Query 003020
Match_columns 856
No_of_seqs 768 out of 3893
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 10:21:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.4E-40 4.9E-45 383.7 44.0 521 169-784 64-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.2E-39 4.1E-44 376.0 43.6 491 164-748 90-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-28 6.2E-33 265.8 48.1 184 600-787 204-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-28 5E-33 266.5 47.0 381 433-822 6-387 (388)
5 2gw1_A Mitochondrial precursor 100.0 4.4E-25 1.5E-29 249.0 41.6 454 321-810 6-484 (514)
6 2gw1_A Mitochondrial precursor 99.9 1.5E-24 5.1E-29 244.7 39.7 426 356-822 6-463 (514)
7 4g26_A Pentatricopeptide repea 99.9 4.5E-26 1.5E-30 250.5 24.3 187 195-438 27-222 (501)
8 4g26_A Pentatricopeptide repea 99.9 9E-26 3.1E-30 248.1 25.8 189 529-717 26-223 (501)
9 3fp2_A TPR repeat-containing p 99.9 3E-23 1E-27 235.4 43.2 435 320-770 24-494 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 4.5E-23 1.5E-27 228.3 41.1 362 409-801 10-409 (450)
11 3fp2_A TPR repeat-containing p 99.9 4.4E-23 1.5E-27 234.1 41.0 438 356-809 25-496 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 9.8E-23 3.3E-27 225.5 41.1 390 373-792 9-444 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 1.9E-20 6.6E-25 199.9 39.1 326 463-819 5-351 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 5.5E-20 1.9E-24 196.4 40.0 286 496-822 4-320 (359)
15 1xi4_A Clathrin heavy chain; a 99.9 5.4E-17 1.8E-21 187.5 60.5 639 93-822 724-1415(1630)
16 1xi4_A Clathrin heavy chain; a 99.9 2.6E-16 8.9E-21 182.0 65.6 588 130-819 922-1574(1630)
17 2xm6_A Protein corresponding t 99.9 9.1E-18 3.1E-22 187.3 49.8 339 404-769 56-434 (490)
18 3hym_B Cell division cycle pro 99.9 2E-19 6.8E-24 189.6 33.1 290 461-789 22-321 (330)
19 2xm6_A Protein corresponding t 99.9 6.1E-17 2.1E-21 180.6 52.2 366 410-805 26-435 (490)
20 2ooe_A Cleavage stimulation fa 99.9 2.3E-17 7.8E-22 186.1 48.4 429 344-802 2-492 (530)
21 2ooe_A Cleavage stimulation fa 99.8 4.3E-17 1.5E-21 183.8 46.6 429 181-663 2-492 (530)
22 3hym_B Cell division cycle pro 99.8 1.4E-18 4.7E-23 183.2 31.3 289 526-822 19-319 (330)
23 1fch_A Peroxisomal targeting s 99.8 3.1E-19 1.1E-23 191.4 26.2 307 471-801 35-358 (368)
24 4g1t_A Interferon-induced prot 99.8 2.5E-18 8.7E-23 191.2 33.4 382 356-802 51-459 (472)
25 4g1t_A Interferon-induced prot 99.8 4.5E-18 1.5E-22 189.2 34.4 369 390-822 50-444 (472)
26 1fch_A Peroxisomal targeting s 99.8 9.4E-19 3.2E-23 187.7 27.1 309 435-766 34-358 (368)
27 4eqf_A PEX5-related protein; a 99.8 1.1E-18 3.8E-23 186.9 22.1 264 497-798 67-352 (365)
28 4eqf_A PEX5-related protein; a 99.8 2.3E-18 7.9E-23 184.4 21.9 254 565-822 66-341 (365)
29 1b89_A Protein (clathrin heavy 99.8 1.6E-18 5.5E-23 180.6 18.4 387 164-656 9-410 (449)
30 3mkr_A Coatomer subunit epsilo 99.8 3.1E-17 1.1E-21 168.2 27.3 252 541-809 11-269 (291)
31 1b89_A Protein (clathrin heavy 99.8 1.7E-17 5.8E-22 172.9 24.5 237 206-505 15-251 (449)
32 3cv0_A Peroxisome targeting si 99.8 2.5E-17 8.5E-22 173.2 26.2 280 496-801 22-314 (327)
33 3mkr_A Coatomer subunit epsilo 99.8 1.7E-16 5.8E-21 162.8 29.8 275 504-796 8-288 (291)
34 3cv0_A Peroxisome targeting si 99.8 6.8E-17 2.3E-21 169.8 25.8 281 460-766 20-314 (327)
35 3uq3_A Heat shock protein STI1 99.7 2E-15 7E-20 152.4 27.1 224 566-802 7-236 (258)
36 2pl2_A Hypothetical conserved 99.7 8.7E-16 3E-20 150.3 23.3 200 596-800 2-212 (217)
37 3uq3_A Heat shock protein STI1 99.7 2E-15 6.8E-20 152.4 25.4 239 529-781 5-255 (258)
38 3e4b_A ALGK; tetratricopeptide 99.7 1.6E-15 5.6E-20 166.1 23.9 346 397-803 9-388 (452)
39 2h6f_A Protein farnesyltransfe 99.7 1.1E-14 3.8E-19 154.2 26.2 246 566-819 99-364 (382)
40 3u4t_A TPR repeat-containing p 99.7 1.5E-14 5.3E-19 147.3 25.2 246 567-817 6-264 (272)
41 2ho1_A Type 4 fimbrial biogene 99.7 3.7E-14 1.3E-18 142.6 27.0 209 599-812 37-246 (252)
42 2pl2_A Hypothetical conserved 99.7 1.1E-14 3.7E-19 142.4 22.1 199 562-765 3-212 (217)
43 2vq2_A PILW, putative fimbrial 99.6 8.9E-14 3.1E-18 136.9 27.7 212 598-813 7-220 (225)
44 2h6f_A Protein farnesyltransfe 99.6 2.3E-14 8E-19 151.8 24.9 254 526-786 94-366 (382)
45 3u4t_A TPR repeat-containing p 99.6 3.5E-14 1.2E-18 144.6 25.5 253 497-786 5-268 (272)
46 3e4b_A ALGK; tetratricopeptide 99.6 2.1E-14 7.3E-19 157.3 25.1 347 270-699 9-388 (452)
47 1ouv_A Conserved hypothetical 99.6 4.8E-13 1.6E-17 136.3 33.6 223 564-803 6-252 (273)
48 2q7f_A YRRB protein; TPR, prot 99.6 2.3E-14 7.8E-19 143.2 22.7 206 598-809 22-227 (243)
49 1ouv_A Conserved hypothetical 99.6 8E-13 2.7E-17 134.6 33.1 227 527-770 4-254 (273)
50 3vtx_A MAMA; tetratricopeptide 99.6 7.2E-14 2.5E-18 132.8 23.5 174 633-811 4-177 (184)
51 3spa_A Mtrpol, DNA-directed RN 99.6 7.5E-16 2.6E-20 172.9 10.5 151 320-475 126-286 (1134)
52 2q7f_A YRRB protein; TPR, prot 99.6 4.5E-14 1.5E-18 141.0 21.7 215 566-785 25-239 (243)
53 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.2E-14 1.8E-18 143.5 21.0 245 542-796 18-269 (275)
54 2ho1_A Type 4 fimbrial biogene 99.6 6.6E-13 2.2E-17 133.4 28.4 207 566-776 39-246 (252)
55 3sf4_A G-protein-signaling mod 99.6 5.8E-14 2E-18 152.4 21.9 292 530-822 10-361 (406)
56 4e6h_A MRNA 3'-END-processing 99.6 2.9E-11 9.8E-16 136.6 43.5 459 336-822 47-588 (679)
57 4e6h_A MRNA 3'-END-processing 99.6 3.2E-11 1.1E-15 136.2 43.7 465 176-699 50-571 (679)
58 3spa_A Mtrpol, DNA-directed RN 99.6 3.7E-15 1.3E-19 167.4 11.4 118 599-716 127-248 (1134)
59 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.8E-13 6.2E-18 139.5 22.4 227 575-808 16-248 (275)
60 2vq2_A PILW, putative fimbrial 99.6 1.4E-12 4.9E-17 128.1 27.8 208 566-777 10-220 (225)
61 4a1s_A PINS, partner of inscut 99.6 6E-14 2E-18 152.7 18.0 270 532-802 51-372 (411)
62 3sf4_A G-protein-signaling mod 99.5 4E-14 1.4E-18 153.6 15.6 301 461-791 9-365 (406)
63 3ro2_A PINS homolog, G-protein 99.5 1.3E-13 4.4E-18 145.1 18.8 268 534-802 10-332 (338)
64 4abn_A Tetratricopeptide repea 99.5 7.7E-13 2.6E-17 145.9 24.9 201 615-822 84-306 (474)
65 3vtx_A MAMA; tetratricopeptide 99.5 1.5E-12 5.1E-17 123.6 23.0 170 598-770 4-173 (184)
66 4abn_A Tetratricopeptide repea 99.5 4.3E-13 1.5E-17 147.9 21.2 213 581-799 85-318 (474)
67 4a1s_A PINS, partner of inscut 99.5 1.8E-13 6.1E-18 148.9 16.1 238 531-768 88-373 (411)
68 2ond_A Cleavage stimulation fa 99.5 1.8E-11 6.2E-16 126.9 29.9 218 581-802 33-270 (308)
69 3ro2_A PINS homolog, G-protein 99.5 6.8E-13 2.3E-17 139.5 18.7 268 502-769 12-334 (338)
70 4gyw_A UDP-N-acetylglucosamine 99.4 2.8E-12 9.7E-17 146.8 21.7 166 633-801 8-173 (723)
71 3nf1_A KLC 1, kinesin light ch 99.4 7.2E-13 2.5E-17 137.7 14.9 247 526-801 24-306 (311)
72 3ulq_A Response regulator aspa 99.4 5.4E-12 1.8E-16 135.6 22.1 229 570-801 109-367 (383)
73 2ond_A Cleavage stimulation fa 99.4 7.9E-11 2.7E-15 122.0 29.9 221 546-770 33-273 (308)
74 3as5_A MAMA; tetratricopeptide 99.4 1.4E-11 4.6E-16 116.8 21.6 165 635-802 9-173 (186)
75 4i17_A Hypothetical protein; T 99.4 1.7E-11 5.7E-16 120.9 22.7 202 597-810 5-215 (228)
76 3nf1_A KLC 1, kinesin light ch 99.4 3.6E-13 1.2E-17 140.0 11.1 250 492-769 24-309 (311)
77 3ulq_A Response regulator aspa 99.4 1.8E-11 6.2E-16 131.4 23.0 299 331-662 22-367 (383)
78 4i17_A Hypothetical protein; T 99.4 2.8E-11 9.7E-16 119.3 21.6 157 632-789 5-169 (228)
79 1hz4_A MALT regulatory protein 99.4 1.7E-10 5.7E-15 123.4 28.4 269 533-801 18-321 (373)
80 3as5_A MAMA; tetratricopeptide 99.3 6.4E-11 2.2E-15 112.1 20.2 168 600-770 9-176 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.3 4.2E-11 1.4E-15 137.1 21.1 167 598-767 8-174 (723)
82 3q15_A PSP28, response regulat 99.3 1.5E-10 5.1E-15 124.0 23.1 196 602-801 144-364 (378)
83 3q15_A PSP28, response regulat 99.3 4.7E-10 1.6E-14 120.0 25.3 165 324-489 104-289 (378)
84 1hz4_A MALT regulatory protein 99.3 1E-09 3.5E-14 117.2 27.9 167 567-733 138-322 (373)
85 3edt_B KLC 2, kinesin light ch 99.3 2.3E-11 7.8E-16 124.2 14.1 227 575-802 12-281 (283)
86 3urz_A Uncharacterized protein 99.2 2.3E-10 7.9E-15 110.6 18.5 139 673-816 58-198 (208)
87 3qky_A Outer membrane assembly 99.2 5.1E-10 1.7E-14 112.8 20.6 172 599-808 15-228 (261)
88 2uy1_A Cleavage stimulation fa 99.2 8.3E-09 2.8E-13 113.3 31.2 344 172-556 28-411 (493)
89 4ga2_A E3 SUMO-protein ligase 99.2 3.1E-11 1E-15 109.8 9.5 143 675-822 3-148 (150)
90 1qqe_A Vesicular transport pro 99.2 3.4E-10 1.2E-14 116.1 18.2 166 636-801 79-268 (292)
91 3edt_B KLC 2, kinesin light ch 99.2 1.1E-10 3.9E-15 119.0 14.3 158 177-350 27-198 (283)
92 4ga2_A E3 SUMO-protein ligase 99.2 6.5E-11 2.2E-15 107.6 10.4 146 640-788 3-149 (150)
93 1qqe_A Vesicular transport pro 99.2 2.1E-10 7.1E-15 117.7 15.4 196 571-766 44-268 (292)
94 2fo7_A Synthetic consensus TPR 99.2 1.1E-09 3.8E-14 97.1 18.0 130 671-802 3-132 (136)
95 2r5s_A Uncharacterized protein 99.2 3.1E-10 1.1E-14 106.4 13.8 162 637-801 9-172 (176)
96 3dra_A Protein farnesyltransfe 99.2 1.2E-08 4.2E-13 103.2 26.4 229 580-814 49-299 (306)
97 2pzi_A Probable serine/threoni 99.2 2.4E-10 8.2E-15 131.8 15.8 174 610-788 402-583 (681)
98 3qky_A Outer membrane assembly 99.2 2.1E-09 7.2E-14 108.2 20.7 211 562-792 13-251 (261)
99 3mv2_B Coatomer subunit epsilo 99.1 4.9E-09 1.7E-13 104.7 22.5 177 618-801 85-281 (310)
100 2yhc_A BAMD, UPF0169 lipoprote 99.1 4.3E-09 1.5E-13 103.1 21.3 186 598-802 3-213 (225)
101 3mv2_B Coatomer subunit epsilo 99.1 1.5E-08 5.2E-13 101.2 25.0 223 531-775 47-289 (310)
102 3qou_A Protein YBBN; thioredox 99.1 1.1E-09 3.8E-14 111.8 17.2 168 631-801 114-283 (287)
103 3rjv_A Putative SEL1 repeat pr 99.1 4.6E-09 1.6E-13 101.7 20.5 176 617-804 4-199 (212)
104 2fo7_A Synthetic consensus TPR 99.1 4.4E-09 1.5E-13 93.1 18.0 133 636-770 3-135 (136)
105 2pzi_A Probable serine/threoni 99.1 6.4E-10 2.2E-14 128.3 15.5 172 645-822 402-582 (681)
106 3gyz_A Chaperone protein IPGC; 99.1 1.1E-09 3.9E-14 98.7 13.3 106 701-809 32-138 (151)
107 4gco_A Protein STI-1; structur 99.1 2.7E-09 9.3E-14 93.3 14.7 108 705-815 14-122 (126)
108 2vsy_A XCC0866; transferase, g 99.1 4E-09 1.4E-13 119.6 19.6 165 612-780 2-169 (568)
109 3rjv_A Putative SEL1 repeat pr 99.1 3.3E-08 1.1E-12 95.6 23.3 177 582-769 4-199 (212)
110 2uy1_A Cleavage stimulation fa 99.0 3.4E-07 1.2E-11 100.4 33.4 378 368-801 6-412 (493)
111 3dra_A Protein farnesyltransfe 99.0 1.3E-07 4.3E-12 95.8 27.2 229 546-781 50-301 (306)
112 4gco_A Protein STI-1; structur 99.0 8.6E-09 2.9E-13 90.1 15.7 111 670-782 14-124 (126)
113 2yhc_A BAMD, UPF0169 lipoprote 99.0 3E-08 1E-12 97.0 21.3 189 563-770 3-216 (225)
114 2vsy_A XCC0866; transferase, g 99.0 9.4E-09 3.2E-13 116.5 18.7 165 577-745 2-169 (568)
115 1hh8_A P67PHOX, NCF-2, neutrop 99.0 2.3E-08 7.8E-13 96.9 18.9 125 672-801 9-149 (213)
116 2ifu_A Gamma-SNAP; membrane fu 99.0 3.9E-09 1.3E-13 109.0 14.0 158 607-765 44-222 (307)
117 2ifu_A Gamma-SNAP; membrane fu 98.9 6.9E-09 2.4E-13 107.1 14.8 157 643-800 45-222 (307)
118 3qou_A Protein YBBN; thioredox 98.9 1.6E-08 5.5E-13 103.1 17.2 167 596-766 114-283 (287)
119 3urz_A Uncharacterized protein 98.9 1.6E-08 5.5E-13 97.5 16.3 57 501-557 60-116 (208)
120 2vgx_A Chaperone SYCD; alterna 98.9 3.4E-09 1.1E-13 95.8 10.2 109 691-802 9-118 (148)
121 2qfc_A PLCR protein; TPR, HTH, 98.9 1.9E-07 6.5E-12 95.6 24.4 166 635-801 76-265 (293)
122 3u3w_A Transcriptional activat 98.9 1.3E-07 4.3E-12 96.9 22.9 162 640-801 81-265 (293)
123 1a17_A Serine/threonine protei 98.9 4.2E-08 1.4E-12 90.6 17.5 130 670-801 14-145 (166)
124 3q7a_A Farnesyltransferase alp 98.9 7E-07 2.4E-11 91.2 26.7 226 579-809 69-337 (349)
125 2r5s_A Uncharacterized protein 98.9 1.4E-08 4.9E-13 95.0 13.3 64 495-558 6-69 (176)
126 4gcn_A Protein STI-1; structur 98.9 2.6E-08 9E-13 87.1 14.0 108 705-814 9-122 (127)
127 2e2e_A Formate-dependent nitri 98.9 1.6E-08 5.6E-13 94.7 13.3 121 680-802 21-144 (177)
128 1p5q_A FKBP52, FK506-binding p 98.9 4.9E-08 1.7E-12 101.9 17.5 131 670-801 148-293 (336)
129 3upv_A Heat shock protein STI1 98.9 4.8E-08 1.7E-12 85.4 14.8 98 704-802 4-101 (126)
130 1na0_A Designed protein CTPR3; 98.8 1.3E-07 4.4E-12 82.1 17.0 113 705-820 10-123 (125)
131 2vyi_A SGTA protein; chaperone 98.8 5.2E-08 1.8E-12 85.5 14.6 119 669-789 12-130 (131)
132 1na0_A Designed protein CTPR3; 98.8 1.5E-07 5E-12 81.7 16.9 117 669-787 9-125 (125)
133 3u3w_A Transcriptional activat 98.8 4.2E-07 1.4E-11 93.0 22.9 164 604-767 80-266 (293)
134 2lni_A Stress-induced-phosphop 98.8 6.7E-08 2.3E-12 85.2 14.6 116 670-787 17-132 (133)
135 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.9E-07 6.4E-12 90.4 19.0 129 637-770 9-153 (213)
136 2xcb_A PCRH, regulatory protei 98.8 4E-08 1.4E-12 88.1 12.4 98 704-802 18-115 (142)
137 2lni_A Stress-induced-phosphop 98.8 9.2E-08 3.1E-12 84.3 14.3 118 702-822 14-132 (133)
138 2vyi_A SGTA protein; chaperone 98.8 2E-07 6.8E-12 81.7 16.4 117 703-822 11-128 (131)
139 3dss_A Geranylgeranyl transfer 98.8 5.5E-06 1.9E-10 84.2 28.8 195 615-815 90-316 (331)
140 2vgx_A Chaperone SYCD; alterna 98.8 2.1E-08 7.2E-13 90.5 9.7 113 656-770 9-121 (148)
141 3dss_A Geranylgeranyl transfer 98.8 1.7E-06 5.7E-11 88.1 24.1 193 610-808 40-271 (331)
142 1hxi_A PEX5, peroxisome target 98.8 6.4E-08 2.2E-12 83.8 11.8 98 707-807 20-117 (121)
143 3gyz_A Chaperone protein IPGC; 98.7 6.3E-08 2.1E-12 87.2 12.0 102 668-770 35-136 (151)
144 3upv_A Heat shock protein STI1 98.7 1.7E-07 5.9E-12 81.8 14.4 113 669-783 4-122 (126)
145 3sz7_A HSC70 cochaperone (SGT) 98.7 2.3E-07 7.8E-12 85.5 15.7 97 704-801 11-107 (164)
146 2c2l_A CHIP, carboxy terminus 98.7 4.4E-08 1.5E-12 99.4 11.6 195 598-801 3-198 (281)
147 1elw_A TPR1-domain of HOP; HOP 98.7 3.6E-07 1.2E-11 78.3 15.9 98 704-802 4-101 (118)
148 4f3v_A ESX-1 secretion system 98.7 4E-07 1.4E-11 89.8 17.9 199 611-814 18-247 (282)
149 2fbn_A 70 kDa peptidylprolyl i 98.7 2.2E-07 7.7E-12 88.7 15.4 131 671-802 40-186 (198)
150 1a17_A Serine/threonine protei 98.7 4.9E-07 1.7E-11 83.2 17.1 130 635-766 14-145 (166)
151 3q49_B STIP1 homology and U bo 98.7 3.2E-07 1.1E-11 81.4 15.0 99 702-801 7-105 (137)
152 3gw4_A Uncharacterized protein 98.7 1.6E-07 5.4E-12 90.0 13.9 155 646-801 4-175 (203)
153 3q7a_A Farnesyltransferase alp 98.7 4.9E-06 1.7E-10 84.9 25.0 208 611-822 66-316 (349)
154 2xcb_A PCRH, regulatory protei 98.7 6.7E-08 2.3E-12 86.6 10.2 102 668-770 17-118 (142)
155 2qfc_A PLCR protein; TPR, HTH, 98.7 2.8E-06 9.5E-11 86.8 23.4 167 601-767 77-266 (293)
156 2e2e_A Formate-dependent nitri 98.7 1.8E-07 6.1E-12 87.5 13.0 124 645-770 21-147 (177)
157 1elw_A TPR1-domain of HOP; HOP 98.7 7E-07 2.4E-11 76.4 15.8 112 669-782 4-115 (118)
158 1elr_A TPR2A-domain of HOP; HO 98.7 3E-07 1E-11 80.6 13.4 112 705-818 5-122 (131)
159 4f3v_A ESX-1 secretion system 98.6 7E-07 2.4E-11 88.0 16.2 126 535-663 108-237 (282)
160 2dba_A Smooth muscle cell asso 98.6 1.1E-06 3.7E-11 79.0 16.2 108 669-779 28-139 (148)
161 3sz7_A HSC70 cochaperone (SGT) 98.6 4.1E-07 1.4E-11 83.8 13.5 111 667-779 9-119 (164)
162 3gw4_A Uncharacterized protein 98.6 7.1E-07 2.4E-11 85.4 15.2 157 610-767 3-176 (203)
163 2dba_A Smooth muscle cell asso 98.6 1.2E-06 4E-11 78.8 15.8 112 702-816 26-141 (148)
164 2hr2_A Hypothetical protein; a 98.6 1.3E-06 4.4E-11 77.5 15.3 101 709-810 16-144 (159)
165 2c2l_A CHIP, carboxy terminus 98.6 1.7E-07 5.9E-12 95.0 11.2 196 563-767 3-199 (281)
166 3rkv_A Putative peptidylprolyl 98.6 5E-07 1.7E-11 82.9 13.0 72 735-809 60-131 (162)
167 2xev_A YBGF; tetratricopeptide 98.6 1.3E-06 4.4E-11 76.4 14.9 98 709-809 7-110 (129)
168 2fbn_A 70 kDa peptidylprolyl i 98.6 1.6E-07 5.5E-12 89.7 9.3 142 677-822 12-170 (198)
169 1p5q_A FKBP52, FK506-binding p 98.5 1.2E-06 4.2E-11 91.3 16.4 150 614-766 128-293 (336)
170 3q49_B STIP1 homology and U bo 98.5 1.2E-06 4.1E-11 77.6 14.0 104 666-770 6-109 (137)
171 4gcn_A Protein STI-1; structur 98.5 1.4E-06 4.8E-11 76.0 13.9 105 670-777 9-120 (127)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 8.3E-07 2.9E-11 96.9 14.5 97 704-801 317-414 (457)
173 1zu2_A Mitochondrial import re 98.5 3.1E-07 1.1E-11 81.3 8.3 104 715-821 13-137 (158)
174 3k9i_A BH0479 protein; putativ 98.5 2.3E-07 7.9E-12 79.8 7.2 84 717-801 3-89 (117)
175 2kck_A TPR repeat; tetratricop 98.5 1.1E-06 3.7E-11 74.4 10.9 98 705-802 7-106 (112)
176 3rkv_A Putative peptidylprolyl 98.5 1.1E-06 3.8E-11 80.6 11.8 115 670-785 12-144 (162)
177 1hxi_A PEX5, peroxisome target 98.4 1.4E-06 4.6E-11 75.3 11.4 99 671-770 19-117 (121)
178 1dce_A Protein (RAB geranylger 98.4 5.6E-06 1.9E-10 92.3 19.4 174 614-791 44-244 (567)
179 2kck_A TPR repeat; tetratricop 98.4 1.6E-06 5.6E-11 73.3 11.7 104 667-771 4-110 (112)
180 1elr_A TPR2A-domain of HOP; HO 98.4 1.5E-06 5.3E-11 75.9 11.8 113 669-784 4-123 (131)
181 1dce_A Protein (RAB geranylger 98.4 5.1E-06 1.7E-10 92.6 18.7 170 648-822 43-240 (567)
182 3k9i_A BH0479 protein; putativ 98.4 4.7E-07 1.6E-11 77.8 7.7 94 681-775 2-97 (117)
183 2xev_A YBGF; tetratricopeptide 98.4 7.4E-06 2.5E-10 71.4 15.6 106 673-779 6-116 (129)
184 1ihg_A Cyclophilin 40; ppiase 98.4 2.3E-06 8E-11 90.1 14.4 90 704-794 273-362 (370)
185 3ro3_A PINS homolog, G-protein 98.4 1.4E-06 4.7E-11 79.6 11.2 132 670-801 10-157 (164)
186 1wao_1 Serine/threonine protei 98.4 7.4E-07 2.5E-11 97.7 10.7 122 674-797 11-134 (477)
187 4b4t_Q 26S proteasome regulato 98.4 7.2E-06 2.5E-10 89.1 18.3 194 608-801 13-244 (434)
188 2hr2_A Hypothetical protein; a 98.4 2.1E-06 7.3E-11 76.1 10.9 101 670-770 12-134 (159)
189 2if4_A ATFKBP42; FKBP-like, al 98.3 6.6E-07 2.2E-11 93.3 8.3 149 634-802 179-328 (338)
190 2kat_A Uncharacterized protein 98.3 5.7E-06 1.9E-10 70.6 11.5 100 722-822 3-103 (115)
191 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 8.4E-06 2.9E-10 88.9 15.2 113 707-822 271-399 (457)
192 1ihg_A Cyclophilin 40; ppiase 98.3 8.8E-06 3E-10 85.7 14.8 131 670-822 224-355 (370)
193 1wao_1 Serine/threonine protei 98.3 4E-06 1.4E-10 91.8 12.6 117 644-762 16-134 (477)
194 4b4t_Q 26S proteasome regulato 98.3 3.9E-05 1.3E-09 83.2 20.4 24 536-559 11-34 (434)
195 2l6j_A TPR repeat-containing p 98.2 1.1E-06 3.9E-11 74.3 5.8 95 703-798 3-103 (111)
196 3ma5_A Tetratricopeptide repea 98.2 8E-06 2.7E-10 67.5 9.4 87 734-821 3-90 (100)
197 1na3_A Designed protein CTPR2; 98.2 2.4E-05 8.2E-10 63.0 12.0 80 706-786 11-90 (91)
198 3ro3_A PINS homolog, G-protein 98.1 1.2E-05 4E-10 73.2 11.0 132 636-767 11-158 (164)
199 3n71_A Histone lysine methyltr 98.1 1.5E-05 5E-10 86.6 13.1 104 231-349 353-463 (490)
200 3n71_A Histone lysine methyltr 98.1 2.7E-05 9.1E-10 84.6 15.0 123 679-802 319-464 (490)
201 1klx_A Cysteine rich protein B 98.1 7.9E-05 2.7E-09 65.7 14.6 111 683-803 9-127 (138)
202 2if4_A ATFKBP42; FKBP-like, al 98.0 9.5E-06 3.3E-10 84.5 9.2 152 599-770 179-331 (338)
203 1na3_A Designed protein CTPR2; 98.0 4.5E-05 1.5E-09 61.4 11.3 83 737-822 8-91 (91)
204 1zu2_A Mitochondrial import re 98.0 1.7E-05 5.8E-10 70.2 8.4 89 681-770 14-123 (158)
205 2kat_A Uncharacterized protein 98.0 3.2E-05 1.1E-09 65.8 9.8 95 687-782 3-98 (115)
206 2l6j_A TPR repeat-containing p 97.9 5.2E-05 1.8E-09 63.7 10.6 83 737-822 3-92 (111)
207 1klx_A Cysteine rich protein B 97.9 0.00048 1.6E-08 60.6 15.8 111 648-768 9-127 (138)
208 3ma5_A Tetratricopeptide repea 97.8 9.6E-05 3.3E-09 60.9 9.0 84 702-785 5-89 (100)
209 2kc7_A BFR218_protein; tetratr 97.7 9.9E-05 3.4E-09 60.6 7.6 82 710-800 6-88 (99)
210 3bee_A Putative YFRE protein; 97.6 0.00042 1.5E-08 55.7 10.2 68 734-802 2-72 (93)
211 3ly7_A Transcriptional activat 97.5 0.00087 3E-08 68.2 13.6 87 732-822 271-357 (372)
212 3qww_A SET and MYND domain-con 97.5 0.00039 1.3E-08 74.1 11.4 83 718-801 312-410 (433)
213 3qwp_A SET and MYND domain-con 97.5 0.0013 4.5E-08 70.2 15.6 88 713-801 296-399 (429)
214 1pc2_A Mitochondria fission pr 97.5 0.00054 1.9E-08 59.8 10.0 93 720-814 14-110 (152)
215 3qww_A SET and MYND domain-con 97.4 0.00047 1.6E-08 73.5 9.4 85 172-256 312-409 (433)
216 3bee_A Putative YFRE protein; 97.2 0.0018 6.2E-08 51.9 9.1 70 701-770 3-75 (93)
217 2kc7_A BFR218_protein; tetratr 97.1 0.0037 1.3E-07 50.8 10.4 63 743-808 5-68 (99)
218 3qwp_A SET and MYND domain-con 97.1 0.0014 4.8E-08 70.0 9.6 88 169-256 298-398 (429)
219 3ly7_A Transcriptional activat 97.0 0.0057 2E-07 62.2 12.5 74 701-777 274-347 (372)
220 3u64_A Protein TP_0956; tetrat 97.0 0.0038 1.3E-07 60.7 10.6 90 720-809 179-278 (301)
221 3lvg_A Clathrin heavy chain 1; 96.8 5.7E-05 1.9E-09 77.8 -3.6 257 137-447 59-325 (624)
222 2v5f_A Prolyl 4-hydroxylase su 96.8 0.015 5.2E-07 47.7 11.8 62 709-770 10-78 (104)
223 2v5f_A Prolyl 4-hydroxylase su 96.7 0.012 4.1E-07 48.4 10.6 72 737-810 4-81 (104)
224 4ady_A RPN2, 26S proteasome re 96.6 1.5 5.1E-05 50.5 40.1 171 645-822 501-675 (963)
225 1nzn_A CGI-135 protein, fissio 96.6 0.01 3.5E-07 49.7 9.1 98 715-814 12-113 (126)
226 1pc2_A Mitochondria fission pr 96.6 0.016 5.4E-07 50.5 10.7 85 685-770 14-103 (152)
227 4ady_A RPN2, 26S proteasome re 96.5 1.9 6.3E-05 49.7 40.8 26 394-419 233-258 (963)
228 3mkq_A Coatomer beta'-subunit; 96.1 0.27 9.4E-06 57.6 21.4 98 540-661 610-708 (814)
229 3lvg_A Clathrin heavy chain 1; 95.8 0.0005 1.7E-08 71.0 -3.3 214 321-554 54-287 (624)
230 3u64_A Protein TP_0956; tetrat 95.8 0.05 1.7E-06 52.9 10.4 110 173-290 178-295 (301)
231 3mkq_A Coatomer beta'-subunit; 95.7 0.19 6.3E-06 59.1 17.3 102 325-453 633-734 (814)
232 1wy6_A Hypothetical protein ST 95.1 1.2 4.2E-05 37.2 15.3 140 610-770 18-157 (172)
233 3mkq_B Coatomer subunit alpha; 94.9 0.85 2.9E-05 40.8 14.7 101 643-763 14-114 (177)
234 3mkq_B Coatomer subunit alpha; 94.9 0.85 2.9E-05 40.8 14.7 128 273-452 14-141 (177)
235 4h7y_A Dual specificity protei 94.9 0.26 9E-06 42.2 10.7 64 716-780 72-135 (161)
236 1nzn_A CGI-135 protein, fissio 94.5 0.36 1.2E-05 40.3 10.6 90 683-774 15-109 (126)
237 4gns_B Protein CSD3, chitin bi 94.3 0.17 6E-06 57.0 10.9 54 745-799 344-397 (754)
238 3o48_A Mitochondria fission 1 94.3 0.38 1.3E-05 40.4 10.1 80 733-814 35-117 (134)
239 4h7y_A Dual specificity protei 94.1 0.52 1.8E-05 40.4 10.7 61 475-535 74-134 (161)
240 1y8m_A FIS1; mitochondria, unk 94.0 1 3.5E-05 38.3 12.4 78 735-814 36-116 (144)
241 4b4t_P 26S proteasome regulato 93.3 5.4 0.00019 42.3 20.0 151 672-822 140-307 (445)
242 1wy6_A Hypothetical protein ST 93.1 3.4 0.00012 34.6 16.4 138 240-386 18-155 (172)
243 2ff4_A Probable regulatory pro 92.9 0.61 2.1E-05 48.7 11.7 74 742-816 175-253 (388)
244 3ffl_A Anaphase-promoting comp 92.3 0.64 2.2E-05 40.8 8.9 29 772-800 121-149 (167)
245 2ff4_A Probable regulatory pro 90.9 1.4 4.7E-05 46.1 11.5 77 707-783 174-255 (388)
246 4b4t_P 26S proteasome regulato 90.0 22 0.00074 37.6 21.4 96 706-801 139-246 (445)
247 4gns_B Protein CSD3, chitin bi 88.8 5.5 0.00019 45.0 14.7 49 715-763 348-396 (754)
248 4fhn_B Nucleoporin NUP120; pro 88.2 13 0.00043 45.1 18.7 184 639-844 817-1008(1139)
249 2wpv_A GET4, UPF0363 protein Y 86.6 26 0.00091 34.6 18.9 27 493-519 132-158 (312)
250 3o48_A Mitochondria fission 1 86.5 8 0.00027 32.4 10.7 70 701-770 37-110 (134)
251 1qsa_A Protein (soluble lytic 85.9 46 0.0016 36.7 35.6 136 332-477 17-152 (618)
252 3txn_A 26S proteasome regulato 85.6 35 0.0012 35.1 21.3 58 674-731 104-166 (394)
253 3ffl_A Anaphase-promoting comp 85.5 4.4 0.00015 35.6 9.0 129 640-782 26-164 (167)
254 3lpz_A GET4 (YOR164C homolog); 84.0 36 0.0012 33.9 21.4 82 526-626 133-214 (336)
255 1zbp_A Hypothetical protein VP 83.8 6.6 0.00023 37.6 10.2 53 644-697 7-59 (273)
256 1zbp_A Hypothetical protein VP 82.8 3.7 0.00013 39.3 8.0 113 678-801 6-128 (273)
257 4b4t_R RPN7, 26S proteasome re 82.4 12 0.0004 39.5 12.9 61 671-731 133-195 (429)
258 4fhn_B Nucleoporin NUP120; pro 81.9 30 0.001 41.9 17.7 51 570-625 818-868 (1139)
259 2p58_C Putative type III secre 80.1 13 0.00044 29.1 8.5 78 173-259 22-99 (116)
260 3txn_A 26S proteasome regulato 80.0 58 0.002 33.5 21.2 220 569-803 104-344 (394)
261 1y8m_A FIS1; mitochondria, unk 78.6 30 0.001 29.4 13.1 69 702-770 37-109 (144)
262 2uwj_G Type III export protein 78.4 12 0.00043 29.2 7.9 78 173-259 21-98 (115)
263 1v54_E Cytochrome C oxidase po 77.1 9.1 0.00031 30.1 7.0 44 690-733 31-74 (109)
264 4b4t_R RPN7, 26S proteasome re 74.6 18 0.00062 38.0 11.4 98 636-733 133-237 (429)
265 3esl_A Checkpoint serine/threo 73.7 43 0.0015 30.4 11.7 59 751-809 92-151 (202)
266 1v54_E Cytochrome C oxidase po 73.6 22 0.00076 28.0 8.3 50 442-491 26-75 (109)
267 2p58_C Putative type III secre 72.2 31 0.0011 27.0 8.8 78 579-664 22-99 (116)
268 3esl_A Checkpoint serine/threo 70.8 27 0.00092 31.7 9.7 55 717-771 92-148 (202)
269 4a1g_A Mitotic checkpoint seri 70.5 23 0.00079 30.6 8.9 55 211-265 82-137 (152)
270 2qx5_A Nucleoporin NIC96; mRNA 70.5 61 0.0021 35.9 14.5 43 196-240 155-197 (661)
271 3lpz_A GET4 (YOR164C homolog); 69.8 92 0.0032 31.0 23.6 81 701-801 133-215 (336)
272 2uwj_G Type III export protein 68.5 30 0.001 27.1 7.9 78 579-664 21-98 (115)
273 2wpv_A GET4, UPF0363 protein Y 68.5 95 0.0033 30.6 21.8 167 266-488 35-215 (312)
274 1qsa_A Protein (soluble lytic 66.3 1.6E+02 0.0055 32.4 36.0 387 368-796 18-436 (618)
275 2y69_E Cytochrome C oxidase su 64.7 43 0.0015 28.0 8.7 45 690-734 74-118 (152)
276 2wvi_A Mitotic checkpoint seri 63.2 77 0.0026 27.7 10.9 59 755-813 77-136 (164)
277 2y69_E Cytochrome C oxidase su 61.0 48 0.0016 27.8 8.3 47 445-491 72-118 (152)
278 4a1g_A Mitotic checkpoint seri 60.8 48 0.0016 28.6 8.9 51 757-807 84-135 (152)
279 2wvi_A Mitotic checkpoint seri 60.6 28 0.00097 30.5 7.6 54 212-265 78-132 (164)
280 4aez_C MAD3, mitotic spindle c 56.4 45 0.0015 30.9 8.5 54 211-264 131-185 (223)
281 3ltm_A Alpha-REP4; protein eng 50.5 1.4E+02 0.0049 26.9 18.3 77 736-820 124-200 (211)
282 4aez_C MAD3, mitotic spindle c 47.5 81 0.0028 29.2 8.7 54 755-808 131-185 (223)
283 2qx5_A Nucleoporin NIC96; mRNA 46.4 3.4E+02 0.012 30.0 18.9 81 534-625 299-382 (661)
284 1ya0_A SMG-7 transcript varian 45.9 1.1E+02 0.0038 32.5 11.0 79 706-785 154-232 (497)
285 2r9g_A AAA ATPase, central reg 40.8 1.9E+02 0.0066 26.1 9.7 55 612-667 27-86 (204)
286 2nsz_A Programmed cell death p 39.2 1.7E+02 0.0057 24.3 9.0 65 266-353 9-75 (129)
287 1ya0_A SMG-7 transcript varian 39.2 1.4E+02 0.0047 31.9 10.3 80 671-751 154-233 (497)
288 1wdy_A 2-5A-dependent ribonucl 36.1 91 0.0031 29.8 8.1 18 200-217 8-25 (285)
289 2ion_A PDCD4, programmed cell 34.5 1.3E+02 0.0045 25.9 7.7 65 266-353 11-77 (152)
290 4b4t_S RPN3, 26S proteasome re 34.2 2.8E+02 0.0094 29.6 11.4 69 669-737 231-303 (523)
291 3eiq_C Programmed cell death p 33.7 3.8E+02 0.013 26.9 12.9 26 196-221 56-81 (358)
292 3bge_A Predicted ATPase; struc 33.2 1.9E+02 0.0066 26.0 8.4 37 612-648 20-56 (201)
293 4gq2_M Nucleoporin NUP120; bet 33.1 3.6E+02 0.012 31.6 13.6 49 774-822 898-950 (950)
294 3ctd_A Putative ATPase, AAA fa 32.3 2.4E+02 0.0082 25.7 9.0 55 612-666 48-107 (213)
295 3ltm_A Alpha-REP4; protein eng 30.3 3E+02 0.01 24.6 17.0 163 668-845 32-198 (211)
296 2d2s_A Exocyst complex compone 28.6 2.4E+02 0.0082 26.4 9.0 89 327-418 24-118 (235)
297 1bpo_A Protein (clathrin); cla 27.8 5.4E+02 0.019 26.8 12.1 119 163-287 334-452 (494)
298 2r9g_A AAA ATPase, central reg 26.4 3.6E+02 0.012 24.3 10.1 53 577-630 27-84 (204)
299 3pvs_A Replication-associated 26.2 5.7E+02 0.02 26.6 13.7 21 648-668 269-289 (447)
300 2ijq_A Hypothetical protein; s 25.3 2.1E+02 0.007 24.9 7.2 55 747-801 41-103 (161)
301 1k1a_A B-cell lymphoma 3-encod 24.8 3.7E+02 0.012 24.5 10.1 28 328-355 13-40 (241)
302 3ph0_C ASCG; type III secretio 24.2 1.1E+02 0.0037 21.0 3.9 40 173-214 21-60 (61)
303 2ion_A PDCD4, programmed cell 23.2 3.2E+02 0.011 23.4 8.1 24 708-731 13-36 (152)
304 2xig_A Ferric uptake regulatio 22.8 3.1E+02 0.011 23.3 8.1 45 743-787 31-75 (150)
305 1oai_A Nuclear RNA export fact 22.6 1.9E+02 0.0065 20.1 5.2 24 171-194 33-56 (59)
306 4gq2_M Nucleoporin NUP120; bet 22.6 6.9E+02 0.024 29.1 13.5 131 640-787 816-950 (950)
307 2d2s_A Exocyst complex compone 22.5 4.7E+02 0.016 24.4 9.7 22 640-661 24-45 (235)
308 3bge_A Predicted ATPase; struc 21.8 4.3E+02 0.015 23.8 8.6 21 542-562 20-40 (201)
309 2nsz_A Programmed cell death p 21.7 3.4E+02 0.012 22.4 9.5 22 709-730 12-33 (129)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-40 Score=383.65 Aligned_cols=521 Identities=10% Similarity=-0.005 Sum_probs=317.6
Q ss_pred HhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHH
Q 003020 169 KEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEA 248 (856)
Q Consensus 169 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 248 (856)
...|....+...|+.+. .+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|
T Consensus 64 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS-----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccCccCCCCCccccch-----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHH
Confidence 34455555555555332 35678889999999999999999999988885 456778888888899999999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhcc----CCcCCCCcCHhHH
Q 003020 249 VCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVEN----GSHVNGSLSSYTY 324 (856)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 324 (856)
+.+|+++... +++..+++.++.+|.+.|++++|..+|++..... ...... ......+.+..+|
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 203 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR-----------KDEKNANKLLMQDGGIKLEASMC 203 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------------CCCSSCCHHHHHH
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc-----------ccccccccccccccccchhHHHH
Confidence 9999887654 5677888888888888999999888887432100 000000 0000112234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 003020 325 NTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKN 404 (856)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 404 (856)
+.++.+|.+.|++++|++.|++|.+.+.. +...+..+...+...+..+.+.
T Consensus 204 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~---------------------------- 254 (597)
T 2xpi_A 204 YLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDL---------------------------- 254 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHH----------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHH----------------------------
Confidence 55555555555555555555555443211 2223333333222221111100
Q ss_pred CChHHHHHH-HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHH
Q 003020 405 DKISMASRY-FWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLW 483 (856)
Q Consensus 405 g~~~~A~~~-~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 483 (856)
+..+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..++..++.+|.+.|++++|..+
T Consensus 255 -----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (597)
T 2xpi_A 255 -----VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAI 327 (597)
T ss_dssp -----HHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 0000 222222222233334444455555555555555555555443 24555555555555555555555555
Q ss_pred HHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 003020 484 FRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPD 563 (856)
Q Consensus 484 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 563 (856)
|+++...+|.+..++..++..+.+.|++++|..+|+.+....+.+..+|+.++..|.+.|++++|.++|+++.
T Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------- 400 (597)
T 2xpi_A 328 TTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS------- 400 (597)
T ss_dssp HHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------
T ss_pred HHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-------
Confidence 5555444444444444444444444444444444444443334444444444444444444444444444443
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003020 564 KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINA 643 (856)
Q Consensus 564 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 643 (856)
+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+
T Consensus 401 ----------------------------~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 401 ----------------------------TMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp ----------------------------HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred ----------------------------HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 322 2345567777777777777888888887777654 3467778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHc
Q 003020 644 FADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL----EASPD--VYTSNCMIDLYSER 717 (856)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~ 717 (856)
|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 888888888888888887654 557788888888888888888888888887764 55676 67888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 718 SMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYA 784 (856)
Q Consensus 718 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 784 (856)
|++++|.+.++++.+..|.++.+|..++.+|...|++++|.+.++++++..|. ++..+..++.+|.
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRALE 595 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888877 7788888777664
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-39 Score=375.98 Aligned_cols=491 Identities=10% Similarity=-0.008 Sum_probs=324.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCC
Q 003020 164 RSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGG 243 (856)
Q Consensus 164 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 243 (856)
....+...|++++|+.+|+.+... .|+..++..++.+|.+.|++++|+.+|+++.. ..++..+++.++.+|.+.|
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHh
Confidence 344567789999999999999864 46778999999999999999999999999865 3568999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCC-----hhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCC
Q 003020 244 LKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGE-----FQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGS 318 (856)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (856)
++++|+.+|+++... +.. ...+.+.++ ...+...+... ......++...++..++.+...+ +
T Consensus 165 ~~~~A~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~-p 231 (597)
T 2xpi_A 165 DWQGALNLLGETNPF----RKD-----EKNANKLLMQDGGIKLEASMCYLRG---QVYTNLSNFDRAKECYKEALMVD-A 231 (597)
T ss_dssp CHHHHHHHHCSSCTT----C---------------CCCSSCCHHHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred hHHHHHHHHhccCCc----ccc-----ccccccccccccccchhHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 999999999963221 110 111111121 12222222211 11222345667777777665543 2
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003020 319 LSSYTYNTLIDTYGKAGQLKEASE--T-FAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYN 395 (856)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~--~-~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 395 (856)
.+...+..++..+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 309 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLL 309 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHH
Confidence 345666666665544433322221 1 445544444444556666677777777778888887777654 56777777
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcC
Q 003020 396 ILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAG 475 (856)
Q Consensus 396 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 475 (856)
.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.++.+.|++++|.++++++.+.. +.+..++..++.+|.+.
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~- 386 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCV- 386 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHh-
Confidence 777777777777777777777776542 356677777777777777777777777766432 22444555555555554
Q ss_pred ChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003020 476 MLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSM 555 (856)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 555 (856)
|++++|.+.|+++.+..+.+..+|+.++.+|.+.|++++|+++|+++
T Consensus 387 ---------------------------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 387 ---------------------------------NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp ---------------------------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ---------------------------------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555545666778888888888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003020 556 TSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVV 635 (856)
Q Consensus 556 ~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 635 (856)
.+.+ | .+..++..++.+|.+.|++++|.++|+++.+.. +.+..
T Consensus 434 ~~~~--~----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 476 (597)
T 2xpi_A 434 ARLF--Q----------------------------------GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPL 476 (597)
T ss_dssp HHTT--T----------------------------------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred HHhC--c----------------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 7652 1 234445555566666666666666666666543 23566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESA----GLPPN--AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNC 709 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 709 (856)
+|+.++..|.+.|++++|..+|+++.+. +..|+ ..+|..++.+|.+.|++++|++.|+++.+.+ +.+..+|..
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 555 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 6666666666667777777666666553 44555 6677777777777777777777777777644 246677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
++.+|...|++++|.+.++++.+..|.++.++..+..+|
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 777777778888888888777777777777777776655
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=1.8e-28 Score=265.80 Aligned_cols=184 Identities=14% Similarity=0.125 Sum_probs=93.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 600 IPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLY 679 (856)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 679 (856)
..+..+...+...|++++|+..|+++++.. +.+..++..++.++...|++++|...|+++.+.+ |.+..+|..++.++
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 334444444455555555555555554432 1234455555555555555555555555555442 33344555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
.+.|++++|++.|+++.+.. +.+..++..++..+...|++++|.+.++++.+..|.+..++..++.++.+.|++++|++
T Consensus 282 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555555432 13344455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003020 760 IAKQMRESGLISDLLSYNNVLGLYAVDG 787 (856)
Q Consensus 760 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g 787 (856)
.++++++..|. ++..|..++.++...|
T Consensus 361 ~~~~a~~~~p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 361 HYKEAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhCCC-CHHHHHhHHHHHHHcc
Confidence 55555555444 4455555555544443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=1.5e-28 Score=266.51 Aligned_cols=381 Identities=15% Similarity=0.127 Sum_probs=312.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHH
Q 003020 433 LYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVL 512 (856)
Q Consensus 433 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 512 (856)
...+.+.|++++|++.+.++.+..+ .+...+..+...+...|++++|...++......|.+..+|..++..+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 3445556666666666666655422 234455556666666677777777777776667777777777777777777777
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 003020 513 EAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQE 592 (856)
Q Consensus 513 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 592 (856)
+|+..|+++....|.+..+|..++.++...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77777777777777777888888888888888888888888887753 22455667777888888888888888888887
Q ss_pred cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003020 593 AGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIY 672 (856)
Q Consensus 593 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 672 (856)
.. +.+..+|..+...+...|++++|...|+++++.+ +.+...|..+...+...|++++|...|++..... |.+..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 64 3457789999999999999999999999999875 3467899999999999999999999999998864 5578899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 003020 673 NSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG 752 (856)
Q Consensus 673 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 752 (856)
..++.++...|++++|++.|+++.+... .+...|..++.++.+.|++++|.+.++++.+..|.+..++..++.++...|
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Confidence 9999999999999999999999998542 356789999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcC
Q 003020 753 RFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDD-FTFKSLGAVLMKCG 822 (856)
Q Consensus 753 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~G 822 (856)
++++|++.++++++..|. +..++..++.+|.+.|++++|+..|+++++ +.|+. ..|..+...+...|
T Consensus 320 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 999999999999998876 889999999999999999999999999998 46764 45778877776654
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.4e-25 Score=249.00 Aligned_cols=454 Identities=11% Similarity=0.026 Sum_probs=286.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003020 321 SYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFL 400 (856)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 400 (856)
+..|......+.+.|++++|+..|+++++.+ |+..+|..+..++...|++++|...++++.+.+ |.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4677888899999999999999999999865 789999999999999999999999999999875 6677899999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHH
Q 003020 401 HAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKS 480 (856)
Q Consensus 401 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 480 (856)
+.+.|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+......-.............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998763 455555555555554444444444443333322222221111100000000000000
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc---cCCHHHHHHHHHHHHh
Q 003020 481 WLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGM---GRNYDKACNLFDSMTS 557 (856)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 557 (856)
..+...+.. +...... . .-..+.+...+......+.. .|++++|+..|+++.+
T Consensus 162 ~~~~~~~~~---------------~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 162 TSMASFFGI---------------FKPELTF----A-----NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp HHHHHHHTT---------------SCCCCCC----S-----SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh---------------cCHHHHH----H-----HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 000000000 0000000 0 00002224444444444443 6666666666666665
Q ss_pred -----CCC--------CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 558 -----HGA--------VPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKD 624 (856)
Q Consensus 558 -----~~~--------~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (856)
... +.+..++..+...+...|++++|...++++.+.... ..++..+...+...|++++|...+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 211 112345666666677777777777777776665432 66667777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003020 625 MIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDV 704 (856)
Q Consensus 625 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 704 (856)
+.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..++..+...|++++|+..|+.+.+... .+.
T Consensus 296 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 372 (514)
T 2gw1_A 296 ALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAP 372 (514)
T ss_dssp HHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCS
T ss_pred HhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCH
Confidence 77653 3355667777777777777777777777777654 44556777777777777777777777777766432 234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANE------FTYAMMLIMYKR---NGRFEEATRIAKQMRESGLISDLLS 775 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~ 775 (856)
..+..++..+...|++++|...++++.+..|.+. .++..++.++.. .|++++|++.++++++..|. ++.+
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~ 451 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQA 451 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHH
Confidence 5666777777777777777777777766554443 367777777777 77777777777777777665 6677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 776 YNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFT 810 (856)
Q Consensus 776 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 810 (856)
+..++.+|...|++++|...|+++++. .|+...
T Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~ 484 (514)
T 2gw1_A 452 KIGLAQMKLQQEDIDEAITLFEESADL--ARTMEE 484 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHH
Confidence 777777777777777777777777773 555544
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-24 Score=244.65 Aligned_cols=426 Identities=11% Similarity=-0.003 Sum_probs=295.4
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 003020 356 TVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYA 435 (856)
Q Consensus 356 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 435 (856)
...+......+.+.|++++|...|+++.+.+ |+..+|..+..++.+.|++++|+..|+++.+.+ +.+..+|..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3455666666777777777777777777653 566777777777777777777777777776654 2345666777777
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHH
Q 003020 436 YSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAE 515 (856)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 515 (856)
+...|++++|+..|+++.+.+. ++......++..+........+...+..+. .+.
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------~~~ 137 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDID------------------------TAT 137 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHH
Confidence 7777777777777777766543 233333333322222211111111111110 000
Q ss_pred HHHHHHhcCCCCcHHHH--HHHHHHHHccCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHc---CCChHHHH
Q 003020 516 RAFICCQEGKKLTVLVF--NVMVKAYGMGRNYDKACNLFDSMTSH------GAVPDKCSYNSLIQILAG---ADLPHMAK 584 (856)
Q Consensus 516 ~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~ll~~~~~---~~~~~~A~ 584 (856)
.. ++..... ...............+...+...... ..+.+...+......+.. .|++++|.
T Consensus 138 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 209 (514)
T 2gw1_A 138 AT--------PTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKAD 209 (514)
T ss_dssp ---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred Hh--------hhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 00 0000000 00000000001111111111110000 001224555555555555 89999999
Q ss_pred HHHHHHHH-----cCC--------CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003020 585 RYLRKMQE-----AGL--------VSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVK 651 (856)
Q Consensus 585 ~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 651 (856)
..++++.+ ... +.+..++..+...+...|++++|...|+++.+..+ +...+..+...+...|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDST 287 (514)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCT
T ss_pred HHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHH
Confidence 99999988 311 22355788899999999999999999999998753 3889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 652 QAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMK 731 (856)
Q Consensus 652 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 731 (856)
+|...++++.+.. +.+..++..++..+...|++++|+..|+++.+... .+...+..++..+...|++++|...++++.
T Consensus 288 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 288 EYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp TGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998874 56778999999999999999999999999998543 356678889999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcC
Q 003020 732 KKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISD-----LLSYNNVLGLYAV---DGRFKDVIGTFKDMVNAA 803 (856)
Q Consensus 732 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g 803 (856)
+..|.++.++..++.++...|++++|++.++++++..+... ..+|..++.+|.. .|++++|+..++++++..
T Consensus 366 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 366 RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 99899999999999999999999999999999998866521 3489999999999 999999999999999852
Q ss_pred CCCCHHHHHHHHHHHHHcC
Q 003020 804 IQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 804 ~~p~~~~~~~l~~~~~~~G 822 (856)
..+...+..+..++.+.|
T Consensus 446 -~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 446 -PRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp -TTCHHHHHHHHHHHHHTT
T ss_pred -cccHHHHHHHHHHHHHhc
Confidence 334567899999999999
No 7
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=4.5e-26 Score=250.47 Aligned_cols=187 Identities=13% Similarity=0.134 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCC---------HHHHHHHHHHHHhCCCCccHH
Q 003020 195 IHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGL---------KEEAVCWLERMNEGGMEPDEV 265 (856)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~ 265 (856)
..++.+|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.+. .++|.++|++|.+.|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~- 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE- 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH-
Confidence 34556666666666666666666666666666666666666666655443 34455555555555555554
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003020 266 TMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFA 345 (856)
Q Consensus 266 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (856)
.+||+||.+|++.|++++|.++|+
T Consensus 106 --------------------------------------------------------~tyn~lI~~~~~~g~~~~A~~l~~ 129 (501)
T 4g26_A 106 --------------------------------------------------------ATFTNGARLAVAKDDPEMAFDMVK 129 (501)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --------------------------------------------------------HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555555555555555555555555
Q ss_pred HHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 003020 346 QMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPD 425 (856)
Q Consensus 346 ~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 425 (856)
+|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+
T Consensus 130 ~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 130 QMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred HHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhHHHHHHHHHh
Q 003020 426 IVSYRTLLYAYSI 438 (856)
Q Consensus 426 ~~~~~~ll~~~~~ 438 (856)
..||+.++..|..
T Consensus 210 ~~T~~~l~~~F~s 222 (501)
T 4g26_A 210 KSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc
Confidence 5555555555543
No 8
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=9e-26 Score=248.09 Aligned_cols=189 Identities=16% Similarity=0.204 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---------hHHHHHHHHHHHHcCCCCCh
Q 003020 529 VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADL---------PHMAKRYLRKMQEAGLVSDC 599 (856)
Q Consensus 529 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~ 599 (856)
...++.+|++|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. .+.|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 457889999999999999999999999999999999999999999987664 68899999999999999999
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 600 IPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLY 679 (856)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 679 (856)
.+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++|+.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSER 717 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 717 (856)
++.|++++|.++|++|.+.+..|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988753
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=3e-23 Score=235.43 Aligned_cols=435 Identities=11% Similarity=0.043 Sum_probs=283.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 320 SSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIF 399 (856)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 399 (856)
....|..+...+.+.|++++|+..|+++++..+ .+..++..+..++...|++++|...++++.+.+ |.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 356788899999999999999999999998753 377899999999999999999999999999876 667889999999
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCC------CCCCHhhHHHHHHHHHH
Q 003020 400 LHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGG------LEIDEYTQSALTRMYIE 473 (856)
Q Consensus 400 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~ 473 (856)
++...|++++|+..|+.+ .. .|+. ....+..+...+...+|...+++++... ..|+. ..+..+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence 999999999999999633 22 2332 2223445666677788999999987642 22333 23344555
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhh--------cCCHHHHHHHHHHHhcCCCCcHH-------HHHHHHHH
Q 003020 474 AGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGE--------RGHVLEAERAFICCQEGKKLTVL-------VFNVMVKA 538 (856)
Q Consensus 474 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~-------~~~~li~~ 538 (856)
..+.+.+...+.+.....+........+...+.. .|++++|...|+.+.+..|.+.. ++..+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHH
Confidence 5665555444433322222222222333322222 24677777777777776666543 35555566
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 003020 539 YGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMA 618 (856)
Q Consensus 539 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 618 (856)
+...|++++|+..|+++.+. .|+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 66777777777777777764 3446666667777777777777777777776654 33556677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003020 619 EEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL 698 (856)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 698 (856)
...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|+..|+++.+.
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 77777776654 2245566667777777777777777777776653 445566667777777777777777777766552
Q ss_pred CCC-----CCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003020 699 EAS-----PDVYTSNCMIDLYSER----------SMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQ 763 (856)
Q Consensus 699 ~~~-----p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 763 (856)
... .....+..+..++... |++++|...++++.+..|.+..++..++.+|...|++++|++.+++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 110 1112233444555555 7777777777777766666777777777777777777777777777
Q ss_pred HHHcCCC
Q 003020 764 MRESGLI 770 (856)
Q Consensus 764 ~~~~~~~ 770 (856)
+++..|.
T Consensus 488 al~~~~~ 494 (537)
T 3fp2_A 488 SAILART 494 (537)
T ss_dssp HHHHC--
T ss_pred HHHhCCC
Confidence 7776655
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.5e-23 Score=228.26 Aligned_cols=362 Identities=12% Similarity=0.049 Sum_probs=255.1
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 003020 409 MASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFH 488 (856)
Q Consensus 409 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 488 (856)
.+...+.+..... +.+...+..++..+.+.|++++|+.+|+++++.. +.+..++..++.++...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444332 3455667777777777777777777777776542 2256666667777777777777777777776
Q ss_pred hcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 003020 489 LAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTV---LVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKC 565 (856)
Q Consensus 489 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 565 (856)
...|....++..++..|...|++++|...|+.+....+.+. ..+..++..+...
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------- 144 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ----------------------- 144 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------
Confidence 66666666666666666666666666666666666555555 5555554442111
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFA 645 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 645 (856)
.+..+...+...|++++|...++++.+.. +.+..++..++.+|.+.|++++|...|+++.+.. +.+..+|..++..|.
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 11223344666777777777777777653 3466777788888888888888888888887653 346778888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPPNAVIYNSL------------IKLYTKVGYLKEAQETYKLLRSLEASPD-----VYTSN 708 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~ 708 (856)
..|++++|+..|+++.... +.+...+..+ +..+.+.|++++|+..|+++.+.. |+ ...+.
T Consensus 223 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~ 299 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKE 299 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHH
Confidence 8888888888888887653 4455555444 888999999999999999998843 43 44788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH------
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGL------ 782 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~------ 782 (856)
.++.++.+.|++++|+..++++.+..|.+..+|..++.+|...|++++|+..++++++..|. ++..+..++.+
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhc
Confidence 88999999999999999999999888999999999999999999999999999999998887 88888888844
Q ss_pred ------HHhcC-----CHHHHHHHHHH-HHH
Q 003020 783 ------YAVDG-----RFKDVIGTFKD-MVN 801 (856)
Q Consensus 783 ------~~~~g-----~~~~A~~~~~~-~~~ 801 (856)
|...| +.+++.+.|++ .++
T Consensus 379 ~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~ 409 (450)
T 2y4t_A 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQ 409 (450)
T ss_dssp HHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH
T ss_pred ccchhHHHHhCCCccCCHHHHHHHHHHHHHH
Confidence 44445 56777888886 444
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=4.4e-23 Score=234.07 Aligned_cols=438 Identities=11% Similarity=0.031 Sum_probs=344.1
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 003020 356 TVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYA 435 (856)
Q Consensus 356 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 435 (856)
...+..+...+.+.|++++|...|+++.+.. |.+..++..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888889999999999999999999875 6688999999999999999999999999999875 3578899999999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc---hhhHHHHHHHhhcCCHH
Q 003020 436 YSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSS---EGYSANIDGYGERGHVL 512 (856)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 512 (856)
+...|++++|+..|+ .......+.. ..+..+...+...+|...++++....|... ......+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDFDG----ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999997 4433222222 223345555666788888888876543222 22234455566677777
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHcC
Q 003020 513 EAERAFICCQEGKKLTVLVFNVMVKAYGMG--------RNYDKACNLFDSMTSHGAVPD-------KCSYNSLIQILAGA 577 (856)
Q Consensus 513 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~-------~~~~~~ll~~~~~~ 577 (856)
.+...+.......+........+...+... |++++|+.+|+++.+.... + ..++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 776666555544444445556665555443 4889999999999876322 2 23567777888999
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003020 578 DLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYF 657 (856)
Q Consensus 578 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 657 (856)
|++++|...++++.+.. |+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999875 557889999999999999999999999999875 447889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 003020 658 DAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN 737 (856)
Q Consensus 658 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 737 (856)
+++.+.. +.+...+..++.++...|++++|+..|+++.+... .+...+..++.++...|++++|.+.++++.+..|.+
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 9998864 55678899999999999999999999999988542 456678889999999999999999999998765332
Q ss_pred ------HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 738 ------EFTYAMMLIMYKRN----------GRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 738 ------~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
...+..++.++... |++++|+..++++++..|. ++.++..++.+|...|++++|...|+++++
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 23355667888888 9999999999999999887 889999999999999999999999999999
Q ss_pred cCCCCCHH
Q 003020 802 AAIQPDDF 809 (856)
Q Consensus 802 ~g~~p~~~ 809 (856)
. .|+..
T Consensus 491 ~--~~~~~ 496 (537)
T 3fp2_A 491 L--ARTMD 496 (537)
T ss_dssp H--C--CH
T ss_pred h--CCCcH
Confidence 5 45433
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=9.8e-23 Score=225.52 Aligned_cols=390 Identities=11% Similarity=0.062 Sum_probs=287.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 373 AEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEM 452 (856)
Q Consensus 373 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 452 (856)
..+...+.+..... |.+...+..+...+.+.|++++|+.+|+++.+.. +.+..+|..++.++...|++++|+..|+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455555555443 5677899999999999999999999999999764 457889999999999999999999999999
Q ss_pred hcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc---hhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcH
Q 003020 453 DGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSS---EGYSANIDGYGERGHVLEAERAFICCQEGKKLTV 529 (856)
Q Consensus 453 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 529 (856)
++.++. +..++..++.+|...|++++|...|+++....|.+. ..+..++..+..
T Consensus 87 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------- 143 (450)
T 2y4t_A 87 IQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM---------------------- 143 (450)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----------------------
T ss_pred HhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------------------
Confidence 987533 678899999999999999999999999998888877 777777555321
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 003020 530 LVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSY 609 (856)
Q Consensus 530 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 609 (856)
..+..++..+...|++++|+..|+++.+.. +.+..++..++.++...|++++|...++++.+.. +.+..++..++.+|
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 123334455566677777777777776642 2356667777777777777777777777776653 34566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHH
Q 003020 610 MKLGQLEMAEEVYKDMIRFNVEPDVVVYGVL------------INAFADVGNVKQAQSYFDAMESAGLPPN----AVIYN 673 (856)
Q Consensus 610 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~ 673 (856)
...|++++|+..|+++.+.. +.+...+..+ +..+.+.|++++|..+|+++.+.. +.+ ...+.
T Consensus 222 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~ 299 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKE 299 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHH
Confidence 77888888888887777653 2244444444 788889999999999999998753 223 34788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH------
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM------ 747 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~------ 747 (856)
.++.++.+.|++++|+..++++.+.. +.+...|..++.+|...|++++|...++++.+..|.++.++..+..+
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 88899999999999999999988743 24678888999999999999999999999999889998888888844
Q ss_pred ------HHHcC-----CHHHHHHHHHH-HHHcCCC--CCH-------HHHHHHHHHHHhcCCHHHH
Q 003020 748 ------YKRNG-----RFEEATRIAKQ-MRESGLI--SDL-------LSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 748 ------~~~~g-----~~~~A~~~~~~-~~~~~~~--p~~-------~~~~~l~~~~~~~g~~~~A 792 (856)
|...| +.+++.+.|++ .++..|. |+. ..+..+..+|...|+.+.+
T Consensus 379 ~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred ccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 33344 56778888886 5665544 222 2566677777776665543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=1.9e-20 Score=199.91 Aligned_cols=326 Identities=12% Similarity=0.054 Sum_probs=205.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcc
Q 003020 463 TQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMG 542 (856)
Q Consensus 463 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 542 (856)
.+..++..+...|++++|...|+++....|.+..++..++..+...|++++|+..|+++....|.+..++..++.++...
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 44445555555555555555555555555555566666666666666666666666666665555666666666666667
Q ss_pred CCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 003020 543 RNYDKACNLFDSMTSHGAVP----DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMA 618 (856)
Q Consensus 543 g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 618 (856)
|++++|+..|+++.+. .| +...+..+..... ...+..+...+...|++++|
T Consensus 85 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp TCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHHH
Confidence 7777777777766654 23 1222222211100 01123344556666777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003020 619 EEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL 698 (856)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 698 (856)
...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...|+++.+.
T Consensus 140 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 140 ITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777766653 3355666666677777777777777777776653 456666777777777777777777777766663
Q ss_pred CCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHH
Q 003020 699 EASPDVYTSN------------CMIDLYSERSMVRQAEEIFEIMKKKGDANEF----TYAMMLIMYKRNGRFEEATRIAK 762 (856)
Q Consensus 699 ~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~ 762 (856)
.. .+...+. .++..+...|++++|...++++.+..|.++. .+..++.++...|++++|+..++
T Consensus 218 ~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 296 (359)
T 3ieg_A 218 DQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296 (359)
T ss_dssp CT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Cc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 32 1222221 2355677788888888888888777766653 34557778888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 003020 763 QMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDD-FTFKSLGAVLM 819 (856)
Q Consensus 763 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~ 819 (856)
++++..|. ++.+|..++.+|...|++++|...|+++++. .|+. ..+..+..+..
T Consensus 297 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 297 EVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 88887766 7778888888888888888888888888773 5553 33555554443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=5.5e-20 Score=196.35 Aligned_cols=286 Identities=13% Similarity=0.073 Sum_probs=211.8
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003020 496 EGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILA 575 (856)
Q Consensus 496 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 575 (856)
+.+..++..+...|++++|+..|+.+....|.++.++..++.++...|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 66 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----------------- 66 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------
Confidence 344455555555666666666665555555555555555555555555555555555555543
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHH------------HHH
Q 003020 576 GADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVE--PDVVVYG------------VLI 641 (856)
Q Consensus 576 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~------------~l~ 641 (856)
. +.+...+..+...+...|++++|...|+++.+..+. .+...+. .+.
T Consensus 67 ------------------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 127 (359)
T 3ieg_A 67 ------------------K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127 (359)
T ss_dssp ------------------C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------C-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 2 123344444555555555555555555555543210 1222332 236
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 642 NAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVR 721 (856)
Q Consensus 642 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 721 (856)
..+...|++++|+.+++++.+.. +.+...+..++..+...|++++|+..++++.+.. +.+...+..++..+...|+++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 78899999999999999998874 6788999999999999999999999999999854 356788999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHh
Q 003020 722 QAEEIFEIMKKKGDANEFTYAM------------MLIMYKRNGRFEEATRIAKQMRESGLISDL----LSYNNVLGLYAV 785 (856)
Q Consensus 722 ~A~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~ 785 (856)
+|...++++.+..|.+...+.. ++..+...|++++|+..++++++..|. ++ ..+..++.+|..
T Consensus 206 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~ 284 (359)
T 3ieg_A 206 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSK 284 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHH
Confidence 9999999999998888876653 377799999999999999999999877 55 346678999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcC
Q 003020 786 DGRFKDVIGTFKDMVNAAIQP-DDFTFKSLGAVLMKCG 822 (856)
Q Consensus 786 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~G 822 (856)
.|++++|+..++++++. .| +...+..+..++.+.|
T Consensus 285 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g 320 (359)
T 3ieg_A 285 DEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEE 320 (359)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcC
Confidence 99999999999999985 45 5678999999999999
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=5.4e-17 Score=187.54 Aligned_cols=639 Identities=11% Similarity=0.076 Sum_probs=408.3
Q ss_pred ccccccccccccccCCcccccccccccc-----------cccc------ccccc-ccCCchhHHHhhccccccHHHHhhH
Q 003020 93 SKNTWVDVRIGNERRTDVISAVCVNGEV-----------QTKC------STKWA-RYGGCIPSMLQALDTVKDLDEALKP 154 (856)
Q Consensus 93 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~-----------~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~al~~ 154 (856)
++.+.+++++...+.|.+.+.+++-.+. ++.. |--+. .--+-++.+..-|.+++. .+-++.
T Consensus 724 d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~-~~~ie~ 802 (1630)
T 1xi4_A 724 DPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNL-QKYIEI 802 (1630)
T ss_pred ChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCc-hhHHHH
Confidence 3446799999999999998887765541 1000 00000 000112333333333333 344566
Q ss_pred hhhhcChh----HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChh
Q 003020 155 WAENLSNK----ERSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINS 230 (856)
Q Consensus 155 ~~~~~~~~----~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 230 (856)
|-+..+|. .++.++...++-+.-..+...+. +..+ -.-|+...-+.++..--...++.-+..|.. ++.
T Consensus 803 yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~--~~~~-----~~~lv~~~ekrnrLkll~p~LE~~~~~g~~-~~~ 874 (1630)
T 1xi4_A 803 YVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVR--GQFS-----TDELVAEVEKRNRLKLLLPWLEARIHEGCE-EPA 874 (1630)
T ss_pred HHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhc--cCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHH
Confidence 65555544 34444433333333333333331 2122 345777777888888888888888888877 899
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhc
Q 003020 231 TYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVE 310 (856)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (856)
++|.+++.|...++-.+.. +.. |..-=..++.-||...|..-|.-.|++-. +.++.+.+-.
T Consensus 875 ~hnalakiyid~n~npe~f------L~~----n~~yd~~~vgkyce~rDp~la~iay~~g~---------~d~eli~vt~ 935 (1630)
T 1xi4_A 875 THNALAKIYIDSNNNPERF------LRE----NPYYDSRVVGKYCEKRDPHLACVAYERGQ---------CDLELINVCN 935 (1630)
T ss_pred HHHHHHHHHhccCCCHHHH------hhc----cCcccHHHHHHHHHhcCcchHHHHhcccC---------CcHHHHHHHh
Confidence 9999999998766443321 111 11111122333444444444444443210 0000000000
Q ss_pred cC-C------cCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHhcCCCHHHHHHHHHH
Q 003020 311 NG-S------HVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGI--VPTTVTFNTMIHIYGNNDQLAEVDSLIKK 381 (856)
Q Consensus 311 ~~-~------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 381 (856)
+. . ---...|...|..++.- +-+-=.++.++.....+ .-++.--...+++|...|.+.+|.+++++
T Consensus 936 ~n~l~k~~arylv~r~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEK 1010 (1630)
T 1xi4_A 936 ENSLFKSLSRYLVRRKDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEK 1010 (1630)
T ss_pred cchhHHHHHHHHHHhcCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHH
Confidence 00 0 00001134455544411 11111122222221111 12333445667888899999999999999
Q ss_pred HHhCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 003020 382 MEELHC--PPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEI 459 (856)
Q Consensus 382 ~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p 459 (856)
+.-.+- ..+....+.++....+. +..+..++..+... .+ ..-+...+...|.+++|..+|++...
T Consensus 1011 ivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----~d---~~eIA~Iai~lglyEEAf~IYkKa~~----- 1077 (1630)
T 1xi4_A 1011 IVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----YD---APDIANIAISNELFEEAFAIFRKFDV----- 1077 (1630)
T ss_pred HHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh----cc---HHHHHHHHHhCCCHHHHHHHHHHcCC-----
Confidence 883321 12445667777776666 55666666666542 12 33367778889999999999998631
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 003020 460 DEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAY 539 (856)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 539 (856)
.......+ +...+++++|.+.++++ ..+.+|..++.++...|++++|+..|.++ .+...|..++.++
T Consensus 1078 ~~~A~~VL---ie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~ 1144 (1630)
T 1xi4_A 1078 NTSAVQVL---IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAA 1144 (1630)
T ss_pred HHHHHHHH---HHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHH
Confidence 11122222 33778899999888876 45889999999999999999999999775 5688888999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH
Q 003020 540 GMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAE 619 (856)
Q Consensus 540 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 619 (856)
.+.|++++|++.|...++.. ++....+.++.+|++.+++++...+ ++ .++...+..+...|...|++++|.
T Consensus 1145 ~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1145 NTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999887764 3333344588899999888854433 22 346667778999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003020 620 EVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLE 699 (856)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 699 (856)
..|..+ ..|..++.++.+.|++++|.+.+++. .+..+|..+..+|...|++..|......
T Consensus 1216 ~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~----- 1275 (1630)
T 1xi4_A 1216 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH----- 1275 (1630)
T ss_pred HHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----
Confidence 999885 38889999999999999999999876 3568899999999999999999887653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCC-----CCC
Q 003020 700 ASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN--GRFEEATRIAKQMRESGL-----ISD 772 (856)
Q Consensus 700 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~-----~p~ 772 (856)
+..+...+..++..|.+.|.+++|+.+++..+...+.+...|.-|+.+|.+. ++..++++.|..-....+ . +
T Consensus 1276 Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e-~ 1354 (1630)
T 1xi4_A 1276 IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAE-Q 1354 (1630)
T ss_pred hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHH-H
Confidence 2245556678899999999999999999999988888888887777777765 467777777775554322 2 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 773 LLSYNNVLGLYAVDGRFKDVIGTF-------------KDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 773 ~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
...|..+...|.+.|+|+.|+... +..+.. ..+...|-..+..|...+
T Consensus 1355 ~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1355 AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHHhhC
Confidence 677999999999999999998322 222211 345566666666666555
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=2.6e-16 Score=181.96 Aligned_cols=588 Identities=10% Similarity=0.118 Sum_probs=318.3
Q ss_pred ccCCchhHHHhhccccccHHHHhhHhhhhcChhHHHHHHHhcCCHHHHHHHHHHhHHcC-CCCCCHHHHHHHHHHHHccC
Q 003020 130 RYGGCIPSMLQALDTVKDLDEALKPWAENLSNKERSIILKEQSSWERALEIFEWFKRQE-CHELNVIHYNIMLRTLGKAR 208 (856)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g 208 (856)
.-|.+-..++..-+.++.+..--..+-+.-++.....||.....+. +++.+|..... +-..++.--...+..|...|
T Consensus 922 ~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~R--R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~ag 999 (1630)
T 1xi4_A 922 ERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYR--RPLIDQVVQTALSETQDPEEVSVTVKAFMTAD 999 (1630)
T ss_pred cccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHH--HHHHHHHHHhhcccccCHHHhHHHHHHHHhCC
Confidence 3355666666666666666544444444455555566664433222 23334322210 01222333345566777788
Q ss_pred CHHHHHHHHHHHHhCCC--CcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHH
Q 003020 209 KWSYVQSLWDEMSVKGI--VPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEF 286 (856)
Q Consensus 209 ~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 286 (856)
.+.+|++++++....+- .-+....+.++....+. +..+..+..++.... + ..-+...+...|.+++|..+
T Consensus 1000 lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~I 1071 (1630)
T 1xi4_A 1000 LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAI 1071 (1630)
T ss_pred CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHH
Confidence 88888888888773311 01334455555554444 334444444443211 1 22355667777778888888
Q ss_pred HHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 003020 287 FKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIY 366 (856)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 366 (856)
|++... .....+.++. ..+++++|.++.++. -+..+|..+..++
T Consensus 1072 YkKa~~---------------------------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1072 FRKFDV---------------------------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQ 1115 (1630)
T ss_pred HHHcCC---------------------------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHH
Confidence 776531 1112222222 556677777776654 1355666777777
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 003020 367 GNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAE 446 (856)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 446 (856)
...|++++|...|.+. .|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++..
T Consensus 1116 l~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred HhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHH
Confidence 7777777777777553 356666667777777777777777776655543 33223334666777776666433
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 003020 447 ELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKK 526 (856)
Q Consensus 447 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 526 (856)
.+. . .++...+..++..|...|++++|...|.++ ..|..++.++.+.|++++|.+.++++.
T Consensus 1188 ~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~---- 1248 (1630)
T 1xi4_A 1188 EFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN---- 1248 (1630)
T ss_pred HHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC----
Confidence 332 1 234455556777777777777777777664 366667777777777777777776652
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 003020 527 LTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVI 606 (856)
Q Consensus 527 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 606 (856)
+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-....|+-+.
T Consensus 1249 -n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A 1249 -STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred -CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence 4567777777777777777776655432 2345555666777777777777777776665443 22334455555
Q ss_pred HHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHCCC
Q 003020 607 SSYMKL--GQLEMAEEVYKDMIRFNVEP------DVVVYGVLINAFADVGNVKQAQSYF-------------DAMESAGL 665 (856)
Q Consensus 607 ~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~ 665 (856)
..|++. ++..++.+.|..-.. ++| +...|..+.-.|.+.|+++.|.... ...+. -
T Consensus 1322 iLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--k 1397 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--K 1397 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--c
Confidence 555543 344455555543322 222 3456666777777777777666221 11111 1
Q ss_pred CCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHH-------------HHhCCCCCCHHHHHHHHHHHHHc
Q 003020 666 PPNAVIYNSLIKLYTKVG---------------YLKEAQETYKL-------------LRSLEASPDVYTSNCMIDLYSER 717 (856)
Q Consensus 666 ~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~-------------~~~~~~~p~~~~~~~l~~~~~~~ 717 (856)
..|+..|...+..|.... +++++.++|.+ +.. ..+...-..+.+.+...
T Consensus 1398 v~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~---~n~~~Vneal~el~iee 1474 (1630)
T 1xi4_A 1398 VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN---HNNKSVNESLNNLFITE 1474 (1630)
T ss_pred cccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHH---hcchhhhHHHHHHhcCc
Confidence 345555555555555444 44555444442 221 11222223334444444
Q ss_pred CCHHHHHHHH------------HHHHhCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 718 SMVRQAEEIF------------EIMKKKGDANEFTYAMML-IMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYA 784 (856)
Q Consensus 718 g~~~~A~~~~------------~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 784 (856)
.+++.-.... +++.+ ....-+..++ ..|.+.|+|+.|.+++++.. .|.-.+.+..
T Consensus 1475 ed~~~Lr~si~~~~nfd~~~La~~lek---heLl~frrIAa~ly~~n~~~~~ai~l~k~d~---------l~~dAm~~a~ 1542 (1630)
T 1xi4_A 1475 EDYQALRTSIDAYDNFDNISLAQRLEK---HELIEFRRIAAYLFKGNNRWKQSVELCKKDS---------LYKDAMQYAS 1542 (1630)
T ss_pred cchHHHHHHHhhccCcCHHHHHHHhhh---hhHHHHHHHHHHHHHhcCcHHHHHHHHHhcc---------CHHHHHHHHH
Confidence 4433211111 11111 1111123333 34455588888888877532 2444566777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 785 VDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLM 819 (856)
Q Consensus 785 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 819 (856)
+.|+.+.+.+++.-..+.| +...|...+..|.
T Consensus 1543 ~S~d~e~~e~ll~~F~~~~---~~E~f~a~Ly~cy 1574 (1630)
T 1xi4_A 1543 ESKDTELAEELLQWFLQEE---KRECFGACLFTCY 1574 (1630)
T ss_pred HcCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHh
Confidence 7888888877777777642 3344444443333
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=9.1e-18 Score=187.26 Aligned_cols=339 Identities=16% Similarity=0.107 Sum_probs=170.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHH----cC
Q 003020 404 NDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSI----RRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIE----AG 475 (856)
Q Consensus 404 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 475 (856)
.+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| ++..+..+..+|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 444444444444444432 33344444444444 444444444444444432 33333444444444 34
Q ss_pred ChHHHHHHHHHHHhcCCCCchhhHHHHHHHhh----cCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc----cCCHHH
Q 003020 476 MLEKSWLWFRRFHLAGDMSSEGYSANIDGYGE----RGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGM----GRNYDK 547 (856)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 547 (856)
++++|..+|++....+ +..++..++..|.. .++.++|.+.|+++.+. .++..+..+...|.. .+++++
T Consensus 130 ~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHH
Confidence 4444444444443221 23333334444433 34444444444444432 234455555555554 555666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHH
Q 003020 548 ACNLFDSMTSHGAVPDKCSYNSLIQILAG----ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMK----LGQLEMAE 619 (856)
Q Consensus 548 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 619 (856)
|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKAL 279 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 666666555542 34444455555543 455555555555555443 33444445555554 55666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHH
Q 003020 620 EVYKDMIRFNVEPDVVVYGVLINAFADV-----GNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVG---YLKEAQET 691 (856)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~ 691 (856)
..|++..+.+ +...+..+...|... +++++|+.+|++..+.| +...+..+...|...| ++++|+++
T Consensus 280 ~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~ 353 (490)
T 2xm6_A 280 EWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEW 353 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 6666655432 344455555555554 56666666666665543 3344555555555444 55566666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 003020 692 YKLLRSLEASPDVYTSNCMIDLYSE----RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEEATRIAKQ 763 (856)
Q Consensus 692 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 763 (856)
|++..+. .+...+..+...|.. .+++++|.+.|+++.+.+ ++.++..|+..|.. .+++++|...|++
T Consensus 354 ~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 354 FRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 6655553 234455555555555 556666666666655543 45555556666655 5566666666666
Q ss_pred HHHcCC
Q 003020 764 MRESGL 769 (856)
Q Consensus 764 ~~~~~~ 769 (856)
+.+.++
T Consensus 429 A~~~~~ 434 (490)
T 2xm6_A 429 ASTNDM 434 (490)
T ss_dssp HHHHHC
T ss_pred HHHCCC
Confidence 666553
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=2e-19 Score=189.59 Aligned_cols=290 Identities=12% Similarity=-0.043 Sum_probs=182.1
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 003020 461 EYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYG 540 (856)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 540 (856)
...+...+..+...|++++|..+|+++....|.+...+..++..+...|++++|...+.++....+.++.+|..++
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~---- 97 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG---- 97 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH----
Confidence 3344444444455555555555555554444444444444444444444444444444444444344444444444
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH
Q 003020 541 MGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGAD-LPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAE 619 (856)
Q Consensus 541 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 619 (856)
..+...| ++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 98 -------------------------------~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 145 (330)
T 3hym_B 98 -------------------------------CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAM 145 (330)
T ss_dssp -------------------------------HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHH
T ss_pred -------------------------------HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHH
Confidence 4444444 4444444444444332 223455666666777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003020 620 EVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLE 699 (856)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 699 (856)
..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|+..++++.+..
T Consensus 146 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 146 AAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 7777776653 2244556667777777777777777777777654 5566777777777777888888888777776521
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003020 700 --------ASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS 771 (856)
Q Consensus 700 --------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 771 (856)
.+.....+..++.++...|++++|...++++.+..|.+..++..++.++...|++++|.+.++++++..|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 302 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD- 302 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-
Confidence 12334567777888888888888888888888777778888888888888888888888888888887776
Q ss_pred CHHHHHHHHHHH-HhcCCH
Q 003020 772 DLLSYNNVLGLY-AVDGRF 789 (856)
Q Consensus 772 ~~~~~~~l~~~~-~~~g~~ 789 (856)
++..+..++.++ ...|+.
T Consensus 303 ~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 303 DTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CHHHHHHHHHHHHTTTTC-
T ss_pred chHHHHHHHHHHHHHhCch
Confidence 777788888777 344543
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=6.1e-17 Score=180.57 Aligned_cols=366 Identities=14% Similarity=0.115 Sum_probs=315.6
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHH----cCChHHHH
Q 003020 410 ASRYFWKMKEANLEPDIVSYRTLLYAYSI----RRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIE----AGMLEKSW 481 (856)
Q Consensus 410 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 481 (856)
+.+.+....+. .++..+..+...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 34555555553 477788888888887 899999999999998874 67788899999999 99999999
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHhh----cCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc----cCCHHHHHHHHH
Q 003020 482 LWFRRFHLAGDMSSEGYSANIDGYGE----RGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGM----GRNYDKACNLFD 553 (856)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 553 (856)
.+|++....+ ++.++..++..|.. .+++++|+..|+++.+.. ++..+..+...|.. .+++++|+..|+
T Consensus 100 ~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 100 IWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9999998653 67888889999988 899999999999988753 67788889999987 889999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 003020 554 SMTSHGAVPDKCSYNSLIQILAG----ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMK----LGQLEMAEEVYKDM 625 (856)
Q Consensus 554 ~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 625 (856)
+..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++.
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 999874 67888889999988 899999999999999875 66778888888886 78999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHH
Q 003020 626 IRFNVEPDVVVYGVLINAFAD----VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKV-----GYLKEAQETYKLLR 696 (856)
Q Consensus 626 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~ 696 (856)
.+.+ +...+..+...|.. .+++++|+.+|++..+.| +...+..+...|... +++++|+..|++..
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 8754 56677778888887 899999999999998765 567788888888887 89999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 003020 697 SLEASPDVYTSNCMIDLYSERS---MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 697 ~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 769 (856)
+.+ +...+..+...|...| ++++|++.++++.+. .++..+..|+..|.. .+++++|+..|+++.+.+
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 854 4566778888888766 899999999999987 578899999999999 899999999999999975
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 003020 770 ISDLLSYNNVLGLYAV----DGRFKDVIGTFKDMVNAAIQ 805 (856)
Q Consensus 770 ~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~ 805 (856)
++..+..++.+|.. .+++++|...|++..+.+..
T Consensus 398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 67899999999998 89999999999999997533
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=2.3e-17 Score=186.06 Aligned_cols=429 Identities=11% Similarity=0.061 Sum_probs=280.8
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 003020 344 FAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLE 423 (856)
Q Consensus 344 ~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 423 (856)
|++.++..+ -+...|..++.. .+.|++++|+.+|+++.+.. |.+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~P-~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhCC-CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 455555432 266688888874 67788888888888888653 6677788888888888888888888888888753
Q ss_pred CCHHhHHHHHHH-HHhcCCHHHHHH----HHHHHhcC-CCCC-CHhhHHHHHHHHHH---------cCChHHHHHHHHHH
Q 003020 424 PDIVSYRTLLYA-YSIRRMVCEAEE----LISEMDGG-GLEI-DEYTQSALTRMYIE---------AGMLEKSWLWFRRF 487 (856)
Q Consensus 424 ~~~~~~~~ll~~-~~~~g~~~~A~~----~~~~~~~~-~~~p-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~ 487 (856)
|+...|...+.. ....|+.++|.+ +|++.+.. |..| +...+...+..... .|+++.|..+|+++
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 577677666643 234566666554 66665542 4333 34455555554443 45666666666666
Q ss_pred HhcCCCCc--hhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH------HhCC
Q 003020 488 HLAGDMSS--EGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSM------TSHG 559 (856)
Q Consensus 488 ~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~~ 559 (856)
.. .|... ..|..........|. ..+ ..++. ...++++.|..++..+ .+..
T Consensus 157 l~-~P~~~~~~~~~~~~~~e~~~~~-~~~------------------~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CV-NPMINIEQLWRDYNKYEEGINI-HLA------------------KKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TT-SCCTTHHHHHHHHHHHHHHHCH-HHH------------------HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred Hh-chhhhHHHHHHHHHHHHHhhch-hHH------------------HHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 55 22211 112111111100000 000 00000 1234566677666652 2221
Q ss_pred ---CCCC--------HHHHHHHHHHHHcC----CCh----HHHHHHHHHHHHcCCCCChHhHHHHHHHHHh-------cC
Q 003020 560 ---AVPD--------KCSYNSLIQILAGA----DLP----HMAKRYLRKMQEAGLVSDCIPYCAVISSYMK-------LG 613 (856)
Q Consensus 560 ---~~p~--------~~~~~~ll~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g 613 (856)
++|+ ...|...+...... ++. +.+..+|++++... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 2333 13444444333221 222 36677888877753 4467778888777765 68
Q ss_pred CHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 003020 614 QLE-------MAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA-VIYNSLIKLYTKVGYL 685 (856)
Q Consensus 614 ~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 685 (856)
+++ +|..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++++.. +.+. ..|...+..+.+.|++
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCH
Confidence 876 889999998862124467888888888888999999999999998853 2233 5788888888888999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003020 686 KEAQETYKLLRSLEASPDVYTSNCMIDL-YSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQM 764 (856)
Q Consensus 686 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 764 (856)
++|.++|++..+... .+...|...+.. +...|++++|..+|+++++..|.++..|..++..+.+.|+.++|..+|+++
T Consensus 373 ~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 373 KSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 999999998887432 222233222222 335889999999999988888888889999999888899999999999999
Q ss_pred HHcCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 765 RESGLI-S--DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 765 ~~~~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
+...+. | ....|...+......|+.+.+..+++++++.
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 887654 1 2347888888888889999999999888873
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=4.3e-17 Score=183.82 Aligned_cols=429 Identities=8% Similarity=-0.019 Sum_probs=295.1
Q ss_pred HHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 003020 181 FEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGM 260 (856)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 260 (856)
|+.+.+.. |.+..+|..++. +.+.|++++|+.+|+++++..+. +...|...+..+.+.|++++|..+|+++++..
T Consensus 2 le~al~~~--P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~- 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV- 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred hhhHhhhC--CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence 45555553 568889999998 47889999999999999987544 78899999999999999999999999999874
Q ss_pred CccHHHHHHHHHH-HHhcCChhHHHH----HHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHh--
Q 003020 261 EPDEVTMGIVVQM-YKKAGEFQKAEE----FFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGK-- 333 (856)
Q Consensus 261 ~~~~~~~~~ll~~-~~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 333 (856)
|+...|...+.. ....|+++.|.+ +|++.... -...+.+...|...+....+
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~--------------------~g~~~~~~~~w~~~~~~~~~~~ 135 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK--------------------IGMEIMSYQIWVDYINFLKGVE 135 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH--------------------TTTSTTCHHHHHHHHHHHHHSC
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH--------------------CCCCcccHHHHHHHHHHHhcCC
Confidence 566677777753 345688887776 66654321 00112356788888887665
Q ss_pred -------cCCHHHHHHHHHHHHHCCCCCCH---HhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003020 334 -------AGQLKEASETFAQMLREGIVPTT---VTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAK 403 (856)
Q Consensus 334 -------~g~~~~A~~~~~~~~~~g~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 403 (856)
.|++++|..+|++.++. |+. ..|..........|. .+...++. .+
T Consensus 136 ~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~ 190 (530)
T 2ooe_A 136 AVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DR 190 (530)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TT
T ss_pred CcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--Hh
Confidence 78899999999999873 332 233322221100110 00111110 12
Q ss_pred cCChHHHHHHHHHHH------HcC---CCCC--------HHhHHHHHHHHHhc----CCH----HHHHHHHHHHhcCCCC
Q 003020 404 NDKISMASRYFWKMK------EAN---LEPD--------IVSYRTLLYAYSIR----RMV----CEAEELISEMDGGGLE 458 (856)
Q Consensus 404 ~g~~~~A~~~~~~m~------~~~---~~~~--------~~~~~~ll~~~~~~----g~~----~~A~~~~~~~~~~~~~ 458 (856)
.++++.|..++.++. +.. ++|+ ...|...+...... ++. ..+..+|++++... +
T Consensus 191 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p 269 (530)
T 2ooe_A 191 SRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-G 269 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-T
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-C
Confidence 234455555544421 111 2232 13444433222211 222 36667777776642 2
Q ss_pred CCHhhHHHHHHHHHH-------cCChH-------HHHHHHHHHHh-cCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhc
Q 003020 459 IDEYTQSALTRMYIE-------AGMLE-------KSWLWFRRFHL-AGDMSSEGYSANIDGYGERGHVLEAERAFICCQE 523 (856)
Q Consensus 459 p~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 523 (856)
.++..+..++..+.. .|+++ +|..+|++... ..|.+...|..++..+.+.|++++|..+|+++..
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 356667777766665 57766 78888888886 5777888888888888888899999999988888
Q ss_pred CCCCcH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCChHHHHHHHHHHHHcCCCCChHh
Q 003020 524 GKKLTV-LVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQI-LAGADLPHMAKRYLRKMQEAGLVSDCIP 601 (856)
Q Consensus 524 ~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 601 (856)
..+.+. .+|..++..+.+.|++++|..+|++..+.. +.+...+...+.. +...|++++|..+|+..++.. +.++..
T Consensus 350 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~ 427 (530)
T 2ooe_A 350 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEY 427 (530)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHH
T ss_pred ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHH
Confidence 777664 588888888888899999999999988752 2233333332222 335899999999999988764 346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003020 602 YCAVISSYMKLGQLEMAEEVYKDMIRFNV-EP--DVVVYGVLINAFADVGNVKQAQSYFDAMESA 663 (856)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (856)
|..++..+.+.|+.++|..+|++++..+. .| ....|...+......|+.+.+..++.++.+.
T Consensus 428 ~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 428 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999999999999988642 22 3558888888888899999999999988775
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.4e-18 Score=183.16 Aligned_cols=289 Identities=14% Similarity=0.077 Sum_probs=239.2
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 003020 526 KLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAV 605 (856)
Q Consensus 526 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 605 (856)
+.++..+..++..+...|++++|+.+|+++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3445566666777777777777777777776652 2244455566677777788888888888877754 3467788899
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003020 606 ISSYMKLG-QLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGY 684 (856)
Q Consensus 606 ~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 684 (856)
...+...| ++++|...|+++.+.. +.+...|..+...+...|++++|+..++++.+.. +.+...+..++..+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999999875 3467789999999999999999999999998874 4566778889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------CCCHHHHHHHHHHHHHcCCHH
Q 003020 685 LKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG---------DANEFTYAMMLIMYKRNGRFE 755 (856)
Q Consensus 685 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~ 755 (856)
+++|...|+++.+... .+...+..++..+...|++++|...++++.+.. +.+..++..++.++...|+++
T Consensus 175 ~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999998542 457888999999999999999999999998754 556789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH-HHcC
Q 003020 756 EATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD-DFTFKSLGAVL-MKCG 822 (856)
Q Consensus 756 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~-~~~G 822 (856)
+|+..++++++..|. ++..+..++.+|...|++++|...++++++. .|+ ...+..+..++ ...|
T Consensus 254 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g 319 (330)
T 3hym_B 254 EALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIG 319 (330)
T ss_dssp HHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhC
Confidence 999999999999887 8899999999999999999999999999874 564 55677777777 4455
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=3.1e-19 Score=191.41 Aligned_cols=307 Identities=9% Similarity=-0.074 Sum_probs=184.7
Q ss_pred HHHcCChHHHHH-HHHHHHhcCCCC----chhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCH
Q 003020 471 YIEAGMLEKSWL-WFRRFHLAGDMS----SEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNY 545 (856)
Q Consensus 471 ~~~~g~~~~a~~-~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 545 (856)
+...|++++|.. .|++.....+.+ ...+..++..+...|++++|+..|+++....|.+..+|..++.++...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 344455555555 555444333222 234455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 546 DKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDM 625 (856)
Q Consensus 546 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (856)
++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+... . ..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~-------~~ 178 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------A-------GG 178 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------h-------hh
Confidence 55555555554432 123444444444444444444444444444443211 11111000000 0 00
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003020 626 IRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPP--NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD 703 (856)
Q Consensus 626 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 703 (856)
..+ ...+..+.. +...|++++|...|+++.+.. +. +..++..++..+...|++++|+..|+++.+.. +.+
T Consensus 179 ----~~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 179 ----AGL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred ----hcc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 000 001112333 337788888888888887764 33 57888888888888899999998888888743 245
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------CH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS----------DL 773 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~~ 773 (856)
...+..++.++...|++++|+..++++.+..|.+..++..++.+|...|++++|+..++++++..|.. ..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 67788888888889999999999998888888888889999999999999999999999888876652 16
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 774 LSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 774 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
.+|..++.+|...|++++|..++++.++
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 7888899999999999998888775443
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.5e-18 Score=191.24 Aligned_cols=382 Identities=13% Similarity=-0.049 Sum_probs=168.8
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-----C-
Q 003020 356 TVTFNTMIHIYGNNDQLAEVDSLIKKMEEL--------HCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEA-----N- 421 (856)
Q Consensus 356 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~- 421 (856)
...|+.|..++...|++++|++.|++.++. ..+....+|+.+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666666666677777777776665532 11223445666666666666666666666655431 0
Q ss_pred -CCCCHHhHHHHHHHHHhc--CCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHH---HHcCChHHHHHHHHHHHhcCCCCc
Q 003020 422 -LEPDIVSYRTLLYAYSIR--RMVCEAEELISEMDGGGLEIDEYTQSALTRMY---IEAGMLEKSWLWFRRFHLAGDMSS 495 (856)
Q Consensus 422 -~~~~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~ 495 (856)
......++..+..++... +++++|++.|++.++..+. ++..+..+..++ ...++.++|+..+++....+|.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 001233444444333332 3455555555555543221 223333333222 223444445555555544444444
Q ss_pred hhhHHHHHHHh----hcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 496 EGYSANIDGYG----ERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLI 571 (856)
Q Consensus 496 ~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 571 (856)
.++..++..+. ..+++++|.+.++++....+....++..++..|.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~------------------------------- 258 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR------------------------------- 258 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH-------------------------------
Confidence 44443332222 2233344444444444444444444444444444
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003020 572 QILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVK 651 (856)
Q Consensus 572 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 651 (856)
..|++++|...+.++.+.. +.+..++..+..+|...+....+.. . ..........+.++
T Consensus 259 ----~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~----------~------~~~~~~~~~~~~~~ 317 (472)
T 4g1t_A 259 ----RKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLR----------E------NGMYGKRKLLELIG 317 (472)
T ss_dssp ----HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHH
T ss_pred ----HcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHH----------H------HHHHHHHHHHhhHH
Confidence 4444444444444444332 1123333333333321110000000 0 00000001112245
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHH
Q 003020 652 QAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVY--TSNCMID-LYSERSMVRQAEEIFE 728 (856)
Q Consensus 652 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~ 728 (856)
+|...+++..+.. +.+..++..++..+...|++++|+..|+++++....+... .+..+.. .....|++++|+..++
T Consensus 318 ~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ 396 (472)
T 4g1t_A 318 HAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI 396 (472)
T ss_dssp HHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5666666655543 3344455566666666666666666666666543222111 1222222 1234566666666666
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 729 IMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 729 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
++++..|.+.... +..+.+.+++++.++.+|. ++.+|..++.+|...|++++|++.|+++++.
T Consensus 397 kal~i~~~~~~~~----------~~~~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 397 EGVKINQKSREKE----------KMKDKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHSCCCCHHHH----------HHHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHhcCcccHHHH----------HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6666655543321 1223445556666666665 6667777777777777777777777777663
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=4.5e-18 Score=189.24 Aligned_cols=369 Identities=9% Similarity=-0.028 Sum_probs=216.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHc--------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCC-----
Q 003020 390 DTRTYNILIFLHAKNDKISMASRYFWKMKEA--------NLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGG----- 456 (856)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----- 456 (856)
....||.|...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|+..++++++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456777777777777777777777766431 112234566667777777777777777666654310
Q ss_pred -CCC-CHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHH
Q 003020 457 -LEI-DEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNV 534 (856)
Q Consensus 457 -~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 534 (856)
..+ ...++...+.++...| .+++++|+..|+++.+..|.++..+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~--------------------------------~~~y~~A~~~~~kal~~~p~~~~~~~~ 177 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCG--------------------------------GNQNERAKVCFEKALEKKPKNPEFTSG 177 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHC--------------------------------TTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHc--------------------------------cccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 000 1223333332222221 223455555555555544555555444
Q ss_pred HHHHH---HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 003020 535 MVKAY---GMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAG----ADLPHMAKRYLRKMQEAGLVSDCIPYCAVIS 607 (856)
Q Consensus 535 li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 607 (856)
+..++ ...++.++|++.|++..+.. +.+..++..+...+.. .+++++|.+.+++..+.. +.+..++..+..
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~ 255 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAK 255 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHH
Confidence 44432 23455566666666665542 1234444444433333 345666777777666653 345566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 608 SYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKE 687 (856)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 687 (856)
.|...|++++|+..|+++++.. +.+..++..+..+|...+... .... . ..........+.+++
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~~~~ 318 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLELIGH 318 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHH
T ss_pred HHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhhHHH
Confidence 7888888888888888877754 235556666665553221111 0100 0 000111122344688
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHH
Q 003020 688 AQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEF---TYAMMLIM-YKRNGRFEEATRIAKQ 763 (856)
Q Consensus 688 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~-~~~~g~~~~A~~~~~~ 763 (856)
|...|++..+... .+...+..++..+...|++++|++.|+++++..+++.. .+..++.. +...|++++|+..|++
T Consensus 319 A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 319 AVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp HHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999888542 34456778999999999999999999999988765443 33444433 4578999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 764 MRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 764 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
+++..+. +... .+....+..++++.++.. ..+..+|..++.++...|
T Consensus 398 al~i~~~-~~~~----------~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g 444 (472)
T 4g1t_A 398 GVKINQK-SREK----------EKMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNE 444 (472)
T ss_dssp HHHSCCC-CHHH----------HHHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHH
T ss_pred HHhcCcc-cHHH----------HHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 9998766 3221 122244556667766642 334567999999999999
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=9.4e-19 Score=187.68 Aligned_cols=309 Identities=14% Similarity=-0.003 Sum_probs=240.6
Q ss_pred HHHhcCCHHHHHH-HHHHHhcCCCC-C--CHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCC
Q 003020 435 AYSIRRMVCEAEE-LISEMDGGGLE-I--DEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGH 510 (856)
Q Consensus 435 ~~~~~g~~~~A~~-~~~~~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 510 (856)
++...|++++|++ .|++....... | +...+..++..+...|++++|...|+++....|.+..++..++..+...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5667799999999 88877654322 1 356788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 003020 511 VLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKM 590 (856)
Q Consensus 511 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 590 (856)
+++|+..|+++....|.+..++..++.++...|++++|+..|+++...... +...+..+... .. .
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 999999999999998999999999999999999999999999999986422 22222111000 00 0
Q ss_pred HHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003020 591 QEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEP-DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA 669 (856)
Q Consensus 591 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 669 (856)
..+ ...+..+...+ ..|++++|...|+++.+..+.. +..++..+...+...|++++|+..|+++.+.. +.+.
T Consensus 179 ----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 179 ----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 000 11112223333 7899999999999998864322 57899999999999999999999999998864 5678
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----------H
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN-----------E 738 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~ 738 (856)
.++..++.++...|++++|+..|+++.+... .+...+..++.+|...|++++|...++++.+..|.+ .
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 8999999999999999999999999988542 457788899999999999999999999998877666 7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
.+|..++.+|...|++++|..++++.++
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 8999999999999999999999876543
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.1e-18 Score=186.94 Aligned_cols=264 Identities=10% Similarity=-0.040 Sum_probs=162.0
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003020 497 GYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAG 576 (856)
Q Consensus 497 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 576 (856)
.+...+..+.+.|++++|+..|+++....|.+..+|..++.+|...|++++|+..|+++.+.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------ 128 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL------------------ 128 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------------
Confidence 34444555555555555555555555444444555555555555555555555555554443
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhc
Q 003020 577 ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVE---------PDVVVYGVLINAFADV 647 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~ 647 (856)
. +.+..++..+..+|...|++++|+..|+++++..+. .....+..+...+...
T Consensus 129 -----------------~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (365)
T 4eqf_A 129 -----------------Q-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190 (365)
T ss_dssp -----------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CC
T ss_pred -----------------C-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh
Confidence 2 123344444555555555555555555555443110 0122334456677777
Q ss_pred CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 648 GNVKQAQSYFDAMESAGLPP--NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEE 725 (856)
Q Consensus 648 g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 725 (856)
|++++|..+|+++.+.. +. +..++..++..+...|++++|+..|+++.+... .+..+|..++.+|...|++++|++
T Consensus 191 g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp HHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 78888888888777653 33 577777788888888888888888887777432 356677788888888888888888
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHH
Q 003020 726 IFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-----------DLLSYNNVLGLYAVDGRFKDVIG 794 (856)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~ 794 (856)
.++++.+..|.+..++..++.+|...|++++|+..++++++..|.. +...|..++.++...|+.+.+..
T Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8888887777778888888888888888888888888887765431 24677888888888888877776
Q ss_pred HHHH
Q 003020 795 TFKD 798 (856)
Q Consensus 795 ~~~~ 798 (856)
+.++
T Consensus 349 ~~~~ 352 (365)
T 4eqf_A 349 ANLG 352 (365)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6654
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=2.3e-18 Score=184.42 Aligned_cols=254 Identities=9% Similarity=-0.012 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 565 CSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAF 644 (856)
Q Consensus 565 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 644 (856)
..+..+...+.+.|++++|...++++++.. +.+..++..+..+|...|++++|+..|+++++.. +.+..+|..++.+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 346666666777777777777777776654 3467788999999999999999999999999875 44688999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPPN----------AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEAS-PDVYTSNCMIDL 713 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~ 713 (856)
...|++++|...|+++.+.. +.+ ...+..++..+...|++++|+..|+++.+.... ++...+..++..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999998753 111 233445688999999999999999999985432 268899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003020 714 YSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVI 793 (856)
Q Consensus 714 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 793 (856)
+...|++++|++.++++.+..|.++.+|..++.+|...|++++|++.++++++..|. ++.+|..++.+|...|++++|+
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887 8899999999999999999999
Q ss_pred HHHHHHHHcC--C-CC--------CHHHHHHHHHHHHHcC
Q 003020 794 GTFKDMVNAA--I-QP--------DDFTFKSLGAVLMKCG 822 (856)
Q Consensus 794 ~~~~~~~~~g--~-~p--------~~~~~~~l~~~~~~~G 822 (856)
..|+++++.. . .| +...|..+..++...|
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 9999998831 0 11 2466899999999999
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.6e-18 Score=180.60 Aligned_cols=387 Identities=14% Similarity=0.126 Sum_probs=154.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCC
Q 003020 164 RSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGG 243 (856)
Q Consensus 164 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 243 (856)
+..++...|++++|.++++.+. + +.+|..++.++.+.|++++|+..|.+. +|..+|..++.++...|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~-----~--~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCN-----E--PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCC-----C--hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC
Confidence 3445667788999999999872 2 248999999999999999999999653 47779999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhH
Q 003020 244 LKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYT 323 (856)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (856)
++++|+..++.+++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----------------------------~pn~~a 124 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-----------------------------GPNNAH 124 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-----------------------------CC----
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----------------------------CCcHHH
Confidence 999999988877774 4457788889999999999988887763 134468
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003020 324 YNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAK 403 (856)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 403 (856)
|+.++..|...|++++|...|..+ ..|..++.++.+.|++++|.+.+.++. ++.+|..++.+|..
T Consensus 125 ~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 125 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVD 189 (449)
T ss_dssp ------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHH
Confidence 888999999999999999998876 368888888888888888888888872 67888888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHc--CChHHHH
Q 003020 404 NDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEA--GMLEKSW 481 (856)
Q Consensus 404 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~ 481 (856)
.|+++.|......+. ..+.-...++..|.+.|.+++|+.+++..+... .-....++-+..+|++- +++.+.+
T Consensus 190 ~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl 263 (449)
T 1b89_A 190 GKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHL 263 (449)
T ss_dssp TTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888866554422 233334457777888888888888888877554 33444555555555543 3333333
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHH-------
Q 003020 482 LWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDS------- 554 (856)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------- 554 (856)
+.|..-....+ .++.. .....|..++-.|.+.++++.|....-+
T Consensus 264 ~~~~~~ini~k---------------------~~~~~--------~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~ 314 (449)
T 1b89_A 264 ELFWSRVNIPK---------------------VLRAA--------EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWK 314 (449)
T ss_dssp HHHSTTSCHHH---------------------HHHHH--------HTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCC
T ss_pred HHHHHHhcCcH---------------------HHHHH--------HHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhh
Confidence 33322211111 00000 1234455555555555555554442221
Q ss_pred ------HHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003020 555 ------MTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRF 628 (856)
Q Consensus 555 ------m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 628 (856)
+... ..+...|...+..|. +....++.-+...+... .| .+..+..+.+.|...-+...+..+...
T Consensus 315 ~~~f~~~~~k--v~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~--ld---~~r~v~~~~~~~~l~l~~~yl~~v~~~ 385 (449)
T 1b89_A 315 EGQFKDIITK--VANVELYYRAIQFYL--EFKPLLLNDLLMVLSPR--LD---HTRAVNYFSKVKQLPLVKPYLRSVQNH 385 (449)
T ss_dssp HHHHHHHHHH--CSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGG--CC---HHHHHHHHHHTTCTTTTHHHHHHHHTT
T ss_pred hHHHHHHHhc--hhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhc--cC---cHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 1111 234555666666665 22222222222222111 11 244555666777777777777666643
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 629 NVEPDVVVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 629 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
+ +..+=.++-..|....+++.-..-
T Consensus 386 n---~~~vnealn~l~ieeed~~~lr~s 410 (449)
T 1b89_A 386 N---NKSVNESLNNLFITEEDYQALRTS 410 (449)
T ss_dssp C---CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred h---HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 2 344444555556666666554433
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=3.1e-17 Score=168.24 Aligned_cols=252 Identities=10% Similarity=0.050 Sum_probs=153.8
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 003020 541 MGRNYDKACNLFDSMTSHGAVPDK--CSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMA 618 (856)
Q Consensus 541 ~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 618 (856)
..|++..|+..++++... .|+. .....+.+++...|+++.|+..++. .-+|+..++..+...+...|+.++|
T Consensus 11 ~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 345555555555544322 2221 2334445556666666666554432 1234455566666666666677777
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 619 EEVYKDMIRFNVEP-DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 619 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
++.+++++..+..| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.|+++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777766554323 445555666666777777777776665 45666667777777777777777777777766
Q ss_pred CCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 698 LEASPDVYTS---NCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLL 774 (856)
Q Consensus 698 ~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 774 (856)
.. |+.... ..++..+...|++++|..+|+++.+..|.++..++.++.++.+.|++++|++.++++++..|. ++.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~ 235 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPE 235 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH
Confidence 43 332211 112233334467777777777777777777777777777777777777777777777777766 777
Q ss_pred HHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHH
Q 003020 775 SYNNVLGLYAVDGRFKD-VIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 775 ~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g~~p~~~ 809 (856)
++..++.++...|++++ +.++++++++. .|+..
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 77777777777777765 45677777663 55544
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.7e-17 Score=172.90 Aligned_cols=237 Identities=12% Similarity=0.082 Sum_probs=88.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 003020 206 KARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEE 285 (856)
Q Consensus 206 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 285 (856)
+.|+.++|.+.++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678899999998872 3358999999999999999999999763 477788888989999999999999
Q ss_pred HHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 003020 286 FFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHI 365 (856)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 365 (856)
+++...+ ..+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..
T Consensus 83 yl~~ark------------------------~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~ 131 (449)
T 1b89_A 83 YLQMARK------------------------KARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDR 131 (449)
T ss_dssp --------------------------------------------------CHHHHTTTTT-------CC-----------
T ss_pred HHHHHHH------------------------hCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHH
Confidence 7776542 12345778888999999999998888775 3677789999999
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 003020 366 YGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEA 445 (856)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A 445 (856)
|...|.+++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|
T Consensus 132 ~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 132 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp -----CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHH
Confidence 99999999999999876 36888889999999999999988887 3778889999999999999888
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 003020 446 EELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGY 505 (856)
Q Consensus 446 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 505 (856)
......+ ...+.-...++..|.+.|++++|..++++.....+.....|+.++-.|
T Consensus 197 ~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~ 251 (449)
T 1b89_A 197 QMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 251 (449)
T ss_dssp HHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 5544432 223333445566666666666666666665544444444444443333
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=2.5e-17 Score=173.20 Aligned_cols=280 Identities=13% Similarity=0.006 Sum_probs=192.9
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003020 496 EGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILA 575 (856)
Q Consensus 496 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 575 (856)
..+...+..+...|++++|...|+++....+.+..++..++.++...|++++|...|+++.+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 4455566666666666666666666666656666666666666666666666666666665542 223444555555555
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCCHHHH
Q 003020 576 GADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVL-IN-AFADVGNVKQA 653 (856)
Q Consensus 576 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A 653 (856)
..|++++|...++++.+.... +...+..+... .|+......+ .. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 555555555555555443211 11111111000 0111111122 22 36677888999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003020 654 QSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKK 733 (856)
Q Consensus 654 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 733 (856)
...++++.+.. +.+..++..++..+...|++++|+..++++.+... .+...+..++..+...|++++|...++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999988764 55788888999999999999999999998887542 45778888999999999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 734 GDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-----------DLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 734 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
.|.+..++..++.++...|++++|++.++++++..|.. +..+|..++.+|...|++++|..++++.++
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999887653 467889999999999999999998876544
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=1.7e-16 Score=162.75 Aligned_cols=275 Identities=12% Similarity=0.104 Sum_probs=209.2
Q ss_pred HHhhcCCHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH
Q 003020 504 GYGERGHVLEAERAFICCQEGKKLT-VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHM 582 (856)
Q Consensus 504 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 582 (856)
.....|++..|+..++......|.+ ......+..+|...|++++|+..++. .-+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3445566666666666554443333 34556667888888888888876654 134566777888888888888888
Q ss_pred HHHHHHHHHHcCC-CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 583 AKRYLRKMQEAGL-VSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAME 661 (856)
Q Consensus 583 A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (856)
|++.++++...+. +.+...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|...|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888887764 34566677778889999999999999887 4577888899999999999999999999998
Q ss_pred HCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH
Q 003020 662 SAGLPPNAVIY---NSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANE 738 (856)
Q Consensus 662 ~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 738 (856)
+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.++.++...|++++|++.++++++..|.++
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 764 443211 223344455689999999999998863 36788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003020 739 FTYAMMLIMYKRNGRFEE-ATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTF 796 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 796 (856)
.++..++..+...|+.++ +.++++++++..|. ++.+.. ...+.+.++++..-|
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChHHHH----HHHHHHHHHHHHHHc
Confidence 999999999999999876 57899999999887 665443 345555555555433
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=6.8e-17 Score=169.83 Aligned_cols=281 Identities=12% Similarity=-0.015 Sum_probs=229.8
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 003020 460 DEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAY 539 (856)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 539 (856)
+...+...+..+...|++++|...|+++....|.+..++..++..+...|++++|...|+++....+.+..++..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHH--HHHhcCCHHH
Q 003020 540 GMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVIS--SYMKLGQLEM 617 (856)
Q Consensus 540 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~ 617 (856)
...|++++|+..|+++.+.... +...+..+... .++......+.. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 9999999999999999986322 22222221110 011111222212 3667788999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 618 AEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 618 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|+..|+++.+
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998865 3478889999999999999999999999998764 56788899999999999999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 698 LEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA------------NEFTYAMMLIMYKRNGRFEEATRIAKQMR 765 (856)
Q Consensus 698 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 765 (856)
... .+...+..++.++...|++++|.+.++++.+..|. +..+|..++.++...|++++|..++++.+
T Consensus 235 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 INP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 542 45778889999999999999999999999888777 68899999999999999999999987665
Q ss_pred H
Q 003020 766 E 766 (856)
Q Consensus 766 ~ 766 (856)
+
T Consensus 314 ~ 314 (327)
T 3cv0_A 314 E 314 (327)
T ss_dssp H
T ss_pred H
Confidence 4
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2e-15 Score=152.36 Aligned_cols=224 Identities=14% Similarity=0.074 Sum_probs=169.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVE--PD----VVVYGV 639 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~ 639 (856)
.+..+...+...|++++|...++++++.. .+..++..+..+|...|++++|+..|+++.+..+. ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44555555556666666666666655554 45566666666777777777777777776653211 11 467777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003020 640 LINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSM 719 (856)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 719 (856)
+...+...|++++|...|+++.+. .|+. ..+...|++++|...++.+..... .+...+..++..+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcC
Confidence 788888888888888888888774 3443 345666778888888888887431 245577788888899999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 720 VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
+++|+..++++.+..|.++.++..++.++...|++++|++.++++++..|. ++.+|..++.+|...|++++|...++++
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999888889999999999999999999999999999998877 7889999999999999999999999998
Q ss_pred HHc
Q 003020 800 VNA 802 (856)
Q Consensus 800 ~~~ 802 (856)
++.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=8.7e-16 Score=150.31 Aligned_cols=200 Identities=15% Similarity=0.059 Sum_probs=160.4
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003020 596 VSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSL 675 (856)
Q Consensus 596 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 675 (856)
+++...+..+...+.+.|++++|+..|+++++.. +.+...+..+..++.+.|++++|+..|++..+.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4566778888888889999999999999988865 3477888888889999999999999999988865 5677888888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003020 676 IKLYTKV-----------GYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMM 744 (856)
Q Consensus 676 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 744 (856)
+.++... |++++|+..|++..+..+ .+...+..+..++...|++++|+..|+++.+.. .++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 9999888 999999999999988542 356788889999999999999999999999988 889999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 745 LIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 745 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 800 (856)
+.+|...|++++|+..++++++..|. ++..+..++.++...|++++|+..+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999887 88999999999999999999999988764
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2e-15 Score=152.43 Aligned_cols=239 Identities=13% Similarity=0.024 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC--CC----hHhH
Q 003020 529 VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLV--SD----CIPY 602 (856)
Q Consensus 529 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~ 602 (856)
...|..++..+...|++++|+..|+++.+.. .+..++..+..++...|++++|...++++.+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777777888888888888888877765 67777888888888888888888888887764321 12 4678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003020 603 CAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKV 682 (856)
Q Consensus 603 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 682 (856)
..+...|...|++++|...|+++.+. .|+. ..+...|++++|...++++.... +.+...+..++..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88899999999999999999999885 3443 34666788999999999998864 45667889999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003020 683 GYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAK 762 (856)
Q Consensus 683 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 762 (856)
|++++|+..|+++.+... .+...+..++.++...|++++|+..++++.+..|.++.+|..++.++...|++++|.+.++
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999988543 4677888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcC------CCCCHHHHHHHHH
Q 003020 763 QMRESG------LISDLLSYNNVLG 781 (856)
Q Consensus 763 ~~~~~~------~~p~~~~~~~l~~ 781 (856)
++++.. |. +...+..+..
T Consensus 232 ~a~~~~~~~~~~p~-~~~~~~~l~~ 255 (258)
T 3uq3_A 232 AARTKDAEVNNGSS-AREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHTTTT-HHHHHHHHHH
T ss_pred HHHHhChhhcCCCc-hHHHHHHHHH
Confidence 999887 44 4455555543
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=1.6e-15 Score=166.14 Aligned_cols=346 Identities=12% Similarity=0.030 Sum_probs=197.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHH
Q 003020 397 LIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMV---CEAEELISEMDGGGLEIDEYTQSALTRMYIE 473 (856)
Q Consensus 397 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 473 (856)
+...+.+.|++++|.+.|++..+.| +...+..|...|...|+. ++|+..|++..+. ++..+..+..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4445555666666666666665543 223334444445555555 5666666555532 33344444443333
Q ss_pred cC-----ChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCH---
Q 003020 474 AG-----MLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNY--- 545 (856)
Q Consensus 474 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--- 545 (856)
.+ ++++|..+|++.. +.+.++ .+..+...|...+..
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa----------------------------------~~g~~~--A~~~Lg~~y~~~~~~~~~ 125 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAF----------------------------------ANGEGN--TLIPLAMLYLQYPHSFPN 125 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHH----------------------------------HTTCSS--CHHHHHHHHHHCGGGCTT
T ss_pred CCCCCCcCHHHHHHHHHHHH----------------------------------HCCCHH--HHHHHHHHHHhCCCCCCC
Confidence 33 3444555554444 432222 344444444433322
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC---CHHHHHHHH
Q 003020 546 DKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLG---QLEMAEEVY 622 (856)
Q Consensus 546 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~ 622 (856)
.++.+.+....+.| +......+...+...+.++.+......+.+.-...++..+..|...|...| ++++|+..|
T Consensus 126 ~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~ 202 (452)
T 3e4b_A 126 VNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQM 202 (452)
T ss_dssp CCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHH
Confidence 23444444444433 233455556666666644444443333322222234447777777787788 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHH
Q 003020 623 KDMIRFNVEPDVVVYGVLINAFADV----GNVKQAQSYFDAMESAGLPPNAVIYNSLIKL-Y--TKVGYLKEAQETYKLL 695 (856)
Q Consensus 623 ~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~ 695 (856)
++..+.| .++...+..+...|... +++++|+.+|++.. . -+...+..+... + ...+++++|+++|++.
T Consensus 203 ~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A 277 (452)
T 3e4b_A 203 EAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNG 277 (452)
T ss_dssp HHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHH
T ss_pred HHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 8888776 44555556666666544 67888888888876 3 355666666666 3 4578888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 003020 696 RSLEASPDVYTSNCMIDLYSERS-----MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEEATRIAKQMRE 766 (856)
Q Consensus 696 ~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 766 (856)
.+.+ +...+..|...|. .| ++++|++.|+++. +.++.++..|+..|.. ..++++|.+.|+++.+
T Consensus 278 a~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 278 RAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 7754 5556667777776 44 8888888888877 6677788888877776 3488888888888887
Q ss_pred cCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 003020 767 SGLISDLLSYNNVLGLYAV----DGRFKDVIGTFKDMVNAA 803 (856)
Q Consensus 767 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 803 (856)
.| ++.....++.+|.. ..++++|..+|++..+.|
T Consensus 351 ~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 351 NG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred hC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 65 45667778877764 457888888888888766
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=1.1e-14 Score=154.23 Aligned_cols=246 Identities=9% Similarity=0.021 Sum_probs=165.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQ-LEMAEEVYKDMIRFNVEPDVVVYGVLINAF 644 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 644 (856)
.|..+..++...|++++|+..++++++.. +.+..+|..+..++...|+ +++|+..|+++++..+ .+...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 34445555555555666666666555543 2345556666677777775 7777777777776542 3666777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHH
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE-RSMVRQA 723 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A 723 (856)
...|++++|+..|+++++.+ +.+...|..++.++...|++++|+..|+++++... .+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHH
Confidence 77777777777777777664 55667777777777777777777777777777442 345667777777777 4554555
Q ss_pred -----HHHHHHHHhCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------
Q 003020 724 -----EEIFEIMKKKGDANEFTYAMMLIMYKRNG--RFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDG--------- 787 (856)
Q Consensus 724 -----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------- 787 (856)
++.+++++...|.+..+|..++.++...| ++++|++.++++ +..+. ++..+..++.+|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHHhcccccchHH
Confidence 47777887777888888888888887777 577888887777 55554 6677788888887764
Q ss_pred CHHHHHHHHHHH-HHcCCCCCHH-HHHHHHHHHH
Q 003020 788 RFKDVIGTFKDM-VNAAIQPDDF-TFKSLGAVLM 819 (856)
Q Consensus 788 ~~~~A~~~~~~~-~~~g~~p~~~-~~~~l~~~~~ 819 (856)
.+++|+++|+++ ++ +.|... .|..+...+.
T Consensus 333 ~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 333 ILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 247788888887 55 456544 3555555443
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=1.5e-14 Score=147.30 Aligned_cols=246 Identities=10% Similarity=0.025 Sum_probs=182.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 003020 567 YNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEP--DVVVYGVLINAF 644 (856)
Q Consensus 567 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~ 644 (856)
+......+...|++++|+..++++++.. +.+...+..+..+|...|++++|+..|+++++....+ ...+|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445566667777777777777776653 2344567777778888888888888888887733222 234577888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAE 724 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 724 (856)
...|++++|+..|++..+.. +.+..++..++..|...|++++|+..|+++.+.. +.+...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887764 5566788888888999999999999988887753 245666777773444456999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 003020 725 EIFEIMKKKGDANEFTYAMMLIMYKRNGR---FEEATRIAKQMRESG---LISD----LLSYNNVLGLYAVDGRFKDVIG 794 (856)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~g~~~~A~~ 794 (856)
+.++++.+..|.+...+..++.++...|+ +++|+..++++++.. +.++ ..+|..++.+|...|++++|+.
T Consensus 163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 163 SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999998888888888889999988888 888999998888763 2221 2578888999999999999999
Q ss_pred HHHHHHHcCCCCCHHH-HHHHHHH
Q 003020 795 TFKDMVNAAIQPDDFT-FKSLGAV 817 (856)
Q Consensus 795 ~~~~~~~~g~~p~~~~-~~~l~~~ 817 (856)
.++++++. .|+... +..+...
T Consensus 243 ~~~~al~~--~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 243 AWKNILAL--DPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHH--CTTCHHHHHHHC--
T ss_pred HHHHHHhc--CccHHHHHHHhhhh
Confidence 99999884 566544 4444433
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=3.7e-14 Score=142.58 Aligned_cols=209 Identities=13% Similarity=0.042 Sum_probs=173.0
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003020 599 CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKL 678 (856)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 678 (856)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3456777778888888888888888888764 3467788888888888999999999998887764 5577888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 679 YTKVGYLKEAQETYKLLRSLEASP-DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 757 (856)
+...|++++|++.|+++.+.+..| +...+..++.++...|++++|.+.++++.+..|.+..++..++.++...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998887733334 4567778888889999999999999999988888889999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 758 TRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFK 812 (856)
Q Consensus 758 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 812 (856)
...++++++..+. +...+..++.++...|++++|.+.++++++. .|+...+.
T Consensus 195 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~ 246 (252)
T 2ho1_A 195 RQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHH
T ss_pred HHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 9999999988776 7788888999999999999999999999884 56555443
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=1.1e-14 Score=142.45 Aligned_cols=199 Identities=18% Similarity=0.110 Sum_probs=149.5
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003020 562 PDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLI 641 (856)
Q Consensus 562 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 641 (856)
++...+..+...+...|++++|...++++++.. +.+...+..+...+.+.|++++|+..|+++++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 445566666666667777777777777766653 3456667777777778888888888888877764 33666777777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003020 642 NAFADV-----------GNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCM 710 (856)
Q Consensus 642 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 710 (856)
.++... |++++|+..|++..+.. |.+...+..++.++...|++++|+..|+++.+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 778777 99999999999998864 5677889999999999999999999999999866 678888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 711 IDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMR 765 (856)
Q Consensus 711 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 765 (856)
+.++...|++++|+..++++.+..|.++.++..++.++...|++++|+..+++.-
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988764
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=8.9e-14 Score=136.87 Aligned_cols=212 Identities=10% Similarity=-0.012 Sum_probs=178.7
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIK 677 (856)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 677 (856)
+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45567788888889999999999999988764 3467788888999999999999999999988764 567788889999
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 678 LYTKV-GYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFE 755 (856)
Q Consensus 678 ~~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 755 (856)
.+... |++++|+..++++.+.+..|+ ...+..++.++...|++++|+..++++.+..|.+..++..++.++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 99999 999999999999887333343 5678888899999999999999999999988889999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003020 756 EATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKS 813 (856)
Q Consensus 756 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 813 (856)
+|.+.++++++..|..++..+..++..+...|+.++|..+++.+.+. .|+......
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~ 220 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 99999999999887237888888888999999999999999998874 566554433
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=2.3e-14 Score=151.76 Aligned_cols=254 Identities=10% Similarity=0.073 Sum_probs=210.5
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHcCCCCChHhHHH
Q 003020 526 KLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADL-PHMAKRYLRKMQEAGLVSDCIPYCA 604 (856)
Q Consensus 526 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ 604 (856)
+....+|+.+..++...|++++|+..|+++++.. +-+..+|..+..++...|+ +++|+..++++++.. +.+...|..
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~ 171 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 3446778888888888888999999988888753 2256778888888888886 999999999888865 346778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cC
Q 003020 605 VISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK-VG 683 (856)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g 683 (856)
+..++...|++++|+..|+++++.. +.+...|..+..++.+.|++++|+..|+++++.+ +.+...|+.++.++.. .|
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999876 3478899999999999999999999999999875 6688999999999998 66
Q ss_pred CHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC----
Q 003020 684 YLKEA-----QETYKLLRSLEASPDVYTSNCMIDLYSERS--MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG---- 752 (856)
Q Consensus 684 ~~~~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 752 (856)
..++| +..|+++++... .+...|..+..++...| ++++|++.++++ +..|.+..++..++.+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccc
Confidence 65777 588888888542 35678888888888888 689999999998 777999999999999999874
Q ss_pred -----CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhc
Q 003020 753 -----RFEEATRIAKQM-RESGLISDLLSYNNVLGLYAVD 786 (856)
Q Consensus 753 -----~~~~A~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~ 786 (856)
.+++|+++++++ .+.+|. ....|..++..+...
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQSK 366 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHH
Confidence 358999999999 888776 667888888776543
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=3.5e-14 Score=144.65 Aligned_cols=253 Identities=14% Similarity=0.048 Sum_probs=124.0
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003020 497 GYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAG 576 (856)
Q Consensus 497 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 576 (856)
.+...+..+...|++++|+..|+.+.+..|.+..++..++.++...|++++|+..|++..+....|+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------ 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA------------ 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH------------
Confidence 34444555555555555555555555555555555555555556666666666666655552211110
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 577 ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
....|..+...+...|++++|+..|+++.+.. +.+..+|..+...+...|++++|+..
T Consensus 73 ---------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 73 ---------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHH
Confidence 11124444444444455555555555544432 12334455555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhC
Q 003020 657 FDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSM---VRQAEEIFEIMKKK 733 (856)
Q Consensus 657 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~ 733 (856)
|++..+.. +.+...+..++..+...+++++|++.|+++.+... .+...+..+..++...|+ +++|...++++.+.
T Consensus 131 ~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 131 MEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 55554432 33444444444222233355555555555554321 223444445555555554 45555555554443
Q ss_pred C---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003020 734 G---DA-----NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVD 786 (856)
Q Consensus 734 ~---~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 786 (856)
. |. ...+|..++..|...|++++|++.++++++..|. ++..+..+.......
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT-NKKAIDGLKMKLEHH 268 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHC------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-HHHHHHHhhhhhccc
Confidence 2 11 1135556666666666666666666666666665 666666555544433
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=2.1e-14 Score=157.29 Aligned_cols=347 Identities=12% Similarity=0.029 Sum_probs=154.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCH---HHHHHHHHH
Q 003020 270 VVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQL---KEASETFAQ 346 (856)
Q Consensus 270 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~ 346 (856)
+...+.+.|++++|...|++.... + +..++..|...|...|+. ++|+..|++
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~----------------------g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~ 63 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL----------------------G---YSEAQVGLADIQVGTRDPAQIKQAEATYRA 63 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------------------T---CCTGGGTCC---------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC----------------------C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 344555666777777777665421 1 223444455555556666 677777777
Q ss_pred HHHCCCCCCHHhHHHHHHHHhcCC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH---HHHHHHHHH
Q 003020 347 MLREGIVPTTVTFNTMIHIYGNND-----QLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISM---ASRYFWKMK 418 (856)
Q Consensus 347 ~~~~g~~p~~~~~~~ll~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~ 418 (856)
..+. +...+..+...+...+ ++++|...|++..+.|. ...+..|...|...+..+. +.+.+....
T Consensus 64 A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~ 136 (452)
T 3e4b_A 64 AADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQ 136 (452)
T ss_dssp -----------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHH
T ss_pred HHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 6643 4445555555344333 56677777777766542 2255555556655444332 333333333
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCc
Q 003020 419 EANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAG---MLEKSWLWFRRFHLAGDMSS 495 (856)
Q Consensus 419 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~ 495 (856)
..| +...+..+...|...+.++++......+.+.-...++..+..+..+|...| +.++|+.+|++....++...
T Consensus 137 ~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a 213 (452)
T 3e4b_A 137 AAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA 213 (452)
T ss_dssp HHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH
T ss_pred HCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH
Confidence 332 334455555555555533333322222111111112235555555555555 55555555555555554444
Q ss_pred hhhHHHHHHHhhc----CCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 496 EGYSANIDGYGER----GHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLI 571 (856)
Q Consensus 496 ~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 571 (856)
..+..++..|... +++++|...|+++. +.++..+..+...|
T Consensus 214 ~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~-------------------------------- 258 (452)
T 3e4b_A 214 QRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLL-------------------------------- 258 (452)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHH--------------------------------
Confidence 4444444444333 44444544444444 23334444444431
Q ss_pred HHH--HcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 572 QIL--AGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLG-----QLEMAEEVYKDMIRFNVEPDVVVYGVLINAF 644 (856)
Q Consensus 572 ~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 644 (856)
+ ...+++++|...|++..+.| +...+..|...|. .| ++++|...|++.. +-+...+..+...|
T Consensus 259 --~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 259 --YDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIY 328 (452)
T ss_dssp --HHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHH
T ss_pred --HhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHH
Confidence 2 23445555555555544443 3444444444444 33 5566666665554 22444555555444
Q ss_pred Hh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 003020 645 AD----VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK----VGYLKEAQETYKLLRSLE 699 (856)
Q Consensus 645 ~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 699 (856)
.. ..++++|..+|++..+.|. ......|...|.. ..++++|..+|+...+.|
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 44 2256666666666655542 2233444444442 235666666666665544
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=4.8e-13 Score=136.27 Aligned_cols=223 Identities=17% Similarity=0.074 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003020 564 KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMK----LGQLEMAEEVYKDMIRFNVEPDVVVYGV 639 (856)
Q Consensus 564 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 639 (856)
..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +..++..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344445555555555555555555555552 234455566666666 777777777777777653 5666677
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 640 LINAFAD----VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK----VGYLKEAQETYKLLRSLEASPDVYTSNCMI 711 (856)
Q Consensus 640 l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 711 (856)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 7777777 777777777777777654 56677777777777 777888888877777744 455566677
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 712 DLYSE----RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 712 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
..|.. .+++++|+..++++.+.+ ++.++..++.+|.. .+++++|+..++++.+.+ ++..+..++.+|
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 77776 778888888888877663 56677778888888 888888888888888775 367778888888
Q ss_pred Hh----cCCHHHHHHHHHHHHHcC
Q 003020 784 AV----DGRFKDVIGTFKDMVNAA 803 (856)
Q Consensus 784 ~~----~g~~~~A~~~~~~~~~~g 803 (856)
.. .|++++|+..|++.++.|
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCcccCHHHHHHHHHHHHHcC
Confidence 87 888888888888887754
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=2.3e-14 Score=143.16 Aligned_cols=206 Identities=14% Similarity=0.149 Sum_probs=157.7
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIK 677 (856)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 677 (856)
....+..+...+...|++++|...|+++++.. +.+...+..+...+...|++++|+..++++.+.. +.+..++..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44556777778888888999999888888764 3467788888888889999999999999888764 557788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 678 LYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 678 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 757 (856)
.+...|++++|++.|+++.+... .+...+..++..+...|++++|...++++.+..|.+..++..++.++...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988887542 45677888888899999999999999999888888889999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 758 TRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 758 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
+..++++++..+. ++.++..++.+|...|++++|...++++++. .|+..
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 227 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHM 227 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchH
Confidence 9999999988876 7888999999999999999999999999884 55543
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=8e-13 Score=134.59 Aligned_cols=227 Identities=13% Similarity=0.030 Sum_probs=185.8
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChHhH
Q 003020 527 LTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAG----ADLPHMAKRYLRKMQEAGLVSDCIPY 602 (856)
Q Consensus 527 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 602 (856)
.++.++..+...+...|++++|+..|++..+. .+..++..+...+.. .+++++|...+++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 35666777777777777888888888877763 345667777777777 888888888888887765 66778
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003020 603 CAVISSYMK----LGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFAD----VGNVKQAQSYFDAMESAGLPPNAVIYNS 674 (856)
Q Consensus 603 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 674 (856)
..+...|.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 888888888 889999999999988864 77788888888888 899999999999998875 5677788
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003020 675 LIKLYTK----VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE----RSMVRQAEEIFEIMKKKGDANEFTYAMMLI 746 (856)
Q Consensus 675 l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 746 (856)
+...|.. .+++++|+..|++..+.+ +...+..+..+|.. .+++++|++.++++.+.++ +..+..++.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~ 226 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGA 226 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 8888888 899999999999988853 45677788888988 9999999999999988754 678888999
Q ss_pred HHHH----cCCHHHHHHHHHHHHHcCCC
Q 003020 747 MYKR----NGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 747 ~~~~----~g~~~~A~~~~~~~~~~~~~ 770 (856)
+|.. .+++++|++.++++.+.++.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 9998 99999999999999998754
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.62 E-value=7.2e-14 Score=132.78 Aligned_cols=174 Identities=14% Similarity=0.122 Sum_probs=149.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 633 DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMID 712 (856)
Q Consensus 633 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 712 (856)
+..+|..+...|...|++++|+..|++.++.. |.+..++..++.+|...|++++|+..++.+..... .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 56788888888888899999999998888765 56778888888899999999999999988877442 45666777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 713 LYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 792 (856)
.+...++++.|.+.++++....|.+..++..++.+|...|++++|++.|+++++..|. ++.+|..++.+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 8889999999999999999888999999999999999999999999999999999887 889999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHH
Q 003020 793 IGTFKDMVNAAIQPDDFTF 811 (856)
Q Consensus 793 ~~~~~~~~~~g~~p~~~~~ 811 (856)
+..|+++++ +.|+...|
T Consensus 161 ~~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 161 VKYFKKALE--KEEKKAKY 177 (184)
T ss_dssp HHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHHHh--CCccCHHH
Confidence 999999988 46665443
No 51
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=7.5e-16 Score=172.91 Aligned_cols=151 Identities=13% Similarity=0.125 Sum_probs=125.5
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003020 320 SSYTYNTLIDTYGKAGQLKEASETFAQMLR---EGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNI 396 (856)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 396 (856)
...|||+||++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 357999999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCh-HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC------HhhHHHHHH
Q 003020 397 LIFLHAKNDKI-SMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEID------EYTQSALTR 469 (856)
Q Consensus 397 li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~ 469 (856)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. ..++..+++ ..++.|+ ..+...+..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999998765544 344444444 3344443 334444555
Q ss_pred HHHHcC
Q 003020 470 MYIEAG 475 (856)
Q Consensus 470 ~~~~~g 475 (856)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555444
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=4.5e-14 Score=141.01 Aligned_cols=215 Identities=15% Similarity=0.095 Sum_probs=152.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFA 645 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 645 (856)
++..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...|+++.+.. +.+..++..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34444445555555555555555555432 2345566677777777788888888888777654 336777888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEE 725 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 725 (856)
..|++++|...++++.+.. +.+...+..++..+...|++++|+..++++.+... .+...+..++..+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888887764 55677888888888888999999988888877432 456778888888999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003020 726 IFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV 785 (856)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 785 (856)
.++++.+..|.+..++..++.+|...|++++|.+.++++++..|. ++..+..+......
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHHTC----
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHHHHHHhh
Confidence 999998888888899999999999999999999999999998887 77777766554443
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=5.2e-14 Score=143.55 Aligned_cols=245 Identities=11% Similarity=-0.011 Sum_probs=151.4
Q ss_pred cCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 003020 542 GRNYDKACNLFDSMTSHGAV---PDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMA 618 (856)
Q Consensus 542 ~g~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 618 (856)
.|++++|+..|+++.+.... .+..++..+...+...|++++|...++++++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 34555555555555543211 123345555555555666666666665555543 23455666677777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003020 619 EEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL 698 (856)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 698 (856)
...|+++++.. +.+..++..+...+...|++++|...|+++.+.. |+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77777777653 2356677777777777777777777777776643 33333333344445667778888877666653
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 699 EASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD----ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLL 774 (856)
Q Consensus 699 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 774 (856)
.. ++...+ .++..+...++.++|...++++....+ .+..++..++.+|...|++++|+..++++++..|. +.
T Consensus 174 ~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~- 249 (275)
T 1xnf_A 174 SD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF- 249 (275)
T ss_dssp SC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC-
T ss_pred CC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH-
Confidence 22 233333 355566667777778888877765543 23567888888888888888888888888887654 32
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 003020 775 SYNNVLGLYAVDGRFKDVIGTF 796 (856)
Q Consensus 775 ~~~~l~~~~~~~g~~~~A~~~~ 796 (856)
...+.++...|++++|++.+
T Consensus 250 --~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 --VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHhhHHHH
Confidence 33356777788888887766
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=6.6e-13 Score=133.39 Aligned_cols=207 Identities=15% Similarity=0.084 Sum_probs=158.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFA 645 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 645 (856)
.+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+...+.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 34445555555566666666666555543 3345667777777888888888888888887764 336778888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPP-NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAE 724 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 724 (856)
..|++++|..+++++.+.+..| +...+..++.++...|++++|...|+++.+... .+...+..++..+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888887732233 557788888888899999999999988887542 35677888888999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003020 725 EIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSY 776 (856)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 776 (856)
..++++.+..|.+...+..++..+...|++++|.+.++++.+..|. ++...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 246 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG-SLEYQ 246 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-SHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 9999999888888889999999999999999999999999988766 55443
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=5.8e-14 Score=152.38 Aligned_cols=292 Identities=12% Similarity=0.048 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHc----CCC-CChH
Q 003020 530 LVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPD----KCSYNSLIQILAGADLPHMAKRYLRKMQEA----GLV-SDCI 600 (856)
Q Consensus 530 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~ 600 (856)
..+...+..+...|++++|+..|+++.+.... + ..++..+...+...|++++|...++++++. +.. ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 33444444455555555555555554443111 1 123444445555555555555555544322 101 1133
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 003020 601 PYCAVISSYMKLGQLEMAEEVYKDMIRFNVE-PD----VVVYGVLINAFADVGN--------------------VKQAQS 655 (856)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~ 655 (856)
++..+...|...|++++|...++++++.... ++ ..++..+...+...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4556666666777777777776666542100 11 3366667777777777 777777
Q ss_pred HHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 003020 656 YFDAMESA----GLP-PNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLE-ASPD----VYTSNCMIDLYSERSMVRQAEE 725 (856)
Q Consensus 656 ~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~ 725 (856)
.+++..+. +.. ....++..++..+...|++++|+..++++.+.. -.++ ...+..++.++...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77766431 111 123467777888888888888888888776521 1122 2367778888888888888888
Q ss_pred HHHHHHhCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHHHHH
Q 003020 726 IFEIMKKKGDAN------EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-D----LLSYNNVLGLYAVDGRFKDVIG 794 (856)
Q Consensus 726 ~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~ 794 (856)
.++++.+..+.. ..++..++..|...|++++|++.++++++..+.. + ..++..++.+|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888877654222 5577888888889999999999888887653221 1 4577888888899999999999
Q ss_pred HHHHHHHc----CCCCC-HHHHHHHHHHHHHcC
Q 003020 795 TFKDMVNA----AIQPD-DFTFKSLGAVLMKCG 822 (856)
Q Consensus 795 ~~~~~~~~----g~~p~-~~~~~~l~~~~~~~G 822 (856)
.+++.++. +..+. ..++..+...+...|
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 88887762 22222 234667777777777
No 56
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.58 E-value=2.9e-11 Score=136.62 Aligned_cols=459 Identities=8% Similarity=-0.012 Sum_probs=300.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---hHHHHH
Q 003020 336 QLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDK---ISMASR 412 (856)
Q Consensus 336 ~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 412 (856)
...+-+..|++.+..+. -|..+|..++..+.+.+.++.++.+|+++... .|.....|...+..-.+.|. ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34455666677766654 38889999999888888999999999998865 36677888888888888888 899999
Q ss_pred HHHHHHHcC-CCCCHHhHHHHHHHHHhcCCH--------HHHHHHHHHHhc-CCC-CCC-HhhHHHHHHHHH--------
Q 003020 413 YFWKMKEAN-LEPDIVSYRTLLYAYSIRRMV--------CEAEELISEMDG-GGL-EID-EYTQSALTRMYI-------- 472 (856)
Q Consensus 413 ~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~--------~~A~~~~~~~~~-~~~-~p~-~~~~~~l~~~~~-------- 472 (856)
+|++.+... .+|++..|...+.-..+.++. +...++|+..+. .|. .++ ...+...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999988653 137777777776655555443 334467776654 354 443 345555554332
Q ss_pred -HcCChHHHHHHHHHHHhcCCCCc-hhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHH
Q 003020 473 -EAGMLEKSWLWFRRFHLAGDMSS-EGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACN 550 (856)
Q Consensus 473 -~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 550 (856)
..++++.+..+|++++....... ..|..........+.. .+.+.+.. ...+++.|..
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~-~a~~~~~e--------------------~~~~y~~Ar~ 263 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQL-TARRHIGE--------------------LSAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTT-THHHHHHH--------------------HHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcc-hHHHHHHH--------------------hhHHHHHHHH
Confidence 23345666677777663211111 1222111111100000 01111100 0123344445
Q ss_pred HHHHHHhC--CC----C-----------C-----C---HHHHHHHHHHHHcCC-------ChHHHHHHHHHHHHcCCCCC
Q 003020 551 LFDSMTSH--GA----V-----------P-----D---KCSYNSLIQILAGAD-------LPHMAKRYLRKMQEAGLVSD 598 (856)
Q Consensus 551 ~~~~m~~~--~~----~-----------p-----~---~~~~~~ll~~~~~~~-------~~~~A~~~~~~~~~~~~~~~ 598 (856)
.+.++... ++ + | + ...|...+..--..+ ..+.+..+|++++.. ++..
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~ 342 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFA 342 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTC
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCC
Confidence 44443211 11 0 1 0 123444443322222 123455678887775 3557
Q ss_pred hHhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------CCC
Q 003020 599 CIPYCAVISSYMKLGQLEMAE-EVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAG----------LPP 667 (856)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------~~p 667 (856)
...|...+..+...|+.++|. .+|++.+.. .+.+...|..++....+.|++++|.++|+++++.. .|.
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 788888888888899999997 999999875 35577788888888999999999999999987631 121
Q ss_pred -----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCC
Q 003020 668 -----------NAVIYNSLIKLYTKVGYLKEAQETYKLLRSL-EASPDVYTSNCMIDLYSER-SMVRQAEEIFEIMKKKG 734 (856)
Q Consensus 668 -----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 734 (856)
...+|...+....+.|..+.|..+|.++.+. +. +....|...+..-.+. ++.+.|..+|+..++..
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYF 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 1346788888888899999999999999885 22 2233343333333333 45899999999999988
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 735 DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS--DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFK 812 (856)
Q Consensus 735 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 812 (856)
|.++..|...+......|+.+.|..+|++++...+.+ ....|...+..-...|+.+.+.++.+++.+. .|+.....
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~ 578 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLE 578 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHH
Confidence 9899999889998889999999999999999887632 3367888888888999999999999999985 56655555
Q ss_pred HHHHHHHHcC
Q 003020 813 SLGAVLMKCG 822 (856)
Q Consensus 813 ~l~~~~~~~G 822 (856)
.+.+-|.-.+
T Consensus 579 ~f~~ry~~~~ 588 (679)
T 4e6h_A 579 EFTNKYKVLD 588 (679)
T ss_dssp HHHHHTCBTT
T ss_pred HHHHHhcCCc
Confidence 5555444444
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.58 E-value=3.2e-11 Score=136.23 Aligned_cols=465 Identities=9% Similarity=0.036 Sum_probs=290.9
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCC---HHHHHHHH
Q 003020 176 RALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGL---KEEAVCWL 252 (856)
Q Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~ 252 (856)
+-+..|+...... +.|..+|..++..+.+.+.++.+..+|++++..-+ .....|...+....+.|+ ++.+..+|
T Consensus 50 d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3555667666664 67899999999999999999999999999998743 377889999999999999 99999999
Q ss_pred HHHHhCCC-CccHHHHHHHHHHHHhcCCh--------hHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhH
Q 003020 253 ERMNEGGM-EPDEVTMGIVVQMYKKAGEF--------QKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYT 323 (856)
Q Consensus 253 ~~~~~~~~-~~~~~~~~~ll~~~~~~g~~--------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (856)
++.+...+ +|++..|...+....+.++. +...++|+.+... + ..-...+...
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~---------------v----G~~d~~s~~i 187 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK---------------C----AIFEPKSIQF 187 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH---------------T----TTTCSSCHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---------------h----CcccccchHH
Confidence 99998742 47888888888776666654 3345777765431 0 0001224567
Q ss_pred HHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 003020 324 YNTLIDTYG---------KAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTY 394 (856)
Q Consensus 324 ~~~li~~~~---------~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 394 (856)
|...+.... .+++++.+..+|++.+......-..+|..........+ ...+.+++.+.
T Consensus 188 W~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~------------ 254 (679)
T 4e6h_A 188 WNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL------------ 254 (679)
T ss_dssp HHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH------------
T ss_pred HHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh------------
Confidence 888887654 23456778888888875211111122222211110000 01122221111
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHH--cCCC---CCH-HhHHHHHHHHHhcC-CHHHHHHHHHHHh---c-CCCCCCHhh
Q 003020 395 NILIFLHAKNDKISMASRYFWKMKE--ANLE---PDI-VSYRTLLYAYSIRR-MVCEAEELISEMD---G-GGLEIDEYT 463 (856)
Q Consensus 395 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~~---~~~-~~~~~ll~~~~~~g-~~~~A~~~~~~~~---~-~~~~p~~~~ 463 (856)
..+++.|...+.++.. .++. |.. .+.+ . ...-..+ .....+.++.+.+ + .+...+...
T Consensus 255 ---------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~-~-~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~ 323 (679)
T 4e6h_A 255 ---------SAQYMNARSLYQDWLNITKGLKRNLPITLNQAT-E-SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDL 323 (679)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC-T-TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHH
T ss_pred ---------hHHHHHHHHHHHHHHHHHHhHhhccccccccch-h-ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchh
Confidence 1123334444443321 1110 000 0000 0 0000000 0001111111111 0 010001000
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHH-HHHHHHhcCCCCcHHHHHHHHHHHHcc
Q 003020 464 QSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAE-RAFICCQEGKKLTVLVFNVMVKAYGMG 542 (856)
Q Consensus 464 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~li~~~~~~ 542 (856)
..+.+..+|++++...|..++.|...+..+...|+.++|. .+|+++....|.+...|...+......
T Consensus 324 ------------~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~ 391 (679)
T 4e6h_A 324 ------------HKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELN 391 (679)
T ss_dssp ------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred ------------hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 1234456778888888888888888888888888888886 888888877777788888888888888
Q ss_pred CCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHh
Q 003020 543 RNYDKACNLFDSMTSHG---------AVPD------------KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIP 601 (856)
Q Consensus 543 g~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 601 (856)
|++++|.++|++++... ..|+ ..+|...+....+.|..+.|..+|..+++.-.......
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~l 471 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDI 471 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHH
Confidence 88888888888877531 0132 23577777777788888999999999887611223344
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 003020 602 YCAVISSYMKLG-QLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPP--NAVIYNSLIKL 678 (856)
Q Consensus 602 ~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~ 678 (856)
|...+..-.+.+ +.+.|..+|+..++. .+.+...|..++......|+.+.|..+|++......++ ....|...+..
T Consensus 472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 472 YLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFF 550 (679)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 444443334444 589999999998876 34467778888888888899999999999988764222 34678888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 003020 679 YTKVGYLKEAQETYKLLRSLE 699 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~~~ 699 (856)
-...|+.+.+.++++++.+.-
T Consensus 551 E~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 551 ESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 888899999999999988844
No 58
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.58 E-value=3.7e-15 Score=167.38 Aligned_cols=118 Identities=11% Similarity=0.107 Sum_probs=68.2
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003020 599 CIPYCAVISSYMKLGQLEMAEEVYKDMIR---FNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSL 675 (856)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 675 (856)
..+|+++|++|++.|+.++|.++|++|.+ .|+.||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34556666666666666666666655432 245556666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003020 676 IKLYTKVGY-LKEAQETYKLLRSLEASPDVYTSNCMIDLYSE 716 (856)
Q Consensus 676 ~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 716 (856)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 666666555 34555666666665666666666555544443
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=1.8e-13 Score=139.49 Aligned_cols=227 Identities=14% Similarity=0.059 Sum_probs=190.0
Q ss_pred HcCCChHHHHHHHHHHHHcCCC---CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003020 575 AGADLPHMAKRYLRKMQEAGLV---SDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVK 651 (856)
Q Consensus 575 ~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 651 (856)
...|++++|+..++++++.... .+..++..+...+...|++++|...|+++++.. +.+..+|..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457899999999999986421 245678899999999999999999999999875 347889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 652 QAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMK 731 (856)
Q Consensus 652 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 731 (856)
+|...|+++.+.. +.+..++..++.++...|++++|...|+++.+.. |+.......+..+...|++++|...++++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999864 5578899999999999999999999999998844 444444445555677899999999999998
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003020 732 KKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS---DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDD 808 (856)
Q Consensus 732 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 808 (856)
...|++...+. ++..+...++.++|+..++++.+..+.. ++.+|..++.+|...|++++|...|+++++. .|+.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 88877766655 7777888889999999999998765431 2578899999999999999999999999984 5643
No 60
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=1.4e-12 Score=128.12 Aligned_cols=208 Identities=10% Similarity=-0.012 Sum_probs=144.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFA 645 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 645 (856)
.+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444444555555555555444432 2234556666677777777777777777777653 335667777777777
Q ss_pred hc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 646 DV-GNVKQAQSYFDAMESAGLPP-NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQA 723 (856)
Q Consensus 646 ~~-g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 723 (856)
.. |++++|...++++.+.+..| +...+..++.++...|++++|+..|+++.+... .+...+..++.++...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 78 88888888888777622223 356777788888888888888888888777432 3466777888888888888888
Q ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 724 EEIFEIMKKKGD-ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYN 777 (856)
Q Consensus 724 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 777 (856)
.+.++++.+..| .+...+..+...+...|+.++|..+++.+.+..|. ++....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~ 220 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY-SEELQT 220 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 888888888777 78888888888888888888888888888877665 554443
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=6e-14 Score=152.66 Aligned_cols=270 Identities=10% Similarity=0.020 Sum_probs=179.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHc----C-CCCChHhH
Q 003020 532 FNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDK----CSYNSLIQILAGADLPHMAKRYLRKMQEA----G-LVSDCIPY 602 (856)
Q Consensus 532 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~ 602 (856)
+..+...+...|++++|+..|+++.+.... +. ..+..+...+...|++++|...++++++. + .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334444555555555555555555543211 11 23444555555555555555555554432 1 01123446
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHH
Q 003020 603 CAVISSYMKLGQLEMAEEVYKDMIRFN-----VEPDVVVYGVLINAFADVGN-----------------VKQAQSYFDAM 660 (856)
Q Consensus 603 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~ 660 (856)
..+...|...|++++|...|+++++.. .+....++..+...|...|+ +++|+..+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 666677777777777777777765431 11123467777777888888 88888877776
Q ss_pred HHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003020 661 ESA----GL-PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-SPD----VYTSNCMIDLYSERSMVRQAEEIFEIM 730 (856)
Q Consensus 661 ~~~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 730 (856)
.+. +. +....++..++..+...|++++|+..|++..+... .++ ...+..++.+|...|++++|.+.++++
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 442 11 11235778888889999999999999988766211 122 236778888999999999999999988
Q ss_pred HhCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 731 KKKGDA------NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-----DLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 731 ~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
....+. ...++..++.+|...|++++|+..++++++..... ...++..++.+|...|++++|...++++
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 765532 25678889999999999999999999998753221 1357888999999999999999999999
Q ss_pred HHc
Q 003020 800 VNA 802 (856)
Q Consensus 800 ~~~ 802 (856)
++.
T Consensus 370 l~~ 372 (411)
T 4a1s_A 370 LQL 372 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 884
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=4e-14 Score=153.62 Aligned_cols=301 Identities=15% Similarity=0.086 Sum_probs=192.6
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 003020 461 EYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYG 540 (856)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 540 (856)
...+...+..+...|++++|...|+++....+.+.... ..++..++..+.
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------~~~~~~l~~~~~ 58 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTL------------------------------SAIYSQLGNAYF 58 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHH------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHH------------------------------HHHHHHHHHHHH
Confidence 33444555555566666666666655554444332100 234444455555
Q ss_pred ccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----hHhHHHHHHHHH
Q 003020 541 MGRNYDKACNLFDSMTSH----GAVP-DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLV-SD----CIPYCAVISSYM 610 (856)
Q Consensus 541 ~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~ 610 (856)
..|++++|+..|++.... +..| ...++..+...+...|++++|...+.++++.... .+ ..++..+...|.
T Consensus 59 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 138 (406)
T 3sf4_A 59 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 138 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 555555555555443321 1111 1234455555555566666666555554432100 11 335667777777
Q ss_pred hcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003020 611 KLGQ--------------------LEMAEEVYKDMIRF----NVEP-DVVVYGVLINAFADVGNVKQAQSYFDAMESAGL 665 (856)
Q Consensus 611 ~~g~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 665 (856)
..|+ +++|...+++..+. +..+ ...++..+...+...|++++|...+++..+...
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 7777 88888887776542 1111 234778888889999999999999988865210
Q ss_pred -CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003020 666 -PPN----AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-SPD----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD 735 (856)
Q Consensus 666 -~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 735 (856)
.++ ..++..++..+...|++++|...+++..+... .++ ..++..++..|...|++++|.+.++++.+..+
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 112 24788889999999999999999988775211 112 45778889999999999999999998876542
Q ss_pred --CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHH
Q 003020 736 --AN----EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-----DLLSYNNVLGLYAVDGRFKD 791 (856)
Q Consensus 736 --~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~ 791 (856)
.+ ..++..++.+|...|++++|.+.++++++..... ...++..++.++...|+...
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 22 5688899999999999999999999988752211 24678889999998887643
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=1.3e-13 Score=145.10 Aligned_cols=268 Identities=12% Similarity=0.036 Sum_probs=177.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHc----CCC-CChHhHHH
Q 003020 534 VMVKAYGMGRNYDKACNLFDSMTSHGAVPD----KCSYNSLIQILAGADLPHMAKRYLRKMQEA----GLV-SDCIPYCA 604 (856)
Q Consensus 534 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~ 604 (856)
..+..+...|++++|+..|+++.+.... + ...+..+...+...|++++|...++++.+. +.. ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3344444555555555555555443111 1 233444555555555555555555544322 111 12334666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 003020 605 VISSYMKLGQLEMAEEVYKDMIRFNV-EPD----VVVYGVLINAFADVGN--------------------VKQAQSYFDA 659 (856)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~ 659 (856)
+...|...|++++|...++++.+... .++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 67777777777777777777654211 012 3366777777777787 8888888777
Q ss_pred HHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003020 660 MESA----GL-PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-SPD----VYTSNCMIDLYSERSMVRQAEEIFEI 729 (856)
Q Consensus 660 ~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 729 (856)
.... +. +....++..++..+...|++++|...++++.+... .++ ...+..++..+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6432 11 11235678888888999999999999988765211 122 33677888889999999999999998
Q ss_pred HHhCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 730 MKKKGDAN------EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI-SD----LLSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 730 ~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
+....+.. ..++..++.++...|++++|...++++++..+. .+ ..++..++.+|...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 87654222 567888999999999999999999998875322 12 35788999999999999999999999
Q ss_pred HHHc
Q 003020 799 MVNA 802 (856)
Q Consensus 799 ~~~~ 802 (856)
+++.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9884
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=7.7e-13 Score=145.87 Aligned_cols=201 Identities=9% Similarity=0.020 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003020 615 LEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNV-KQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYK 693 (856)
Q Consensus 615 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 693 (856)
+++++..+++..... +.+...+..+...+...|++ ++|+..|++..+.. +.+...|..++.+|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444433321 22444555555555555555 55555555554442 3334555555555555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc--------CCHHH
Q 003020 694 LLRSLEASPDVYTSNCMIDLYSER---------SMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN--------GRFEE 756 (856)
Q Consensus 694 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 756 (856)
++.+.. |+...+..+..++... |++++|++.++++.+..|.+..+|..++.+|... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 555422 3344445555555555 5555555555555555555555555555555555 55555
Q ss_pred HHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC
Q 003020 757 ATRIAKQMRESGL---ISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD-DFTFKSLGAVLMKCG 822 (856)
Q Consensus 757 A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~G 822 (856)
|++.|+++++..| . ++..|..++.+|...|++++|+..|+++++. .|+ ...+..+..++...|
T Consensus 240 A~~~~~~al~~~p~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASS-NPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp HHHHHHHHHHHCGGGGG-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 5555555555544 3 4555555555555555555555555555542 333 223445555555555
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=1.5e-12 Score=123.63 Aligned_cols=170 Identities=15% Similarity=0.094 Sum_probs=153.8
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIK 677 (856)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 677 (856)
+..+|..+...|...|++++|+..|+++++.. +-+..++..+..+|.+.|++++|+..+....... +.+...+..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56789999999999999999999999999875 3478899999999999999999999999998764 567788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 678 LYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 678 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 757 (856)
.+...++++.|...+++..+... .+...+..++.++...|++++|++.|+++.+..|.++.+|..++.+|...|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999888542 45778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 003020 758 TRIAKQMRESGLI 770 (856)
Q Consensus 758 ~~~~~~~~~~~~~ 770 (856)
++.|+++++..|.
T Consensus 161 ~~~~~~al~~~p~ 173 (184)
T 3vtx_A 161 VKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHTTHH
T ss_pred HHHHHHHHhCCcc
Confidence 9999999997643
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=4.3e-13 Score=147.91 Aligned_cols=213 Identities=12% Similarity=0.047 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 581 HMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQL-EMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDA 659 (856)
Q Consensus 581 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (856)
+.+...++..... .+.+...+..+...|...|++ ++|+..|+++++.. +.+...|..+..+|...|++++|...|++
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444555544433 234666777788888888888 88888888888764 33677888888888888899999998888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHHH
Q 003020 660 MESAGLPPNAVIYNSLIKLYTKV---------GYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSER--------SMVRQ 722 (856)
Q Consensus 660 ~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~ 722 (856)
..+.. |+...+..+..++... |++++|++.|+++.+... .+...|..++.+|... |++++
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 88764 6678888888888888 999999999999888542 4577888888888888 99999
Q ss_pred HHHHHHHHHhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 723 AEEIFEIMKKKGD---ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 723 A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
|++.|+++.+..| .++.+|..++.+|...|++++|++.|+++++..|. ++..+..++.++...|++++|+..+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999888 89999999999999999999999999999999987 8889999999999999999998876544
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=1.8e-13 Score=148.85 Aligned_cols=238 Identities=15% Similarity=0.072 Sum_probs=157.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC-----CCCChH
Q 003020 531 VFNVMVKAYGMGRNYDKACNLFDSMTSH----GA-VPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAG-----LVSDCI 600 (856)
Q Consensus 531 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~ 600 (856)
++..++..|...|++++|+..|++..+. +. .....++..+...+...|++++|...++++++.. .+....
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 3444444444445555555444443321 00 1122344455555555555555555555544321 011233
Q ss_pred hHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003020 601 PYCAVISSYMKLGQ-----------------LEMAEEVYKDMIRF----NVEP-DVVVYGVLINAFADVGNVKQAQSYFD 658 (856)
Q Consensus 601 ~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 658 (856)
++..+...|...|+ +++|+..+++..+. +..+ ...++..+...+...|++++|...++
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 56677777777777 78887777776542 1111 23477788888999999999999998
Q ss_pred HHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003020 659 AMESAGL-PPN----AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-SPD----VYTSNCMIDLYSERSMVRQAEEIFE 728 (856)
Q Consensus 659 ~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~ 728 (856)
+..+... .++ ..++..++.+|...|++++|+..|+++.+... ..+ ...+..+..++...|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8865310 012 23788889999999999999999988776211 111 4577888899999999999999999
Q ss_pred HHHhCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003020 729 IMKKKG------DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESG 768 (856)
Q Consensus 729 ~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 768 (856)
++.... +....++..++.+|...|++++|.+.++++++..
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 887654 1224578889999999999999999999999874
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=1.8e-11 Score=126.86 Aligned_cols=218 Identities=11% Similarity=0.036 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 003020 581 HMAKRYLRKMQEAGLVSDCIPYCAVISSYM-------KLGQL-------EMAEEVYKDMIR-FNVEPDVVVYGVLINAFA 645 (856)
Q Consensus 581 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 645 (856)
+.|...|+++++.. +.++..|..++..+. +.|++ ++|..+|++.++ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34445555555432 334445555555443 34664 788888888887 33 335668888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPPNAV-IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYS-ERSMVRQA 723 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A 723 (856)
..|++++|..+|+++++.. +.+.. .|..++..+.+.|++++|..+|+++.+... ++...|...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888753 22333 788888888888888888888888887543 33344443333322 26888888
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 724 EEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESG-LIS--DLLSYNNVLGLYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 800 (856)
..+|+++++..|.++..|..++..+.+.|++++|..+|+++++.. ..| ....|..++..+.+.|++++|..++++++
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888863 222 45678888888888888888888888888
Q ss_pred Hc
Q 003020 801 NA 802 (856)
Q Consensus 801 ~~ 802 (856)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=6.8e-13 Score=139.48 Aligned_cols=268 Identities=15% Similarity=0.102 Sum_probs=170.5
Q ss_pred HHHHhhcCCHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 003020 502 IDGYGERGHVLEAERAFICCQEGKKLT----VLVFNVMVKAYGMGRNYDKACNLFDSMTSH----GAVP-DKCSYNSLIQ 572 (856)
Q Consensus 502 ~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~ 572 (856)
+..+...|++++|+..|+++....+.+ ..++..++..+...|++++|+..+++..+. +..| ...++..+..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 333444444444444444444333333 234455555555555555555555554322 1111 1334555556
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCC-CC----hHhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 003020 573 ILAGADLPHMAKRYLRKMQEAGLV-SD----CIPYCAVISSYMKLGQ--------------------LEMAEEVYKDMIR 627 (856)
Q Consensus 573 ~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~ 627 (856)
.+...|++++|...+.+..+.... ++ ..++..+...|...|+ +++|...+++...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 666666666666666665442110 11 2356667777777777 7888877777653
Q ss_pred C----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 628 F----NVEP-DVVVYGVLINAFADVGNVKQAQSYFDAMESA----GLP-PNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 628 ~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
. +..+ ...++..+...+...|++++|...+++..+. +.+ ....++..++..+...|++++|...+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 1111 2347777888888999999999999887653 101 1124788888999999999999999988765
Q ss_pred CCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 698 LEA-SPD----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD--A----NEFTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 698 ~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
... .++ ...+..+...+...|++++|...++++.+..+ . ...++..++.+|...|++++|...++++++
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 211 112 45677888899999999999999998876541 1 245788899999999999999999999998
Q ss_pred cCC
Q 003020 767 SGL 769 (856)
Q Consensus 767 ~~~ 769 (856)
...
T Consensus 332 ~~~ 334 (338)
T 3ro2_A 332 ISR 334 (338)
T ss_dssp C--
T ss_pred HHH
Confidence 753
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=2.8e-12 Score=146.76 Aligned_cols=166 Identities=17% Similarity=0.086 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 633 DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMID 712 (856)
Q Consensus 633 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 712 (856)
+..+|+.+...+.+.|++++|+..|++.++.. +-+..+|..++.+|.+.|++++|++.|+++++... .+...|..++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45688899999999999999999999998864 55678899999999999999999999999988542 34778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 713 LYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 792 (856)
+|...|++++|++.|+++++..|.+..+|..++.+|...|++++|++.|+++++..|. ++..|..++.+|...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988 889999999999999999999
Q ss_pred HHHHHHHHH
Q 003020 793 IGTFKDMVN 801 (856)
Q Consensus 793 ~~~~~~~~~ 801 (856)
.+.++++++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998876
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=7.2e-13 Score=137.72 Aligned_cols=247 Identities=15% Similarity=0.135 Sum_probs=125.5
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 003020 526 KLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSH-------GAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSD 598 (856)
Q Consensus 526 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 598 (856)
+....++..++..+...|++++|+.+|+++.+. ..+....++..+...+...|++++|...++++++..
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---- 99 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR---- 99 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----
Confidence 344677788888888888888888888877652 111123344445555555555555555555444320
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHH
Q 003020 599 CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESA------GL-PPNAVI 671 (856)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~p~~~~ 671 (856)
+.......+....++..+...+...|++++|...++++.+. +. +....+
T Consensus 100 ------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 100 ------------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp ------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ------------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 00000000112234444555555555555555555554432 11 112244
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------C
Q 003020 672 YNSLIKLYTKVGYLKEAQETYKLLRSL------EASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKG---------D 735 (856)
Q Consensus 672 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~ 735 (856)
+..++..+...|++++|+++|+++.+. +..|. ...+..++.+|...|++++|.+.++++.+.. +
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 555555666666666666666555442 11121 2345555666666666666666666655421 1
Q ss_pred C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 736 A------NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 736 ~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
. ....+..+...+...+.+.+|...+++.....+. ...++..++.+|...|++++|..+++++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 1122333344445556667777777777765544 567788888888888888888888888776
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=5.4e-12 Score=135.60 Aligned_cols=229 Identities=10% Similarity=0.000 Sum_probs=171.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHc----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CHHHHH
Q 003020 570 LIQILAGADLPHMAKRYLRKMQEA----GLVS-DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVE-P-----DVVVYG 638 (856)
Q Consensus 570 ll~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~~~~ 638 (856)
....+...|++++|...++++.+. +..+ ...++..+...|...|++++|+..++++++.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555677788888888888887764 1111 2346788888889999999999999888753111 1 235788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHH
Q 003020 639 VLINAFADVGNVKQAQSYFDAMESA----GLPP-NAVIYNSLIKLYTKVGYLKEAQETYKLLRSL----EA-SPDVYTSN 708 (856)
Q Consensus 639 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~ 708 (856)
.+...|...|++++|...|++..+. +-++ ...++..++.+|...|++++|+..|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888999999999999999888653 1111 1247888999999999999999999888762 22 23356788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKG-----DANEFTYAMMLIMYKRNGR---FEEATRIAKQMRESGLIS-DLLSYNNV 779 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l 779 (856)
.++.++...|++++|.+.++++.+.. +.....+..++..+...|+ +++|+.++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 89999999999999999999887653 2223346778888889998 77777777766 2222 23577889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 003020 780 LGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 780 ~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+.+|...|++++|...++++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999877
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=7.9e-11 Score=122.01 Aligned_cols=221 Identities=12% Similarity=0.031 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCCCh-------HHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 003020 546 DKACNLFDSMTSHGAVPDKCSYNSLIQILA-------GADLP-------HMAKRYLRKMQEAGLVSDCIPYCAVISSYMK 611 (856)
Q Consensus 546 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 611 (856)
++|+.+|++.+... +.+...|..++..+. ..|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555555555431 223444444444443 34554 6777777777763123345567777788888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 003020 612 LGQLEMAEEVYKDMIRFNVEPDVV-VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYT-KVGYLKEAQ 689 (856)
Q Consensus 612 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~ 689 (856)
.|++++|..+|+++++..+. +.. +|..++..+.+.|++++|..+|++..+.+ +++...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888875321 333 78888888888888888888888887764 444555544433322 368888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 690 ETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG--D--ANEFTYAMMLIMYKRNGRFEEATRIAKQMR 765 (856)
Q Consensus 690 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 765 (856)
.+|+++++... .+...|..++..+.+.|++++|..+|+++.... + .....|..++..+...|+.++|..++++++
T Consensus 190 ~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888877432 356777888888888888888888888888852 3 256788888888888888888888888888
Q ss_pred HcCCC
Q 003020 766 ESGLI 770 (856)
Q Consensus 766 ~~~~~ 770 (856)
+..|.
T Consensus 269 ~~~p~ 273 (308)
T 2ond_A 269 TAFRE 273 (308)
T ss_dssp HHTTT
T ss_pred HHccc
Confidence 87765
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.43 E-value=1.4e-11 Score=116.79 Aligned_cols=165 Identities=16% Similarity=0.072 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003020 635 VVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLY 714 (856)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 714 (856)
..+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456667777788888888888888877653 4567778888888888888888888888887743 24566777888888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003020 715 SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIG 794 (856)
Q Consensus 715 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 794 (856)
...|++++|.+.++++.+..|.+...+..++.++...|++++|+..++++++..+. ++.++..++.++...|++++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHH
Confidence 88899999999998888888888888888999999999999999999999888776 78888899999999999999999
Q ss_pred HHHHHHHc
Q 003020 795 TFKDMVNA 802 (856)
Q Consensus 795 ~~~~~~~~ 802 (856)
.++++++.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99988773
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.42 E-value=1.7e-11 Score=120.93 Aligned_cols=202 Identities=13% Similarity=0.091 Sum_probs=138.7
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003020 597 SDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLI 676 (856)
Q Consensus 597 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 676 (856)
.|+..+......+...|++++|+..|+++++..++++...+..+..++...|++++|+..|++..+.. |.+...+..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 34566667777777777777777777777776543566666667777777888888888887777764 44556777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHH
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASPDV-------YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA--NEFTYAMMLIM 747 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 747 (856)
.++...|++++|+..|++..+... .+. ..|..+...+...|++++|++.++++.+..|. ++.+|..++.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 778888888888888877776432 223 34667777777888888888888888877777 67778888877
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 748 YKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFT 810 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 810 (856)
|...| ..+++++...+.. +...|... .....|.+++|+..+++.++. .|+...
T Consensus 163 ~~~~~-----~~~~~~a~~~~~~-~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l--~p~~~~ 215 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLASS-NKEKYASE--KAKADAAFKKAVDYLGEAVTL--SPNRTE 215 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTTT-CHHHHHHH--HHHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHH-----HHHHHHHHhcccC-CHHHHHHH--HHHHHHHHHHHHHHHHHHhhc--CCCCHH
Confidence 76544 3445555555544 44444333 234556678888888888874 565544
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=3.6e-13 Score=140.03 Aligned_cols=250 Identities=15% Similarity=0.152 Sum_probs=149.2
Q ss_pred CCCchhhHHHHHHHhhcCCHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----
Q 003020 492 DMSSEGYSANIDGYGERGHVLEAERAFICCQE--------GKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSH----- 558 (856)
Q Consensus 492 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 558 (856)
|....++..++..+...|++++|...|+++.. ..+....++..++..|...|++++|+..|++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 44556788899999999999999999999887 34556788999999999999999999999998763
Q ss_pred -CCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003020 559 -GAVP-DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVV 636 (856)
Q Consensus 559 -~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 636 (856)
+..| ...++..+...+...|++++|...++++.+.. +.......+....+
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKDHPDVAKQ 155 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcCCCChHHHHH
Confidence 1111 23344445555555555555555554443320 00000000112334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC
Q 003020 637 YGVLINAFADVGNVKQAQSYFDAMESA------G-LPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL-------EASP 702 (856)
Q Consensus 637 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p 702 (856)
+..+...+...|++++|..+++++.+. + .+....++..++.++...|++++|...|+++.+. ...+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 555555666666666666666655442 1 1112345666666666677777777766666542 1111
Q ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 703 D-------VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 703 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
. ...+..+...+...+.+.+|...++......|.+..++..++.+|...|++++|++.++++++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 1 112223333444566667777778877777677788899999999999999999999999987643
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=1.8e-11 Score=131.44 Aligned_cols=299 Identities=11% Similarity=0.036 Sum_probs=164.7
Q ss_pred HHhcCCHHHHHHHHHHHHHC--CCCCCH--HhHHHHHHH--HhcCCCHHHHH-----------HHHHHHHhCCCCCCHH-
Q 003020 331 YGKAGQLKEASETFAQMLRE--GIVPTT--VTFNTMIHI--YGNNDQLAEVD-----------SLIKKMEELHCPPDTR- 392 (856)
Q Consensus 331 ~~~~g~~~~A~~~~~~~~~~--g~~p~~--~~~~~ll~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~- 392 (856)
+.+.+++++|..+++++.+. .+..|. ..|..++.. ..-.++++.+. +.++.+... +.+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 34689999999999998664 232333 333333322 11223333333 555555432 11111
Q ss_pred -----HHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-C--
Q 003020 393 -----TYNILIFLHAKNDKISMASRYFWKMKEA----NLEP-DIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLE-I-- 459 (856)
Q Consensus 393 -----~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p-- 459 (856)
.+......+...|++++|+..|++..+. +-++ ...+|..+...|...|++++|+..+.+.++.-.. +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 1222445667778888888888877652 1111 2356777777778888888888877777542111 1
Q ss_pred ---CHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 003020 460 ---DEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMV 536 (856)
Q Consensus 460 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 536 (856)
...++..++.+|...|++++|...|+++....+...+ .+....++..++
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------~~~~~~~~~~lg 231 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ----------------------------PQLMGRTLYNIG 231 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC----------------------------hHHHHHHHHHHH
Confidence 1235556666666666666666666655422111000 001123555555
Q ss_pred HHHHccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC----CCCChHhHHHHHH
Q 003020 537 KAYGMGRNYDKACNLFDSMTSH----GA-VPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAG----LVSDCIPYCAVIS 607 (856)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~ 607 (856)
.+|...|++++|+..|++..+. +. +....++..+...+...|++++|...+++.++.. .+.....+..+..
T Consensus 232 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ 311 (383)
T 3ulq_A 232 LCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKS 311 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666666666665555441 11 2234455556666666666666666666554421 1111222455666
Q ss_pred HHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 608 SYMKLGQ---LEMAEEVYKDMIRFNVEPD-VVVYGVLINAFADVGNVKQAQSYFDAMES 662 (856)
Q Consensus 608 ~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (856)
.|...|+ +++|+.++++. +..|+ ...+..+...|...|++++|...|++..+
T Consensus 312 ~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 312 LYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6777777 66666666655 22222 33666777778888888888888877754
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=2.8e-11 Score=119.26 Aligned_cols=157 Identities=11% Similarity=-0.036 Sum_probs=130.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 632 PDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMI 711 (856)
Q Consensus 632 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 711 (856)
.|+..+......+...|++++|+..|++..+...+++...+..++.++...|++++|+..|++..+... .+...+..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 466788888889999999999999999998875337888888899999999999999999999988542 2456788889
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 003020 712 DLYSERSMVRQAEEIFEIMKKKGDANE-------FTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-DLLSYNNVLGLY 783 (856)
Q Consensus 712 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 783 (856)
.++...|++++|++.++++.+..|.++ .+|..++..+...|++++|++.++++++..|.. ++..|..++.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 999999999999999999999888888 568888999999999999999999999875420 247888888888
Q ss_pred HhcCCH
Q 003020 784 AVDGRF 789 (856)
Q Consensus 784 ~~~g~~ 789 (856)
...|+.
T Consensus 164 ~~~~~~ 169 (228)
T 4i17_A 164 YNNGAD 169 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776643
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=1.7e-10 Score=123.41 Aligned_cols=269 Identities=14% Similarity=0.035 Sum_probs=174.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----hHhHH
Q 003020 533 NVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKC----SYNSLIQILAGADLPHMAKRYLRKMQEAGLV-SD----CIPYC 603 (856)
Q Consensus 533 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~ 603 (856)
......+...|++++|...+++........+.. ++..+...+...|++++|...+++..+.... .+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445556666666666666665543222221 3445555666667777777766665542110 11 12245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHH
Q 003020 604 AVISSYMKLGQLEMAEEVYKDMIRF----NVE--P-DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLP----PNAVIY 672 (856)
Q Consensus 604 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~ 672 (856)
.+...+...|++++|...+++.++. +.. | ....+..+...+...|++++|...+++....... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6667778888888888888877653 111 2 2345666777888888888888888887653211 123567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHHHcCCHHHHHHHHHHHHhCCCCC----HHHHH
Q 003020 673 NSLIKLYTKVGYLKEAQETYKLLRSLEASP-D-VYTSN----CMIDLYSERSMVRQAEEIFEIMKKKGDAN----EFTYA 742 (856)
Q Consensus 673 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~ 742 (856)
..+...+...|++++|...+++.......+ . ..... ..+..+...|++++|...++++....+.+ ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 778888888899999999888876531111 1 11111 23344678899999999988887655332 33567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 743 MMLIMYKRNGRFEEATRIAKQMRESGLI----SDL-LSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 743 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
.++.++...|++++|...++++.+.... ++. ..+..++.++...|++++|...+++.++
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7888889999999999999888764221 122 3677788889999999999999988876
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=6.4e-11 Score=112.09 Aligned_cols=168 Identities=17% Similarity=0.080 Sum_probs=148.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 600 IPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLY 679 (856)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 679 (856)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 346677888889999999999999988764 3477889999999999999999999999998764 56788899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
...|++++|.+.++++.+... .+...+..++.++...|++++|.+.++++.+..|.++.++..++.++...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999888542 5677888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCC
Q 003020 760 IAKQMRESGLI 770 (856)
Q Consensus 760 ~~~~~~~~~~~ 770 (856)
.++++++..|.
T Consensus 166 ~~~~~~~~~~~ 176 (186)
T 3as5_A 166 HFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHcCCC
Confidence 99999987655
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=4.2e-11 Score=137.07 Aligned_cols=167 Identities=10% Similarity=0.083 Sum_probs=151.3
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIK 677 (856)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 677 (856)
+..+++.|...|.+.|++++|+..|+++++.. +-+..+|..+..+|.+.|++++|+..|++.++.+ +.+...|..++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45678999999999999999999999999875 3367899999999999999999999999998875 567889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 678 LYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 678 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 757 (856)
++...|++++|++.|+++++... .+...|..++.+|...|++++|++.|+++++..|.+..++..++.++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999999998542 35778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc
Q 003020 758 TRIAKQMRES 767 (856)
Q Consensus 758 ~~~~~~~~~~ 767 (856)
.+.++++++.
T Consensus 165 ~~~~~kal~l 174 (723)
T 4gyw_A 165 DERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=1.5e-10 Score=123.99 Aligned_cols=196 Identities=9% Similarity=0.052 Sum_probs=110.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 003020 602 YCAVISSYMKLGQLEMAEEVYKDMIRFNV-----EP-DVVVYGVLINAFADVGNVKQAQSYFDAMESA----GLPP-NAV 670 (856)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 670 (856)
+..+...|...|+++.|...++++++... .+ ...+++.+...|...|++++|...|++..+. +.++ ...
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44445555555555555555555443110 00 1235555666666666666666666655431 1111 124
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRS-----LEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG-----DANEFT 740 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~ 740 (856)
++..++.+|...|++++|+..|++..+ ... ....++..++.++...|++++|...++++.+.. +.....
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 566666667777777777777666655 221 224556666677777777777777777666543 222334
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 741 YAMMLIMYKRNGR---FEEATRIAKQMRESGLISD-LLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 741 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+..+...+...|+ +++|+..+++. +..|+ ...+..++..|...|++++|...|+++++
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555566666666 66666666552 21112 24556777777788888888777777765
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=4.7e-10 Score=120.04 Aligned_cols=165 Identities=11% Similarity=-0.108 Sum_probs=114.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CC---C-CHH
Q 003020 324 YNTLIDTYGKAGQLKEASETFAQMLREGI-VPT----TVTFNTMIHIYGNNDQLAEVDSLIKKMEELH--CP---P-DTR 392 (856)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~---~-~~~ 392 (856)
|-..+..+...|++++|+..|++..+... .++ ..++..+..+|...|+++.|...+.+..+.. .. + ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 44456667788999999999999876411 122 3477888888889999999998888877531 11 1 234
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCHh
Q 003020 393 TYNILIFLHAKNDKISMASRYFWKMKEA----NLE-PDIVSYRTLLYAYSIRRMVCEAEELISEMDG-----GGLEIDEY 462 (856)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~ 462 (856)
+++.+...|...|++++|.+.|++..+. +.+ ....++..+..+|...|++++|++.|++.++ .... ...
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHH
Confidence 6777888888888888888888877642 111 1234677777888888888888888888765 3222 255
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003020 463 TQSALTRMYIEAGMLEKSWLWFRRFHL 489 (856)
Q Consensus 463 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 489 (856)
++..++.++.+.|++++|...+++...
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666667777777777777777766654
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=1e-09 Score=117.24 Aligned_cols=167 Identities=12% Similarity=0.028 Sum_probs=87.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCC----ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH--
Q 003020 567 YNSLIQILAGADLPHMAKRYLRKMQEAGLVS----DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPD--VVVYG-- 638 (856)
Q Consensus 567 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~-- 638 (856)
+..+...+...|++++|...+++.++..... ...++..+...+...|++++|...+++.......++ .....
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 217 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 217 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 3344445555555555555555544332111 123455566666666666666666666654211111 11111
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHH
Q 003020 639 --VLINAFADVGNVKQAQSYFDAMESAGLPP---NAVIYNSLIKLYTKVGYLKEAQETYKLLRSL----EASPDV-YTSN 708 (856)
Q Consensus 639 --~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~ 708 (856)
..+..+...|++++|...+++.......+ ....+..+..++...|++++|...++.+... +..++. ..+.
T Consensus 218 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 297 (373)
T 1hz4_A 218 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 297 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 12233556677777777776665432111 1234556666777777777777777665441 211122 2455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKK 733 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~ 733 (856)
.+..++...|+.++|...++++...
T Consensus 298 ~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 298 LLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5666677777777777777776654
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=2.3e-11 Score=124.19 Aligned_cols=227 Identities=13% Similarity=0.100 Sum_probs=158.1
Q ss_pred HcCCChHHHHHHHHHHHHc-------CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHH
Q 003020 575 AGADLPHMAKRYLRKMQEA-------GLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRF------NV-EPDVVVYGVL 640 (856)
Q Consensus 575 ~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 640 (856)
...|++++|+..+++.++. ..+....++..+...|...|++++|+..|+++++. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777888777776652 22234556888888999999999999999998764 21 2234578888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHH
Q 003020 641 INAFADVGNVKQAQSYFDAMESA------G-LPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL------EASP-DVYT 706 (856)
Q Consensus 641 ~~~~~~~g~~~~A~~~~~~~~~~------~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~ 706 (856)
...|...|++++|...++++.+. . .+....++..++..+...|++++|+..|+++.+. +..| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88999999999999999988764 1 1234567888889999999999999999888764 1123 2457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC---------CCCCHHHHHHHHHHHHHcCCHHHHHH------HHHHHHHcCCCC
Q 003020 707 SNCMIDLYSERSMVRQAEEIFEIMKKK---------GDANEFTYAMMLIMYKRNGRFEEATR------IAKQMRESGLIS 771 (856)
Q Consensus 707 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~p 771 (856)
+..++.+|...|++++|...++++.+. .+.....|..+...+...+....+.. .++......+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT- 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH-
Confidence 778888999999999999999888764 23333455555555554443333322 22221111111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 772 DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 772 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
...++..++.+|...|++++|..+++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3467899999999999999999999998863
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.25 E-value=2.3e-10 Score=110.63 Aligned_cols=139 Identities=13% Similarity=0.046 Sum_probs=110.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 003020 673 NSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG 752 (856)
Q Consensus 673 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 752 (856)
..++.++...|++++|+..|++.++..+ .+...+..++.++...|++++|+..|+++++..|.++.+|..++.+|...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 3488899999999999999999988542 457788899999999999999999999999999999999999999987766
Q ss_pred C--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003020 753 R--FEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGA 816 (856)
Q Consensus 753 ~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 816 (856)
+ .+.+...++++.. +.|....+...+.++...|++++|+..|+++++ +.|+......+.+
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 4 4456666666542 333334667788889999999999999999988 5888765554444
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.23 E-value=5.1e-10 Score=112.78 Aligned_cols=172 Identities=13% Similarity=0.126 Sum_probs=104.3
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHH
Q 003020 599 CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPD---VVVYGVLINAFADVGNVKQAQSYFDAMESAGL--PPNAVIYN 673 (856)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~ 673 (856)
...+..+...+.+.|++++|+..|+++++..+. + ...+..+..++.+.|++++|+..|+++++... +.....+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344444445555555555555555555543211 2 33444455555555555555555555544311 01123344
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHH-----
Q 003020 674 SLIKLYTK--------VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFT----- 740 (856)
Q Consensus 674 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----- 740 (856)
.++.++.. .|++++|+..|+++++ ..|.+...
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-----------------------------------~~p~~~~~~~a~~ 138 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFID-----------------------------------RYPNHELVDDATQ 138 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH-----------------------------------HCTTCTTHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHH-----------------------------------HCcCchhHHHHHH
Confidence 44444444 5555555555555444 44333322
Q ss_pred ------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHH
Q 003020 741 ------------YAMMLIMYKRNGRFEEATRIAKQMRESGLIS--DLLSYNNVLGLYAVD----------GRFKDVIGTF 796 (856)
Q Consensus 741 ------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~ 796 (856)
+..++.+|...|++++|+..|+++++..|.. .+..+..++.+|... |++++|+..|
T Consensus 139 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 139 KIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 3678899999999999999999999987763 246788899999876 8999999999
Q ss_pred HHHHHcCCCCCH
Q 003020 797 KDMVNAAIQPDD 808 (856)
Q Consensus 797 ~~~~~~g~~p~~ 808 (856)
+++++. .|+.
T Consensus 219 ~~~~~~--~p~~ 228 (261)
T 3qky_A 219 ERLLQI--FPDS 228 (261)
T ss_dssp HHHHHH--CTTC
T ss_pred HHHHHH--CCCC
Confidence 999884 5654
No 88
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.22 E-value=8.3e-09 Score=113.33 Aligned_cols=344 Identities=10% Similarity=-0.056 Sum_probs=194.9
Q ss_pred CCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHhC-CCC-cChhhHHHHHHHHH----cCCC
Q 003020 172 SSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARK-WSYVQSLWDEMSVK-GIV-PINSTYGTLIDVCS----KGGL 244 (856)
Q Consensus 172 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~-~~~-p~~~~~~~l~~~~~----~~g~ 244 (856)
|+++.+..+|+.+... .|++..|...+....+.+. .+....+|+.++.. |.. ++...|...+..+. .+|+
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 4567788888877763 4688889888888877763 35567788877763 322 26677888887764 2467
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHh-------------cCChhHHHHHHHHHhhhccccCCcchhhhhhhhcc
Q 003020 245 KEEAVCWLERMNEGGMEPDEVTMGIVVQMYKK-------------AGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVEN 311 (856)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (856)
.+.+..+|++++...+..-...|......-.. .+.+..|+.+++..... +.
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~---------------~~- 168 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPL---------------IR- 168 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HH-
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHH---------------Hh-
Confidence 78889999999874221112233222221111 12333444444443210 00
Q ss_pred CCcCCCCcCHhHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 003020 312 GSHVNGSLSSYTYNTLIDTYGKAGQ-------LKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEE 384 (856)
Q Consensus 312 ~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 384 (856)
..+...|...+..-...+. .+.+..+|++++... +.+...|...+..+.+.|+.+.|..++++...
T Consensus 169 ------~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 169 ------GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp ------TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0133466666655433211 344667888887753 33566777777777788888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC----------C--CCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 385 LHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANL----------E--PDIVSYRTLLYAYSIRRMVCEAEELISEM 452 (856)
Q Consensus 385 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 452 (856)
. |.+...|... ....+.++. ++.+.+.-. . .....|...+....+.+..+.|..+|+++
T Consensus 242 ~--P~~~~l~~~y----~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 242 M--SDGMFLSLYY----GLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp H--CCSSHHHHHH----HHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C--CCcHHHHHHH----HhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6 4444433322 221112221 233222100 0 01234445555555666777777777777
Q ss_pred hcCCCCCCHhhHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHH
Q 003020 453 DGGGLEIDEYTQSALTRMYIEAG-MLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLV 531 (856)
Q Consensus 453 ~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 531 (856)
+. ...+...+...+..-...+ +.+.|..+|+......|..++.|...++.....|+.+.|..+|+++. .....
T Consensus 313 -~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~l 386 (493)
T 2uy1_A 313 -GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRM 386 (493)
T ss_dssp -TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHH
T ss_pred -hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHH
Confidence 22 1123334433333333333 57777777777776666666666666666666777777777777662 24666
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 003020 532 FNVMVKAYGMGRNYDKACNLFDSMT 556 (856)
Q Consensus 532 ~~~li~~~~~~g~~~~A~~~~~~m~ 556 (856)
|...+..-...|+.+.+..++++..
T Consensus 387 w~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 387 WDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666666667666666666654
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.21 E-value=3.1e-11 Score=109.75 Aligned_cols=143 Identities=9% Similarity=0.002 Sum_probs=101.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 003020 675 LIKLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGR 753 (856)
Q Consensus 675 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 753 (856)
|+..+...|++++|+..++..... .|+ ...+..+..+|...|++++|++.|+++++..|.++.+|..++.+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 445556667778888877776542 233 33455677778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCH-HHHHHHHHHHHHcC
Q 003020 754 FEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGT-FKDMVNAAIQPDD-FTFKSLGAVLMKCG 822 (856)
Q Consensus 754 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~g~~p~~-~~~~~l~~~~~~~G 822 (856)
+++|+..|+++++.+|. ++.+|..++.+|.+.|++++|.+. ++++++. .|+. ..|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 88888888888888777 778888888888888888776654 4777773 5554 44666666665555
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=3.4e-10 Score=116.06 Aligned_cols=166 Identities=13% Similarity=0.050 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC-CC----H
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESA----GLPP-NAVIYNSLIKLYTKV-GYLKEAQETYKLLRSLEAS-PD----V 704 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-p~----~ 704 (856)
+|+.+..+|...|++++|+..|++.++. |-.. -..++..++.+|... |++++|+..|++.++.... .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4444444444444444444444444321 1000 023556666666664 7777777776666552110 11 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----H
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEF-------TYAMMLIMYKRNGRFEEATRIAKQMRESGLISD----L 773 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~ 773 (856)
.++..++..+...|++++|++.++++.+..|.+.. .|..++.++...|++++|+..++++++..|... .
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 34666677777777777777777777766543321 456667777777777777777777776554311 1
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 003020 774 LSYNNVLGLYA--VDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 774 ~~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 801 (856)
..+..++.++. ..+++++|+..|++++.
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 12344455553 34567777777766543
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=1.1e-10 Score=118.96 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=120.8
Q ss_pred HHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------CC-CcChhhHHHHHHHHHcCCCHHHHH
Q 003020 177 ALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVK------GI-VPINSTYGTLIDVCSKGGLKEEAV 249 (856)
Q Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~p~~~~~~~l~~~~~~~g~~~~A~ 249 (856)
|++.++.+.... .+....++..+...+...|++++|+..|++++.. +- +....++..++.+|...|++++|+
T Consensus 27 al~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 27 ALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 666666655332 2344678999999999999999999999998864 22 224568999999999999999999
Q ss_pred HHHHHHHhC------CCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHh
Q 003020 250 CWLERMNEG------GMEP-DEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSY 322 (856)
Q Consensus 250 ~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (856)
..|+++++. ...| ...++..+...+...|++++|...|++.... .+....++.+....
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI---------------YATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---------------HHHHSCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHhcCCCCHHHHH
Confidence 999999875 1123 3568888999999999999999999987532 00111122333467
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003020 323 TYNTLIDTYGKAGQLKEASETFAQMLRE 350 (856)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 350 (856)
++..+...+...|++++|...|++..+.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999998763
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.19 E-value=6.5e-11 Score=107.55 Aligned_cols=146 Identities=10% Similarity=0.007 Sum_probs=120.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003020 640 LINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSM 719 (856)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 719 (856)
|...+...|++++|+..++...... +.+...+..+...|...|++++|++.|+++++..+ .+...|..++.+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCc
Confidence 3445556778889999888886642 33345667888999999999999999999988542 457788899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003020 720 VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRI-AKQMRESGLISDLLSYNNVLGLYAVDGR 788 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 788 (856)
+++|+..|+++.+..|.++.+|..++.+|.+.|++++|.+. ++++++..|. ++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999877665 5899999988 88999999888888875
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=2.1e-10 Score=117.69 Aligned_cols=196 Identities=9% Similarity=-0.035 Sum_probs=90.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc----CCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 003020 571 IQILAGADLPHMAKRYLRKMQEA----GLVSD-CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVE-PD----VVVYGVL 640 (856)
Q Consensus 571 l~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l 640 (856)
+..+...|++++|...|.+..+. +.+++ ..+|+.+..+|...|++++|+..|++.++.... .+ ..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44455555666555555554432 11111 234555555555555666665555555532110 01 2345555
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHH
Q 003020 641 INAFADV-GNVKQAQSYFDAMESAGLP-PN----AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDV------YTSN 708 (856)
Q Consensus 641 ~~~~~~~-g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~ 708 (856)
...|... |++++|+..|++..+.... .+ ..++..++..+...|++++|+..|+++.+....... ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5555553 5666666555555442100 00 234555555555556666666665555553221111 1344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHH
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKGDANEF-----TYAMMLIMYK--RNGRFEEATRIAKQMRE 766 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 766 (856)
.++.++...|++++|...+++..+..|.... .+..++.++. ..+++++|++.|+++..
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 4555555555666666665555554432221 2233333332 23445555555554443
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.18 E-value=1.1e-09 Score=97.09 Aligned_cols=130 Identities=16% Similarity=0.193 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR 750 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 750 (856)
.+..++..+...|++++|..+++++.+... .+...+..++..+...|++++|...++++....|.+...+..++..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 456677777888888888888888776432 3566677778888888888888888888888778888888888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 751 NGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 751 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
.|++++|++.++++.+..+. +...+..++.++...|++++|...++++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888888888766 6788888888888888888888888888774
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.16 E-value=3.1e-10 Score=106.44 Aligned_cols=162 Identities=12% Similarity=0.058 Sum_probs=122.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 003020 637 YGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDL-YS 715 (856)
Q Consensus 637 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 715 (856)
+......+...|++++|...|++..+.. |.+...+..++.++...|++++|+..|+++.+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3445566777788888888887776653 4566777777888888888888888887766533 343333222212 12
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 003020 716 ERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-DLLSYNNVLGLYAVDGRFKDVIG 794 (856)
Q Consensus 716 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 794 (856)
..+...+|+..++++.+..|.++..+..++.++...|++++|+..++++++..|.+ +...+..++.++...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 22233457889999999999999999999999999999999999999999998764 46789999999999999999999
Q ss_pred HHHHHHH
Q 003020 795 TFKDMVN 801 (856)
Q Consensus 795 ~~~~~~~ 801 (856)
.|++.+.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.16 E-value=1.2e-08 Score=103.25 Aligned_cols=229 Identities=9% Similarity=0.012 Sum_probs=172.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 003020 580 PHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLG--QLEMAEEVYKDMIRFNVEPDVVVYGVLINAF----ADV---GNV 650 (856)
Q Consensus 580 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 650 (856)
.++|+...+.++... +-+..+|+.-...+...| ++++++..++.++..+++ +..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 356666676666653 223444666666666677 888888888888876533 666666655555 444 678
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------HHH
Q 003020 651 KQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLK--EAQETYKLLRSLEASPDVYTSNCMIDLYSERSM------VRQ 722 (856)
Q Consensus 651 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 722 (856)
++++.+++++.+.. +-|..+|+.-.-++.+.|.++ ++++.++++++.++ -+...|+....++...+. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 88899998888765 668888888888888888888 88888888888653 456677776666666666 899
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 723 AEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEE-ATRIAKQMRESG---LISDLLSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 723 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
+++.+++++...|.|..+|+.+...+.+.|+..+ +..+.+++.+.+ +. ++..+..++.+|.+.|+.++|+++++.
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT-SSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999999999999999999999999999988444 556777777655 54 788999999999999999999999999
Q ss_pred HHHcCCCCCHH-HHHHH
Q 003020 799 MVNAAIQPDDF-TFKSL 814 (856)
Q Consensus 799 ~~~~g~~p~~~-~~~~l 814 (856)
+.+. +.|... .|...
T Consensus 284 l~~~-~Dpir~~yW~~~ 299 (306)
T 3dra_A 284 LKSK-YNPIRSNFWDYQ 299 (306)
T ss_dssp HHHT-TCGGGHHHHHHH
T ss_pred HHhc-cChHHHHHHHHH
Confidence 8763 455443 34433
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.16 E-value=2.4e-10 Score=131.79 Aligned_cols=174 Identities=9% Similarity=-0.062 Sum_probs=131.5
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003020 610 MKLGQLEMAEEVYKDMI--------RFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK 681 (856)
Q Consensus 610 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 681 (856)
...|++++|++.+++++ +.. +.+...+..+..++...|++++|+..|+++.+.+ +.+...|..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55677788888887777 432 3356677777788888888888888888887764 5567788888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003020 682 VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIA 761 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 761 (856)
.|++++|++.|+++.+... .+...+..+..++...|++++ ++.|+++.+..|.+..+|..++.++...|++++|++.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888877442 245667778888888888888 88888888888888888888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003020 762 KQMRESGLISDLLSYNNVLGLYAVDGR 788 (856)
Q Consensus 762 ~~~~~~~~~p~~~~~~~l~~~~~~~g~ 788 (856)
+++++.+|. +...+..++.++...|+
T Consensus 558 ~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 888887766 66778888888766555
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=2.1e-09 Score=108.22 Aligned_cols=211 Identities=10% Similarity=0.023 Sum_probs=156.7
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHH
Q 003020 562 PDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSD---CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVE-PD-VVV 636 (856)
Q Consensus 562 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~ 636 (856)
.+...+..+...+...|++++|+..|+++++.... + ...+..+..+|.+.|++++|+..|+++++..+. |. ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45677888899999999999999999999987522 3 567888999999999999999999999986432 22 457
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003020 637 YGVLINAFAD--------VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSN 708 (856)
Q Consensus 637 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 708 (856)
+..+..++.. .|++++|+..|+++++.. |.+......+.......+ .+ ...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~-------~~-----------~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRA-------KL-----------ARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHH-------HH-----------HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHH-------HH-----------HHHHH
Confidence 7788888888 999999999999998863 333333322211111000 00 11255
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCC--H
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKGDA---NEFTYAMMLIMYKRN----------GRFEEATRIAKQMRESGLISD--L 773 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~--~ 773 (856)
.++.+|...|++++|+..|+++.+..|. .+.++..++.+|... |++++|+..++++++..|... .
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 7788889999999999999999887765 456788888888866 889999999999999887622 2
Q ss_pred HHHHHHHHHHHhcCCHHHH
Q 003020 774 LSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 774 ~~~~~l~~~~~~~g~~~~A 792 (856)
.+...+..++...|+++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 4455566666666655543
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=4.9e-09 Score=104.75 Aligned_cols=177 Identities=11% Similarity=0.007 Sum_probs=85.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 618 AEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGL-PPNAVIYNSLIKLYTKVGYLKEAQETYKLLR 696 (856)
Q Consensus 618 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 696 (856)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554433 23444444555555555666666666655544431 1233455555555666666666666666555
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 697 SLEASP-----DVYTSNCMIDL--YSERS--MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 697 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
+. .| +..+...++.+ ....| ++++|..+|+++.+..| +...-..+..++.+.|++++|.+.++.+.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p-~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP-TWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC-SHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 52 23 12333333333 22222 55666666666544432 2111112222555566666666666554443
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 768 ----------GLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 768 ----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+|. ++.++.+++.+....|+ +|.++++++.+
T Consensus 241 ~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 241 YYSVEQKENAVLY-KPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred cccccccccCCCC-CHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 133 45555455544444554 55555655555
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.13 E-value=4.3e-09 Score=103.11 Aligned_cols=186 Identities=11% Similarity=-0.058 Sum_probs=121.3
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHH
Q 003020 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEP-D-VVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA---VIY 672 (856)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~ 672 (856)
+...+..+...+.+.|++++|+..|+++++..+.. . ...+..++.++.+.|++++|+..|+++.+.. |.+. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 34455666677778888888888888887653321 1 3466777778888888888888888887653 2222 245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH-----------
Q 003020 673 NSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTY----------- 741 (856)
Q Consensus 673 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------- 741 (856)
..++.++...|.. .++ .|..+...+...|++++|+..|+++.+..|.++.++
T Consensus 82 ~~~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence 5555555442210 000 011112222334555566666666655555544333
Q ss_pred ------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 742 ------AMMLIMYKRNGRFEEATRIAKQMRESGLISDL---LSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 742 ------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
..++..|...|++++|+..|+++++..|. ++ ..+..++.+|.+.|++++|++.++++...
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 45678889999999999999999999876 43 57899999999999999999999998875
No 101
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.13 E-value=1.5e-08 Score=101.21 Aligned_cols=223 Identities=13% Similarity=0.068 Sum_probs=157.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 003020 531 VFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYM 610 (856)
Q Consensus 531 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 610 (856)
...-+.++|...|+++.. ..-.|....+..+...+ ..+ ++..+++..+.+ .++..++..+..++.
T Consensus 47 ~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~ 111 (310)
T 3mv2_B 47 LLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQA 111 (310)
T ss_dssp HHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 333445666666666531 11233433444333333 222 677777776655 455666678888899
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHH--HHhc
Q 003020 611 KLGQLEMAEEVYKDMIRFNV-EPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPP-----NAVIYNSLIKL--YTKV 682 (856)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~--~~~~ 682 (856)
..|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...+..+ ....
T Consensus 112 ~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~ 189 (310)
T 3mv2_B 112 ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFAT 189 (310)
T ss_dssp HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHh
Confidence 99999999999999877654 235668888889999999999999999999875 45 35556666655 3333
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----------CCCCHHHHHHHHHHHHH
Q 003020 683 G--YLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKK----------GDANEFTYAMMLIMYKR 750 (856)
Q Consensus 683 g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~ 750 (856)
| ++.+|..+|+++.+.. |+..+...++.++...|++++|.+.++.+.+. .|.|+.++..++.....
T Consensus 190 g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~ 267 (310)
T 3mv2_B 190 NKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM 267 (310)
T ss_dssp TCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH
Confidence 4 8999999999987633 55333334445888999999999999977664 37788888788877777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 751 NGRFEEATRIAKQMRESGLISDLLS 775 (856)
Q Consensus 751 ~g~~~~A~~~~~~~~~~~~~p~~~~ 775 (856)
.|+ +|.++++++.+..|. ++.+
T Consensus 268 lgk--~a~~l~~qL~~~~P~-hp~i 289 (310)
T 3mv2_B 268 QGL--DTEDLTNQLVKLDHE-HAFI 289 (310)
T ss_dssp TTC--TTHHHHHHHHHTTCC-CHHH
T ss_pred hCh--HHHHHHHHHHHhCCC-ChHH
Confidence 887 889999999999877 6544
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.12 E-value=1.1e-09 Score=111.80 Aligned_cols=168 Identities=10% Similarity=0.007 Sum_probs=143.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-H
Q 003020 631 EPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSN-C 709 (856)
Q Consensus 631 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~ 709 (856)
+.+...+..+...+...|++++|...|+++.... |.+...+..++.++...|++++|...++++... .|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4455677788888999999999999999998875 667889999999999999999999999988764 35544333 3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-DLLSYNNVLGLYAVDGR 788 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 788 (856)
....+...++.++|++.++++....|.+...+..++.++...|++++|+..++++++..|.. +...+..++.+|...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 33346677888899999999999999999999999999999999999999999999998872 26889999999999999
Q ss_pred HHHHHHHHHHHHH
Q 003020 789 FKDVIGTFKDMVN 801 (856)
Q Consensus 789 ~~~A~~~~~~~~~ 801 (856)
.++|...|++.+.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999998765
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.12 E-value=4.6e-09 Score=101.68 Aligned_cols=176 Identities=8% Similarity=0.029 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 003020 617 MAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVG----YLKEAQETY 692 (856)
Q Consensus 617 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 692 (856)
+|.+.|++..+.| +..++..+...|...+++++|+.+|++..+.| ++..+..+...|.. + ++++|+++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777643 66777777777777888888888888887765 56677777777776 6 788888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 003020 693 KLLRSLEASPDVYTSNCMIDLYSE----RSMVRQAEEIFEIMKKKGDA--NEFTYAMMLIMYKR----NGRFEEATRIAK 762 (856)
Q Consensus 693 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~~ 762 (856)
++..+.+ +...+..|...|.. .+++++|++.|+++.+.++. ++.++..|+..|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887643 45566677777766 77888888888888877653 37788888888888 788899999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCC
Q 003020 763 QMRESGLISDLLSYNNVLGLYAVD-G-----RFKDVIGTFKDMVNAAI 804 (856)
Q Consensus 763 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g~ 804 (856)
++.+.+ .++.++..|+.+|... | ++++|+.+|++..+.|.
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888872 2556788888888754 3 78899999998888763
No 104
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=4.4e-09 Score=93.08 Aligned_cols=133 Identities=19% Similarity=0.198 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYS 715 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 715 (856)
.|..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|...++++.+... .+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 45667777777888888888888877654 45667777788888888888888888888777442 45667777888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 716 ERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 716 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
..|++++|...++++.+..|.+..++..++.++...|++++|...++++++..|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888888888888888888899999999999999999988887653
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.09 E-value=6.4e-10 Score=128.27 Aligned_cols=172 Identities=7% Similarity=-0.083 Sum_probs=151.8
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003020 645 ADVGNVKQAQSYFDAME--------SAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE 716 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 716 (856)
...|++++|++.+++.. +.. +.+...+..++.++...|++++|++.|+++.+... .+...|..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 67899999999999998 543 56678899999999999999999999999998542 467788899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003020 717 RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTF 796 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 796 (856)
.|++++|++.|+++.+..|.+...|..++.++...|++++ ++.|+++++.+|. +...|..++.+|.+.|++++|+..|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999 9999999999988 8899999999999999999999999
Q ss_pred HHHHHcCCCCCHH-HHHHHHHHHHHcC
Q 003020 797 KDMVNAAIQPDDF-TFKSLGAVLMKCG 822 (856)
Q Consensus 797 ~~~~~~g~~p~~~-~~~~l~~~~~~~G 822 (856)
+++++ +.|+.. .+..+..++...|
T Consensus 558 ~~al~--l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 558 DEVPP--TSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HTSCT--TSTTHHHHHHHHHHHTC---
T ss_pred Hhhcc--cCcccHHHHHHHHHHHHccC
Confidence 99887 478754 4777777775544
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.08 E-value=1.1e-09 Score=98.70 Aligned_cols=106 Identities=11% Similarity=0.010 Sum_probs=95.9
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 701 SPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNV 779 (856)
Q Consensus 701 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 779 (856)
.|+ ...+..++..+.+.|++++|+..|+++....|.++..|..++.+|...|++++|+..|+++++..|. ++..|..+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~l 110 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHT 110 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHH
Confidence 343 4467788889999999999999999999999999999999999999999999999999999999988 88999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 780 LGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 780 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
+.+|...|++++|+..|+++++. .||..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 99999999999999999999984 57765
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.06 E-value=2.7e-09 Score=93.29 Aligned_cols=108 Identities=9% Similarity=0.052 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYA 784 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 784 (856)
..+...+..|.+.|++++|++.|+++++..|.++.+|..++.+|...|++++|+..++++++.+|. ++..|..++.+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 356677778888888888888888888888888888888888888888888888888888888776 7788888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHH
Q 003020 785 VDGRFKDVIGTFKDMVNAAIQPDDFT-FKSLG 815 (856)
Q Consensus 785 ~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~ 815 (856)
..|++++|++.|++.++. .|+... +..|.
T Consensus 93 ~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~ 122 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV--DPSNEEAREGVR 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH--CcCCHHHHHHHH
Confidence 888888888888888873 565443 44443
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.05 E-value=4e-09 Score=119.60 Aligned_cols=165 Identities=9% Similarity=0.017 Sum_probs=122.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 612 LGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQET 691 (856)
Q Consensus 612 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 691 (856)
.|++++|+..|+++++.. +.+...|..+...+...|++++|...|++..+.. +.+...+..++.+|...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999888764 3367788888889999999999999999998874 56778888899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcC
Q 003020 692 YKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN---GRFEEATRIAKQMRESG 768 (856)
Q Consensus 692 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 768 (856)
|++..+... .+...+..+..++...|++++|.+.++++.+..|.+..++..++.++... |++++|.+.++++++.+
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 998888542 45678888888999999999999999999988888888999999999999 99999999999999988
Q ss_pred CCCCHHHHHHHH
Q 003020 769 LISDLLSYNNVL 780 (856)
Q Consensus 769 ~~p~~~~~~~l~ 780 (856)
+. +...|..++
T Consensus 159 p~-~~~~~~~l~ 169 (568)
T 2vsy_A 159 VG-AVEPFAFLS 169 (568)
T ss_dssp CC-CSCHHHHTT
T ss_pred Cc-ccChHHHhC
Confidence 76 555555554
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=3.3e-08 Score=95.60 Aligned_cols=177 Identities=14% Similarity=0.058 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 003020 582 MAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVG----NVKQAQSYF 657 (856)
Q Consensus 582 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 657 (856)
+|.+.|++..+.| ++..+..+...|...+++++|+..|++..+.+ +...+..+...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666777777764 67788888888888999999999999998864 67777888888777 6 899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 003020 658 DAMESAGLPPNAVIYNSLIKLYTK----VGYLKEAQETYKLLRSLEAS-PDVYTSNCMIDLYSE----RSMVRQAEEIFE 728 (856)
Q Consensus 658 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 728 (856)
++..+.| +...+..+...|.. .+++++|+++|++..+.+.. .....+..|...|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998765 67788888888877 78999999999998875521 026677788888888 889999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHcCC
Q 003020 729 IMKKKGDANEFTYAMMLIMYKRN-G-----RFEEATRIAKQMRESGL 769 (856)
Q Consensus 729 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 769 (856)
+..+. +.++.++..|+.+|... | ++++|+..|+++.+.|.
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99887 55667888899988764 3 89999999999999874
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.04 E-value=3.4e-07 Score=100.43 Aligned_cols=378 Identities=9% Similarity=-0.046 Sum_probs=212.6
Q ss_pred cCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-HHHH
Q 003020 368 NND-QLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRM-VCEA 445 (856)
Q Consensus 368 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~A 445 (856)
+.| +++.|+.+|+.+.+. -|. |+++.+..+|++.+.. .|++..|...+.-..+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 377888888887754 232 8888888888888874 3688888877776666553 3456
Q ss_pred HHHHHHHhcC-CCCC-CHhhHHHHHHHHH----HcCChHHHHHHHHHHHhcCCCCch-hhHHHHHHHhhcCCHHHHHHHH
Q 003020 446 EELISEMDGG-GLEI-DEYTQSALTRMYI----EAGMLEKSWLWFRRFHLAGDMSSE-GYSANIDGYGERGHVLEAERAF 518 (856)
Q Consensus 446 ~~~~~~~~~~-~~~p-~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 518 (856)
..+|+..+.. |..| +...+...+..+. ..++.+.+..+|+++........+ .|......-. ......+..+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHH
Confidence 6677766543 3322 4455555554432 234566677777777653221111 1111111111 11111122111
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC--CC-----hHHHHHHHHHHH
Q 003020 519 ICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGA--DL-----PHMAKRYLRKMQ 591 (856)
Q Consensus 519 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~-----~~~A~~~~~~~~ 591 (856)
... .+.+..|..+++.+...-...+...|...+.--... +- .+.+..+|++++
T Consensus 147 ~~~--------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al 206 (493)
T 2uy1_A 147 GDT--------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYIL 206 (493)
T ss_dssp HHH--------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHH--------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHH
Confidence 111 112333444444433210001233444444432221 11 234566777777
Q ss_pred HcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------
Q 003020 592 EAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESA-------- 663 (856)
Q Consensus 592 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------- 663 (856)
... +.+...|...+..+.+.|+.++|..+|++++.. +.+...|.. |......++. ++.+.+.
T Consensus 207 ~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 207 DSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAES 276 (493)
T ss_dssp HHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC------
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccch
Confidence 653 445677777777778888888888888888876 334333332 2221111121 2222211
Q ss_pred -CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCH
Q 003020 664 -GL---PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE-RSMVRQAEEIFEIMKKKGDANE 738 (856)
Q Consensus 664 -~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~ 738 (856)
+. ......|...+....+.+..+.|..+|+++ +.. ..+...|...+..-.. .++.+.|..+|+...+..|.++
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~ 354 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST 354 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH
Confidence 00 011245666667766778889999999888 322 2344444332222222 3468899999998888777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
..|...+......|+.+.|..+|+++. . ....|...+..-...|+.+.+..+++++.+
T Consensus 355 ~~~~~yid~e~~~~~~~~aR~l~er~~----k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 355 LLKEEFFLFLLRIGDEENARALFKRLE----K-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSC----C-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----H-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777788899999999888872 2 567788888777788998888888888775
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.03 E-value=1.3e-07 Score=95.80 Aligned_cols=229 Identities=8% Similarity=0.001 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHcCCCCChHhHHHHHHHH----Hhc---CCH
Q 003020 546 DKACNLFDSMTSHGAVP-DKCSYNSLIQILAGAD--LPHMAKRYLRKMQEAGLVSDCIPYCAVISSY----MKL---GQL 615 (856)
Q Consensus 546 ~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 615 (856)
++|+.+++.++.. .| +...|+.-..++...+ .+++++..++.++... +-+..+|+.-...+ ... +++
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3444444444443 12 2233444444444444 4555555555544432 12233333333333 333 677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHH
Q 003020 616 EMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVK--QAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGY------LKE 687 (856)
Q Consensus 616 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 687 (856)
++++..++++++.. +.+..+|+.-.-.+.+.|.++ ++++.++++++.+ +-|...|+....++...|. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 88888888888765 347888888777777888877 8888888888775 5677888887777777776 888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003020 688 AQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQ-AEEIFEIMKKKG---DANEFTYAMMLIMYKRNGRFEEATRIAKQ 763 (856)
Q Consensus 688 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 763 (856)
+++.++.++...+ -|...|+.+...+.+.|+..+ +.++.+++.+.+ +.++.++..++.+|.+.|+.++|+++++.
T Consensus 205 El~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 8888888887543 567778888888887777444 556777766554 77888999999999999999999999999
Q ss_pred HHH-cCCCCCHHHHHHHHH
Q 003020 764 MRE-SGLISDLLSYNNVLG 781 (856)
Q Consensus 764 ~~~-~~~~p~~~~~~~l~~ 781 (856)
+.+ .+|. ....|+..+.
T Consensus 284 l~~~~Dpi-r~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSKYNPI-RSNFWDYQIS 301 (306)
T ss_dssp HHHTTCGG-GHHHHHHHHH
T ss_pred HHhccChH-HHHHHHHHHh
Confidence 887 5665 5566665543
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.01 E-value=8.6e-09 Score=90.07 Aligned_cols=111 Identities=9% Similarity=-0.058 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYK 749 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 749 (856)
..+...+..|.+.|++++|++.|+++++..+ .+...|..++.+|...|++++|++.++++++..|.++.+|..++.++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 5677888999999999999999999888542 467788889999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003020 750 RNGRFEEATRIAKQMRESGLISDLLSYNNVLGL 782 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 782 (856)
..|++++|++.|+++++..|. +...+..+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPS-NEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHHh
Confidence 999999999999999999988 88888777664
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=3e-08 Score=97.01 Aligned_cols=189 Identities=15% Similarity=0.043 Sum_probs=132.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 003020 563 DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSD--CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDV--VVYG 638 (856)
Q Consensus 563 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 638 (856)
+...+..+...+...|++++|+..|+++++...... ...+..+..+|.+.|++++|+..|+++++..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 455667778889999999999999999998653221 356888899999999999999999999986543221 2455
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003020 639 VLINAFAD------------------VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA 700 (856)
Q Consensus 639 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 700 (856)
.+..++.. .|++++|+..|+++++.. |-+...+....... .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH----
Confidence 55555554 345555666665555542 22222221111000 0000000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 701 SPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANE---FTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 701 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.....++..|...|++++|+..|+++.+..|.++ .++..++.+|.+.|++++|++.++++...+|.
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 0113566788899999999999999999888776 57889999999999999999999999988765
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.98 E-value=9.4e-09 Score=116.51 Aligned_cols=165 Identities=11% Similarity=0.060 Sum_probs=108.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 577 ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
.|++++|...++++++.. +.+...+..+...|...|++++|...|++.++.. +.+...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467777888887777653 3356677777788888888888888888887764 33567777788888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhC
Q 003020 657 FDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSER---SMVRQAEEIFEIMKKK 733 (856)
Q Consensus 657 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 733 (856)
+++..+.. +.+...+..++.++...|++++|++.|+++.+... .+...+..+..++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88877764 55667777888888888888888888887777432 3456677777777777 8888888888888877
Q ss_pred CCCCHHHHHHHH
Q 003020 734 GDANEFTYAMML 745 (856)
Q Consensus 734 ~~~~~~~~~~l~ 745 (856)
+|.+...+..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 776665555444
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.98 E-value=2.3e-08 Score=96.94 Aligned_cols=125 Identities=13% Similarity=0.071 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 003020 672 YNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN 751 (856)
Q Consensus 672 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 751 (856)
+..++..+...|++++|+..|+++. .|+...+..++.++...|++++|++.++++.+..|.+..++..++.+|...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 3445555666666666666666542 345566666666666666777777766666666666666666677777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 752 GRFEEATRIAKQMRESGLISDL----------------LSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 752 g~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
|++++|++.++++++..+. +. ..+..++.+|...|++++|...|+++++
T Consensus 85 ~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777777776665544 22 5666677777777777777777777666
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.97 E-value=3.9e-09 Score=109.02 Aligned_cols=158 Identities=13% Similarity=0.103 Sum_probs=76.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 003020 607 SSYMKLGQLEMAEEVYKDMIRFNV----EP-DVVVYGVLINAFADVGNVKQAQSYFDAMESA----GLPP-NAVIYNSLI 676 (856)
Q Consensus 607 ~~~~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~ 676 (856)
..|...|++++|...|.++.+... .+ -..+|+.+...|...|++++|+..|++.++. |-+. ...++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666666666666553210 00 1235555555566666666666666555432 1000 123455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--C----HHHHHHHH
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASP-D----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA--N----EFTYAMML 745 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~----~~~~~~l~ 745 (856)
.+|.. |++++|+..|++..+..... + ..++..+..+|...|++++|++.++++.+..+. + ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 55555 55555555555554411000 0 234445555555555555555555555443211 1 12344444
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 003020 746 IMYKRNGRFEEATRIAKQMR 765 (856)
Q Consensus 746 ~~~~~~g~~~~A~~~~~~~~ 765 (856)
.++...|++++|+..+++++
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 45555555555555555555
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.95 E-value=6.9e-09 Score=107.12 Aligned_cols=157 Identities=10% Similarity=0.045 Sum_probs=69.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCC--HHHHHHHHH
Q 003020 643 AFADVGNVKQAQSYFDAMESA----GLPP-NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLE--A-SPD--VYTSNCMID 712 (856)
Q Consensus 643 ~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~--~~~~~~l~~ 712 (856)
.|...|++++|...|.+..+. +-++ -..+|+.++.+|...|++++|+..|++.++.. . .+. ..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555444321 1000 02344455555555555555555555443310 0 011 224444445
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHH
Q 003020 713 LYSERSMVRQAEEIFEIMKKKGDAN------EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-D----LLSYNNVLG 781 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~ 781 (856)
+|.. |++++|++.++++....+.. ..++..++.+|...|++++|+..++++++..+.. + ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 5544 55555555555544432111 2344455555555555555555555555432110 0 123444444
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 003020 782 LYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 782 ~~~~~g~~~~A~~~~~~~~ 800 (856)
++...|++++|+..|++.+
T Consensus 204 ~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 5555555555555555544
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=1.6e-08 Score=103.11 Aligned_cols=167 Identities=6% Similarity=-0.084 Sum_probs=134.8
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHH
Q 003020 596 VSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVI-YNS 674 (856)
Q Consensus 596 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ 674 (856)
+.+...+..+...+...|++++|...|+++++.. +.+...+..+...+...|++++|...++++.... |+... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3445567777888888999999999999998865 3367788889999999999999999999887653 44433 333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHcC
Q 003020 675 LIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN--EFTYAMMLIMYKRNG 752 (856)
Q Consensus 675 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 752 (856)
....+...++.++|+..|++..+..+ .+...+..+..++...|++++|++.++++.+..|.+ ..++..++.++...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 33346677888889999988887542 457778889999999999999999999999988776 788999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 003020 753 RFEEATRIAKQMRE 766 (856)
Q Consensus 753 ~~~~A~~~~~~~~~ 766 (856)
+.++|...|++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999988764
No 119
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=1.6e-08 Score=97.53 Aligned_cols=57 Identities=7% Similarity=-0.039 Sum_probs=26.7
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 003020 501 NIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTS 557 (856)
Q Consensus 501 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 557 (856)
++..|...|++++|+..|+++.+..|.++.+|..++.++...|++++|+..|++.++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.93 E-value=3.4e-09 Score=95.80 Aligned_cols=109 Identities=7% Similarity=-0.040 Sum_probs=91.4
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 691 TYKLLRSLEASP-DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 691 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
.|+++.+ ..| +...+..++..+...|++++|+..|+++....|.++..|..++.+|...|++++|+..|+++++..|
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3444444 234 3446677788888999999999999999988899999999999999999999999999999999888
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 770 ISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 770 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
. ++..+..++.+|...|++++|+..|++.++.
T Consensus 87 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 X-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp T-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7 8888999999999999999999999998873
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.92 E-value=1.9e-07 Score=95.57 Aligned_cols=166 Identities=11% Similarity=-0.025 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--
Q 003020 635 VVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA------VIYNSLIKLYTKVGYLKEAQETYKLLRSLEA---SPD-- 703 (856)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-- 703 (856)
..+...+..+...|++++|.+.+++..+.. +... ..+..++..+...|++++|+..|++..+... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 344556677788888999988888887653 2222 2244566677888899999999998876321 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKK---KGDANE----FTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS----- 771 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----- 771 (856)
..+++.++..|...|++++|+..++++.+ ..+.+. .++..++.+|...|++++|+..++++++.....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 44788899999999999999999998873 334432 588999999999999999999999998753211
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 003020 772 DLLSYNNVLGLYAVDGRFKDV-IGTFKDMVN 801 (856)
Q Consensus 772 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 801 (856)
-..+|..++.+|...|++++| ...+++++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 157899999999999999999 787888776
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.92 E-value=1.3e-07 Score=96.92 Aligned_cols=162 Identities=12% Similarity=0.009 Sum_probs=124.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHH
Q 003020 640 LINAFADVGNVKQAQSYFDAMESAGL-PPNA----VIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-SPD----VYTSNC 709 (856)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~ 709 (856)
.+..+...|++++|..++++..+... .|+. ..+..++..+...|++++|+..|+++.+... .++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45667888999999999998876421 1221 1334567777788899999999999887322 223 336888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CC-HHHHH
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKG-------DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI----SD-LLSYN 777 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~-~~~~~ 777 (856)
++.+|...|++++|+..++++.+.. +....++..++.+|...|++++|+..++++++..+. +. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999888421 223347889999999999999999999999875322 12 57899
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 003020 778 NVLGLYAVDGR-FKDVIGTFKDMVN 801 (856)
Q Consensus 778 ~l~~~~~~~g~-~~~A~~~~~~~~~ 801 (856)
.++.+|...|+ +++|+..+++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999999876
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.92 E-value=4.2e-08 Score=90.56 Aligned_cols=130 Identities=12% Similarity=-0.068 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYK 749 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 749 (856)
..+..++..+...|++++|...|++..+... .+...+..++.++...|++++|.+.++++.+..|.++.++..++.++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4567777888888999999999988877432 357778888888999999999999999999888889999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHH
Q 003020 750 RNGRFEEATRIAKQMRESGLISDLLSYNNVLG--LYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~ 801 (856)
..|++++|++.++++++..|. +...+..+.. .+...|++++|+..+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999998877 6666644444 47888999999999887654
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.89 E-value=7e-07 Score=91.16 Aligned_cols=226 Identities=11% Similarity=0.029 Sum_probs=162.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-CHHHHHH
Q 003020 579 LPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLG-QLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADV-G-NVKQAQS 655 (856)
Q Consensus 579 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~ 655 (856)
..++|+++++.++... +-+..+|+.-...+...| .+++++..++.++..++ .+..+|+.-...+.+. + +++++++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3456666666666653 224445666666666667 48888888888887763 3777888777777666 6 7888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-------H
Q 003020 656 YFDAMESAGLPPNAVIYNSLIKLYTKVGYLK--------EAQETYKLLRSLEASPDVYTSNCMIDLYSERSM-------V 720 (856)
Q Consensus 656 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~ 720 (856)
+++++.+.. +-|..+|+...-++.+.|.++ ++++.++++++..+ -+...|+....++...+. +
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHH
Confidence 888888765 667788887777777666666 88888888888553 466778777777777765 7
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHcC-----CCCCHHH
Q 003020 721 RQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRF--------------------EEATRIAKQMRESG-----LISDLLS 775 (856)
Q Consensus 721 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~p~~~~ 775 (856)
+++++.+++++...|.|..+|+.+...+.+.|+. ........++.... ..+++..
T Consensus 225 ~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 225 QDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 8999999999999999999999998888887764 23333333333222 0247788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 776 YNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 776 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
+..++.+|...|+.++|.++++.+.+. ..|-..
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~ 337 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRA 337 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHH
Confidence 999999999999999999999998753 455443
No 125
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=1.4e-08 Score=94.98 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=42.3
Q ss_pred chhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 003020 495 SEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSH 558 (856)
Q Consensus 495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 558 (856)
.+.+...+..+...|++++|+..|+++....|.+...+..+..++...|++++|+..|++....
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 3445555666666666666766666666666666777777777777777777777777766543
No 126
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.89 E-value=2.6e-08 Score=87.15 Aligned_cols=108 Identities=10% Similarity=0.085 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHHHH
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISD------LLSYNN 778 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~ 778 (856)
..+..++..+.+.|++++|++.|+++++..|.++.+|..++.+|...|++++|++.++++++..|... ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999998765421 247888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 779 VLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSL 814 (856)
Q Consensus 779 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 814 (856)
++.++...|++++|++.|++.++. .||+.+...|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 999999999999999999999884 6777665554
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.88 E-value=1.6e-08 Score=94.70 Aligned_cols=121 Identities=5% Similarity=0.018 Sum_probs=90.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHHcCCH--HH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM-YKRNGRF--EE 756 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 756 (856)
...|++++|+..++...+... .+...+..++.+|...|++++|+..++++.+..|.++..+..++.+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345777777777777766432 4566777777888888888888888888887777788888888888 7778887 88
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 757 ATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 757 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
|+..++++++..|. ++..+..++.+|...|++++|+..|+++++.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888888776 7778888888888888888888888888774
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.86 E-value=4.9e-08 Score=101.91 Aligned_cols=131 Identities=14% Similarity=-0.055 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD--------------VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD 735 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 735 (856)
..+..++..+.+.|++++|+..|+++++...... ...|..+..+|...|++++|+..++++++..|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444555555555555555555555554321111 46788899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 003020 736 ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDV-IGTFKDMVN 801 (856)
Q Consensus 736 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 801 (856)
.+..+|..++.+|...|++++|+..|+++++..|. +..++..++.++...|++++| ..+|++|..
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887 888999999999999999998 557777765
No 129
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.86 E-value=4.8e-08 Score=85.41 Aligned_cols=98 Identities=12% Similarity=0.019 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
...+..++..+...|++++|+..|+++.+..|.++.+|..++.++...|++++|+..++++++.+|. ++..|..++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 3456677788888899999999999988888888889999999999999999999999999998887 788889999999
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 003020 784 AVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 784 ~~~g~~~~A~~~~~~~~~~ 802 (856)
...|++++|+..|+++++.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999988874
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.84 E-value=1.3e-07 Score=82.15 Aligned_cols=113 Identities=15% Similarity=0.194 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYA 784 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 784 (856)
..+..++..+...|++++|.+.++++.+..|.+..++..++.++...|++++|+..++++.+..+. ++.++..++.+|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 345555555666666666666666666555555666666666666666666666666666665554 5556666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH
Q 003020 785 VDGRFKDVIGTFKDMVNAAIQPD-DFTFKSLGAVLMK 820 (856)
Q Consensus 785 ~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~ 820 (856)
..|++++|...++++++. .|+ ...+..+...+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHh
Confidence 666666666666666553 232 3334444444433
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.84 E-value=5.2e-08 Score=85.51 Aligned_cols=119 Identities=15% Similarity=-0.078 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
...+..++..+...|++++|+..|+++.+... .+...+..++.++...|++++|.+.++++.+..|.++.++..++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34455555556666666666666665555321 23445555566666666666666666666665566666666666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003020 749 KRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRF 789 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 789 (856)
...|++++|++.++++++..|. +...+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 6666666666666666666554 555666666666655553
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.83 E-value=1.5e-07 Score=81.73 Aligned_cols=117 Identities=18% Similarity=0.150 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
...+..++..+...|++++|.+.|+++.+... .+...+..++..+...|++++|...++++.+..|.+..++..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 46677788888888888888888888877432 45667778888888888999999999888888888888888899999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003020 749 KRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDG 787 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 787 (856)
...|++++|...++++++..|. ++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcc
Confidence 9999999999999999888876 7788888887776654
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.83 E-value=4.2e-07 Score=93.00 Aligned_cols=164 Identities=10% Similarity=-0.019 Sum_probs=126.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 003020 604 AVISSYMKLGQLEMAEEVYKDMIRFNV-EPDV----VVYGVLINAFADVGNVKQAQSYFDAMESAGLP-PN----AVIYN 673 (856)
Q Consensus 604 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~ 673 (856)
..+..+...|++++|...+++..+... .|+. ..+..+...+...|++++|+..|+++.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999987432 1221 13334666677788999999999999874222 22 34789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCHHHH
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRS----L-EASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKG------DANEFTY 741 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~ 741 (856)
.++.+|...|++++|+..|+++.+ . +..+. ..++..++.+|...|++++|++.++++.+.. ..-..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999998874 1 11122 3378889999999999999999999887654 1226789
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHc
Q 003020 742 AMMLIMYKRNGR-FEEATRIAKQMRES 767 (856)
Q Consensus 742 ~~l~~~~~~~g~-~~~A~~~~~~~~~~ 767 (856)
..++.+|...|+ +++|++.++++++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999995 69999999998763
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.82 E-value=6.7e-08 Score=85.19 Aligned_cols=116 Identities=8% Similarity=-0.081 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYK 749 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 749 (856)
..+..++..+...|++++|+..|+++.+... .+...+..++.++...|++++|+..++++.+..|.+..++..++.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4444444445555555555555554444221 233444444444555555555555555555444445555555555555
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003020 750 RNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDG 787 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 787 (856)
..|++++|++.++++++..|. +...+..++.++...|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 555555555555555554443 3344444444444433
No 135
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.82 E-value=1.9e-07 Score=90.38 Aligned_cols=129 Identities=15% Similarity=0.031 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003020 637 YGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE 716 (856)
Q Consensus 637 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 716 (856)
+..+...+...|++++|+..|++.. .|+...+..++.++...|++++|+..|+++.+.. +.+...+..++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4445566667777777777777653 4566777777777777777777777777777643 2345667777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 717 RSMVRQAEEIFEIMKKKGDANE----------------FTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.|++++|++.++++.+..|.+. .++..++.+|...|++++|++.++++++..|.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 8888888888887777665554 78888888888899999999999988888765
No 136
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.80 E-value=4e-08 Score=88.07 Aligned_cols=98 Identities=8% Similarity=-0.090 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
...+..+...+...|++++|+..|+++....|.++..|..++.+|...|++++|+..|+++++.+|. ++..+..++.+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 3455667778888899999999999998888889999999999999999999999999999998887 788888899999
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 003020 784 AVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 784 ~~~g~~~~A~~~~~~~~~~ 802 (856)
...|++++|+..|+++++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988873
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.79 E-value=9.2e-08 Score=84.30 Aligned_cols=118 Identities=8% Similarity=0.009 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003020 702 PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLG 781 (856)
Q Consensus 702 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 781 (856)
.+...+..++..+...|++++|.+.++++.+..|.+..++..++.++...|++++|++.++++++..+. ++..+..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 346678889999999999999999999999999999999999999999999999999999999999887 8899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcC
Q 003020 782 LYAVDGRFKDVIGTFKDMVNAAIQPDD-FTFKSLGAVLMKCG 822 (856)
Q Consensus 782 ~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~G 822 (856)
+|...|++++|+..++++++. .|+. ..+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 999999999999999999885 4543 45666666665544
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.78 E-value=2e-07 Score=81.67 Aligned_cols=117 Identities=9% Similarity=0.047 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003020 703 DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGL 782 (856)
Q Consensus 703 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 782 (856)
+...+..++..+...|++++|...++++....|.+..++..++.++...|++++|++.++++++..|. ++..+..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 34567788889999999999999999999998999999999999999999999999999999999877 78999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcC
Q 003020 783 YAVDGRFKDVIGTFKDMVNAAIQP-DDFTFKSLGAVLMKCG 822 (856)
Q Consensus 783 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~G 822 (856)
|...|++++|...++++++. .| +...+..+..++.+.|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHh
Confidence 99999999999999999985 44 4556777777777665
No 139
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.78 E-value=5.5e-06 Score=84.24 Aligned_cols=195 Identities=8% Similarity=0.002 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 003020 615 LEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVG--NVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGY-LKEAQET 691 (856)
Q Consensus 615 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~ 691 (856)
+++++..++.++..+ +.+..+|+.-...+...| .+++++.+++++.+.. +-|..+|+.-.-++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567788888887765 347778887777777777 3788888888888765 6677888887777777787 5888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc------
Q 003020 692 YKLLRSLEASPDVYTSNCMIDLYSER--------------SMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN------ 751 (856)
Q Consensus 692 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 751 (856)
++.+++..+ -+...|+....++... +.++++++.+.+++...|.|..+|+.+-..+...
T Consensus 168 ~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 168 TDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 888887553 4566666666655544 4588999999999998999999998777777665
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHH
Q 003020 752 -----GRFEEATRIAKQMRESGLISDLLSYNNVLGL---YAVDGRFKDVIGTFKDMVNAAIQPDDFT-FKSLG 815 (856)
Q Consensus 752 -----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~ 815 (856)
+.++++++.++++++..|. +.-++..++.. ....|..+++...+.++++ +.|...- |.-+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLR 316 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHHH
Confidence 4588999999999998876 54443333322 2246778889999999887 4676543 44443
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=2.1e-08 Score=90.51 Aligned_cols=113 Identities=11% Similarity=-0.092 Sum_probs=95.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003020 656 YFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD 735 (856)
Q Consensus 656 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 735 (856)
.|+++.... +.+...+..++..+...|++++|+..|+.+..... .+...|..+..+|...|++++|+..|+++....|
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 455555443 34556778888899999999999999999888542 4677888899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 736 ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 736 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.++.++..++.+|...|++++|++.|+++++..|.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999998765
No 141
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.76 E-value=1.7e-06 Score=88.06 Aligned_cols=193 Identities=7% Similarity=0.069 Sum_probs=157.6
Q ss_pred HhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003020 610 MKLGQLE-MAEEVYKDMIRFNVEPDVVVYGVLINAFADVGN----------VKQAQSYFDAMESAGLPPNAVIYNSLIKL 678 (856)
Q Consensus 610 ~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 678 (856)
.+.|.++ +|+..++.++..++ -+..+|+.--..+...+. +++++.+++.+.... |-+..+|+.-..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455544 78999999888653 366677765555544443 678999999998875 6788999999888
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc----
Q 003020 679 YTKVG--YLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSM-VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN---- 751 (856)
Q Consensus 679 ~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 751 (856)
+...| .+++++.+++++.+... -+...|+.-..++...|. ++++++.++++++..|.|..+|+....++...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 88888 48999999999998653 567788888888888888 69999999999999999999999999888776
Q ss_pred ----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCH
Q 003020 752 ----------GRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVD-----------GRFKDVIGTFKDMVNAAIQPDD 808 (856)
Q Consensus 752 ----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~g~~p~~ 808 (856)
+.++++++.+++++...|. |..+|+.+-..+... +.++++++.++++++. .||.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 4589999999999999998 999998777777666 4688999999999984 7776
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.75 E-value=6.4e-08 Score=83.77 Aligned_cols=98 Identities=11% Similarity=-0.001 Sum_probs=86.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003020 707 SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVD 786 (856)
Q Consensus 707 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 786 (856)
+..++..+.+.|++++|+..++++.+..|.+...|..++.++...|++++|+..++++++..|. ++..+..++.+|...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 4566778889999999999999999999999999999999999999999999999999999988 889999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC
Q 003020 787 GRFKDVIGTFKDMVNAAIQPD 807 (856)
Q Consensus 787 g~~~~A~~~~~~~~~~g~~p~ 807 (856)
|++++|+..++++++. .|+
T Consensus 99 g~~~~A~~~~~~al~~--~P~ 117 (121)
T 1hxi_A 99 HNANAALASLRAWLLS--QPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHh--CcC
Confidence 9999999999998873 554
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.75 E-value=6.3e-08 Score=87.20 Aligned_cols=102 Identities=12% Similarity=0.008 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003020 668 NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM 747 (856)
Q Consensus 668 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 747 (856)
+...+..++..+.+.|++++|+..|+++.+..+ .+...|..++.+|...|++++|++.|+++.+..|.++.+|..++.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 456788888899999999999999999988542 4677888999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC
Q 003020 748 YKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
|...|++++|+..|+++++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998754
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.7e-07 Score=81.79 Aligned_cols=113 Identities=10% Similarity=-0.126 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
...+..++..+...|++++|+..|++.++... .+...|..++.++...|++++|+..++++.+..|.++.+|..++.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45677888888999999999999998888542 45778888999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHH
Q 003020 749 KRNGRFEEATRIAKQMRESG------LISDLLSYNNVLGLY 783 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~ 783 (856)
...|++++|+..++++++.. |. +...+..+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~-~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSS-AREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchh-HHHHHHHHHHHH
Confidence 99999999999999999887 54 555666555544
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.74 E-value=2.3e-07 Score=85.49 Aligned_cols=97 Identities=10% Similarity=0.006 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
...+..+...+...|++++|++.|+++++..|.+...|..++.+|...|++++|+..++++++..|. ++..|..++.+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3455566666667777777777777777666667777777777777777777777777777777665 666777777777
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003020 784 AVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 784 ~~~g~~~~A~~~~~~~~~ 801 (856)
...|++++|+..|+++++
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 777777777777777666
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.73 E-value=4.4e-08 Score=99.45 Aligned_cols=195 Identities=11% Similarity=-0.054 Sum_probs=134.6
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIK 677 (856)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 677 (856)
+...+..+...+...|++++|+..|+++++.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777888888899999999999888764 3377888888888999999999999999988764 567788888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 678 LYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 678 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 757 (856)
++...|++++|+..|+++.+..... ...+...+....+ ..++...........+.+......+...+ .|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQ-RLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT-TCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccc-hhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 9999999999999998877632110 0001111111111 12222222222233466666655554443 6889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 003020 758 TRIAKQMRESGLISDLLSYNNVLGLYAVD-GRFKDVIGTFKDMVN 801 (856)
Q Consensus 758 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 801 (856)
++.++++++..|. +......+...+.+. +++++|.++|.++.+
T Consensus 155 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999998887765 555666666666665 778899999988765
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.73 E-value=3.6e-07 Score=78.27 Aligned_cols=98 Identities=12% Similarity=0.060 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
...+..++..+...|++++|...++++....|.++..+..++.++...|++++|+..++++++..|. ++..+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 3455566667777777777777777777777777777777777777777777777777777777665 677777777777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 003020 784 AVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 784 ~~~g~~~~A~~~~~~~~~~ 802 (856)
...|++++|...+++.++.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 7777777777777777763
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.73 E-value=4e-07 Score=89.78 Aligned_cols=199 Identities=9% Similarity=-0.027 Sum_probs=144.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHH------------CCCC-----
Q 003020 611 KLGQLEMAEEVYKDMIRFNVEPDVVVYGVL-------INAFADVGNVKQAQSYFDAMES------------AGLP----- 666 (856)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~------------~~~~----- 666 (856)
..++...|.+.|.++.+..+ -....|..+ ..++...++..+++..+..... .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 57889999999999988653 366788877 4566666666666666665544 1110
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--HHHH
Q 003020 667 ---PNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN--EFTY 741 (856)
Q Consensus 667 ---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~ 741 (856)
.-....-.+..++...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+......++. ..++
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~ 174 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG 174 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHH
Confidence 002334456677889999999999998876533 544355566678889999999999998665543221 3478
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 742 AMMLIMYKRNGRFEEATRIAKQMRESGLISD--LLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSL 814 (856)
Q Consensus 742 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 814 (856)
..++.++...|++++|+..|+++......|. +......+.++.+.|+.++|...|++++.. .|+...+..|
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 8899999999999999999999985432143 357888999999999999999999999984 6773334443
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.71 E-value=2.2e-07 Score=88.67 Aligned_cols=131 Identities=14% Similarity=-0.038 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEAS-P--------------DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD 735 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 735 (856)
.+..++..+...|++++|+..|++..+.... | ....+..+..+|...|++++|+..++++.+..|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444555555555555555555555542211 1 025677788888889999999999999888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHc
Q 003020 736 ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVI-GTFKDMVNA 802 (856)
Q Consensus 736 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 802 (856)
.+..++..++.+|...|++++|++.|+++++..|. +...+..++.++...|+.+++. ..+..+...
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC------------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88889999999999999999999999999988877 7888888888888888887776 556666553
No 150
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.70 E-value=4.9e-07 Score=83.19 Aligned_cols=130 Identities=13% Similarity=0.054 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003020 635 VVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLY 714 (856)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 714 (856)
..+..+...+...|++++|...|++..+.. +.+..++..++.++...|++++|+..|++..+... .+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 456667777778888888888888887754 55677888888888888888888888888877532 4566777888888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHH
Q 003020 715 SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM--YKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 715 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 766 (856)
...|++++|.+.++++.+..|.+...+..+..+ +...|++++|++.+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888999999999988888888887777444444 7788889999888887654
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.70 E-value=3.2e-07 Score=81.41 Aligned_cols=99 Identities=8% Similarity=-0.036 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003020 702 PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLG 781 (856)
Q Consensus 702 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 781 (856)
.+...+..++..+...|++++|+..|+++....|.++.+|..++.++...|++++|+..++++++..|. ++..|..++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 456677788888888888888888888888888888888888888888888888888888888888877 7888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 003020 782 LYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 782 ~~~~~g~~~~A~~~~~~~~~ 801 (856)
+|...|++++|+..|+++++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 88888888888888888877
No 152
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.70 E-value=1.6e-07 Score=90.01 Aligned_cols=155 Identities=8% Similarity=-0.014 Sum_probs=101.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS----LEASP-DVYTSNCMIDLYSERSMV 720 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~ 720 (856)
..|++++|.+.++.+... ......++..+...+...|++++|+..+++..+ .+..+ ....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456667776644444331 123445666777777777777777777766655 11111 234566777777788888
Q ss_pred HHHHHHHHHHHhC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHhcCC
Q 003020 721 RQAEEIFEIMKKK---GDAN----EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI-SDL----LSYNNVLGLYAVDGR 788 (856)
Q Consensus 721 ~~A~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~----~~~~~l~~~~~~~g~ 788 (856)
++|.+.+++..+. .+.+ ..++..++.++...|++++|+..++++++.... .++ .++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888776654 2322 345778888888888888888888888754211 122 346788889999999
Q ss_pred HHHHHHHHHHHHH
Q 003020 789 FKDVIGTFKDMVN 801 (856)
Q Consensus 789 ~~~A~~~~~~~~~ 801 (856)
+++|...+++.++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888876
No 153
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.69 E-value=4.9e-06 Score=84.93 Aligned_cols=208 Identities=11% Similarity=0.041 Sum_probs=165.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-CHHH
Q 003020 611 KLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVG-NVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKV-G-YLKE 687 (856)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-~~~~ 687 (856)
+.+..++|++++++++..++ -+..+|+.-...+...| .+++++.+++.++... |-+..+|+.-..++... + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 34556789999999998763 37788999888888888 5999999999999875 67889999988888887 7 8999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC------
Q 003020 688 AQETYKLLRSLEASPDVYTSNCMIDLYSERSMVR--------QAEEIFEIMKKKGDANEFTYAMMLIMYKRNGR------ 753 (856)
Q Consensus 688 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 753 (856)
++++++++++... -+...|+.-..++...|.++ ++++.++++.+..|.|..+|+....++.+.++
T Consensus 144 EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 9999999988543 46667777666666666665 99999999999999999999999999998887
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----CCCC
Q 003020 754 -FEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRF--------------------KDVIGTFKDMVNAA-----IQPD 807 (856)
Q Consensus 754 -~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~g-----~~p~ 807 (856)
++++++.+++++...|. |...|+.+...+.+.|+. .+......++...+ -.+.
T Consensus 223 ~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 79999999999999998 999999999999888875 23333333333221 1356
Q ss_pred HHHHHHHHHHHHHcC
Q 003020 808 DFTFKSLGAVLMKCG 822 (856)
Q Consensus 808 ~~~~~~l~~~~~~~G 822 (856)
...+..|...+...|
T Consensus 302 ~~al~~l~d~~~~~~ 316 (349)
T 3q7a_A 302 PLALEYLADSFIEQN 316 (349)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC
Confidence 677888999998888
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.69 E-value=6.7e-08 Score=86.56 Aligned_cols=102 Identities=12% Similarity=-0.086 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003020 668 NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM 747 (856)
Q Consensus 668 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 747 (856)
+...+..++..+...|++++|+..|+.+....+ .+...|..+..++...|++++|+..|+++....|.++..+..++.+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 445677778888899999999999999888542 4677788889999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC
Q 003020 748 YKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
|...|++++|++.++++++..|.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999988765
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.68 E-value=2.8e-06 Score=86.81 Aligned_cols=167 Identities=10% Similarity=-0.044 Sum_probs=127.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 003020 601 PYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPD-----VVVYGVLINAFADVGNVKQAQSYFDAMESAGL---PPN--AV 670 (856)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~ 670 (856)
.+...+..+...|++++|.+.+.+.++...... ...+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 345567778889999999999998887543211 12344466667788999999999999876321 122 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC------CCH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSL-EASPD-----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD------ANE 738 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~ 738 (856)
+++.++..|...|++++|+..|+++.+. ...|+ ..++..++.+|...|++++|++.++++.+..+ .-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8899999999999999999999988731 11122 25788999999999999999999998876431 126
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHHHc
Q 003020 739 FTYAMMLIMYKRNGRFEEA-TRIAKQMRES 767 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 767 (856)
.+|..++.+|...|++++| ...+++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7889999999999999999 7878888753
No 156
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.67 E-value=1.8e-07 Score=87.48 Aligned_cols=124 Identities=10% Similarity=0.070 Sum_probs=96.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH--H
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDL-YSERSMV--R 721 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 721 (856)
...|++++|...+++..+.. +.+...+..++.+|...|++++|+..|+++.+... .+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 34577788888888877654 56777888888888888888888888888877432 356667777777 7788888 8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 722 QAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 722 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
+|...++++.+..|.+..++..++.+|...|++++|+..++++++..|.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 9999999988888888888999999999999999999999999988766
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.67 E-value=7e-07 Score=76.43 Aligned_cols=112 Identities=13% Similarity=0.001 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
...+..++..+...|++++|...|++..+... .+...+..++.++...|++++|...++++.+..|.++..+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45667777888888888888888888877432 35667778888888888889998888888888888888888889999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003020 749 KRNGRFEEATRIAKQMRESGLISDLLSYNNVLGL 782 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 782 (856)
...|++++|.+.++++++.+|. ++..+..++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHh
Confidence 9999999999999999888776 66777666654
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.66 E-value=3e-07 Score=80.57 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CC----HHHHHH
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI--SD----LLSYNN 778 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~~ 778 (856)
..+..++..+...|++++|...++++....|.++.++..++.++...|++++|+..++++++..+. ++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 456677777888888888888888888877888888888888888888888888888888877553 11 677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 779 VLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVL 818 (856)
Q Consensus 779 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 818 (856)
++.+|...|++++|...|+++++. .|+...+..+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 888888888888888888888874 45655555554443
No 159
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.63 E-value=7e-07 Score=88.02 Aligned_cols=126 Identities=11% Similarity=-0.000 Sum_probs=54.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC--ChHhHHHHHHHHHhc
Q 003020 535 MVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVS--DCIPYCAVISSYMKL 612 (856)
Q Consensus 535 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 612 (856)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .| ....+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3344444444444444444443321 222233333334444444444444444332211 00 012344445555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003020 613 GQLEMAEEVYKDMIRFNVEPD--VVVYGVLINAFADVGNVKQAQSYFDAMESA 663 (856)
Q Consensus 613 g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (856)
|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555555555555543221122 223444444555555555555555555554
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=1.1e-06 Score=79.01 Aligned_cols=108 Identities=10% Similarity=-0.056 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMM 744 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 744 (856)
...+..++..+...|++++|+..|++..+.. |+ ...+..+..+|...|++++|+..++++.+..|.+...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3444444445555555555555555544422 33 23444444444445555555555555444444444444455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 745 LIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNV 779 (856)
Q Consensus 745 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 779 (856)
+.++...|++++|++.++++++..|. +...+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 139 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEAL 139 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence 55555555555555555555544443 33333333
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.61 E-value=4.1e-07 Score=83.75 Aligned_cols=111 Identities=11% Similarity=-0.046 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003020 667 PNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLI 746 (856)
Q Consensus 667 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 746 (856)
.+...+..++..+...|++++|+..|++.++... .+...|..+..+|...|++++|+..++++++..|.+..+|..++.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456788888889999999999999998888542 367788889999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 747 MYKRNGRFEEATRIAKQMRESGLISDLLSYNNV 779 (856)
Q Consensus 747 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 779 (856)
+|...|++++|++.|+++++..|. +...|...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~ 119 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGN-GGSDAMKR 119 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSS-SCCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 999999999999999999998877 54544333
No 162
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=7.1e-07 Score=85.38 Aligned_cols=157 Identities=11% Similarity=0.087 Sum_probs=108.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCC
Q 003020 610 MKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMES----AGLP-PNAVIYNSLIKLYTKVGY 684 (856)
Q Consensus 610 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~ 684 (856)
...|++++|.+.++.+.. .+.....++..+...+...|++++|...+++... .+.+ ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 346778888875554433 2223456777788888888888888888887765 1112 234567788888888899
Q ss_pred HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCH----HHHHHHHHHHHHcC
Q 003020 685 LKEAQETYKLLRSL----EASP--DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG--DANE----FTYAMMLIMYKRNG 752 (856)
Q Consensus 685 ~~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~l~~~~~~~g 752 (856)
+++|...+++..+. +..| ....+..+...+...|++++|...+++..... ..+. .++..++.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99998888877652 1111 13457778888888999999999988877543 2222 34678889999999
Q ss_pred CHHHHHHHHHHHHHc
Q 003020 753 RFEEATRIAKQMRES 767 (856)
Q Consensus 753 ~~~~A~~~~~~~~~~ 767 (856)
++++|.+.++++++.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1.2e-06 Score=78.80 Aligned_cols=112 Identities=10% Similarity=-0.036 Sum_probs=98.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003020 702 PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNN 778 (856)
Q Consensus 702 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 778 (856)
.+...+..++..+...|++++|++.++++.+..|.+ ..++..++.+|...|++++|+..++++++..|. ++..+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 456788889999999999999999999999988776 789999999999999999999999999999887 8899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 003020 779 VLGLYAVDGRFKDVIGTFKDMVNAAIQPDD-FTFKSLGA 816 (856)
Q Consensus 779 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~ 816 (856)
++.+|...|++++|...|++.++. .|+. ..+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 141 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHH
Confidence 999999999999999999999985 5654 34444433
No 164
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.59 E-value=1.3e-06 Score=77.55 Aligned_cols=101 Identities=13% Similarity=-0.006 Sum_probs=72.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC-------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CC
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKGDA-------N-----EFTYAMMLIMYKRNGRFEEATRIAKQMRES-------GL 769 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~ 769 (856)
..+..+...|++++|++.|+++++..|. + ...|..++.++.+.|++++|+..++++++. +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3344444555555555555555544443 3 338888888888888888888888888888 77
Q ss_pred CCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 003020 770 ISDLLSY----NNVLGLYAVDGRFKDVIGTFKDMVN-----AAIQPDDFT 810 (856)
Q Consensus 770 ~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~ 810 (856)
. +...| +..+.++...|++++|+..|++.++ .|+.+....
T Consensus 96 d-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 96 D-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp T-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred c-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 6 77788 8999999999999999999998877 345555443
No 165
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=1.7e-07 Score=95.02 Aligned_cols=196 Identities=9% Similarity=0.011 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 563 DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLIN 642 (856)
Q Consensus 563 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 642 (856)
+...+..+...+...|++++|+..++++++.. +.+...+..+..+|.+.|++++|+..++++++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666667777777777777777776653 3366778888888888888888888888888764 336778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003020 643 AFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQ 722 (856)
Q Consensus 643 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 722 (856)
++...|++++|...|++..+.+ +.+...+...+....+. .++... ..........+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 8888999999998888876642 11111111111111111 111111 222223333444444444333 2688999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc
Q 003020 723 AEEIFEIMKKKGDANEFTYAMMLIMYKRN-GRFEEATRIAKQMRES 767 (856)
Q Consensus 723 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 767 (856)
|++.++++.+..|.+......+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999888888877777777777666 6788999999888764
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.58 E-value=5e-07 Score=82.94 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 735 DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 735 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
|.+..+|..++.+|.+.|++++|+..++++++.+|. ++..|..++.+|...|++++|+..|++.++. .|+..
T Consensus 60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 334456666666666667777777777776666665 6666666667777777777777777666663 45443
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.57 E-value=1.3e-06 Score=76.44 Aligned_cols=98 Identities=8% Similarity=-0.070 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKGDANE---FTYAMMLIMYKRNGRFEEATRIAKQMRESGLISD---LLSYNNVLGL 782 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~ 782 (856)
.++..+...|++++|...++++.+..|.++ .++..++.++...|++++|+..++++++..|. + +.++..++.+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 455667777888888888888777766666 57777888888888888888888888877766 4 5677778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 783 YAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 783 ~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
|...|++++|+..|+++++. .|+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~--~p~~~ 110 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ--YPGSD 110 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred HHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence 88888888888888887774 45543
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.56 E-value=1.6e-07 Score=89.71 Aligned_cols=142 Identities=8% Similarity=-0.010 Sum_probs=109.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH----------------HH
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANE----------------FT 740 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~ 740 (856)
......|.++++.+.|+...+.. ......+..++..+...|++++|+..|+++.+..|.++ .+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33445566777766665322210 01244677888899999999999999999999877665 88
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003020 741 YAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD-DFTFKSLGAVLM 819 (856)
Q Consensus 741 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 819 (856)
+..++.+|...|++++|+..++++++..|. ++.++..++.+|...|++++|+..|++.++. .|+ ...+..+..++.
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999887 8899999999999999999999999999985 554 455777777777
Q ss_pred HcC
Q 003020 820 KCG 822 (856)
Q Consensus 820 ~~G 822 (856)
..|
T Consensus 168 ~~~ 170 (198)
T 2fbn_A 168 KLK 170 (198)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 169
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=1.2e-06 Score=91.26 Aligned_cols=150 Identities=13% Similarity=-0.006 Sum_probs=113.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHH
Q 003020 614 QLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPN---------------AVIYNSLIKL 678 (856)
Q Consensus 614 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------~~~~~~l~~~ 678 (856)
++++|...|+...+.. +.+...+..+...+.+.|++++|+..|++.+... +.+ ..+|..+..+
T Consensus 128 ~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333221 1134566667777777777777777777776653 222 5788899999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH-
Q 003020 679 YTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEA- 757 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A- 757 (856)
|.+.|++++|+..|+++++... .+...|..+..+|...|++++|+..|+++++..|.+..++..++.++...|++++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988542 46778889999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 003020 758 TRIAKQMRE 766 (856)
Q Consensus 758 ~~~~~~~~~ 766 (856)
...|++|..
T Consensus 285 ~~~~~~~~~ 293 (336)
T 1p5q_A 285 KKLYANMFE 293 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456776654
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.54 E-value=1.2e-06 Score=77.56 Aligned_cols=104 Identities=10% Similarity=-0.134 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003020 666 PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMML 745 (856)
Q Consensus 666 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 745 (856)
+.+...+..++..+...|++++|+..|+...+... .+...+..++.++...|++++|+..++++.+..|.++.++..++
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45678888889999999999999999998887542 45778888899999999999999999999998899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 746 IMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 746 ~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.++...|++++|+..++++++..|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 9999999999999999999887544
No 171
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=1.4e-06 Score=75.95 Aligned_cols=105 Identities=11% Similarity=0.037 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-------HHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN-------EFTYA 742 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~ 742 (856)
..+..++..+.+.|++++|++.|+++++..+ .+...|..++.+|...|++++|++.++++++..|.+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4566777778888888888888887777432 346677777888888888888888888777655322 23677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 743 MMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYN 777 (856)
Q Consensus 743 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 777 (856)
.++.++...|++++|++.|+++++..+ ++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~--~~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFR--DPELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSC--CHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc--CHHHHH
Confidence 888888899999999999999888654 544443
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.51 E-value=8.3e-07 Score=96.85 Aligned_cols=97 Identities=11% Similarity=-0.076 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
...|..+..+|.+.|++++|+..++++++..|.+..+|..++.+|...|++++|+..|+++++..|. +..++..++.++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 395 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4577788888999999999999999999988999999999999999999999999999999998877 778888999999
Q ss_pred HhcCCHHHHH-HHHHHHHH
Q 003020 784 AVDGRFKDVI-GTFKDMVN 801 (856)
Q Consensus 784 ~~~g~~~~A~-~~~~~~~~ 801 (856)
...|++++|. ..+++|..
T Consensus 396 ~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 396 KKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999888776 34555544
No 173
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.48 E-value=3.1e-07 Score=81.25 Aligned_cols=104 Identities=13% Similarity=0.003 Sum_probs=85.8
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 715 SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRF----------EEATRIAKQMRESGLISDLLSYNNVLGLYA 784 (856)
Q Consensus 715 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 784 (856)
.+.+.+++|++.+++..+..|.++..|..++.++...+++ ++|+..|+++++.+|. +..+|+.++.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3456688888999998888888999998888888888765 5999999999999988 8899999999998
Q ss_pred hcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003020 785 VDG-----------RFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKC 821 (856)
Q Consensus 785 ~~g-----------~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 821 (856)
..| ++++|++.|+++++ +.|+...|...+...-+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ka 137 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTAKA 137 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHhC
Confidence 875 89999999999998 588887776665544443
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.47 E-value=2.3e-07 Score=79.75 Aligned_cols=84 Identities=11% Similarity=0.035 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003020 717 RSMVRQAEEIFEIMKKKG---DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVI 793 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 793 (856)
.|++++|+..|+++++.+ |.+..++..++.+|...|++++|+..++++++..|. ++..+..++.+|...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666666653 445556666666666666666666666666666665 5666666666666666666666
Q ss_pred HHHHHHHH
Q 003020 794 GTFKDMVN 801 (856)
Q Consensus 794 ~~~~~~~~ 801 (856)
..+++.++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666665
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=1.1e-06 Score=74.43 Aligned_cols=98 Identities=9% Similarity=-0.128 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI-SDLLSYNNVLGLY 783 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~ 783 (856)
..+..++..+...|++++|...++++.+..|.+..++..++.++...|++++|++.++++++..+. .+...+..++.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 345566666777777777777777777766777777777777777777777777777777776543 1356677777777
Q ss_pred Hhc-CCHHHHHHHHHHHHHc
Q 003020 784 AVD-GRFKDVIGTFKDMVNA 802 (856)
Q Consensus 784 ~~~-g~~~~A~~~~~~~~~~ 802 (856)
... |++++|++.+++.++.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 777 7777777777777664
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.45 E-value=1.1e-06 Score=80.57 Aligned_cols=115 Identities=13% Similarity=-0.010 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CC--------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSL--------EA--------S-PDVYTSNCMIDLYSERSMVRQAEEIFEIMKK 732 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~--------~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 732 (856)
..+...+..+.+.|++++|+..|++.++. .. . .+...|..+..+|...|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555566666666666666666665553 00 1 2245788889999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh
Q 003020 733 KGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDL-LSYNNVLGLYAV 785 (856)
Q Consensus 733 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 785 (856)
..|.++.+|..++.+|...|++++|+..++++++..|. ++ .....+..+...
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA-AASVVAREMKIVTER 144 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877 65 445555544433
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.45 E-value=1.4e-06 Score=75.28 Aligned_cols=99 Identities=10% Similarity=-0.128 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR 750 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 750 (856)
.+..++..+.+.|++++|+..|+++++... .+...|..+..++...|++++|+..++++.+..|.+..++..++.++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 345667788899999999999999888542 3677888889999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCC
Q 003020 751 NGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 751 ~g~~~~A~~~~~~~~~~~~~ 770 (856)
.|++++|+..++++++..|.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999987654
No 178
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.45 E-value=5.6e-06 Score=92.27 Aligned_cols=174 Identities=6% Similarity=-0.014 Sum_probs=142.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003020 614 QLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGN----------VKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVG 683 (856)
Q Consensus 614 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 683 (856)
..++|++.+++++..++ .+..+|+.-..++...|+ +++++..++++.+.. |-+..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 45677888988888753 367788877777777776 889999999998875 667888888888888888
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc---------
Q 003020 684 --YLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERS-MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN--------- 751 (856)
Q Consensus 684 --~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 751 (856)
+++++++.++++.+.+. -+...|+....++...| .++++++.++++.+..|.|..+|+....++...
T Consensus 122 ~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 122 EPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 67999999999988553 46777888777888888 889999999999998899999999888888774
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 752 -----GRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKD 791 (856)
Q Consensus 752 -----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 791 (856)
+.+++|++.++++++..|. |..+|+.+...+.+.|++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5578999999999999888 88999999999888888555
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.44 E-value=1.6e-06 Score=73.27 Aligned_cols=104 Identities=12% Similarity=-0.014 Sum_probs=93.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHHHHHH
Q 003020 667 PNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA--NEFTYAMM 744 (856)
Q Consensus 667 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l 744 (856)
.+...+..++..+...|++++|+..|+++.+... .+...+..++.++...|++++|.+.++++.+..|. +..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3556778889999999999999999999988542 45778889999999999999999999999999998 99999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHcCCCC
Q 003020 745 LIMYKRN-GRFEEATRIAKQMRESGLIS 771 (856)
Q Consensus 745 ~~~~~~~-g~~~~A~~~~~~~~~~~~~p 771 (856)
+.++... |++++|++.++++.+..|.+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999999 99999999999999988763
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.44 E-value=1.5e-06 Score=75.90 Aligned_cols=113 Identities=14% Similarity=0.099 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-------HHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN-------EFTY 741 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~ 741 (856)
...+..++..+...|++++|+..|+++.+.. +.+...+..++.++...|++++|...++++....|.+ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456677777777888888888887777643 2356667777778888888888888888877765444 7788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 742 AMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYA 784 (856)
Q Consensus 742 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 784 (856)
..++.++...|++++|.+.++++++..+ ++..+..+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR--TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 8888888899999999999998888764 5666666655544
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.44 E-value=5.1e-06 Score=92.60 Aligned_cols=170 Identities=9% Similarity=0.014 Sum_probs=146.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003020 648 GNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGY----------LKEAQETYKLLRSLEASPDVYTSNCMIDLYSER 717 (856)
Q Consensus 648 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 717 (856)
...++|++.+++++..+ |-+..+|+.-..++...|+ ++++++.++.+.+... -+...|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 34578899999999875 6677889988888888887 9999999999998543 4567888888888899
Q ss_pred C--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------
Q 003020 718 S--MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG-RFEEATRIAKQMRESGLISDLLSYNNVLGLYAVD-------- 786 (856)
Q Consensus 718 g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 786 (856)
+ +++++++.++++.+.+|.|..+|+....++.+.| .++++++.++++++.+|. +..+|+..+.++...
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 9 7799999999999999999999999999999999 899999999999999998 999999999998874
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcC
Q 003020 787 ------GRFKDVIGTFKDMVNAAIQPDDF-TFKSLGAVLMKCG 822 (856)
Q Consensus 787 ------g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~G 822 (856)
++++++++.+++++.. .|+.. .|..+...+.+.|
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCC
T ss_pred cccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCC
Confidence 5689999999999984 66654 5777777777766
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.42 E-value=4.7e-07 Score=77.76 Aligned_cols=94 Identities=12% Similarity=0.029 Sum_probs=75.9
Q ss_pred hcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003020 681 KVGYLKEAQETYKLLRSLEA--SPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEAT 758 (856)
Q Consensus 681 ~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 758 (856)
..|++++|+..|+++++.+. +.+...+..++.+|...|++++|+..++++.+..|.++.++..++.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46788899999999888531 2235578888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHH
Q 003020 759 RIAKQMRESGLISDLLS 775 (856)
Q Consensus 759 ~~~~~~~~~~~~p~~~~ 775 (856)
..++++++..|. ++..
T Consensus 82 ~~~~~al~~~p~-~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSD-DETI 97 (117)
T ss_dssp HHHHHHHHHHCC-CHHH
T ss_pred HHHHHHHHhCCC-cHHH
Confidence 999999998776 5543
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.41 E-value=7.4e-06 Score=71.43 Aligned_cols=106 Identities=11% Similarity=-0.035 Sum_probs=80.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHH
Q 003020 673 NSLIKLYTKVGYLKEAQETYKLLRSLEASPD--VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMMLIM 747 (856)
Q Consensus 673 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~ 747 (856)
..++..+...|++++|...|+.+.+...... ...+..++.++...|++++|...++++.+..|.+ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3456677788888888888888877432111 1466677888888899999999998888887777 7778888899
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 748 YKRNGRFEEATRIAKQMRESGLISDLLSYNNV 779 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 779 (856)
+...|++++|+..++++++..|. ++......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~a~ 116 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPG-SDAARVAQ 116 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-SHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-ChHHHHHH
Confidence 99999999999999999888765 54444433
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.41 E-value=2.3e-06 Score=90.13 Aligned_cols=90 Identities=11% Similarity=-0.120 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
...|..+..+|.+.|++++|++.++++++..|.+..+|..++.+|...|++++|++.++++++..|. +...+..+..++
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~ 351 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4567777778888888888888888888877888888888888888888888888888888888776 777777888887
Q ss_pred HhcCCHHHHHH
Q 003020 784 AVDGRFKDVIG 794 (856)
Q Consensus 784 ~~~g~~~~A~~ 794 (856)
...++.+++.+
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776643
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.41 E-value=1.4e-06 Score=79.60 Aligned_cols=132 Identities=9% Similarity=-0.008 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CC----H
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-SPD----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD--AN----E 738 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~----~ 738 (856)
.++..++..+...|++++|+..+++..+... .++ ...+..+...+...|++++|.+.++++.+..+ .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3455666666667777777776666554210 011 13566677777777888888887777665431 11 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRESGLI-S----DLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
.++..++.++...|++++|++.++++++.... . ...++..++.+|...|++++|.+.+++.++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 46778888889999999999999888765211 1 135678889999999999999999998876
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.40 E-value=7.4e-07 Score=97.68 Aligned_cols=122 Identities=12% Similarity=-0.055 Sum_probs=102.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGR 753 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 753 (856)
.++..+.+.|++++|++.|+++.+... .+...|..+..+|.+.|++++|++.++++.+..|.+..++..++.+|...|+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344556778999999999999888532 3577888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 003020 754 FEEATRIAKQMRESGLISDLLSYNNVLGL--YAVDGRFKDVIGTFK 797 (856)
Q Consensus 754 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 797 (856)
+++|++.++++++..|. +...+..++.+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999887 66778778777 888999999999998
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.39 E-value=7.2e-06 Score=89.12 Aligned_cols=194 Identities=9% Similarity=-0.010 Sum_probs=119.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-
Q 003020 608 SYMKLGQLEMAEEVYKDMIRFNVEPD----------------VVVYGVLINAFADVGNVKQAQSYFDAMESAG-LPPNA- 669 (856)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~- 669 (856)
.+.+.|++++|++.|..+++...... ..++..++..|...|++++|.+++..+.+.- ..++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 34555666666666666665322110 1235667777777777777777777665421 01111
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------C
Q 003020 670 ---VIYNSLIKLYTKVGYLKEAQETYKLLRS----LEASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKG------D 735 (856)
Q Consensus 670 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~ 735 (856)
.+.+.+...+...|++++|..+++.... .+..+. ..++..++..|...|++++|..+++++.... +
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 2233444445556777888777766544 222222 3466677778888888888888877765432 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 736 ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESG---LISD---LLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 736 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
....++..++..|...|++++|..++++++... +.|. ...+..++..+...|++++|...|.++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 234467777888888888888888887776542 1111 24566677777788888888877777655
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.37 E-value=2.1e-06 Score=76.12 Aligned_cols=101 Identities=12% Similarity=-0.026 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASP------DV-----YTSNCMIDLYSERSMVRQAEEIFEIMKKK----- 733 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 733 (856)
..+...+..+.+.|++++|+..|++.++..... +. ..|..+..++...|++++|+..++++++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345556666777777888877777777633220 22 37888888899999999999999999888
Q ss_pred --CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 734 --GDANEFTY----AMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 734 --~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.|.+...| ...+.++...|++++|+..|+++++..|.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 89999999 99999999999999999999999988655
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.35 E-value=6.6e-07 Score=93.35 Aligned_cols=149 Identities=8% Similarity=-0.011 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003020 634 VVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDL 713 (856)
Q Consensus 634 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 713 (856)
...+..+...+.+.|++++|+..|++.+... |+... +...|+++++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4567777777788888888888888877652 33321 223344444433221 1267788889
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHH
Q 003020 714 YSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGL-YAVDGRFKDV 792 (856)
Q Consensus 714 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A 792 (856)
|.+.|++++|+..++++++..|.+..+|..++.+|...|++++|+..|+++++..|. +...+..+..+ ....+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988877 77788888777 4456777888
Q ss_pred HHHHHHHHHc
Q 003020 793 IGTFKDMVNA 802 (856)
Q Consensus 793 ~~~~~~~~~~ 802 (856)
..+|++|+..
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8999998763
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.29 E-value=5.7e-06 Score=70.59 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 722 QAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 722 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+|++.++++.+..|.++..+..++.+|...|++++|+..++++++..|. +...|..++.+|...|++++|...|++.++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5778888888888889999999999999999999999999999998877 788899999999999999999999998877
Q ss_pred cC-CCCCHHHHHHHHHHHHHcC
Q 003020 802 AA-IQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 802 ~g-~~p~~~~~~~l~~~~~~~G 822 (856)
.. -.++......+...+.+.|
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhc
Confidence 31 1133444445544444443
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.27 E-value=8.4e-06 Score=88.88 Aligned_cols=113 Identities=9% Similarity=0.055 Sum_probs=86.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003020 707 SNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---------------EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS 771 (856)
Q Consensus 707 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 771 (856)
+..+...+.+.|++++|+..|+++++..|.+ ..+|..++.+|.+.|++++|+..++++++..|.
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~- 349 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA- 349 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-
Confidence 3344444444444444444444444443333 578999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcC
Q 003020 772 DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF-TFKSLGAVLMKCG 822 (856)
Q Consensus 772 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~G 822 (856)
++.+|..++.+|...|++++|+..|+++++ +.|+.. .+..+..++.+.|
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999998 467654 5778888888887
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.27 E-value=8.8e-06 Score=85.70 Aligned_cols=131 Identities=8% Similarity=-0.074 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYK 749 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 749 (856)
..+..++..+.+.|++++|+..|+++++.- +.. .. ....+......|.+..+|..++.+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~-------~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RA-------AAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HH-------HSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------cc-------ccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666555410 000 00 00111222244667789999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC
Q 003020 750 RNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD-DFTFKSLGAVLMKCG 822 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~G 822 (856)
+.|++++|++.++++++..|. ++.+|..++.+|...|++++|+..|+++++. .|+ ...+..+..++.+.|
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999887 8899999999999999999999999999985 564 455777777777777
No 193
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.27 E-value=4e-06 Score=91.85 Aligned_cols=117 Identities=13% Similarity=0.057 Sum_probs=64.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 644 FADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQA 723 (856)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 723 (856)
+.+.|++++|+..|++..+.. +.+..+|..++.+|.+.|++++|++.|+++.+... .+...+..++.+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 444555666666666555542 33455566666666666666666666666655431 2344555666666666666666
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 003020 724 EEIFEIMKKKGDANEFTYAMMLIM--YKRNGRFEEATRIAK 762 (856)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 762 (856)
++.++++.+..|.+..++..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666555555555555555 555666666666666
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=3.9e-05 Score=83.24 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=17.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCC
Q 003020 536 VKAYGMGRNYDKACNLFDSMTSHG 559 (856)
Q Consensus 536 i~~~~~~g~~~~A~~~~~~m~~~~ 559 (856)
...+.+.|++++|++.|..+.+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~ 34 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKD 34 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC
Confidence 455677788888888888877753
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.1e-06 Score=74.29 Aligned_cols=95 Identities=8% Similarity=0.030 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHH
Q 003020 703 DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISD------LLSY 776 (856)
Q Consensus 703 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~ 776 (856)
+...+..++..+...|++++|++.++++.+..|.++.++..++.++...|++++|++.++++++..|. + ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 34566677778888888888888888888888888888888888888888888888888888887766 4 5667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 003020 777 NNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 777 ~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
..++.++...|++++|+..+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 7777888777777776655543
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.17 E-value=8e-06 Score=67.54 Aligned_cols=87 Identities=16% Similarity=0.152 Sum_probs=65.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHH
Q 003020 734 GDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAA-IQPDDFTFK 812 (856)
Q Consensus 734 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~ 812 (856)
.|.++.++..++.+|...|++++|++.++++++.+|. ++..|..++.+|...|++++|+..|++.++.. -.++.....
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 4778888888888888999999999999999888877 77888888999999999999999888887631 134555555
Q ss_pred HHHHHHHHc
Q 003020 813 SLGAVLMKC 821 (856)
Q Consensus 813 ~l~~~~~~~ 821 (856)
.+...+.+.
T Consensus 82 ~l~~~l~~~ 90 (100)
T 3ma5_A 82 ELQDAKLKA 90 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 555554443
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.15 E-value=2.4e-05 Score=63.03 Aligned_cols=80 Identities=13% Similarity=0.066 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV 785 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 785 (856)
.+..+...+...|++++|+..++++.+..|.+..++..++.++...|++++|+..++++++..|. ++..+..++.++..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHh
Confidence 44445555555555555555555555555555555555555555555555555555555555544 45555555555544
Q ss_pred c
Q 003020 786 D 786 (856)
Q Consensus 786 ~ 786 (856)
.
T Consensus 90 ~ 90 (91)
T 1na3_A 90 Q 90 (91)
T ss_dssp H
T ss_pred c
Confidence 3
No 198
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=1.2e-05 Score=73.21 Aligned_cols=132 Identities=17% Similarity=0.112 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HH
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESAGL-PPN----AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-SPD----VY 705 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~ 705 (856)
++..+...+...|++++|...+++..+... .++ ..++..++..+...|++++|...+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 444555555556666666666655543210 011 13566666677777777777777766554110 011 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC--C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKG--D----ANEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
.+..+..++...|++++|.+.++++.+.. . ....++..++..+...|++++|.+.++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56667777777888888888777766542 1 12346778888888999999999998888765
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.13 E-value=1.5e-05 Score=86.59 Aligned_cols=104 Identities=13% Similarity=0.013 Sum_probs=57.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C-CCccH-HHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchh
Q 003020 231 TYGTLIDVCSKGGLKEEAVCWLERMNEG-----G-MEPDE-VTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTK 303 (856)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 303 (856)
+++.++.+|..+|++++|..+++++++. | -+|+. .+++.+...|..+|++++|+.+|++....
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i---------- 422 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI---------- 422 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------
Confidence 4555555555555555555555554432 2 12232 35566666666666666666666655432
Q ss_pred hhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 304 TMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLR 349 (856)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 349 (856)
.+....++++....+.+.+..++...+.+++|..+|.++.+
T Consensus 423 -----~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 423 -----LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp -----HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112334444455666677777777777777777777754
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.13 E-value=2.7e-05 Score=84.56 Aligned_cols=123 Identities=10% Similarity=-0.065 Sum_probs=88.9
Q ss_pred HHhcCCHHHHHHHHHHHHhC---CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCH---HHHHH
Q 003020 679 YTKVGYLKEAQETYKLLRSL---EAS---PD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKK-----GDANE---FTYAM 743 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~~---~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---~~~~~ 743 (856)
+..+|++++|+.++++.++. -+. |+ ..+++.|+.+|...|++++|+.++++++.. ++.++ .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777777766542 111 22 346777888888888888888888776543 33333 46788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 744 MLIMYKRNGRFEEATRIAKQMRE-----SGLISDL---LSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 744 l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
|+.+|..+|++++|+.+++++++ .|+. .+ .+...+..++...|++++|..+|+++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999988875 3655 44 34577788888999999999999998773
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.07 E-value=7.9e-05 Score=65.73 Aligned_cols=111 Identities=10% Similarity=-0.057 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 003020 683 GYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEEAT 758 (856)
Q Consensus 683 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 758 (856)
+++++|+++|++..+.+. |+.. +...|...+.+++|++.|++..+. .++.++..|+..|.. .+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 356677777777766552 3333 556666666677777777777765 466677777777777 67788888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 003020 759 RIAKQMRESGLISDLLSYNNVLGLYAV----DGRFKDVIGTFKDMVNAA 803 (856)
Q Consensus 759 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 803 (856)
+.|+++.+.+ ++.++..|+..|.. .+++++|+.+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888877764 66777777777777 777888888888877765
No 202
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.04 E-value=9.5e-06 Score=84.48 Aligned_cols=152 Identities=13% Similarity=0.029 Sum_probs=88.3
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003020 599 CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKL 678 (856)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 678 (856)
...+..+...+.+.|++++|+..|++++.. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455778888899999999999999999875 344332 223344444443221 1378888999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-HHcCCHHHH
Q 003020 679 YTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY-KRNGRFEEA 757 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A 757 (856)
|.+.|++++|+..|+++++... .+...|..+..+|...|++++|+..|+++.+..|.+..++..+..+. ...+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988542 45778889999999999999999999999988888888888888774 455678888
Q ss_pred HHHHHHHHHcCCC
Q 003020 758 TRIAKQMRESGLI 770 (856)
Q Consensus 758 ~~~~~~~~~~~~~ 770 (856)
.+.|++++...|.
T Consensus 319 ~~~~~~~l~~~p~ 331 (338)
T 2if4_A 319 KEMYKGIFKGKDE 331 (338)
T ss_dssp -------------
T ss_pred HHHHHHhhCCCCC
Confidence 9999999887665
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.03 E-value=4.5e-05 Score=61.40 Aligned_cols=83 Identities=17% Similarity=0.270 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD-DFTFKSLG 815 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 815 (856)
+...+..++..+...|++++|+..++++++..|. ++..+..++.+|...|++++|+..+++.++. .|+ ...+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 4668889999999999999999999999999887 8899999999999999999999999999985 454 55677787
Q ss_pred HHHHHcC
Q 003020 816 AVLMKCG 822 (856)
Q Consensus 816 ~~~~~~G 822 (856)
.++.+.|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 7777655
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.00 E-value=1.7e-05 Score=70.15 Aligned_cols=89 Identities=12% Similarity=0.009 Sum_probs=65.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 003020 681 KVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSM----------VRQAEEIFEIMKKKGDANEFTYAMMLIMYKR 750 (856)
Q Consensus 681 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 750 (856)
+.+.+++|++.++...+... .+...|..+..++...++ +++|+..|+++++..|.+..+|+.++.+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 33445555555555555331 244455555555554443 5799999999999999999999999999988
Q ss_pred cC-----------CHHHHHHHHHHHHHcCCC
Q 003020 751 NG-----------RFEEATRIAKQMRESGLI 770 (856)
Q Consensus 751 ~g-----------~~~~A~~~~~~~~~~~~~ 770 (856)
.| ++++|++.|+++++.+|.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 75 899999999999999876
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.97 E-value=3.2e-05 Score=65.77 Aligned_cols=95 Identities=7% Similarity=-0.005 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 687 EAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 687 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
+|+..|+++.+... .+...+..++.+|...|++++|+..++++.+..|.+..+|..++.+|...|++++|+..++++++
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46777777777442 45677888888888999999999999999888888888999999999999999999999999887
Q ss_pred cCCC-CCHHHHHHHHHH
Q 003020 767 SGLI-SDLLSYNNVLGL 782 (856)
Q Consensus 767 ~~~~-p~~~~~~~l~~~ 782 (856)
..+. .+......+...
T Consensus 82 ~~~~~~~~~~~~~l~~~ 98 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVF 98 (115)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHH
Confidence 6543 233344444333
No 206
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=5.2e-05 Score=63.75 Aligned_cols=83 Identities=12% Similarity=0.002 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------H
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDD-------F 809 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-------~ 809 (856)
+...+..++..+...|++++|++.++++++..|. ++..|..++.+|...|++++|+..++++++. .|+. .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 4567889999999999999999999999999887 8999999999999999999999999999984 6664 3
Q ss_pred HHHHHHHHHHHcC
Q 003020 810 TFKSLGAVLMKCG 822 (856)
Q Consensus 810 ~~~~l~~~~~~~G 822 (856)
.+..+..++...|
T Consensus 80 ~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 80 LQYRLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.87 E-value=0.00048 Score=60.60 Aligned_cols=111 Identities=10% Similarity=0.018 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 003020 648 GNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE----RSMVRQA 723 (856)
Q Consensus 648 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 723 (856)
+++++|+.+|++..+.| .|... +...|...+.+++|+++|++..+. .+...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35677888888887776 34443 666777777778888888887775 355666777777777 7888888
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 003020 724 EEIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEEATRIAKQMRESG 768 (856)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 768 (856)
++.|++..+. .++.++..|+..|.. .+++++|++.|+++.+.|
T Consensus 81 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888888876 467778888888888 788899999999888876
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.78 E-value=9.6e-05 Score=60.87 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 003020 702 PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI-SDLLSYNNVL 780 (856)
Q Consensus 702 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~ 780 (856)
.+...+..++.+|...|++++|++.|+++.+..|.++.+|..++.+|...|++++|++.++++++..+. ++......+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 356677888888999999999999999999888888889999999999999999999999998876432 2444444444
Q ss_pred HHHHh
Q 003020 781 GLYAV 785 (856)
Q Consensus 781 ~~~~~ 785 (856)
..+..
T Consensus 85 ~~l~~ 89 (100)
T 3ma5_A 85 DAKLK 89 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.67 E-value=9.9e-05 Score=60.57 Aligned_cols=82 Identities=12% Similarity=0.106 Sum_probs=58.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDANEF-TYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGR 788 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 788 (856)
.+..+...|++++|++.++++.+..|.+.. .+..++.+|...|++++|++.|+++++..|. +...+.. +.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~--------~~ 76 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------HH
Confidence 455667778888888888888887777877 8888888888888888888888888888776 5444422 44
Q ss_pred HHHHHHHHHHHH
Q 003020 789 FKDVIGTFKDMV 800 (856)
Q Consensus 789 ~~~A~~~~~~~~ 800 (856)
+.++...|++..
T Consensus 77 ~~~a~~~~~~~~ 88 (99)
T 2kc7_A 77 VMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHHHh
Confidence 455555555443
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.61 E-value=0.00042 Score=55.69 Aligned_cols=68 Identities=10% Similarity=0.054 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 734 GDANEFTYAMMLIMYKRNGR---FEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 734 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
.|.++..+..++.++...++ .++|..+++++++.+|. ++.....++..+.+.|++++|+..|+++++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36677777777777765554 67888888888888877 7788888888888888888888888888774
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.54 E-value=0.00087 Score=68.20 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=72.9
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003020 732 KKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTF 811 (856)
Q Consensus 732 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 811 (856)
...|.++.++..++..+...|++++|+..+++++..+ |+...|..++.++.-.|++++|.+.|++++. +.|...||
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 3448899999999988888899999999999999997 5778888999999999999999999999998 48888887
Q ss_pred HHHHHHHHHcC
Q 003020 812 KSLGAVLMKCG 822 (856)
Q Consensus 812 ~~l~~~~~~~G 822 (856)
...-+....+.
T Consensus 347 ~~~~~l~F~sn 357 (372)
T 3ly7_A 347 YWIENGIFQTS 357 (372)
T ss_dssp HHHHHSSSCCC
T ss_pred HHHhCceeecc
Confidence 65544443333
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.52 E-value=0.00039 Score=74.09 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHhC-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCH---HHHHHHHH
Q 003020 718 SMVRQAEEIFEIMKKK-----GDANE---FTYAMMLIMYKRNGRFEEATRIAKQMRES-----GLISDL---LSYNNVLG 781 (856)
Q Consensus 718 g~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~---~~~~~l~~ 781 (856)
|++++|+.++++.++. ++.++ .+++.|+.+|..+|++++|+.+++++++. |+. .+ .++++|+.
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-SLNVASMWLKLGR 390 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHHHH
Confidence 4555555555554432 23333 35677777788888888888888777643 444 33 56888899
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 003020 782 LYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 782 ~~~~~g~~~~A~~~~~~~~~ 801 (856)
+|..+|++++|+.+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999888876
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.52 E-value=0.0013 Score=70.17 Aligned_cols=88 Identities=14% Similarity=0.026 Sum_probs=61.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC-----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCH---HHH
Q 003020 713 LYSERSMVRQAEEIFEIMKKKG-----DANE---FTYAMMLIMYKRNGRFEEATRIAKQMRES-----GLISDL---LSY 776 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~-----~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~---~~~ 776 (856)
.+...|++++|+++++++++.. +.++ .+++.|+.+|..+|++++|+.+++++++. |+. .+ .++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a~~l 374 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-HPVRGVQV 374 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-ChHHHHHH
Confidence 3445667777777777776542 3333 35677777788888888888888777643 433 33 467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 777 NNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 777 ~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+.|+.+|..+|++++|+.+++++++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8888888888888888888888766
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.50 E-value=0.00054 Score=59.79 Aligned_cols=93 Identities=11% Similarity=0.059 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 720 VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG---RFEEATRIAKQMRESG-LISDLLSYNNVLGLYAVDGRFKDVIGT 795 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 795 (856)
...+.+.|++....++++..+...+++++.+.+ +.++++.+++++.+.+ |.-...+++.++-+|.+.|++++|.++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456677777777777888888889999999888 5668999999988876 321457888888899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHH
Q 003020 796 FKDMVNAAIQPDDFTFKSL 814 (856)
Q Consensus 796 ~~~~~~~g~~p~~~~~~~l 814 (856)
++++++ +.|+..--..|
T Consensus 94 ~~~lL~--ieP~n~QA~~L 110 (152)
T 1pc2_A 94 VRGLLQ--TEPQNNQAKEL 110 (152)
T ss_dssp HHHHHH--HCTTCHHHHHH
T ss_pred HHHHHh--cCCCCHHHHHH
Confidence 999988 47876544443
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.35 E-value=0.00047 Score=73.46 Aligned_cols=85 Identities=13% Similarity=-0.007 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHhHHc-----CCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCC-Cc-ChhhHHHHHHH
Q 003020 172 SSWERALEIFEWFKRQ-----ECHELNV-IHYNIMLRTLGKARKWSYVQSLWDEMSV-----KGI-VP-INSTYGTLIDV 238 (856)
Q Consensus 172 ~~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~-~p-~~~~~~~l~~~ 238 (856)
|+|++|+.+++.++.. ++.+|++ .+++.+..+|..+|+|++|+.++++++. .|. .| ...+++.++..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4455555555544332 2223333 4455555555555555555555554432 111 11 12234444444
Q ss_pred HHcCCCHHHHHHHHHHHH
Q 003020 239 CSKGGLKEEAVCWLERMN 256 (856)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~ 256 (856)
|..+|++++|+.+|++++
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 444444444444444443
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.20 E-value=0.0018 Score=51.92 Aligned_cols=70 Identities=11% Similarity=-0.068 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 701 SPDVYTSNCMIDLYSERSM---VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 701 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
+++...+..+..++...++ .++|..+++++++.+|.++.++..++..+...|++++|+..|+++++..|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3566777777777765444 799999999999999999999999999999999999999999999998766
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.09 E-value=0.0037 Score=50.79 Aligned_cols=63 Identities=13% Similarity=0.257 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003020 743 MMLIMYKRNGRFEEATRIAKQMRESGLISDLL-SYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDD 808 (856)
Q Consensus 743 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 808 (856)
..+..+...|++++|++.++++++..|. ++. .|..++.+|...|++++|+..|+++++. .|+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 68 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDS 68 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc
Confidence 4677888999999999999999999887 888 9999999999999999999999999985 4543
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.08 E-value=0.0014 Score=69.97 Aligned_cols=88 Identities=9% Similarity=-0.074 Sum_probs=42.6
Q ss_pred HhcCCHHHHHHHHHHhHHc-----CCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCC-Cc-ChhhHHHH
Q 003020 169 KEQSSWERALEIFEWFKRQ-----ECHELNV-IHYNIMLRTLGKARKWSYVQSLWDEMSV-----KGI-VP-INSTYGTL 235 (856)
Q Consensus 169 ~~~~~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~-~p-~~~~~~~l 235 (856)
..+|++++|+..++.++.. ++.+|++ .+++.++.+|..+|+|++|+.++++++. .|. .| ...+++.+
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3455566666666555432 1122222 4555555555555666665555555443 111 11 12245555
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 003020 236 IDVCSKGGLKEEAVCWLERMN 256 (856)
Q Consensus 236 ~~~~~~~g~~~~A~~~~~~~~ 256 (856)
+..|..+|++++|+.+|++++
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHH
Confidence 555555555555555555544
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.99 E-value=0.0057 Score=62.23 Aligned_cols=74 Identities=7% Similarity=-0.109 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 701 SPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYN 777 (856)
Q Consensus 701 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 777 (856)
+.+...|..+...+...|++++|...+++++..+ ++...|..++..+.-.|++++|.+.|++++..+|. ..+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~--~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG--ANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS--HHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cChHH
Confidence 4567777777777777799999999999999887 57778888899999999999999999999998764 34443
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.98 E-value=0.0038 Score=60.68 Aligned_cols=90 Identities=10% Similarity=0.053 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHH
Q 003020 720 VRQAEEIFEIMKKKGDA--NEFTYAMMLIMYKRN-----GRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVD-GRFKD 791 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~ 791 (856)
...|..+++++++.+|. +...|..|+..|... |+.++|.+.|+++++.+|.-+..++..++..++.. |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45666667777766665 556777777777663 77777777777777776653466677777777663 77777
Q ss_pred HHHHHHHHHHcCCC--CCHH
Q 003020 792 VIGTFKDMVNAAIQ--PDDF 809 (856)
Q Consensus 792 A~~~~~~~~~~g~~--p~~~ 809 (856)
|.+.+++.+..... |+..
T Consensus 259 a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHcCCCCCCCChh
Confidence 77777777775444 4443
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.83 E-value=5.7e-05 Score=77.79 Aligned_cols=257 Identities=12% Similarity=0.143 Sum_probs=143.7
Q ss_pred HHHhhccccccHHHHhhHhhhhcChhHHHH---HHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003020 137 SMLQALDTVKDLDEALKPWAENLSNKERSI---ILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYV 213 (856)
Q Consensus 137 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~---~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 213 (856)
.++.+....+.+.+|+..|-+.-+|..+.. +..+.|++++-..++.-+++.. .++..=+.|+-+|++.++..+.
T Consensus 59 ~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk~~rL~el 135 (624)
T 3lvg_A 59 QLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAEL 135 (624)
T ss_dssp SHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHTSCSSSTT
T ss_pred HHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHhhCcHHHH
Confidence 667777777888888887766444432222 2223445555555554443321 1222234555566665554443
Q ss_pred HHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhh
Q 003020 214 QSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSR 293 (856)
Q Consensus 214 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 293 (856)
++.+ -.||..-...++.-|...|.|+.|.-+|..+.. |..|...+.+.|++..|...-++
T Consensus 136 Eefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaArK---- 195 (624)
T 3lvg_A 136 EEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK---- 195 (624)
T ss_dssp TSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTTT----
T ss_pred HHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHHh----
Confidence 3222 123444445555555555555555444443221 12222233344444444333222
Q ss_pred ccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHH
Q 003020 294 ESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLA 373 (856)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~ 373 (856)
. .++.||..+-.+|...+.+.-|.-.--.+.- .|| -...++..|...|.++
T Consensus 196 ---------------------A---ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ 246 (624)
T 3lvg_A 196 ---------------------A---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFE 246 (624)
T ss_dssp ---------------------C---CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCT
T ss_pred ---------------------c---CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHH
Confidence 2 2567999999999999998877555444432 222 3445677888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH-HcCCC------CCHHhHHHHHHHHHhcCCHHHHH
Q 003020 374 EVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMK-EANLE------PDIVSYRTLLYAYSIRRMVCEAE 446 (856)
Q Consensus 374 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~------~~~~~~~~ll~~~~~~g~~~~A~ 446 (856)
+.+.+++..+... ......|+-|.-.|+|-. .++-++-++... +.+++ -....|.-+...|....+++.|.
T Consensus 247 ELIsLlEaglglE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 247 ELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TSTTTHHHHTTST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhCCC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 9999999887432 456778888888888763 343333332211 11221 13456888888888888888765
Q ss_pred H
Q 003020 447 E 447 (856)
Q Consensus 447 ~ 447 (856)
.
T Consensus 325 l 325 (624)
T 3lvg_A 325 I 325 (624)
T ss_dssp H
T ss_pred H
Confidence 3
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.81 E-value=0.015 Score=47.74 Aligned_cols=62 Identities=10% Similarity=0.000 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKK-------GDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.|+..+...|+++.|...++.+.+. +.....++..|+.++.+.|++++|+..++++++..|.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 4444444444444444444444332 1223445555555555555555555555555555544
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.75 E-value=0.012 Score=48.38 Aligned_cols=72 Identities=7% Similarity=0.007 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRESG------LISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFT 810 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 810 (856)
++.-+..|+..+...|+++.|+..++++++.. ..+.+..+..++.+|.+.|++++|+.+++++++ +.|+...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHH
Confidence 55667889999999999999999999998752 112567899999999999999999999999998 4777644
No 224
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.64 E-value=1.5 Score=50.50 Aligned_cols=171 Identities=10% Similarity=0.073 Sum_probs=79.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHHcCCHH
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSN---CMIDLYSERSMVR 721 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~ 721 (856)
.-.|+.+-...++..+.+.. ..+..-...+.-++...|+.+.+..+.+.+.... .| ..-|. .+.-+|+..|+..
T Consensus 501 vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHH
T ss_pred cccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHH
Confidence 34455555555555555431 1111222222233335566666666666665421 12 12222 2233455666665
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 003020 722 QAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRF-KDVIGTFKDMV 800 (856)
Q Consensus 722 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 800 (856)
....++..+.+....+......++-++...|+.+.+.++++.+.+.+ .|....-..++-+....|.. .+|+.++..+.
T Consensus 578 aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 578 AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 55556666665433333333333334444555555555555444432 12222222233333333333 56667777765
Q ss_pred HcCCCCCHHHHHHHHHHHHHcC
Q 003020 801 NAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 801 ~~g~~p~~~~~~~l~~~~~~~G 822 (856)
. .+|..+-...+.++..-|
T Consensus 657 ~---D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 657 K---DPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp T---CSSHHHHHHHHHHHHHHS
T ss_pred c---CCCHHHHHHHHHHHHHHh
Confidence 4 556666555555555555
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.62 E-value=0.01 Score=49.70 Aligned_cols=98 Identities=10% Similarity=0.030 Sum_probs=72.3
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHH
Q 003020 715 SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEE---ATRIAKQMRESG-LISDLLSYNNVLGLYAVDGRFK 790 (856)
Q Consensus 715 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~ 790 (856)
........+.+.|.+....++++..+-..+++++.+..+... ++.+++.+.+.+ |.-.....+.++-++.+.|+|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 334445666777777766677888888888999988887666 888888887765 2213467788888999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 791 DVIGTFKDMVNAAIQPDDFTFKSL 814 (856)
Q Consensus 791 ~A~~~~~~~~~~g~~p~~~~~~~l 814 (856)
+|.+.++.+++ +.|+..--..|
T Consensus 92 ~A~~~~~~lL~--~eP~n~QA~~L 113 (126)
T 1nzn_A 92 KALKYVRGLLQ--TEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCHHHHHH
Confidence 99999999988 47765443333
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.62 E-value=0.016 Score=50.54 Aligned_cols=85 Identities=11% Similarity=0.055 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 685 LKEAQETYKLLRSLEASPDVYTSNCMIDLYSERS---MVRQAEEIFEIMKKKG-D-ANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 685 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
...+.+-|.+..+.+. ++..+...+..++++.+ +.++++.+++.+.+.. | .+...+..|+-+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3455566666555544 66777667777787777 6668888888888776 3 245677788888888888888888
Q ss_pred HHHHHHHcCCC
Q 003020 760 IAKQMRESGLI 770 (856)
Q Consensus 760 ~~~~~~~~~~~ 770 (856)
.++++++..|.
T Consensus 93 y~~~lL~ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhcCCC
Confidence 88888888775
No 227
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.48 E-value=1.9 Score=49.72 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=16.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH
Q 003020 394 YNILIFLHAKNDKISMASRYFWKMKE 419 (856)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~~~~~m~~ 419 (856)
|..++.++.+.++.+.+.++|.++.+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555666677777777776653
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.10 E-value=0.27 Score=57.61 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=55.5
Q ss_pred HccCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 003020 540 GMGRNYDKACN-LFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMA 618 (856)
Q Consensus 540 ~~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 618 (856)
...+++++|.+ ++..+ |+......++..+.+.|.++.|.++.+. .. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHH
Confidence 34667777765 44211 1122235566666677777776655421 11 112234556777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 619 EEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAME 661 (856)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (856)
.++.+.+ .+...|..+...+.+.|+++.|..+|.++.
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 7664332 356677777777777777777777776653
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.84 E-value=0.0005 Score=71.00 Aligned_cols=214 Identities=11% Similarity=0.116 Sum_probs=156.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003020 321 SYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFL 400 (856)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 400 (856)
+..|..|..+....+++.+|++.|-+. -|+..|..++.+..+.|.+++-...+....+. ..+...=+.|+.+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 457889999999999888887766432 36667888999999999999998888877654 3455566788999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcC--------------------CCCCC
Q 003020 401 HAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGG--------------------GLEID 460 (856)
Q Consensus 401 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------------------~~~p~ 460 (856)
|++.+++.+-.+++ . .|+..-...+..-|...|.++.|.-+|..+..- .-..+
T Consensus 126 yAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99998876543332 1 366666667777777777777777666554210 11246
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 003020 461 EYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYG 540 (856)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 540 (856)
+.||..+..+|...+.+.-|...--.+. ..++-...++..|...|.+++-+.+++............|+-|.-.|+
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniI----vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYs 274 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 274 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHH----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhc----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 7789999999999998877755544443 233344567888999999999999999999888888999999998888
Q ss_pred ccCCHHHHHHHHHH
Q 003020 541 MGRNYDKACNLFDS 554 (856)
Q Consensus 541 ~~g~~~~A~~~~~~ 554 (856)
+- ++++..+.++.
T Consensus 275 KY-~PeKlmEHlkl 287 (624)
T 3lvg_A 275 KF-KPQKMREHLEL 287 (624)
T ss_dssp SS-CTTHHHHHHTT
T ss_pred hc-CHHHHHHHHHH
Confidence 76 34544444443
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.78 E-value=0.05 Score=52.94 Aligned_cols=110 Identities=10% Similarity=-0.041 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcC-CCHH
Q 003020 173 SWERALEIFEWFKRQECHELNVIHYNIMLRTLGK-----ARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKG-GLKE 246 (856)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~ 246 (856)
....|...++++.+.++.-.+...|..++..|.+ .|+.++|+++|++.++.++.-+..++......++.. |+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4567899999999876333346789999999998 499999999999999976543588999999999885 9999
Q ss_pred HHHHHHHHHHhCCCC--ccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003020 247 EAVCWLERMNEGGME--PDEVTMGIVVQMYKKAGEFQKAEEFFKKW 290 (856)
Q Consensus 247 ~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 290 (856)
+|...+++++...+. |+....+.+ .-++|..+++++
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~ 295 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHh
Confidence 999999999998766 554444433 234555555443
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.66 E-value=0.19 Score=59.09 Aligned_cols=102 Identities=11% Similarity=0.004 Sum_probs=63.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 003020 325 NTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKN 404 (856)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 404 (856)
..++..+.+.|.+++|+++.+... . -.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~---------~---~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD---------Q---KFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH---------H---HHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc---------h---heehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 666777777888888876653211 1 122334568888887775442 3667888888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003020 405 DKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMD 453 (856)
Q Consensus 405 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 453 (856)
|+++.|.+.|.++.. |..+...+...|+.+...++-+...
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888877642 3344444555566555444444333
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.13 E-value=1.2 Score=37.19 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=80.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003020 610 MKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQ 689 (856)
Q Consensus 610 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 689 (856)
.-.|..++..++..+..+. .+..-+|.+|--....-+-+-..+.++.+-+. + |. ...|......
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--Di----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--Cc----------HhhhcHHHHH
Confidence 3346666666666666652 35555555555555544555555555544321 0 10 1234444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 690 ETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 690 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
..|-.+ ..+.......++.+..+|+-++-.+++..+....++++.....++.+|.+.|+..+|.+++.++-+.|.
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 443331 123344455666677777777777777776655677777777777777777777777777777777775
Q ss_pred C
Q 003020 770 I 770 (856)
Q Consensus 770 ~ 770 (856)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.85 Score=40.78 Aligned_cols=101 Identities=19% Similarity=0.212 Sum_probs=67.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003020 643 AFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQ 722 (856)
Q Consensus 643 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 722 (856)
...+.|+++.|.++.+++ .+...|..|++.....|+++-|.+.|++... +..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345678888888877654 3677888888888888888888888877543 3344555666777776
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003020 723 AEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQ 763 (856)
Q Consensus 723 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 763 (856)
-.++-+.....+. ++.....+...|+++++++++.+
T Consensus 79 L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666655554432 23334445567888888877654
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.85 Score=40.78 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=76.7
Q ss_pred HHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003020 273 MYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGI 352 (856)
Q Consensus 273 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 352 (856)
.....|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+..
T Consensus 14 LAL~lg~l~~A~e~a~~l~----------------------------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---- 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN----------------------------DSITWERLIQEALAQGNASLAEMIYQTQH---- 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC----------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTT----
T ss_pred HHHhcCCHHHHHHHHHHhC----------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHhC----
Confidence 3456778888888776653 35678888888888888888888887753
Q ss_pred CCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHH
Q 003020 353 VPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTL 432 (856)
Q Consensus 353 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 432 (856)
| +..+.-.|.-.|+.+...++-+.....| -++.....+.-.|+++++.++|.+.-. -|..
T Consensus 62 --D---~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------ 121 (177)
T 3mkq_B 62 --S---FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------ 121 (177)
T ss_dssp --C---HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------
T ss_pred --C---HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------
Confidence 2 3344444555677776666665555443 133444455567777777777754432 1111
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 003020 433 LYAYSIRRMVCEAEELISEM 452 (856)
Q Consensus 433 l~~~~~~g~~~~A~~~~~~~ 452 (856)
.......|..+.|.++.+++
T Consensus 122 ~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 122 YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHcCcHHHHHHHHHHh
Confidence 11112245566666666555
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.91 E-value=0.26 Score=42.21 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=43.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003020 716 ERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVL 780 (856)
Q Consensus 716 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 780 (856)
..++.++|.++|+.+.+....=..+|...+.--.++|+.+.|.+++.+++..++. +...+...+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~ 135 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIAL 135 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHH
Confidence 3467777888887776554333667777777777788888888888888888777 334444433
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.52 E-value=0.36 Score=40.32 Aligned_cols=90 Identities=9% Similarity=-0.003 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCCHHHH
Q 003020 683 GYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQ---AEEIFEIMKKKGDA--NEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 683 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 757 (856)
.....+.+-|......+. ++..+-..+..++.+..+... ++.+++.+...+.| .......|+-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 334445555555544343 555555566667766665544 77778777776522 344667778888888888888
Q ss_pred HHHHHHHHHcCCCCCHH
Q 003020 758 TRIAKQMRESGLISDLL 774 (856)
Q Consensus 758 ~~~~~~~~~~~~~p~~~ 774 (856)
.+.++.+++..|. +..
T Consensus 94 ~~~~~~lL~~eP~-n~Q 109 (126)
T 1nzn_A 94 LKYVRGLLQTEPQ-NNQ 109 (126)
T ss_dssp HHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHHHhCCC-CHH
Confidence 8888888888776 443
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.32 E-value=0.17 Score=57.00 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=41.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 745 LIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 745 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
+.-|...|+++-|+++.+++...-|. +..+|..|+.+|...|+|+.|+-.+.-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34455677888888888888887776 7788888888888888888888777665
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.26 E-value=0.38 Score=40.35 Aligned_cols=80 Identities=5% Similarity=-0.107 Sum_probs=60.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 733 KGDANEFTYAMMLIMYKRNGRF---EEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 733 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
.+.+++.+-..+++++.+..+. .+++.+++.+.+.++.-....+..++-++.+.|++++|.+..+.+++ +.|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 3567778888888888887754 46888888888776542457778888888899999999988888888 477765
Q ss_pred HHHHH
Q 003020 810 TFKSL 814 (856)
Q Consensus 810 ~~~~l 814 (856)
-...|
T Consensus 113 QA~~L 117 (134)
T 3o48_A 113 QVGAL 117 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.11 E-value=0.52 Score=40.43 Aligned_cols=61 Identities=7% Similarity=-0.047 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHH
Q 003020 475 GMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVM 535 (856)
Q Consensus 475 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 535 (856)
++.++|+++|+.+...+..-...|...+..-.++|++..|.+++..+....+.+...+.+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 4555555555555433332344444445555555555555555555555444444443333
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.04 E-value=1 Score=38.29 Aligned_cols=78 Identities=5% Similarity=-0.098 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003020 735 DANEFTYAMMLIMYKRNGRF---EEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTF 811 (856)
Q Consensus 735 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 811 (856)
.++..+-..+++++.+..+. .+++.+++.+...++.-.....+.++-++.+.|+|++|.++.+.+++ +.|+..--
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHH
Confidence 56777777888888877754 46788888888776653446777888888888888888888888888 47766444
Q ss_pred HHH
Q 003020 812 KSL 814 (856)
Q Consensus 812 ~~l 814 (856)
..|
T Consensus 114 ~~L 116 (144)
T 1y8m_A 114 GAL 116 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.32 E-value=5.4 Score=42.31 Aligned_cols=151 Identities=12% Similarity=0.074 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCH----H
Q 003020 672 YNSLIKLYTKVGYLKEAQETYKLLRS--LEASPD---VYTSNCMIDLYSERSMVRQAEEIFEIMKKKG---DANE----F 739 (856)
Q Consensus 672 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~ 739 (856)
...|...+...|++.+|..+++.+.. .+..+. ...+..-++.|...+++..|..+++++.... ++++ .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 34566777777888888777776654 222222 2355566677777788888877777764311 2222 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 740 TYAMMLIMYKRNGRFEEATRIAKQMRESG-LISDLLSY----NNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSL 814 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 814 (856)
.+..++..+...++|.+|-+.|.++.+.. ...|+..+ ..++.+..-.+..++--.+..+......-++...+..|
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 45566777777788888777777775431 11122222 22222222222222222233333222223455567777
Q ss_pred HHHHHHcC
Q 003020 815 GAVLMKCG 822 (856)
Q Consensus 815 ~~~~~~~G 822 (856)
+.+|...-
T Consensus 300 ~k~f~~~~ 307 (445)
T 4b4t_P 300 VKLFTTNE 307 (445)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhch
Confidence 77776554
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.11 E-value=3.4 Score=34.60 Aligned_cols=138 Identities=9% Similarity=0.038 Sum_probs=59.9
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCc
Q 003020 240 SKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSL 319 (856)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (856)
.-.|..++..++..+..... +..-+|-++--....-+-+-..++++.+.+.-++..-+++.+.+.-.-.. ..
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~-----n~ 89 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN-----NT 89 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT-----TC
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh-----cc
Confidence 34566666666666665532 33334444433333444444444444443322111111111111000000 01
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 003020 320 SSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELH 386 (856)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 386 (856)
+..-.+..++.+..+|+-++-.+++..++. +.+|++.....+..+|.+.|+..+|.+++.++-+.|
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 223344445555555555555555555433 234445555555555555555555555555555544
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.94 E-value=0.61 Score=48.73 Aligned_cols=74 Identities=11% Similarity=0.079 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHH
Q 003020 742 AMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN-----AAIQPDDFTFKSLGA 816 (856)
Q Consensus 742 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~l~~ 816 (856)
..++.++...|++++|+..+.++....|- +...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+-...-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34566677778888888888887777776 777788888888888888888888777654 477887776444433
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.33 E-value=0.64 Score=40.78 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 772 DLLSYNNVLGLYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 772 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 800 (856)
+...-..++.+|.+.|++++|+.+++.+.
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 34566779999999999999999988653
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.90 E-value=1.4 Score=46.06 Aligned_cols=77 Identities=8% Similarity=0.013 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCHHHHHHHHH
Q 003020 707 SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMR-----ESGLISDLLSYNNVLG 781 (856)
Q Consensus 707 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~l~~ 781 (856)
...++..+...|++++|+..+..+....|.+...|..++.++.+.|+..+|++.|+++. +.|+.|++.+-...-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34567778899999999999999999999999999999999999999999999999875 4688888766544433
Q ss_pred HH
Q 003020 782 LY 783 (856)
Q Consensus 782 ~~ 783 (856)
.+
T Consensus 254 il 255 (388)
T 2ff4_A 254 IL 255 (388)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.02 E-value=22 Score=37.65 Aligned_cols=96 Identities=10% Similarity=0.191 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCH--
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKG--DAN----EFTYAMMLIMYKRNGRFEEATRIAKQMRE----SGLISDL-- 773 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~-- 773 (856)
....|...+...|++.+|..++..+.... ..+ ...+...++.|...+++..|..+++++.. ..+.|+.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 34567889999999999999999886422 222 34677788899999999999999998753 2222222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 774 LSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 774 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
..+...+..+...++|.+|...|.++.+
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4567788899999999999999988866
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.83 E-value=5.5 Score=45.00 Aligned_cols=49 Identities=8% Similarity=-0.061 Sum_probs=26.5
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003020 715 SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQ 763 (856)
Q Consensus 715 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 763 (856)
...|+++-|+++.+++....|.+..+|..|+.+|...|+++.|+-.++-
T Consensus 348 l~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 3445555555555555555555555555555555555555555555443
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.16 E-value=13 Score=45.10 Aligned_cols=184 Identities=11% Similarity=0.055 Sum_probs=113.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003020 639 VLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERS 718 (856)
Q Consensus 639 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 718 (856)
.++..+...+.++-+.++..- .+.++..--.++.++...|++++|.+.|++... ++..+.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~ 880 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------A 880 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------S
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------h
Confidence 355556666666666554322 233444445566777777788888777766432 121111000 0
Q ss_pred CHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHH
Q 003020 719 MVRQAEEIFEIMKKKG---DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDL----LSYNNVLGLYAVDGRFKD 791 (856)
Q Consensus 719 ~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~ 791 (856)
.... +..+.... ..-+.-|..++..+.+.|.++.++++.+.+++.....+. ..|..+.+.+...|+|++
T Consensus 881 ~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 0000 11111111 223456788888999999999999999998876543233 257888899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-HHHHHhhcchhhHHHHHHHHhh
Q 003020 792 VIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG-LELTRKKNAQSGLQAWMSTLSS 844 (856)
Q Consensus 792 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~~ 844 (856)
|...+-.+.+...+ ...+..|+..++..| .+.+...++..-.+.--++|.+
T Consensus 957 Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~ 1008 (1139)
T 4fhn_B 957 AHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLER 1008 (1139)
T ss_dssp GGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHH
Confidence 99999888775443 456888888888888 6666666655444444444443
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.63 E-value=26 Score=34.61 Aligned_cols=27 Identities=26% Similarity=0.063 Sum_probs=17.3
Q ss_pred CCchhhHHHHHHHhhcCCHHHHHHHHH
Q 003020 493 MSSEGYSANIDGYGERGHVLEAERAFI 519 (856)
Q Consensus 493 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 519 (856)
.+++....++..|.+.|++.+|+.-|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 345556666667777777777766654
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.49 E-value=8 Score=32.42 Aligned_cols=70 Identities=11% Similarity=0.033 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 701 SPDVYTSNCMIDLYSERSM---VRQAEEIFEIMKKKGDA-NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 701 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+|. ....+..|+-++.+.|++++|.+..+.+++..|.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3555555555556655543 44677777777766543 3446667777778888888888888888777665
No 251
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.91 E-value=46 Score=36.72 Aligned_cols=136 Identities=10% Similarity=0.015 Sum_probs=69.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 003020 332 GKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMAS 411 (856)
Q Consensus 332 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 411 (856)
.+.|+++.+..+...+... .-.....|..+...+ .....+++...+.+.. +.+.....-+..+..+.+.+++...+
T Consensus 17 ~~~~~~~~~~~l~~~l~~~-pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~~~~~w~~~l 92 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDY-PLYPYLEYRQITDDL-MNQPAVTVTNFVRANP--TLPPARTLQSRFVNELARREDWRGLL 92 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTS-TTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHhhcCC-CcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHHhCCCHHHHH
Confidence 3567777777766655322 111222444333222 1224555555554422 11222233344456666777777666
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCCh
Q 003020 412 RYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGML 477 (856)
Q Consensus 412 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 477 (856)
..+.. .+.+...-.....+....|+..+|......+=..|.. .+.....++..+.+.|.+
T Consensus 93 ~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 93 AFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCS
T ss_pred HhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCC
Confidence 54432 2334444455666777788887777777776554422 344445556666655544
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.57 E-value=35 Score=35.07 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh--CCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRS--LEASPD---VYTSNCMIDLYSERSMVRQAEEIFEIMK 731 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 731 (856)
-++..|...|++.+|.+++..+.+ ...... ...+..-+..|...+++.++...+..+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555555555555555554444 111111 1123333444555555555555554443
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.47 E-value=4.4 Score=35.56 Aligned_cols=129 Identities=9% Similarity=-0.063 Sum_probs=70.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHH-HHHH
Q 003020 640 LINAFADVGNVKQAQSYFDAMESA-GLPPN-------AVIYNSLIKLYTKVGYLKEAQETYKLLRSL-EASPDVY-TSNC 709 (856)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~-~~~~ 709 (856)
-+..+...|.++.|.-+.+.+... +..|+ ..++..+++++...|++.+|...|++.++. ..-+... ....
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 345566778888888777765431 11233 135667778888888888888888876551 1111111 1111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGL 782 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 782 (856)
+. ....... . . ..+.+...-.-+..+|.+.|++++|+.+++.+-...- ++..--.|++.
T Consensus 106 ~~----~~ss~p~------s-~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R--t~kvnm~LakL 164 (167)
T 3ffl_A 106 TG----NSASTPQ------S-Q-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR--TPKINMLLANL 164 (167)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC--CHHHHHHHHHH
T ss_pred cc----ccCCCcc------c-c-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc--CHHHHHHHHHH
Confidence 10 0000000 0 0 0133455667789999999999999999886533221 34444444443
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.97 E-value=36 Score=33.89 Aligned_cols=82 Identities=13% Similarity=0.075 Sum_probs=45.8
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 003020 526 KLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAV 605 (856)
Q Consensus 526 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 605 (856)
..++.....+...|.+.+++.+|...|- .|-.+...++..++--+...+...++ +...-.+
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRa- 193 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARA- 193 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHH-
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHH-
Confidence 4457777778888888888888877762 13333345665555544444332221 1111222
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 003020 606 ISSYMKLGQLEMAEEVYKDMI 626 (856)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~ 626 (856)
+-.|.-.++...|..+|+...
T Consensus 194 VL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 194 VLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 223555677787777666554
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.80 E-value=6.6 Score=37.59 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=35.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 644 FADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
..+.|+.++|++....-++.. |.|...-..++..+|-.|++++|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445666777777666666654 55666666667777777777777776666665
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.79 E-value=3.7 Score=39.33 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=62.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHcCCH
Q 003020 678 LYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEF---TYAMMLIMYKRNGRF 754 (856)
Q Consensus 678 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~ 754 (856)
...+.|.+++|++....-++..+ -|...-..++..+|-.|+++.|..-++.+.+..|.... .|..++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI--------- 75 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV--------- 75 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH---------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH---------
Confidence 34566777777777766655432 45555566777777777777777777777766544332 222222
Q ss_pred HHHHHHHHHHHHcCCCC----CHHHH-HHHHHHH--HhcCCHHHHHHHHHHHHH
Q 003020 755 EEATRIAKQMRESGLIS----DLLSY-NNVLGLY--AVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 755 ~~A~~~~~~~~~~~~~p----~~~~~-~~l~~~~--~~~g~~~~A~~~~~~~~~ 801 (856)
.|+..-.++..-+-.| .+..| ..++.++ ...|+.++|..+..++.+
T Consensus 76 -~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 76 -KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp -HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 2223333333322221 12223 3333333 355788888877777766
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.39 E-value=12 Score=39.51 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSL--EASPDVYTSNCMIDLYSERSMVRQAEEIFEIMK 731 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 731 (856)
+...+++.|.+.|++++|.+.|.++... +...-...+-..++.+...+++..+...++++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556667777777777777777776652 222223455555666666666666666666554
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.88 E-value=30 Score=41.90 Aligned_cols=51 Identities=20% Similarity=0.094 Sum_probs=25.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 570 LIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDM 625 (856)
Q Consensus 570 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (856)
++..+...+.++.+.++... .+.++...-.+..+|...|++++|...|.+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44445555555555443322 1223333344555566666666666666554
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.13 E-value=13 Score=29.13 Aligned_cols=78 Identities=18% Similarity=0.130 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHH
Q 003020 173 SWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWL 252 (856)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 252 (856)
+.++|..+-+|....+. ...+--.-+..+..+|+|++|..+.+.. +.||...|..+- -.+.|..+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHH
Confidence 78999999999997652 2233333345677899999999887543 478998887764 45778899999998
Q ss_pred HHHHhCC
Q 003020 253 ERMNEGG 259 (856)
Q Consensus 253 ~~~~~~~ 259 (856)
.++-..|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 8887776
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.95 E-value=58 Score=33.48 Aligned_cols=220 Identities=14% Similarity=0.070 Sum_probs=107.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCC-----hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHH---
Q 003020 569 SLIQILAGADLPHMAKRYLRKMQEAGLVSD-----CIPYCAVISSYMKLGQLEMAEEVYKDMIRFN--VEPDVVVYG--- 638 (856)
Q Consensus 569 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~--- 638 (856)
.++..|...|++.+|.+++..+.+.=-..| ..++..-+..|...+++.++...+....... +.+++..-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466677777777777777777665311112 1235555667778888888888887775321 223332221
Q ss_pred -HHHHHHH-hcCCHHHHHHHHHHHHH----CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHH-H-HHhCCCCCCHHHH
Q 003020 639 -VLINAFA-DVGNVKQAQSYFDAMES----AGLPP---NAVIYNSLIKLYTKVGYLKEAQETYK-L-LRSLEASPDVYTS 707 (856)
Q Consensus 639 -~l~~~~~-~~g~~~~A~~~~~~~~~----~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~-~-~~~~~~~p~~~~~ 707 (856)
.-+..+. ..+++.+|...|-+..+ .+ .| +...|..+... -.++..+-..+.. . .... ..|....+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~aL--l~~~r~el~~~l~~~~~~~~-~~pei~~l 259 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLCKI--MLGQSDDVNQLVSGKLAITY-SGRDIDAM 259 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHH--HTTCGGGHHHHHHSHHHHTT-CSHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHH--HcCCHHHHHHHhcccccccc-CCccHHHH
Confidence 1222345 67888888877766532 11 11 11223222222 2233223222221 1 1111 23555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003020 708 NCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDG 787 (856)
Q Consensus 708 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 787 (856)
..++.++ ..+++.+...+++.....-..|+.....+-..+.+. -...+.++.+ |- ...++..++..+.-
T Consensus 260 ~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~I-----r~~~L~~i~~--pY-srIsl~~iA~~l~l-- 328 (394)
T 3txn_A 260 KSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTM-----LEQNLCRIIE--PY-SRVQVAHVAESIQL-- 328 (394)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHH-----HHHHHHHHHT--TC-SEEEHHHHHHHHTC--
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH-----HHHHHHHHhH--hh-ceeeHHHHHHHHCc--
Confidence 5555554 456777766666655433344554322111111100 0111122221 11 33455556555432
Q ss_pred CHHHHHHHHHHHHHcC
Q 003020 788 RFKDVIGTFKDMVNAA 803 (856)
Q Consensus 788 ~~~~A~~~~~~~~~~g 803 (856)
..+++...+-+|+..|
T Consensus 329 s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 329 PMPQVEKKLSQMILDK 344 (394)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 5678888888888765
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.60 E-value=30 Score=29.41 Aligned_cols=69 Identities=12% Similarity=0.027 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 702 PDVYTSNCMIDLYSERSM---VRQAEEIFEIMKKKGDAN-EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 702 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
|+..+--.+..++.+..+ ..+++.+++.+....|.+ ......|+-++.+.|++++|.++.+.+++..|.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 444433344444444332 334555555555544322 234445555555666666666666666655544
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.36 E-value=12 Score=29.17 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHH
Q 003020 173 SWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWL 252 (856)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 252 (856)
+.++|..+-+|....+. ...+--.-+..+..+|+|++|..+.+. -+.||...|..+- -.+.|..+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~----~c~pdlepw~ALc--e~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHG----NPWPALEPWFALC--EWHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTT----CCCGGGHHHHHHH--HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCC----CCCchHHHHHHHH--HHhcccHHHHHHHH
Confidence 78999999999997652 223333334567789999999987754 3578998887764 45789999999999
Q ss_pred HHHHhCC
Q 003020 253 ERMNEGG 259 (856)
Q Consensus 253 ~~~~~~~ 259 (856)
.++-..|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 8887776
No 263
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.11 E-value=9.1 Score=30.14 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003020 690 ETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKK 733 (856)
Q Consensus 690 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 733 (856)
+.++.+...+.-|++....+.+.+|.+.+++.-|+++++.+..+
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444433
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.61 E-value=18 Score=38.05 Aligned_cols=98 Identities=12% Similarity=0.021 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHH----
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESA--GLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL-EASPDVYTSN---- 708 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~---- 708 (856)
+...+...|.+.|++++|.+.|.++... +...-...+-.+++.+...+++..+...++++... .-.++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 6677889999999999999999999764 32334567888899999999999999999887651 1123322211
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKK 733 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~ 733 (856)
.-+..+...+++.+|...|-++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122234567777777766655443
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.70 E-value=43 Score=30.41 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 751 NGRFEEATRIAKQMRESGLIS-DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 751 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
.++..++..+|..|...++.. -+..|...+..+...|++.+|.++|+.-++.+-+|-..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 344667777777776665543 33556667777777777777777777777766666443
No 266
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=73.60 E-value=22 Score=28.00 Aligned_cols=50 Identities=10% Similarity=-0.040 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 003020 442 VCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAG 491 (856)
Q Consensus 442 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 491 (856)
.-+..+-++.+...++.|++....+.+++|.+.+++..|..+++.+..+.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 33445555555555556666666666666666666666666665555443
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.20 E-value=31 Score=27.03 Aligned_cols=78 Identities=15% Similarity=0.101 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003020 579 LPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFD 658 (856)
Q Consensus 579 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 658 (856)
..++|..+-+.+...+. ...+-.+-+..+.+.|++++|..+.+.. ..||...|.++.. .+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34455555544444432 1112222233455666666666665544 3566666655532 35555666666555
Q ss_pred HHHHCC
Q 003020 659 AMESAG 664 (856)
Q Consensus 659 ~~~~~~ 664 (856)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555554
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.80 E-value=27 Score=31.74 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003020 717 RSMVRQAEEIFEIMKKKG--DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS 771 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 771 (856)
.+...++.++|..|...+ ..-+..|...+..+...|++.+|.++|+..++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344667777777777665 4556667777777777888888888888887776665
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=70.55 E-value=23 Score=30.56 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCCcCh-hhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHH
Q 003020 211 SYVQSLWDEMSVKGIVPIN-STYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEV 265 (856)
Q Consensus 211 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 265 (856)
.++..+|..|..+|+-... .-|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 3377788888777665333 356777777778888888888888888777666543
No 270
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=70.49 E-value=61 Score=35.94 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=25.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHH
Q 003020 196 HYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCS 240 (856)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 240 (856)
+| .+|-.+.|+|.+++|.++..+.... +.-....+...+..|.
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC-
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHH
Confidence 56 5667788999999999888664321 1111235555666665
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=69.84 E-value=92 Score=31.00 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-H
Q 003020 701 SPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA-NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYN-N 778 (856)
Q Consensus 701 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~ 778 (856)
.-|+.....+...|.+.+++.+|...|- . +.. .+..+..++.-+...+... +...|. -
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~----------------e~dlfiaR 192 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESH----------------TAPLYCAR 192 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGG----------------GHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCc----------------cHHHHHHH
Confidence 3466666778888888888888887772 2 322 2355555554444433211 222221 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 003020 779 VLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 779 l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
.+--|.-.|+...|..+++...+
T Consensus 193 aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 193 AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 22345667788888887766654
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=68.52 E-value=30 Score=27.10 Aligned_cols=78 Identities=14% Similarity=0.015 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003020 579 LPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFD 658 (856)
Q Consensus 579 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 658 (856)
..++|..+-+.+...+. ...+-.+-+..+.+.|++++|..+.+.. ..||...|.++. -.+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 34455555444444332 1111222233455666666666555443 356666665553 235566666666665
Q ss_pred HHHHCC
Q 003020 659 AMESAG 664 (856)
Q Consensus 659 ~~~~~~ 664 (856)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555554
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=68.50 E-value=95 Score=30.62 Aligned_cols=167 Identities=15% Similarity=0.161 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHH--
Q 003020 266 TMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASET-- 343 (856)
Q Consensus 266 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-- 343 (856)
.|.++..-|.+++++++|.+++..- ...+.+.|+...|.++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-------------------------------------a~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-------------------------------------ALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-------------------------------------HHHHHHCCCcchHHHHHH
Confidence 4445555677778888888776542 2234456666665554
Q ss_pred --HHHHHHCCCCCCHHhHHHHHHHHhcCCCHH-HHHHHHHHHHh----CC--CCCCHHHHHHHHHHHHccCChHHHHHHH
Q 003020 344 --FAQMLREGIVPTTVTFNTMIHIYGNNDQLA-EVDSLIKKMEE----LH--CPPDTRTYNILIFLHAKNDKISMASRYF 414 (856)
Q Consensus 344 --~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~-~A~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 414 (856)
.+-..+.+++++......++..+.....-+ .-.++++++++ .| ..-+......+...|.+.|++.+|..-|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 444455677888877777777776533221 12233333332 22 1236667777778888888888877766
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 003020 415 WKMKEANLEPDIVSYRTLLYAYSIR---RMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFH 488 (856)
Q Consensus 415 ~~m~~~~~~~~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 488 (856)
-. |-.-+...+..++.-+... |...++--.+. ..+-.|.-.++...|...++.+.
T Consensus 158 i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~---------------RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 158 ML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS---------------RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH---------------HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred Hh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHH---------------HHHHHHHHhcCHHHHHHHHHHHH
Confidence 31 1111345555555544444 44333221111 12233456677777777766554
No 274
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=66.30 E-value=1.6e+02 Score=32.41 Aligned_cols=387 Identities=8% Similarity=-0.021 Sum_probs=177.4
Q ss_pred cCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHhcCCHHHH
Q 003020 368 NNDQLAEVDSLIKKMEELHCPP-DTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIV-SYRTLLYAYSIRRMVCEA 445 (856)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~A 445 (856)
+.|+++.+..+...+... +. ....|..+.... .....++....+++-.. .|-.. .-+..+..+.+.+++...
T Consensus 18 ~~~~~~~~~~l~~~l~~~--pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~---~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 18 DNRQMDVVEQMMPGLKDY--PLYPYLEYRQITDDL-MNQPAVTVTNFVRANPT---LPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HTTCHHHHHHHSGGGTTS--TTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HCCCHHHHHHHHHhhcCC--CcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHhCCCHHHH
Confidence 457777777666555321 21 112333322211 12234444443333211 12221 223345566677887777
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCH--------------
Q 003020 446 EELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHV-------------- 511 (856)
Q Consensus 446 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------- 511 (856)
+.++.. .+.+...-.....+....|+..+|....+.+=..+...++.-..+...+.+.|..
T Consensus 92 l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~ 166 (618)
T 1qsa_A 92 LAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMK 166 (618)
T ss_dssp HHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 665432 2335555556677777888887777766666555555555555555554443332
Q ss_pred ----HHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHcCCChHHHH
Q 003020 512 ----LEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCS---YNSLIQILAGADLPHMAK 584 (856)
Q Consensus 512 ----~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~A~ 584 (856)
..|..+...+. +........++..+..-. .+...... +.++... +...+.-+.+ .+++.|.
T Consensus 167 ~~~~~~a~~l~~~l~---~~~~~~a~~~~al~~~p~---~~~~~~~~-----~~~~~~~~~~~~~~~~rlar-~d~~~A~ 234 (618)
T 1qsa_A 167 AGNTGLVTVLAGQMP---ADYQTIASAIISLANNPN---TVLTFART-----TGATDFTRQMAAVAFASVAR-QDAENAR 234 (618)
T ss_dssp TTCHHHHHHHHHTCC---GGGHHHHHHHHHHHHCGG---GHHHHHHH-----SCCCHHHHHHHHHHHHHHHH-HCHHHHH
T ss_pred CCCHHHHHHHHHhCC---HHHHHHHHHHHHHHhChH---hHHHHHhc-----cCCChhhHHHHHHHHHHHHh-cCHHHHH
Confidence 22222221110 001111222222222111 11111111 1222221 1111222222 3667777
Q ss_pred HHHHHHHHcCCCCChHhHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 585 RYLRKMQEAGLVSDCIPYCAVIS----SYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAM 660 (856)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 660 (856)
..+....+.. ..+......+-. .....+...++...+...... ..+.......+....+.|+++.|...|+.|
T Consensus 235 ~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l 311 (618)
T 1qsa_A 235 LMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARL 311 (618)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 7777765443 223222222222 222233244555666655443 233333333444445667888888888777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCH
Q 003020 661 ESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD--ANE 738 (856)
Q Consensus 661 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~ 738 (856)
.... .......--+..++...|+.++|..+|+.+.+. .+ -|..+. ..+.|..-. . ......+ ...
T Consensus 312 ~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lA--a~~Lg~~~~-~----~~~~~~~~~~~~ 378 (618)
T 1qsa_A 312 PMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA--AQRIGEEYE-L----KIDKAPQNVDSA 378 (618)
T ss_dssp CTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH--HHHTTCCCC-C----CCCCCCSCCCCH
T ss_pred cccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHH--HHHcCCCCC-C----CCCCCChhHHhh
Confidence 5432 123444455666777778888888888777641 22 132221 122221000 0 0000000 001
Q ss_pred H---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003020 739 F---TYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTF 796 (856)
Q Consensus 739 ~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 796 (856)
. .-...+..+...|....|...+..+.+. .++.....++......|.++.++...
T Consensus 379 ~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 379 LTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 0 1123345567788888888888877654 24444445555556667776665443
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=64.67 E-value=43 Score=28.00 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003020 690 ETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG 734 (856)
Q Consensus 690 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 734 (856)
+-++.+...++-|++......+.+|.+.+++.-|+++++-+..+-
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 333444444455555555555555555555555555555555443
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=63.24 E-value=77 Score=27.71 Aligned_cols=59 Identities=12% Similarity=0.163 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003020 755 EEATRIAKQMRESGLISD-LLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKS 813 (856)
Q Consensus 755 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 813 (856)
+++..+|+.|...++-.. +..|...+..+...|++.+|.++|+.-++.+-+|-...-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~ 136 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQ 136 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 346778888887766533 46677888888888999999999999888887886554333
No 277
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=60.98 E-value=48 Score=27.77 Aligned_cols=47 Identities=9% Similarity=-0.062 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 003020 445 AEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAG 491 (856)
Q Consensus 445 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 491 (856)
..+-++.+...++.|++....+.+++|.+.+++..|..+++.+..+.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 34444444444555555555555555555555555555555554333
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.83 E-value=48 Score=28.60 Aligned_cols=51 Identities=10% Similarity=0.178 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003020 757 ATRIAKQMRESGLIS-DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD 807 (856)
Q Consensus 757 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 807 (856)
+..+|+.|...++-. -+..|...+..+...|++.+|.++|+.-++.+-+|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 455555555444332 223445555555555555555555555555554553
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.62 E-value=28 Score=30.48 Aligned_cols=54 Identities=13% Similarity=0.004 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCCcCh-hhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHH
Q 003020 212 YVQSLWDEMSVKGIVPIN-STYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEV 265 (856)
Q Consensus 212 ~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 265 (856)
.+..+|..|..+|+-... .-|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 366778888877765433 356777777888888888888888888887777654
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=56.35 E-value=45 Score=30.89 Aligned_cols=54 Identities=13% Similarity=0.020 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCCcCh-hhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccH
Q 003020 211 SYVQSLWDEMSVKGIVPIN-STYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDE 264 (856)
Q Consensus 211 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 264 (856)
+++..+|..|...|+--.. .-|......+...|++.+|..+|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4666777777777665333 34667777777778888888888887777666644
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.50 E-value=1.4e+02 Score=26.90 Aligned_cols=77 Identities=12% Similarity=0.004 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003020 736 ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLG 815 (856)
Q Consensus 736 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 815 (856)
+++.+-...+.++...|.. ++...+.++++ .+++..-...+.++.+.|. .++...+.++++ .++...-....
T Consensus 124 ~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~ 195 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE---TGTGFARKVAV 195 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHH
Confidence 3444444444555444442 23333333332 1344444444555555544 445555555554 23444444444
Q ss_pred HHHHH
Q 003020 816 AVLMK 820 (856)
Q Consensus 816 ~~~~~ 820 (856)
.++.+
T Consensus 196 ~aL~~ 200 (211)
T 3ltm_A 196 NYLET 200 (211)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 44433
No 282
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.48 E-value=81 Score=29.19 Aligned_cols=54 Identities=9% Similarity=0.151 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003020 755 EEATRIAKQMRESGLIS-DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDD 808 (856)
Q Consensus 755 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 808 (856)
+++..+|..|...++.- -+..|...+..+...|++.+|..+|+.-++.+-+|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 46667777777776553 3356777777788888888888888888887777743
No 283
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=46.36 E-value=3.4e+02 Score=30.02 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=38.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh--
Q 003020 534 VMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMK-- 611 (856)
Q Consensus 534 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 611 (856)
....++.-.|+++.|++.+-.. ...+.+.+...+. ..|-+... ..+..........-+..|+..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~---~~gLL~~~----~~lls~~~~~~~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLA---SLKLFKID----SSTRLTKKPKRDIRFANILANYTKSF 367 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHH---HTTC---------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHH---HcCCccCC----CcccccCCCcccccHHHHHHHHHHHh
Confidence 3556666778888888877643 1223333333332 23322221 111111000012225666766664
Q ss_pred -cCCHHHHHHHHHHH
Q 003020 612 -LGQLEMAEEVYKDM 625 (856)
Q Consensus 612 -~g~~~~A~~~~~~~ 625 (856)
..++.+|++.|--+
T Consensus 368 ~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTCHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHH
Confidence 46788888877666
No 284
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=45.92 E-value=1.1e+02 Score=32.53 Aligned_cols=79 Identities=13% Similarity=0.019 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV 785 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 785 (856)
...+|++...-...++.|...|.++....|.+...|+.|+-.....|+.-+|.-.|-+.+... .|-+.+..++...+.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Confidence 344566666667788999999999999999999999999999999999999999998888764 4688889988887764
No 285
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=40.77 E-value=1.9e+02 Score=26.07 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=29.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCC
Q 003020 612 LGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGN-----VKQAQSYFDAMESAGLPP 667 (856)
Q Consensus 612 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~p 667 (856)
-.+.+.|+-.+.+|++.| .|....-..++.+.-..|. ...|...++.....|.|-
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 356777777777777776 5555555555555554443 223444444444555443
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=39.19 E-value=1.7e+02 Score=24.35 Aligned_cols=65 Identities=12% Similarity=0.308 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCC--HHHHHHH
Q 003020 266 TMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQ--LKEASET 343 (856)
Q Consensus 266 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~ 343 (856)
....++.-|...|+.++|...++++.. +......+...+..++-+.+. .+.+..+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~-----------------------p~f~~e~V~~~i~~alE~~~~~~~e~~~~L 65 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEV-----------------------PHFHHELVYEAIVMVLESTGESAFKMILDL 65 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-----------------------GGGHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC-----------------------CccHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 345677778888888888888888741 111223445555555555432 3556677
Q ss_pred HHHHHHCCCC
Q 003020 344 FAQMLREGIV 353 (856)
Q Consensus 344 ~~~~~~~g~~ 353 (856)
+..+...|+-
T Consensus 66 L~~L~~~~~i 75 (129)
T 2nsz_A 66 LKSLWKSSTI 75 (129)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHHCCCc
Confidence 7777766554
No 287
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=39.18 E-value=1.4e+02 Score=31.87 Aligned_cols=80 Identities=9% Similarity=-0.108 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR 750 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 750 (856)
++..|++.......++.|..+|.++....+ .+...||.|+-.....|+.-+|.-.|-+.+....|-+.+..+|...+.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P-~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCC-CCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 555667777777889999999999988432 3456889998888889999999998888887778888899998888765
Q ss_pred c
Q 003020 751 N 751 (856)
Q Consensus 751 ~ 751 (856)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 4
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=36.13 E-value=91 Score=29.75 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=9.4
Q ss_pred HHHHHHccCCHHHHHHHH
Q 003020 200 MLRTLGKARKWSYVQSLW 217 (856)
Q Consensus 200 li~~~~~~g~~~~A~~~~ 217 (856)
.+....+.|+.+....++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344445566665554444
No 289
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.55 E-value=1.3e+02 Score=25.89 Aligned_cols=65 Identities=12% Similarity=0.308 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCC--HHHHHHH
Q 003020 266 TMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQ--LKEASET 343 (856)
Q Consensus 266 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~ 343 (856)
....++.-|...|+.++|...++++.. +......+...+..++-+.++ .+.+..+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~-----------------------p~f~~e~V~~~i~~alE~~~~~~re~~~~L 67 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV-----------------------PHFHHELVYEAIVMVLESTGESAFKMILDL 67 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-----------------------GGGHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC-----------------------CcchHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 345677778888888888888887741 111223444555555544322 3456667
Q ss_pred HHHHHHCCCC
Q 003020 344 FAQMLREGIV 353 (856)
Q Consensus 344 ~~~~~~~g~~ 353 (856)
+..+...|+-
T Consensus 68 L~~L~~~~~i 77 (152)
T 2ion_A 68 LKSLWKSSTI 77 (152)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHHCCCc
Confidence 7777666544
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.21 E-value=2.8e+02 Score=29.56 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-SPDV--YTS-NCMIDLYSERSMVRQAEEIFEIMKKKGDAN 737 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 737 (856)
...++.+++.|...+.++.|..+..+..-... .++. ..| -.++..+.-.++|.+|.+.+..+.+..|++
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 46788888888888888888888877642100 1111 222 234566777888888888888888766544
No 291
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=33.67 E-value=3.8e+02 Score=26.91 Aligned_cols=26 Identities=4% Similarity=0.070 Sum_probs=19.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 003020 196 HYNIMLRTLGKARKWSYVQSLWDEMS 221 (856)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~~~ 221 (856)
....+|.-|...++..+|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 34567778888888888888887754
No 292
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.17 E-value=1.9e+02 Score=26.01 Aligned_cols=37 Identities=24% Similarity=0.175 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003020 612 LGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVG 648 (856)
Q Consensus 612 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 648 (856)
-.+.+.|+-.+.+|++.|..|....-..++.+.-..|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3567777777777777665555555555554444444
No 293
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.10 E-value=3.6e+02 Score=31.58 Aligned_cols=49 Identities=8% Similarity=-0.073 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcC
Q 003020 774 LSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF----TFKSLGAVLMKCG 822 (856)
Q Consensus 774 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~G 822 (856)
.-|.+++..+.+.|-++.++++-+.+++.--.-|.. .|..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 467889999999999999999999999842122222 3566666655554
No 294
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=32.32 E-value=2.4e+02 Score=25.70 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCC
Q 003020 612 LGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGN-----VKQAQSYFDAMESAGLP 666 (856)
Q Consensus 612 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~ 666 (856)
-.+.+.|+-.+.+|++.|..|....-..++.+.-..|. ...|...++.....|.|
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35677777777777776655555555555555544443 22344444444445543
No 295
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=30.28 E-value=3e+02 Score=24.64 Aligned_cols=163 Identities=12% Similarity=0.009 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003020 668 NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM 747 (856)
Q Consensus 668 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 747 (856)
+...-...+..+...|.. ++...+..+.. .++...-...+.++...+.. ++...+..+. ..+++.+-...+.+
T Consensus 32 ~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l--~~~~~~vr~~a~~a 104 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDE-RAVEPLIKAL--KDEDGWVRQSAAVA 104 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHT--TCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHH--cCCCHHHHHHHHHH
Confidence 444444444444444442 23333323322 24444444455555555542 3344444443 24566666667777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----H
Q 003020 748 YKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG----L 823 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G----~ 823 (856)
+...|+. ++...+.++++ .+++..-...+.++...|.. +++..+.++++ .++...-.....++.+.| .
T Consensus 105 L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~ 176 (211)
T 3ltm_A 105 LGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGGERVR 176 (211)
T ss_dssp HHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCSHHHH
T ss_pred HHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCchhHH
Confidence 7777764 34455555553 35777777777788777764 46666666664 677777778888888888 4
Q ss_pred HHHHhhcchhhHHHHHHHHhhH
Q 003020 824 ELTRKKNAQSGLQAWMSTLSSV 845 (856)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~ 845 (856)
+.+.....++++.+-......+
T Consensus 177 ~~L~~~l~d~~~~vr~~A~~aL 198 (211)
T 3ltm_A 177 AAMEKLAETGTGFARKVAVNYL 198 (211)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 5555555555555555444443
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.61 E-value=2.4e+02 Score=26.38 Aligned_cols=89 Identities=12% Similarity=0.006 Sum_probs=47.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003020 327 LIDTYGKAGQLKEASETFAQMLRE--GIVP----TTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFL 400 (856)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~~~~~--g~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 400 (856)
-++.+....++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+++. . .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHH
Confidence 477888999999999999887542 2221 11112222222222222223333333332 2 3344555556677
Q ss_pred HHccCChHHHHHHHHHHH
Q 003020 401 HAKNDKISMASRYFWKMK 418 (856)
Q Consensus 401 ~~~~g~~~~A~~~~~~m~ 418 (856)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777777777777775544
No 297
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=27.80 E-value=5.4e+02 Score=26.84 Aligned_cols=119 Identities=11% Similarity=0.013 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcC
Q 003020 163 ERSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKG 242 (856)
Q Consensus 163 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 242 (856)
.+..+.....+.+.|+++.... +++.-...|..-.+.+..+|+|++|.++--..+.. +--+..|.+.+-.+=..-
T Consensus 334 ivpyi~~~l~n~~lA~~lA~R~----~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~p 408 (494)
T 1bpo_A 334 IIPYITNVLQNPDLALRMAVRN----NLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQP 408 (494)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHT----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCT
T ss_pred chhhhhhccCCHHHHHHHHHhc----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCC
Confidence 4555666677888777665543 36666777888889999999999999987665543 333666665555444455
Q ss_pred CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 003020 243 GLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFF 287 (856)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 287 (856)
|...--+..|.-+.+.| ..+..----+++.-..+|+.+-.+..+
T Consensus 409 gq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 409 GQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp TSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHH
Confidence 66666667777766665 223322223334444455544443333
No 298
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.44 E-value=3.6e+02 Score=24.33 Aligned_cols=53 Identities=17% Similarity=0.180 Sum_probs=23.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCC
Q 003020 577 ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQ-----LEMAEEVYKDMIRFNV 630 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~ 630 (856)
..+++.|+-.+.+|++.| .|....-..++.+....|. ...|...++.....|.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 345555555555555555 3333333334444443332 2233444444444453
No 299
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.15 E-value=5.7e+02 Score=26.56 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 003020 648 GNVKQAQSYFDAMESAGLPPN 668 (856)
Q Consensus 648 g~~~~A~~~~~~~~~~~~~p~ 668 (856)
++.+.|+.++.+|.+.|..|.
T Consensus 269 sd~daAl~~la~ml~~Gedp~ 289 (447)
T 3pvs_A 269 SAPDAALYWYARIITAGGDPL 289 (447)
T ss_dssp TCHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 344444555555544443333
No 300
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.33 E-value=2.1e+02 Score=24.91 Aligned_cols=55 Identities=7% Similarity=-0.066 Sum_probs=38.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 003020 747 MYKRNGRFEEATRIAKQMRESGLIS--DLLSYNNVLG------LYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 747 ~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 801 (856)
.+...|++=+|.++++..-...+.+ +...|..|+. ...+.|++.-|..++.+.+.
T Consensus 41 ~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 41 RLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445688888888888887765555 3455555555 33567899999999998877
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=24.80 E-value=3.7e+02 Score=24.46 Aligned_cols=28 Identities=11% Similarity=0.048 Sum_probs=15.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003020 328 IDTYGKAGQLKEASETFAQMLREGIVPT 355 (856)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~~~~~g~~p~ 355 (856)
+...++.|+.+-...+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 4444556666666666665555554443
No 302
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=24.19 E-value=1.1e+02 Score=20.97 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003020 173 SWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQ 214 (856)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 214 (856)
+.++|..+.+|....+ .....+--..+..+..+|+|++|.
T Consensus 21 cH~EA~tIA~~L~~~~--~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 21 CHQEAASIADWLAQEE--CMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp CHHHHHHHHHHHHTSS--TTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHccchHhHhh
Confidence 7889999999988654 111222223334566788888774
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.17 E-value=3.2e+02 Score=23.40 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 708 NCMIDLYSERSMVRQAEEIFEIMK 731 (856)
Q Consensus 708 ~~l~~~~~~~g~~~~A~~~~~~~~ 731 (856)
..++.-|...|+.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 345555555666666666665553
No 304
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.83 E-value=3.1e+02 Score=23.32 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003020 743 MMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDG 787 (856)
Q Consensus 743 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 787 (856)
.++..+...+..-.|.++++.+.+.+|..+..|.+.-+..+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334444444444455555555555555445544444444444444
No 305
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=22.65 E-value=1.9e+02 Score=20.10 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=18.2
Q ss_pred cCCHHHHHHHHHHhHHcCCCCCCH
Q 003020 171 QSSWERALEIFEWFKRQECHELNV 194 (856)
Q Consensus 171 ~~~~~~A~~~~~~~~~~~~~~~~~ 194 (856)
..+++.|+..|......+.+||+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 448888999998887776677665
No 306
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.62 E-value=6.9e+02 Score=29.14 Aligned_cols=131 Identities=12% Similarity=0.035 Sum_probs=71.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003020 640 LINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSM 719 (856)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 719 (856)
++..+...|.++-|.++. .. .+.++..--.++.+|...|++++|...|+++.. |+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GG-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHHHH----hh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc----------
Confidence 555666677766554422 22 344444444677778888888888888876532 22211100000
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcC
Q 003020 720 VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLL----SYNNVLGLYAVDG 787 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g 787 (856)
.+....++.. .+.......-|..++..+.+.+-++-++++.+.+++.-...|+. .|..+.++.+..|
T Consensus 880 ~~~~~~ll~~-~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEK-YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHH-TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCc-ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0000011110 00111123367888889999999999999999998753332443 4556666665544
No 307
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=22.45 E-value=4.7e+02 Score=24.36 Aligned_cols=22 Identities=14% Similarity=-0.064 Sum_probs=14.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 003020 640 LINAFADVGNVKQAQSYFDAME 661 (856)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~ 661 (856)
-++.+....++++|.+++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 4556666667777776666554
No 308
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.81 E-value=4.3e+02 Score=23.80 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=10.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCC
Q 003020 542 GRNYDKACNLFDSMTSHGAVP 562 (856)
Q Consensus 542 ~g~~~~A~~~~~~m~~~~~~p 562 (856)
..+++.|+-.+-+|++.|..|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 345555555555555554443
No 309
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.72 E-value=3.4e+02 Score=22.38 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=11.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 003020 709 CMIDLYSERSMVRQAEEIFEIM 730 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~ 730 (856)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444555555555555555554
Done!