BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003021
(856 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OFU|A Chain A, Crystal Structure Of Cytochrome P450 Cyp101c1
pdb|3OFU|B Chain B, Crystal Structure Of Cytochrome P450 Cyp101c1
pdb|3OFU|C Chain C, Crystal Structure Of Cytochrome P450 Cyp101c1
pdb|3OFU|D Chain D, Crystal Structure Of Cytochrome P450 Cyp101c1
pdb|3OFU|E Chain E, Crystal Structure Of Cytochrome P450 Cyp101c1
pdb|3OFU|F Chain F, Crystal Structure Of Cytochrome P450 Cyp101c1
pdb|3OFT|A Chain A, Crystal Structure Of Cytochrome P450 Cyp101c1
pdb|3OFT|B Chain B, Crystal Structure Of Cytochrome P450 Cyp101c1
pdb|3OFT|C Chain C, Crystal Structure Of Cytochrome P450 Cyp101c1
Length = 396
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 27/205 (13%)
Query: 619 PGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSF--- 675
P ++ L DVPL+DR R VQ+ G+ + E LK + F
Sbjct: 145 PLNIFLTLIDVPLEDRPRLRQL-------GVQLTRPDGS-MTVEQLKQAADDYLWPFIEK 196
Query: 676 ---KDGEELPLSIVV--ISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEI 730
+ G++L I+ + R W + + R + + L + + +G+ +L
Sbjct: 197 RMAQPGDDLFSRILSEPVGGRPWTVDEARRMCRNLLFGGL--DTVAAMIGMVALHLARHP 254
Query: 731 VDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKD-ILNAEGDEIYVKDIS 789
D +L R +P L AA+E+M V N + +V D + +GD +Y+ +
Sbjct: 255 EDQRL----LRERPDLIPAAADELMRRYPTVAVSRNAVADVDADGVTIRKGDLVYLPSVL 310
Query: 790 LYMKEGENPSFFELSERAHLRREVA 814
+ +P+ FE E R +A
Sbjct: 311 HNL----DPASFEAPEEVRFDRGLA 331
>pdb|3V6A|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 474
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 72 KTDSSICMNVVDNSSFKFFRMDKKNTPQGYQAQLMIG 108
+TD S N+V+N+ F+MD K T G +Q++ G
Sbjct: 127 QTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQG 163
>pdb|1LK5|A Chain A, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|B Chain B, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|C Chain C, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|D Chain D, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK7|A Chain A, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|B Chain B, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|C Chain C, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|D Chain D, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
Length = 229
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 280 MQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLN---KYHEFSVRLGTATARKQRILLL 336
M+K+ ++ +E D +I G S ++ +K L K E S +G T+ + ++L +
Sbjct: 6 MKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAI 65
Query: 337 S-DLPRKQMDKL---------AENIAKDLNHIDILSKSLTLTKSYE 372
D+P +D++ A+ + +LN I +LT+ K E
Sbjct: 66 EHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIE 111
>pdb|3U0R|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 507
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 72 KTDSSICMNVVDNSSFKFFRMDKKNTPQGYQAQLMIG 108
+TD S N+V+N+ F+MD K T G +Q++ G
Sbjct: 110 QTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQG 146
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 221 ETQSLEDCLWEAWACLISSST---HLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFR 277
E + D LW WA + +++ + T + R++ I+ ++GI F + ST+T FR
Sbjct: 40 EINNYPDALW--WAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFR 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,821,552
Number of Sequences: 62578
Number of extensions: 893884
Number of successful extensions: 2114
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2111
Number of HSP's gapped (non-prelim): 9
length of query: 856
length of database: 14,973,337
effective HSP length: 107
effective length of query: 749
effective length of database: 8,277,491
effective search space: 6199840759
effective search space used: 6199840759
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)