQKKAE-------ALKLACHLNLAACYLKLK 271 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhc--------------cccCCHHHHHHHH-------HHHHHHhhHHHHHHHhhh
Confidence 4466677777777777777776551 10 0000011111111 112235778999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 753 RFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLM 819 (856)
Q Consensus 753 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 819 (856)
++.+|++..++.++.++. ++....--+.+|...|+++.|...|+++++ +.|++.....=+..|.
T Consensus 272 ~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLK 335 (397)
T ss_pred hHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence 999999999999999987 999999999999999999999999999999 6898876544443333
No 235
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.42 E-value=1.4 Score=45.43 Aligned_cols=101 Identities=13% Similarity=0.081 Sum_probs=45.6
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCCh
Q 003020 398 IFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGML 477 (856)
Q Consensus 398 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 477 (856)
|.-+...|+...|.++-.+.. -|+..-|...+.+++..+++++-.++-.. . -.+.-|-.++.+|.+.|..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHHHHCCCH
Confidence 333444455444444443332 14555555555555555555544443221 0 1223444445555555555
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHH
Q 003020 478 EKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERA 517 (856)
Q Consensus 478 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 517 (856)
.+|..+..++. ...-+..|.+.|.+.+|.+.
T Consensus 254 ~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPKIP---------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHH
Confidence 55544444421 13334555555555555443
No 236
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.31 E-value=0.16 Score=50.70 Aligned_cols=226 Identities=13% Similarity=0.009 Sum_probs=128.7
Q ss_pred ccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChHHHHHHHHH----HHHcC-CCCChHhHHHHHHHHHhcC
Q 003020 541 MGRNYDKACNLFDSMTSH--GAVPDKCSYNSLIQILAGADLPHMAKRYLRK----MQEAG-LVSDCIPYCAVISSYMKLG 613 (856)
Q Consensus 541 ~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~~g 613 (856)
...+.++|+..+.+.+.+ ....-..++..+..+.+..|.+++++..--. +.+.. -..-...|..+..++.+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554433 0111123444555566666666555433211 11110 0001223555556666666
Q ss_pred CHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC
Q 003020 614 QLEMAEEVYKDMIRF-NVEP---DVVVYGVLINAFADVGNVKQAQSYFDAMESAG-----LPPNAVIYNSLIKLYTKVGY 684 (856)
Q Consensus 614 ~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~ 684 (856)
++.+++.+-..-... |..| ......++..++...+.++++++.|+...+.. ....-.++..|...|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 666666655544432 1111 11334456677777788899999998886531 11223578888999999999
Q ss_pred HHHHHHHHHHHHh----CCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhCC--CC----CHHHHHHHHHHHH
Q 003020 685 LKEAQETYKLLRS----LEASPDVYTSN-----CMIDLYSERSMVRQAEEIFEIMKKKG--DA----NEFTYAMMLIMYK 749 (856)
Q Consensus 685 ~~~A~~~~~~~~~----~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~~~l~~~~~ 749 (856)
+++|+-+..+..+ .++..-..-|. .|.-++...|...+|.+..++..+.. .. .......+++.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 9998877655543 33322222233 33345667788888888877766543 22 3345567888999
Q ss_pred HcCCHHHHHHHHHHHHH
Q 003020 750 RNGRFEEATRIAKQMRE 766 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~ 766 (856)
..|+.+.|..-|+++..
T Consensus 258 ~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQAMG 274 (518)
T ss_pred hcccHhHHHHHHHHHHH
Confidence 99999999888887754
No 237
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.30 E-value=0.3 Score=45.28 Aligned_cols=93 Identities=13% Similarity=-0.073 Sum_probs=69.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCC
Q 003020 164 RSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGG 243 (856)
Q Consensus 164 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 243 (856)
.+.++...|-++.|+--|..++... |.-+.+||.+.--+...|+++.|.+.|+...+.++. ...+...-+-++.-.|
T Consensus 71 RGvlYDSlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~g 147 (297)
T COG4785 71 RGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGG 147 (297)
T ss_pred hcchhhhhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecC
Confidence 3455666778888888898888764 344577898888888999999999999999998766 3344444444555678
Q ss_pred CHHHHHHHHHHHHhCC
Q 003020 244 LKEEAVCWLERMNEGG 259 (856)
Q Consensus 244 ~~~~A~~~~~~~~~~~ 259 (856)
+++-|.+-|-+.-+..
T Consensus 148 R~~LAq~d~~~fYQ~D 163 (297)
T COG4785 148 RYKLAQDDLLAFYQDD 163 (297)
T ss_pred chHhhHHHHHHHHhcC
Confidence 9999988777776653
No 238
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=1.2 Score=50.00 Aligned_cols=180 Identities=17% Similarity=0.163 Sum_probs=98.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCh--hhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 003020 196 HYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPIN--STYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQM 273 (856)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 273 (856)
....-+..+.+...+.-|+.+-.. .+..++. ......++-+.+.|++++|...|-+.+.. ++|.. ++.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHH
Confidence 344566777777777777776543 2222221 23344445567788888888888776643 23322 2233
Q ss_pred HHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003020 274 YKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIV 353 (856)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 353 (856)
|....++..--.+++.+.. ..-.+...-..|+.+|.+.++.+.-.++.+... .|..
T Consensus 407 fLdaq~IknLt~YLe~L~~-----------------------~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~ 462 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHK-----------------------KGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW 462 (933)
T ss_pred hcCHHHHHHHHHHHHHHHH-----------------------cccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce
Confidence 3333333333334444321 112234455678888888888877666655443 2211
Q ss_pred CCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 003020 354 PTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMK 418 (856)
Q Consensus 354 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 418 (856)
..-....+..+.+.+-+++|..+-.+... +......+ +-..+++++|++.+..+.
T Consensus 463 --~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 463 --FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred --eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 11234455666666777777666655442 33333333 334677888888887764
No 239
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.20 E-value=0.0069 Score=38.42 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=22.5
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003020 761 AKQMRESGLISDLLSYNNVLGLYAVDGRFKDVI 793 (856)
Q Consensus 761 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 793 (856)
|+++++..|. ++.+|+.++.+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 5666677766 7777777777777777777764
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.05 E-value=0.13 Score=49.99 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANE---FTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS--DLLSYNNVL 780 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~ 780 (856)
.|+.-++.+ ..|++..|...|...++..|.+. .++.-|+.++..+|++++|..+|..+.+.-|.. -+..+.-|+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 465555433 55668888888888777775543 356667788888888888888888777765441 346777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 003020 781 GLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 781 ~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
.+..+.|+.++|..+|++.++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888888888888888887774
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.8 Score=43.51 Aligned_cols=203 Identities=13% Similarity=0.140 Sum_probs=107.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003020 567 YNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFAD 646 (856)
Q Consensus 567 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 646 (856)
|.....+|....++++|...+.+..+. ...+... +-....++.|.-+.+++.+. .--+..|+--...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrsl-------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSL-------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccH-------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444445666677777777766665531 1111111 11123345555555555542 2223355555666777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHHcCCHH
Q 003020 647 VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL---EA--SPDVYTSNCMIDLYSERSMVR 721 (856)
Q Consensus 647 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~p~~~~~~~l~~~~~~~g~~~ 721 (856)
+|.++.|-..+++.-+. ....++++|+++|++.... +- ..-...+....+.+.+...++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 77777766666655331 1233445555555544331 10 011224455556666777777
Q ss_pred HHHHHHHHHHhCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHH
Q 003020 722 QAEEIFEIMKKKG------DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI---SDLLSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 722 ~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A 792 (856)
+|-..+.+-.... +.-...+...+-.+....++..|.+.++..-..+-. -+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 7766655432211 222234566666777777888888888876554211 1446677777765 45676666
Q ss_pred HHHH
Q 003020 793 IGTF 796 (856)
Q Consensus 793 ~~~~ 796 (856)
..++
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 5443
No 242
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.87 E-value=0.071 Score=48.18 Aligned_cols=99 Identities=11% Similarity=-0.013 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--
Q 003020 721 RQAEEIFEIMKKKGDANEFTYAMMLIMYKRN----------GRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGR-- 788 (856)
Q Consensus 721 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-- 788 (856)
+.|.+.++.....+|.|...++..+.++... .-+++|+.-|++++..+|. ...++..++.+|...+.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhc
Confidence 4444455544444555555554444443322 1234455555555555554 44666666666654443
Q ss_pred ---------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 789 ---------FKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 789 ---------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
+++|...|+++.+ ..|+..+|+.-+....++-
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~kap 127 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAKAP 127 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHTHH
T ss_pred CChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHhhH
Confidence 3445555555554 3677776666655554433
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.83 E-value=0.5 Score=51.91 Aligned_cols=117 Identities=16% Similarity=0.062 Sum_probs=78.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHcCCHHH
Q 003020 682 VGYLKEAQETYKLLRSLEASPDVYTSNC-MIDLYSERSMVRQAEEIFEIMKKKG----DANEFTYAMMLIMYKRNGRFEE 756 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 756 (856)
....+.|.++++.+.+. -|+...|.. -.+.+...|+.++|++.++++.... ......+.-+++.+.-..+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34567777888777763 356554432 3455667788888888888765422 2234456677888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCH-------HHHHHHHHHHHH
Q 003020 757 ATRIAKQMRESGLISDLLSY-NNVLGLYAVDGRF-------KDVIGTFKDMVN 801 (856)
Q Consensus 757 A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~-------~~A~~~~~~~~~ 801 (856)
|...+.++.+..-. +...| +..+.++...|+. ++|.+++++...
T Consensus 324 A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88888888876543 33333 4445666677877 788888877654
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.80 E-value=0.28 Score=53.82 Aligned_cols=148 Identities=15% Similarity=0.108 Sum_probs=99.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCHHHHHH
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRSL-EASPDV-----YTSNCMIDLYS----ERSMVRQAEEIFEIMKKKGDANEFTYAM 743 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-----~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 743 (856)
.++....-.|+-+.+++.+....+. ++.-.. ..|..++..++ .....+.|.++++.+....|........
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 3444445556666666666655542 221111 12222232222 3567899999999999998988888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH
Q 003020 744 MLIMYKRNGRFEEATRIAKQMRESG---LISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLG-AVLM 819 (856)
Q Consensus 744 l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~-~~~~ 819 (856)
-++.+...|+.++|++.++++.+.. +.....++.-+++++.-.++|++|...|.++.+.. ..+..+|.-+. .++.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Confidence 8999999999999999999877532 11234677889999999999999999999999853 33444444333 3334
Q ss_pred HcC
Q 003020 820 KCG 822 (856)
Q Consensus 820 ~~G 822 (856)
..|
T Consensus 352 ~l~ 354 (468)
T PF10300_consen 352 MLG 354 (468)
T ss_pred hhc
Confidence 444
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.77 E-value=2.1 Score=41.56 Aligned_cols=53 Identities=23% Similarity=0.175 Sum_probs=25.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHH
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDANE---FTYAMMLIMYKRNGRFEEATRIAK 762 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~ 762 (856)
+.+-|.+.|.+-.|..-++.|.+..+... ..+..|..+|...|-.++|.+.-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 34445555555555555555555443222 233344455555555555555444
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.66 E-value=0.029 Score=38.22 Aligned_cols=41 Identities=7% Similarity=0.035 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLI 746 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 746 (856)
++..+...|...|++++|+++++++++..|.|+..|..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 46678888888999999999999999888888888877654
No 247
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.63 E-value=2.2 Score=41.20 Aligned_cols=120 Identities=19% Similarity=0.175 Sum_probs=55.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCC--CCHHHHHHHHHHHHhcC
Q 003020 577 ADLPHMAKRYLRKMQEAGLVSD---CIPYCAVISSYMKLGQLEMAEEVYKDMIR---FNVE--PDVVVYGVLINAFADVG 648 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~l~~~~~~~g 648 (856)
...+++|+.-|.+.++...... -.....++..+.+.|++++.+..|.+++. ..+. -+..+.|++++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456666666666655432211 22234445556666666666666666542 1111 12334555555444444
Q ss_pred CHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 649 NVKQAQSYFDAMESA-----GLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLR 696 (856)
Q Consensus 649 ~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 696 (856)
+.+--..+|+.-++. +-..--.|-+-++..|...|.+..-.++++++.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 444444444433221 000111222345555555555555555555443
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.61 E-value=0.32 Score=47.47 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=41.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHHcCCH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPP---NAVIYNSLIKLYTKVGYLKEAQETYKLLRS-LEASPD-VYTSNCMIDLYSERSMV 720 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~ 720 (856)
+.|++.+|...|...++.. |- ....+..|+.++...|++++|..+|..+.+ .+-.|. +..+-.|..+..+.|+.
T Consensus 153 ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 3444555555555555431 11 112334455555555555555555544444 111121 23333444444455555
Q ss_pred HHHHHHHHHHHhCCCCCHH
Q 003020 721 RQAEEIFEIMKKKGDANEF 739 (856)
Q Consensus 721 ~~A~~~~~~~~~~~~~~~~ 739 (856)
++|...|+++.+..|....
T Consensus 232 d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 232 DEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHHHHCCCCHH
Confidence 5555555555554444433
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=1.5 Score=43.29 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=76.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003020 643 AFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQ 722 (856)
Q Consensus 643 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 722 (856)
.....|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+-...-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4456677777777777766653 334455556666777777777777776654321111111111122333334333333
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHH
Q 003020 723 AEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES--GLISDLLSYNNVLGLYAVDGRFK 790 (856)
Q Consensus 723 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~ 790 (856)
...+-.++- .+|.|...-..++..+...|+.++|.+.+-.+++. +.. |...-..++..+..-|..+
T Consensus 222 ~~~l~~~~a-adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 222 IQDLQRRLA-ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 333333332 23666666666777777777777776666655544 232 4445555555555555333
No 250
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.54 E-value=0.36 Score=40.83 Aligned_cols=92 Identities=16% Similarity=0.023 Sum_probs=74.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCcChh---hHHHHHHHHH
Q 003020 165 SIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVK-GIVPINS---TYGTLIDVCS 240 (856)
Q Consensus 165 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~---~~~~l~~~~~ 240 (856)
+..+.+.|+++.|++.|.+++.. .+.+..+||.-..++.-+|+.++|..-+++.++. |.. ... +|..-...|.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHH
Confidence 45577889999999999998876 3677889999999999999999999999998874 322 222 4555566788
Q ss_pred cCCCHHHHHHHHHHHHhCC
Q 003020 241 KGGLKEEAVCWLERMNEGG 259 (856)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~ 259 (856)
..|+-+.|+.-|+.+-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 8999999999999998877
No 251
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.52 E-value=0.18 Score=46.11 Aligned_cols=94 Identities=17% Similarity=0.020 Sum_probs=74.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASPD----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG 752 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 752 (856)
+-+...|++++|..-|..+++.-.+.. ...|..-..++.+.+.++.|++-..++++.+|....++..-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 445678899999999988887432211 3356666667788899999999999999988888888888888899999
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 003020 753 RFEEATRIAKQMRESGLI 770 (856)
Q Consensus 753 ~~~~A~~~~~~~~~~~~~ 770 (856)
.+++|+.-|+++++..|.
T Consensus 183 k~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPS 200 (271)
T ss_pred hHHHHHHHHHHHHHhCcc
Confidence 999999999999998766
No 252
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=2.4 Score=40.41 Aligned_cols=205 Identities=13% Similarity=0.077 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 003020 195 IHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMY 274 (856)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 274 (856)
..|..-..+|....+++.|...+.+..+ +...|..-|+ . ...++.|.-+.+++.+. .--+..++.....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 4455556677777888888888877664 1221222222 1 12344455555555443 11223455555667
Q ss_pred HhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 003020 275 KKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLRE---G 351 (856)
Q Consensus 275 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g 351 (856)
..+|..+.|-..+++... ....-++++|+++|++...- +
T Consensus 102 ~E~GspdtAAmaleKAak--------------------------------------~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK--------------------------------------ALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHhCCcchHHHHHHHHHH--------------------------------------HhhcCCHHHHHHHHHHHHHHHhcc
Confidence 777777777766666532 11334556666666654321 1
Q ss_pred C--CCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC----CCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcC---
Q 003020 352 I--VPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELH----CPPDT-RTYNILIFLHAKNDKISMASRYFWKMKEAN--- 421 (856)
Q Consensus 352 ~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 421 (856)
- +.-...+....+.+.+...+++|-..+.+-.... --++. ..|-+.|-.|.-..++..|.+.++.--+.+
T Consensus 144 dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~ 223 (308)
T KOG1585|consen 144 DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL 223 (308)
T ss_pred chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc
Confidence 0 0011123333444555555555544443322110 01111 234444445555566666666666633221
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 003020 422 LEPDIVSYRTLLYAYSIRRMVCEAEEL 448 (856)
Q Consensus 422 ~~~~~~~~~~ll~~~~~~g~~~~A~~~ 448 (856)
-+.+..+...|+.+| ..|+.+++..+
T Consensus 224 ~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 224 KSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred ChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 122444555566555 34555544443
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.45 E-value=2.7 Score=40.78 Aligned_cols=55 Identities=15% Similarity=0.065 Sum_probs=27.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 744 MLIMYKRNGRFEEATRIAKQMRESGLISD--LLSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 744 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
+++-|.+.|.+..|..-++++++.-+... ...+..+..+|...|-.++|.+.-+-
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 34455555555555555555555532211 13344444555555555555554333
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.41 E-value=0.42 Score=47.95 Aligned_cols=226 Identities=10% Similarity=0.077 Sum_probs=140.9
Q ss_pred cCCChHHHHHHHHHHHHcC--CCCChHhHHHHHHHHHhcCCHHHHHHH----HHHHHHCC-CCCCHHHHHHHHHHHHhcC
Q 003020 576 GADLPHMAKRYLRKMQEAG--LVSDCIPYCAVISSYMKLGQLEMAEEV----YKDMIRFN-VEPDVVVYGVLINAFADVG 648 (856)
Q Consensus 576 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~-~~~~~~~~~~l~~~~~~~g 648 (856)
...+.+.|+..+.+.+..- ...-..++..+..+.+..|.+++++.. .+...+.. ...-...|..+.+++.+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666665544321 011223456667777788877776543 22222211 0011235556666666666
Q ss_pred CHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C--CC--CHHHHHHHHHHHHHcCC
Q 003020 649 NVKQAQSYFDAMESA-GLPP---NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLE-A--SP--DVYTSNCMIDLYSERSM 719 (856)
Q Consensus 649 ~~~~A~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~--~p--~~~~~~~l~~~~~~~g~ 719 (856)
++.+++.+-..-... |..| .-....++..++...+.++++++.|+...+.. - .| ....+..|...|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 666666655544331 2122 11334457778888889999999999877621 1 11 23467889999999999
Q ss_pred HHHHHHHHHHHHhCC----CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHH
Q 003020 720 VRQAEEIFEIMKKKG----DANE------FTYAMMLIMYKRNGRFEEATRIAKQMRES----GLIS-DLLSYNNVLGLYA 784 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~----~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~ 784 (856)
+++|.-+..++.+.- -.|. .+...|.-++...|+.-+|.+.-+++.+. |-.+ -..+...++++|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 999998887665432 1222 24567788899999999998888887654 3221 2245678899999
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003020 785 VDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 785 ~~g~~~~A~~~~~~~~~ 801 (856)
..|+.+.|..-|+.+..
T Consensus 258 ~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQAMG 274 (518)
T ss_pred hcccHhHHHHHHHHHHH
Confidence 99999999888887544
No 255
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=2 Score=42.49 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=94.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 608 SYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKE 687 (856)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 687 (856)
.....|++.+|...|......... +...-..++.+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345678888888888888876433 4556667788888888888888888877543212222233334455555555555
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 688 AQETYKLLRSLEASP-DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG--DANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 688 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
...+-+..-. .| |...-..+...+...|+.++|.+.+=.+++.+ -.|..+-..|+..+.-.|..+.+..
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence 4444444433 24 56666677888888899999988877777665 4555666666666666664444333
No 256
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.34 E-value=0.02 Score=36.32 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=29.0
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 727 FEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 727 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
|+++++..|.|+.+|+.++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 567788889999999999999999999999863
No 257
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.33 E-value=4.1 Score=42.05 Aligned_cols=109 Identities=16% Similarity=0.033 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhh
Q 003020 428 SYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGE 507 (856)
Q Consensus 428 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 507 (856)
+.+..+.-+...|+...|.++-.+.. .||..-|...+.+++..+++++-..+... ..++-.|...+..+.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLK 249 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHH
Confidence 44445556666777777766655542 35666777777777777777766554321 3345667777777777
Q ss_pred cCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003020 508 RGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDS 554 (856)
Q Consensus 508 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 554 (856)
.|+..+|.....++. +..-+..|.+.|++.+|.+.--+
T Consensus 250 ~~~~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777665522 24556677777777777665433
No 258
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=7.3 Score=44.20 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTV--TFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIF 399 (856)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 399 (856)
.....-+....+...++.|+.+-+.- +..++.. .......-+.+.|++++|...+-+.+.. +.| ..+|.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 34455677778888888888776543 2222221 2333345556789999999888777632 223 23455
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-CCCHhhHHHHHHHHHHcCChH
Q 003020 400 LHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGL-EIDEYTQSALTRMYIEAGMLE 478 (856)
Q Consensus 400 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~ 478 (856)
-|....+..+-..+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+.-. .|. ..| ....+..+.+.+-.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLD 480 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHH
Confidence 56666677777788888888886 455666788999999999988887776654 221 112 233455566666666
Q ss_pred HHHHHHHHH
Q 003020 479 KSWLWFRRF 487 (856)
Q Consensus 479 ~a~~~~~~~ 487 (856)
+|..+-.+.
T Consensus 481 ~a~~LA~k~ 489 (933)
T KOG2114|consen 481 EAELLATKF 489 (933)
T ss_pred HHHHHHHHh
Confidence 665544433
No 259
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.15 E-value=0.26 Score=45.11 Aligned_cols=96 Identities=8% Similarity=0.094 Sum_probs=80.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003020 711 IDLYSERSMVRQAEEIFEIMKKKGDANE-----FTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV 785 (856)
Q Consensus 711 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 785 (856)
+.-+...|++++|..-|..++..-|+.+ ..|..-+.++.+.+.++.|+.-..++++++|. ...+..--+.+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 3456789999999999999998876543 35667778889999999999999999999887 66667777889999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 786 DGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 786 ~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
..++++|++=|+++++. .|...
T Consensus 181 ~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred hhhHHHHHHHHHHHHHh--CcchH
Confidence 99999999999999984 66554
No 260
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.09 E-value=7.7 Score=43.88 Aligned_cols=247 Identities=15% Similarity=0.073 Sum_probs=144.3
Q ss_pred HccCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 003020 540 GMGRNYDKACNLFDSMTS-------HGAVPDKCSYNSLIQILAGAD-----LPHMAKRYLRKMQEAGLVSDCIPYCAVIS 607 (856)
Q Consensus 540 ~~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 607 (856)
....+.+.|+..|+.+.+ .+ .......+..+|.+.. +.+.|..++.+.-+.|. |+.......+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 355677777777777766 44 2334555666666643 56678888888887763 33333322222
Q ss_pred HHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003020 608 SYMK-LGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFA----DVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKV 682 (856)
Q Consensus 608 ~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 682 (856)
.... ..+...|.++|..+.+.|. +.++-.+..+|. ...+...|..++.+..+.| .|...--...+..+..
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence 2222 2457889999999988773 222222332222 2347888999999998887 3333222333334444
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc----
Q 003020 683 GYLKEAQETYKLLRSLEASPDVYTSNCMIDLY---SE----RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN---- 751 (856)
Q Consensus 683 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 751 (856)
+.++.+.-.+..+.+.+.+.....-..++... .. ..+...+...+.+.... .+......|...|...
T Consensus 411 ~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~~a~~~lgd~y~~g~g~~ 488 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ--GNADAILKLGDYYYYGLGTG 488 (552)
T ss_pred ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc--cCHHHHhhhcceeeecCCCC
Confidence 77888877777776655422111111111111 11 22556677777766654 4556666777766544
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 003020 752 GRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV----DGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 752 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 802 (856)
.+++.|...|.+..+.+ .....+++..+.. .. +..|.+++++..+.
T Consensus 489 ~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 489 RDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEE 538 (552)
T ss_pred CChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence 35888888888888775 4555566655542 22 67788888877664
No 261
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.97 E-value=2 Score=36.62 Aligned_cols=64 Identities=23% Similarity=0.335 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 707 SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 707 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
....++.+..+|+-+.-.++++.+.+.+.+++.....++.+|.+.|+..++.++++++-+.|.+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3444555666666666666666666555666666666666666666666666666666666643
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.96 E-value=2.1 Score=45.53 Aligned_cols=143 Identities=12% Similarity=0.131 Sum_probs=77.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003020 611 KLGQLEMAEEVYKDMIRFNVEPDVV-VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQ 689 (856)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 689 (856)
+..++..-++.-+++++. .||-. .|..| +--......+|..++++..+.|- ..+..- ......|..-
T Consensus 180 RERnp~aRIkaA~eALei--~pdCAdAYILL--AEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g~~~--- 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEI--NPDCADAYILL--AEEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHGHFW--- 247 (539)
T ss_pred hcCCHHHHHHHHHHHHHh--hhhhhHHHhhc--ccccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhcccchh---
Confidence 444555555565666553 34433 33222 22234557788888887766541 111000 0001112111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 690 ETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA--NEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 690 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
+........|-...-..+..++.+.|+.++|++.++++.+..|. +..+...|+.++...+.+.++..++.+-.+.
T Consensus 248 ---e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 248 ---EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred ---hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111112222333345666667788888888888888776544 3446778888888888888888888887654
Q ss_pred C
Q 003020 768 G 768 (856)
Q Consensus 768 ~ 768 (856)
.
T Consensus 325 ~ 325 (539)
T PF04184_consen 325 S 325 (539)
T ss_pred c
Confidence 3
No 263
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.85 E-value=0.68 Score=46.01 Aligned_cols=151 Identities=14% Similarity=0.017 Sum_probs=88.1
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCH
Q 003020 575 AGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVV----VYGVLINAFADVGNV 650 (856)
Q Consensus 575 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~ 650 (856)
...|++.+|-..++++++. ++.|...+.-.-++|.-.|+.+.-...++++... ..+|.. .-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3466667777777777664 4556666666667777777777777777777643 123332 223334445567777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHHcCCHHHHHHH
Q 003020 651 KQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEAS-PD---VYTSNCMIDLYSERSMVRQAEEI 726 (856)
Q Consensus 651 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~---~~~~~~l~~~~~~~g~~~~A~~~ 726 (856)
++|.+.-++..+.+ +.|.-.-.++...+...|++.++.++..+-... .+ .+ ...|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 77777777776654 445555566666677777777777765443220 00 00 11111222334455777777777
Q ss_pred HHH
Q 003020 727 FEI 729 (856)
Q Consensus 727 ~~~ 729 (856)
|++
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 764
No 264
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.72 E-value=1.7 Score=38.19 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=25.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPP---NAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
.+.|++++|.+.|+.+... .|. ....--.++.+|.+.|++++|...+++.++
T Consensus 21 l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3445555555555555443 111 123334445555555555555555555555
No 265
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.61 E-value=2.6 Score=36.06 Aligned_cols=139 Identities=14% Similarity=0.158 Sum_probs=80.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS-LEASPDVYTSNCMIDLYSERSMVRQA 723 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A 723 (856)
.-.|..++..++..+.... .+..-+|.++--....-+-+-..++++.+-+ .++.+- .-...++.+|...|..
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~--- 85 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKL--- 85 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcch---
Confidence 3467777888888777663 3455555555444444444444444444332 111111 0112344445444432
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003020 724 EEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAA 803 (856)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 803 (856)
.......+..+..+|+-+.-.++++.+.+. -.+++.....++.+|.+.|+..++-+++.++-+.|
T Consensus 86 --------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 86 --------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 233445567788899999999999998863 34689999999999999999999999999999988
Q ss_pred CC
Q 003020 804 IQ 805 (856)
Q Consensus 804 ~~ 805 (856)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 64
No 266
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.55 E-value=13 Score=44.02 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=12.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 742 AMMLIMYKRNGRFEEATRIAKQMR 765 (856)
Q Consensus 742 ~~l~~~~~~~g~~~~A~~~~~~~~ 765 (856)
..|+.-+..+++.-+|-++..+..
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 344455555555555555554444
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.52 E-value=0.5 Score=51.12 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=87.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHH
Q 003020 207 ARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEF 286 (856)
Q Consensus 207 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 286 (856)
.|+++++.++...-.-. +.-...-.+.+++.+-+.|.++.|+++-..-. .-.....+.|+++.|.++
T Consensus 274 ~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEI 340 (443)
T ss_dssp TT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHH
T ss_pred cCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHH
Confidence 67777766665411100 00123346777777888888888877644321 123345567888888776
Q ss_pred HHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 003020 287 FKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIY 366 (856)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 366 (856)
.++.. +...|..|.....++|+++-|.+.|.+... |..|+-.|
T Consensus 341 a~~~~----------------------------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy 383 (443)
T PF04053_consen 341 AKELD----------------------------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLY 383 (443)
T ss_dssp CCCCS----------------------------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHH
T ss_pred HHhcC----------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHH
Confidence 64332 456788888888888888888888877532 45555566
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 003020 367 GNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWK 416 (856)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 416 (856)
.-.|+.+...++.+.....| -+|....++.-.|++++..+++.+
T Consensus 384 ~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 384 SSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67777777777777766554 133444444555666666666544
No 268
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.45 E-value=2.4 Score=37.77 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=16.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003020 606 ISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFAD 646 (856)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 646 (856)
+..+...+.+......++.+...+ ..+....+.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 333333344444444444444333 1233344444444443
No 269
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=11 Score=42.39 Aligned_cols=111 Identities=13% Similarity=0.117 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYK 749 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 749 (856)
.+.+--+.-+...|+..+|.++-++. .+ ||-..|-.-+.++...+++++-+++-++.. .|.-|.-...+|.
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~F---ki-pdKr~~wLk~~aLa~~~kweeLekfAkskk-----sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDF---KI-PDKRLWWLKLTALADIKKWEELEKFAKSKK-----SPIGYLPFVEACL 755 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhc---CC-cchhhHHHHHHHHHhhhhHHHHHHHHhccC-----CCCCchhHHHHHH
Confidence 34555566677889989998876553 34 787777777888999999988777765543 2556777888999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 750 RNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
++|+.++|.+++-+.-.. . ....+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~l------~---ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL------Q---EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCCh------H---HHHHHHHHhccHHHHHHHHHH
Confidence 999999999988765321 1 567889999999998776544
No 270
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.35 E-value=2.7 Score=45.56 Aligned_cols=156 Identities=17% Similarity=0.153 Sum_probs=85.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003020 610 MKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQ 689 (856)
Q Consensus 610 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 689 (856)
.-.++++++.++.+.-.-. +..+....+.++..+.+.|.++.|+.+... +. .-.+...+.|+++.|.
T Consensus 272 v~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHH
T ss_pred HHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHH
Confidence 3456777766665411100 111244566777777777777777765432 21 2234456677777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 690 ETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 690 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
++.+ ..++...|..|.+...++|+++-|++.+++... +..|+..|.-.|+.+.-.++.+.+.+.|-
T Consensus 339 ~~a~------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 339 EIAK------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHCC------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHH------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 6622 235666788888888888888888877777652 55667777777777777777666665542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 770 ISDLLSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 770 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
++....++.-.|+.++.++++.+
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333444555666665555543
No 271
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.29 E-value=8.3 Score=40.60 Aligned_cols=37 Identities=8% Similarity=0.073 Sum_probs=21.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHH
Q 003020 784 AVDGRFKDVIGTFKDMVNAAIQPDDFT--FKSLGAVLMK 820 (856)
Q Consensus 784 ~~~g~~~~A~~~~~~~~~~g~~p~~~~--~~~l~~~~~~ 820 (856)
....++..|+++|+++.+-+-..+++| ...-+.++.+
T Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (831)
T PRK15180 787 MHLRDYTQALQYWQRLEKVNGPTEPVTRQISTCITALQK 825 (831)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhh
Confidence 455678899999998877432333333 4444444443
No 272
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.19 E-value=0.11 Score=32.78 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 775 SYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 775 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+|..++.+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555555555555555555554
No 273
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.19 E-value=7.3 Score=39.60 Aligned_cols=62 Identities=19% Similarity=0.036 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCChH---HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003020 566 SYNSLIQILAGADLPH---MAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRF 628 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 628 (856)
++..++.++...+..+ +|..+++.+.... +..+.++..-+..+.+.++.+++.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444555555554443 2333333333221 222333434444444455566666666666543
No 274
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.13 E-value=11 Score=43.37 Aligned_cols=88 Identities=8% Similarity=0.065 Sum_probs=37.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCChHhHHHHHHHHHhc--
Q 003020 536 VKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGL-VSDCIPYCAVISSYMKL-- 612 (856)
Q Consensus 536 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-- 612 (856)
..++.-.|.++.|++.+-+. .+...+.+.+...+..+ |-+......-..++.... .|...-+..||..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 34555678889888887761 12233444444433322 211111111122221110 01114466777777663
Q ss_pred -CCHHHHHHHHHHHHHC
Q 003020 613 -GQLEMAEEVYKDMIRF 628 (856)
Q Consensus 613 -g~~~~A~~~~~~~~~~ 628 (856)
.++.+|.+.|--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 5778888887766543
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.04 E-value=0.57 Score=46.50 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRE-----SGLISDLLSYNN 778 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 778 (856)
..++..++..+...|+++.+.+.++++....|.+...|..++.+|.+.|+...|+..|+++.+ .|+.|.+.+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345556666677777777777777777777777777777777777777777777777766654 455555555544
Q ss_pred HHHH
Q 003020 779 VLGL 782 (856)
Q Consensus 779 l~~~ 782 (856)
+..+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.04 E-value=0.59 Score=46.43 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN-----AAIQPDDFTFKS 813 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~ 813 (856)
.++..++..+...|+++.+...++++++..|- +...|..++.+|.+.|+...|+..|+++.+ .|+.|.......
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35667788888889999999999999998887 888899999999999999999999888765 688898888777
Q ss_pred HHHHHHH
Q 003020 814 LGAVLMK 820 (856)
Q Consensus 814 l~~~~~~ 820 (856)
....+..
T Consensus 233 y~~~~~~ 239 (280)
T COG3629 233 YEEILRQ 239 (280)
T ss_pred HHHHhcc
Confidence 7777433
No 277
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.03 E-value=0.26 Score=48.85 Aligned_cols=95 Identities=16% Similarity=0.081 Sum_probs=50.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 003020 641 INAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMV 720 (856)
Q Consensus 641 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 720 (856)
.+-|.++|++++|+.+|...+... +-|++++..-..+|.+..++..|..-....+..+- .-...|..-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhH
Confidence 445666666666666666665542 33666666666666666666666555554444210 1122333334444445555
Q ss_pred HHHHHHHHHHHhCCCCC
Q 003020 721 RQAEEIFEIMKKKGDAN 737 (856)
Q Consensus 721 ~~A~~~~~~~~~~~~~~ 737 (856)
.+|.+-++..++..|.+
T Consensus 182 ~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHhHHHHHhhCccc
Confidence 55555555555555443
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.02 E-value=0.11 Score=33.35 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 775 SYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 775 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+|..|+.+|.+.|+|++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467888888888888888888888654
No 279
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.91 E-value=2.5 Score=38.98 Aligned_cols=92 Identities=7% Similarity=0.087 Sum_probs=65.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVD 786 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 786 (856)
+...+...+++++|+..++..+....+. ..+-..|.+.....|.+|+|+..++...+.+. .+.....-++++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 3455677888888888888777543211 12334567778888889999888887766432 334456678888899
Q ss_pred CCHHHHHHHHHHHHHcC
Q 003020 787 GRFKDVIGTFKDMVNAA 803 (856)
Q Consensus 787 g~~~~A~~~~~~~~~~g 803 (856)
|+.++|...|++.++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999888864
No 280
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.83 E-value=27 Score=44.92 Aligned_cols=149 Identities=13% Similarity=-0.024 Sum_probs=93.0
Q ss_pred HHHHHHccCChHHHHHHHHHH----HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH
Q 003020 397 LIFLHAKNDKISMASRYFWKM----KEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYI 472 (856)
Q Consensus 397 li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 472 (856)
+..+-.+++.+.+|...++.- .+.. ....-|-.+-..|..-+++|...-+...-.. ++ .+..-+....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~-sl~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DP-SLYQQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Cc-cHHHHHHHHH
Confidence 334556778888888888773 2110 1122333344478888888877666553111 11 2233445566
Q ss_pred HcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHH-HHHHHccCCHHHHHHH
Q 003020 473 EAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVM-VKAYGMGRNYDKACNL 551 (856)
Q Consensus 473 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~ 551 (856)
..|++..|...|+++...+|.....+..........|.+...+...+.......+...-|+.+ +.+--+.++++.....
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 778899999999999888888888888887777778888887776666555555555555544 3333556666655554
Q ss_pred HH
Q 003020 552 FD 553 (856)
Q Consensus 552 ~~ 553 (856)
..
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 44
No 281
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.65 E-value=4 Score=35.96 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003020 717 RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGR 788 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 788 (856)
.++.+++..++..+.-..|..+..-..-++.+...|+|++|+++++++.+.++. .+..-..++.++...|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~-~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA-PPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC-chHHHHHHHHHHHhcCC
Confidence 556666666666666655555555555555566666666666666666655443 23333333334444443
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.61 E-value=5.2 Score=35.96 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=26.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Q 003020 681 KVGYLKEAQETYKLLRSLEASPDVYT-SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEF 739 (856)
Q Consensus 681 ~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 739 (856)
+.++.+++..+++.+.-.. |.... -..-+..+...|++.+|+.+++++....+..+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred ccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 4455555555555555422 22211 111223344555566666666555544443333
No 283
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.60 E-value=17 Score=41.85 Aligned_cols=188 Identities=10% Similarity=0.090 Sum_probs=110.5
Q ss_pred HHHHHHHHhHHcCCCCCCH--HHHHHHHHHHH-ccCCHHHHHHHHHHHHhCCCCcChh-----hHHHHHHHHHcCCCHHH
Q 003020 176 RALEIFEWFKRQECHELNV--IHYNIMLRTLG-KARKWSYVQSLWDEMSVKGIVPINS-----TYGTLIDVCSKGGLKEE 247 (856)
Q Consensus 176 ~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~ 247 (856)
.|+..++.+.+....+|.. .++-.++..+. ...++++|+..+++.....-.++.. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 4788888777654445544 56667777777 5688999999999876543222222 2345566777777666
Q ss_pred HHHHHHHHHhCC----CCccHHHHHHH-HHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHh
Q 003020 248 AVCWLERMNEGG----MEPDEVTMGIV-VQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSY 322 (856)
Q Consensus 248 A~~~~~~~~~~~----~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (856)
|...+++.++.- ..+-...+..+ +..+...+++..|.+.++.+..... ....+...
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~-------------------~~~d~~~~ 178 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN-------------------QRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh-------------------hcCCHHHH
Confidence 999988887642 12222333333 2233334788889998887753210 01122234
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHHHCCC---------CCCHHhHHHHHHHHh--cCCCHHHHHHHHHHHH
Q 003020 323 TYNTLIDTYG--KAGQLKEASETFAQMLREGI---------VPTTVTFNTMIHIYG--NNDQLAEVDSLIKKME 383 (856)
Q Consensus 323 ~~~~li~~~~--~~g~~~~A~~~~~~~~~~g~---------~p~~~~~~~ll~~~~--~~g~~~~A~~~~~~~~ 383 (856)
.+-.++.+.. +.+..+++.+.++++..... .|-..+|..+++.++ ..|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444433 45667778777777643211 234556777766554 5677777766666554
No 284
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.57 E-value=6.5 Score=41.99 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH
Q 003020 740 TYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF--TFKSLGA 816 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~ 816 (856)
+-..|+.++.+.|+.++|++.++++++..|.. ......+|+.+|...+++.++..++.+--+.. -|... +|+..+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALL 339 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALL 339 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHH
Confidence 44568888899999999999999999876553 34688999999999999999999999965433 34443 4766554
Q ss_pred HHHHcC
Q 003020 817 VLMKCG 822 (856)
Q Consensus 817 ~~~~~G 822 (856)
.....|
T Consensus 340 kaRav~ 345 (539)
T PF04184_consen 340 KARAVG 345 (539)
T ss_pred HHHhhc
Confidence 443333
No 285
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.54 E-value=0.2 Score=31.58 Aligned_cols=32 Identities=22% Similarity=0.115 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.+|..++.+|...|++++|+..++++++..|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46888889999999999999999999887654
No 286
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.52 E-value=0.21 Score=31.42 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003020 741 YAMMLIMYKRNGRFEEATRIAKQMRESG 768 (856)
Q Consensus 741 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 768 (856)
|..++.++...|++++|++.++++++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4444444444444444444444444443
No 287
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.50 E-value=1.7 Score=37.64 Aligned_cols=48 Identities=6% Similarity=0.058 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 003020 666 PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS-LEASPDVYTSNCMIDL 713 (856)
Q Consensus 666 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~ 713 (856)
.|+..+..+++.+|+..|++..|+++.+...+ .+++-+...|..|+.-
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34555555555555555555555555554444 3344444455555443
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.50 E-value=0.074 Score=34.25 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 740 TYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
+|..|+.+|.+.|++++|+++|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886543
No 289
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.35 E-value=0.18 Score=31.75 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003020 773 LLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD 807 (856)
Q Consensus 773 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 807 (856)
+..|..++.+|...|++++|++.|++.++. .|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l--~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL--DPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CcC
Confidence 357889999999999999999999999984 554
No 290
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.24 E-value=5.1 Score=35.70 Aligned_cols=35 Identities=9% Similarity=-0.033 Sum_probs=16.4
Q ss_pred cCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcc
Q 003020 508 RGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMG 542 (856)
Q Consensus 508 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 542 (856)
.+........++.+...++.++...+.++..|++.
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 34444444444444444334445555555555543
No 291
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.15 E-value=18 Score=40.89 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHhCC
Q 003020 543 RNYDKACNLFDSMTSHG 559 (856)
Q Consensus 543 g~~~~A~~~~~~m~~~~ 559 (856)
.+.+.|..++++.-+.|
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 34555555555555554
No 292
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.13 E-value=6.4 Score=35.53 Aligned_cols=124 Identities=14% Similarity=0.137 Sum_probs=65.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHHcCC
Q 003020 644 FADVGNVKQAQSYFDAMESAGLPPNAV-IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSN---CMIDLYSERSM 719 (856)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~ 719 (856)
+.+.++.++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-..--. .-.-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 355666777777777777665432221 11222334456677777777777665533333322100 11123345666
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 720 VRQAEEIFEIMKKKG-DANEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
|++.....+.+...+ |.-...-..|+.+-.+.|++.+|.+.|+++...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666666655554333 223334455666666666666666666666553
No 293
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.04 E-value=1.6 Score=37.91 Aligned_cols=27 Identities=4% Similarity=-0.065 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIM 730 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 730 (856)
..++..++.++++.|+.+....++++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~ 28 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSV 28 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 445666666677777776666666655
No 294
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.99 E-value=7 Score=44.78 Aligned_cols=68 Identities=6% Similarity=0.041 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCC-------HHHHHHHHHHHHhCCCCccH
Q 003020 195 IHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGL-------KEEAVCWLERMNEGGMEPDE 264 (856)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~ 264 (856)
.+| .+|-.+.|+|.+++|.++..+... ........+...+..|....+ -+....-|++..+.....|+
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 345 466677888888888888844332 233355567777777765432 23455556666655442244
No 295
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.88 E-value=0.51 Score=46.92 Aligned_cols=95 Identities=18% Similarity=0.054 Sum_probs=81.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRSLEASP-DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG 752 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 752 (856)
--++-|.++|++++|+..|..... ..| +.+++..-..+|.+...+..|+.-.+.+...+..-..+|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 347789999999999999988776 445 77888888889999999999999999888877666778888888888889
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 003020 753 RFEEATRIAKQMRESGLI 770 (856)
Q Consensus 753 ~~~~A~~~~~~~~~~~~~ 770 (856)
+..+|.+-++.++++.|.
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 999999999999998776
No 296
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=22 Score=40.04 Aligned_cols=111 Identities=13% Similarity=0.123 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYS 715 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 715 (856)
+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.++...+++++-+++-+.... +.-|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHH
Confidence 33444455666777777777665543 46777777777888888888776665444322 234555677788
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003020 716 ERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQM 764 (856)
Q Consensus 716 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 764 (856)
+.|+.++|..++.+.... . -...+|.+.|++.+|.+..-+-
T Consensus 756 ~~~n~~EA~KYiprv~~l----~----ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL----Q----EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hcccHHHHhhhhhccCCh----H----HHHHHHHHhccHHHHHHHHHHh
Confidence 888888888887766532 1 3566777888888887765443
No 297
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.44 E-value=25 Score=40.59 Aligned_cols=193 Identities=15% Similarity=0.124 Sum_probs=102.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHH-HHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 003020 610 MKLGQLEMAEEVYKDMIRFNVEPDV-------VVYGVLINA-FADVGNVKQAQSYFDAMESA----GLPPNAVIYNSLIK 677 (856)
Q Consensus 610 ~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~ 677 (856)
....++++|..+..++...-..|+. ..|+.+-.. ....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3456777777777776543222211 234433222 23467888888887777553 12244566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHH--HHHHHHcCCH--HHHHHHHHHHHhCC----CCCH---HHHHH
Q 003020 678 LYTKVGYLKEAQETYKLLRSLEASPDVYT---SNCM--IDLYSERSMV--RQAEEIFEIMKKKG----DANE---FTYAM 743 (856)
Q Consensus 678 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l--~~~~~~~g~~--~~A~~~~~~~~~~~----~~~~---~~~~~ 743 (856)
+..-.|++++|..+.+...+..-.-++.. |..+ ...+..+|+. ++.+..+....... +... .+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 78888899988888776655322233332 2222 2335566733 33333343333221 2222 23344
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 744 MLIMYKR-NGRFEEATRIAKQMRESGLISDLLSY--NNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 744 l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
+.+++.+ .+...+|..-++-.....+.|-.... ..++.++...|+.++|.....++...
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4444443 12222333333333333344322222 36788888899999998888888763
No 298
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.18 E-value=15 Score=37.39 Aligned_cols=222 Identities=16% Similarity=0.155 Sum_probs=117.4
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHhcC-CHHHHHHHHHHHHHC--------CCCCCH----
Q 003020 611 KLGQLEMAEEVYKDMIRFN--VEPDV------VVYGVLINAFADVG-NVKQAQSYFDAMESA--------GLPPNA---- 669 (856)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~~~p~~---- 669 (856)
+.|+.+.|..++.++.... ..|+. ..|+. +......+ ++++|..++++..+. ...|+.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4555666666665554321 12221 12222 22233344 676666666555332 112332
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003020 670 -VIYNSLIKLYTKVGYLK---EAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMML 745 (856)
Q Consensus 670 -~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 745 (856)
.++..++.+|...+..+ +|.++.+.+.... ...+..+..-+..+.+.++.+++.+.+.+|...-......+...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 45667777777776654 4555555554422 122344445566666688899999999999887643444444444
Q ss_pred HHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHH--hcCC------HHHHHHHHHHHHH-cCCCCCHHHH
Q 003020 746 IMYK--RNGRFEEATRIAKQMRESGLISDLLSYN---NVLGLYA--VDGR------FKDVIGTFKDMVN-AAIQPDDFTF 811 (856)
Q Consensus 746 ~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~--~~g~------~~~A~~~~~~~~~-~g~~p~~~~~ 811 (856)
..+. .......|...+..++...+.|....|. .+...+. ..++ .+....+++...+ .+-+.+..+-
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 4442 2233456777777777655554443121 1112222 2222 3444444553333 3445567788
Q ss_pred HHHHHHHHHcCHHHHHhhcchhh
Q 003020 812 KSLGAVLMKCGLELTRKKNAQSG 834 (856)
Q Consensus 812 ~~l~~~~~~~G~~~~~~~~~~~~ 834 (856)
.+++..+++.|-.......+.-.
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A 265 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEA 265 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHH
Confidence 89999999999555554444444
No 299
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.02 E-value=2.5 Score=45.72 Aligned_cols=130 Identities=11% Similarity=0.126 Sum_probs=94.7
Q ss_pred hHHHhhccccccHHHHhhHhhhhcChhHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003020 136 PSMLQALDTVKDLDEALKPWAENLSNKERSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQS 215 (856)
Q Consensus 136 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 215 (856)
+.++.-+..+|..++||+. ..+++..-.+.-+.|+++.|.++...+. +..-|..|..+....|++..|.+
T Consensus 618 t~va~Fle~~g~~e~AL~~---s~D~d~rFelal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~E 687 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALEL---STDPDQRFELALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASE 687 (794)
T ss_pred hhHHhHhhhccchHhhhhc---CCChhhhhhhhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHH
Confidence 3566667778888888876 4456566666677888888888776553 46779999999999999999999
Q ss_pred HHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003020 216 LWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKW 290 (856)
Q Consensus 216 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 290 (856)
+|.+... |..|+-.+...|+.+.-..+-....+.|.. |....+|...|+++++.+++..-
T Consensus 688 C~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 688 CFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 9977543 446666777778777666666666665532 33345677789999999988654
No 300
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.84 E-value=34 Score=40.85 Aligned_cols=127 Identities=21% Similarity=0.245 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCHHHH
Q 003020 648 GNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVY----TSNCMIDLYSERSMVRQA 723 (856)
Q Consensus 648 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A 723 (856)
++++.|+..+.++-. ..|.-..+.-.+.|.+.+|+.+|. |+.. .|....+-+.+.+.+++|
T Consensus 894 ~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECGE-------TYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcCc-------cccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHH
Confidence 455666555544431 122333344456666666666543 3322 233333444455666666
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 724 EEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLL--SYNNVLGLYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 800 (856)
.-+|+..-+. .--+.+|..+|+|.+|..+..++..-. |.. .-..|..-+..++++-+|-++..+..
T Consensus 959 al~Ye~~Gkl--------ekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGKL--------EKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccH--------HHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 6666554321 123445666666776666666554311 211 11445555555666655555555443
No 301
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.33 E-value=2.7 Score=40.99 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 759 RIAKQMRESGLISDLLSYNNVLGLYAVD----------------GRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 759 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
..++.|.+.|+.-|..+|..|++++-+. .+-+-+++++++|...|+.||..+-..|++++++.|
T Consensus 93 ~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 93 TALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 3344455555555555555555443221 123668999999999999999999999999999999
No 302
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.27 E-value=13 Score=34.98 Aligned_cols=186 Identities=18% Similarity=0.114 Sum_probs=105.7
Q ss_pred HHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChH
Q 003020 502 IDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPH 581 (856)
Q Consensus 502 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 581 (856)
+..|-..|-..-|+--|.......|.-+.+||-++--+...|+++.|.+.|+...+....-+ .+...-.-++.-.|+++
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYK 150 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchH
Confidence 44566677777788888888888888889999999888999999999999999888643322 22222222344467888
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHH-HhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 582 MAKRYLRKMQEAGLVSDCIPYCAVISSY-MKLGQLEMAEEVY-KDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDA 659 (856)
Q Consensus 582 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (856)
.|.+-+...-+.. +.|+ |.++--.. ...-++.+|..-+ ++.. ..|..-|...|-.|.- |+.. ...++++
T Consensus 151 LAq~d~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yL-gkiS-~e~l~~~ 221 (297)
T COG4785 151 LAQDDLLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYL-GKIS-EETLMER 221 (297)
T ss_pred hhHHHHHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHH-hhcc-HHHHHHH
Confidence 8877666655543 2222 22221111 1223555655433 3333 2344455444433322 1111 1122333
Q ss_pred HHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003020 660 MESAGLPPN-------AVIYNSLIKLYTKVGYLKEAQETYKLLRSL 698 (856)
Q Consensus 660 ~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 698 (856)
+... -..+ ..||--+++-+...|+.++|..+|+-....
T Consensus 222 ~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 222 LKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3221 1111 245666777777777777777777766653
No 303
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.25 E-value=11 Score=34.09 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=71.4
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCChHh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHHhcCCH
Q 003020 575 AGADLPHMAKRYLRKMQEAGLVSDCIP-YCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVV-VYGVL--INAFADVGNV 650 (856)
Q Consensus 575 ~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~ 650 (856)
.+.+..++|+.-|..+.+.|...-+.. ...........|+...|+..|.++-.....|-+. -...+ .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 445566666666666666554332221 1222334556677777888887776544333322 11111 1234567777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 651 KQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 651 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
++.....+.+...+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77777777766555444445556666666777888888887777665
No 304
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.15 E-value=12 Score=34.74 Aligned_cols=118 Identities=11% Similarity=0.050 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 003020 652 QAQSYFDAMESAGLPPNAVIYNS--LIKLYTKVGYLKEAQETYKLLRSLEASPD--VYTSNCMIDLYSERSMVRQAEEIF 727 (856)
Q Consensus 652 ~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 727 (856)
+.....+++...+......++.. +...+...|++++|+.-++.........+ ...--.|.+.....|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44455555555421222223332 34567788999999998887765321111 122234566778889999999998
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 728 EIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 728 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
+.....+ -.......-++++...|+-++|..-|++.++.+..
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 7765431 12233455678899999999999999999998744
No 305
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=30 Score=38.90 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=31.7
Q ss_pred CCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003020 350 EGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLH 401 (856)
Q Consensus 350 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 401 (856)
....|| |..+.++|.-..+.+.+.++++++.+.. ....+|..-.+.+
T Consensus 207 ~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e~--~~llayQIAFDL~ 253 (929)
T KOG2062|consen 207 KLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKED--DLLLAYQIAFDLY 253 (929)
T ss_pred cCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhcc--hhhhHHHHHHHHh
Confidence 345566 5667788888999999999999998632 2334454444444
No 306
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=91.04 E-value=20 Score=36.72 Aligned_cols=155 Identities=16% Similarity=0.140 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----C-
Q 003020 649 NVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK----VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSER-----S- 718 (856)
Q Consensus 649 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g- 718 (856)
+..+|..+|..+.+.|. ......|...|.. ..+..+|..+|+++.+.|..+-......+...|... -
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 35556666665555442 2222334444433 236666777776666655433222233333333332 1
Q ss_pred -CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------
Q 003020 719 -MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDG------ 787 (856)
Q Consensus 719 -~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------ 787 (856)
+...|...+.++...+ ++.....++..|.. ..+.++|...|+++.+.|. ......++ .+...|
T Consensus 169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~ 242 (292)
T COG0790 169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKA 242 (292)
T ss_pred HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhh
Confidence 2236777777777665 55556666666543 3378888888888888874 45555555 555555
Q ss_pred ---------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 788 ---------RFKDVIGTFKDMVNAAIQPDDFTFK 812 (856)
Q Consensus 788 ---------~~~~A~~~~~~~~~~g~~p~~~~~~ 812 (856)
+...|...+......|.........
T Consensus 243 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 243 AFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred hhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 5666666666666655444444333
No 307
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.91 E-value=1.8 Score=42.09 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----------------ChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 003020 370 DQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKND----------------KISMASRYFWKMKEANLEPDIVSYRTLL 433 (856)
Q Consensus 370 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~~~~~~~~~~~~ll 433 (856)
+.++-....++.|.+.|+..|..+|+.|+..+=+.. +-+-+++++++|...|+.||-.+-..|+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 344444444445555555555555555554433211 1234566666666666666666666666
Q ss_pred HHHHhcCC
Q 003020 434 YAYSIRRM 441 (856)
Q Consensus 434 ~~~~~~g~ 441 (856)
.++.+.+-
T Consensus 166 n~FGr~~~ 173 (406)
T KOG3941|consen 166 NAFGRWNF 173 (406)
T ss_pred HHhccccc
Confidence 66655554
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.88 E-value=7.3 Score=36.31 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA--VIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
.+..+...|++.|+.++|++.|.++.+....+.. ..+-.++......|++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4445555555666666666666555554322222 3344455555555555555555544443
No 309
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.63 E-value=3.9 Score=38.12 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD--VYTSNCMIDLYSERSMVRQAEEIFEIMKK 732 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 732 (856)
..+..+++.|.+.|+.++|++.|.++.+....+. ...+-.+++.....+++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566777777777777777777777766443333 23455666666667777777766665554
No 310
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.39 E-value=39 Score=38.94 Aligned_cols=170 Identities=12% Similarity=0.017 Sum_probs=102.1
Q ss_pred CcCHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHH-----hHHHHHHHHhcCCCHHHHHHHHHHHHhCC----C
Q 003020 318 SLSSYTYNTLIDTYG-KAGQLKEASETFAQMLREGIVPTTV-----TFNTMIHIYGNNDQLAEVDSLIKKMEELH----C 387 (856)
Q Consensus 318 ~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~-----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~ 387 (856)
...+.++-.+...+. ...++++|...+++.....-.++.. ....++..+.+.+... |...+++.++.- .
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence 334567777777777 6789999999999875543233322 2345567777776666 888888876531 1
Q ss_pred CCCHHHHHHH-HHHHHccCChHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHHhcCCC----
Q 003020 388 PPDTRTYNIL-IFLHAKNDKISMASRYFWKMKEAN---LEPDIVSYRTLLYAYS--IRRMVCEAEELISEMDGGGL---- 457 (856)
Q Consensus 388 ~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~~---- 457 (856)
.+-...+.-+ +..+...+++..|.+.++.+...- ..|-...+-.++.+.. +.+..+++++.++++.....
T Consensus 135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~ 214 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQL 214 (608)
T ss_pred hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhccc
Confidence 1222333333 333434489999999998876421 1233444444444433 55667777777777633211
Q ss_pred -----CCCHhhHHHHHHHHH--HcCChHHHHHHHHHHH
Q 003020 458 -----EIDEYTQSALTRMYI--EAGMLEKSWLWFRRFH 488 (856)
Q Consensus 458 -----~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 488 (856)
.|-..++..++..++ ..|+++.+...++++.
T Consensus 215 ~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 215 DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223445666665554 4677777777766654
No 311
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.12 E-value=3 Score=38.10 Aligned_cols=109 Identities=13% Similarity=0.069 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHhhc----------CCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCC---
Q 003020 478 EKSWLWFRRFHLAGDMSSEGYSANIDGYGER----------GHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRN--- 544 (856)
Q Consensus 478 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 544 (856)
+.|++.++.....+|.+.+.++..+.++... ..+++|+.-|+.+...+|....++..++.+|...+.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 3344444444444555555444443333222 123445555555555556556666666665544321
Q ss_pred --------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 003020 545 --------YDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAG 594 (856)
Q Consensus 545 --------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 594 (856)
+++|...|++... ..|+..+|+.-+.... +|-+++.++.+++
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 3455555555544 3577777777666543 3556666665554
No 312
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.90 E-value=20 Score=37.33 Aligned_cols=136 Identities=5% Similarity=0.017 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 003020 686 KEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR---NGRFEEATRIAK 762 (856)
Q Consensus 686 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 762 (856)
+.-+.+|+++++.+. .+......++..+.+.-+.++..+.++++....|.+...|...+..... .-.++....+|.
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 455667777776532 4455666777777777777888888888888777788877777666544 224666666666
Q ss_pred HHHHc------CC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH------HHHHHHHHH
Q 003020 763 QMRES------GL------ISD-----LLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAI-QPDDF------TFKSLGAVL 818 (856)
Q Consensus 763 ~~~~~------~~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~------~~~~l~~~~ 818 (856)
+.+.. +. .++ ...+..+...+...|-.+.|+.+++-+++..+ .|+.. .....+..|
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe~F 206 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSSSSFSERLESFEEF 206 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence 66532 11 011 12334445556788999999999999998654 34432 223455566
Q ss_pred HHcC
Q 003020 819 MKCG 822 (856)
Q Consensus 819 ~~~G 822 (856)
..+|
T Consensus 207 WeS~ 210 (321)
T PF08424_consen 207 WESE 210 (321)
T ss_pred hCcC
Confidence 6665
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.60 E-value=0.8 Score=30.37 Aligned_cols=29 Identities=17% Similarity=0.488 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 773 LLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 773 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
..+++.++.+|...|++++|..+++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788899999999999999999998876
No 314
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.42 E-value=34 Score=36.77 Aligned_cols=242 Identities=12% Similarity=0.140 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHcC-C-CCChHhHHHHHHHHHhcCCHHH
Q 003020 546 DKACNLFDSMTSHGAVPDKCSYNSLIQILAGAD------LPHMAKRYLRKMQEAG-L-VSDCIPYCAVISSYMKLGQLEM 617 (856)
Q Consensus 546 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~ 617 (856)
+....+|++..+. .|+...+...|..|...- ....-..+++...+.+ . +.....|..+.-.++......+
T Consensus 299 s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 3344666666553 345555666666655422 3333444555544432 1 2233446666555555544333
Q ss_pred -HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHH--HH
Q 003020 618 -AEEVYKDMIRFNVEPDVVVYGVLINAFADVG-NVKQA-QSYFDAMESAGLPPNAVIYNSLIKLYTKVGY-LKEAQ--ET 691 (856)
Q Consensus 618 -A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A-~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~--~~ 691 (856)
|+.+..+. +..+...|..-+....+.. +.+-- ..+|......-..+....|+... .|+ ..... .+
T Consensus 377 ~a~~l~~e~----f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~I 447 (568)
T KOG2396|consen 377 VAVKLTTEL----FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLI 447 (568)
T ss_pred HHHHhhHHH----hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHH
Confidence 33333233 3456666766655555332 21111 12222333221122333344333 222 22221 12
Q ss_pred HHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHc-
Q 003020 692 YKLLRSLEASPDVYT-SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR--NGRFEEATRIAKQMRES- 767 (856)
Q Consensus 692 ~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~- 767 (856)
+...... ..|+..+ -+.+++.+.+.|-+.+|...+.++....|++...+..++..-.. .-+..-+.+.|+.+...
T Consensus 448 i~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 448 ISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF 526 (568)
T ss_pred HHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh
Confidence 2333332 2355554 35677888889999999999999999989998888887765332 22377788899888765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 768 GLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 768 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
| .|+..|......-...|+.+-+-.++.++.+
T Consensus 527 g--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 527 G--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred C--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 5 4888898888777789999998888888776
No 315
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.38 E-value=7 Score=37.36 Aligned_cols=104 Identities=8% Similarity=-0.114 Sum_probs=76.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASPDVY-TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFE 755 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 755 (856)
+-|....+++.|+..|.+.+. +.|+.. -|..-+.++.+..+++.+..--.++++..|........++.++.....++
T Consensus 18 nk~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 345666788888888877766 446664 44566667778888888888888888887777778888888888888899
Q ss_pred HHHHHHHHHHHc----CCCCCHHHHHHHHHH
Q 003020 756 EATRIAKQMRES----GLISDLLSYNNVLGL 782 (856)
Q Consensus 756 ~A~~~~~~~~~~----~~~p~~~~~~~l~~~ 782 (856)
+|+..++++... .+.+....+..|..+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 999888888543 233344566666554
No 316
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.05 E-value=33 Score=36.21 Aligned_cols=65 Identities=15% Similarity=0.080 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 633 DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPP---NAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 633 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
...+|..++..+.+.|.++.|...+..+...+..+ .+.....-.+..-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777777777888888887777776543111 223333445556667777777777766655
No 317
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.90 E-value=34 Score=36.13 Aligned_cols=117 Identities=12% Similarity=-0.007 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-C-C-----
Q 003020 667 PNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASP---DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG-D-A----- 736 (856)
Q Consensus 667 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~-~----- 736 (856)
....+|..+...+.+.|.++.|...+..+...+..+ .+.....-+......|+..+|+..++...... . .
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 445678889999999999999999999887743211 23333345667778899999999988777621 0 0
Q ss_pred --------------------C-------HHHHHHHHHHHHHc------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 737 --------------------N-------EFTYAMMLIMYKRN------GRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 737 --------------------~-------~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
+ ..++..++.-+... +..+++.+.|+++.+..+. ....|..++..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~k~~~~~a~~~ 302 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-WEKAWHSWALFN 302 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh-HHHHHHHHHHHH
Confidence 0 11233344444445 7788888888888887765 556777666655
Q ss_pred H
Q 003020 784 A 784 (856)
Q Consensus 784 ~ 784 (856)
.
T Consensus 303 ~ 303 (352)
T PF02259_consen 303 D 303 (352)
T ss_pred H
Confidence 4
No 318
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.68 E-value=31 Score=35.31 Aligned_cols=147 Identities=13% Similarity=0.324 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCC--
Q 003020 651 KQAQSYFDAMESAGLPPNAVIYNSLIKLYTK--V----GYLKEAQETYKLLRSLEA---SPDVYTSNCMIDLYSERSM-- 719 (856)
Q Consensus 651 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~-- 719 (856)
++.+.+++.|.+.|+.-+..+|-+..-.... . ....+|..+|+.|.+..+ .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455667777777777666555443322222 1 234567788888887432 2344444444332 2222
Q ss_pred --HHHHHHHHHHHHhCC--CCCH-HHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 720 --VRQAEEIFEIMKKKG--DANE-FTYAMMLIMYKRNGR--FEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 720 --~~~A~~~~~~~~~~~--~~~~-~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 792 (856)
.+.++..|+.+.+.+ ..|. .....++..+..... ...+.++++.+.+.+.++....|..+|-.-.-.+..++.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 355667777777755 3343 333333333322222 457788888888888886666666555433333333244
Q ss_pred HHHHHHH
Q 003020 793 IGTFKDM 799 (856)
Q Consensus 793 ~~~~~~~ 799 (856)
..-+.++
T Consensus 237 ~~~i~ev 243 (297)
T PF13170_consen 237 VEEIKEV 243 (297)
T ss_pred HHHHHHH
Confidence 4444433
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.45 E-value=0.77 Score=28.83 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 775 SYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 775 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+|..++.+|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555555555555555555555544
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.35 E-value=52 Score=37.51 Aligned_cols=172 Identities=15% Similarity=0.103 Sum_probs=98.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcC
Q 003020 163 ERSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKG 242 (856)
Q Consensus 163 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 242 (856)
+.-..+-+.+.|++|+.+-+......+-......+..+|..+.-.|++++|-...-.|... +..-|.-.+..+...
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 3444566678899999888766543211113467889999999999999999999888875 667787777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHh
Q 003020 243 GLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSY 322 (856)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (856)
++...-..+ +.......++..|..++..+.. .+...=.++...+... +... .......+.....+. .+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~--Lys~---l~iisa~~~q~~q~S-e~~~ 506 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGH--LYSV---LTIISATEPQIKQNS-ESTA 506 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChh--hhhh---hHHHhhcchHHHhhc-cchh
Confidence 765443222 2222222456677777777766 3333322333222210 0000 000000000001111 1123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 323 TYNTLIDTYGKAGQLKEASETFAQML 348 (856)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~~~ 348 (856)
.-..|+..|...+++..|+..+-..+
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhcc
Confidence 34447888888888888888887764
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.19 E-value=18 Score=32.05 Aligned_cols=51 Identities=12% Similarity=-0.151 Sum_probs=25.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 003020 474 AGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEG 524 (856)
Q Consensus 474 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 524 (856)
.++.+++..+++.+....|...+.-.--+-.+...|++++|.++|+...+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555555544544444444444444555555555555544443
No 322
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=88.18 E-value=0.84 Score=48.06 Aligned_cols=107 Identities=12% Similarity=0.016 Sum_probs=78.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 713 LYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 792 (856)
.....+.++.|+.++.++++..|.....|..-..++.+.+++..|+.=+.++++..|. -...|.--+.++.+.+++.+|
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHHHH
Confidence 3445567778888888888777777766666667777888888888888888877755 456676677777777778888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 793 IGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 793 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
+..|+.... +.|+..-....+.-+.+..
T Consensus 92 ~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 92 LLDLEKVKK--LAPNDPDATRKIDECNKIV 119 (476)
T ss_pred HHHHHHhhh--cCcCcHHHHHHHHHHHHHH
Confidence 777777666 5777777777777666666
No 323
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.84 E-value=7.2 Score=35.10 Aligned_cols=53 Identities=13% Similarity=-0.114 Sum_probs=27.0
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 003020 472 IEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEG 524 (856)
Q Consensus 472 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 524 (856)
...++.+++..++..+....|...+.-..-+..+..+|++.+|+++|+.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34455555555555555555544444444444455555555555555554443
No 324
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.76 E-value=44 Score=36.02 Aligned_cols=180 Identities=13% Similarity=0.196 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 563 DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLIN 642 (856)
Q Consensus 563 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 642 (856)
|.....+++..+....+..-...+..+|+.-| .+-..|..++.+|... ..+.-..+|+++.+..+. |++.-..+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 34444455555555555555555555555543 3444555566666555 345555666655554322 3333333443
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHH
Q 003020 643 AFADVGNVKQAQSYFDAMESAGLPP--N---AVIYNSLIKLYTKVGYLKEAQETYKLLRS-LEASPDVYTSNCMIDLYSE 716 (856)
Q Consensus 643 ~~~~~g~~~~A~~~~~~~~~~~~~p--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~ 716 (856)
-|-+ ++.+.+..+|.++...-++. + ...|.-+...- ..+.+.-+.+...+.. .|..--.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 55566666666554432210 1 12333333211 2344444555444443 3333333444444455666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003020 717 RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYK 749 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 749 (856)
..++.+|++++..+++.+..|..+-..++.-+.
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 666777777777666666556555555554443
No 325
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.64 E-value=35 Score=36.44 Aligned_cols=119 Identities=13% Similarity=0.071 Sum_probs=86.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC-CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCCC----
Q 003020 713 LYSERSMVRQAEEIFEIMKKKG-DA--------NEFTYAMMLIMYKRNGRFEEATRIAKQMRE-------SGLISD---- 772 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~-~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~---- 772 (856)
.+...|++.+|.+++...--.. +. ....|+.|+..+.+.|.+..+..+|.+++. .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 4556899999999886543222 11 233568899999999999999999988874 344432
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----HHHHHhhcch
Q 003020 773 ------LLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG----LELTRKKNAQ 832 (856)
Q Consensus 773 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G----~~~~~~~~~~ 832 (856)
-...++.+-.|...|++-.|.+.|.+.+.- +.-++-.|-.+..+|..+- .++.+..+.+
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~ 397 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMALQKGLLEEGNSSLSR 397 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHhhhhhhhhccCCccc
Confidence 244567888999999999999999998874 5667788988888887654 5555544444
No 326
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.51 E-value=4.5 Score=43.91 Aligned_cols=131 Identities=14% Similarity=0.057 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003020 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLH 401 (856)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 401 (856)
..-+.+++.+-++|..++|+++ .+|...-. ....+.|+++.|.++..+.. +..-|..|.++.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 4566778888888888888654 23433222 23346789999988877754 677899999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHH
Q 003020 402 AKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSW 481 (856)
Q Consensus 402 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 481 (856)
.+.|++..|.+.|.+... |..|+..+...|+.+.-..+-....+.|.. +....+|...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHH
Confidence 999999999998877653 445666677777766555554444444432 23334555666766665
Q ss_pred HHHH
Q 003020 482 LWFR 485 (856)
Q Consensus 482 ~~~~ 485 (856)
+++.
T Consensus 742 ~lLi 745 (794)
T KOG0276|consen 742 ELLI 745 (794)
T ss_pred HHHH
Confidence 5543
No 327
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.49 E-value=1 Score=27.86 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 776 YNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 776 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+..++.++.+.|++++|.+.|+++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44555666666666666666666655
No 328
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.01 E-value=23 Score=36.22 Aligned_cols=130 Identities=13% Similarity=0.247 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--CC----ChHHHHHHHHHHHHcCCC---CChHhHHHHHHHHHhcCC--
Q 003020 546 DKACNLFDSMTSHGAVPDKCSYNSLIQILAG--AD----LPHMAKRYLRKMQEAGLV---SDCIPYCAVISSYMKLGQ-- 614 (856)
Q Consensus 546 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~-- 614 (856)
++.+.+++.|.+.|++-+..+|-+....... .. ....+..+++.|.+..+- ++-.++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4556778888888888777666553333322 11 233556666666665321 222333333322 1222
Q ss_pred --HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 615 --LEMAEEVYKDMIRFNVEPDV--VVYGVLINAFADVGN--VKQAQSYFDAMESAGLPPNAVIYNSLIK 677 (856)
Q Consensus 615 --~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 677 (856)
.+.+...|+.+.+.|...+- .....++..+..... ..++.++++.+.+.|+++....|..++-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 23445555555554543322 122222221111111 3345555666666665555555554443
No 329
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.26 E-value=10 Score=36.38 Aligned_cols=86 Identities=9% Similarity=-0.043 Sum_probs=70.0
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHH
Q 003020 471 YIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACN 550 (856)
Q Consensus 471 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 550 (856)
|....+++.|+..|.+....+|.....|..-+-++.+..+++.+..-..+..+..+..+.....+..+......+++|+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 33445677777888888888888888888888888888888888888888888877778888888888888888999988
Q ss_pred HHHHHH
Q 003020 551 LFDSMT 556 (856)
Q Consensus 551 ~~~~m~ 556 (856)
.+.+..
T Consensus 100 ~Lqra~ 105 (284)
T KOG4642|consen 100 VLQRAY 105 (284)
T ss_pred HHHHHH
Confidence 888763
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.03 E-value=1.4 Score=27.25 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 740 TYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
++..++.++.+.|++++|.+.|+++++.-|.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3556777888888888888888888877653
No 331
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.00 E-value=1.5 Score=27.45 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
.+|..++..|...|++++|.+.|+++++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4677888888888888888888888887654
No 332
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.59 E-value=22 Score=30.81 Aligned_cols=66 Identities=5% Similarity=-0.071 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 736 ANEFTYAMMLIMYKRNGR---FEEATRIAKQMRE-SGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 736 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
++..+...+++++.+..+ ..+.+.+++.+.+ ..|.-.....+-|+-++.+.|+|++++++.+.+++
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 344445555555555443 3445555555554 22222224445555556666666666666666665
No 333
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.36 E-value=2.9 Score=45.02 Aligned_cols=100 Identities=11% Similarity=-0.031 Sum_probs=51.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
.-.|+...|...+..+.-.......+....|.......|...+|-.++...+......+.++..+++++....+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 34455566666555544321111112223444444455555556666655555544445555566666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHH
Q 003020 760 IAKQMRESGLISDLLSYNNVL 780 (856)
Q Consensus 760 ~~~~~~~~~~~p~~~~~~~l~ 780 (856)
.+++++++.++ ++.+-+.|.
T Consensus 698 ~~~~a~~~~~~-~~~~~~~l~ 717 (886)
T KOG4507|consen 698 AFRQALKLTTK-CPECENSLK 717 (886)
T ss_pred HHHHHHhcCCC-ChhhHHHHH
Confidence 66666666555 555444443
No 334
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.31 E-value=0.56 Score=46.95 Aligned_cols=90 Identities=11% Similarity=-0.008 Sum_probs=49.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003020 717 RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTF 796 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 796 (856)
.|.+++|++.+...+...|+....|..-..++.+.+++..|++=+..++++++. ....|-.-+.+....|+|++|...+
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHHH
Confidence 345555555555555555555555555555555555666666655555555443 3334444444455556666666666
Q ss_pred HHHHHcCCCCC
Q 003020 797 KDMVNAAIQPD 807 (856)
Q Consensus 797 ~~~~~~g~~p~ 807 (856)
....+.++.++
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 55555544443
No 335
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.16 E-value=50 Score=34.36 Aligned_cols=89 Identities=6% Similarity=-0.083 Sum_probs=48.9
Q ss_pred HHHHHhcCCCCchhhHHHHHHHhhcC------------CHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 003020 484 FRRFHLAGDMSSEGYSANIDGYGERG------------HVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNL 551 (856)
Q Consensus 484 ~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 551 (856)
|++....+|.+.++|..++..--..- -.+.-+.+++++.+.++.+...+..++..+.+..+.++..+.
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34444455666666655544322211 123445566666666666667777777777666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHH
Q 003020 552 FDSMTSHGAVPDKCSYNSLIQI 573 (856)
Q Consensus 552 ~~~m~~~~~~p~~~~~~~ll~~ 573 (856)
+++++... +-+...|...+..
T Consensus 88 we~~l~~~-~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 88 WEELLFKN-PGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHC-CCChHHHHHHHHH
Confidence 66666642 1134445444443
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.81 E-value=2.3 Score=28.02 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
.+++.|+..|...|++++|+.+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788889999999999999998888764
No 337
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.37 E-value=33 Score=31.40 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 323 TYNTLIDTYGKAGQLKEASETFAQM 347 (856)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~~ 347 (856)
.+..++..+...|++-+|+.+.+..
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 3455555566666666666665553
No 338
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.01 E-value=48 Score=33.01 Aligned_cols=58 Identities=10% Similarity=0.002 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 708 NCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMR 765 (856)
Q Consensus 708 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 765 (856)
+.....|..+|.+.+|.++.++..+.+|.+...+..|+..+...|+--.|.+.|+++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445667777788888888887777777777777777777877777777777776664
No 339
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.86 E-value=12 Score=37.35 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=62.1
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003020 559 GAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAG---LVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVV 635 (856)
Q Consensus 559 ~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 635 (856)
|......+...++..-....+++.++..+-++.... ..++...+ +.+..+ -.-++++++.++..=++-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 444445555555555555667777777666665431 11111111 112222 2235667777777777778888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESA 663 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (856)
+++.+++.+.+.+++.+|..+.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888887777666544
No 340
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.66 E-value=7.2 Score=36.69 Aligned_cols=76 Identities=9% Similarity=0.007 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 003020 707 SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS--DLLSYNNVLGL 782 (856)
Q Consensus 707 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~ 782 (856)
.+.-+..+.+.+..++|+.+.+.-.+..|.|...-..+...++-.|+|++|..-++-+-+..+.- ....|.+++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34456677788899999999998888889998888899999999999999999998888876652 23567776654
No 341
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.65 E-value=16 Score=29.52 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=18.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 762 KQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 762 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
++.++.+|. |......++..+...|++++|++.+-++++
T Consensus 12 ~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 12 EAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444444 445555555555555555555555555544
No 342
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=83.54 E-value=16 Score=35.20 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCH-------HHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003020 740 TYAMMLIMYKRNGRF-------EEATRIAKQMRESGLIS-----DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQP 806 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 806 (856)
.+..+++.|...|+. ..|.+.|+++.+....| +......++....+.|++++|.+.|.+++..+-.+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 455667777777763 34555555555543222 23566778888888899999999998888854333
No 343
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=83.46 E-value=82 Score=35.94 Aligned_cols=65 Identities=17% Similarity=0.032 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 003020 446 EELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEG 524 (856)
Q Consensus 446 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 524 (856)
....+.++..-+-.+......++..|.+.|-.+.+..+++.+. .-+.+.|++.+|+..|.++...
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~--------------~~~~~~~~~g~AL~~~~ra~d~ 454 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILG--------------QRLLKEGRYGEALSWFIRAGDY 454 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH--------------HHHHHCCCHHHHHHHHHHCCCH
Confidence 4455555554444456666777777888887777777766553 3344556666666666655543
No 344
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.80 E-value=6.6 Score=27.86 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 776 YNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSL 814 (856)
Q Consensus 776 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 814 (856)
...++-++.+.|++++|.+..+.+++ +.|+......|
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 34455566666666666666666666 36665554444
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.34 E-value=11 Score=35.37 Aligned_cols=72 Identities=8% Similarity=0.006 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHH
Q 003020 721 RQAEEIFEIMKKKG-DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESG---LISDLLSYNNVLGLYAVDGRFKDVI 793 (856)
Q Consensus 721 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~ 793 (856)
++|.+.|-.+...+ -.++.....|+.-|. ..+.++|++++.++++.. -.+|+..+..|+..|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 55666666665554 344555555554444 556777777777777652 2356777777777777777777763
No 346
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.19 E-value=1e+02 Score=35.37 Aligned_cols=168 Identities=14% Similarity=0.129 Sum_probs=90.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCc---ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhc
Q 003020 201 LRTLGKARKWSYVQSLWDEMSVKGIVP---INSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKA 277 (856)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 277 (856)
|..+.+.+.+++|..+-+.... ..| ....+...+..+...|++++|-...-+|... +..-|--.+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 4556677888888887765433 333 3346778888888889999998888887653 333333333323222
Q ss_pred CChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003020 278 GEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTV 357 (856)
Q Consensus 278 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 357 (856)
++..... .-.+..+...+...|..++..+.. .+ ..-|.+..+. -+..
T Consensus 437 ~~l~~Ia-------------------------~~lPt~~~rL~p~vYemvLve~L~-~~----~~~F~e~i~~---Wp~~ 483 (846)
T KOG2066|consen 437 DQLTDIA-------------------------PYLPTGPPRLKPLVYEMVLVEFLA-SD----VKGFLELIKE---WPGH 483 (846)
T ss_pred cccchhh-------------------------ccCCCCCcccCchHHHHHHHHHHH-HH----HHHHHHHHHh---CChh
Confidence 2222211 111222334567788888887766 22 2223333321 1222
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003020 358 TFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKE 419 (856)
Q Consensus 358 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 419 (856)
.|..+-..-+-.. -+++- .-+...-..|+..|...++++.|.+++-....
T Consensus 484 Lys~l~iisa~~~-------q~~q~-----Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 484 LYSVLTIISATEP-------QIKQN-----SESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred hhhhhHHHhhcch-------HHHhh-----ccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 3333221111111 11111 11223334488899999999999998877663
No 347
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.14 E-value=2 Score=25.10 Aligned_cols=22 Identities=5% Similarity=-0.019 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 003020 776 YNNVLGLYAVDGRFKDVIGTFK 797 (856)
Q Consensus 776 ~~~l~~~~~~~g~~~~A~~~~~ 797 (856)
...++.++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445555556666666555543
No 348
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.49 E-value=1.1e+02 Score=35.38 Aligned_cols=138 Identities=11% Similarity=0.035 Sum_probs=72.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 003020 331 YGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMA 410 (856)
Q Consensus 331 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 410 (856)
..+.|++..+..+..++...-+ .....|..+..... ....+++...+++.. +.|.....-...+..+.+.+++...
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANP--TLPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHccCHHHH
Confidence 3467888888777776642211 12223333332221 224555555555532 1122233334444556667777766
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChH
Q 003020 411 SRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLE 478 (856)
Q Consensus 411 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 478 (856)
.+.+.. .+.+...-.....+....|+.++|......+=..|.. .+.....++..+.+.|.+.
T Consensus 119 ~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 119 LAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCC
Confidence 653211 1345555566677788888888887777766444422 3445555666665555443
No 349
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.27 E-value=30 Score=33.39 Aligned_cols=99 Identities=14% Similarity=-0.027 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh------CCCCCCHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003020 672 YNSLIKLYTKVGYLKEAQETYKLLRS------LEASPDVY-----------TSNCMIDLYSERSMVRQAEEIFEIMKKKG 734 (856)
Q Consensus 672 ~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~p~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 734 (856)
...-++-+.+.|++.+|...|+.++- ..-+|... .+..+-.++...|++-++++...+++...
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 33344455667777777766654321 11122211 23334456667889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 735 DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 735 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
|.|..+|..-+.+....=+.++|..-+.++++.+|.
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 999999999999998888999999999999998655
No 350
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=81.24 E-value=68 Score=32.81 Aligned_cols=148 Identities=16% Similarity=0.075 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----C-
Q 003020 614 QLEMAEEVYKDMIRFNVEPDVVVYGVLINAFAD----VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKV-----G- 683 (856)
Q Consensus 614 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g- 683 (856)
+..+|...|..+.+.| .......|...|.. ..+..+|..+|+++.+.|.++...+...+...|..- -
T Consensus 92 ~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 3555666666554433 22222223333333 225666677777666666433222233344443332 1
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC------
Q 003020 684 -YLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE----RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG------ 752 (856)
Q Consensus 684 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 752 (856)
+...|...|.++...+ +......+...|.. ..+.++|...|.+..+.+. ......+. .+...|
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~ 242 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKA 242 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhh
Confidence 2236777777766654 23333344444432 3477888888888877765 44444455 444444
Q ss_pred ---------CHHHHHHHHHHHHHcCCC
Q 003020 753 ---------RFEEATRIAKQMRESGLI 770 (856)
Q Consensus 753 ---------~~~~A~~~~~~~~~~~~~ 770 (856)
+...|...+......++.
T Consensus 243 ~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 243 AFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred hhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 666677777777766655
No 351
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.16 E-value=12 Score=35.25 Aligned_cols=141 Identities=11% Similarity=0.038 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMMLIM 747 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~ 747 (856)
|.+..++.+.+.+...+|+...+.-.+..+ .|...-..++..++-.|++++|..-++-+-+..|.+ ...|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345566778889999999999877666432 345556678899999999999999998887766543 3455555543
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHH-HHHH-HhcC-CHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Q 003020 748 YKRNGRFEEATRIAKQMRESGLIS-----DLLSYNNV-LGLY-AVDG-RFKDVIGTFKDMVNAAIQP----DDFTFKSLG 815 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l-~~~~-~~~g-~~~~A~~~~~~~~~~g~~p----~~~~~~~l~ 815 (856)
- .+-++...-+..| ++..|... ..+. ++.+ .-+.+..+.+...+.+-.| +.-.+..+.
T Consensus 82 e----------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~~~gg~fawia 151 (273)
T COG4455 82 E----------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGHADGGSFAWIA 151 (273)
T ss_pred H----------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcccCCcchhhhh
Confidence 2 2223333333222 12334332 2222 3333 4444556666666643222 333455555
Q ss_pred HHHHHcC
Q 003020 816 AVLMKCG 822 (856)
Q Consensus 816 ~~~~~~G 822 (856)
..=.+.|
T Consensus 152 DsD~Rlg 158 (273)
T COG4455 152 DSDDRLG 158 (273)
T ss_pred hcccccC
Confidence 5555555
No 352
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=80.79 E-value=88 Score=33.83 Aligned_cols=92 Identities=9% Similarity=-0.066 Sum_probs=67.9
Q ss_pred HHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCC-CHHHHHHHHHHH
Q 003020 177 ALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGG-LKEEAVCWLERM 255 (856)
Q Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 255 (856)
-..+|..+..+ +..|+..|...+..+.+.+.+.+.-.+|.+|+...+. ++..|.........-+ +.+.|+.+|.+.
T Consensus 90 Iv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 90 IVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 34556666555 6779999999999888888899999999999997544 7778887777655544 499999999999
Q ss_pred HhCCCCccHHHHHHHHH
Q 003020 256 NEGGMEPDEVTMGIVVQ 272 (856)
Q Consensus 256 ~~~~~~~~~~~~~~ll~ 272 (856)
++..+. .+..|....+
T Consensus 167 LR~npd-sp~Lw~eyfr 182 (568)
T KOG2396|consen 167 LRFNPD-SPKLWKEYFR 182 (568)
T ss_pred hhcCCC-ChHHHHHHHH
Confidence 887432 3344444333
No 353
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=80.36 E-value=20 Score=28.93 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH
Q 003020 725 EIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-DLLSYNNVLGLYAVDGRFK 790 (856)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 790 (856)
.-++.....+|.|......++..+...|++++|++.+-+++..++.. +...-..++.++...|.-+
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 34455555668888888889999999999999999988888876553 3456666777776666644
No 354
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.35 E-value=20 Score=29.17 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHH
Q 003020 173 SWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWL 252 (856)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 252 (856)
+.++|..+-+|....+. ....+--.-+..+..+|+|++|..+.+.+ +.||...|..+- -.+.|..+.+...+
T Consensus 20 cHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHH
Confidence 68899999999986541 12233333445678899999999988654 578998887764 35778888888888
Q ss_pred HHHHhCC
Q 003020 253 ERMNEGG 259 (856)
Q Consensus 253 ~~~~~~~ 259 (856)
.++-..|
T Consensus 92 ~rla~sg 98 (115)
T TIGR02508 92 NRLAASG 98 (115)
T ss_pred HHHHhCC
Confidence 8887776
No 355
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.95 E-value=23 Score=35.50 Aligned_cols=100 Identities=12% Similarity=0.066 Sum_probs=72.7
Q ss_pred CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003020 594 GLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFN---VEPD--VVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPN 668 (856)
Q Consensus 594 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 668 (856)
|.+....+...++..-....+++.++..+-++...- ..|+ ..+|-.+ + ..-++++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---l-lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---L-LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---H-HccChHHHHHHHhCcchhccccc
Confidence 444455555666666566678888888887776431 1122 2333322 2 33478899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
..++..+++.+.+.+++.+|.++...|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999998877665
No 356
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.92 E-value=12 Score=36.99 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 003020 741 YAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN-----AAIQPDDFT 810 (856)
Q Consensus 741 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~ 810 (856)
++.....|..+|.+.+|.++-++++..+|- +...|-.++..|+..|+--.|.+-|+++.+ .|+.-|...
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 455678899999999999999999999887 889999999999999998888888888754 466655543
No 357
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.37 E-value=62 Score=31.19 Aligned_cols=88 Identities=13% Similarity=0.145 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHh--CCCCCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHhCCCCCHH-HHH------HHHHHHHH
Q 003020 683 GYLKEAQETYKLLRS--LEASPDVYTSNCMID---LYSERSMVRQAEEIFEIMKKKGDANEF-TYA------MMLIMYKR 750 (856)
Q Consensus 683 g~~~~A~~~~~~~~~--~~~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~------~l~~~~~~ 750 (856)
.+++.|+..|+..-+ .+-..+...--+++. .-...+++.+|+.+|+++....-.|.. -|. .-+-++.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 455555555555544 222223223333333 234567888888888887766533332 121 11112222
Q ss_pred cCCHHHHHHHHHHHHHcCCC
Q 003020 751 NGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 751 ~g~~~~A~~~~~~~~~~~~~ 770 (856)
..+.--+...+++..+..|.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPA 227 (288)
T ss_pred cccHHHHHHHHHHHHhcCCc
Confidence 34555566667777776655
No 358
>PRK10941 hypothetical protein; Provisional
Probab=79.14 E-value=16 Score=36.65 Aligned_cols=62 Identities=10% Similarity=-0.056 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.+-.+|.+.++++.|+...+.+....|.++.-+.--+..|.+.|.+..|..-++..++..|.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 34445555666666666666666655666655555555566666666666666666555544
No 359
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.10 E-value=14 Score=29.73 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=18.8
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 692 YKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMK 731 (856)
Q Consensus 692 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 731 (856)
++.+...+..|++....+.+++|.+.+++.-|+++++.+.
T Consensus 30 mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 30 LNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333444444444444555555555555555554444
No 360
>PRK10941 hypothetical protein; Provisional
Probab=78.74 E-value=29 Score=34.84 Aligned_cols=78 Identities=10% Similarity=0.002 Sum_probs=63.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 003020 741 YAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA-AIQPDDFTFKSLGAVLM 819 (856)
Q Consensus 741 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~ 819 (856)
...+-.+|.+.++++.|+++.+.++...|. ++.-+.--+-.|.+.|.+..|..=++..++. .-.|+.......+..+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 456778899999999999999999999998 8888999999999999999999999999874 22344444555544443
No 361
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.68 E-value=1e+02 Score=33.37 Aligned_cols=182 Identities=13% Similarity=0.102 Sum_probs=128.5
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003020 596 VSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSL 675 (856)
Q Consensus 596 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 675 (856)
+.|.....+++..+....+..-...+..+|+..| .+-..|..++.+|... ..+.-..+|+++.+..+ .|.+.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4466667788889988888899999999999864 4778899999999988 66888999999988763 355555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC--CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHH
Q 003020 676 IKLYTKVGYLKEAQETYKLLRSLEAS--PD---VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD--ANEFTYAMMLIMY 748 (856)
Q Consensus 676 ~~~~~~~g~~~~A~~~~~~~~~~~~~--p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~ 748 (856)
...|.+ ++...+..+|.++...-++ .+ ...|..+...- ..+.+....+..++.+... .-...+..+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 666655 8889999999888763221 11 22444444322 3566777777777765542 2233444555667
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003020 749 KRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV 785 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 785 (856)
....++++|+++...+++.+-+ |..+-..++..+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIENLRD 251 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHHHH
Confidence 7888999999999999988765 66666666555443
No 362
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.55 E-value=19 Score=33.83 Aligned_cols=75 Identities=12% Similarity=0.166 Sum_probs=40.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHcCCHHH
Q 003020 681 KVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG----DANEFTYAMMLIMYKRNGRFEE 756 (856)
Q Consensus 681 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 756 (856)
+.|+ ++|.+.|-.+...+.-.++.....|...|. ..+.++++.++.++++.. ..|+..+.+|+..+.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3444 455555555554443344444444443333 455666666666655544 3456666666666666666666
Q ss_pred H
Q 003020 757 A 757 (856)
Q Consensus 757 A 757 (856)
|
T Consensus 197 A 197 (203)
T PF11207_consen 197 A 197 (203)
T ss_pred h
Confidence 5
No 363
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.12 E-value=68 Score=30.94 Aligned_cols=17 Identities=6% Similarity=0.245 Sum_probs=8.7
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003020 646 DVGNVKQAQSYFDAMES 662 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~ 662 (856)
..+++.+|+.+|+++..
T Consensus 166 ~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555544
No 364
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.10 E-value=24 Score=28.73 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=35.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003020 745 LIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTF 811 (856)
Q Consensus 745 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 811 (856)
+..+..+|+|++|..+.+.. +.||...|..+. -.+.|..+.+..-+-+|-..| .|....|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 33456677777777665544 456666665553 356666666666666665554 4544444
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.04 E-value=6.1 Score=30.48 Aligned_cols=47 Identities=6% Similarity=0.020 Sum_probs=27.7
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH
Q 003020 750 RNGRFEEATRIAKQMRESGLISDL--LSYNNVLGLYAVDGRFKDVIGTF 796 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~ 796 (856)
.+++.++|+..|+++++.-..+.- .++-.+..+|+..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777777766554221 23344456667777776665544
No 366
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.85 E-value=3.2 Score=24.22 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 003020 740 TYAMMLIMYKRNGRFEEATRIAK 762 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~~~A~~~~~ 762 (856)
+...++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34556677777777777776664
No 367
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.40 E-value=9.8 Score=41.26 Aligned_cols=102 Identities=12% Similarity=-0.037 Sum_probs=58.9
Q ss_pred CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc-hhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHH
Q 003020 457 LEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSS-EGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVM 535 (856)
Q Consensus 457 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 535 (856)
..|-...++..+--....|+...|...+..+....|... .....++....+.|...+|-..+.+........+.++..+
T Consensus 603 ~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~ 682 (886)
T KOG4507|consen 603 NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSL 682 (886)
T ss_pred CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhc
Confidence 334444444333333445666666666665554444322 3445556666666666666666666665555556666666
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC
Q 003020 536 VKAYGMGRNYDKACNLFDSMTSH 558 (856)
Q Consensus 536 i~~~~~~g~~~~A~~~~~~m~~~ 558 (856)
++++....+.+.|++.|++..+.
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhc
Confidence 66776677777777777666654
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.27 E-value=4 Score=24.32 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 776 YNNVLGLYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 776 ~~~l~~~~~~~g~~~~A~~~~~~~~ 800 (856)
|..++.++...|++++|...+++.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 369
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.94 E-value=2 Score=38.56 Aligned_cols=123 Identities=10% Similarity=0.123 Sum_probs=55.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCh
Q 003020 201 LRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEF 280 (856)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 280 (856)
+..+.+.+........++.+...+...+....+.++..|++.+..+....+++.. +..-...++..|.+.|-+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence 4444445555555555555554443334555555555555555545555444411 112223344444555555
Q ss_pred hHHHHHHHHHhhhcc-cc---CCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCC
Q 003020 281 QKAEEFFKKWSSRES-LR---HGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQ 336 (856)
Q Consensus 281 ~~A~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 336 (856)
+.|.-++.++..... +. ...++..++....+ ..+...|..++..+...+.
T Consensus 87 ~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 87 EEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 555555554432111 00 00111122211111 1245788888887766554
No 370
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.55 E-value=4.6 Score=24.04 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
.+|..++..+...|++++|...+++.++..+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4678899999999999999999999987643
No 371
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=75.89 E-value=44 Score=27.65 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHH
Q 003020 173 SWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWL 252 (856)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 252 (856)
+.++|-.+.+|....+. -...+--..+..+.++|+|++| +..- .....||...|..+- -.+.|..+++...+
T Consensus 21 cH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A---Ll~~-~~~~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA---LLLP-QCHCYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH---HHHH-TTS--GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH---HHhc-ccCCCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 78999999999998762 2233333445678899999999 2222 334667888776654 45889999999999
Q ss_pred HHHHhCC
Q 003020 253 ERMNEGG 259 (856)
Q Consensus 253 ~~~~~~~ 259 (856)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 9887766
No 372
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=74.60 E-value=70 Score=29.33 Aligned_cols=131 Identities=14% Similarity=0.143 Sum_probs=71.1
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 003020 341 SETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEA 420 (856)
Q Consensus 341 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 420 (856)
.+.++.+.+.++.|+...+..+++.+.+.|++.....++.. ++-+|.......+-.+ .+.+..+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----HVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----cccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence 34555666778888888888888888888887765555543 3344443333222111 12233333333333321
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHH
Q 003020 421 NLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFR 485 (856)
Q Consensus 421 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 485 (856)
=...+..++..+...|++-+|+++.+..... +......++.+..+.++...=..+|+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 0113556677788888888888887765322 11222334455555555443333333
No 373
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=73.30 E-value=53 Score=31.73 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCC-------HHHHHHHHHHHHhCC--C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 708 NCMIDLYSERSM-------VRQAEEIFEIMKKKG--D----ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 708 ~~l~~~~~~~g~-------~~~A~~~~~~~~~~~--~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
..+...|...|+ +..|.+.|++..+.. | ........++....+.|++++|.+.|.+++..+-.
T Consensus 122 LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 122 LRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 334444544554 345566666555444 1 12345556777888888888888888888876443
No 374
>PRK09687 putative lyase; Provisional
Probab=72.85 E-value=1.1e+02 Score=30.98 Aligned_cols=234 Identities=11% Similarity=-0.001 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHH
Q 003020 562 PDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQL----EMAEEVYKDMIRFNVEPDVVVY 637 (856)
Q Consensus 562 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~ 637 (856)
+|.......+.++...|..+. ...+..+.. .+|...-...+.++...|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~-~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDV-FRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchH-HHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455555555666666554332 222333333 23555555566666666653 4566666666332 4455555
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 638 GVLINAFADVGNV-----KQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMID 712 (856)
Q Consensus 638 ~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 712 (856)
...+.++...+.. .++...+...... ++..+-...+.++.+.|+ ++++..+-.+.+ .++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 5555555544321 2334444333332 355555566666766665 556666666655 234344444444
Q ss_pred HHHHcC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 713 LYSERS-MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKD 791 (856)
Q Consensus 713 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 791 (856)
+++..+ ....+...+..+.. .++..+-...+.++.+.|+ ..|+..+-+.++.+ + .....+.++...|.. +
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~--D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ--DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc--CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 555442 24456666666663 3466666677777777776 46666666666642 2 234566777777774 6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 792 VIGTFKDMVNAAIQPDDFTFKSLGAVLM 819 (856)
Q Consensus 792 A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 819 (856)
|+..+.++.+. .||...-.....+|.
T Consensus 253 a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 253 LLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 88888887764 456665555554443
No 375
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.30 E-value=47 Score=27.25 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=17.5
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003020 693 KLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKK 733 (856)
Q Consensus 693 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 733 (856)
+.+...+..|++....+.+.+|.+.+++..|+++++.+..+
T Consensus 34 N~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 34 NNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33333344455554455555555555555555555544433
No 376
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.91 E-value=7.1 Score=26.39 Aligned_cols=23 Identities=9% Similarity=0.251 Sum_probs=11.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 003020 779 VLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 779 l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
++.+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555544
No 377
>PRK11619 lytic murein transglycosylase; Provisional
Probab=71.09 E-value=2.1e+02 Score=33.23 Aligned_cols=117 Identities=9% Similarity=-0.033 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHHHHhcCC-CCCCHh--hHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHH
Q 003020 439 RRMVCEAEELISEMDGGG-LEIDEY--TQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAE 515 (856)
Q Consensus 439 ~g~~~~A~~~~~~~~~~~-~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 515 (856)
..+.+.|..++....... ..+... +...+.......+..+++..+++..... ..+.+.....+......++++.+.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~-~~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR-SQSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc-cCCcHHHHHHHHHHHHccCHHHHH
Confidence 445566666666653322 222111 1222222222222244555555543311 122333333344444666666666
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003020 516 RAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMT 556 (856)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 556 (856)
..+..+.........-..=++.++...|+.++|...|+.+.
T Consensus 333 ~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66665544333333333444555555677777777776653
No 378
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.91 E-value=2.3e+02 Score=33.72 Aligned_cols=116 Identities=12% Similarity=0.099 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHhcCCCH--HHHHHHHHHHHhCCCCCCHHHH--
Q 003020 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGIVPT---TVTFNTMIHIYGNNDQL--AEVDSLIKKMEELHCPPDTRTY-- 394 (856)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~ll~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~-- 394 (856)
.-|..|+..|...|+.++|++++.+.....-.-| ...+-.++..+.+.+.. +-+.+.-....+.+.......+
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 3588899999999999999999999876310001 11233344444444433 3344333333322110000000
Q ss_pred ----------HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 003020 395 ----------NILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYS 437 (856)
Q Consensus 395 ----------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 437 (856)
...+-.|......+-++.+++.+....-.++..-.+.++..|+
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 0112334555666677777777765444455555666666554
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.45 E-value=10 Score=25.62 Aligned_cols=26 Identities=31% Similarity=0.189 Sum_probs=17.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCC
Q 003020 234 TLIDVCSKGGLKEEAVCWLERMNEGG 259 (856)
Q Consensus 234 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 259 (856)
.+..+|...|+.+.|++++++.+..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35667777777777777777777544
No 380
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.02 E-value=72 Score=30.95 Aligned_cols=96 Identities=6% Similarity=-0.054 Sum_probs=71.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH-------hCC-CCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003020 710 MIDLYSERSMVRQAEEIFEIMK-------KKG-DANE----------FTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS 771 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 771 (856)
-++-+.+.|++.+|..-|.++. -.. |.++ ..+.+...++...|++-++++.-..++...+.
T Consensus 184 ~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~- 262 (329)
T KOG0545|consen 184 EGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG- 262 (329)
T ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc-
Confidence 3445667777777776665442 222 3332 23445566777889999999999999999888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003020 772 DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDD 808 (856)
Q Consensus 772 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 808 (856)
+..+|..-+.+.+..=+..+|..=|.+.++. .|..
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l--dpsl 297 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL--DPSL 297 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--Chhh
Confidence 8899999999998888899999999999883 5543
No 381
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=69.19 E-value=63 Score=26.56 Aligned_cols=51 Identities=10% Similarity=-0.065 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 003020 444 EAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMS 494 (856)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 494 (856)
+..+-++.+...++.|++.+..+.+++|.+.+++..|..+++.+..+.+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~ 78 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK 78 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh
Confidence 455556666666677777777777777777777777777777666544433
No 382
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=68.47 E-value=1.7e+02 Score=31.34 Aligned_cols=130 Identities=12% Similarity=0.061 Sum_probs=79.7
Q ss_pred cCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 003020 368 NNDQLAEVDSLIKKME-ELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAE 446 (856)
Q Consensus 368 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 446 (856)
..|++-.|-+-+...+ ...-.|+.....+ ..+...|+++.+...+...... +.....+...+++.....|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 4567666654444444 3222344433333 3455678888888777665432 2244556777777788888888888
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHH
Q 003020 447 ELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSAN 501 (856)
Q Consensus 447 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 501 (856)
.+-.-|+...+. ++.......-.....|-+|++...++++...++.....|.+.
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~ 431 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNF 431 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceee
Confidence 888888776655 444444333344556777788777777776666666666554
No 383
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.44 E-value=38 Score=34.34 Aligned_cols=96 Identities=19% Similarity=0.008 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLE-ASPD--VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLI 746 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 746 (856)
..|.-=++-|.+..++..|...|.+-++.. ..|| .+.|+.-..+-.-.|++..|+.-...++...|.+...|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 344445555666666666666665555421 1222 3445555544455566666666666666665666555555555
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 003020 747 MYKRNGRFEEATRIAKQMR 765 (856)
Q Consensus 747 ~~~~~g~~~~A~~~~~~~~ 765 (856)
++....++++|....+..+
T Consensus 162 c~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 5555555666655555543
No 384
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.83 E-value=2.7e+02 Score=32.62 Aligned_cols=37 Identities=8% Similarity=0.147 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLS 775 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 775 (856)
.+....+..+.+.+++..|-.+..++++.++.|+...
T Consensus 1085 lalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1085 LALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence 3555666777788888888888888888877765433
No 385
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.96 E-value=1.5e+02 Score=29.23 Aligned_cols=169 Identities=15% Similarity=0.274 Sum_probs=80.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCC-----------CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH
Q 003020 569 SLIQILAGADLPHMAKRYLRKMQEAGLV-----------SDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFN-VEPDVVV 636 (856)
Q Consensus 569 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 636 (856)
.+...|...+.+....++++++...-.. --..+|..-+.+|..+.+-..-..+|++.+... .-|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 3445555555555555555555432110 012346666777777777777777777766422 2344443
Q ss_pred HHHHHHH-----HHhcCCHHHHHHH-HHHHH---HCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC
Q 003020 637 YGVLINA-----FADVGNVKQAQSY-FDAME---SAGLPPNAVI--YNSLIKLYTKVGYLKEAQETYKLLRSL--EASPD 703 (856)
Q Consensus 637 ~~~l~~~-----~~~~g~~~~A~~~-~~~~~---~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~ 703 (856)
... |+- ..+.|.+++|-.- |+... +.|.|....+ |-.+.+.+.+.|- .-|+.-... .-.|.
T Consensus 230 mGv-IRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPE 303 (440)
T KOG1464|consen 230 MGV-IRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPE 303 (440)
T ss_pred HhH-HHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHH
Confidence 332 222 2356677776543 33333 2343222222 3344444544441 011110111 12345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMM 744 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 744 (856)
....+.|+.+|.. ++..+-..++..-...-..|+++-..+
T Consensus 304 IlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~DpFIReh~ 343 (440)
T KOG1464|consen 304 ILAMTNLVAAYQN-NDIIEFERILKSNRSNIMDDPFIREHI 343 (440)
T ss_pred HHHHHHHHHHHhc-ccHHHHHHHHHhhhccccccHHHHHHH
Confidence 5566777777754 455555555544333334566554443
No 386
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=64.67 E-value=2e+02 Score=30.56 Aligned_cols=89 Identities=10% Similarity=0.092 Sum_probs=59.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHH
Q 003020 711 IDLYSERSMVRQAEEIFEIMKKKGDA-NEFTYAMMLIMYK-RNGRFEEATRIAKQMRESG------LISDLLSYNNVLGL 782 (856)
Q Consensus 711 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~ 782 (856)
+..+.+.|.+..|.++.+-+...+|. |+.....+++.|+ +.++++--+++++...... .-|+ .-.+.+-+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn--~a~S~aLA 187 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN--FAFSIALA 187 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc--HHHHHHHH
Confidence 45667888899999998888888877 7777666776664 6677777777777665521 1122 22334445
Q ss_pred HHhcCCH---------------HHHHHHHHHHHH
Q 003020 783 YAVDGRF---------------KDVIGTFKDMVN 801 (856)
Q Consensus 783 ~~~~g~~---------------~~A~~~~~~~~~ 801 (856)
+...++. ++|...+++++.
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHH
Confidence 5555655 777777766655
No 387
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=64.43 E-value=77 Score=25.80 Aligned_cols=46 Identities=11% Similarity=-0.012 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 003020 443 CEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFH 488 (856)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 488 (856)
-++.+-++.+...++.|++....+.+++|.+.+++..|..+++.+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444555555555566666666666666666666666666666554
No 388
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.42 E-value=46 Score=27.05 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=15.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 777 NNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 777 ~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
-.++..+...|++++|+..+++.++
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455556666666666666666655
No 389
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=64.38 E-value=2.9e+02 Score=32.48 Aligned_cols=190 Identities=13% Similarity=-0.012 Sum_probs=91.7
Q ss_pred HccCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHH-----HHHHH
Q 003020 540 GMGRNYDKACNLFDSMTSH----GAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAV-----ISSYM 610 (856)
Q Consensus 540 ~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-----~~~~~ 610 (856)
...|++++|.++.+..... -..+....+..+..+..-.|++++|..+.....+..-.-++..+... ...+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 4567777777777666554 12233445566666677778888887777766554222233332222 12344
Q ss_pred hcCC--HHHHHHHHHHHHHCC--CC----CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHH
Q 003020 611 KLGQ--LEMAEEVYKDMIRFN--VE----PDVVVYGVLINAFAD-VGNVKQAQSYFDAMESAGLPPNAVIY--NSLIKLY 679 (856)
Q Consensus 611 ~~g~--~~~A~~~~~~~~~~~--~~----~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~ 679 (856)
.+|+ +.+.+..|....... -. +-..++..+..++.+ .+...++..-+.-.......|-...+ ..|+...
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~ 628 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELE 628 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHH
Confidence 5562 333333343333210 01 112334444444443 12222233323322222212222222 2566777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHH--HHHHcCCHHHHHHHHHH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASP----DVYTSNCMID--LYSERSMVRQAEEIFEI 729 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~--~~~~~g~~~~A~~~~~~ 729 (856)
...|+.++|...++++......+ +...-...+. .....|+.+.|.....+
T Consensus 629 ~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 629 FLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 77888888888887776622222 2222222222 23457777777776655
No 390
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=64.35 E-value=4.5 Score=36.17 Aligned_cols=83 Identities=14% Similarity=0.106 Sum_probs=40.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 003020 362 MIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRM 441 (856)
Q Consensus 362 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 441 (856)
++..+.+.+.......+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34445555555566666666654443444555666666666665555555555411 11222334444555555
Q ss_pred HHHHHHHHHH
Q 003020 442 VCEAEELISE 451 (856)
Q Consensus 442 ~~~A~~~~~~ 451 (856)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 391
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.99 E-value=1.6e+02 Score=29.17 Aligned_cols=130 Identities=12% Similarity=0.087 Sum_probs=55.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HH
Q 003020 611 KLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFAD-VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLK-EA 688 (856)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A 688 (856)
+...-++|+++-++++..++ .+-.+|.---..+-. ..+..+-++.++++.+.. +-|-..|..--......|++. .-
T Consensus 55 ~~E~S~RAl~LT~d~i~lNp-AnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNP-ANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred ccccCHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcccch
Confidence 33445555555555554431 122222221111111 113444455555555443 444444444333333444444 44
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHH
Q 003020 689 QETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAM 743 (856)
Q Consensus 689 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 743 (856)
+++.+.|.... ..+-..|..--.++..-+.++.-+.+..++++.+.-|-.+|+.
T Consensus 133 Lef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 133 LEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQ 186 (318)
T ss_pred HHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhhe
Confidence 45555555421 1223334333344444455555555555555554444444443
No 392
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=63.58 E-value=12 Score=35.50 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=34.4
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 715 SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 715 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.+.++.+.|.++++++...-|.....|..++..-.+.|+++.|.+.|++.++.+|.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 34556666666666666655666666666666666666666666666666665544
No 393
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.48 E-value=1.7e+02 Score=29.37 Aligned_cols=82 Identities=16% Similarity=0.264 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003020 668 NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM 747 (856)
Q Consensus 668 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 747 (856)
++.....++..|.+.|++.+|...|-.. -.|+...+..++......|...++- ......+--
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e~d--------------lfi~RaVL~ 150 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSEAD--------------LFIARAVLQ 150 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--HH--------------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcchh--------------HHHHHHHHH
Confidence 5567777788888888888877665321 1122333322332222223222221 112223344
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 003020 748 YKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~ 767 (856)
|.-.++...|...++...+.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 56677888888877766654
No 394
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=63.37 E-value=19 Score=38.49 Aligned_cols=89 Identities=7% Similarity=-0.169 Sum_probs=43.5
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCHh-hHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHH
Q 003020 436 YSIRRMVCEAEELISEMDGGGLEIDEY-TQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEA 514 (856)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 514 (856)
+...+.++.|..++.++++. .|+-. .+..-..++.+.+++..|+.-+.++.+..|....+|...+..+...+.+.+|
T Consensus 14 ~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 34445556666666665543 22222 2222224455555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhcCCC
Q 003020 515 ERAFICCQEGKK 526 (856)
Q Consensus 515 ~~~~~~~~~~~~ 526 (856)
...|+......|
T Consensus 92 ~~~l~~~~~l~P 103 (476)
T KOG0376|consen 92 LLDLEKVKKLAP 103 (476)
T ss_pred HHHHHHhhhcCc
Confidence 555554444433
No 395
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=62.81 E-value=2.6e+02 Score=31.91 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=16.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHH
Q 003020 358 TFNTMIHIYGNNDQLAEVDSLIKKM 382 (856)
Q Consensus 358 ~~~~ll~~~~~~g~~~~A~~~~~~~ 382 (856)
.|=..+..+.-.|.++.|.+++...
T Consensus 150 ~FW~~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 150 DFWDYVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH-TT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 3334677777889999999888553
No 396
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=62.77 E-value=2.1e+02 Score=30.31 Aligned_cols=56 Identities=23% Similarity=0.191 Sum_probs=34.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHh
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYS-ERSMVRQAEEIFEIMKK 732 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 732 (856)
..+.+.|-+..|+++.+-+...+..-|+.....+|+.|+ +.++++--+++++....
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 445666777777777777766555445555555666554 55666666666665443
No 397
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.42 E-value=23 Score=27.47 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=29.9
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003020 716 ERSMVRQAEEIFEIMKKKGDANE---FTYAMMLIMYKRNGRFEEATRIAKQ 763 (856)
Q Consensus 716 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 763 (856)
...+.++|+..|+++++..+..+ .++..|+.+|+..|++++.+++.-+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777766553322 2455566677777777776666443
No 398
>PRK09687 putative lyase; Provisional
Probab=62.30 E-value=1.8e+02 Score=29.46 Aligned_cols=121 Identities=14% Similarity=0.023 Sum_probs=49.6
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003020 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVG-NVKQAQSYFDAMESAGLPPNAVIYNSLI 676 (856)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 676 (856)
+..+-...+.++.+.++ ++|+..+-.+++ .+|...-...+.++.+.+ ...++...+..+... ++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence 33343444444444444 344444444443 223333333333333322 123444444444432 3444444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKK 732 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 732 (856)
.++.+.|+ .+|+..+-...+.+ +. ....+.+++..|.. +|+..+..+..
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~~--~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---TV--GDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---ch--HHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 55555554 33444443333321 11 12344444555543 45555555544
No 399
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=61.82 E-value=27 Score=24.80 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 742 AMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 742 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
..++-++.+.|++++|.+..+.+++..|.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 44566667777777777777777776654
No 400
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=61.81 E-value=2.3e+02 Score=30.39 Aligned_cols=59 Identities=17% Similarity=0.100 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 708 NCMIDLYSERSMVRQAEEIFEIMKKKG--------DANEFTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 708 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
..|++..+-.|++..|+++++.+.-.. +....++..++.+|...+++.+|++.|..++-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777766442211 33555788888888888889999888887753
No 401
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.60 E-value=10 Score=38.40 Aligned_cols=89 Identities=12% Similarity=0.007 Sum_probs=47.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003020 682 VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIA 761 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 761 (856)
.|.++.|++.|...++.+. +....|..-..++.+.++...|++-+......++....-|-.-..+....|+|++|...+
T Consensus 127 ~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred CcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 3445555555555544331 233344444445555555555555555555555555555555555555566666666666
Q ss_pred HHHHHcCCCC
Q 003020 762 KQMRESGLIS 771 (856)
Q Consensus 762 ~~~~~~~~~p 771 (856)
..+.+++..+
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 6666655443
No 402
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.40 E-value=1.9e+02 Score=28.78 Aligned_cols=300 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHH-------HHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 003020 200 MLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYG-------TLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQ 272 (856)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 272 (856)
+.+-..+.+++++|+..+.+.+..|+..+..+.+ .+...|...|++..-.+......+.-.+....--..+++
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHh-----cCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHH----
Q 003020 273 MYKK-----AGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASET---- 343 (856)
Q Consensus 273 ~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~---- 343 (856)
.+.. ...++.-..+.....+...- ......-...-..+|..+.+.|++.+|+.+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~r-----------------Ekr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADR-----------------EKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q ss_pred HHHHHHCCCCCCHHhHHHH-HHHHhcCCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHccCC--hHHHHHHHHH
Q 003020 344 FAQMLREGIVPTTVTFNTM-IHIYGNNDQLAEVDSLIKKMEEL----HCPPDTRTYNILIFLHAKNDK--ISMASRYFWK 416 (856)
Q Consensus 344 ~~~~~~~g~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~ 416 (856)
+.++.+.+-+|+..+...+ -.+|....++.++..-+..+... -+||-...---|+++-..+.+ +..|..+|-+
T Consensus 152 l~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~E 231 (421)
T COG5159 152 LHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIE 231 (421)
T ss_pred HHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHH
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 003020 417 MKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSE 496 (856)
Q Consensus 417 m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (856)
..+ +|.......+|...++-|+-..+ +++.-...+.+-.+....+... .....
T Consensus 232 a~E---------------gft~l~~d~kAc~sLkYmlLSkI---------MlN~~~evk~vl~~K~t~~~y~---~r~I~ 284 (421)
T COG5159 232 ALE---------------GFTLLKMDVKACVSLKYMLLSKI---------MLNRREEVKAVLRNKNTLKHYD---DRMIR 284 (421)
T ss_pred HHh---------------ccccccchHHHHHHHHHHHHHHH---------HHhhHHHHHHHHccchhHhhhh---hhhHH
Q ss_pred hhHHHHHHHhhcC--CHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccC
Q 003020 497 GYSANIDGYGERG--HVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGR 543 (856)
Q Consensus 497 ~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 543 (856)
+......++..+. ++..|+.-|..-...++.....++.+-+.+...+
T Consensus 285 am~avaea~~NRsL~df~~aL~qY~~el~~D~~iRsHl~~LYD~LLe~N 333 (421)
T COG5159 285 AMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFIRSHLQYLYDVLLEKN 333 (421)
T ss_pred HHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHHHHHHHHHHHHHHHHhh
No 403
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.90 E-value=78 Score=32.27 Aligned_cols=95 Identities=16% Similarity=0.014 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESAG---LPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDV-YTSNCMI 711 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~ 711 (856)
.|--=.+-|.+..++..|...|.+-++.. ...+.+.|+.-..+-...|++..|++--...+.. .|+. ..|-.=.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhhhh
Confidence 45555666777777888888887776542 1234466777776667777777777777666663 3442 2332333
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 003020 712 DLYSERSMVRQAEEIFEIMKK 732 (856)
Q Consensus 712 ~~~~~~g~~~~A~~~~~~~~~ 732 (856)
.++....++++|....++...
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 455566666777766666543
No 404
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=58.16 E-value=1.3e+02 Score=26.36 Aligned_cols=70 Identities=10% Similarity=0.005 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 701 SPDVYTSNCMIDLYSERS---MVRQAEEIFEIMKKKGDAN--EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 701 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.++..+--.+..++.+.. +..+.+.+++.+.+..+|. -.....|.-++.+.+++++++++.+.+++..|.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 355555555666666544 4667788888888633332 335566777888888999999988888887665
No 405
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.09 E-value=1.3e+02 Score=29.96 Aligned_cols=56 Identities=7% Similarity=-0.015 Sum_probs=22.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 606 ISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAME 661 (856)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (856)
|.+++..+++.++....-+.-+.--+....+...-|-.|.+.+.+..+.++-..-.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44455555555544433332221111112222223333455555555554444443
No 406
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=57.93 E-value=2.1e+02 Score=28.65 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETY 692 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~ 692 (856)
..+..+...|++.++.+.+.++.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~ 138 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWM 138 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHH
Confidence 34444445555555555544444
No 407
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.86 E-value=87 Score=27.19 Aligned_cols=44 Identities=16% Similarity=0.051 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCCCcC-hhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003020 212 YVQSLWDEMSVKGIVPI-NSTYGTLIDVCSKGGLKEEAVCWLERM 255 (856)
Q Consensus 212 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (856)
.+..+|..|..+|+-.. +.-|......+...|++++|.++|+..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 66666666666555432 234566666666677777777766653
No 408
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.30 E-value=88 Score=24.92 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHH
Q 003020 213 VQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAE 284 (856)
Q Consensus 213 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 284 (856)
+..+++...++|+- +..-...+-.+-...|+.+.|.+++.... .|+ ..|..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhhh
Confidence 45566666666644 33333333333335677777777777776 532 25667777777666655443
No 409
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=57.16 E-value=89 Score=38.13 Aligned_cols=156 Identities=14% Similarity=0.093 Sum_probs=102.6
Q ss_pred HHHhcCCHHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HhCCCCCCHHHHHH
Q 003020 643 AFADVGNVKQAQS------YFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLL-------RSLEASPDVYTSNC 709 (856)
Q Consensus 643 ~~~~~g~~~~A~~------~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~p~~~~~~~ 709 (856)
.....|.+.+|.+ ++......-.++....|..+...+-+.|+.++|+..-.+. ......-+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3445566666666 6664433323556678999999999999999998865432 22222223445666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC--CCHH
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKG--------DANEFTYAMMLIMYKRNGRFEEATRIAKQMRES-----GLI--SDLL 774 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~--p~~~ 774 (856)
+.-.+...+....|...+.++.... |+...+...+...+...++++.|+++.+.+... ++. ....
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 6666666777777887777665432 445556666666666678899999999888764 222 2446
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 775 SYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 775 ~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
++..+++.+...|++..|+...+.
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhh
Confidence 778888888888888777665544
No 410
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.15 E-value=6.3e+02 Score=33.71 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 736 ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 736 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
.-..+|...++.....|.++.|....-.+.+.++ +..+-..+.-+..+|+-..|+.++++.++.
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~---~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESRL---PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc---chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3456788888888888888888888777777662 366667777888888888888888888764
No 411
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.03 E-value=1.2e+02 Score=33.99 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 708 NCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMR 765 (856)
Q Consensus 708 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 765 (856)
..|.-+|....+.|.|.++++++.+.+|.++.+-..+..+....|+-++|+.......
T Consensus 398 R~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 398 RALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3444455556666666666666666666666666666666666666666666655544
No 412
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.42 E-value=23 Score=33.85 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=52.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 747 MYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 747 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
...+.++.+.|.++|.++++.-|. ....|.-++..-.+.|+.+.|.+.|++.++. .|+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~l--dp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL--DPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcC--Ccccc
Confidence 455778999999999999999887 7899999999999999999999999999883 44443
No 413
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=55.33 E-value=1.3e+02 Score=25.59 Aligned_cols=62 Identities=18% Similarity=0.101 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCH-HHHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRES-----GLISDL-LSYN----NVLGLYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~-~~~~----~l~~~~~~~g~~~~A~~~~~~~~ 800 (856)
..+..|..++...|++++++.-.++.+.. .+.-|. ..|. +-+.++...|+.++|+..|+..-
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 34455666666777776665555444421 112232 3342 33456778888888888887543
No 414
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.90 E-value=3.1e+02 Score=29.77 Aligned_cols=120 Identities=13% Similarity=0.026 Sum_probs=79.2
Q ss_pred CCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCC---------CcHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----
Q 003020 492 DMSSEGYSANIDGYGERGHVLEAERAFICCQEGKK---------LTVLVFNVMVKAYGMGRNYDKACNLFDSMTS----- 557 (856)
Q Consensus 492 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 557 (856)
..++.+...-...+.-.|++..|.+.+....-... ..-..||.|.-.+.+.|.+..+..+|.+.++
T Consensus 237 ~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 237 QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 34444444456777788999999888865433221 1234568888778888888877777777664
Q ss_pred --CCCCCCHH----------HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 003020 558 --HGAVPDKC----------SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKL 612 (856)
Q Consensus 558 --~~~~p~~~----------~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 612 (856)
.|++|... ......-.+...|++-.|.+.|.+.... +..++..|..+..+|...
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 35554321 1223445677889999999888887664 456778888888887643
No 415
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.27 E-value=1.1e+02 Score=24.81 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 741 YAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 741 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
...++......|++++|...++++++.
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334555566667777777777666654
No 416
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.93 E-value=2.4e+02 Score=28.23 Aligned_cols=139 Identities=19% Similarity=0.148 Sum_probs=60.8
Q ss_pred HHhcCCHHHHHHHHHH----HHHCCCCCCHHhHHHHHHHHhcCCCHH-HHHHHHHHHHh---CCC--CCCHHHHHHHHHH
Q 003020 331 YGKAGQLKEASETFAQ----MLREGIVPTTVTFNTMIHIYGNNDQLA-EVDSLIKKMEE---LHC--PPDTRTYNILIFL 400 (856)
Q Consensus 331 ~~~~g~~~~A~~~~~~----~~~~g~~p~~~~~~~ll~~~~~~g~~~-~A~~~~~~~~~---~~~--~~~~~~~~~li~~ 400 (856)
+.+.|+...|.++-.- ..+.+.++|......++..+...+.-+ +-.++.+.+.+ .+- .-|......+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 4455555555444333 333455666655556655555443221 22223333322 111 1255666777777
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHH
Q 003020 401 HAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKS 480 (856)
Q Consensus 401 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 480 (856)
|.+.|++.+|+.-|-.-.. |+...+..++......|...++ |.. ....+-.|.-.++...|
T Consensus 100 ~~~e~~~~~A~~Hfl~~~~----~~~~~~~~ll~~~~~~~~~~e~--------------dlf-i~RaVL~yL~l~n~~~A 160 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLGTD----PSAFAYVMLLEEWSTKGYPSEA--------------DLF-IARAVLQYLCLGNLRDA 160 (260)
T ss_dssp HHHTT-HHHHHHHHHTS-H----HHHHHHHHHHHHHHHHTSS--H--------------HHH-HHHHHHHHHHTTBHHHH
T ss_pred HHhhccHHHHHHHHHhcCC----hhHHHHHHHHHHHHHhcCCcch--------------hHH-HHHHHHHHHHhcCHHHH
Confidence 8888888777765533221 3333332333333333333332 111 12223345556677777
Q ss_pred HHHHHHHH
Q 003020 481 WLWFRRFH 488 (856)
Q Consensus 481 ~~~~~~~~ 488 (856)
...++.+.
T Consensus 161 ~~~~~~f~ 168 (260)
T PF04190_consen 161 NELFDTFT 168 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 417
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=51.58 E-value=39 Score=20.24 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 753 RFEEATRIAKQMRESGLISDLLSYNNV 779 (856)
Q Consensus 753 ~~~~A~~~~~~~~~~~~~p~~~~~~~l 779 (856)
+.+.|..+|++++...|. ++..|...
T Consensus 2 ~~~~~r~i~e~~l~~~~~-~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPK-SVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCC-ChHHHHHH
Confidence 344445555555544432 44444433
No 418
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=51.31 E-value=45 Score=33.44 Aligned_cols=55 Identities=11% Similarity=0.001 Sum_probs=23.7
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 716 ERSMVRQAEEIFEIMKKKGDANEFTYAM-MLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 716 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
+.|.+.+.-.++.++.+..|.|...|.. -..-+...++++.+..++.+.+..++.
T Consensus 119 k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 119 KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3344444444444444444444443332 222233444444444444444444444
No 419
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.21 E-value=2.6e+02 Score=27.74 Aligned_cols=174 Identities=11% Similarity=0.084 Sum_probs=117.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH-
Q 003020 644 FADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKV-GYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVR- 721 (856)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~- 721 (856)
+.+..+...|+.+-+..+..+ |.+-.+|.---..+... .+..+-++.++++.+... .+-..|..--......|++.
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lN-pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~np-KNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLN-PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNP-KNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HhccccCHHHHHHHHHHHHhC-cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHhcCccc
Confidence 456667888999998888764 44545554333333322 246666777777777443 33334433333344455666
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH------HHHHHH
Q 003020 722 QAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRF------KDVIGT 795 (856)
Q Consensus 722 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~------~~A~~~ 795 (856)
.-+++.+.|+..+..|-.+|..--+++..-+.++.=+.+..++++.++. +..+|+.-.-.......+ ++-+.+
T Consensus 131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~y 209 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELNY 209 (318)
T ss_pred chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHHH
Confidence 7789999999988889999999999999999999999999999999888 667777654333332222 333445
Q ss_pred HHHHHHcCCCCCHHH-HHHHHHHHHH-cC
Q 003020 796 FKDMVNAAIQPDDFT-FKSLGAVLMK-CG 822 (856)
Q Consensus 796 ~~~~~~~g~~p~~~~-~~~l~~~~~~-~G 822 (856)
..+++. +.|+..+ |+-|...+.. .|
T Consensus 210 t~~~I~--~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 210 TKDKIL--LVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred HHHHHH--hCCCCccHHHHHHHHHHhccC
Confidence 555555 5787765 8877777774 67
No 420
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=50.96 E-value=30 Score=36.76 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCC----
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRE-------SGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN---AAI---- 804 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~g~---- 804 (856)
.+...|++.++-.||+..|+++++.+.- .-+.-...+++.+|-+|.-.+||.+|++.|...+- +.-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~ 202 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYH 202 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3456788899999999999999876531 11112347889999999999999999999987754 110
Q ss_pred ----------CCCHHHHHHHHHHHHHcC-------HHHHH-------hhcchhhHHHHHHHHhhHhhhcc
Q 003020 805 ----------QPDDFTFKSLGAVLMKCG-------LELTR-------KKNAQSGLQAWMSTLSSVIEECD 850 (856)
Q Consensus 805 ----------~p~~~~~~~l~~~~~~~G-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 850 (856)
+.....|..+.-++.-+. ...++ .++...+.+.+..+++-++|.+.
T Consensus 203 ~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~acPKFI 272 (404)
T PF10255_consen 203 QRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFACPKFI 272 (404)
T ss_pred cccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhCCCcc
Confidence 122233443333333222 11222 22334478889999999988743
No 421
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.60 E-value=2.1e+02 Score=26.60 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCCCCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 720 VRQAEEIFEIMKKKGDANEF--------TYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
++.|+.+|+.+.+..+.+.. .-...+..|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 56777777777665533211 112334556677777777777777666
No 422
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=49.94 E-value=1.7e+02 Score=29.18 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=42.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----
Q 003020 536 VKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMK---- 611 (856)
Q Consensus 536 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 611 (856)
|.+++..++|.+++...-+--+.--+........-|-.|.+.+.+..+.++-...+...-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5566666666666554433332211122333444445556666666666555555543222223335555544433
Q ss_pred -cCCHHHHHHHH
Q 003020 612 -LGQLEMAEEVY 622 (856)
Q Consensus 612 -~g~~~~A~~~~ 622 (856)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666655
No 423
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=49.24 E-value=1.3e+02 Score=30.01 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=46.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 743 MMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSL 814 (856)
Q Consensus 743 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 814 (856)
.+=.++.+.++++.|....++.+..+|. |+.-+.--+.+|.+.|-+.-|++-++..++. .|+..+..++
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~-dp~eirDrGliY~ql~c~~vAl~dl~~~~~~--~P~~~~a~~i 254 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPE-DPYEIRDRGLIYAQLGCYHVALEDLSYFVEH--CPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCC-ChhhccCcHHHHHhcCCchhhHHHHHHHHHh--CCCchHHHHH
Confidence 3445566777777777777777777776 6666666777777777777777777776663 5555444333
No 424
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=49.21 E-value=39 Score=20.24 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003020 718 SMVRQAEEIFEIMKKKGDANEFTYAMMLI 746 (856)
Q Consensus 718 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 746 (856)
|+.+.|..+|+++....|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677777777777776766666665543
No 425
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=48.77 E-value=2.4e+02 Score=26.72 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003020 635 VVYGVLINAFADVGNVKQAQSYFDAMESA 663 (856)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (856)
...+.++..+...|+++.|-+.|.-++..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 34455666666667777777666666554
No 426
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=48.63 E-value=3e+02 Score=28.29 Aligned_cols=118 Identities=16% Similarity=0.117 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 650 VKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK------VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQA 723 (856)
Q Consensus 650 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 723 (856)
.+++..++++....+ .|.+......|.++-- .-+|..-..+|+.+.....+|-+ +.|-.+ +.....-.+.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV-~LNRAV-Ala~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVV-TLNRAV-ALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeE-eehHHH-HHHHhhhHHhH
Confidence 466677777776665 3666666555554421 23566666777776665443332 222222 22333335566
Q ss_pred HHHHHHHHhCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 724 EEIFEIMKKKGDAN--EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 724 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
+.+.+.+...+.-+ ...+..-+..+.+.|+.++|...|++++.....
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 66666666554222 223344556677777777777777777776544
No 427
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.84 E-value=4.4e+02 Score=29.42 Aligned_cols=30 Identities=20% Similarity=0.322 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHhcCC----HHHHHHHHHHHHH
Q 003020 772 DLLSYNNVLGLYAVDGR----FKDVIGTFKDMVN 801 (856)
Q Consensus 772 ~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~ 801 (856)
...++..++..|+...+ ..+++..++....
T Consensus 482 e~pal~~lv~lY~~r~~~vWk~P~~ls~l~~~~~ 515 (665)
T KOG2422|consen 482 ELPALMLLVKLYANRNEEVWKLPDVLSFLESAYH 515 (665)
T ss_pred cchHHHHHHHHHHhhhhHhhcChHHHHHHHHHHH
Confidence 34566777777765543 2344444444443
No 428
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.55 E-value=3.1e+02 Score=29.33 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=35.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 003020 607 SSYMKLGQLEMAEEVYKDMIRFNVEPDVV--VYGVLINAFA--DVGNVKQAQSYFDAMESA 663 (856)
Q Consensus 607 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 663 (856)
..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445677888888888888775 444443 4444445554 355677777777776654
No 429
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.51 E-value=3.8e+02 Score=28.71 Aligned_cols=55 Identities=20% Similarity=0.124 Sum_probs=39.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 003020 643 AFADVGNVKQAQSYFDAMESAGLPPNAV--IYNSLIKLYT--KVGYLKEAQETYKLLRSL 698 (856)
Q Consensus 643 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 698 (856)
.+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345788999999999999876 666555 3444444443 466788899888887663
No 430
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.02 E-value=1.3e+02 Score=33.71 Aligned_cols=85 Identities=7% Similarity=0.107 Sum_probs=65.5
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003020 716 ERSMVRQAEEIFEIMKKKGDANE------FTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRF 789 (856)
Q Consensus 716 ~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 789 (856)
+..+|..+.++|+.-...-+.|. .....|..+|....+.|.|.++++++.+.+|. ++.+--.+..+....|+-
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhcch
Confidence 45667777777765554433322 24567778888889999999999999999887 777777777888899999
Q ss_pred HHHHHHHHHHHH
Q 003020 790 KDVIGTFKDMVN 801 (856)
Q Consensus 790 ~~A~~~~~~~~~ 801 (856)
++|+........
T Consensus 445 e~AL~~~~~~~s 456 (872)
T KOG4814|consen 445 EEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHh
Confidence 999999887765
No 431
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=46.48 E-value=79 Score=31.80 Aligned_cols=80 Identities=9% Similarity=-0.049 Sum_probs=60.1
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHH-HHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 003020 459 IDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSA-NIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVK 537 (856)
Q Consensus 459 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 537 (856)
.|+..+...+.-..+.+.+.+.-.+|.++...+|.+.+.|.. -..-+...++++.++.+|......++.++.+|.....
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 355555555555555667777778888888888988888876 4556777889999999999988888888888876554
Q ss_pred H
Q 003020 538 A 538 (856)
Q Consensus 538 ~ 538 (856)
.
T Consensus 185 ~ 185 (435)
T COG5191 185 M 185 (435)
T ss_pred H
Confidence 3
No 432
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=46.34 E-value=4.9e+02 Score=29.59 Aligned_cols=97 Identities=12% Similarity=0.131 Sum_probs=53.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHh-hHHHHHHHHHH
Q 003020 395 NILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEY-TQSALTRMYIE 473 (856)
Q Consensus 395 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~ 473 (856)
..++..+.+++--.+|.+++-+..... ++--|....++......+..+...-+.||.. ........|.+
T Consensus 182 ~~iV~f~mkHNAE~eAiDlL~Eve~id----------~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlK 251 (878)
T KOG2005|consen 182 QEIVPFHMKHNAEFEAIDLLMEVEGID----------LLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLK 251 (878)
T ss_pred HHHHHHHHhccchhHHHHHHHHhhhHh----------HHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHH
Confidence 344556667777777777776654321 2223444444555555555555443444433 44455566666
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHh
Q 003020 474 AGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQ 522 (856)
Q Consensus 474 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 522 (856)
.+++.+|.. ...+.++.+.+.++|..+.
T Consensus 252 f~~~~~al~---------------------~ai~l~~~~~v~~vf~s~~ 279 (878)
T KOG2005|consen 252 FNEYPRALV---------------------GAIRLDDMKEVKEVFTSCT 279 (878)
T ss_pred HHHhHHHHH---------------------HHHhcCcHHHHHHHHHhcc
Confidence 666655533 3445566667777776654
No 433
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.79 E-value=1.7e+02 Score=25.41 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 756 EATRIAKQMRESGLIS-DLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 756 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
.+..+|+.|...++-. -+..|...+..+...|++++|.++|+..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 7888888888766553 3466777888888888888888888764
No 434
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=45.19 E-value=49 Score=20.60 Aligned_cols=24 Identities=8% Similarity=0.315 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhCCCCcChhhHHHH
Q 003020 210 WSYVQSLWDEMSVKGIVPINSTYGTL 235 (856)
Q Consensus 210 ~~~A~~~~~~~~~~~~~p~~~~~~~l 235 (856)
++.|..+|++.+. +.|++.+|...
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHHHH
Confidence 4555555555554 23455555443
No 435
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.10 E-value=2.5e+02 Score=27.69 Aligned_cols=19 Identities=37% Similarity=0.317 Sum_probs=10.8
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 003020 748 YKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~ 766 (856)
|-..|+.++|.++.+++.+
T Consensus 179 yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 179 YEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHTSS-HHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHH
Confidence 3445666666666666554
No 436
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=44.60 E-value=4.1e+02 Score=28.20 Aligned_cols=138 Identities=13% Similarity=0.052 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--------HHHHhcCCHHHHHHHHHHHHh-CCCCCC
Q 003020 633 DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLI--------KLYTKVGYLKEAQETYKLLRS-LEASPD 703 (856)
Q Consensus 633 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~--------~~~~~~g~~~~A~~~~~~~~~-~~~~p~ 703 (856)
+...+-.++-.+..+.++.+|..+-+.....-..-|..++..+. ..|...|+...-...+..... .....|
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 704 ----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKG----DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 704 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
....|+|++.|...+.++.|..+..+..--. ..-..-...++...+-++++..|.+.+-+++.+.|.
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
No 437
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.08 E-value=5e+02 Score=29.01 Aligned_cols=157 Identities=18% Similarity=0.120 Sum_probs=82.9
Q ss_pred hcCCHHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCC-------
Q 003020 611 KLGQLEMAEEVYKDMIRFNV-----------EPDVVVYGVLINAFADVGNVKQAQSYFDAMES-------AGL------- 665 (856)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~------- 665 (856)
....+++|...|.-....-. +-.+.+.-.+...+..+|+.+.|..+.++.+= ..+
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 34457777777777665321 11234455556667777777777776655421 111
Q ss_pred ------CCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCC-
Q 003020 666 ------PPNAVIYNSL---IKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYS-ERSMVRQAEEIFEIMKKKG- 734 (856)
Q Consensus 666 ------~p~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~- 734 (856)
+-|...|-+| +..+.+.|-+..|+++-+.+.+....-|+.....+|+.|. ++.+|+--+++++......
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 1122233332 2334566677777777666666554445555555566554 5566666666666554333
Q ss_pred ---CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHc
Q 003020 735 ---DANEFTYAMMLIMYKRNGR---FEEATRIAKQMRES 767 (856)
Q Consensus 735 ---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~ 767 (856)
-||...-.+|+..|.+... ...|...+.+++..
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 2333333344445544443 34455555555554
No 438
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=44.02 E-value=5.9e+02 Score=29.84 Aligned_cols=97 Identities=12% Similarity=0.074 Sum_probs=61.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH---hcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003020 320 SSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIY---GNNDQLAEVDSLIKKMEELHCPPDTRTYNI 396 (856)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 396 (856)
+...++.||..+.+.|++++....-.+|.+.- +.+...|...+... ...++..++..+|++.+..- .++..|--
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHHHH
Confidence 55778889999999999998888877777653 22444554444332 23467778888888877432 23334433
Q ss_pred HHHHH-------HccCChHHHHHHHHHHHH
Q 003020 397 LIFLH-------AKNDKISMASRYFWKMKE 419 (856)
Q Consensus 397 li~~~-------~~~g~~~~A~~~~~~m~~ 419 (856)
.+.-+ -+.++++....+|.+.+.
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHh
Confidence 33322 334667778888887764
No 439
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.05 E-value=1.4e+02 Score=28.22 Aligned_cols=35 Identities=9% Similarity=-0.061 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003020 701 SPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD 735 (856)
Q Consensus 701 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 735 (856)
.|+...|..++.++...|+.++|....+++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 35555555555555555555555555555554444
No 440
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=42.91 E-value=3.7e+02 Score=27.18 Aligned_cols=87 Identities=10% Similarity=0.045 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----HHcCCCCCH
Q 003020 735 DANEFTYAMMLIMYKRNGRFEEATRIAKQMRES-GLISDLLSYNNVLGLYAVDGRFKDVIGTFKDM-----VNAAIQPDD 808 (856)
Q Consensus 735 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~g~~p~~ 808 (856)
.++..+....+..++..++|.+-.++++..... ++..|..-|..++..-...|+..-..++..+- .+.++.-+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~ 278 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTD 278 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCH
Confidence 455666677777778888888888887777665 56667777888888888888755443333321 112344455
Q ss_pred HHHHHHHHHHHHc
Q 003020 809 FTFKSLGAVLMKC 821 (856)
Q Consensus 809 ~~~~~l~~~~~~~ 821 (856)
..-..|-..|.+.
T Consensus 279 ~L~~~L~~LF~~v 291 (292)
T PF13929_consen 279 ELRSQLSELFKKV 291 (292)
T ss_pred HHHHHHHHHHHhc
Confidence 5555555544443
No 441
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=42.68 E-value=4.6e+02 Score=28.18 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003020 638 GVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYS 715 (856)
Q Consensus 638 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 715 (856)
..|+.-|...|+..+|..+.+++--- +-.....+.+++.+..+.|+-+.-+.+++..-..| ..|-+.|-.+|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~ 585 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhh
Confidence 45666777788888888777765221 12344677788888888887776666666665533 234445555554
No 442
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.65 E-value=6.4e+02 Score=29.84 Aligned_cols=130 Identities=15% Similarity=0.157 Sum_probs=80.1
Q ss_pred HHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003020 274 YKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIV 353 (856)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 353 (856)
...+|+++.|++.-.++. +..+|..|+....++|+.+-|+-.|++...
T Consensus 653 aLe~gnle~ale~akkld----------------------------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---- 700 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD----------------------------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---- 700 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC----------------------------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh----
Confidence 456788888887776654 457899999999999999999888887653
Q ss_pred CCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 003020 354 PTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLL 433 (856)
Q Consensus 354 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 433 (856)
|..|--.|.-.|+.++..++...+..++ |..+. .... .-.|++++-.++++..-. -| ..|.
T Consensus 701 -----fekLsfLYliTgn~eKL~Km~~iae~r~---D~~~~-~qna--lYl~dv~ervkIl~n~g~---~~--layl--- 761 (1202)
T KOG0292|consen 701 -----FEKLSFLYLITGNLEKLSKMMKIAEIRN---DATGQ-FQNA--LYLGDVKERVKILENGGQ---LP--LAYL--- 761 (1202)
T ss_pred -----hhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHHH-HHHH--HHhccHHHHHHHHHhcCc---cc--HHHH---
Confidence 3344445666788888887777665432 32211 1111 124666666555544321 11 1111
Q ss_pred HHHHhcCCHHHHHHHHHHHhcC
Q 003020 434 YAYSIRRMVCEAEELISEMDGG 455 (856)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~ 455 (856)
....+|.-++|.++.++....
T Consensus 762 -ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 762 -TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred -HHhhcCcHHHHHHHHHhhccc
Confidence 223467777788877777553
No 443
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=42.28 E-value=6e+02 Score=29.39 Aligned_cols=117 Identities=22% Similarity=0.308 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHhcCCH
Q 003020 584 KRYLRKMQEAGLVSD---CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVV----------VYGVLINAFADVGNV 650 (856)
Q Consensus 584 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~ 650 (856)
..++.+|...--.|+ ..+...++-.|....+++..+++.+.+.+. ||.. .|...++---+-|+-
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccH
Confidence 345555655433333 334555666677777888888888877653 3221 111111212234667
Q ss_pred HHHHHHHHHHHHC-C-CCCCHHH-----HHHH--HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003020 651 KQAQSYFDAMESA-G-LPPNAVI-----YNSL--IKLYTKVGYLKEAQETYKLLRSLEASPDVY 705 (856)
Q Consensus 651 ~~A~~~~~~~~~~-~-~~p~~~~-----~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 705 (856)
++|+...-.+.+. | +.||..+ |.-+ -..|...+..+.|.++|++.-+ +.|...
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~ 321 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEY 321 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhh
Confidence 7777766666442 2 3455432 1111 1223345566777888877755 445544
No 444
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=41.95 E-value=1.7e+02 Score=25.21 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=17.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003020 698 LEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKK 733 (856)
Q Consensus 698 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 733 (856)
.++.|++..-...+++|.+-+++..|.++|+-+..+
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 334444444444445555555555555555444433
No 445
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.52 E-value=86 Score=31.43 Aligned_cols=55 Identities=13% Similarity=-0.005 Sum_probs=27.9
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 716 ERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 716 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
+.|+.++|..+|+.++...|.++.++.-++...-..++.-+|-+.|-+++...|.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 3455555555555555555555555555554444445555555555555444443
No 446
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=40.67 E-value=2.3e+02 Score=34.53 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHcCHHHHHhhcchhhHHHHHHHHhhHh
Q 003020 805 QPDDFTFKSLGAVLMKCGLELTRKKNAQSGLQAWMSTLSSVI 846 (856)
Q Consensus 805 ~p~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 846 (856)
+.|+.-|--.++-|.+.--.. |+-..+.-++-|..+|.|++
T Consensus 885 QkDPKEYLPfL~~L~~l~~~~-rry~ID~hLkRy~kAL~~L~ 925 (928)
T PF04762_consen 885 QKDPKEYLPFLQELQKLPPLY-RRYKIDDHLKRYEKALRHLS 925 (928)
T ss_pred ccChHHHHHHHHHHHhCChhh-eeeeHhhhhCCHHHHHHHHH
Confidence 456666666666666665222 55556666666766666654
No 447
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=40.46 E-value=2.3e+02 Score=29.17 Aligned_cols=70 Identities=16% Similarity=0.257 Sum_probs=33.8
Q ss_pred HHcCCHHHHHHHHHHHHhCC----CCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCH-HHHHHHHHH
Q 003020 715 SERSMVRQAEEIFEIMKKKG----DANEFTY--AMMLIMYKRNGRFEEATRIAKQMRE-----SGLISDL-LSYNNVLGL 782 (856)
Q Consensus 715 ~~~g~~~~A~~~~~~~~~~~----~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~-~~~~~l~~~ 782 (856)
.+.++.++|+++++++.+.- .|++..| ..+++.+...|+.+++.+.+....+ .++.|+. ..|+.+..-
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssq 165 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQ 165 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHH
Confidence 34445556665555554322 3333333 2344445556666666666655554 3444333 334445443
Q ss_pred HH
Q 003020 783 YA 784 (856)
Q Consensus 783 ~~ 784 (856)
|.
T Consensus 166 Yy 167 (380)
T KOG2908|consen 166 YY 167 (380)
T ss_pred HH
Confidence 33
No 448
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.55 E-value=5.3e+02 Score=27.99 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 003020 542 GRNYDKACNLFDSMTSHGAVPDKCSY 567 (856)
Q Consensus 542 ~g~~~~A~~~~~~m~~~~~~p~~~~~ 567 (856)
..+++.|+.++..|.+.|..|....-
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~r 268 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIAR 268 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 36777777777777777766554333
No 449
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=39.07 E-value=1.3e+02 Score=26.02 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=42.9
Q ss_pred HHHHHHHHhHHcCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChh-hHHHHHHHHHcCCCHHHHHHH
Q 003020 176 RALEIFEWFKRQECHELNV---IHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINS-TYGTLIDVCSKGGLKEEAVCW 251 (856)
Q Consensus 176 ~A~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~ 251 (856)
++.+.|..... +..|+ ..|-.++..+ .+...+|..|..+|+-.... -|......+-..|++.+|.++
T Consensus 51 rc~~~f~~~~~---YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~i 121 (125)
T smart00777 51 RCIRYFEDDER---YKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEV 121 (125)
T ss_pred HHHHHhhhhhh---hcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35555554432 34444 3444444432 34677788888877664433 466777777888888888888
Q ss_pred HHH
Q 003020 252 LER 254 (856)
Q Consensus 252 ~~~ 254 (856)
|+.
T Consensus 122 y~~ 124 (125)
T smart00777 122 YQL 124 (125)
T ss_pred HHc
Confidence 763
No 450
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=38.90 E-value=2.9e+02 Score=24.71 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=46.5
Q ss_pred HHHCCCCCCHH--hHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHccCC-hHHHHHHHHHHH
Q 003020 347 MLREGIVPTTV--TFNTMIHIYGNNDQLAEVDSLIKKMEELHC-----PPDTRTYNILIFLHAKNDK-ISMASRYFWKMK 418 (856)
Q Consensus 347 ~~~~g~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 418 (856)
|.+.+..++.. ..+.++.-....++......+++.+..... ..+...|.+++.+..+... ---+..+|.-|.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 33344444443 346666666666777776666666632210 1233445555555544333 233445555555
Q ss_pred HcCCCCCHHhHHHHHHHHH
Q 003020 419 EANLEPDIVSYRTLLYAYS 437 (856)
Q Consensus 419 ~~~~~~~~~~~~~ll~~~~ 437 (856)
+.+.+++..-|..++.++.
T Consensus 108 ~~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 5455555555555555544
No 451
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.88 E-value=1.7e+02 Score=23.88 Aligned_cols=52 Identities=12% Similarity=0.123 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003020 758 TRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTF 811 (856)
Q Consensus 758 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 811 (856)
++.++++...+....+....+|+-.|...|+.+.|.+-|+.=.. +.|+..+|
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~f 108 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVF 108 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhH
Confidence 44455555554443456666777777778887777777776433 56666554
No 452
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=37.74 E-value=1.1e+02 Score=19.61 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=6.8
Q ss_pred HHHHHHhcCCHHHHHHH
Q 003020 779 VLGLYAVDGRFKDVIGT 795 (856)
Q Consensus 779 l~~~~~~~g~~~~A~~~ 795 (856)
++-.+..+|++++|+.+
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33334444444444444
No 453
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=37.67 E-value=4.7e+02 Score=26.88 Aligned_cols=17 Identities=6% Similarity=0.042 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHHHCC
Q 003020 613 GQLEMAEEVYKDMIRFN 629 (856)
Q Consensus 613 g~~~~A~~~~~~~~~~~ 629 (856)
++.+....++..+...+
T Consensus 36 ~~~~~~e~l~~~Ird~~ 52 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDED 52 (393)
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 34555555666665544
No 454
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.01 E-value=4.5e+02 Score=26.44 Aligned_cols=100 Identities=8% Similarity=0.049 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---
Q 003020 633 DVVVYGVLINAFADVGNVKQAQSYFDAMES----AGLPPNAVI-YNSLIKLYTKVGYLKEAQETYKLLRSLEASPDV--- 704 (856)
Q Consensus 633 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--- 704 (856)
-..++..+...|++.++.+.+.++..+... .|.+.|+.. --.++-.|....-+++-++..+.+.+.|-.-+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 355777888888988888888887766543 344444321 122333344445567777777788776643322
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003020 705 -YTSNCMIDLYSERSMVRQAEEIFEIMKKKG 734 (856)
Q Consensus 705 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 734 (856)
.+|.-+. +....++.+|-.++-..+...
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhccc
Confidence 1232221 234456777777776665444
No 455
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.61 E-value=6e+02 Score=27.77 Aligned_cols=163 Identities=14% Similarity=0.059 Sum_probs=100.0
Q ss_pred HhcCCHHHHHHHHHHHHHCC-CCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHH
Q 003020 645 ADVGNVKQAQSYFDAMESAG-LPPNA--------VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVY--TSNCMIDL 713 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~-~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~ 713 (856)
.-.|++.+|++-...|.+-- -.|.+ ..-..++-.+...+.++.|..-|....+.-..-|.. .-..+.-.
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 34789999999888886521 12331 122233444556789999999998777643334433 23345567
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHH
Q 003020 714 YSERSMVRQAEEIFEIMKKKGDANEFT----------YAMMLIMYKRNGRFEEATRIAKQMRESGLISD-----LLSYNN 778 (856)
Q Consensus 714 ~~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~ 778 (856)
|.+.|+.+.-.++++.+ +|+|..+ +..-+-....++++.||.....+.++..-.-| .-....
T Consensus 414 YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvL 490 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLI---GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVL 490 (629)
T ss_pred HHHhccHHHHHHHHHhc---CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 88877666555555544 4443322 22233334578999999999998887631112 123455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHH
Q 003020 779 VLGLYAVDGRFKDVIGTFKDMVN-AAIQPDDFT 810 (856)
Q Consensus 779 l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~ 810 (856)
++.+....|+..++..+..-..+ ..=.||..+
T Consensus 491 Ls~v~lslgn~~es~nmvrpamqlAkKi~Di~v 523 (629)
T KOG2300|consen 491 LSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV 523 (629)
T ss_pred HHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence 66777888999999887776555 122567554
No 456
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=36.53 E-value=3.6e+02 Score=33.36 Aligned_cols=100 Identities=17% Similarity=0.087 Sum_probs=45.4
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHH-------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------
Q 003020 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMI-------RFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESA------- 663 (856)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 663 (856)
....|..+...+.+.|+.++|+..-.+.. ......+...|..+.-.....++...|+..+.+....
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 34445666666666666666665443322 1111122334444444444444555555544444321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 664 GLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 664 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
..||...+++.+-..+...++++.|+++.+.+.+
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1123333334444444444555566555555443
No 457
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.42 E-value=94 Score=29.43 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=28.7
Q ss_pred HHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 003020 215 SLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEG 258 (856)
Q Consensus 215 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 258 (856)
+..++..+ ..|+..+|..++.++...|+.++|.++.+++...
T Consensus 132 ~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 132 EWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33344444 3567777777777777788888887777777765
No 458
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.03 E-value=8.4e+02 Score=29.31 Aligned_cols=38 Identities=21% Similarity=0.123 Sum_probs=25.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003020 679 YTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE 716 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 716 (856)
|......+-++.+++.+....-.++....+.++..|.+
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 45566677778888877765445666666677766653
No 459
>PRK12798 chemotaxis protein; Reviewed
Probab=35.94 E-value=5.8e+02 Score=27.38 Aligned_cols=193 Identities=10% Similarity=0.041 Sum_probs=116.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHH
Q 003020 612 LGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFA-DVGNVKQAQSYFDAMESAGLPPNA----VIYNSLIKLYTKVGYLK 686 (856)
Q Consensus 612 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~ 686 (856)
.|+.++|.+.+..+.....++....+-.|+.+-. ...++.+|+.+|+...-. .|.. .....-+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888888888888876666677777777776644 456788899999887653 2332 23444445566788888
Q ss_pred HHHHHHHHHHh-CCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003020 687 EAQETYKLLRS-LEASPDVYTSN-CMIDLYSERSMVRQAEEIFEIMKKKGDA--NEFTYAMMLIMYKRNGRFEEATRIAK 762 (856)
Q Consensus 687 ~A~~~~~~~~~-~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 762 (856)
++..+-..... ...+|-..-|. .+...+.+.++-..- +.+..++..-++ -...|..+.+.-.-.|+.+.|....+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 87666544433 33344333222 233333333322211 224444433322 24478888888889999999999999
Q ss_pred HHHHcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 763 QMRESGLISDL-----LSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 763 ~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
+++......+. ..|... +-.-..++++|++.++.+-...+.|...
T Consensus 282 ~A~~L~~~~~~~~~ra~LY~aa--a~v~s~~~~~al~~L~~I~~~~L~~~Dr 331 (421)
T PRK12798 282 RALKLADPDSADAARARLYRGA--ALVASDDAESALEELSQIDRDKLSERDR 331 (421)
T ss_pred HHHHhccCCCcchHHHHHHHHH--HccCcccHHHHHHHHhcCChhhCChhhH
Confidence 88887533221 122222 2234556888888888776665665543
No 460
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.61 E-value=1.5e+02 Score=29.51 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=12.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 003020 709 CMIDLYSERSMVRQAEEIFEIM 730 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~ 730 (856)
.+...|...|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555555555555554
No 461
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.51 E-value=2.7e+02 Score=23.35 Aligned_cols=17 Identities=6% Similarity=-0.064 Sum_probs=7.6
Q ss_pred HhcCCHHHHHHHHHHHH
Q 003020 784 AVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 784 ~~~g~~~~A~~~~~~~~ 800 (856)
.+.|--+++...+.++-
T Consensus 80 ~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 80 WKLGLASALESRLTRLA 96 (116)
T ss_dssp HHCT-HHHHHHHHHHHC
T ss_pred HhhccHHHHHHHHHHHH
Confidence 34455555544444443
No 462
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=34.96 E-value=5.3e+02 Score=26.69 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH-H
Q 003020 743 MMLIMYKRNGRFEEATRIAKQMRES---GLISDLLSY--NNVLGLYAVDGRFKDVIGTFKDMVN-----AAIQPDDFT-F 811 (856)
Q Consensus 743 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~-~ 811 (856)
.++....+.++.++|+++.+++.+. .-.|++..| ..+++++...|+.+++.+.+.+... .++.|+..+ |
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3444555667899999999998764 334566655 4567888899999999999988777 577776654 7
Q ss_pred HHHHHHHHHcC
Q 003020 812 KSLGAVLMKCG 822 (856)
Q Consensus 812 ~~l~~~~~~~G 822 (856)
..+..-|.+.-
T Consensus 160 Y~lssqYyk~~ 170 (380)
T KOG2908|consen 160 YSLSSQYYKKI 170 (380)
T ss_pred HHHHHHHHHHH
Confidence 77776666543
No 463
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.53 E-value=6.3e+02 Score=27.41 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 648 GNVKQAQSYFDAMESAGLPPNAVIYNSLIKLY 679 (856)
Q Consensus 648 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 679 (856)
++.+.|+.++..|.+.|..|....-..+..++
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45555555555555555444433333333333
No 464
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.51 E-value=2.8e+02 Score=23.30 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=19.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 003020 531 VFNVMVKAYGMGRNYDKACNLFDSMTS 557 (856)
Q Consensus 531 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 557 (856)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366777777777777777777777665
No 465
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=34.11 E-value=3.8e+02 Score=26.39 Aligned_cols=48 Identities=19% Similarity=0.066 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHh---CCCCCCHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHh
Q 003020 685 LKEAQETYKLLRS---LEASPDVYTSNCM-----IDLYSERSMVRQAEEIFEIMKK 732 (856)
Q Consensus 685 ~~~A~~~~~~~~~---~~~~p~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~ 732 (856)
.+.|.+.|+.+.+ ..++|...++-.+ +-.|...|+.++|.++.+.+..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3566666665543 1244543332222 2234568999999998887754
No 466
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.84 E-value=4.6e+02 Score=25.59 Aligned_cols=136 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 565 CSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAF 644 (856)
Q Consensus 565 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 644 (856)
.....-+..|.+.-++-.|-...+++.+ ...+-.+++. |.+..+..--.++.+-....+++-+.....+++ +
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--f 202 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKIIE-----PIQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--F 202 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhhh-----hHHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--h
Q ss_pred HhcCCHHHHHHHHHHHHHC-------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003020 645 ADVGNVKQAQSYFDAMESA-------------GLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCM 710 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~-------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 710 (856)
...|+..+|+.-++.-... + .|.+.....++..| ..+++++|.+++..+.+.|++|....-+..
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d-~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCD-EPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccC-CCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 467
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.70 E-value=47 Score=28.86 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=24.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 003020 333 KAGQLKEASETFAQMLREGIVPTTVTFNTMIHIY 366 (856)
Q Consensus 333 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 366 (856)
..|.-.+|..+|.+|++.|-+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34666788999999999998887 466666543
No 468
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=33.65 E-value=3.1e+02 Score=23.52 Aligned_cols=86 Identities=12% Similarity=0.054 Sum_probs=46.0
Q ss_pred hcCCHHHHHHHHHHHHh--CCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hCCCCCHHHHH
Q 003020 681 KVGYLKEAQETYKLLRS--LEASP---------DVYTSNCMIDLYSERSMVRQAEEIFEIMK-------KKGDANEFTYA 742 (856)
Q Consensus 681 ~~g~~~~A~~~~~~~~~--~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~ 742 (856)
..|.+++|..-+++..+ ..++| |...+..|..++...|++++++...+..+ +........|.
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 34566666655554433 22222 23344556667777777776655544433 22233333343
Q ss_pred ----HHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 743 ----MMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 743 ----~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
+-+.++-..|+.++|++.|+..-+
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 345567788999999999887643
No 469
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.32 E-value=1.5e+02 Score=20.40 Aligned_cols=34 Identities=9% Similarity=0.236 Sum_probs=22.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 003020 331 YGKAGQLKEASETFAQMLREGIVPTTVTFNTMIH 364 (856)
Q Consensus 331 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 364 (856)
..+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3466677777777777777777666666665554
No 470
>PRK14700 recombination factor protein RarA; Provisional
Probab=33.04 E-value=4.2e+02 Score=27.02 Aligned_cols=62 Identities=27% Similarity=0.338 Sum_probs=36.8
Q ss_pred HHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHCCCC
Q 003020 605 VISSYMK---LGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNV-----KQAQSYFDAMESAGLP 666 (856)
Q Consensus 605 l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~ 666 (856)
+++++.+ -.+.+.|+-.+.+|++.|..|....-..++.+.-.-|.- ..|...++.....|+|
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 3455443 347777777788888777666666666666666665532 2344444444455543
No 471
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.58 E-value=1.1e+02 Score=22.50 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=10.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 003020 639 VLINAFADVGNVKQAQSYFDAM 660 (856)
Q Consensus 639 ~l~~~~~~~g~~~~A~~~~~~~ 660 (856)
.++.++.+.|++++|.++.+++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555555555554444
No 472
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=32.50 E-value=3.7e+02 Score=24.06 Aligned_cols=81 Identities=9% Similarity=0.158 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003020 602 YCAVISSYMKLGQLEMAEEVYKDMIRFNV-----EPDVVVYGVLINAFADVGN-VKQAQSYFDAMESAGLPPNAVIYNSL 675 (856)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l 675 (856)
.+.++.-....+++...+.+++.+..... ..+..+|..++.+..+..- ---+..+|+-+.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34444444444555555555554432110 2244567777777755544 33456677777766677777778777
Q ss_pred HHHHHhc
Q 003020 676 IKLYTKV 682 (856)
Q Consensus 676 ~~~~~~~ 682 (856)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7776543
No 473
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=32.34 E-value=8.9e+02 Score=28.50 Aligned_cols=66 Identities=11% Similarity=-0.016 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHH---HcCCCHHHHHHHHHHHHhC
Q 003020 192 LNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVC---SKGGLKEEAVCWLERMNEG 258 (856)
Q Consensus 192 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~ 258 (856)
-+...++.||..+.+.|+++.....-.+|.+.-+ .+...|...+... ...+...++..+|++.+..
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~p-l~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d 179 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAP-LPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD 179 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc
Confidence 3445666677777777777766666666655422 2455666655543 2335566666666666544
No 474
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.95 E-value=4.3e+02 Score=24.70 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCCCC--HHH-----HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003020 685 LKEAQETYKLLRSLEASPD--VYT-----SNCMIDLYSERSMVRQAEEIFEIMKK 732 (856)
Q Consensus 685 ~~~A~~~~~~~~~~~~~p~--~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~ 732 (856)
.+-|+.+|+.+.+....|. ... -...+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 6789999998887433331 111 22345578899999999999999987
No 475
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=31.75 E-value=2.7e+02 Score=24.03 Aligned_cols=46 Identities=7% Similarity=-0.109 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 003020 446 EELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAG 491 (856)
Q Consensus 446 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 491 (856)
.+-++.+..-++.|++...-..++++.+.+++..|..+|+.+..+.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 3444445555566666666666666666666666666666655433
No 476
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.49 E-value=4.7e+02 Score=25.41 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=66.2
Q ss_pred HhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCc---ChhhHH--HHHHHHHcCCCHHHHHHHHHHHHh
Q 003020 183 WFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVP---INSTYG--TLIDVCSKGGLKEEAVCWLERMNE 257 (856)
Q Consensus 183 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 257 (856)
|-.+...+++...-+|.|+--|.-...+.+|...|.+ ..|+.| +..+++ .-|......|+.++|.+.....-.
T Consensus 15 w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P 92 (228)
T KOG2659|consen 15 WEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP 92 (228)
T ss_pred hHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh
Confidence 3333333566666677777666666667777777755 444544 444443 555667899999999998887653
Q ss_pred CCCCccHHHHHHHH----HHHHhcCChhHHHHHHHHH
Q 003020 258 GGMEPDEVTMGIVV----QMYKKAGEFQKAEEFFKKW 290 (856)
Q Consensus 258 ~~~~~~~~~~~~ll----~~~~~~g~~~~A~~~~~~~ 290 (856)
.-+.-|...+-.+. --..+.|..++|+++++.=
T Consensus 93 eiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 93 EILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333432332222 2356788899999988753
No 477
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.49 E-value=7.3e+02 Score=27.19 Aligned_cols=141 Identities=15% Similarity=0.100 Sum_probs=85.1
Q ss_pred HHhcCCHHHHHHHHHHHHh-CCCCCCH--H-----HHHHHHHH-HHHcCCHHHHHHHHHHHHhCC-CCCHHHH--HHHHH
Q 003020 679 YTKVGYLKEAQETYKLLRS-LEASPDV--Y-----TSNCMIDL-YSERSMVRQAEEIFEIMKKKG-DANEFTY--AMMLI 746 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~-~~~~p~~--~-----~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~-~~~~~~~--~~l~~ 746 (856)
-.-.|++.+|++-...|.+ ..-.|.. . ....++.. ++.-+.++.|+.-|..+.+.. ..+..++ ..++-
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAI 412 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Confidence 3457999999998888877 2223441 1 12233333 456789999999988877654 3343333 45677
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC-C--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHH
Q 003020 747 MYKRNGRFEEATRIAKQMRESGLIS-D--------LLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD-----DFTFK 812 (856)
Q Consensus 747 ~~~~~g~~~~A~~~~~~~~~~~~~p-~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~ 812 (856)
.|.+.|+-+.-.++.+. .++.. . ...+...+-....++++.||...+.+-++..-.-| .....
T Consensus 413 ~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 78888776554444443 34331 1 12344455556789999999999998887421111 12234
Q ss_pred HHHHHHHHcC
Q 003020 813 SLGAVLMKCG 822 (856)
Q Consensus 813 ~l~~~~~~~G 822 (856)
.|.+.+.-.|
T Consensus 490 LLs~v~lslg 499 (629)
T KOG2300|consen 490 LLSHVFLSLG 499 (629)
T ss_pred HHHHHHHHhc
Confidence 4455555555
No 478
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=31.17 E-value=1.1e+02 Score=22.49 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=16.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003020 425 DIVSYRTLLYAYSIRRMVCEAEELISEMD 453 (856)
Q Consensus 425 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 453 (856)
|..-.-.++.++...|++++|.+.++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444455666666666666666666554
No 479
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=31.07 E-value=2.4e+02 Score=28.19 Aligned_cols=62 Identities=10% Similarity=-0.023 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.+=..+.+.++++.|....+.....+|.++.-+.--+.+|.+.|.+.-|++-++...+.-|.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 33456778888999999999988888888888888888888999888898888888877665
No 480
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.14 E-value=7.1e+02 Score=30.58 Aligned_cols=124 Identities=12% Similarity=0.031 Sum_probs=74.1
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHhcCCCC----cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----HHHH
Q 003020 498 YSANIDGYGERGHVLEAERAFICCQEGKKL----TVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKC----SYNS 569 (856)
Q Consensus 498 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ 569 (856)
|...++.+-+.+..+.+.++-..+.+.-++ -+.+++.+.+.....|.+-+|...+-+ .||.. ....
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRq 1059 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQ 1059 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHH
Confidence 344567777788888888777666654433 356778888888888888887765543 24433 4555
Q ss_pred HHHHHHcCCChH------------HHHH-HHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHH-HHHHHHH
Q 003020 570 LIQILAGADLPH------------MAKR-YLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEE-VYKDMIR 627 (856)
Q Consensus 570 ll~~~~~~~~~~------------~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 627 (856)
++..++..|.++ +... +++..-+.........|+.|-..+...+++.+|-. +|+...+
T Consensus 1060 lvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1060 LVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMR 1131 (1480)
T ss_pred HHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 666666666554 3333 33333333222333446666666777788877644 4554444
No 481
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=30.14 E-value=2.9e+02 Score=22.13 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 003020 339 EASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMA 410 (856)
Q Consensus 339 ~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 410 (856)
.+.++++.+.+.|+- +......+-.+-...|+.+.|++++..+. .| ...|...++++...|.-.-|
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 345667777777654 33333443333335577777777777776 42 23456666776666654444
No 482
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.97 E-value=2.3e+02 Score=25.40 Aligned_cols=42 Identities=19% Similarity=0.171 Sum_probs=17.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003020 745 LIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVD 786 (856)
Q Consensus 745 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 786 (856)
+..+...++.-.|..+++++.+.+|..++.|-+.-+..+...
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 333333333344444444444444443333333333333333
No 483
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=29.44 E-value=56 Score=28.38 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=24.5
Q ss_pred HHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHH
Q 003020 168 LKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTL 204 (856)
Q Consensus 168 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 204 (856)
++.-|.-.+|..+|.+|+..| .+||. |+.|+...
T Consensus 105 lR~ygsk~DaY~VF~kML~~G-~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERG-NPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCC-CCCcc--HHHHHHHh
Confidence 344566667899999999888 56664 77777653
No 484
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=29.14 E-value=1.1e+03 Score=28.43 Aligned_cols=40 Identities=8% Similarity=0.009 Sum_probs=17.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHcC
Q 003020 713 LYSERSMVRQAEEIFEIMKKKG--DANEFTYAMMLIMYKRNG 752 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 752 (856)
-+...|++..|.+++.++.+.. .++...|-.++..+...|
T Consensus 1240 ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1240 HAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 3334455555555555554422 223333333444444444
No 485
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.78 E-value=1.1e+02 Score=25.81 Aligned_cols=27 Identities=19% Similarity=0.508 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 775 SYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 775 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
-|..++..|...|.+++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366666777777777777777776655
No 486
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.31 E-value=1.2e+03 Score=28.78 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HH
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESAGLPPN----AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVY----TS 707 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~ 707 (856)
-|...++.+-+.+..+.+.++-..+++. ++++ ..+++.+.+.....|.+-+|...+ .+ .||.. ..
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~~---npdserrrdcL 1057 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---LR---NPDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---Hc---CCcHHHHHHHH
Confidence 3556667777777777777777666553 2222 345667777777777777775543 22 24432 34
Q ss_pred HHHHHHHHHcCCHH
Q 003020 708 NCMIDLYSERSMVR 721 (856)
Q Consensus 708 ~~l~~~~~~~g~~~ 721 (856)
..++-.++.+|+++
T Consensus 1058 RqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHhccchH
Confidence 45555666666543
No 487
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=27.94 E-value=2.1e+02 Score=19.77 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=19.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003020 784 AVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLG 815 (856)
Q Consensus 784 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 815 (856)
.+.|-.+++..++++|.+.|+.-++..+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 45566666666666666666666666655554
No 488
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=27.90 E-value=1.3e+02 Score=30.55 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=31.7
Q ss_pred CCcChhh-HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHH
Q 003020 225 IVPINST-YGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTM 267 (856)
Q Consensus 225 ~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 267 (856)
+.|+..+ |+..|....+.|++++|+.+++++.+.|..--..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3356655 568888888999999999999999888865433333
No 489
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.34 E-value=1e+03 Score=27.65 Aligned_cols=122 Identities=13% Similarity=0.085 Sum_probs=75.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003020 642 NAFADVGNVKQAQSYFDAMESAGLPPNA--VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSM 719 (856)
Q Consensus 642 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 719 (856)
-++.--|+.++|-.+.++|.... .|-. .-.-++..+|+-.|+.....+++.-... ++..|+..+..+.-++.-..+
T Consensus 509 iaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs-D~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 509 IALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS-DVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc-ccchHHHHHHHHHheeeEecC
Confidence 34555677788888888887643 2211 1233456677778876655555544332 334555555555556666778
Q ss_pred HHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 720 VRQAEEIFEIMKKKGDANEF--TYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
.+....+.+-+.+..-|... +-..|+-+|+-.|+ .+|+.+++-|..
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 88888888777766544433 33455666666664 678888888876
No 490
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=27.24 E-value=7e+02 Score=25.61 Aligned_cols=165 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003020 570 LIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGN 649 (856)
Q Consensus 570 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 649 (856)
++...-+..++.+-++.-...++.+ ..-.-..++-+-...--..+|.++|++.++.+-. .|.+..+
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN---~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~e~-----------~yr~sqq 255 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEIN---NECATAYVLLAEEEATTIVDAERLFKQALKAGET-----------IYRQSQQ 255 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcC---chhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHH-----------HHhhHHH
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003020 650 VKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS-LEASPDVYTSNCMIDLYSERSMVRQAEEIFE 728 (856)
Q Consensus 650 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 728 (856)
.+.--...+.+.+.+...-...-..+..+-.+.|+..+|.+.++.+.+ ..+..-......++.++....-+.+...++-
T Consensus 256 ~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 256 CQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhCCCCCHHHHHHHHHHH
Q 003020 729 IMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 729 ~~~~~~~~~~~~~~~l~~~~ 748 (856)
+--+...|...+...-...+
T Consensus 336 kYDdislPkSA~icYTaALL 355 (556)
T KOG3807|consen 336 KYDDISLPKSAAICYTAALL 355 (556)
T ss_pred hhccccCcchHHHHHHHHHH
No 491
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=26.85 E-value=1.6e+02 Score=29.59 Aligned_cols=53 Identities=6% Similarity=0.097 Sum_probs=45.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 748 YKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
..+.|+.++|.++|+.++...|. ++.....++.......+.-+|-.+|-+++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 34789999999999999999988 888888888888888888888888877765
No 492
>PRK12798 chemotaxis protein; Reviewed
Probab=26.78 E-value=8.2e+02 Score=26.30 Aligned_cols=200 Identities=13% Similarity=0.018 Sum_probs=110.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH-HHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCc
Q 003020 241 KGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQM-YKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSL 319 (856)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (856)
-.|+-++|.+.+..+.-...++....+-.|+.+ .....+..+|+.+|+...-. -|+.-.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--------------------aPGTLv 183 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--------------------APGTLV 183 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--------------------CCchHH
Confidence 468888888888888777677777777777765 34456788888888876421 111111
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHhHH-HHHHHHhcCC---CHHHHHHHHHHHHhCCCCCCHHHH
Q 003020 320 SSYTYNTLIDTYGKAGQLKEASETFAQMLRE-GIVPTTVTFN-TMIHIYGNND---QLAEVDSLIKKMEELHCPPDTRTY 394 (856)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~-~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 394 (856)
.......-|-...+.|+.+++..+-.+..++ ...|=..-|- .+..++.+.+ ..+....++..|.. ..-...|
T Consensus 184 EEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lY 260 (421)
T PRK12798 184 EEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELY 260 (421)
T ss_pred HHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHH
Confidence 1223333455567788888877666555543 1112111221 1222222322 23333344443321 1234577
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHh-HHHHHHH--HHhcCCHHHHHHHHHHHhcCCCCCCHhh
Q 003020 395 NILIFLHAKNDKISMASRYFWKMKEANLEPDIVS-YRTLLYA--YSIRRMVCEAEELISEMDGGGLEIDEYT 463 (856)
Q Consensus 395 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 463 (856)
..+...-.-.|+.+-|.-.-++.+......+... -..|-.+ -.-..+++++.+.+..+....+.+....
T Consensus 261 L~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~ 332 (421)
T PRK12798 261 LRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRA 332 (421)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHH
Confidence 7777888888998888887777765432222111 1111111 1234568888888888776666554443
No 493
>PHA02875 ankyrin repeat protein; Provisional
Probab=26.70 E-value=7.7e+02 Score=26.59 Aligned_cols=200 Identities=14% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCcChhh--HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHH--HHHHHHHHHHhcCChhHHHHHHHH
Q 003020 214 QSLWDEMSVKGIVPINST--YGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEV--TMGIVVQMYKKAGEFQKAEEFFKK 289 (856)
Q Consensus 214 ~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~ 289 (856)
.++++.+++.|..|+... -.+.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+.+..+++.
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Q ss_pred HhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHH--HHHHHHh
Q 003020 290 WSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFN--TMIHIYG 367 (856)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~--~ll~~~~ 367 (856)
-. ......+..-.+.|..+..... .++++.+++.|..|+..... +.+...+
T Consensus 91 ~~----------------------~~~~~~~~~g~tpL~~A~~~~~-----~~iv~~Ll~~gad~~~~~~~g~tpLh~A~ 143 (413)
T PHA02875 91 GK----------------------FADDVFYKDGMTPLHLATILKK-----LDIMKLLIARGADPDIPNTDKFSPLHLAV 143 (413)
T ss_pred CC----------------------cccccccCCCCCHHHHHHHhCC-----HHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHH---HHHHHHHhcCCHHH
Q 003020 368 NNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYR---TLLYAYSIRRMVCE 444 (856)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~---~ll~~~~~~g~~~~ 444 (856)
..|+.+-+..+++.-...+ ..|..-.+.+..+..... .++.+.+.+.|..++...-. +++...+..|+.+-
T Consensus 144 ~~~~~~~v~~Ll~~g~~~~-~~d~~g~TpL~~A~~~g~-----~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i 217 (413)
T PHA02875 144 MMGDIKGIELLIDHKACLD-IEDCCGCTPLIIAMAKGD-----IAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI 217 (413)
T ss_pred HcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCC-----HHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH
Q ss_pred HHHHHH
Q 003020 445 AEELIS 450 (856)
Q Consensus 445 A~~~~~ 450 (856)
+.-+++
T Consensus 218 v~~Ll~ 223 (413)
T PHA02875 218 VRLFIK 223 (413)
T ss_pred HHHHHH
No 494
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=26.66 E-value=1.2e+02 Score=30.72 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=31.5
Q ss_pred cCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 003020 319 LSSYT-YNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNT 361 (856)
Q Consensus 319 ~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 361 (856)
++..+ ||..|....+.|++++|+.++++..+.|+.--..+|..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 34444 57888889999999999999999988887643344433
No 495
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=26.30 E-value=4.3e+02 Score=22.92 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 003020 757 ATRIAKQMRESGLISDL-LSYNNVLGLYAVDGRFKDVIGTFK 797 (856)
Q Consensus 757 A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 797 (856)
...+|+.|...++-... ..|...+..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555544443222 334444555555555555555544
No 496
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.16 E-value=1.2e+03 Score=27.87 Aligned_cols=358 Identities=12% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCC
Q 003020 237 DVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVN 316 (856)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (856)
+.|...|+|+.|++.-+.-.+. -..++..-...|...+++..|.++|.+..
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~----le~Vl~~qAdf~f~~k~y~~AA~~yA~t~------------------------- 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDA----LETVLLKQADFLFQDKEYLRAAEIYAETL------------------------- 416 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHhh-------------------------
Q ss_pred CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh------cCCCHH---------------HH
Q 003020 317 GSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYG------NNDQLA---------------EV 375 (856)
Q Consensus 317 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~------~~g~~~---------------~A 375 (856)
..+..+.--|....+.+ ++..|-.-+-..++|...+-..++..+. +.++++ ..
T Consensus 417 -----~~FEEVaLKFl~~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~ 490 (911)
T KOG2034|consen 417 -----SSFEEVALKFLEINQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEV 490 (911)
T ss_pred -----hhHHHHHHHHHhcCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHH
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 003020 376 DSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGG 455 (856)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 455 (856)
.+-|...... ..+.....+........|+.++...+-.-|.+ |..++..+.+++.+++|++++..-.
T Consensus 491 ~re~~~~~~~--~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~-- 557 (911)
T KOG2034|consen 491 QREFSKFLVL--HKDELNRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQR-- 557 (911)
T ss_pred HHHHHHHHHh--hHHhhhHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcc--
Q ss_pred CCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCc-HHHHHH
Q 003020 456 GLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLT-VLVFNV 534 (856)
Q Consensus 456 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 534 (856)
++..+....-.....--.+-...+...-....+.-..+...+-..-........+.+..+-+....... +.++|.
T Consensus 558 ----~~el~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ 633 (911)
T KOG2034|consen 558 ----NPELFYKYAPELITHSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNS 633 (911)
T ss_pred ----chhhHHHhhhHHHhcCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHH
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 003020 535 MVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQ 614 (856)
Q Consensus 535 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 614 (856)
++..|++..+-+.-..+-..+...+. ...-....++.|.+.+....+..++..|.- |...+..-.+..
T Consensus 634 ll~lya~~~~~~ll~~le~~~~~~~~--~~YDl~~alRlc~~~~~~ra~V~l~~~l~l---------~~~aVdlAL~~d- 701 (911)
T KOG2034|consen 634 LLHLYAKHERDDLLLYLEIIKFMKSR--VHYDLDYALRLCLKFKKTRACVFLLCMLNL---------FEDAVDLALQFD- 701 (911)
T ss_pred HHHHhhcCCccchHHHHHHHhhcccc--ceecHHHHHHHHHHhCccceeeeHHHHHHH---------HHHHHHHHhhcC-
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Q 003020 615 LEMAEEVYKDMIRFNVEPDVVVYGVLINAFAD-VGNVKQAQSYFDA 659 (856)
Q Consensus 615 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~ 659 (856)
.+.|...-....... ..--..|-.+..-+.+ ..+..+|+.++..
T Consensus 702 ~dlak~~A~~~ee~e-~lrKkLWLkIAkh~v~~~~~ikk~i~~Lk~ 746 (911)
T KOG2034|consen 702 IDLAKVIANDPEEDE-DLRKKLWLKIAKHVVKQENDIKKAIRFLKE 746 (911)
T ss_pred HHHHhhhhcChhhHH-HHHHHHHHHHHHHHHHhhccHHHHHHHhcc
No 497
>PRK09857 putative transposase; Provisional
Probab=26.07 E-value=4.8e+02 Score=26.68 Aligned_cols=57 Identities=11% Similarity=0.060 Sum_probs=31.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003020 750 RNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD 807 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 807 (856)
..++.++-.++++.+.+..+. .....-+++.-+.+.|.-++++++.++|+..|+.++
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~~-~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAERSPK-HKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hccccchHHHHHHHHHHhCcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 345555555555555444322 333344555555666666667777777777776655
No 498
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=25.60 E-value=4.3e+02 Score=32.11 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=58.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 748 YKRNGRFEEATRIAKQMRESGLISDL-LSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
+.....+.+++.+|+.|...++.+.. ..|......|.+.+.|.+|..+|+.-++..-.|-......+.....+.|
T Consensus 88 ~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~ 163 (974)
T KOG1166|consen 88 LELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLM 163 (974)
T ss_pred HHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 44666788999999999988777554 5677888888999999999999999888777787776666666666555
No 499
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=25.47 E-value=1.4e+02 Score=19.42 Aligned_cols=28 Identities=11% Similarity=0.232 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 774 LSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 774 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
.+|..|+..-...+++++|+.=|+++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567788888888888888888887766
No 500
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=25.29 E-value=1.5e+02 Score=22.99 Aligned_cols=45 Identities=11% Similarity=0.246 Sum_probs=28.5
Q ss_pred ccccccHHHHhhHhhhhcChhHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHH
Q 003020 142 LDTVKDLDEALKPWAENLSNKERSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLG 205 (856)
Q Consensus 142 ~~~~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 205 (856)
+...|++++|+..|.+ |.+.+-.+.+..+..+.-..|...+.-|.
T Consensus 16 ~D~~gr~~eAi~~Y~~-------------------aIe~L~q~~~~~pD~~~k~~yr~ki~eY~ 60 (75)
T cd02682 16 AEKEGNAEDAITNYKK-------------------AIEVLSQIVKNYPDSPTRLIYEQMINEYK 60 (75)
T ss_pred HHhcCCHHHHHHHHHH-------------------HHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 4566777777777766 77777777665433333455666666663
Done!