Query 003021
Match_columns 856
No_of_seqs 364 out of 1589
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 15:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09496 trkA potassium transp 100.0 4.7E-34 1E-38 329.7 41.0 425 296-850 2-439 (453)
2 PF06241 DUF1012: Protein of u 100.0 5.5E-35 1.2E-39 281.9 21.4 205 379-592 1-205 (206)
3 KOG1420 Ca2+-activated K+ chan 100.0 1.1E-27 2.4E-32 262.9 24.7 582 223-849 287-1066(1103)
4 PRK10537 voltage-gated potassi 100.0 2.3E-26 5E-31 258.7 28.4 228 206-465 146-382 (393)
5 KOG3193 K+ channel subunit [In 99.9 2E-20 4.3E-25 205.2 20.6 368 144-530 133-547 (1087)
6 COG0569 TrkA K+ transport syst 99.8 2.5E-19 5.3E-24 188.3 19.9 206 296-531 2-213 (225)
7 PRK09496 trkA potassium transp 99.8 3.1E-18 6.6E-23 198.1 24.4 210 292-530 229-439 (453)
8 PRK10669 putative cation:proto 99.6 3.1E-14 6.8E-19 169.1 24.8 141 293-461 416-556 (558)
9 PRK03659 glutathione-regulated 99.5 1.1E-12 2.4E-17 156.8 25.3 132 293-452 399-530 (601)
10 COG0569 TrkA K+ transport syst 99.5 2.9E-13 6.2E-18 142.5 17.8 209 596-850 2-212 (225)
11 PF06241 DUF1012: Protein of u 99.5 2.3E-13 5E-18 132.7 15.6 153 684-853 3-155 (206)
12 PRK03562 glutathione-regulated 99.5 4.3E-12 9.3E-17 152.2 25.4 132 293-452 399-530 (621)
13 PF02254 TrkA_N: TrkA-N domain 99.5 5.9E-13 1.3E-17 125.0 12.3 116 297-440 1-116 (116)
14 PRK10537 voltage-gated potassi 99.3 9.8E-12 2.1E-16 140.7 14.8 143 593-776 239-382 (393)
15 PF02254 TrkA_N: TrkA-N domain 99.2 1.4E-10 3.1E-15 108.8 10.2 111 597-745 1-111 (116)
16 PRK10669 putative cation:proto 99.0 9.7E-10 2.1E-14 130.9 12.5 139 593-770 416-554 (558)
17 PRK03659 glutathione-regulated 98.9 8E-09 1.7E-13 123.9 13.4 120 593-752 399-518 (601)
18 PRK03562 glutathione-regulated 98.8 1.7E-08 3.6E-13 121.4 13.1 120 593-752 399-518 (621)
19 COG1226 Kch Kef-type K+ transp 98.6 1.1E-06 2.3E-11 89.2 14.8 143 290-460 17-160 (212)
20 PF07885 Ion_trans_2: Ion chan 98.5 3.8E-07 8.2E-12 80.0 9.3 70 206-277 5-78 (79)
21 COG0490 Putative regulatory, l 98.5 3E-07 6.6E-12 89.8 7.8 64 470-533 88-152 (162)
22 KOG3713 Voltage-gated K+ chann 98.4 5.3E-07 1.1E-11 101.7 8.2 94 186-282 335-436 (477)
23 PLN03192 Voltage-dependent pot 98.1 8.1E-06 1.8E-10 101.9 10.4 48 228-277 254-304 (823)
24 PF02080 TrkA_C: TrkA-C domain 98.0 6.7E-06 1.5E-10 70.2 4.0 60 471-531 3-63 (71)
25 KOG1419 Voltage-gated K+ chann 97.9 1.4E-05 3.1E-10 90.6 6.4 77 204-282 240-328 (654)
26 KOG3193 K+ channel subunit [In 97.9 0.00027 5.8E-09 79.7 14.9 231 591-847 284-544 (1087)
27 KOG1545 Voltage-gated shaker-l 97.8 3.3E-06 7.2E-11 91.0 -0.3 55 221-277 390-447 (507)
28 COG1226 Kch Kef-type K+ transp 97.6 0.00056 1.2E-08 69.2 12.5 137 592-767 19-156 (212)
29 KOG4404 Tandem pore domain K+ 97.6 0.00017 3.6E-09 77.6 7.8 78 196-277 160-248 (350)
30 KOG1420 Ca2+-activated K+ chan 97.5 0.00014 3.1E-09 82.4 6.8 230 592-850 355-620 (1103)
31 PF03493 BK_channel_a: Calcium 97.5 0.00028 6E-09 65.1 6.8 70 432-501 8-101 (101)
32 COG3273 Uncharacterized conser 97.3 0.0003 6.5E-09 70.2 4.9 62 470-531 121-183 (204)
33 COG3400 Uncharacterized protei 97.3 0.0027 5.8E-08 69.1 12.4 203 295-530 2-211 (471)
34 COG0490 Putative regulatory, l 97.0 0.0011 2.4E-08 65.2 5.3 63 782-852 89-151 (162)
35 KOG0498 K+-channel ERG and rel 96.8 0.0074 1.6E-07 73.1 11.3 52 225-278 295-349 (727)
36 KOG4390 Voltage-gated A-type K 96.7 0.00035 7.5E-09 76.3 -0.6 93 178-277 310-410 (632)
37 PF01007 IRK: Inward rectifier 96.6 0.0096 2.1E-07 66.5 9.9 106 188-302 29-160 (336)
38 TIGR03802 Asp_Ala_antiprt aspa 95.6 0.022 4.8E-07 68.2 6.9 62 470-532 220-282 (562)
39 KOG0501 K+-channel KCNQ [Inorg 95.4 0.063 1.4E-06 62.0 9.2 51 225-277 424-477 (971)
40 PRK05326 potassium/proton anti 95.3 0.024 5.1E-07 68.1 6.1 60 470-531 417-476 (562)
41 PRK03818 putative transporter; 95.1 0.024 5.2E-07 67.8 5.2 63 470-533 291-354 (552)
42 KOG1418 Tandem pore domain K+ 94.9 0.043 9.3E-07 62.5 6.3 61 221-283 112-175 (433)
43 COG3400 Uncharacterized protei 94.8 0.71 1.5E-05 50.9 14.5 208 595-849 2-210 (471)
44 TIGR03802 Asp_Ala_antiprt aspa 94.7 0.038 8.2E-07 66.2 5.4 63 470-533 304-371 (562)
45 PRK03818 putative transporter; 94.6 0.061 1.3E-06 64.4 6.8 61 470-532 207-268 (552)
46 PRK04972 putative transporter; 94.6 0.037 8.1E-07 66.2 4.9 63 470-533 304-366 (558)
47 PF02080 TrkA_C: TrkA-C domain 94.4 0.057 1.2E-06 45.8 4.4 58 782-850 3-62 (71)
48 KOG4404 Tandem pore domain K+ 94.3 0.055 1.2E-06 58.8 4.9 42 220-263 76-120 (350)
49 KOG3684 Ca2+-activated K+ chan 93.4 0.3 6.6E-06 55.5 8.8 76 200-277 257-341 (489)
50 PRK06719 precorrin-2 dehydroge 93.4 0.28 6.2E-06 48.9 7.8 80 293-404 12-91 (157)
51 PRK04972 putative transporter; 93.1 0.18 4E-06 60.4 7.0 50 481-531 229-279 (558)
52 KOG0500 Cyclic nucleotide-gate 92.6 0.62 1.4E-05 53.5 9.8 51 225-277 184-236 (536)
53 PF00520 Ion_trans: Ion transp 92.3 1.1 2.4E-05 44.7 10.7 48 223-272 144-200 (200)
54 KOG0499 Cyclic nucleotide-gate 92.3 0.59 1.3E-05 54.6 9.2 57 220-278 399-457 (815)
55 PRK06719 precorrin-2 dehydroge 92.0 0.48 1E-05 47.3 7.3 34 593-629 12-45 (157)
56 COG3273 Uncharacterized conser 90.5 0.47 1E-05 47.9 5.4 50 797-850 133-182 (204)
57 COG3263 NhaP-type Na+/H+ and K 89.9 0.45 9.7E-06 54.0 5.2 52 477-531 422-474 (574)
58 PRK06718 precorrin-2 dehydroge 89.8 1.3 2.9E-05 46.1 8.5 72 293-389 9-80 (202)
59 KOG3827 Inward rectifier K+ ch 89.2 1.8 4E-05 48.5 9.2 74 223-303 111-189 (400)
60 COG1748 LYS9 Saccharopine dehy 89.0 12 0.00027 42.8 16.0 181 295-514 2-198 (389)
61 KOG1053 Glutamate-gated NMDA-t 86.2 3.9 8.5E-05 50.1 10.2 80 198-277 568-663 (1258)
62 TIGR01470 cysG_Nterm siroheme 83.8 6.8 0.00015 40.9 9.8 70 294-388 9-78 (205)
63 KOG1418 Tandem pore domain K+ 83.0 0.11 2.4E-06 59.1 -4.3 63 204-270 224-297 (433)
64 TIGR01470 cysG_Nterm siroheme 82.5 6.9 0.00015 40.8 9.2 56 594-660 9-64 (205)
65 PF03435 Saccharop_dh: Sacchar 79.1 8.4 0.00018 43.9 9.2 89 297-404 1-89 (386)
66 PF00670 AdoHcyase_NAD: S-aden 77.2 7.9 0.00017 38.9 7.2 65 293-388 22-87 (162)
67 PRK05562 precorrin-2 dehydroge 76.9 18 0.00039 38.4 10.1 70 294-388 25-94 (223)
68 PF13460 NAD_binding_10: NADH( 76.6 8.9 0.00019 38.2 7.7 69 297-388 1-70 (183)
69 PF01408 GFO_IDH_MocA: Oxidore 75.5 36 0.00078 31.4 11.0 71 296-388 2-72 (120)
70 cd05213 NAD_bind_Glutamyl_tRNA 74.8 35 0.00075 37.9 12.3 120 293-444 177-297 (311)
71 PF00060 Lig_chan: Ligand-gate 74.8 5.7 0.00012 38.3 5.5 55 224-278 44-98 (148)
72 PF03807 F420_oxidored: NADP o 74.7 9.4 0.0002 34.0 6.5 44 297-350 2-45 (96)
73 PRK06718 precorrin-2 dehydroge 74.5 7.1 0.00015 40.6 6.4 34 594-630 10-43 (202)
74 PF05368 NmrA: NmrA-like famil 73.1 19 0.00042 37.5 9.4 72 297-388 1-74 (233)
75 PF13460 NAD_binding_10: NADH( 72.7 18 0.0004 35.9 8.8 56 597-667 1-57 (183)
76 COG2985 Predicted permease [Ge 72.3 3.4 7.4E-05 47.8 3.6 57 476-533 210-267 (544)
77 PLN02819 lysine-ketoglutarate 71.6 31 0.00067 44.6 12.1 114 294-424 569-683 (1042)
78 cd01078 NAD_bind_H4MPT_DH NADP 71.3 72 0.0016 32.5 12.9 79 293-388 27-106 (194)
79 COG1748 LYS9 Saccharopine dehy 68.7 26 0.00057 40.2 9.6 64 595-667 2-65 (389)
80 CHL00194 ycf39 Ycf39; Provisio 67.6 31 0.00068 38.0 10.0 59 596-667 2-61 (317)
81 PF01488 Shikimate_DH: Shikima 66.0 20 0.00043 34.6 7.0 122 292-443 10-132 (135)
82 COG1086 Predicted nucleoside-d 64.2 2.3E+02 0.005 34.2 16.2 76 291-389 113-188 (588)
83 PF03493 BK_channel_a: Calcium 63.7 45 0.00098 30.7 8.5 71 745-818 10-101 (101)
84 PRK05326 potassium/proton anti 63.2 9.1 0.0002 46.1 5.0 44 803-850 432-475 (562)
85 TIGR03466 HpnA hopanoid-associ 63.0 55 0.0012 35.6 10.8 59 596-667 2-61 (328)
86 PF00106 adh_short: short chai 62.7 30 0.00065 33.7 7.8 65 295-372 1-68 (167)
87 TIGR03023 WcaJ_sugtrans Undeca 61.0 1.1E+02 0.0023 35.8 13.2 24 294-317 128-151 (451)
88 cd01075 NAD_bind_Leu_Phe_Val_D 60.9 1.5E+02 0.0033 30.6 13.0 42 294-349 28-69 (200)
89 PLN03223 Polycystin cation cha 60.3 76 0.0017 41.6 12.0 60 221-281 1358-1427(1634)
90 KOG4440 NMDA selective glutama 59.9 21 0.00045 42.5 6.7 55 221-275 610-665 (993)
91 PRK06437 hypothetical protein; 59.2 22 0.00048 30.2 5.2 43 481-526 19-62 (67)
92 PRK06522 2-dehydropantoate 2-r 58.7 78 0.0017 34.4 11.0 40 296-349 2-41 (304)
93 PRK08267 short chain dehydroge 57.6 21 0.00046 37.8 6.1 64 595-667 2-66 (260)
94 PRK12475 thiamine/molybdopteri 56.2 80 0.0017 35.6 10.6 26 293-318 23-48 (338)
95 PLN02214 cinnamoyl-CoA reducta 56.2 1.1E+02 0.0024 34.1 11.9 68 594-667 10-78 (342)
96 PF05368 NmrA: NmrA-like famil 55.7 20 0.00043 37.4 5.5 60 597-667 1-61 (233)
97 cd01065 NAD_bind_Shikimate_DH 55.6 50 0.0011 32.0 7.9 45 293-350 18-62 (155)
98 COG0300 DltE Short-chain dehyd 55.2 48 0.001 36.1 8.2 68 293-375 5-75 (265)
99 cd05211 NAD_bind_Glu_Leu_Phe_V 54.7 76 0.0016 33.5 9.5 36 293-341 22-57 (217)
100 KOG3676 Ca2+-permeable cation 54.6 62 0.0013 40.0 9.7 82 197-278 544-649 (782)
101 TIGR03025 EPS_sugtrans exopoly 54.5 1.6E+02 0.0034 34.4 13.1 24 294-317 125-148 (445)
102 CHL00194 ycf39 Ycf39; Provisio 53.8 50 0.0011 36.4 8.5 71 296-387 2-73 (317)
103 COG0373 HemA Glutamyl-tRNA red 53.0 1.3E+02 0.0029 34.9 11.7 119 293-442 177-296 (414)
104 PRK08364 sulfur carrier protei 52.5 30 0.00065 29.5 5.0 43 481-526 22-65 (70)
105 COG1087 GalE UDP-glucose 4-epi 52.5 68 0.0015 35.6 8.8 106 596-722 2-111 (329)
106 PLN00141 Tic62-NAD(P)-related 52.2 1.1E+02 0.0023 32.4 10.4 63 594-667 17-81 (251)
107 PRK05562 precorrin-2 dehydroge 51.4 85 0.0019 33.3 9.2 60 593-664 24-83 (223)
108 PF07991 IlvN: Acetohydroxy ac 50.1 28 0.0006 35.1 5.0 67 294-388 4-70 (165)
109 PF03435 Saccharop_dh: Sacchar 48.7 34 0.00073 39.0 6.2 64 597-667 1-64 (386)
110 PF10727 Rossmann-like: Rossma 47.8 73 0.0016 30.7 7.4 101 294-427 10-110 (127)
111 PRK06949 short chain dehydroge 47.1 98 0.0021 32.4 9.1 68 292-373 7-75 (258)
112 PF13241 NAD_binding_7: Putati 46.2 32 0.00069 31.6 4.5 34 593-629 6-39 (103)
113 PRK07806 short chain dehydroge 45.8 46 0.001 34.7 6.4 68 594-667 6-74 (248)
114 TIGR02356 adenyl_thiF thiazole 45.6 1E+02 0.0022 32.0 8.6 26 293-318 20-45 (202)
115 PRK06924 short chain dehydroge 45.5 50 0.0011 34.5 6.6 64 595-667 2-66 (251)
116 PRK12939 short chain dehydroge 44.6 1.2E+02 0.0025 31.5 9.2 80 293-386 6-92 (250)
117 PLN00203 glutamyl-tRNA reducta 44.6 2.1E+02 0.0045 34.4 12.0 125 294-442 266-391 (519)
118 PRK12829 short chain dehydroge 44.4 47 0.001 35.0 6.2 65 594-667 11-76 (264)
119 PRK09291 short chain dehydroge 44.3 1.6E+02 0.0034 30.8 10.2 78 295-386 3-81 (257)
120 PRK10637 cysG siroheme synthas 44.3 1.2E+02 0.0026 35.6 10.1 71 293-388 11-81 (457)
121 PRK12548 shikimate 5-dehydroge 44.2 1.1E+02 0.0025 33.4 9.3 80 294-388 126-208 (289)
122 PRK07326 short chain dehydroge 44.0 48 0.001 34.3 6.1 65 594-667 6-72 (237)
123 COG0499 SAM1 S-adenosylhomocys 44.0 58 0.0013 36.9 6.7 64 294-388 209-273 (420)
124 PRK07024 short chain dehydroge 43.8 61 0.0013 34.2 6.9 65 595-667 3-68 (257)
125 PRK07454 short chain dehydroge 43.8 45 0.00098 34.7 5.9 67 594-667 6-73 (241)
126 PRK15181 Vi polysaccharide bio 43.5 1.6E+02 0.0034 32.9 10.5 114 594-722 15-134 (348)
127 PRK01581 speE spermidine synth 43.2 1.7E+02 0.0036 33.6 10.3 67 593-666 150-222 (374)
128 PRK08063 enoyl-(acyl carrier p 43.1 1E+02 0.0022 32.1 8.5 66 295-373 5-71 (250)
129 PRK07074 short chain dehydroge 43.0 52 0.0011 34.6 6.3 64 595-667 3-67 (257)
130 TIGR03022 WbaP_sugtrans Undeca 43.0 4.8E+02 0.01 30.4 14.8 24 294-317 125-148 (456)
131 COG4292 Predicted membrane pro 42.9 25 0.00054 39.4 3.7 42 225-266 57-98 (387)
132 PF00070 Pyr_redox: Pyridine n 42.7 33 0.00072 29.6 3.9 32 596-630 1-32 (80)
133 PRK06947 glucose-1-dehydrogena 42.1 1.3E+02 0.0028 31.4 9.0 25 294-318 2-27 (248)
134 KOG1014 17 beta-hydroxysteroid 42.1 3.9E+02 0.0085 29.8 12.6 43 294-350 49-92 (312)
135 PRK12935 acetoacetyl-CoA reduc 42.1 1.3E+02 0.0028 31.3 9.1 26 293-318 5-31 (247)
136 PRK00045 hemA glutamyl-tRNA re 42.0 2.8E+02 0.0061 32.2 12.5 120 293-441 181-301 (423)
137 cd01483 E1_enzyme_family Super 41.9 1.3E+02 0.0028 28.9 8.3 23 296-318 1-23 (143)
138 KOG1210 Predicted 3-ketosphing 41.9 1.6E+02 0.0035 32.9 9.6 60 293-366 32-92 (331)
139 PRK05565 fabG 3-ketoacyl-(acyl 41.8 1.1E+02 0.0024 31.6 8.5 67 294-373 5-72 (247)
140 PRK12746 short chain dehydroge 41.4 1.4E+02 0.003 31.2 9.2 67 294-373 6-73 (254)
141 PLN02780 ketoreductase/ oxidor 41.2 1.7E+02 0.0037 32.5 10.2 43 294-350 53-96 (320)
142 PRK07097 gluconate 5-dehydroge 40.9 1.2E+02 0.0027 32.0 8.8 66 294-373 10-76 (265)
143 PRK07326 short chain dehydroge 40.7 1.3E+02 0.0027 31.1 8.7 64 294-372 6-70 (237)
144 KOG3599 Ca2+-modulated nonsele 40.7 2E+02 0.0043 36.4 11.4 98 185-283 581-686 (798)
145 cd01485 E1-1_like Ubiquitin ac 40.6 1.5E+02 0.0033 30.6 9.1 34 594-629 19-52 (198)
146 PRK13302 putative L-aspartate 40.5 2.9E+02 0.0063 30.0 11.6 71 295-388 7-77 (271)
147 COG1648 CysG Siroheme synthase 40.4 1.3E+02 0.0028 31.6 8.5 44 294-350 12-55 (210)
148 PRK06194 hypothetical protein; 40.3 57 0.0012 35.0 6.1 67 594-667 6-73 (287)
149 PRK07024 short chain dehydroge 40.2 1.2E+02 0.0026 32.0 8.5 65 294-373 2-67 (257)
150 PRK05557 fabG 3-ketoacyl-(acyl 39.9 1.4E+02 0.0031 30.7 8.9 68 294-374 5-73 (248)
151 PRK12475 thiamine/molybdopteri 39.8 2.8E+02 0.0062 31.2 11.7 34 593-629 23-57 (338)
152 PRK12429 3-hydroxybutyrate deh 39.5 1.3E+02 0.0029 31.3 8.7 66 294-373 4-70 (258)
153 cd00565 ThiS ThiaminS ubiquiti 39.4 48 0.001 27.7 4.2 44 482-527 14-61 (65)
154 PF08016 PKD_channel: Polycyst 39.3 2.3E+02 0.005 32.8 11.3 92 185-277 324-423 (425)
155 PLN02214 cinnamoyl-CoA reducta 39.1 1.6E+02 0.0035 32.8 9.7 81 294-388 10-91 (342)
156 PRK04148 hypothetical protein; 38.6 1.1E+02 0.0024 29.9 7.0 51 294-365 17-67 (134)
157 COG1648 CysG Siroheme synthase 38.6 1E+02 0.0022 32.4 7.3 35 593-630 11-45 (210)
158 COG2104 ThiS Sulfur transfer p 38.5 67 0.0015 27.5 4.9 43 482-526 17-63 (68)
159 TIGR03589 PseB UDP-N-acetylglu 38.3 2.6E+02 0.0055 30.9 11.1 66 595-667 5-71 (324)
160 PRK07666 fabG 3-ketoacyl-(acyl 38.3 1.6E+02 0.0034 30.6 8.9 42 293-348 6-48 (239)
161 PLN02583 cinnamoyl-CoA reducta 38.0 1.9E+02 0.0041 31.5 9.8 77 294-384 6-84 (297)
162 COG4262 Predicted spermidine s 37.9 1.3E+02 0.0028 34.2 8.2 83 592-692 288-377 (508)
163 PF02386 TrkH: Cation transpor 37.4 47 0.001 37.6 5.0 81 187-268 258-346 (354)
164 PLN03209 translocon at the inn 37.3 2.7E+02 0.0058 33.9 11.4 70 593-667 79-156 (576)
165 PRK03369 murD UDP-N-acetylmura 37.3 1.6E+02 0.0035 34.9 9.7 29 290-318 8-36 (488)
166 PRK12826 3-ketoacyl-(acyl-carr 37.2 1.6E+02 0.0034 30.5 8.8 79 294-386 6-91 (251)
167 PRK05993 short chain dehydroge 37.1 1.2E+02 0.0025 32.6 7.9 60 294-373 4-64 (277)
168 PRK06194 hypothetical protein; 37.1 1.5E+02 0.0032 31.7 8.8 67 294-374 6-73 (287)
169 PRK06124 gluconate 5-dehydroge 36.9 1.6E+02 0.0034 30.9 8.8 66 294-373 11-77 (256)
170 PRK06172 short chain dehydroge 36.7 1.6E+02 0.0034 30.8 8.7 41 294-348 7-48 (253)
171 PLN02583 cinnamoyl-CoA reducta 36.6 91 0.002 34.0 7.1 69 594-668 6-76 (297)
172 PRK08251 short chain dehydroge 36.4 79 0.0017 33.0 6.3 67 595-667 3-71 (248)
173 PRK12825 fabG 3-ketoacyl-(acyl 36.4 1.4E+02 0.0031 30.6 8.3 79 296-387 8-93 (249)
174 PRK07904 short chain dehydroge 36.3 74 0.0016 33.8 6.1 71 593-667 7-78 (253)
175 cd01491 Ube1_repeat1 Ubiquitin 36.3 3.3E+02 0.0071 30.1 11.1 35 594-630 19-53 (286)
176 PLN02427 UDP-apiose/xylose syn 36.3 1E+02 0.0022 34.9 7.6 70 593-667 13-83 (386)
177 TIGR01683 thiS thiamine biosyn 36.1 92 0.002 25.9 5.4 44 482-527 13-60 (64)
178 PLN02819 lysine-ketoglutarate 36.0 90 0.002 40.5 7.6 66 592-667 567-645 (1042)
179 PLN02695 GDP-D-mannose-3',5'-e 36.0 4.2E+02 0.009 30.0 12.5 62 593-667 20-82 (370)
180 PRK07576 short chain dehydroge 36.0 1.6E+02 0.0034 31.3 8.7 67 293-373 8-75 (264)
181 PF00106 adh_short: short chai 35.8 71 0.0015 30.9 5.5 68 595-667 1-70 (167)
182 PRK05482 potassium-transportin 35.7 1.7E+02 0.0036 35.4 9.2 49 222-270 449-501 (559)
183 TIGR01832 kduD 2-deoxy-D-gluco 35.5 92 0.002 32.4 6.7 65 594-667 5-70 (248)
184 PRK10637 cysG siroheme synthas 35.3 1.6E+02 0.0036 34.5 9.3 57 593-660 11-67 (457)
185 PRK06924 short chain dehydroge 35.2 1.5E+02 0.0033 30.8 8.3 24 295-318 2-26 (251)
186 PRK07774 short chain dehydroge 35.2 1.6E+02 0.0035 30.5 8.5 26 293-318 5-31 (250)
187 PRK07806 short chain dehydroge 35.0 1.8E+02 0.0039 30.2 8.8 24 295-318 7-31 (248)
188 PRK09186 flagellin modificatio 34.9 77 0.0017 33.2 6.0 69 594-667 4-73 (256)
189 PRK13304 L-aspartate dehydroge 34.9 6.1E+02 0.013 27.3 13.1 68 296-387 3-70 (265)
190 KOG1430 C-3 sterol dehydrogena 34.7 2.1E+02 0.0046 32.6 9.6 113 593-722 3-119 (361)
191 PRK07231 fabG 3-ketoacyl-(acyl 34.7 86 0.0019 32.6 6.3 65 594-667 5-71 (251)
192 TIGR01035 hemA glutamyl-tRNA r 34.6 3.6E+02 0.0078 31.3 11.8 119 293-442 179-299 (417)
193 PRK08017 oxidoreductase; Provi 34.6 1.5E+02 0.0032 31.0 8.1 56 295-370 3-59 (256)
194 PRK07523 gluconate 5-dehydroge 34.5 76 0.0016 33.4 5.8 67 594-667 10-77 (255)
195 PRK08265 short chain dehydroge 34.5 91 0.002 33.1 6.5 64 594-667 6-70 (261)
196 TIGR01181 dTDP_gluc_dehyt dTDP 34.4 91 0.002 33.6 6.6 67 596-667 1-68 (317)
197 PRK12745 3-ketoacyl-(acyl-carr 34.4 87 0.0019 32.7 6.3 67 595-667 3-70 (256)
198 PF00670 AdoHcyase_NAD: S-aden 34.3 34 0.00074 34.4 2.9 36 593-631 22-57 (162)
199 PF03446 NAD_binding_2: NAD bi 34.1 2.8E+02 0.006 27.4 9.5 40 296-349 3-42 (163)
200 PRK10675 UDP-galactose-4-epime 34.1 2.7E+02 0.0059 30.5 10.5 64 596-667 2-68 (338)
201 PRK07454 short chain dehydroge 34.1 2E+02 0.0044 29.7 9.0 65 295-373 7-72 (241)
202 PRK05866 short chain dehydroge 34.1 1.6E+02 0.0036 32.0 8.6 43 294-350 40-83 (293)
203 PRK12937 short chain dehydroge 34.1 1.8E+02 0.004 30.0 8.6 25 294-318 5-30 (245)
204 PRK08267 short chain dehydroge 34.0 1.7E+02 0.0037 30.8 8.5 64 295-374 2-66 (260)
205 PRK06139 short chain dehydroge 33.9 1.8E+02 0.0039 32.5 8.9 67 293-373 6-73 (330)
206 PF08659 KR: KR domain; Inter 33.8 80 0.0017 31.8 5.6 68 596-668 2-72 (181)
207 PRK12829 short chain dehydroge 33.8 1.8E+02 0.004 30.4 8.7 78 293-386 10-94 (264)
208 PRK12921 2-dehydropantoate 2-r 33.8 2.7E+02 0.0059 30.2 10.2 23 296-318 2-24 (305)
209 TIGR00870 trp transient-recept 33.8 1.8E+02 0.0038 36.4 9.7 30 249-278 587-617 (743)
210 TIGR03649 ergot_EASG ergot alk 33.6 2.1E+02 0.0046 30.6 9.3 69 297-388 2-77 (285)
211 PRK06940 short chain dehydroge 33.5 1.7E+02 0.0037 31.4 8.5 40 294-348 2-41 (275)
212 PRK12743 oxidoreductase; Provi 33.5 2.1E+02 0.0045 30.1 9.0 63 296-371 4-67 (256)
213 PF01210 NAD_Gly3P_dh_N: NAD-d 33.2 85 0.0018 31.0 5.6 75 297-387 2-78 (157)
214 PRK08936 glucose-1-dehydrogena 33.2 2.1E+02 0.0045 30.2 9.0 25 294-318 7-32 (261)
215 PLN03209 translocon at the inn 33.1 2.3E+02 0.0049 34.5 9.9 80 293-387 79-168 (576)
216 PRK05557 fabG 3-ketoacyl-(acyl 33.1 96 0.0021 32.0 6.3 68 594-667 5-73 (248)
217 PRK06182 short chain dehydroge 33.1 1.7E+02 0.0038 31.0 8.4 73 294-386 3-82 (273)
218 PRK09730 putative NAD(P)-bindi 32.7 1.8E+02 0.0039 30.0 8.3 22 297-318 4-26 (247)
219 PRK05993 short chain dehydroge 32.5 62 0.0014 34.7 4.9 61 594-667 4-65 (277)
220 PRK06914 short chain dehydroge 32.5 1E+02 0.0022 33.0 6.5 66 595-666 4-71 (280)
221 PRK12481 2-deoxy-D-gluconate 3 32.3 1.1E+02 0.0023 32.3 6.6 65 594-667 8-73 (251)
222 TIGR03649 ergot_EASG ergot alk 32.2 63 0.0014 34.8 4.8 56 596-667 1-57 (285)
223 PRK05867 short chain dehydroge 32.1 2E+02 0.0043 30.1 8.6 43 294-350 9-52 (253)
224 PRK08213 gluconate 5-dehydroge 32.1 2E+02 0.0044 30.1 8.7 65 294-372 12-77 (259)
225 TIGR00518 alaDH alanine dehydr 32.0 1.7E+02 0.0037 33.4 8.5 70 294-384 167-236 (370)
226 PRK12429 3-hydroxybutyrate deh 32.0 89 0.0019 32.6 5.9 66 595-667 5-71 (258)
227 PRK12745 3-ketoacyl-(acyl-carr 31.9 2.3E+02 0.0049 29.6 9.0 24 295-318 3-27 (256)
228 PRK06488 sulfur carrier protei 31.9 1.2E+02 0.0026 25.2 5.5 44 482-527 14-61 (65)
229 PRK08416 7-alpha-hydroxysteroi 31.8 2.1E+02 0.0045 30.2 8.7 43 294-349 8-51 (260)
230 PRK08017 oxidoreductase; Provi 31.8 61 0.0013 33.9 4.6 60 595-667 3-63 (256)
231 PF01073 3Beta_HSD: 3-beta hyd 31.7 2.2E+02 0.0047 31.1 8.9 60 599-667 3-63 (280)
232 PRK05876 short chain dehydroge 31.6 2.1E+02 0.0046 30.7 8.8 42 294-349 6-48 (275)
233 PF08659 KR: KR domain; Inter 31.2 1.6E+02 0.0036 29.6 7.4 32 296-339 2-34 (181)
234 PRK05650 short chain dehydroge 31.0 1.9E+02 0.0042 30.6 8.4 63 296-372 2-65 (270)
235 PRK06079 enoyl-(acyl carrier p 31.0 1.2E+02 0.0027 31.9 6.8 64 594-667 7-73 (252)
236 COG0169 AroE Shikimate 5-dehyd 31.0 1.4E+02 0.0031 32.9 7.2 46 293-351 125-170 (283)
237 PRK12828 short chain dehydroge 30.9 88 0.0019 32.1 5.5 65 594-667 7-72 (239)
238 PRK01438 murD UDP-N-acetylmura 30.7 1.9E+02 0.0041 33.9 8.9 26 293-318 15-40 (480)
239 PF01488 Shikimate_DH: Shikima 30.7 86 0.0019 30.2 5.0 44 593-640 11-54 (135)
240 PRK07890 short chain dehydroge 30.5 2.3E+02 0.005 29.6 8.8 65 294-372 5-70 (258)
241 PRK09134 short chain dehydroge 30.5 2.3E+02 0.005 29.7 8.8 67 294-373 9-76 (258)
242 PRK08643 acetoin reductase; Va 30.4 2.2E+02 0.0047 29.8 8.5 41 295-349 3-44 (256)
243 PRK13940 glutamyl-tRNA reducta 30.3 1.9E+02 0.0041 33.7 8.5 72 294-389 181-252 (414)
244 PRK07109 short chain dehydroge 30.2 2.3E+02 0.0051 31.5 9.1 68 293-374 7-75 (334)
245 PRK08594 enoyl-(acyl carrier p 30.2 1.3E+02 0.0028 32.0 6.8 67 594-667 7-77 (257)
246 PRK12938 acetyacetyl-CoA reduc 30.1 1.2E+02 0.0026 31.6 6.4 67 595-667 4-71 (246)
247 PRK07440 hypothetical protein; 30.1 1.3E+02 0.0028 25.8 5.4 44 481-526 18-65 (70)
248 KOG1370 S-adenosylhomocysteine 30.1 98 0.0021 34.3 5.6 63 294-387 214-277 (434)
249 PRK06179 short chain dehydroge 30.0 89 0.0019 33.1 5.5 58 595-667 5-63 (270)
250 PLN02650 dihydroflavonol-4-red 30.0 3.7E+02 0.008 29.8 10.7 67 594-667 5-74 (351)
251 PRK07231 fabG 3-ketoacyl-(acyl 29.8 2.3E+02 0.0049 29.4 8.5 66 294-374 5-71 (251)
252 PRK08219 short chain dehydroge 29.8 2.4E+02 0.0051 28.7 8.5 74 295-387 4-80 (227)
253 PRK01710 murD UDP-N-acetylmura 29.8 2.7E+02 0.0058 32.6 9.9 25 294-318 14-38 (458)
254 PRK07523 gluconate 5-dehydroge 29.6 2.3E+02 0.0051 29.6 8.6 42 294-349 10-52 (255)
255 TIGR02415 23BDH acetoin reduct 29.6 2.1E+02 0.0046 29.7 8.3 64 296-373 2-66 (254)
256 PRK06138 short chain dehydroge 29.5 1.3E+02 0.0028 31.3 6.6 66 594-667 5-71 (252)
257 PRK05884 short chain dehydroge 29.5 97 0.0021 32.2 5.6 60 596-667 2-62 (223)
258 PRK06114 short chain dehydroge 29.4 2.5E+02 0.0055 29.4 8.9 25 294-318 8-33 (254)
259 PRK09414 glutamate dehydrogena 29.4 2E+02 0.0044 33.7 8.5 34 292-338 230-263 (445)
260 PRK07831 short chain dehydroge 29.3 1.1E+02 0.0024 32.3 6.1 69 594-667 17-87 (262)
261 PRK06182 short chain dehydroge 29.3 73 0.0016 34.0 4.7 61 594-667 3-64 (273)
262 PRK09135 pteridine reductase; 29.3 1.2E+02 0.0026 31.4 6.2 69 594-667 6-75 (249)
263 PRK08416 7-alpha-hydroxysteroi 29.2 1.1E+02 0.0023 32.4 6.0 68 594-667 8-77 (260)
264 PLN00141 Tic62-NAD(P)-related 29.2 1.8E+02 0.0038 30.7 7.6 75 294-386 17-93 (251)
265 COG1584 Predicted membrane pro 29.0 1.1E+02 0.0024 31.6 5.5 47 226-272 87-137 (207)
266 PRK08063 enoyl-(acyl carrier p 29.0 1.2E+02 0.0026 31.5 6.3 67 595-667 5-72 (250)
267 cd00757 ThiF_MoeB_HesA_family 29.0 2.2E+02 0.0048 30.0 8.2 26 293-318 20-45 (228)
268 PLN02896 cinnamyl-alcohol dehy 28.9 2.9E+02 0.0062 30.8 9.6 80 293-388 9-89 (353)
269 PRK06181 short chain dehydroge 28.9 2.3E+02 0.005 29.7 8.5 64 295-372 2-66 (263)
270 PF01370 Epimerase: NAD depend 28.8 2.8E+02 0.0061 28.3 8.9 73 297-388 1-75 (236)
271 TIGR01831 fabG_rel 3-oxoacyl-( 28.8 2E+02 0.0044 29.6 7.9 39 297-348 1-40 (239)
272 PRK06101 short chain dehydroge 28.7 1.3E+02 0.0028 31.4 6.4 62 595-667 2-64 (240)
273 PRK09242 tropinone reductase; 28.7 1.1E+02 0.0023 32.2 5.9 69 594-667 9-78 (257)
274 PRK05659 sulfur carrier protei 28.7 1.2E+02 0.0026 25.1 5.0 45 481-526 14-61 (66)
275 PRK06101 short chain dehydroge 28.6 2.1E+02 0.0046 29.7 8.0 61 296-374 3-64 (240)
276 PRK06914 short chain dehydroge 28.6 2.6E+02 0.0056 29.7 8.8 66 294-373 3-71 (280)
277 PLN02274 inosine-5'-monophosph 28.5 4.9E+02 0.011 31.2 11.7 141 292-456 232-391 (505)
278 PF02558 ApbA: Ketopantoate re 28.5 2.9E+02 0.0063 26.4 8.5 22 297-318 1-22 (151)
279 TIGR01472 gmd GDP-mannose 4,6- 28.5 1.2E+02 0.0027 33.5 6.5 69 595-667 1-73 (343)
280 TIGR01289 LPOR light-dependent 28.4 2.5E+02 0.0054 30.9 8.9 42 294-349 3-46 (314)
281 PRK12742 oxidoreductase; Provi 28.4 3E+02 0.0064 28.3 9.0 43 294-349 6-49 (237)
282 PRK07890 short chain dehydroge 28.3 1.1E+02 0.0024 32.0 5.9 67 594-667 5-72 (258)
283 PRK12935 acetoacetyl-CoA reduc 28.3 1.4E+02 0.003 31.0 6.6 68 594-667 6-74 (247)
284 PRK12824 acetoacetyl-CoA reduc 28.1 1.6E+02 0.0034 30.5 6.9 67 595-667 3-70 (245)
285 PRK06988 putative formyltransf 28.1 2.1E+02 0.0045 31.9 8.1 23 296-318 4-26 (312)
286 PRK12937 short chain dehydroge 28.0 1.5E+02 0.0033 30.6 6.8 67 594-667 5-73 (245)
287 PRK07688 thiamine/molybdopteri 28.0 3.5E+02 0.0075 30.6 9.9 27 292-318 22-48 (339)
288 TIGR03325 BphB_TodD cis-2,3-di 27.9 1.4E+02 0.0031 31.4 6.7 64 594-667 5-69 (262)
289 PRK13394 3-hydroxybutyrate deh 27.9 1.5E+02 0.0031 31.1 6.7 67 594-667 7-74 (262)
290 PRK12825 fabG 3-ketoacyl-(acyl 27.8 1.3E+02 0.0029 30.9 6.3 67 595-667 7-74 (249)
291 PRK06841 short chain dehydroge 27.8 1.3E+02 0.0029 31.4 6.3 64 594-667 15-79 (255)
292 PRK05653 fabG 3-ketoacyl-(acyl 27.7 2.6E+02 0.0057 28.6 8.5 65 295-373 6-71 (246)
293 PRK07814 short chain dehydroge 27.7 2.8E+02 0.006 29.3 8.8 66 294-373 10-76 (263)
294 PRK08993 2-deoxy-D-gluconate 3 27.7 1.9E+02 0.0042 30.3 7.6 65 594-667 10-75 (253)
295 PRK07062 short chain dehydroge 27.7 1.2E+02 0.0026 32.0 6.0 68 594-667 8-77 (265)
296 PRK07023 short chain dehydroge 27.6 1.6E+02 0.0034 30.7 6.8 60 596-667 3-63 (243)
297 PRK05866 short chain dehydroge 27.6 1.4E+02 0.0031 32.4 6.7 66 594-667 40-107 (293)
298 PRK06940 short chain dehydroge 27.5 1.2E+02 0.0027 32.5 6.1 66 594-667 2-67 (275)
299 PRK07063 short chain dehydroge 27.4 2.6E+02 0.0056 29.4 8.5 43 294-350 7-50 (260)
300 PRK07478 short chain dehydroge 27.3 2.7E+02 0.0059 29.1 8.6 41 295-349 7-48 (254)
301 PRK09186 flagellin modificatio 27.2 2.8E+02 0.006 28.9 8.7 42 294-349 4-46 (256)
302 PRK08226 short chain dehydroge 27.2 1.3E+02 0.0029 31.6 6.2 66 594-667 6-72 (263)
303 PRK05482 potassium-transportin 27.1 1.6E+02 0.0034 35.5 7.1 81 179-261 265-368 (559)
304 cd01483 E1_enzyme_family Super 27.1 3.2E+02 0.0069 26.2 8.4 31 596-629 1-32 (143)
305 PRK07792 fabG 3-ketoacyl-(acyl 27.0 1.4E+02 0.0031 32.6 6.6 68 594-667 12-80 (306)
306 TIGR02964 xanthine_xdhC xanthi 26.9 3.1E+02 0.0068 29.4 8.9 26 293-318 99-124 (246)
307 TIGR03206 benzo_BadH 2-hydroxy 26.8 3.1E+02 0.0067 28.4 8.9 66 294-373 3-69 (250)
308 PRK06181 short chain dehydroge 26.8 1.3E+02 0.0028 31.7 6.1 66 595-667 2-68 (263)
309 PRK08053 sulfur carrier protei 26.6 1.4E+02 0.003 25.0 4.9 45 481-527 14-62 (66)
310 PRK12549 shikimate 5-dehydroge 26.6 2.9E+02 0.0062 30.3 8.7 45 294-351 127-171 (284)
311 PRK06483 dihydromonapterin red 26.5 1.1E+02 0.0023 31.8 5.2 62 594-667 2-64 (236)
312 PRK06483 dihydromonapterin red 26.4 2.7E+02 0.0059 28.7 8.4 25 294-318 2-27 (236)
313 PRK14106 murD UDP-N-acetylmura 26.4 2.2E+02 0.0047 33.1 8.3 70 294-385 5-75 (450)
314 PRK08264 short chain dehydroge 26.3 1.4E+02 0.003 30.9 6.1 60 594-667 6-67 (238)
315 PRK05884 short chain dehydroge 26.3 2.3E+02 0.0051 29.3 7.8 60 296-374 2-62 (223)
316 PRK06114 short chain dehydroge 26.3 1.5E+02 0.0032 31.2 6.4 68 594-667 8-76 (254)
317 COG0168 TrkG Trk-type K+ trans 26.3 1.6E+02 0.0035 35.1 7.2 69 201-271 403-481 (499)
318 PRK08762 molybdopterin biosynt 26.2 2.4E+02 0.0051 32.2 8.4 25 294-318 135-159 (376)
319 PF03793 PASTA: PASTA domain; 26.1 1.3E+02 0.0029 24.5 4.7 49 477-525 3-60 (63)
320 KOG1251 Serine racemase [Signa 26.1 2E+02 0.0044 31.0 6.9 55 354-418 150-205 (323)
321 PRK12827 short chain dehydroge 26.1 2.9E+02 0.0062 28.5 8.5 25 294-318 6-31 (249)
322 PRK12824 acetoacetyl-CoA reduc 26.1 3.4E+02 0.0073 27.9 9.0 24 295-318 3-27 (245)
323 PRK08589 short chain dehydroge 26.0 2.9E+02 0.0063 29.4 8.6 25 294-318 6-31 (272)
324 PF13241 NAD_binding_7: Putati 26.0 81 0.0018 28.8 3.7 35 293-340 6-40 (103)
325 PRK06138 short chain dehydroge 25.8 3.1E+02 0.0067 28.4 8.7 65 294-373 5-70 (252)
326 PF00072 Response_reg: Respons 25.7 3E+02 0.0065 24.3 7.5 93 337-438 4-98 (112)
327 PRK06949 short chain dehydroge 25.7 1.2E+02 0.0025 31.8 5.4 66 594-667 9-76 (258)
328 PRK09730 putative NAD(P)-bindi 25.6 1.5E+02 0.0032 30.7 6.2 67 595-667 2-69 (247)
329 PRK06123 short chain dehydroge 25.6 3.4E+02 0.0075 28.0 9.0 24 295-318 3-27 (248)
330 PRK06482 short chain dehydroge 25.6 1.5E+02 0.0033 31.5 6.4 63 595-667 3-66 (276)
331 TIGR00933 2a38 potassium uptak 25.5 4E+02 0.0086 30.6 10.0 41 199-241 105-145 (390)
332 PRK07904 short chain dehydroge 25.5 2.9E+02 0.0062 29.2 8.4 23 294-316 8-31 (253)
333 PRK10538 malonic semialdehyde 25.5 1.4E+02 0.003 31.3 5.9 62 596-667 2-64 (248)
334 PLN02260 probable rhamnose bio 25.5 5.4E+02 0.012 31.6 11.9 70 593-667 5-75 (668)
335 PRK07067 sorbitol dehydrogenas 25.3 1.6E+02 0.0034 30.9 6.4 64 594-667 6-70 (257)
336 PRK09135 pteridine reductase; 25.3 3.4E+02 0.0075 27.9 8.9 25 294-318 6-31 (249)
337 COG2242 CobL Precorrin-6B meth 25.2 6.9E+02 0.015 25.9 10.4 86 336-434 63-153 (187)
338 PF13478 XdhC_C: XdhC Rossmann 25.1 3E+02 0.0065 26.7 7.7 78 297-404 1-78 (136)
339 PRK06947 glucose-1-dehydrogena 25.0 1.6E+02 0.0034 30.7 6.2 67 595-667 3-70 (248)
340 PRK07985 oxidoreductase; Provi 24.9 1.3E+02 0.0029 32.7 5.8 69 594-667 49-118 (294)
341 KOG1201 Hydroxysteroid 17-beta 24.9 8E+02 0.017 27.3 11.5 41 292-346 36-77 (300)
342 PRK09134 short chain dehydroge 24.9 1.9E+02 0.004 30.5 6.8 68 594-667 9-77 (258)
343 PRK05854 short chain dehydroge 24.9 1.3E+02 0.0028 33.1 5.8 69 594-667 14-83 (313)
344 PRK08340 glucose-1-dehydrogena 24.9 2.9E+02 0.0063 29.0 8.3 40 296-349 2-42 (259)
345 COG2085 Predicted dinucleotide 24.8 1.8E+02 0.0039 30.6 6.3 41 296-349 3-43 (211)
346 PRK09072 short chain dehydroge 24.7 3.3E+02 0.0072 28.6 8.8 63 294-371 5-68 (263)
347 PRK08339 short chain dehydroge 24.7 3.3E+02 0.0071 28.9 8.7 41 295-349 9-50 (263)
348 PRK07453 protochlorophyllide o 24.7 3.1E+02 0.0067 30.1 8.8 42 294-349 6-48 (322)
349 PRK08217 fabG 3-ketoacyl-(acyl 24.6 3.3E+02 0.0071 28.1 8.6 42 294-349 5-47 (253)
350 PLN02572 UDP-sulfoquinovose sy 24.6 1.9E+02 0.0042 33.7 7.4 70 593-667 46-131 (442)
351 PRK12938 acetyacetyl-CoA reduc 24.6 3.7E+02 0.0081 27.8 9.0 24 295-318 4-28 (246)
352 PRK07060 short chain dehydroge 24.6 1.3E+02 0.0029 31.0 5.6 62 594-667 9-71 (245)
353 PRK08265 short chain dehydroge 24.5 3.5E+02 0.0076 28.5 8.9 63 294-373 6-69 (261)
354 PRK07063 short chain dehydroge 24.5 1.7E+02 0.0036 30.8 6.4 69 594-667 7-76 (260)
355 PRK05717 oxidoreductase; Valid 24.4 1.5E+02 0.0034 31.0 6.1 64 594-667 10-74 (255)
356 PRK08085 gluconate 5-dehydroge 24.4 3.3E+02 0.0073 28.4 8.7 42 294-349 9-51 (254)
357 KOG1052 Glutamate-gated kainat 24.4 1.7E+02 0.0036 36.0 7.1 52 226-277 383-434 (656)
358 PRK05653 fabG 3-ketoacyl-(acyl 24.4 1.5E+02 0.0031 30.6 5.8 66 594-667 5-72 (246)
359 PRK13394 3-hydroxybutyrate deh 24.4 3E+02 0.0065 28.7 8.3 42 294-349 7-49 (262)
360 TIGR03589 PseB UDP-N-acetylglu 24.3 3.5E+02 0.0076 29.9 9.1 78 295-387 5-83 (324)
361 PRK12939 short chain dehydroge 24.2 1.6E+02 0.0036 30.4 6.2 67 594-667 7-74 (250)
362 PRK08309 short chain dehydroge 24.2 3.3E+02 0.0072 27.6 8.1 39 296-348 2-40 (177)
363 PRK05565 fabG 3-ketoacyl-(acyl 24.2 1.5E+02 0.0032 30.6 5.8 66 594-667 5-73 (247)
364 PLN00016 RNA-binding protein; 24.2 2.5E+02 0.0053 31.8 8.0 65 592-661 50-122 (378)
365 PRK08862 short chain dehydroge 24.1 3.4E+02 0.0074 28.2 8.6 42 294-349 5-47 (227)
366 PRK07677 short chain dehydroge 24.1 3E+02 0.0066 28.7 8.2 39 296-348 3-42 (252)
367 cd01080 NAD_bind_m-THF_DH_Cycl 24.1 2.4E+02 0.0053 28.4 7.0 26 292-317 42-68 (168)
368 PLN02989 cinnamyl-alcohol dehy 24.0 1.4E+02 0.003 32.7 5.8 68 594-667 5-74 (325)
369 PRK07201 short chain dehydroge 24.0 5E+02 0.011 31.6 11.2 111 596-727 2-121 (657)
370 PRK07060 short chain dehydroge 24.0 3.3E+02 0.0071 28.0 8.4 73 294-385 9-84 (245)
371 TIGR00933 2a38 potassium uptak 23.9 1.7E+02 0.0037 33.6 6.6 41 221-261 345-389 (390)
372 PRK12749 quinate/shikimate deh 23.8 4.5E+02 0.0098 28.9 9.7 45 294-351 124-171 (288)
373 PRK08213 gluconate 5-dehydroge 23.8 1.7E+02 0.0038 30.6 6.3 67 594-667 12-79 (259)
374 PRK06197 short chain dehydroge 23.8 1.5E+02 0.0033 32.3 6.0 68 594-667 16-85 (306)
375 PLN02896 cinnamyl-alcohol dehy 23.7 2.1E+02 0.0046 31.8 7.3 66 594-667 10-76 (353)
376 PRK06172 short chain dehydroge 23.7 1.7E+02 0.0036 30.7 6.1 67 594-667 7-74 (253)
377 PRK12490 6-phosphogluconate de 23.7 7.8E+02 0.017 26.9 11.6 39 296-348 2-40 (299)
378 PRK08643 acetoin reductase; Va 23.7 1.6E+02 0.0035 30.8 6.0 65 595-667 3-69 (256)
379 PRK12746 short chain dehydroge 23.6 1.9E+02 0.0041 30.2 6.6 68 594-667 6-74 (254)
380 PRK05476 S-adenosyl-L-homocyst 23.5 2E+02 0.0043 33.6 7.1 26 293-318 211-236 (425)
381 PLN02240 UDP-glucose 4-epimera 23.5 5.4E+02 0.012 28.3 10.5 69 594-667 5-76 (352)
382 PRK02705 murD UDP-N-acetylmura 23.5 4.5E+02 0.0097 30.6 10.2 23 296-318 2-24 (459)
383 PRK07775 short chain dehydroge 23.4 3.4E+02 0.0074 28.9 8.6 25 294-318 10-35 (274)
384 PRK07825 short chain dehydroge 23.4 1.5E+02 0.0033 31.4 5.9 62 595-667 6-68 (273)
385 PF00070 Pyr_redox: Pyridine n 23.4 1.4E+02 0.0031 25.5 4.7 23 296-318 1-23 (80)
386 PRK08628 short chain dehydroge 23.4 1.7E+02 0.0036 30.8 6.1 67 593-667 6-73 (258)
387 PRK06463 fabG 3-ketoacyl-(acyl 23.4 3.6E+02 0.0077 28.2 8.6 62 294-374 7-69 (255)
388 PRK06180 short chain dehydroge 23.4 1.8E+02 0.0038 31.2 6.3 64 594-667 4-68 (277)
389 PF13738 Pyr_redox_3: Pyridine 23.3 1.1E+02 0.0024 30.8 4.5 35 593-630 166-200 (203)
390 PRK06200 2,3-dihydroxy-2,3-dih 23.3 1.7E+02 0.0038 30.8 6.2 64 594-667 6-70 (263)
391 PLN02662 cinnamyl-alcohol dehy 23.2 1.2E+02 0.0026 33.1 5.1 68 594-667 4-73 (322)
392 PRK07889 enoyl-(acyl carrier p 23.2 1.7E+02 0.0036 31.0 6.1 66 594-667 7-75 (256)
393 PRK07825 short chain dehydroge 23.1 3.3E+02 0.0072 28.8 8.4 60 294-371 5-65 (273)
394 PRK06123 short chain dehydroge 23.1 1.8E+02 0.0039 30.2 6.2 67 595-667 3-70 (248)
395 PRK05693 short chain dehydroge 23.0 3.1E+02 0.0067 29.1 8.2 59 295-373 2-61 (274)
396 PRK12743 oxidoreductase; Provi 22.9 1.9E+02 0.004 30.5 6.4 67 595-667 3-70 (256)
397 PRK06057 short chain dehydroge 22.9 3.1E+02 0.0067 28.7 8.0 60 294-372 7-67 (255)
398 PRK12826 3-ketoacyl-(acyl-carr 22.9 1.8E+02 0.004 30.0 6.3 67 594-667 6-73 (251)
399 PRK08594 enoyl-(acyl carrier p 22.9 3.5E+02 0.0075 28.7 8.4 25 294-318 7-34 (257)
400 cd01078 NAD_bind_H4MPT_DH NADP 22.8 1.3E+02 0.0029 30.5 5.0 65 594-667 28-94 (194)
401 PLN02657 3,8-divinyl protochlo 22.7 1.4E+02 0.003 34.2 5.6 69 593-667 59-129 (390)
402 PRK06701 short chain dehydroge 22.6 1.7E+02 0.0038 31.7 6.2 67 595-667 47-114 (290)
403 PRK07814 short chain dehydroge 22.5 1.8E+02 0.0038 30.8 6.1 67 594-667 10-77 (263)
404 PRK07035 short chain dehydroge 22.5 3.8E+02 0.0082 27.9 8.6 42 294-349 8-50 (252)
405 PRK07688 thiamine/molybdopteri 22.4 6E+02 0.013 28.7 10.5 34 593-629 23-57 (339)
406 TIGR02415 23BDH acetoin reduct 22.4 1.8E+02 0.0038 30.3 6.0 66 595-667 1-67 (254)
407 cd01487 E1_ThiF_like E1_ThiF_l 22.4 3.6E+02 0.0077 27.2 7.9 23 296-318 1-23 (174)
408 CHL00200 trpA tryptophan synth 22.3 1E+03 0.022 25.8 15.0 126 296-440 93-231 (263)
409 TIGR01829 AcAcCoA_reduct aceto 22.2 3.9E+02 0.0085 27.3 8.6 22 297-318 3-25 (242)
410 PRK05854 short chain dehydroge 22.2 4E+02 0.0087 29.2 9.0 43 293-349 13-56 (313)
411 PRK11908 NAD-dependent epimera 22.2 5.8E+02 0.013 28.2 10.4 62 595-667 2-65 (347)
412 PRK07097 gluconate 5-dehydroge 22.1 1.8E+02 0.004 30.7 6.2 67 594-667 10-77 (265)
413 PF00342 PGI: Phosphoglucose i 22.0 3.9E+02 0.0085 31.8 9.3 65 276-350 76-145 (486)
414 COG0168 TrkG Trk-type K+ trans 22.0 3.3E+02 0.0073 32.5 8.7 62 206-270 183-251 (499)
415 PF03721 UDPG_MGDP_dh_N: UDP-g 22.0 1.9E+02 0.0041 29.6 5.9 40 296-349 2-41 (185)
416 PF14544 DUF4443: Domain of un 21.9 1.8E+02 0.004 27.3 5.1 60 470-529 15-88 (108)
417 PRK11880 pyrroline-5-carboxyla 21.9 2.4E+02 0.0051 30.2 7.0 43 296-349 4-46 (267)
418 PRK07666 fabG 3-ketoacyl-(acyl 21.9 1.8E+02 0.0038 30.1 5.9 67 594-667 7-74 (239)
419 TIGR00872 gnd_rel 6-phosphoglu 21.8 3E+02 0.0064 30.3 7.8 67 296-387 2-68 (298)
420 PF00072 Response_reg: Respons 21.8 4.9E+02 0.011 22.8 8.1 23 295-317 44-69 (112)
421 PF01113 DapB_N: Dihydrodipico 21.8 2E+02 0.0044 27.2 5.7 22 296-317 2-24 (124)
422 PRK08339 short chain dehydroge 21.8 1.7E+02 0.0038 31.0 5.9 67 594-667 8-76 (263)
423 PRK06843 inosine 5-monophospha 21.8 2.2E+02 0.0048 33.0 6.9 143 293-456 138-296 (404)
424 TIGR01830 3oxo_ACP_reduc 3-oxo 21.7 3.4E+02 0.0074 27.7 8.0 22 297-318 1-23 (239)
425 TIGR01181 dTDP_gluc_dehyt dTDP 21.7 3.2E+02 0.0069 29.3 8.0 74 296-387 1-82 (317)
426 PRK06198 short chain dehydroge 21.6 4.4E+02 0.0095 27.5 8.9 25 294-318 6-31 (260)
427 PRK07831 short chain dehydroge 21.6 3.8E+02 0.0082 28.2 8.4 42 293-348 16-59 (262)
428 PRK08217 fabG 3-ketoacyl-(acyl 21.5 1.7E+02 0.0036 30.3 5.6 66 594-667 5-72 (253)
429 PTZ00075 Adenosylhomocysteinas 21.5 2.4E+02 0.0052 33.4 7.2 27 292-318 252-278 (476)
430 PRK07109 short chain dehydroge 21.5 1.6E+02 0.0035 32.8 5.7 66 594-667 8-75 (334)
431 PRK05786 fabG 3-ketoacyl-(acyl 21.5 1.8E+02 0.0038 30.0 5.7 66 593-667 4-71 (238)
432 PRK06482 short chain dehydroge 21.5 4.1E+02 0.0088 28.2 8.7 75 295-386 3-84 (276)
433 PRK09599 6-phosphogluconate de 21.4 1.1E+03 0.023 25.8 12.3 40 296-349 2-41 (301)
434 COG1893 ApbA Ketopantoate redu 21.3 4.7E+02 0.01 29.0 9.3 72 296-389 2-77 (307)
435 PLN02494 adenosylhomocysteinas 21.3 2.3E+02 0.0049 33.6 6.9 26 293-318 253-278 (477)
436 PRK08277 D-mannonate oxidoredu 21.3 3.7E+02 0.0081 28.5 8.4 65 294-372 10-75 (278)
437 PRK06200 2,3-dihydroxy-2,3-dih 21.2 4E+02 0.0087 28.0 8.5 42 294-349 6-48 (263)
438 PRK07576 short chain dehydroge 21.1 1.8E+02 0.004 30.8 5.9 67 594-667 9-76 (264)
439 PRK07792 fabG 3-ketoacyl-(acyl 21.1 3.9E+02 0.0085 29.2 8.6 26 293-318 11-37 (306)
440 TIGR03013 EpsB_2 sugar transfe 21.1 9.7E+02 0.021 27.8 12.3 21 294-315 124-144 (442)
441 PRK08642 fabG 3-ketoacyl-(acyl 21.1 4.5E+02 0.0098 27.2 8.8 24 295-318 6-30 (253)
442 PRK07774 short chain dehydroge 21.1 1.7E+02 0.0037 30.4 5.6 67 594-667 6-73 (250)
443 PLN02653 GDP-mannose 4,6-dehyd 21.1 2.4E+02 0.0051 31.2 7.0 69 594-667 6-78 (340)
444 PRK06077 fabG 3-ketoacyl-(acyl 21.0 4.7E+02 0.01 27.0 8.9 25 294-318 6-31 (252)
445 PRK08219 short chain dehydroge 21.0 1.9E+02 0.0041 29.4 5.8 61 595-667 4-65 (227)
446 cd00401 AdoHcyase S-adenosyl-L 20.9 2.7E+02 0.0058 32.4 7.4 42 292-347 200-241 (413)
447 TIGR01963 PHB_DH 3-hydroxybuty 20.9 3.8E+02 0.0083 27.7 8.2 60 296-369 3-63 (255)
448 PRK03612 spermidine synthase; 20.9 6.1E+02 0.013 30.4 10.7 67 593-666 297-369 (521)
449 PRK05650 short chain dehydroge 20.8 2E+02 0.0044 30.5 6.1 65 596-667 2-67 (270)
450 PRK10750 potassium transporter 20.7 4.3E+02 0.0094 31.4 9.3 33 206-241 191-223 (483)
451 PRK09291 short chain dehydroge 20.6 1.6E+02 0.0034 30.8 5.2 66 595-667 3-69 (257)
452 PRK08936 glucose-1-dehydrogena 20.6 2.2E+02 0.0048 29.9 6.4 68 594-667 7-75 (261)
453 PF02826 2-Hacid_dh_C: D-isome 20.6 1.3E+02 0.0028 30.4 4.3 36 593-631 35-70 (178)
454 PRK07102 short chain dehydroge 20.5 1.8E+02 0.004 30.2 5.6 64 595-667 2-69 (243)
455 PRK08618 ornithine cyclodeamin 20.5 6E+02 0.013 28.3 10.0 46 294-351 127-172 (325)
456 PRK12384 sorbitol-6-phosphate 20.4 1.8E+02 0.004 30.4 5.7 68 595-667 3-71 (259)
457 PLN02253 xanthoxin dehydrogena 20.4 2.2E+02 0.0048 30.3 6.4 66 593-667 17-84 (280)
458 PRK12827 short chain dehydroge 20.4 1.6E+02 0.0035 30.4 5.2 68 594-667 6-77 (249)
459 PRK06196 oxidoreductase; Provi 20.4 3.3E+02 0.0071 29.8 7.9 62 294-373 26-88 (315)
460 PRK08589 short chain dehydroge 20.4 2.1E+02 0.0045 30.6 6.1 66 594-667 6-72 (272)
461 cd06575 PASTA_Pbp2x-like_2 PAS 20.4 2.2E+02 0.0047 21.6 4.7 48 477-525 2-52 (54)
462 PRK08642 fabG 3-ketoacyl-(acyl 20.3 2.6E+02 0.0057 29.0 6.8 65 594-667 5-70 (253)
463 PRK06953 short chain dehydroge 20.3 1.7E+02 0.0037 30.0 5.3 60 595-667 2-62 (222)
464 PF01073 3Beta_HSD: 3-beta hyd 20.3 2.3E+02 0.0049 30.9 6.4 71 301-387 5-75 (280)
465 PRK06196 oxidoreductase; Provi 20.3 1.7E+02 0.0038 32.0 5.6 63 594-667 26-89 (315)
466 PRK05867 short chain dehydroge 20.2 2E+02 0.0042 30.2 5.8 67 594-667 9-76 (253)
467 PRK09072 short chain dehydroge 20.2 2.2E+02 0.0049 29.9 6.3 65 594-667 5-71 (263)
468 PRK05875 short chain dehydroge 20.2 2E+02 0.0043 30.6 5.9 69 594-667 7-76 (276)
469 PRK06944 sulfur carrier protei 20.2 1.9E+02 0.004 23.9 4.5 45 481-527 14-61 (65)
470 PRK07453 protochlorophyllide o 20.2 2.3E+02 0.005 31.1 6.6 66 594-667 6-73 (322)
471 PRK15204 undecaprenyl-phosphat 20.1 1.1E+03 0.024 27.9 12.5 23 294-316 146-168 (476)
472 PRK07478 short chain dehydroge 20.0 2E+02 0.0043 30.1 5.8 67 594-667 6-73 (254)
No 1
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=100.00 E-value=4.7e-34 Score=329.74 Aligned_cols=425 Identities=16% Similarity=0.215 Sum_probs=318.8
Q ss_pred eEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHcC
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAA 375 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA~ 375 (856)
||+|||+|..|..++++|...+. .+++ .+.+++..+.+.+. .+.+++.|++++.++|++++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-------------~v~v-id~~~~~~~~~~~~-----~~~~~~~gd~~~~~~l~~~~ 62 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-------------DVTV-IDTDEERLRRLQDR-----LDVRTVVGNGSSPDVLREAG 62 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-------------cEEE-EECCHHHHHHHHhh-----cCEEEEEeCCCCHHHHHHcC
Confidence 89999999999999999987654 4554 47777777766442 26889999999999999999
Q ss_pred ccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCc---HHHH--HhcCCCeEEehHHHHHHHHHH
Q 003021 376 ANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNT---CELL--KSLSGLKVEPVENVASKLFVQ 450 (856)
Q Consensus 376 v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~---~~~l--~~~g~~~Vi~~~~i~~~lLaq 450 (856)
+++|+.+|++.++ | +. ++.+++.+|+++ +..++|+++.++++ ..++ +.+|++.|+.|+.+++..|++
T Consensus 63 ~~~a~~vi~~~~~-~----~~-n~~~~~~~r~~~--~~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~ 134 (453)
T PRK09496 63 AEDADLLIAVTDS-D----ET-NMVACQIAKSLF--GAPTTIARVRNPEYAEYDKLFSKEALGIDLLISPELLVAREIAR 134 (453)
T ss_pred CCcCCEEEEecCC-h----HH-HHHHHHHHHHhc--CCCeEEEEECCccccchhhhhhhhcCCccEEECHHHHHHHHHHH
Confidence 9999987766543 2 34 444556667766 77889999988877 3344 778999999999999999999
Q ss_pred HHccCCHHHHHHHHhcccC-----cEEEEecCCCCCCCCHHHHHcc-CC-ceEEEEEEECCEEEECCCCCceecCCCEEE
Q 003021 451 CSRQKGLIKIYRHLLNYRK-----NIFNLWSFPNLAGIKYRQLRRG-FQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKIL 523 (856)
Q Consensus 451 ~~~~Pgl~~v~~~Ll~f~g-----~E~~v~~~p~l~G~tf~el~~~-~~-~aivIGI~r~G~~~lnP~~d~vI~~gD~Li 523 (856)
.+..|+...+ +.+.+ .|+.+.+.+++.|+++.|+..+ .+ ++.++|+.|+|+. +.|++++.|++||+|+
T Consensus 135 ~l~~~~~~~~----~~~~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~r~~~~-~~p~~~~~l~~gD~l~ 209 (453)
T PRK09496 135 LIEYPGALDV----EEFADGRVQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVAIFRGGRL-IIPRGDTVIEAGDEVY 209 (453)
T ss_pred HhcCCCceEe----eeecCCeEEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEEEEECCEE-EcCCCCcEecCCCEEE
Confidence 9999997765 33333 3455556678999999999876 44 7999999999984 6899999999999999
Q ss_pred EEecCCCCCCccccccccccccccchhhhhcccCCCCchHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCeEEEEecc
Q 003021 524 FIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLGPKERILLLGWR 603 (856)
Q Consensus 524 vIa~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~vLI~Gw~ 603 (856)
++++.++..+ + . +.. ..+ ....+|++|||||
T Consensus 210 v~g~~~~l~~-------------~--------------------~----~~~-~~~-----------~~~~~~iiIiG~G 240 (453)
T PRK09496 210 FIGAREHIRA-------------V--------------------M----SEF-GRL-----------EKPVKRVMIVGGG 240 (453)
T ss_pred EEeCHHHHHH-------------H--------------------H----HHh-Ccc-----------CCCCCEEEEECCC
Confidence 9999764321 0 0 011 111 1246999999999
Q ss_pred ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhccccccccccCCCCCCc
Q 003021 604 PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPL 683 (856)
Q Consensus 604 r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a~i~i~~a~~~d~~~~~ 683 (856)
+.+..+++.|.+ .|..+++++.. +++.+.+.+ ...+ +.++.||+++.++|++++++ + ++
T Consensus 241 ~~g~~l~~~L~~---~~~~v~vid~~--~~~~~~~~~----~~~~--~~~i~gd~~~~~~L~~~~~~--~---a~----- 299 (453)
T PRK09496 241 NIGYYLAKLLEK---EGYSVKLIERD--PERAEELAE----ELPN--TLVLHGDGTDQELLEEEGID--E---AD----- 299 (453)
T ss_pred HHHHHHHHHHHh---CCCeEEEEECC--HHHHHHHHH----HCCC--CeEEECCCCCHHHHHhcCCc--c---CC-----
Confidence 999999999974 47789999873 344444332 1223 35699999999999999887 2 34
Q ss_pred EEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEecccchhHhhhcCCCcceeehhhHHHHHHHHHh
Q 003021 684 SIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVV 763 (856)
Q Consensus 684 siIILsd~d~~~~~~~~aDa~~l~t~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~ag~~~d~I~S~~iis~vlAq~a 763 (856)
.+++++++ |..|+++.+.+|.+ +.+ +||+++.++++.+.++.+|++ .+|.+..+.+..+++..
T Consensus 300 ~vi~~~~~----------~~~n~~~~~~~~~~----~~~--~ii~~~~~~~~~~~~~~~g~~-~vi~p~~~~~~~~~~~~ 362 (453)
T PRK09496 300 AFIALTND----------DEANILSSLLAKRL----GAK--KVIALVNRPAYVDLVEGLGID-IAISPRQATASEILRHV 362 (453)
T ss_pred EEEECCCC----------cHHHHHHHHHHHHh----CCC--eEEEEECCcchHHHHHhcCCC-EEECHHHHHHHHHHHHh
Confidence 67777653 37899988888885 333 899999999999999998754 55566677788888888
Q ss_pred hcccHHHHHHHHHc-cCCCeEEEEeccccccCCCCCCHHHHHHHHHhcCcEEEEEEECCeEEeCCCCCCCCccccCCCEE
Q 003021 764 ENNELNEVWKDILN-AEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSL 842 (856)
Q Consensus 764 ~n~~l~~v~~eLl~-~eG~Ei~v~~~~~~~~~g~~~sF~~L~~~a~~~g~ilIG~~~~~~~iiNP~~k~~~~~l~~gD~L 842 (856)
..|.+..++....+ .+..|+.+.+.+.+ .+.++.++ ...+++.++|+.++++. ++|++ .+++++||.|
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~~----~g~~l~el---~l~~~~~i~~i~r~~~~-~~p~~---~~~l~~gD~l 431 (453)
T PRK09496 363 RRGDIVAVHSLRRGAAEAIEAVAHETSKV----VGKPLKDL---KLPKGVLIGAIVRGGEV-IIPTG---DTVIEPGDHV 431 (453)
T ss_pred hccchhhhhhhcCCcEEEEEEEeCCCChh----ccCCHHHc---CCCCCCEEEEEEECCEE-EcCCC---CcEECCCCEE
Confidence 88887766653221 12335555544444 34555555 33469999999998887 78864 3599999999
Q ss_pred EEEecCCC
Q 003021 843 IVISELEG 850 (856)
Q Consensus 843 IVi~~~e~ 850 (856)
+++++.+.
T Consensus 432 ~v~~~~~~ 439 (453)
T PRK09496 432 IVFVLDKK 439 (453)
T ss_pred EEEEcCcc
Confidence 99998876
No 2
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=100.00 E-value=5.5e-35 Score=281.88 Aligned_cols=205 Identities=56% Similarity=0.846 Sum_probs=189.1
Q ss_pred cCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCcHHHHHhcCCCeEEehHHHHHHHHHHHHccCCHH
Q 003021 379 ARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLI 458 (856)
Q Consensus 379 A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~~~~l~~~g~~~Vi~~~~i~~~lLaq~~~~Pgl~ 458 (856)
|++||||++++|++++|+++++++||++.+.++...|+|||+.|.+++++++..||..|.+++++++++|+||++|||++
T Consensus 1 ARaIIiL~~k~d~ye~Da~a~lsVLaL~~v~e~~~g~vIVE~S~~~t~~LlKsv~G~~VetV~dv~skL~VQCsRQ~GL~ 80 (206)
T PF06241_consen 1 ARAIIILAEKEDRYESDADAFLSVLALQPVKEGLSGHVIVEVSDSDTEQLLKSVSGLKVETVHDVISKLMVQCSRQPGLA 80 (206)
T ss_pred CceEEEeCCCCCcchhhHHHHHHHhhcccccccCcccEEEEecCCChHHHHHhhcCceeeeHHHHHHHHHHHhccCccHH
Confidence 78999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCcEEEEecCCCCCCCCHHHHHccCCceEEEEEEECCEEEECCCCCceecCCCEEEEEecCCCCCCccccc
Q 003021 459 KIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLAS 538 (856)
Q Consensus 459 ~v~~~Ll~f~g~E~~v~~~p~l~G~tf~el~~~~~~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa~~~~~~~p~~~~ 538 (856)
.+|++||+|+.++||+..+|+|.|++|.|+++.|+++++||+.|+|++.+||++|+++++||+++|||+.++. +++..|
T Consensus 81 ~Iy~~iL~~~k~vf~l~~~P~L~Gm~y~dvr~~Fpdav~CGv~r~GkI~fhP~Dd~vL~e~DklLvIa~~~~~-~~~~~~ 159 (206)
T PF06241_consen 81 QIYEDILGFEKNVFNLKRWPQLDGMKYRDVRRSFPDAVVCGVKRDGKIVFHPDDDYVLREGDKLLVIAPVNGK-RPQTAY 159 (206)
T ss_pred HHHHHHhCCCCcEEEEecCcccCCcCHHHHHhcCCcceeeeeeeCCeeEECCCCCceeecCCEEEEEeecCCc-cceEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 667777
Q ss_pred cccccccccchhhhhcccCCCCchHHHHHHHHHHhhhhcCCCCCCCCCCCCCCC
Q 003021 539 SNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLG 592 (856)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~i~~~p~~~~~~~~~~~~~ 592 (856)
.++ +.+++...+ +..+.++|..++|++.++++|.++++|++|+..+
T Consensus 160 ~~v-----~~~n~~~~~---~~~~~~~e~~k~rl~nivkrp~kslsk~Sd~~lg 205 (206)
T PF06241_consen 160 PSV-----RMENITSPE---DVRKHAFELWKTRLENIVKRPNKSLSKGSDWSLG 205 (206)
T ss_pred ccc-----ccccccCCC---chhhhhhhhhHhHHHHHHhCcccccccccccccC
Confidence 766 334444433 3467788999999999999999999999987654
No 3
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-27 Score=262.86 Aligned_cols=582 Identities=14% Similarity=0.202 Sum_probs=377.7
Q ss_pred CCHHHHHHHHHHhhhcccccccc---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccCCCeEE
Q 003021 223 QSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQ-MQVLESDHII 298 (856)
Q Consensus 223 ~s~~dalw~~~~~vt~st~g~gd---~T~~gRl~~v~l~l~Gi~~fa~li~~it~~l~~~~~~lr~G~~-~~v~~~~HiI 298 (856)
.+++++.| |.++||+|+|||| .|..||+|+++++++|+.+|+..++-+.+.+.++- +-|.+ ..+..+.|||
T Consensus 287 ltyw~cvy--fl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~---kyggeyk~ehgkkhiv 361 (1103)
T KOG1420|consen 287 LTYWECVY--FLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRK---KYGGEYKAEHGKKHIV 361 (1103)
T ss_pred chhhheee--eeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHcccc---ccCceeehhcCCeeEE
Confidence 57899999 9999999999999 78899999999999999999998888888887643 23432 2355799999
Q ss_pred EEcCCc--hHHHHHHHHHhcCcccccccccccCcceEEEEeCC-ChhHHHHHHHhhccccCCceEEEecCCCHHHHHHcC
Q 003021 299 VCGVNS--HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL-PRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAA 375 (856)
Q Consensus 299 I~G~~~--~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~-~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA~ 375 (856)
|||.-. ....+++.+...+.. .-+-.||.|-.. +.-++|.+..+ .+..+.+..|.-.++-+|.|+.
T Consensus 362 vcghityesvshflkdflhedrd--------dvdvevvflhr~~pdleleglfkr---hft~veffqgtvmnp~dl~rvk 430 (1103)
T KOG1420|consen 362 VCGHITYESVSHFLKDFLHEDRD--------DVDVEVVFLHRISPDLELEGLFKR---HFTQVEFFQGTVMNPHDLARVK 430 (1103)
T ss_pred EecceeHHHHHHHHHHHhhcccc--------ccceEEEEEecCCCCcchHHHHhh---heeeEEEecccccChhhhhhee
Confidence 999764 677788887765442 112467777654 45678887664 3445566667667899999999
Q ss_pred ccccCeEEEecCCC--CCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCcHHHHH------hcCCCeEEehHHHHHHH
Q 003021 376 ANKARAIIILPTKG--DRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLK------SLSGLKVEPVENVASKL 447 (856)
Q Consensus 376 v~~A~aVIIl~~~~--D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~~~~l~------~~g~~~Vi~~~~i~~~l 447 (856)
++.|++.+|++++. ||+.+|+.++..++++++.. +++++|+++-.-.|..++- -..||.||+..++.-..
T Consensus 431 i~~adaclvlankyc~dpdaedaanimrvisiknys--~dirvi~qlmqyhnkayllnipswdwk~gddviclaelklgf 508 (1103)
T KOG1420|consen 431 IESADACLVLANKYCADPDAEDAANIMRVISIKNYS--PDIRVITQLMQYHNKAYLLNIPSWDWKEGDDVICLAELKLGF 508 (1103)
T ss_pred ccccceeeeecccccCCCChhhhhhheEEEEeccCC--CchhHHHHHHHhhchheeecCCCcccccCCceEEehhhhhhh
Confidence 99999999999973 77788999999999999988 8999988776666665532 23467899999999999
Q ss_pred HHHHHccCCHHHHHHHHhcc-------------------cCcEEEEecC-CCCCCCCHHHHHcc-CC--ceEEEEEEE--
Q 003021 448 FVQCSRQKGLIKIYRHLLNY-------------------RKNIFNLWSF-PNLAGIKYRQLRRG-FQ--EAVVCGLYR-- 502 (856)
Q Consensus 448 Laq~~~~Pgl~~v~~~Ll~f-------------------~g~E~~v~~~-p~l~G~tf~el~~~-~~--~aivIGI~r-- 502 (856)
+||++..||.+.++.+|+.. .|+|.|.... |.|+|++|.++... |. +.++++|.-
T Consensus 509 iaqsclapgfstmmanlfamrsfktsp~~~~w~ndylrg~gmemyte~lsp~f~g~sfp~a~elcf~klkllllaie~k~ 588 (1103)
T KOG1420|consen 509 IAQSCLAPGFSTMMANLFAMRSFKTSPEEDTWQNDYLRGVGMEMYTEYLSPAFVGLSFPTACELCFVKLKLLLLAIEYKD 588 (1103)
T ss_pred hHHHhhcccHHHHHHHHHHHHhccCCcccchhHHHHHhhcchhHhhhhcCHhhcCCchHHHHHHHHHHHHHhheeeeecc
Confidence 99999999999999988752 2478888775 47999999986554 33 567788852
Q ss_pred ----CCEEEECCCCCceecCCCEEEEEecCCCCCCccccc-----ccccccc----------------ccchhhhhccc-
Q 003021 503 ----NGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLAS-----SNVANRM----------------NISQHLKVLEN- 556 (856)
Q Consensus 503 ----~G~~~lnP~~d~vI~~gD~LivIa~~~~~~~p~~~~-----~~~~~~~----------------~~~~~~~~~~~- 556 (856)
+.++.+||.+..+|++|..-++||.+.+..+..--| +|.+... +++.+-++..+
T Consensus 589 een~es~i~inpg~h~kiq~~tqgffiaqsadevkraffyckachddikd~~likkckckn~k~~q~~~ls~~~k~~ngg 668 (1103)
T KOG1420|consen 589 EENRESRILINPGNHLKIQEGTQGFFIAQSADEVKRAFFYCKACHDDIKDPKLIKKCKCKNLKDEQPSTLSPKKKQRNGG 668 (1103)
T ss_pred ccCccceeEeCCCCCceeccCCceEEEecchHHHHHHHhhHHhhhhcccCHHHHHhcCCCcccccCchhcCccccCCCCC
Confidence 356889999999999999999999986654421100 1110000 00000000000
Q ss_pred CCCCchHHHHHHHHHHhhhhcCCCCC------------CCCCC----------------------CCCCCCCCeEEEEec
Q 003021 557 NSDSTSYAIELVNARLELIAKRPSKP------------GSKAT----------------------DGNLGPKERILLLGW 602 (856)
Q Consensus 557 ~~~~~~~~~e~~~~~~~~i~~~p~~~------------~~~~~----------------------~~~~~~~~~vLI~Gw 602 (856)
....+...+. ...+.+... .+|.+ .++.-..+||++|=+
T Consensus 669 ~k~~p~~sp~-------~~r~~ts~~~g~~~~~~f~~~~mkydstgmfhwcp~k~ledcil~r~qaamtvlnghvvvclf 741 (1103)
T KOG1420|consen 669 MKNSPNTSPK-------LMRHDTSLIPGNDQIDNFDSHVMKYDSTGMFHWCPPKELEDCILTRSQAAMTVLNGHVVVCLF 741 (1103)
T ss_pred ccCCCCCCHH-------HhcCCcccCCCCcchhhhhhhhhccccccceeecCchhHHHHhhhhhHhhheeecCcEEEEEe
Confidence 0000000000 000000000 00100 112345789999999
Q ss_pred cccHHHH------HHHHhccc---CCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhccccccc
Q 003021 603 RPDVVEM------IEEYDNYL---GPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQN 673 (856)
Q Consensus 603 ~r~~~~l------i~eL~~~~---~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a~i~i~~ 673 (856)
+..-..+ +.-|.+.. -.-.+|+++....--.|+= + ....++.+.+ ..|.|.++..|+..+|+
T Consensus 742 ad~dspliglrnlvmplrasnfhyhelkhvvivgsieylrrew--k--tl~nlpkisi--lngsplsradlravnin--- 812 (1103)
T KOG1420|consen 742 ADVDSPLIGLRNLVMPLRASNFHYHELKHVVIVGSIEYLRREW--K--TLHNLPKISI--LNGSPLSRADLRAVNIN--- 812 (1103)
T ss_pred cCCCCchhhhhhheeeccccccchhheeeEEEEccHHHHHHHH--H--HHhCCCceee--cCCCCCchhhhhhcccc---
Confidence 8754333 33332210 1123577776632211110 0 0123555555 99999999999999999
Q ss_pred cccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhh--hC-----------------CC------------
Q 003021 674 SFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNK--LG-----------------VK------------ 722 (856)
Q Consensus 674 a~~~d~~~~~siIILsd~d~~~~~~~~aDa~~l~t~L~~r~l~~~--~g-----------------~~------------ 722 (856)
-+| .++||+-.-...+|+.-+|.+.|+..|.+|.++=+ .| .+
T Consensus 813 --lcd-----mcvilsa~vpn~ddttladkeailaslnikamqfddtigvl~~r~q~fd~~ssp~gspi~lq~~g~~~g~ 885 (1103)
T KOG1420|consen 813 --LCD-----MCVILSANVPNIDDTTLADKEAILASLNIKAMQFDDTIGVLQARSQGFDPPSSPDGSPIHLQQPGITTGV 885 (1103)
T ss_pred --ccc-----eeEEEecCCCCCCCcccccHHHHHhhccceeeeeccceeeeeccCCCCCCCCCCCCCCeEEecCCccccc
Confidence 355 68888743223468889999999999999876422 11 00
Q ss_pred cceEEEEEecccchhHhhhcCCCc---ceeehh----------hHHHHHHHHHh----------------hcccHHHHHH
Q 003021 723 VQNLVAEIVDSKLGKQIARNKPSL---TYIAAE----------EIMSLVTAQVV----------------ENNELNEVWK 773 (856)
Q Consensus 723 ~~~IIaEi~~~~~~~~l~~ag~~~---d~I~S~----------~iis~vlAq~a----------------~n~~l~~v~~ 773 (856)
++.+|+|+..+.|.+.+.+-..++ +.-++. .++..+|.... ..|+++.++.
T Consensus 886 nvpmitelvndsnvqfldqdddddpdtelyltqpfacgtafavsvldslmsttyfndnaltlirtlvtggatpelelila 965 (1103)
T KOG1420|consen 886 NVPMITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSTTYFNDNALTLIRTLVTGGATPELELILA 965 (1103)
T ss_pred CchhhhhhhccccceecccCCCCCCCceeEecCccccchhhHHHHHHHHhhhceecchHHHHHHHHHhCCCChhhHHHHh
Confidence 257999999999988776543211 111111 11122222222 3344444443
Q ss_pred HHHcc-CC------------C---eEEEEeccccccCCCCCCHHHHHHHHH-hcCcEEEEEEEC------------CeEE
Q 003021 774 DILNA-EG------------D---EIYVKDISLYMKEGENPSFFELSERAH-LRREVAIGYVKD------------NKKV 824 (856)
Q Consensus 774 eLl~~-eG------------~---Ei~v~~~~~~~~~g~~~sF~~L~~~a~-~~g~ilIG~~~~------------~~~i 824 (856)
|=.+- +| + +|.+.+ ..|.+.|.+-+|+++.-.|. ..|...||..|- .-++
T Consensus 966 egaglrggystpetlsnrdrcrvaqisl~d-gp~a~~g~~g~ygdlf~~alk~ygmlciglyrlrd~~~s~~~s~kryvi 1044 (1103)
T KOG1420|consen 966 EGAGLRGGYSTPETLSNRDRCRVAQISLLD-GPFADLGDGGCYGDLFCKALKTYGMLCIGLYRLRDAHLSTSQSTKRYVI 1044 (1103)
T ss_pred ccccccCCCCChhhhccccceeeeeeeeec-CchhhhccCCchHHHHHHHHHHhCceeEEEeeeeccccCcchhhceeEe
Confidence 21110 11 0 122222 22344567889999988774 679999998762 2378
Q ss_pred eCCCCCCCCccccCCCEEEEEecCC
Q 003021 825 INPVPKSEPLSLTLTDSLIVISELE 849 (856)
Q Consensus 825 iNP~~k~~~~~l~~gD~LIVi~~~e 849 (856)
.||| .++.+.+.|.+.|+-..+
T Consensus 1045 tnpp---~ef~l~ptd~vfvlmqfd 1066 (1103)
T KOG1420|consen 1045 TNPP---YEFELVPTDLVFVLMQFD 1066 (1103)
T ss_pred cCCc---hhheecccceEEEEEeeC
Confidence 8996 358999999999986543
No 4
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.95 E-value=2.3e-26 Score=258.67 Aligned_cols=228 Identities=18% Similarity=0.298 Sum_probs=179.7
Q ss_pred HHHHHHHhhhhhhcC----CCCCHHHHHHHHHHhhhcccccccc---CCcchhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 003021 206 SFVVFGGFLFFKFRD----ETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTM-TEQFR 277 (856)
Q Consensus 206 ~iv~~g~~l~~~~eg----~~~s~~dalw~~~~~vt~st~g~gd---~T~~gRl~~v~l~l~Gi~~fa~li~~i-t~~l~ 277 (856)
.+++.|.+.++++++ ...+|.|||| |+++|++|+|||| .|..||++++++++.|+.+|++.++.+ .+.+.
T Consensus 146 ~l~~~~~~g~~~~~~~f~~~~~s~~dA~y--~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i~ 223 (393)
T PRK10537 146 SLLFYSTFGALYLGDGFSPPIESLSTAFY--FSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVIR 223 (393)
T ss_pred HHHHHHHHHHHHHccccCcCCCCHHHHHH--hhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554555542 3479999999 8889999999998 456799999999999999998887754 55777
Q ss_pred HHHHHHHhcccccccCCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCC
Q 003021 278 NNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNH 357 (856)
Q Consensus 278 ~~~~~lr~G~~~~v~~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~ 357 (856)
+++++..+++......+||+||||||+.+..++++|.+.+. ++|++ |.++. ++... .+
T Consensus 224 ~~l~~~~~~~~~~~~~k~HvII~G~g~lg~~v~~~L~~~g~-------------~vvVI-d~d~~--~~~~~------~g 281 (393)
T PRK10537 224 GNLKRLVKGRISHMHRKDHFIICGHSPLAINTYLGLRQRGQ-------------AVTVI-VPLGL--EHRLP------DD 281 (393)
T ss_pred HHHHHHHHhhhhhcccCCeEEEECCChHHHHHHHHHHHCCC-------------CEEEE-ECchh--hhhcc------CC
Confidence 77766544442334458999999999999999999987544 45554 43322 22211 27
Q ss_pred ceEEEecCCCHHHHHHcCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCcHHHHHhcCCCeE
Q 003021 358 IDILSKSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKV 437 (856)
Q Consensus 358 ~~Vi~~~~~~~e~L~rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~~~~l~~~g~~~V 437 (856)
.++++||++++++|++|++++|++++++.++ |..++.+++++|+++ |++++||++.|+++.+.++.+|+|.|
T Consensus 282 ~~vI~GD~td~e~L~~AgI~~A~aVI~~t~d------D~~Nl~ivL~ar~l~--p~~kIIa~v~~~~~~~~L~~~GaD~V 353 (393)
T PRK10537 282 ADLIPGDSSDSAVLKKAGAARARAILALRDN------DADNAFVVLAAKEMS--SDVKTVAAVNDSKNLEKIKRVHPDMI 353 (393)
T ss_pred CcEEEeCCCCHHHHHhcCcccCCEEEEcCCC------hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHhcCCCEE
Confidence 8899999999999999999999988776543 677788999999998 89999999999999999999999999
Q ss_pred EehHHHHHHHHHHHHccCCHHH-HHHHHh
Q 003021 438 EPVENVASKLFVQCSRQKGLIK-IYRHLL 465 (856)
Q Consensus 438 i~~~~i~~~lLaq~~~~Pgl~~-v~~~Ll 465 (856)
++|+++.++.|++.+..+.+.. .+.+++
T Consensus 354 Isp~~l~g~~la~~l~g~~I~~~~i~~~~ 382 (393)
T PRK10537 354 FSPQLLGSELLARTLNGEEIDNDMITSML 382 (393)
T ss_pred ECHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9999999999999988877643 444444
No 5
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2e-20 Score=205.21 Aligned_cols=368 Identities=15% Similarity=0.191 Sum_probs=257.4
Q ss_pred CCCCcccc---ccCCCCCCcccccccccCCccc--ccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 003021 144 ATGSPFAC---MSNSLNKPMPLKLDVSLPSLQD--VRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKF 218 (856)
Q Consensus 144 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~rl~y~fd~~~~~~~~~~~~~l~~~~~~iv~~g~~l~~~~ 218 (856)
+|+.||-- ++.-.---+|++++||+++-+. +-..+.|-.+.-+..+.+.+ ++++.+++|+++.-++|+-.+.-
T Consensus 133 itsfpfii~ifipsltylyvpvflncwlakgalqammndl~r~~~~s~sal~~ql--~ll~s~l~clift~~c~i~h~qr 210 (1087)
T KOG3193|consen 133 ITSFPFIISIFIPSLTYLYVPVFLNCWLAKGALQAMMNDLNRKSFISSSALFRQL--LLLFSVLACLIFTGMCSIEHLQR 210 (1087)
T ss_pred hhcccceeeeeccccceeechhhhhhhhhhhHHHHhhhhHhHHhhhhHHHHHHHH--HHHHHHHHHHHHhhhhhHHHHHH
Confidence 67888853 2333334688999999998754 33444555544444444443 23445556666666666665543
Q ss_pred -cCCCCCHHHHHHHHHHhhhcccccccc---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccc--cc
Q 003021 219 -RDETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMTEQFR-NNMQKLREGAQM--QV 291 (856)
Q Consensus 219 -eg~~~s~~dalw~~~~~vt~st~g~gd---~T~~gRl~~v~l~l~Gi~~fa~li~~it~~l~-~~~~~lr~G~~~--~v 291 (856)
.|...++|.++| |.++|.+|+|||| .-++.++..++++-+.++++..- .+.+. ..+++.+.|... --
T Consensus 211 a~~k~i~lf~s~y--~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q----~~~l~~tw~erqk~g~~~ss~~ 284 (1087)
T KOG3193|consen 211 ARGKRIDLFTSFY--FVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQ----LDELGQTWSERQKSGTDFSSWN 284 (1087)
T ss_pred ccCceeeeeeeEE--EEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHH----HHHHHHHHHHHhhcCCCccccc
Confidence 366789999999 9999999999998 44678888888888777655432 22222 233444555421 11
Q ss_pred cCCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCC-hhHHHHHHHhhccccCCceEEEecCCCHHH
Q 003021 292 LESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP-RKQMDKLAENIAKDLNHIDILSKSLTLTKS 370 (856)
Q Consensus 292 ~~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~-~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~ 370 (856)
....|+|||-..-....+.+-|.+..... .-.+-.||+|++.+ ...+.-+..- +-..+.+..+.|+....++
T Consensus 285 ~~e~hvvv~~ttl~~~~i~dfl~efyahp------~~q~~~ivllsp~eld~~~rmllki-plwnnrvhyv~gs~lrd~d 357 (1087)
T KOG3193|consen 285 GVESHVVVTITTLEVEFIRDFLEEFYAHP------ENQRIQIVLLSPAELDNQTRMLLKI-PLWNNRVHYVRGSSLRDED 357 (1087)
T ss_pred cccceEEEEEeeeeHHHHHHHHHHHhcCc------ccccEEEEEechHHhcchhhhheec-cccccceeeecccccccch
Confidence 25889999999988888777776653311 11234677776532 1122222211 1111244555566667899
Q ss_pred HHHcCccccCeEEEecCCC--CCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCcHHHHHhcCCCeEEehHHHHHHHH
Q 003021 371 YERAAANKARAIIILPTKG--DRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLF 448 (856)
Q Consensus 371 L~rA~v~~A~aVIIl~~~~--D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~~~~l~~~g~~~Vi~~~~i~~~lL 448 (856)
|+||++..|++.+|++... +...+|..+++...|++.+. |++|-.+++..++..-+++.+ .++++.+++.-.++
T Consensus 358 l~ra~~~~s~acfilsar~~~~k~a~dehtilrswaikdfa--pnv~qyvqifr~e~k~hi~~a--e~~icedefkyall 433 (1087)
T KOG3193|consen 358 LERANVATSKACFILSARHVNRKVATDEHTILRSWAIKDFA--PNVKQYVQIFRAETKMHIEHA--EVLICEDEFKYALL 433 (1087)
T ss_pred hhhhhhcccchheeeehhhhccccccchhhHHHHHhhhhcC--CchHHHhhhhchhhhhhhhhh--eeEEehhhHHHHHH
Confidence 9999999999999998764 33456888999999999998 999999988888877776654 47999999999999
Q ss_pred HHHHccCCHHHHHHHHhcc--------------------cCcEEEEec--CC----CCCCCCHHHHHccC-C--ceEEEE
Q 003021 449 VQCSRQKGLIKIYRHLLNY--------------------RKNIFNLWS--FP----NLAGIKYRQLRRGF-Q--EAVVCG 499 (856)
Q Consensus 449 aq~~~~Pgl~~v~~~Ll~f--------------------~g~E~~v~~--~p----~l~G~tf~el~~~~-~--~aivIG 499 (856)
|..+.+||++.++.-|+.. .|+|+|-.. .+ +++||+|....++- + |+-+||
T Consensus 434 annc~cpg~st~itll~htsrg~egq~s~e~whk~yg~~sgne~y~i~~~dskff~ey~gksfs~~sfhahk~ygi~li~ 513 (1087)
T KOG3193|consen 434 ANNCICPGISTFITLLMHTSRGEEGQKSTEPWHKVYGFHSGNEMYQIKVQDSKFFCEYVGKSFSSTSFHAHKEYGIGLIA 513 (1087)
T ss_pred hcCCcCCCHHHHHHHHhhhccccccCCCCchHHHHhccccCCeEEEEEecccceeeeecccccchhhhhhhhhcCeEEEE
Confidence 9999999999998877752 358888543 22 78999999877652 2 788999
Q ss_pred EEECC---EEEECCCCCceecCCCEEEEEecCCC
Q 003021 500 LYRNG---KIYFHPNDDETLQPTDKILFIAPIHG 530 (856)
Q Consensus 500 I~r~G---~~~lnP~~d~vI~~gD~LivIa~~~~ 530 (856)
+.-+| .+.+||.+..++++.|.+++++-+.+
T Consensus 514 v~p~~~~~~~~lnpg~~hi~~~~dt~yym~lt~e 547 (1087)
T KOG3193|consen 514 VSPDGDTSRMKLNPGSSHIIQPTDTVYYMGLTNE 547 (1087)
T ss_pred EcCCCCcceeecCCCcccccCCCCeEEEEecccc
Confidence 98643 57899999999999999999987653
No 6
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.5e-19 Score=188.30 Aligned_cols=206 Identities=20% Similarity=0.274 Sum_probs=171.6
Q ss_pred eEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHcC
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAA 375 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA~ 375 (856)
-++|+|.|+.|..+++.|.+.++ .||+ .|.+++..++... +.....++.++++++++|++||
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-------------~Vv~-Id~d~~~~~~~~~----~~~~~~~v~gd~t~~~~L~~ag 63 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-------------NVVL-IDRDEERVEEFLA----DELDTHVVIGDATDEDVLEEAG 63 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-------------ceEE-EEcCHHHHHHHhh----hhcceEEEEecCCCHHHHHhcC
Confidence 37999999999999999998766 3554 5888877777333 1127889999999999999999
Q ss_pred ccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCcHHHHHhcCCCeEEehHHHHHHHHHHHHccC
Q 003021 376 ANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQK 455 (856)
Q Consensus 376 v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~~~~l~~~g~~~Vi~~~~i~~~lLaq~~~~P 455 (856)
+++|++++++ +..| +.|.+.|.++.+++. ..++||+++++++.+.++..|++++++|+...+..+++....|
T Consensus 64 i~~aD~vva~-t~~d----~~N~i~~~la~~~~g---v~~viar~~~~~~~~~~~~~g~~~ii~Pe~~~~~~l~~~i~~p 135 (225)
T COG0569 64 IDDADAVVAA-TGND----EVNSVLALLALKEFG---VPRVIARARNPEHEKVLEKLGADVIISPEKLAAKRLARLIVTP 135 (225)
T ss_pred CCcCCEEEEe-eCCC----HHHHHHHHHHHHhcC---CCcEEEEecCHHHHHHHHHcCCcEEECHHHHHHHHHHHHhcCC
Confidence 9999976655 4445 788888999977653 4568999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcccC-----cEEEEecCCCCCCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEecCC
Q 003021 456 GLIKIYRHLLNYRK-----NIFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIH 529 (856)
Q Consensus 456 gl~~v~~~Ll~f~g-----~E~~v~~~p~l~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa~~~ 529 (856)
++.+++ .+.+ .++.+.+.++++|++++|+..+++ ++++++|.|+|...+.|+++++|++||++++++..+
T Consensus 136 ~~~~~~----~~~~~~~~~~~~~v~~~~~~~g~~L~el~~~~~~~~~vvai~r~~~~~~~p~g~~~l~~gD~l~v~~~~~ 211 (225)
T COG0569 136 GALDVL----ELAGGDAEVIEEKVAEDSPLAGKTLRELDLRLPYDVNVIAIKRGGNELIIPRGDTTLEAGDRLIVIGAPE 211 (225)
T ss_pred ChheEE----eecCCcceEEEEEecCCCccCCcCHHHhcccCCCCcEEEEEecCCCceecCCCCCEecCCCEEEEEEcHH
Confidence 998873 4432 344555666899999999997775 899999999873468999999999999999999986
Q ss_pred CC
Q 003021 530 GK 531 (856)
Q Consensus 530 ~~ 531 (856)
..
T Consensus 212 ~i 213 (225)
T COG0569 212 AL 213 (225)
T ss_pred HH
Confidence 44
No 7
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.80 E-value=3.1e-18 Score=198.14 Aligned_cols=210 Identities=16% Similarity=0.208 Sum_probs=170.7
Q ss_pred cCCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHH
Q 003021 292 LESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSY 371 (856)
Q Consensus 292 ~~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L 371 (856)
...+|+||||||+.|..++++|...+. .+++ .|.+++..+.+.+. ..+..+++|++++.++|
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-------------~v~v-id~~~~~~~~~~~~----~~~~~~i~gd~~~~~~L 290 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-------------SVKL-IERDPERAEELAEE----LPNTLVLHGDGTDQELL 290 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-------------eEEE-EECCHHHHHHHHHH----CCCCeEEECCCCCHHHH
Confidence 458999999999999999999987554 4555 47787777776553 13678999999999999
Q ss_pred HHcCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCcHHHHHhcCCCeEEehHHHHHHHHHHH
Q 003021 372 ERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQC 451 (856)
Q Consensus 372 ~rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~~~~l~~~g~~~Vi~~~~i~~~lLaq~ 451 (856)
+++++++|++++++.++ |..++.+++.++++. ..++++++.++++.+.++..|++.|+.++.++++.+++.
T Consensus 291 ~~~~~~~a~~vi~~~~~------~~~n~~~~~~~~~~~---~~~ii~~~~~~~~~~~~~~~g~~~vi~p~~~~~~~~~~~ 361 (453)
T PRK09496 291 EEEGIDEADAFIALTND------DEANILSSLLAKRLG---AKKVIALVNRPAYVDLVEGLGIDIAISPRQATASEILRH 361 (453)
T ss_pred HhcCCccCCEEEECCCC------cHHHHHHHHHHHHhC---CCeEEEEECCcchHHHHHhcCCCEEECHHHHHHHHHHHH
Confidence 99999999987765442 334455666667764 348999999999999999999999999999999999999
Q ss_pred HccCCHHHHHHHHhc-ccCcEEEEecCCCCCCCCHHHHHccCCceEEEEEEECCEEEECCCCCceecCCCEEEEEecCCC
Q 003021 452 SRQKGLIKIYRHLLN-YRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHG 530 (856)
Q Consensus 452 ~~~Pgl~~v~~~Ll~-f~g~E~~v~~~p~l~G~tf~el~~~~~~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa~~~~ 530 (856)
+..|++..++....+ .+..|+++.+.+++.|++++|+... .++.++|+.|+|++ ++|+++++|++||.++++++.++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~g~~l~el~l~-~~~~i~~i~r~~~~-~~p~~~~~l~~gD~l~v~~~~~~ 439 (453)
T PRK09496 362 VRRGDIVAVHSLRRGAAEAIEAVAHETSKVVGKPLKDLKLP-KGVLIGAIVRGGEV-IIPTGDTVIEPGDHVIVFVLDKK 439 (453)
T ss_pred hhccchhhhhhhcCCcEEEEEEEeCCCChhccCCHHHcCCC-CCCEEEEEEECCEE-EcCCCCcEECCCCEEEEEEcCcc
Confidence 999998776432111 1235677777889999999999543 38999999999997 89999999999999999999987
No 8
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.63 E-value=3.1e-14 Score=169.14 Aligned_cols=141 Identities=13% Similarity=0.103 Sum_probs=119.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
.+||+||||+|+.|..++++|.+.++ ++|+ .|.|++..+.+.+ .+.++++||++++++|+
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~g~-------------~vvv-Id~d~~~~~~~~~------~g~~~i~GD~~~~~~L~ 475 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAAGI-------------PLVV-IETSRTRVDELRE------RGIRAVLGNAANEEIMQ 475 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHCCC-------------CEEE-EECCHHHHHHHHH------CCCeEEEcCCCCHHHHH
Confidence 47999999999999999999998765 4554 4888888877754 28899999999999999
Q ss_pred HcCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCcHHHHHhcCCCeEEehHHHHHHHHHHHH
Q 003021 373 RAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCS 452 (856)
Q Consensus 373 rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~~~~l~~~g~~~Vi~~~~i~~~lLaq~~ 452 (856)
++++++|++++++.+++ .++...+.++|+.+ ++.+++|+++|+++.+.++.+|+|+|++|++..++.+++..
T Consensus 476 ~a~i~~a~~viv~~~~~------~~~~~iv~~~~~~~--~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~~~a~~i~~~l 547 (558)
T PRK10669 476 LAHLDCARWLLLTIPNG------YEAGEIVASAREKR--PDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELL 547 (558)
T ss_pred hcCccccCEEEEEcCCh------HHHHHHHHHHHHHC--CCCeEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHh
Confidence 99999999877766542 23333455566666 88999999999999999999999999999999999999999
Q ss_pred ccCCHHHHH
Q 003021 453 RQKGLIKIY 461 (856)
Q Consensus 453 ~~Pgl~~v~ 461 (856)
.+|+..++.
T Consensus 548 ~~~~~~~~~ 556 (558)
T PRK10669 548 ETPPAGEVV 556 (558)
T ss_pred cCCCccccc
Confidence 999988763
No 9
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.53 E-value=1.1e-12 Score=156.84 Aligned_cols=132 Identities=14% Similarity=0.065 Sum_probs=110.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
.++|+||||+|+.|..++++|.+.++ ++|+ .|.|++..+.+.+ .+.++++||+++++.|+
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~g~-------------~vvv-ID~d~~~v~~~~~------~g~~v~~GDat~~~~L~ 458 (601)
T PRK03659 399 DKPQVIIVGFGRFGQVIGRLLMANKM-------------RITV-LERDISAVNLMRK------YGYKVYYGDATQLELLR 458 (601)
T ss_pred ccCCEEEecCchHHHHHHHHHHhCCC-------------CEEE-EECCHHHHHHHHh------CCCeEEEeeCCCHHHHH
Confidence 47999999999999999999987655 4555 4888888887754 28899999999999999
Q ss_pred HcCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCcHHHHHhcCCCeEEehHHHHHHHHHHHH
Q 003021 373 RAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCS 452 (856)
Q Consensus 373 rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~~~~l~~~g~~~Vi~~~~i~~~lLaq~~ 452 (856)
++++++|+++|++.++ |..++.++..+|+.+ |+.+++|+++|+++.+.++.+|++.|++.....+..+++.+
T Consensus 459 ~agi~~A~~vv~~~~d------~~~n~~i~~~~r~~~--p~~~IiaRa~~~~~~~~L~~~Ga~~vv~e~~es~l~l~~~~ 530 (601)
T PRK03659 459 AAGAEKAEAIVITCNE------PEDTMKIVELCQQHF--PHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKT 530 (601)
T ss_pred hcCCccCCEEEEEeCC------HHHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHhCCCCEEEccHHHHHHHHHHHH
Confidence 9999999987766553 566666777888877 89999999999999999999999999988666666665553
No 10
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=2.9e-13 Score=142.47 Aligned_cols=209 Identities=18% Similarity=0.204 Sum_probs=151.4
Q ss_pred eEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhh-hcccCCCCccCceEEEEECCCCCHHHHHhcccccccc
Q 003021 596 RILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRA-SNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNS 674 (856)
Q Consensus 596 ~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~-l~~~~~~~l~~~~V~~i~GD~td~~~L~~a~i~i~~a 674 (856)
+++|+|-|+.|..+++.|. ..|-.+++++. ++++++. +++ ....+.++||+++.++|++||+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~---~~g~~Vv~Id~--d~~~~~~~~~~-------~~~~~~v~gd~t~~~~L~~agi~---- 65 (225)
T COG0569 2 KIIIIGAGRVGRSVARELS---EEGHNVVLIDR--DEERVEEFLAD-------ELDTHVVIGDATDEDVLEEAGID---- 65 (225)
T ss_pred EEEEECCcHHHHHHHHHHH---hCCCceEEEEc--CHHHHHHHhhh-------hcceEEEEecCCCHHHHHhcCCC----
Confidence 6899999999999999996 45777888887 5566543 221 24456799999999999999998
Q ss_pred ccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEecccchhHhhhcCCCcceeehhhH
Q 003021 675 FKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEI 754 (856)
Q Consensus 675 ~~~d~~~~~siIILsd~d~~~~~~~~aDa~~l~t~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~ag~~~d~I~S~~i 754 (856)
++| .+++.+++| ..|++..+.+++. .|.+ ++|+++.++.+.+.+.+.|++ ..|.+...
T Consensus 66 -~aD-----~vva~t~~d----------~~N~i~~~la~~~---~gv~--~viar~~~~~~~~~~~~~g~~-~ii~Pe~~ 123 (225)
T COG0569 66 -DAD-----AVVAATGND----------EVNSVLALLALKE---FGVP--RVIARARNPEHEKVLEKLGAD-VIISPEKL 123 (225)
T ss_pred -cCC-----EEEEeeCCC----------HHHHHHHHHHHHh---cCCC--cEEEEecCHHHHHHHHHcCCc-EEECHHHH
Confidence 456 888888754 6777666666542 5666 899999999999999998744 56666677
Q ss_pred HHHHHHHHhhcccHHHHHHHHHc-cCCCeEEEEeccccccCCCCCCHHHHHHHHHhcCcEEEEEEECCeEEeCCCCCCCC
Q 003021 755 MSLVTAQVVENNELNEVWKDILN-AEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEP 833 (856)
Q Consensus 755 is~vlAq~a~n~~l~~v~~eLl~-~eG~Ei~v~~~~~~~~~g~~~sF~~L~~~a~~~g~ilIG~~~~~~~iiNP~~k~~~ 833 (856)
++..++.....|.+..+...-.+ .+-.++.+.+.+.+ .+.+-.++..+ ...+.+++++.+++...+.|.|.
T Consensus 124 ~~~~l~~~i~~p~~~~~~~~~~~~~~~~~~~v~~~~~~----~g~~L~el~~~-~~~~~~vvai~r~~~~~~~p~g~--- 195 (225)
T COG0569 124 AAKRLARLIVTPGALDVLELAGGDAEVIEEKVAEDSPL----AGKTLRELDLR-LPYDVNVIAIKRGGNELIIPRGD--- 195 (225)
T ss_pred HHHHHHHHhcCCChheEEeecCCcceEEEEEecCCCcc----CCcCHHHhccc-CCCCcEEEEEecCCCceecCCCC---
Confidence 78999999888887766553322 12223333333344 33344444311 24788899999987677888653
Q ss_pred ccccCCCEEEEEecCCC
Q 003021 834 LSLTLTDSLIVISELEG 850 (856)
Q Consensus 834 ~~l~~gD~LIVi~~~e~ 850 (856)
..+++||+++|++..+.
T Consensus 196 ~~l~~gD~l~v~~~~~~ 212 (225)
T COG0569 196 TTLEAGDRLIVIGAPEA 212 (225)
T ss_pred CEecCCCEEEEEEcHHH
Confidence 49999999999998764
No 11
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=99.52 E-value=2.3e-13 Score=132.66 Aligned_cols=153 Identities=20% Similarity=0.367 Sum_probs=130.7
Q ss_pred EEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEecccchhHhhhcCCCcceeehhhHHHHHHHHHh
Q 003021 684 SIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVV 763 (856)
Q Consensus 684 siIILsd~d~~~~~~~~aDa~~l~t~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~ag~~~d~I~S~~iis~vlAq~a 763 (856)
+||+|+.. ++..++|++++..+|.++.+.+.. + .++|+|+.+..|.+++..++ +..+=.-++++|++|.|.+
T Consensus 3 aIIiL~~k----~d~ye~Da~a~lsVLaL~~v~e~~--~-g~vIVE~S~~~t~~LlKsv~-G~~VetV~dv~skL~VQCs 74 (206)
T PF06241_consen 3 AIIILAEK----EDRYESDADAFLSVLALQPVKEGL--S-GHVIVEVSDSDTEQLLKSVS-GLKVETVHDVISKLMVQCS 74 (206)
T ss_pred eEEEeCCC----CCcchhhHHHHHHHhhcccccccC--c-ccEEEEecCCChHHHHHhhc-CceeeeHHHHHHHHHHHhc
Confidence 79999853 578899999999999999876654 3 47999999999999998876 3233333789999999999
Q ss_pred hcccHHHHHHHHHccCCCeEEEEeccccccCCCCCCHHHHHHHHHhcCcEEEEEEECCeEEeCCCCCCCCccccCCCEEE
Q 003021 764 ENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLI 843 (856)
Q Consensus 764 ~n~~l~~v~~eLl~~eG~Ei~v~~~~~~~~~g~~~sF~~L~~~a~~~g~ilIG~~~~~~~iiNP~~k~~~~~l~~gD~LI 843 (856)
.+|++..+|+++|+.+-++||++..+.+ .+..|.++... ..+.+++|+.++|+.++||. ++ .++.+||+|+
T Consensus 75 RQ~GL~~Iy~~iL~~~k~vf~l~~~P~L----~Gm~y~dvr~~--Fpdav~CGv~r~GkI~fhP~-Dd--~vL~e~DklL 145 (206)
T PF06241_consen 75 RQPGLAQIYEDILGFEKNVFNLKRWPQL----DGMKYRDVRRS--FPDAVVCGVKRDGKIVFHPD-DD--YVLREGDKLL 145 (206)
T ss_pred cCccHHHHHHHHhCCCCcEEEEecCccc----CCcCHHHHHhc--CCcceeeeeeeCCeeEECCC-CC--ceeecCCEEE
Confidence 9999999999999999999999998865 57889888654 68999999999999999996 43 5899999999
Q ss_pred EEecCCCCCC
Q 003021 844 VISELEGEQP 853 (856)
Q Consensus 844 Vi~~~e~~~~ 853 (856)
||++..+.+|
T Consensus 146 vIa~~~~~~~ 155 (206)
T PF06241_consen 146 VIAPVNGKRP 155 (206)
T ss_pred EEeecCCccc
Confidence 9999987665
No 12
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.48 E-value=4.3e-12 Score=152.16 Aligned_cols=132 Identities=13% Similarity=0.065 Sum_probs=109.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
.++|+||||+|+.|..+.++|.+.+. ++++ .|.|++..+.+.+ .+.++++||+++++.|+
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~g~-------------~vvv-ID~d~~~v~~~~~------~g~~v~~GDat~~~~L~ 458 (621)
T PRK03562 399 QQPRVIIAGFGRFGQIVGRLLLSSGV-------------KMTV-LDHDPDHIETLRK------FGMKVFYGDATRMDLLE 458 (621)
T ss_pred ccCcEEEEecChHHHHHHHHHHhCCC-------------CEEE-EECCHHHHHHHHh------cCCeEEEEeCCCHHHHH
Confidence 37999999999999999999988655 4555 4888888888754 28899999999999999
Q ss_pred HcCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCcHHHHHhcCCCeEEehHHHHHHHHHHHH
Q 003021 373 RAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCS 452 (856)
Q Consensus 373 rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~~~~l~~~g~~~Vi~~~~i~~~lLaq~~ 452 (856)
++|+++|+.+|++.++ |..++.++..+|+.+ |+.+++|+.+|+++.+.++.+|++.|+....-.+..+++.+
T Consensus 459 ~agi~~A~~vvv~~~d------~~~n~~i~~~ar~~~--p~~~iiaRa~d~~~~~~L~~~Gad~v~~e~~e~sl~l~~~~ 530 (621)
T PRK03562 459 SAGAAKAEVLINAIDD------PQTSLQLVELVKEHF--PHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKSGRLV 530 (621)
T ss_pred hcCCCcCCEEEEEeCC------HHHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHCCCCEEehhhHhHHHHHHHHH
Confidence 9999999987776543 455666778888877 89999999999999999999999999877655555555553
No 13
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.45 E-value=5.9e-13 Score=125.01 Aligned_cols=116 Identities=22% Similarity=0.335 Sum_probs=97.5
Q ss_pred EEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHcCc
Q 003021 297 IIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAAA 376 (856)
Q Consensus 297 iII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA~v 376 (856)
|||||||+.+..++++|.+.+. ++++ .|.+++..+.+.+. ++.+++|+++++++|+++++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~-------------~vvv-id~d~~~~~~~~~~------~~~~i~gd~~~~~~l~~a~i 60 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI-------------DVVV-IDRDPERVEELREE------GVEVIYGDATDPEVLERAGI 60 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-------------EEEE-EESSHHHHHHHHHT------TSEEEES-TTSHHHHHHTTG
T ss_pred eEEEcCCHHHHHHHHHHHhCCC-------------EEEE-EECCcHHHHHHHhc------ccccccccchhhhHHhhcCc
Confidence 6999999999999999998432 4665 47888888887653 78999999999999999999
Q ss_pred cccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCcHHHHHhcCCCeEEeh
Q 003021 377 NKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPV 440 (856)
Q Consensus 377 ~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~~~~l~~~g~~~Vi~~ 440 (856)
++|+++++++++ |..++.+++.+|+++ +..++++++.++++.+.++..|++.|+.|
T Consensus 61 ~~a~~vv~~~~~------d~~n~~~~~~~r~~~--~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 61 EKADAVVILTDD------DEENLLIALLARELN--PDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp GCESEEEEESSS------HHHHHHHHHHHHHHT--TTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred cccCEEEEccCC------HHHHHHHHHHHHHHC--CCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 999988877653 677788888889988 88999999999999999999999999876
No 14
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.34 E-value=9.8e-12 Score=140.65 Aligned_cols=143 Identities=18% Similarity=0.265 Sum_probs=108.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhcccccc
Q 003021 593 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQ 672 (856)
Q Consensus 593 ~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a~i~i~ 672 (856)
.++|++|||||+.+..++++|.+ .|..++++++. +. ++. ..++ +.++.||++|+++|+++|++
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~---~g~~vvVId~d--~~-~~~-------~~~g--~~vI~GD~td~e~L~~AgI~-- 301 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQ---RGQAVTVIVPL--GL-EHR-------LPDD--ADLIPGDSSDSAVLKKAGAA-- 301 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHH---CCCCEEEEECc--hh-hhh-------ccCC--CcEEEeCCCCHHHHHhcCcc--
Confidence 37999999999999999999974 35568888753 11 111 1123 34699999999999999998
Q ss_pred ccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEecccchhHhhhcCCCcceeehh
Q 003021 673 NSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAE 752 (856)
Q Consensus 673 ~a~~~d~~~~~siIILsd~d~~~~~~~~aDa~~l~t~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~ag~~~d~I~S~ 752 (856)
+| + ++++++++ |++|+++.+.+|+++|+ .+||+++.++++.+.++++|++ .+|.++
T Consensus 302 ~A---~-----aVI~~t~d----------D~~Nl~ivL~ar~l~p~-----~kIIa~v~~~~~~~~L~~~GaD-~VIsp~ 357 (393)
T PRK10537 302 RA---R-----AILALRDN----------DADNAFVVLAAKEMSSD-----VKTVAAVNDSKNLEKIKRVHPD-MIFSPQ 357 (393)
T ss_pred cC---C-----EEEEcCCC----------hHHHHHHHHHHHHhCCC-----CcEEEEECCHHHHHHHHhcCCC-EEECHH
Confidence 33 3 67777764 58999999999998876 6999999999999999999865 566666
Q ss_pred hHHHHHHHHHhhccc-HHHHHHHHH
Q 003021 753 EIMSLVTAQVVENNE-LNEVWKDIL 776 (856)
Q Consensus 753 ~iis~vlAq~a~n~~-l~~v~~eLl 776 (856)
++.+..+++....+. -++...+++
T Consensus 358 ~l~g~~la~~l~g~~I~~~~i~~~~ 382 (393)
T PRK10537 358 LLGSELLARTLNGEEIDNDMITSML 382 (393)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 788989998865555 334444433
No 15
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.16 E-value=1.4e-10 Score=108.79 Aligned_cols=111 Identities=15% Similarity=0.258 Sum_probs=87.8
Q ss_pred EEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhcccccccccc
Q 003021 597 ILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFK 676 (856)
Q Consensus 597 vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a~i~i~~a~~ 676 (856)
|+|||||+.+..+++.|.+ .+..+++++. ++++.+.+.+ ..+.++.||+++.++|++++++ +
T Consensus 1 vvI~G~g~~~~~i~~~L~~---~~~~vvvid~--d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~--~--- 62 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE---GGIDVVVIDR--DPERVEELRE--------EGVEVIYGDATDPEVLERAGIE--K--- 62 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH---TTSEEEEEES--SHHHHHHHHH--------TTSEEEES-TTSHHHHHHTTGG--C---
T ss_pred eEEEcCCHHHHHHHHHHHh---CCCEEEEEEC--CcHHHHHHHh--------cccccccccchhhhHHhhcCcc--c---
Confidence 6999999999999999975 3457999997 4455544432 1245699999999999999988 3
Q ss_pred CCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEecccchhHhhhcCCC
Q 003021 677 DGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPS 745 (856)
Q Consensus 677 ~d~~~~~siIILsd~d~~~~~~~~aDa~~l~t~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~ag~~ 745 (856)
++ ++++++++ |..|+.+++.+|++.++ .+||+++.++++.+.++++|++
T Consensus 63 a~-----~vv~~~~~----------d~~n~~~~~~~r~~~~~-----~~ii~~~~~~~~~~~l~~~g~d 111 (116)
T PF02254_consen 63 AD-----AVVILTDD----------DEENLLIALLARELNPD-----IRIIARVNDPENAELLRQAGAD 111 (116)
T ss_dssp ES-----EEEEESSS----------HHHHHHHHHHHHHHTTT-----SEEEEEESSHHHHHHHHHTT-S
T ss_pred cC-----EEEEccCC----------HHHHHHHHHHHHHHCCC-----CeEEEEECCHHHHHHHHHCCcC
Confidence 33 78888764 58999999999998877 5999999999999999998754
No 16
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.04 E-value=9.7e-10 Score=130.95 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=108.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhcccccc
Q 003021 593 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQ 672 (856)
Q Consensus 593 ~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a~i~i~ 672 (856)
.++|++|||+|+.++.++++|.+ .|.++++++. ++++.+.+. +..+..++||++|+++|++++++
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~---~g~~vvvId~--d~~~~~~~~--------~~g~~~i~GD~~~~~~L~~a~i~-- 480 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLA---AGIPLVVIET--SRTRVDELR--------ERGIRAVLGNAANEEIMQLAHLD-- 480 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHH---CCCCEEEEEC--CHHHHHHHH--------HCCCeEEEcCCCCHHHHHhcCcc--
Confidence 47999999999999999999964 4667999997 556655443 23456699999999999999998
Q ss_pred ccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEecccchhHhhhcCCCcceeehh
Q 003021 673 NSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAE 752 (856)
Q Consensus 673 ~a~~~d~~~~~siIILsd~d~~~~~~~~aDa~~l~t~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~ag~~~d~I~S~ 752 (856)
+ +| .+++.+++| .+|....+.+|..+++ .+||+++.++++.+.++++|++ .+|.++
T Consensus 481 ~---a~-----~viv~~~~~----------~~~~~iv~~~~~~~~~-----~~iiar~~~~~~~~~l~~~Gad-~vv~p~ 536 (558)
T PRK10669 481 C---AR-----WLLLTIPNG----------YEAGEIVASAREKRPD-----IEIIARAHYDDEVAYITERGAN-QVVMGE 536 (558)
T ss_pred c---cC-----EEEEEcCCh----------HHHHHHHHHHHHHCCC-----CeEEEEECCHHHHHHHHHcCCC-EEEChH
Confidence 3 34 677766543 5677777778886655 5899999999999999998755 666667
Q ss_pred hHHHHHHHHHhhcccHHH
Q 003021 753 EIMSLVTAQVVENNELNE 770 (856)
Q Consensus 753 ~iis~vlAq~a~n~~l~~ 770 (856)
+.+++-+++...+|...+
T Consensus 537 ~~~a~~i~~~l~~~~~~~ 554 (558)
T PRK10669 537 REIARTMLELLETPPAGE 554 (558)
T ss_pred HHHHHHHHHHhcCCCccc
Confidence 888888888777776443
No 17
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=98.91 E-value=8e-09 Score=123.88 Aligned_cols=120 Identities=10% Similarity=0.065 Sum_probs=96.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhcccccc
Q 003021 593 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQ 672 (856)
Q Consensus 593 ~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a~i~i~ 672 (856)
.++|++|||+||.+..+++.|.+ .|.++++++. ++++.+.+.+ .....+.||+++.++|+++|++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~---~g~~vvvID~--d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~-- 463 (601)
T PRK03659 399 DKPQVIIVGFGRFGQVIGRLLMA---NKMRITVLER--DISAVNLMRK--------YGYKVYYGDATQLELLRAAGAE-- 463 (601)
T ss_pred ccCCEEEecCchHHHHHHHHHHh---CCCCEEEEEC--CHHHHHHHHh--------CCCeEEEeeCCCHHHHHhcCCc--
Confidence 46899999999999999999974 4667999997 5566655432 2345699999999999999998
Q ss_pred ccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEecccchhHhhhcCCCcceeehh
Q 003021 673 NSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAE 752 (856)
Q Consensus 673 ~a~~~d~~~~~siIILsd~d~~~~~~~~aDa~~l~t~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~ag~~~d~I~S~ 752 (856)
+ ++ .+|+++|+ |..|+.+...+|+++|+ .+||+++.++++.+.++++|+ |.|+.+
T Consensus 464 ~---A~-----~vv~~~~d----------~~~n~~i~~~~r~~~p~-----~~IiaRa~~~~~~~~L~~~Ga--~~vv~e 518 (601)
T PRK03659 464 K---AE-----AIVITCNE----------PEDTMKIVELCQQHFPH-----LHILARARGRVEAHELLQAGV--TQFSRE 518 (601)
T ss_pred c---CC-----EEEEEeCC----------HHHHHHHHHHHHHHCCC-----CeEEEEeCCHHHHHHHHhCCC--CEEEcc
Confidence 3 33 67777764 48999999999997777 699999999999999999875 455444
No 18
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=98.84 E-value=1.7e-08 Score=121.44 Aligned_cols=120 Identities=11% Similarity=0.067 Sum_probs=96.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhcccccc
Q 003021 593 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQ 672 (856)
Q Consensus 593 ~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a~i~i~ 672 (856)
..+|++|||+||.++.+++.|.+ .|..+++++. ++++++.+++ .....+.||+++.++|+++|++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~---~g~~vvvID~--d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~-- 463 (621)
T PRK03562 399 QQPRVIIAGFGRFGQIVGRLLLS---SGVKMTVLDH--DPDHIETLRK--------FGMKVFYGDATRMDLLESAGAA-- 463 (621)
T ss_pred ccCcEEEEecChHHHHHHHHHHh---CCCCEEEEEC--CHHHHHHHHh--------cCCeEEEEeCCCHHHHHhcCCC--
Confidence 46899999999999999999974 4677999987 5567666542 2234599999999999999998
Q ss_pred ccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEecccchhHhhhcCCCcceeehh
Q 003021 673 NSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAE 752 (856)
Q Consensus 673 ~a~~~d~~~~~siIILsd~d~~~~~~~~aDa~~l~t~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~ag~~~d~I~S~ 752 (856)
++ + .+|+++|+ |..|+.+..++|+++|+ .+|+++..+.++.+.++++|+ |.+..+
T Consensus 464 ~A---~-----~vvv~~~d----------~~~n~~i~~~ar~~~p~-----~~iiaRa~d~~~~~~L~~~Ga--d~v~~e 518 (621)
T PRK03562 464 KA---E-----VLINAIDD----------PQTSLQLVELVKEHFPH-----LQIIARARDVDHYIRLRQAGV--EKPERE 518 (621)
T ss_pred cC---C-----EEEEEeCC----------HHHHHHHHHHHHHhCCC-----CeEEEEECCHHHHHHHHHCCC--CEEehh
Confidence 33 3 67777764 48999999999998776 689999999999999998864 455443
No 19
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.57 E-value=1.1e-06 Score=89.16 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=113.2
Q ss_pred cccCCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHH
Q 003021 290 QVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTK 369 (856)
Q Consensus 290 ~v~~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e 369 (856)
.....+|+++||+++.+..+.+.|...+. .++++ +.+.+..+.+.. .+..++.|+.+..+
T Consensus 17 ~~~l~~~~ii~g~~~~g~~~~~~l~~~~~-------------~~~vi-~~~~~~~~~~~~------~~~~~~~gd~~~~~ 76 (212)
T COG1226 17 IVRLKRHVIIVGFGRVGQIVARALLASGI-------------PVVVI-DSDEDRVELLRE------LGLLVVLGDATREE 76 (212)
T ss_pred cccCCCCEEEEcCChHHHHHHHHHHHCCC-------------CEEEE-ECCHHHHHHHHH------CCCcEEEecCCCHH
Confidence 34579999999999999999999987543 34543 666656666544 27789999999999
Q ss_pred HHHHcCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeC-cCcHHHHHhcCCCeEEehHHHHHHHH
Q 003021 370 SYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSN-PNTCELLKSLSGLKVEPVENVASKLF 448 (856)
Q Consensus 370 ~L~rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d-~~~~~~l~~~g~~~Vi~~~~i~~~lL 448 (856)
.|.++++++|+++++...+ +..++.++..++..+ |..+++++..+ ..+.+.+...|.+.++++....+..+
T Consensus 77 ~l~~a~~~~a~~vi~~~~~------~~~~~~~~~~~~~~~--p~~~i~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~ 148 (212)
T COG1226 77 VLEAAGIERARAVIVTLSD------DATNVFIVLLARAIN--PELEILARARDLDEAVETLTTVGADEVVPPTFESALLL 148 (212)
T ss_pred HHHhcChhheeEEEEecCC------HHHHHHHHHHHHHHC--CCCEEEEEeccchHHHHHHHHcCCCeeecHHHHHHHHH
Confidence 9999999999998877653 455666666677777 88899999999 66678899999999999988888888
Q ss_pred HHHHccCCHHHH
Q 003021 449 VQCSRQKGLIKI 460 (856)
Q Consensus 449 aq~~~~Pgl~~v 460 (856)
+.....+.....
T Consensus 149 ~~~~~~~~~~~~ 160 (212)
T COG1226 149 ARAALVGLGGDS 160 (212)
T ss_pred HHHHhcccCCch
Confidence 888766654443
No 20
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.55 E-value=3.8e-07 Score=80.04 Aligned_cols=70 Identities=20% Similarity=0.438 Sum_probs=52.5
Q ss_pred HHHHHHHhhhhhhc-CCCCCHHHHHHHHHHhhhcccccccc---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003021 206 SFVVFGGFLFFKFR-DETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMTEQFR 277 (856)
Q Consensus 206 ~iv~~g~~l~~~~e-g~~~s~~dalw~~~~~vt~st~g~gd---~T~~gRl~~v~l~l~Gi~~fa~li~~it~~l~ 277 (856)
.++..|++.++..+ .+..++.|++| |..+|.+|+|||| .|+.||+++++.++.|+.+++.+++.+++.+.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~da~y--fs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 5 LVLAFGAIFFYISEGSEKWSFIDALY--FSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHTTSSSTTSHHHHHH--HHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHhcccCCHHHHHH--HHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444422 35789999999 7778888999998 56789999999999999999999999888765
No 21
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=98.49 E-value=3e-07 Score=89.84 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=58.8
Q ss_pred cEEEEecCCCCCCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEecCCCCCC
Q 003021 470 NIFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKK 533 (856)
Q Consensus 470 ~E~~v~~~p~l~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa~~~~~~~ 533 (856)
.+|++...++++|++++|+..+.+ |+++|||.|+|+++++|.|.++|++||.|+|+|+.+...+
T Consensus 88 ~~~~i~~~s~~~GksiGdl~irq~TGaTIIAI~r~~e~I~SPgPy~vle~gDtlvviG~~~~~~r 152 (162)
T COG0490 88 EWFKIEAGSPFIGKTIGDLNIRQNTGATVIAIVRNEEKILSPGPYTVLEAGDTLVVIGEETGLKR 152 (162)
T ss_pred eeeeeecCCcccCcchhhcccccccCcEEEEEEecCcEecCCCchhhhcCCCEEEEEecchHhHH
Confidence 578888999999999999998876 9999999999999999999999999999999999876544
No 22
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=98.41 E-value=5.3e-07 Score=101.68 Aligned_cols=94 Identities=15% Similarity=0.391 Sum_probs=72.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhc-----CCCCCHHHHHHHHHHhhhcccccccc---CCcchhHHHHHH
Q 003021 186 NVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFR-----DETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFIL 257 (856)
Q Consensus 186 d~~~~~~~~~~~~~l~~~~~~iv~~g~~l~~~~e-----g~~~s~~dalw~~~~~vt~st~g~gd---~T~~gRl~~v~l 257 (856)
--++++....+.+++++++..++++.++.|+ .| ....|..-++| |.++||+|+|||| .|..||+++..-
T Consensus 335 g~Tlr~S~~ElglLllfL~~GI~iFStlvY~-~Ek~~~~~~FtSIPa~~W--WaiVTMTTVGYGDm~P~T~~Gklvas~c 411 (477)
T KOG3713|consen 335 GLTLRRSYRELGLLLLFLAVGIVIFSTLVYF-AEKDEPDTKFTSIPAGFW--WAVVTMTTVGYGDMVPVTVLGKLVASLC 411 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCCCCccccchhh--eeeEEEeeecccCccccccchHHHHHHH
Confidence 3346666666666677777666666655554 43 33678899999 9999999999998 788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003021 258 AIWGILFYSRLLSTMTEQFRNNMQK 282 (856)
Q Consensus 258 ~l~Gi~~fa~li~~it~~l~~~~~~ 282 (856)
+++||+++|.=+++|.+-+..--.+
T Consensus 412 il~GVLvlAlPItiIv~nF~~~y~~ 436 (477)
T KOG3713|consen 412 ILCGVLVLALPITIIVNNFSMYYSE 436 (477)
T ss_pred HHHhHHHhhcchHhHhhhHHHHHHH
Confidence 9999999999899888877753333
No 23
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.12 E-value=8.1e-06 Score=101.92 Aligned_cols=48 Identities=10% Similarity=0.282 Sum_probs=42.9
Q ss_pred HHHHHHHhhhcccccccc---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003021 228 CLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMTEQFR 277 (856)
Q Consensus 228 alw~~~~~vt~st~g~gd---~T~~gRl~~v~l~l~Gi~~fa~li~~it~~l~ 277 (856)
|+| |+++|++|+|||| .|..+|+++++++++|+++|++++|.++..+.
T Consensus 254 slY--wai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~ 304 (823)
T PLN03192 254 AIY--WSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVV 304 (823)
T ss_pred HHH--HHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699 8889999999998 45689999999999999999999998887665
No 24
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=97.97 E-value=6.7e-06 Score=70.24 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=45.8
Q ss_pred EEEEecCCCCCCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEecCCCC
Q 003021 471 IFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGK 531 (856)
Q Consensus 471 E~~v~~~p~l~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa~~~~~ 531 (856)
|+.+.+.++++|++++|+..+.. ++.++||.|+|+ .+.|+++++|++||.|+++|..++.
T Consensus 3 e~~V~~~s~~~gk~l~el~l~~~~~~~i~~i~R~~~-~~~p~~~~~l~~gD~l~v~g~~~~i 63 (71)
T PF02080_consen 3 EVRVPENSPLVGKTLKELDLPERYGVRIVAIKRGGE-IIIPDGDTVLQAGDILIVVGDPEDI 63 (71)
T ss_dssp EEE--TTBTTTTEBHHHCTHHCHHTEEEEEEEETEE-EES--TT-BE-TTEEEEEEEEHHHH
T ss_pred EEEECCCCCCCCCCHHHCCCCccCCEEEEEEEECCE-EECCCCCCEECCCCEEEEEECHHHH
Confidence 67778888999999999655443 899999999855 6899999999999999999998644
No 25
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.92 E-value=1.4e-05 Score=90.60 Aligned_cols=77 Identities=22% Similarity=0.497 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhhhhhc---------CCCCCHHHHHHHHHHhhhcccccccc---CCcchhHHHHHHHHHHHHHHHHHHHH
Q 003021 204 CFSFVVFGGFLFFKFR---------DETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLST 271 (856)
Q Consensus 204 ~~~iv~~g~~l~~~~e---------g~~~s~~dalw~~~~~vt~st~g~gd---~T~~gRl~~v~l~l~Gi~~fa~li~~ 271 (856)
.|+..++.+++.|..| ....|+.||+| |.++|.+|+|||| +|+.||+++..+.+.|+.+|+.--|+
T Consensus 240 GFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALW--WG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGI 317 (654)
T KOG1419|consen 240 GFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALW--WGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGI 317 (654)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccchhHHHHHH--hhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhccccc
Confidence 3344445556666554 13468999999 9999999999999 56789999999999999999987788
Q ss_pred HHHHHHHHHHH
Q 003021 272 MTEQFRNNMQK 282 (856)
Q Consensus 272 it~~l~~~~~~ 282 (856)
+..++.-++++
T Consensus 318 LGSGfALKVQe 328 (654)
T KOG1419|consen 318 LGSGFALKVQE 328 (654)
T ss_pred ccchhhhhhHH
Confidence 77777766655
No 26
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=97.85 E-value=0.00027 Score=79.74 Aligned_cols=231 Identities=17% Similarity=0.164 Sum_probs=151.5
Q ss_pred CCCCCeEEEEeccccHHHH---HHHHhcc-cCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHh
Q 003021 591 LGPKERILLLGWRPDVVEM---IEEYDNY-LGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKD 666 (856)
Q Consensus 591 ~~~~~~vLI~Gw~r~~~~l---i~eL~~~-~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~ 666 (856)
....+||++|----.+..+ ++|+-+. ......|++++....+...+.+- ..++=|-+|+++.|....++.|++
T Consensus 284 ~~~e~hvvv~~ttl~~~~i~dfl~efyahp~~q~~~ivllsp~eld~~~rmll---kiplwnnrvhyv~gs~lrd~dl~r 360 (1087)
T KOG3193|consen 284 NGVESHVVVTITTLEVEFIRDFLEEFYAHPENQRIQIVLLSPAELDNQTRMLL---KIPLWNNRVHYVRGSSLRDEDLER 360 (1087)
T ss_pred ccccceEEEEEeeeeHHHHHHHHHHHhcCcccccEEEEEechHHhcchhhhhe---eccccccceeeecccccccchhhh
Confidence 4467899999766544444 4444222 22456777777532222222111 225668899999999999999999
Q ss_pred ccccccccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEecccchhHhhhcCCCc
Q 003021 667 TIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSL 746 (856)
Q Consensus 667 a~i~i~~a~~~d~~~~~siIILsd~d~~~~~~~~aDa~~l~t~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~ag~~~ 746 (856)
|.++.++ ++.||+-+. -.+...+|+++|+-.-.+++..|+. +-.+.+-++++.-.++.+.
T Consensus 361 a~~~~s~----------acfilsar~--~~~k~a~dehtilrswaikdfapnv-----~qyvqifr~e~k~hi~~ae--- 420 (1087)
T KOG3193|consen 361 ANVATSK----------ACFILSARH--VNRKVATDEHTILRSWAIKDFAPNV-----KQYVQIFRAETKMHIEHAE--- 420 (1087)
T ss_pred hhhcccc----------hheeeehhh--hccccccchhhHHHHHhhhhcCCch-----HHHhhhhchhhhhhhhhhe---
Confidence 9888433 577787543 3567889999999999999988772 3444566666655555431
Q ss_pred ceeehhhHHHHHHHHHhhcccHHHHHHH-------------------HHcc-CCCeEEEEec--cccccCCCCCCHHHHH
Q 003021 747 TYIAAEEIMSLVTAQVVENNELNEVWKD-------------------ILNA-EGDEIYVKDI--SLYMKEGENPSFFELS 804 (856)
Q Consensus 747 d~I~S~~iis~vlAq~a~n~~l~~v~~e-------------------Ll~~-eG~Ei~v~~~--~~~~~~g~~~sF~~L~ 804 (856)
.+|.-+++-=.++|.-..-|++..+... +.+. .|+|+|-... +++..+.++.||....
T Consensus 421 ~~icedefkyallannc~cpg~st~itll~htsrg~egq~s~e~whk~yg~~sgne~y~i~~~dskff~ey~gksfs~~s 500 (1087)
T KOG3193|consen 421 VLICEDEFKYALLANNCICPGISTFITLLMHTSRGEEGQKSTEPWHKVYGFHSGNEMYQIKVQDSKFFCEYVGKSFSSTS 500 (1087)
T ss_pred eEEehhhHHHHHHhcCCcCCCHHHHHHHHhhhccccccCCCCchHHHHhccccCCeEEEEEecccceeeeecccccchhh
Confidence 4455555555555655555666555544 3442 4778776443 4455566788887766
Q ss_pred HHH-HhcCcEEEEEEECC---eEEeCCCCCCCCccccCCCEEEEEec
Q 003021 805 ERA-HLRREVAIGYVKDN---KKVINPVPKSEPLSLTLTDSLIVISE 847 (856)
Q Consensus 805 ~~a-~~~g~ilIG~~~~~---~~iiNP~~k~~~~~l~~gD~LIVi~~ 847 (856)
..+ ++.|--+||+..++ ...+||.+. ..+++.|.+.-.+-
T Consensus 501 fhahk~ygi~li~v~p~~~~~~~~lnpg~~---hi~~~~dt~yym~l 544 (1087)
T KOG3193|consen 501 FHAHKEYGIGLIAVSPDGDTSRMKLNPGSS---HIIQPTDTVYYMGL 544 (1087)
T ss_pred hhhhhhcCeEEEEEcCCCCcceeecCCCcc---cccCCCCeEEEEec
Confidence 665 47898999998764 578999643 48999999877654
No 27
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=97.84 E-value=3.3e-06 Score=91.03 Aligned_cols=55 Identities=22% Similarity=0.447 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHhhhcccccccc---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003021 221 ETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMTEQFR 277 (856)
Q Consensus 221 ~~~s~~dalw~~~~~vt~st~g~gd---~T~~gRl~~v~l~l~Gi~~fa~li~~it~~l~ 277 (856)
...|..|||| |+++||+|+|||| .|..|++++-+-.++|++.+|.=+++|++-+.
T Consensus 390 ~F~SIPdaFW--wavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFn 447 (507)
T KOG1545|consen 390 HFSSIPDAFW--WAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFN 447 (507)
T ss_pred CCCcCcccce--EEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEeccc
Confidence 4578999999 9999999999998 78899999999999999998877777666544
No 28
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.00056 Score=69.16 Aligned_cols=137 Identities=13% Similarity=0.183 Sum_probs=97.1
Q ss_pred CCCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhccccc
Q 003021 592 GPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNI 671 (856)
Q Consensus 592 ~~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a~i~i 671 (856)
....|+++||||+.+..++..|... +..+.+++.. .++.+.+ ....+..+.||+++.++|.+++++
T Consensus 19 ~l~~~~ii~g~~~~g~~~~~~l~~~---~~~~~vi~~~--~~~~~~~--------~~~~~~~~~gd~~~~~~l~~a~~~- 84 (212)
T COG1226 19 RLKRHVIIVGFGRVGQIVARALLAS---GIPVVVIDSD--EDRVELL--------RELGLLVVLGDATREEVLEAAGIE- 84 (212)
T ss_pred cCCCCEEEEcCChHHHHHHHHHHHC---CCCEEEEECC--HHHHHHH--------HHCCCcEEEecCCCHHHHHhcChh-
Confidence 4679999999999999999999754 3367777763 2343332 233335699999999999999988
Q ss_pred cccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEec-ccchhHhhhcCCCcceee
Q 003021 672 QNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVD-SKLGKQIARNKPSLTYIA 750 (856)
Q Consensus 672 ~~a~~~d~~~~~siIILsd~d~~~~~~~~aDa~~l~t~L~~r~l~~~~g~~~~~IIaEi~~-~~~~~~l~~ag~~~d~I~ 750 (856)
++ . .+++..+. +..++.....++.++|. .++++...+ ..+...+..+|.+ +++.
T Consensus 85 -~a---~-----~vi~~~~~----------~~~~~~~~~~~~~~~p~-----~~i~~~~~~~~~~~~~l~~~G~~-~vi~ 139 (212)
T COG1226 85 -RA---R-----AVIVTLSD----------DATNVFIVLLARAINPE-----LEILARARDLDEAVETLTTVGAD-EVVP 139 (212)
T ss_pred -he---e-----EEEEecCC----------HHHHHHHHHHHHHHCCC-----CEEEEEeccchHHHHHHHHcCCC-eeec
Confidence 22 1 45554442 47888888889998877 579999998 6666788888755 5666
Q ss_pred hhhHHHHHHHHHhhccc
Q 003021 751 AEEIMSLVTAQVVENNE 767 (856)
Q Consensus 751 S~~iis~vlAq~a~n~~ 767 (856)
.....+..++..+..+.
T Consensus 140 ~~~~~~~~~~~~~~~~~ 156 (212)
T COG1226 140 PTFESALLLARAALVGL 156 (212)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 65555655555544443
No 29
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00017 Score=77.64 Aligned_cols=78 Identities=14% Similarity=0.341 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHhhhcccccccc----CC-------cchhHHHHHHHHHHHHH
Q 003021 196 FLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQ----RT-------RVERVIGFILAIWGILF 264 (856)
Q Consensus 196 ~~~~l~~~~~~iv~~g~~l~~~~eg~~~s~~dalw~~~~~vt~st~g~gd----~T-------~~gRl~~v~l~l~Gi~~ 264 (856)
++.++...|++++..|+..|...| ++|++||+| |..+|.+|.|+|| +. +..++++++.++.|+.+
T Consensus 160 l~~i~~~~~~~~i~~gaa~fs~~E--~Wsyfds~Y--yCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~v 235 (350)
T KOG4404|consen 160 LVLILFTACILLICCGAAMFSSVE--GWSYFDSYY--YCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCV 235 (350)
T ss_pred HHHHHHHHHHHHHHhhHHHhhccc--Ccchhhhhh--eeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHH
Confidence 456777888888888999998886 899999999 8889999999998 22 56889999999999988
Q ss_pred HHHHHHHHHHHHH
Q 003021 265 YSRLLSTMTEQFR 277 (856)
Q Consensus 265 fa~li~~it~~l~ 277 (856)
++.++-+++=.+.
T Consensus 236 i~a~~NllvLrf~ 248 (350)
T KOG4404|consen 236 IYALLNLLVLRFM 248 (350)
T ss_pred HHHHHHHHHHHHH
Confidence 8866665544333
No 30
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.53 E-value=0.00014 Score=82.37 Aligned_cols=230 Identities=14% Similarity=0.146 Sum_probs=152.4
Q ss_pred CCCCeEEEEeccc--cHHHHHHHHhcccCC--CceEEEEcCC-CchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHh
Q 003021 592 GPKERILLLGWRP--DVVEMIEEYDNYLGP--GSVLEILSDV-PLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKD 666 (856)
Q Consensus 592 ~~~~~vLI~Gw~r--~~~~li~eL~~~~~~--gs~v~Ii~~~-p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~ 666 (856)
..++||++||-=. .....++.+.+.... ..+|+.+... |+-|.+..+++ .-.+|.|.+|...+...|.+
T Consensus 355 hgkkhivvcghityesvshflkdflhedrddvdvevvflhr~~pdleleglfkr------hft~veffqgtvmnp~dl~r 428 (1103)
T KOG1420|consen 355 HGKKHIVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELEGLFKR------HFTQVEFFQGTVMNPHDLAR 428 (1103)
T ss_pred cCCeeEEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchHHHHhh------heeeEEEecccccChhhhhh
Confidence 4689999998642 223334444332222 4556666654 55555544332 34678999999999999999
Q ss_pred ccccccccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEecccchhHhhhc----
Q 003021 667 TIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARN---- 742 (856)
Q Consensus 667 a~i~i~~a~~~d~~~~~siIILsd~d~~~~~~~~aDa~~l~t~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~a---- 742 (856)
..|+ + +| +++||+..- -.+|...|+.||+.+..+|++.++ +++|..+..-.|...+-..
T Consensus 429 vki~--~---ad-----aclvlanky--c~dpdaedaanimrvisiknys~d-----irvi~qlmqyhnkayllnipswd 491 (1103)
T KOG1420|consen 429 VKIE--S---AD-----ACLVLANKY--CADPDAEDAANIMRVISIKNYSPD-----IRVITQLMQYHNKAYLLNIPSWD 491 (1103)
T ss_pred eecc--c---cc-----eeeeecccc--cCCCChhhhhhheEEEEeccCCCc-----hhHHHHHHHhhchheeecCCCcc
Confidence 9887 2 35 899998642 257888999999999999997777 5777766665554333211
Q ss_pred -CCCcceeehhhHHHHHHHHHhhcccHHHHHHHHHc-------------------cCCCeEEEEeccccccCCCCCCHHH
Q 003021 743 -KPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILN-------------------AEGDEIYVKDISLYMKEGENPSFFE 802 (856)
Q Consensus 743 -g~~~d~I~S~~iis~vlAq~a~n~~l~~v~~eLl~-------------------~eG~Ei~v~~~~~~~~~g~~~sF~~ 802 (856)
..++|+|.-.|+--..+||...-|+.......|+. .-|.|+|-...+. ...+++|.+
T Consensus 492 wk~gddviclaelklgfiaqsclapgfstmmanlfamrsfktsp~~~~w~ndylrg~gmemyte~lsp---~f~g~sfp~ 568 (1103)
T KOG1420|consen 492 WKEGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKTSPEEDTWQNDYLRGVGMEMYTEYLSP---AFVGLSFPT 568 (1103)
T ss_pred cccCCceEEehhhhhhhhHHHhhcccHHHHHHHHHHHHhccCCcccchhHHHHHhhcchhHhhhhcCH---hhcCCchHH
Confidence 12558888888877778888888887776666554 1244555544433 236899999
Q ss_pred HHHHHH-hcCcEEEEEEE--C----CeEEeCCCCCCCCccccCCCEEEEEecCCC
Q 003021 803 LSERAH-LRREVAIGYVK--D----NKKVINPVPKSEPLSLTLTDSLIVISELEG 850 (856)
Q Consensus 803 L~~~a~-~~g~ilIG~~~--~----~~~iiNP~~k~~~~~l~~gD~LIVi~~~e~ 850 (856)
..+... +-+-.++++.. . ....|||.+ ..++++|..=..|+.+..
T Consensus 569 a~elcf~klkllllaie~k~een~es~i~inpg~---h~kiq~~tqgffiaqsad 620 (1103)
T KOG1420|consen 569 ACELCFVKLKLLLLAIEYKDEENRESRILINPGN---HLKIQEGTQGFFIAQSAD 620 (1103)
T ss_pred HHHHHHHHHHHhheeeeeccccCccceeEeCCCC---CceeccCCceEEEecchH
Confidence 988873 44555555533 2 357899963 358999998777776543
No 31
>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit; the pore-forming (alpha) subunits and smaller accessory (beta) subunits. The alpha subunit of the BK channel was initially thought to share the characteristic 6TM organisation of the voltage-gated K+ channels. However, the molecule is now thought to possess an additional TM domain, with an extracellular N terminus and intracellular C terminus. This C-terminal region contains 4 predominantly hydrophobic domains, which are also thought to lie intracellularly. The extracellular N terminus and the first TM region are required for modulation by the beta subunit. The precise location of the Ca2+-binding site that modulates channel activation remains unknown, but it is thought to lie within the C-terminal hydrophobic domains.; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 3NAF_A 3MT5_A 3U6N_E.
Probab=97.48 E-value=0.00028 Score=65.14 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=55.7
Q ss_pred cCCCeEEehHHHHHHHHHHHHccCCHHHHHHHHhcc--------------------cCcEEEEecCC-CCCCCCHHHHHc
Q 003021 432 LSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNY--------------------RKNIFNLWSFP-NLAGIKYRQLRR 490 (856)
Q Consensus 432 ~g~~~Vi~~~~i~~~lLaq~~~~Pgl~~v~~~Ll~f--------------------~g~E~~v~~~p-~l~G~tf~el~~ 490 (856)
.++++||+.+++.-.+||+++..||+++++.+|+.. .++|+|....| .+.|++|.++..
T Consensus 8 ~~~d~vIc~~elK~~lLA~sc~~PG~sTLi~NL~~s~~~~~~~~~~~~W~~eY~~G~~~eIy~~~l~~~f~G~~F~~~~~ 87 (101)
T PF03493_consen 8 KFADQVICIEELKLGLLAQSCLCPGFSTLITNLFHSSSGDESQEEPEQWISEYLRGAGNEIYTVKLSSAFVGMTFTEAAR 87 (101)
T ss_dssp TTT-EEEEHHHHHHHHHHHHHHSTTHHHHHHHTTS-------SS--SSHHHHHHHHHTBEEEEEE--GGGTTSBHHHHHH
T ss_pred ccCceEEEHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCccccccccHHHHHHHHcCCCCEEEEEeCChhhCCCcHHHHHH
Confidence 456899999999999999999999999999998763 13799998876 699999999877
Q ss_pred c-CC--ceEEEEEE
Q 003021 491 G-FQ--EAVVCGLY 501 (856)
Q Consensus 491 ~-~~--~aivIGI~ 501 (856)
. ++ +++++||+
T Consensus 88 ~~~~~~~viLigIe 101 (101)
T PF03493_consen 88 LLYEKFGVILIGIE 101 (101)
T ss_dssp HHHHHS--EEEEEE
T ss_pred HHHHHcCcEEEEeC
Confidence 4 43 79999985
No 32
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.0003 Score=70.15 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=53.2
Q ss_pred cEEEEecCCCCCCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEecCCCC
Q 003021 470 NIFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGK 531 (856)
Q Consensus 470 ~E~~v~~~p~l~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa~~~~~ 531 (856)
..+.+.+.|.++|+|++|+...-. ++-||+|+|+++-+++|+.|+.|++||.|++-|++.+.
T Consensus 121 ~rv~v~~~S~l~gktLg~l~L~t~tGvrVIAIRRG~~wi~~Pd~~~~Ir~gDvLIarG~~~g~ 183 (204)
T COG3273 121 VRVRVEKGSELAGKTLGELDLATNTGVRVIAIRRGERWIYGPDEDTKIREGDVLIARGTDAGV 183 (204)
T ss_pred EEEEecCCCeecccchhhhccccccceEEEEEecCCccccCCCccceeccCCEEEEecchhhH
Confidence 345666788999999999987755 89999999988778999999999999999999887644
No 33
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.0027 Score=69.11 Aligned_cols=203 Identities=14% Similarity=0.046 Sum_probs=120.2
Q ss_pred CeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH-
Q 003021 295 DHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER- 373 (856)
Q Consensus 295 ~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r- 373 (856)
+.|+|+|-|..+..+++-++.... .+. -.+|+ ..+.+..+.-. .....++.|-++++...|+.
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~~~----~~~-----f~~vv--~~~qe~~~~~~-----~~e~~~fh~fdaTs~~rl~~~ 65 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRHYS----NHN-----FYIVV--VKNQESLIPKN-----YPETFAFHCFDATSSFRLLQV 65 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHHhc----Cce-----EEEEE--eechhhccccc-----CcceEEEEEeCCccHHHHHHH
Confidence 458999999999999998876533 111 13333 33333322211 12256888999998877664
Q ss_pred cCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCE-EEEEeC--cCcHHHHHhcCCCeEEehHHHHHHHHHH
Q 003021 374 AAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPT-IVEVSN--PNTCELLKSLSGLKVEPVENVASKLFVQ 450 (856)
Q Consensus 374 A~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~i-Iaev~d--~~~~~~l~~~g~~~Vi~~~~i~~~lLaq 450 (856)
.+-+-.+|+|+.-+ --++..+.=++|... ++..+ |.-..| ++|.+ .+..-.+ .+...+.+++..-.
T Consensus 66 ~n~~~~~Afi~~qd-------~~et~~i~k~lr~~f--~n~e~ei~~~~~~l~~Nee-~~d~k~~-lid~~~vL~~~F~~ 134 (471)
T COG3400 66 LNDEVSDAFIIIQD-------FKETRIIHKILRTHF--KNMEVEISVKRDELENNEE-NKDEKLI-LIDEFEVLANKFIS 134 (471)
T ss_pred hhhHhhhhheehhh-------HHHHHHHHHHHHHhc--cCcEEEEEEEeCCCccchh-hccccee-ecchHHHHHHHHHH
Confidence 45556676665433 233444445566544 44444 334444 33433 2222111 22223444433322
Q ss_pred HHccCCHHHHHHHHhcccC---cEEEEecCCCCCCCCHHHHHccCCceEEEEEEECCEEEECCCCCceecCCCEEEEEec
Q 003021 451 CSRQKGLIKIYRHLLNYRK---NIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAP 527 (856)
Q Consensus 451 ~~~~Pgl~~v~~~Ll~f~g---~E~~v~~~p~l~G~tf~el~~~~~~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa~ 527 (856)
.+ |++...-.. .+.+. .|+.+..++.|+=+.+++++. +...+++++|+|++ +-|.++.+|+|||+++|+|+
T Consensus 135 ~L--p~I~~tp~~-iGLgkGEImEI~vp~gSifaYrhi~sI~q--k~~RIvl~YRN~kl-ll~~~slvlqp~D~lLVvG~ 208 (471)
T COG3400 135 RL--PNIPSTPRE-IGLGKGEIMEIDVPFGSIFAYRHIGSIRQ--KEYRIVLLYRNDKL-LLSTKSLVLQPRDILLVVGN 208 (471)
T ss_pred hc--CCccccchh-cccccceEEEEecCCCchhhhhhhhhhhh--heeEEEEEEECCEE-EEeccceEecCCCEEEEeCC
Confidence 22 443322111 12222 677777788898888888854 46899999999995 78999999999999999999
Q ss_pred CCC
Q 003021 528 IHG 530 (856)
Q Consensus 528 ~~~ 530 (856)
+.-
T Consensus 209 P~~ 211 (471)
T COG3400 209 PEI 211 (471)
T ss_pred hHH
Confidence 753
No 34
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0011 Score=65.19 Aligned_cols=63 Identities=24% Similarity=0.322 Sum_probs=49.5
Q ss_pred eEEEEeccccccCCCCCCHHHHHHHHHhcCcEEEEEEECCeEEeCCCCCCCCccccCCCEEEEEecCCCCC
Q 003021 782 EIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEGEQ 852 (856)
Q Consensus 782 Ei~v~~~~~~~~~g~~~sF~~L~~~a~~~g~ilIG~~~~~~~iiNP~~k~~~~~l~~gD~LIVi~~~e~~~ 852 (856)
++++...+.+ .+.|-+++..+ +++|.++||+++.++++++|.|- .++++||.|||+++....+
T Consensus 89 ~~~i~~~s~~----~GksiGdl~ir-q~TGaTIIAI~r~~e~I~SPgPy---~vle~gDtlvviG~~~~~~ 151 (162)
T COG0490 89 WFKIEAGSPF----IGKTIGDLNIR-QNTGATVIAIVRNEEKILSPGPY---TVLEAGDTLVVIGEETGLK 151 (162)
T ss_pred eeeeecCCcc----cCcchhhcccc-cccCcEEEEEEecCcEecCCCch---hhhcCCCEEEEEecchHhH
Confidence 5677776654 34555666555 38999999999999999999754 4999999999999876644
No 35
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.78 E-value=0.0074 Score=73.06 Aligned_cols=52 Identities=17% Similarity=0.405 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhhccccccccCC---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003021 225 LEDCLWEAWACLISSSTHLKQRT---RVERVIGFILAIWGILFYSRLLSTMTEQFRN 278 (856)
Q Consensus 225 ~~dalw~~~~~vt~st~g~gd~T---~~gRl~~v~l~l~Gi~~fa~li~~it~~l~~ 278 (856)
+..|+| |.+.|++|+|||+.+ ....+|+++++++|+++||.+||-|+..++.
T Consensus 295 Y~~aLy--w~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs 349 (727)
T KOG0498|consen 295 YVYALY--WGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQS 349 (727)
T ss_pred HHHHHH--HHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHH
Confidence 567999 888889999999844 5789999999999999999999988776663
No 36
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.00035 Score=76.28 Aligned_cols=93 Identities=16% Similarity=0.346 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHH-HHHHHHHHHhhhhhhc----CCCCCHHHHHHHHHHhhhcccccccc---CCcc
Q 003021 178 LARLLYLFNVQLERNVATFLVVLAVV-CFSFVVFGGFLFFKFR----DETQSLEDCLWEAWACLISSSTHLKQ---RTRV 249 (856)
Q Consensus 178 ~~rl~y~fd~~~~~~~~~~~~~l~~~-~~~iv~~g~~l~~~~e----g~~~s~~dalw~~~~~vt~st~g~gd---~T~~ 249 (856)
+.-|.|-+..-.+- +.+|++. +.+++++.++.||..- ....|...||| ++++|++|.|||| .|..
T Consensus 310 LRILGYTLKSCASE-----LGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFW--YTIVTmTTLGYGDMVp~TIa 382 (632)
T KOG4390|consen 310 LRILGYTLKSCASE-----LGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFW--YTIVTMTTLGYGDMVPSTIA 382 (632)
T ss_pred cchhhhhHHHHHHH-----HhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHh--hheeeeeeccccccchHHHH
Confidence 34466766554332 2233332 2234444445554322 24568899999 8999999999999 6778
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003021 250 ERVIGFILAIWGILFYSRLLSTMTEQFR 277 (856)
Q Consensus 250 gRl~~v~l~l~Gi~~fa~li~~it~~l~ 277 (856)
|++|+-+-.++|+++++.-+++|++-+.
T Consensus 383 GKIfGsiCSLSGVLVIALPVPvIVSNFS 410 (632)
T KOG4390|consen 383 GKIFGSICSLSGVLVIALPVPVIVSNFS 410 (632)
T ss_pred HHHhhhhhcccceEEEeccccEEEechh
Confidence 9999999999999988877776666554
No 37
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=96.59 E-value=0.0096 Score=66.53 Aligned_cols=106 Identities=11% Similarity=0.181 Sum_probs=63.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhc-------C------------CCCCHHHHHHHHHHhhhcccccccc--C
Q 003021 188 QLERNVATFLVVLAVVCFSFVVFGGFLFFKFR-------D------------ETQSLEDCLWEAWACLISSSTHLKQ--R 246 (856)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~~iv~~g~~l~~~~e-------g------------~~~s~~dalw~~~~~vt~st~g~gd--~ 246 (856)
.+.-.+...+.+++++-++..+++|++|+.+. + .-.+|.+||| |.+=|.+|+|||. .
T Consensus 29 lv~~~W~~~l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~--FSveT~tTIGYG~~~~ 106 (336)
T PF01007_consen 29 LVDMSWRWFLLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFL--FSVETQTTIGYGSRYP 106 (336)
T ss_dssp HHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHH--HHHHHHTT---SSSEB
T ss_pred ccCCCeeeeeehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhhee--EEEEEEEEeccCCccc
Confidence 33444443344444444455566666665421 1 1268999999 5555666777775 2
Q ss_pred C---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccccCCCeEEEEcC
Q 003021 247 T---RVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGA--QMQVLESDHIIVCGV 302 (856)
Q Consensus 247 T---~~gRl~~v~l~l~Gi~~fa~li~~it~~l~~~~~~lr~G~--~~~v~~~~HiII~G~ 302 (856)
+ +.+-++..+-.++|+++.++++|++...+. +++ ...+..++|.||+-.
T Consensus 107 ~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~s-------rP~~R~~tI~FS~~AVI~~~ 160 (336)
T PF01007_consen 107 TPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFS-------RPKKRASTILFSKKAVIAPR 160 (336)
T ss_dssp -CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SCCCGGGSEEE-SSEEEEEE
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CcccccceEEEEeeeEEeec
Confidence 3 467777888899999999999988876443 232 123567999999865
No 38
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=95.56 E-value=0.022 Score=68.21 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=53.1
Q ss_pred cEEEEecCCCCCCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEecCCCCC
Q 003021 470 NIFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKK 532 (856)
Q Consensus 470 ~E~~v~~~p~l~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa~~~~~~ 532 (856)
..+.+.+.++++|+|+.|+..+.+ ++.+++++|+|+. ++|.+|++|++||.+++.|+.++..
T Consensus 220 r~~~V~~~s~liGkTl~el~~~~~~~v~I~~I~R~g~~-~~p~~dtvL~~GD~L~V~G~~e~L~ 282 (562)
T TIGR03802 220 RAYRVNRASSLIGKTVGDLENLFAGRVTIERIRRDGKL-LTVSPDLVLNAGDVVLVVGRRDAVV 282 (562)
T ss_pred EEEEECCCcccCCCcHHHHHhhhCCCeEEEEEEECCEE-EcCCCCCeeCCCCEEEEEECHHHHH
Confidence 456666667899999999988766 8999999999986 4799999999999999999987653
No 39
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.063 Score=61.96 Aligned_cols=51 Identities=18% Similarity=0.389 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhcccccccc---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003021 225 LEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMTEQFR 277 (856)
Q Consensus 225 ~~dalw~~~~~vt~st~g~gd---~T~~gRl~~v~l~l~Gi~~fa~li~~it~~l~ 277 (856)
+..++| |++.+++|+|||. .|+..++|++.+++.|-++++++.|-++..++
T Consensus 424 YissLY--fTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~Q 477 (971)
T KOG0501|consen 424 YISSLY--FTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQ 477 (971)
T ss_pred ehhhhh--hhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 788999 8888899999996 67899999999999999999999997776655
No 40
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.33 E-value=0.024 Score=68.14 Aligned_cols=60 Identities=23% Similarity=0.341 Sum_probs=50.7
Q ss_pred cEEEEecCCCCCCCCHHHHHccCCceEEEEEEECCEEEECCCCCceecCCCEEEEEecCCCC
Q 003021 470 NIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGK 531 (856)
Q Consensus 470 ~E~~v~~~p~l~G~tf~el~~~~~~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa~~~~~ 531 (856)
.|+.+.+.++++|++.+|+.. .+++.++++.|+|+. +.|++++++++||++++++++++.
T Consensus 417 ~~~~V~~~s~~~G~~l~el~l-p~~~~i~~v~R~g~~-~~p~~~t~L~~GD~l~l~~~~~~l 476 (562)
T PRK05326 417 LEYRVPAGSWLVGKALRDLRL-PRGALIALIIRDGKL-LVPTGSTRLKAGDVLLVLGPERDL 476 (562)
T ss_pred EEEEECCCCcccCCCHHHcCC-CCCcEEEEEEECCEE-eCCCCCCeECCCCEEEEEECHHHH
Confidence 355566677899999999954 237999999999995 799999999999999999988655
No 41
>PRK03818 putative transporter; Validated
Probab=95.11 E-value=0.024 Score=67.75 Aligned_cols=63 Identities=19% Similarity=0.148 Sum_probs=53.4
Q ss_pred cEEEEecCCCCCCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEecCCCCCC
Q 003021 470 NIFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKK 533 (856)
Q Consensus 470 ~E~~v~~~p~l~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa~~~~~~~ 533 (856)
.|..+.+.|+++|+|++|+.++.+ ++.+.+|+|+|+ .+.|.+|++|+.||++.+.++.++..+
T Consensus 291 ~E~Vvv~~S~liGkTL~eL~~r~~~Gv~VlaI~R~g~-~l~~~~d~~Lq~GD~LlVvG~~~~i~~ 354 (552)
T PRK03818 291 SERVVVTNEKVLGKKLRDLHLKNKYGVVISRLNRAGV-ELVASPDLSLQFGDILNLVGRPEAIDA 354 (552)
T ss_pred EEEEEEcChhccCCcHHHhcccccCCeEEEEEeECCe-ecCCCCCCEEecCCEEEEEECHHHHHH
Confidence 466667788999999999987755 899999999887 467888999999999999999876543
No 42
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=94.87 E-value=0.043 Score=62.53 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHhhhcccccccc---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003021 221 ETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKL 283 (856)
Q Consensus 221 ~~~s~~dalw~~~~~vt~st~g~gd---~T~~gRl~~v~l~l~Gi~~fa~li~~it~~l~~~~~~l 283 (856)
..++|.+|+|++++ +.+|.|||+ .|.+||+++++-.++|+-++.++++-+...+...+..+
T Consensus 112 ~~W~f~~al~fs~t--v~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~ 175 (433)
T KOG1418|consen 112 QQWSFSSALLFSIT--VITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKL 175 (433)
T ss_pred cceecchhHhhhhh--eeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999995554 455667775 67899999999999999888888887777777666554
No 43
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.75 E-value=0.71 Score=50.93 Aligned_cols=208 Identities=12% Similarity=0.086 Sum_probs=111.1
Q ss_pred CeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhcccccccc
Q 003021 595 ERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNS 674 (856)
Q Consensus 595 ~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a~i~i~~a 674 (856)
++|+|+|-|+.+...++.+....+-+.-.+++.. +.|.. . ..-.-..+.+++=|||+-..|++. ++ +.
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~~~~~~f~~vv~~--~qe~~---~----~~~~~e~~~fh~fdaTs~~rl~~~-~n--~~ 69 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRHYSNHNFYIVVVK--NQESL---I----PKNYPETFAFHCFDATSSFRLLQV-LN--DE 69 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHHhcCceEEEEEee--chhhc---c----cccCcceEEEEEeCCccHHHHHHH-hh--hH
Confidence 5789999999999999998765455554455443 22221 1 122235677899999999999875 22 11
Q ss_pred ccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEe-cccchhHhhhcCCCcceeehhh
Q 003021 675 FKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIV-DSKLGKQIARNKPSLTYIAAEE 753 (856)
Q Consensus 675 ~~~d~~~~~siIILsd~d~~~~~~~~aDa~~l~t~L~~r~l~~~~g~~~~~IIaEi~-~~~~~~~l~~ag~~~d~I~S~~ 753 (856)
..+ ++|+.-|. .++..+.-.+|...++.. ..|+.... .+.|. ..+... .+.+-..+
T Consensus 70 -~~~-----Afi~~qd~-----------~et~~i~k~lr~~f~n~e---~ei~~~~~~l~~Ne-e~~d~k--~~lid~~~ 126 (471)
T COG3400 70 -VSD-----AFIIIQDF-----------KETRIIHKILRTHFKNME---VEISVKRDELENNE-ENKDEK--LILIDEFE 126 (471)
T ss_pred -hhh-----hheehhhH-----------HHHHHHHHHHHHhccCcE---EEEEEEeCCCccch-hhcccc--eeecchHH
Confidence 122 67777663 466666677777666643 23444444 34442 222211 12222222
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHccCCCeEEEEeccccccCCCCCCHHHHHHHHHhcCcEEEEEEECCeEEeCCCCCCCC
Q 003021 754 IMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEP 833 (856)
Q Consensus 754 iis~vlAq~a~n~~l~~v~~eLl~~eG~Ei~v~~~~~~~~~g~~~sF~~L~~~a~~~g~ilIG~~~~~~~iiNP~~k~~~ 833 (856)
.++...-... |++..-=.+ .+-+--||.-.+.+. |...-|.-+... +++..-++++.|.+...+ |. + .
T Consensus 127 vL~~~F~~~L--p~I~~tp~~-iGLgkGEImEI~vp~----gSifaYrhi~sI-~qk~~RIvl~YRN~klll-~~-~--s 194 (471)
T COG3400 127 VLANKFISRL--PNIPSTPRE-IGLGKGEIMEIDVPF----GSIFAYRHIGSI-RQKEYRIVLLYRNDKLLL-ST-K--S 194 (471)
T ss_pred HHHHHHHHhc--CCccccchh-cccccceEEEEecCC----Cchhhhhhhhhh-hhheeEEEEEEECCEEEE-ec-c--c
Confidence 2222211110 111111111 121111555555443 233333334333 256777777777766555 43 2 4
Q ss_pred ccccCCCEEEEEecCC
Q 003021 834 LSLTLTDSLIVISELE 849 (856)
Q Consensus 834 ~~l~~gD~LIVi~~~e 849 (856)
+++++||+|.|+|+++
T Consensus 195 lvlqp~D~lLVvG~P~ 210 (471)
T COG3400 195 LVLQPRDILLVVGNPE 210 (471)
T ss_pred eEecCCCEEEEeCChH
Confidence 7999999999999865
No 44
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=94.68 E-value=0.038 Score=66.23 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=52.7
Q ss_pred cEEEEecCCCCCCCCHHHHHcc-----CCceEEEEEEECCEEEECCCCCceecCCCEEEEEecCCCCCC
Q 003021 470 NIFNLWSFPNLAGIKYRQLRRG-----FQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKK 533 (856)
Q Consensus 470 ~E~~v~~~p~l~G~tf~el~~~-----~~~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa~~~~~~~ 533 (856)
.|..+.+.++++|+|++|+.++ ..++.+.+|+|+|+. +.|.+|++|+.||++.+.++.++..+
T Consensus 304 ~e~VV~~~S~liGkTL~eL~~r~~~~~~~Gv~Vl~I~R~g~~-i~~~~d~~L~~GD~LlV~G~~~~l~~ 371 (562)
T TIGR03802 304 TKDVVLTNKEYNGKTVAEILKNAQQFMRHGVYVEKIKRDDQP-LPILPETVLQRGDVVTLVGTPQDVDR 371 (562)
T ss_pred EEEEEECCcccCCccHHHHhccccccccCCeEEEEEeeCCcc-ccCCCCCEecCCCEEEEEeCHHHHHH
Confidence 4556667889999999999865 238999999998874 58899999999999999999875533
No 45
>PRK03818 putative transporter; Validated
Probab=94.62 E-value=0.061 Score=64.35 Aligned_cols=61 Identities=18% Similarity=0.161 Sum_probs=52.8
Q ss_pred cEEEEecCCCCCCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEecCCCCC
Q 003021 470 NIFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKK 532 (856)
Q Consensus 470 ~E~~v~~~p~l~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa~~~~~~ 532 (856)
.|+.+. .++++|+|..|+..+.+ +..+.++.|+|+ ...|.+|++|++||.+++.++.++..
T Consensus 207 r~~~V~-~s~liGkTv~el~~~~~~~v~V~~I~R~g~-~~~p~~~~~L~~GDiLlV~G~~e~l~ 268 (552)
T PRK03818 207 INIRVE-NPNLHGKAIKDVPILNGDKFVCSRLKRGDT-LMVPSPDTIIQLGDLLHLVGQPEDLH 268 (552)
T ss_pred EEEEEe-CCCCCCCcHHHHHhhhCCCEEEEEEEECCE-EECCCCCCccCCCCEEEEEECHHHHH
Confidence 567776 77899999999988766 799999999997 57899999999999999999987653
No 46
>PRK04972 putative transporter; Provisional
Probab=94.56 E-value=0.037 Score=66.19 Aligned_cols=63 Identities=14% Similarity=0.051 Sum_probs=52.3
Q ss_pred cEEEEecCCCCCCCCHHHHHccCCceEEEEEEECCEEEECCCCCceecCCCEEEEEecCCCCCC
Q 003021 470 NIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKK 533 (856)
Q Consensus 470 ~E~~v~~~p~l~G~tf~el~~~~~~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa~~~~~~~ 533 (856)
.|..+.+.++++|+|++|+..+..++.+.+|+|+|. .+.|.+|++|+.||+|.+.++.++..+
T Consensus 304 ~E~vVv~~s~liGkTL~eL~~r~~gv~Vl~I~R~g~-~~~~~~~~~L~~GD~LlVvG~~~~i~~ 366 (558)
T PRK04972 304 TEEIVVKNHNAVGKRLSQLKLTDHGCFLNRVIRSQI-EMPIDDNVVLNKGDVLQVSGDARRVKT 366 (558)
T ss_pred EEEEEEcCcccCCCCHHHhCCccCCeEEEEEecCCc-ccCCCCCCEecCCCEEEEEECHHHHHH
Confidence 566677889999999999987634899999999664 467888999999999999999876543
No 47
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=94.41 E-value=0.057 Score=45.82 Aligned_cols=58 Identities=22% Similarity=0.202 Sum_probs=36.5
Q ss_pred eEEEEeccccccCCCCCCHHHHHHHHH--hcCcEEEEEEECCeEEeCCCCCCCCccccCCCEEEEEecCCC
Q 003021 782 EIYVKDISLYMKEGENPSFFELSERAH--LRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEG 850 (856)
Q Consensus 782 Ei~v~~~~~~~~~g~~~sF~~L~~~a~--~~g~ilIG~~~~~~~iiNP~~k~~~~~l~~gD~LIVi~~~e~ 850 (856)
|+.+.+.+.+++ + .|.+... ..+..++|++|+ +..+.|.+ ..++++||.|+++++.+.
T Consensus 3 e~~V~~~s~~~g--k-----~l~el~l~~~~~~~i~~i~R~-~~~~~p~~---~~~l~~gD~l~v~g~~~~ 62 (71)
T PF02080_consen 3 EVRVPENSPLVG--K-----TLKELDLPERYGVRIVAIKRG-GEIIIPDG---DTVLQAGDILIVVGDPED 62 (71)
T ss_dssp EEE--TTBTTTT--E-----BHHHCTHHCHHTEEEEEEEET-EEEES--T---T-BE-TTEEEEEEEEHHH
T ss_pred EEEECCCCCCCC--C-----CHHHCCCCccCCEEEEEEEEC-CEEECCCC---CCEECCCCEEEEEECHHH
Confidence 455666565532 3 4554222 349999999877 88888875 359999999999997653
No 48
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=94.31 E-value=0.055 Score=58.84 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHhhhcccccccc---CCcchhHHHHHHHHHHHH
Q 003021 220 DETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGIL 263 (856)
Q Consensus 220 g~~~s~~dalw~~~~~vt~st~g~gd---~T~~gRl~~v~l~l~Gi~ 263 (856)
|..+.|.-||| |.++..+|.|||- .|.+||+|.|+-.++|+-
T Consensus 76 g~qWkF~GaFY--Fa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gip 120 (350)
T KOG4404|consen 76 GPQWKFAGAFY--FATTVITTIGYGHSTPSTDGGKAFCMFYALVGIP 120 (350)
T ss_pred ccccccCcceE--EEEEEEeeeccCCCCCCCcCceehhhhHHHhcCc
Confidence 56688999999 7777788888884 677999999999999983
No 49
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=93.41 E-value=0.3 Score=55.52 Aligned_cols=76 Identities=16% Similarity=0.249 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhhhhhcC------CCCCHHHHHHHHHHhhhcccccccc---CCcchhHHHHHHHHHHHHHHHHHHH
Q 003021 200 LAVVCFSFVVFGGFLFFKFRD------ETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLS 270 (856)
Q Consensus 200 l~~~~~~iv~~g~~l~~~~eg------~~~s~~dalw~~~~~vt~st~g~gd---~T~~gRl~~v~l~l~Gi~~fa~li~ 270 (856)
|+++++.+.++.++.+-+-|. ...++..+.| +..+|.-+.|||| .|-.||.++++.-++|.+.-|++++
T Consensus 257 L~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmW--li~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvA 334 (489)
T KOG3684|consen 257 LLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMW--LIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVA 334 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHH--HHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHH
Confidence 344444444444555444342 2345999999 7888888899998 6678999999999999999999988
Q ss_pred HHHHHHH
Q 003021 271 TMTEQFR 277 (856)
Q Consensus 271 ~it~~l~ 277 (856)
.++-.++
T Consensus 335 visRKLe 341 (489)
T KOG3684|consen 335 VIARKLE 341 (489)
T ss_pred HHHHHHH
Confidence 8877655
No 50
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.36 E-value=0.28 Score=48.92 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...+++|+|.|+.+...++.|.+++. .|+|+++.-.+++.++ ....+ ..+.|+
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga-------------~V~VIsp~~~~~l~~l--------~~i~~------~~~~~~ 64 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGA-------------FVTVVSPEICKEMKEL--------PYITW------KQKTFS 64 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-------------EEEEEcCccCHHHHhc--------cCcEE------EecccC
Confidence 46789999999999999999998765 5666543322233221 12222 245677
Q ss_pred HcCccccCeEEEecCCCCCCcchHHHHHHHHH
Q 003021 373 RAAANKARAIIILPTKGDRYEVDTDAFLSVLA 404 (856)
Q Consensus 373 rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLA 404 (856)
.++++.|+. ++++++++ +.|...+..+
T Consensus 65 ~~dl~~a~l-ViaaT~d~----e~N~~i~~~a 91 (157)
T PRK06719 65 NDDIKDAHL-IYAATNQH----AVNMMVKQAA 91 (157)
T ss_pred hhcCCCceE-EEECCCCH----HHHHHHHHHH
Confidence 788999995 44555443 4554444444
No 51
>PRK04972 putative transporter; Provisional
Probab=93.05 E-value=0.18 Score=60.38 Aligned_cols=50 Identities=26% Similarity=0.327 Sum_probs=44.8
Q ss_pred CCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEecCCCC
Q 003021 481 AGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGK 531 (856)
Q Consensus 481 ~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa~~~~~ 531 (856)
.|||++|+..+.. ++.+.++.|+|++ ..|.+|++|++||++++.++.++.
T Consensus 229 ~Gktl~el~~~~~~~v~I~~I~R~g~~-~~p~~dt~L~~GDiL~V~G~~e~l 279 (558)
T PRK04972 229 DGKNLRELGIYRQTGCYIERIRRNGIL-ANPDGDAVLQMGDEIALVGYPDAH 279 (558)
T ss_pred CCCCHHHHHhhcCCCEEEEEEEECCEE-ecCCCCCEeCCCCEEEEEECHHHH
Confidence 7999999988766 7999999999984 789999999999999999998754
No 52
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.57 E-value=0.62 Score=53.50 Aligned_cols=51 Identities=14% Similarity=0.293 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhhcccccccc--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003021 225 LEDCLWEAWACLISSSTHLKQ--RTRVERVIGFILAIWGILFYSRLLSTMTEQFR 277 (856)
Q Consensus 225 ~~dalw~~~~~vt~st~g~gd--~T~~gRl~~v~l~l~Gi~~fa~li~~it~~l~ 277 (856)
+.-++| |.++|.+|.|--| .|...-+|.++=+++|+++||+++|-+.+.+.
T Consensus 184 Y~~S~Y--WStLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVt 236 (536)
T KOG0500|consen 184 YLYSLY--WSTLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVT 236 (536)
T ss_pred HHHHHH--HHhhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHH
Confidence 345899 8899999998775 77888999999999999999999986665554
No 53
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=92.31 E-value=1.1 Score=44.72 Aligned_cols=48 Identities=15% Similarity=0.299 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHhhhcccccccc---C-----CcchhHHH-HHHHHHHHHHHHHHHHHH
Q 003021 223 QSLEDCLWEAWACLISSSTHLKQ---R-----TRVERVIG-FILAIWGILFYSRLLSTM 272 (856)
Q Consensus 223 ~s~~dalw~~~~~vt~st~g~gd---~-----T~~gRl~~-v~l~l~Gi~~fa~li~~i 272 (856)
.++..++| |...+++|.|+++ . +..+.++. .+++++++++++.++|.|
T Consensus 144 ~~~~~s~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 144 DSFGESLY--WLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp SSHHHHHH--HHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccc--ccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 67999999 5555666777776 2 45677776 666777778888888865
No 54
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.28 E-value=0.59 Score=54.61 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHhhhccccccc--cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003021 220 DETQSLEDCLWEAWACLISSSTHLK--QRTRVERVIGFILAIWGILFYSRLLSTMTEQFRN 278 (856)
Q Consensus 220 g~~~s~~dalw~~~~~vt~st~g~g--d~T~~gRl~~v~l~l~Gi~~fa~li~~it~~l~~ 278 (856)
|.++++..|+| |++-|..|.|.- +.|...-+|..+-.+.|+++||.|||-|=+.+.+
T Consensus 399 g~Gn~YiRCyy--fa~kt~~tiG~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 399 GEGNEYIRCYY--FAVKTLITIGGLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGA 457 (815)
T ss_pred CCCCceeeehh--hHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999 555555555443 3666677788888999999999999977776664
No 55
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.95 E-value=0.48 Score=47.28 Aligned_cols=34 Identities=9% Similarity=0.198 Sum_probs=28.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCC
Q 003021 593 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDV 629 (856)
Q Consensus 593 ~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~ 629 (856)
..++|+|+|+|+.+...++.|.+ .|..|++++..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~---~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKD---TGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---CCCEEEEEcCc
Confidence 35899999999999999999964 57789999753
No 56
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=90.50 E-value=0.47 Score=47.93 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHhcCcEEEEEEECCeEEeCCCCCCCCccccCCCEEEEEecCCC
Q 003021 797 NPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEG 850 (856)
Q Consensus 797 ~~sF~~L~~~a~~~g~ilIG~~~~~~~iiNP~~k~~~~~l~~gD~LIVi~~~e~ 850 (856)
+.|.++|.-. -.+|.-+|+++|++.+++||+ + ++.+.+||.||+-+++.+
T Consensus 133 gktLg~l~L~-t~tGvrVIAIRRG~~wi~~Pd-~--~~~Ir~gDvLIarG~~~g 182 (204)
T COG3273 133 GKTLGELDLA-TNTGVRVIAIRRGERWIYGPD-E--DTKIREGDVLIARGTDAG 182 (204)
T ss_pred ccchhhhccc-cccceEEEEEecCCccccCCC-c--cceeccCCEEEEecchhh
Confidence 3455555322 278999999999999999996 4 469999999999997665
No 57
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=89.89 E-value=0.45 Score=54.04 Aligned_cols=52 Identities=21% Similarity=0.377 Sum_probs=44.2
Q ss_pred CCCCCCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEecCCCC
Q 003021 477 FPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGK 531 (856)
Q Consensus 477 ~p~l~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa~~~~~ 531 (856)
....+|+..++++ .+ .+.+.++.|||+. ++|.+++++++||.+++++.+.+.
T Consensus 422 ~~~~ig~~lr~l~--~p~~~~~~~v~Rd~q~-i~p~g~t~l~~gD~l~v~~~~~d~ 474 (574)
T COG3263 422 DKWCVGAALRNLR--MPKWTRIAAVFRDGQL-IHPQGSTRLREGDVLCVIGSERDL 474 (574)
T ss_pred CCcccchhhhhcc--CCccceeeeEEecCce-eccCCCceeecCCEEEEEeccccH
Confidence 3467899998884 45 6888999999995 899999999999999999998654
No 58
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=89.83 E-value=1.3 Score=46.05 Aligned_cols=72 Identities=21% Similarity=0.247 Sum_probs=46.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...+++|+|.|+.+...++.|.+++. .|+|++....+++..+... ..+.+. ...++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-------------~V~VIs~~~~~~l~~l~~~-----~~i~~~------~~~~~ 64 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGA-------------HIVVISPELTENLVKLVEE-----GKIRWK------QKEFE 64 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-------------eEEEEcCCCCHHHHHHHhC-----CCEEEE------ecCCC
Confidence 46689999999999999999998754 5666655444455554431 122222 12455
Q ss_pred HcCccccCeEEEecCCC
Q 003021 373 RAAANKARAIIILPTKG 389 (856)
Q Consensus 373 rA~v~~A~aVIIl~~~~ 389 (856)
.+.+..|+. +|.++++
T Consensus 65 ~~~l~~adl-ViaaT~d 80 (202)
T PRK06718 65 PSDIVDAFL-VIAATND 80 (202)
T ss_pred hhhcCCceE-EEEcCCC
Confidence 566788994 5555543
No 59
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=89.18 E-value=1.8 Score=48.46 Aligned_cols=74 Identities=11% Similarity=0.195 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHhhhcccccccc--CC---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCeE
Q 003021 223 QSLEDCLWEAWACLISSSTHLKQ--RT---RVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHI 297 (856)
Q Consensus 223 ~s~~dalw~~~~~vt~st~g~gd--~T---~~gRl~~v~l~l~Gi~~fa~li~~it~~l~~~~~~lr~G~~~~v~~~~Hi 297 (856)
.||..||- |.+-|-+|.|||- .| +.+-+..++-.+.|.++=++++|.+.. |+.+-++.. .....++|-
T Consensus 111 ~sf~sAFL--FSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~a----KiarPkKRA-eTl~FS~~A 183 (400)
T KOG3827|consen 111 HSFTSAFL--FSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFA----KIARPKKRA-ETLIFSDHA 183 (400)
T ss_pred cchhhhhe--eeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCchhhh-heeeeccce
Confidence 46778887 5566666778875 44 456666666788888887777776655 443333222 235579999
Q ss_pred EEEcCC
Q 003021 298 IVCGVN 303 (856)
Q Consensus 298 II~G~~ 303 (856)
|||=-+
T Consensus 184 VI~~RD 189 (400)
T KOG3827|consen 184 VIALRD 189 (400)
T ss_pred EEEeeC
Confidence 988543
No 60
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.04 E-value=12 Score=42.80 Aligned_cols=181 Identities=14% Similarity=0.134 Sum_probs=105.0
Q ss_pred CeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHc
Q 003021 295 DHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERA 374 (856)
Q Consensus 295 ~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA 374 (856)
.-++|+|.|.+|..++..|.+.+. .+|.+ +++.++..+++...- + .+++...-+..+.+.|.++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d------------~~V~i-AdRs~~~~~~i~~~~--~-~~v~~~~vD~~d~~al~~l 65 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD------------GEVTI-ADRSKEKCARIAELI--G-GKVEALQVDAADVDALVAL 65 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC------------ceEEE-EeCCHHHHHHHHhhc--c-ccceeEEecccChHHHHHH
Confidence 358999999999999999988653 25665 788888888775531 1 1566777788888888888
Q ss_pred CccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCc----HHHHHhcCCCeEEehHHHHHHHHHH
Q 003021 375 AANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNT----CELLKSLSGLKVEPVENVASKLFVQ 450 (856)
Q Consensus 375 ~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~----~~~l~~~g~~~Vi~~~~i~~~lLaq 450 (856)
= .+.+.||.+.+.. .+.+.+.+++. ..++.+-...+++. .+..+.+|..-| -.
T Consensus 66 i-~~~d~VIn~~p~~----~~~~i~ka~i~-------~gv~yvDts~~~~~~~~~~~~a~~Agit~v-----------~~ 122 (389)
T COG1748 66 I-KDFDLVINAAPPF----VDLTILKACIK-------TGVDYVDTSYYEEPPWKLDEEAKKAGITAV-----------LG 122 (389)
T ss_pred H-hcCCEEEEeCCch----hhHHHHHHHHH-------hCCCEEEcccCCchhhhhhHHHHHcCeEEE-----------cc
Confidence 4 4449877776642 25666666555 35566544444433 233556664222 23
Q ss_pred HHccCCHHHHHHH-----Hhc-ccCcEEEEecCCC-----CCCCCHHHHHccCCc-eEEEEEEECCEEEECCCCCc
Q 003021 451 CSRQKGLIKIYRH-----LLN-YRKNIFNLWSFPN-----LAGIKYRQLRRGFQE-AVVCGLYRNGKIYFHPNDDE 514 (856)
Q Consensus 451 ~~~~Pgl~~v~~~-----Ll~-f~g~E~~v~~~p~-----l~G~tf~el~~~~~~-aivIGI~r~G~~~lnP~~d~ 514 (856)
+=..||+.+++.. +.+ .+...+|....|+ +...+-.....-+.. ...+=+|++|+..-.|+-+.
T Consensus 123 ~G~dPGi~nv~a~~a~~~~~~~i~si~iy~g~~g~~~~~~l~ya~tws~e~~l~e~~~p~~~~~~Gk~~~v~~~~~ 198 (389)
T COG1748 123 CGFDPGITNVLAAYAAKELFDEIESIDIYVGGLGEHGDNPLGYATTWSPEINLREYTRPARYWENGKWVEVDPLEE 198 (389)
T ss_pred cCcCcchHHHHHHHHHHHhhccccEEEEEEecCCCCCCCCccceeeecHHHhHHHhcCceEEEeCCEEEEecCccc
Confidence 4567888777632 221 1123445444442 222221111111111 24455678898776666543
No 61
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=86.22 E-value=3.9 Score=50.13 Aligned_cols=80 Identities=16% Similarity=0.460 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhc---------------CCCCCHHHHHHHHHHhhhccccccc-cCCcchhHHHHHHHHHH
Q 003021 198 VVLAVVCFSFVVFGGFLFFKFR---------------DETQSLEDCLWEAWACLISSSTHLK-QRTRVERVIGFILAIWG 261 (856)
Q Consensus 198 ~~l~~~~~~iv~~g~~l~~~~e---------------g~~~s~~dalw~~~~~vt~st~g~g-d~T~~gRl~~v~l~l~G 261 (856)
+.+++.|++++++..++|=|+. |...++..|+|.-|.++..-++-.. +.++.+|+.+.+-.+++
T Consensus 568 VmmFVm~livaai~vFlFEy~SPvgyn~~l~~gkkpggp~FtigkaiwllwaLvFnnsVpv~nPKgtTskiMv~VWAfFa 647 (1258)
T KOG1053|consen 568 VMMFVMCLIVAAITVFLFEYFSPVGYNRNLANGKKPGGPSFTIGKAIWLLWALVFNNSVPVENPKGTTSKIMVLVWAFFA 647 (1258)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCCCcceehhhHHHHHHHHHhCCCcCCCCCCchHHHHHHHHHHHHH
Confidence 3445555555555555654432 4567899999999999998888654 47788999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 003021 262 ILFYSRLLSTMTEQFR 277 (856)
Q Consensus 262 i~~fa~li~~it~~l~ 277 (856)
++++|..++-++..+.
T Consensus 648 vifLAsYTANLAAfMI 663 (1258)
T KOG1053|consen 648 VIFLASYTANLAAFMI 663 (1258)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999888775555443
No 62
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=83.79 E-value=6.8 Score=40.86 Aligned_cols=70 Identities=17% Similarity=0.188 Sum_probs=47.6
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER 373 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r 373 (856)
..+++|+|.|+++..-++.|...+. .|+|+++...++++.+.+. .++.++.+... .++|
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga-------------~VtVvsp~~~~~l~~l~~~-----~~i~~~~~~~~-~~dl-- 67 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGA-------------QLRVIAEELESELTLLAEQ-----GGITWLARCFD-ADIL-- 67 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC-------------EEEEEcCCCCHHHHHHHHc-----CCEEEEeCCCC-HHHh--
Confidence 4589999999999999999998754 5777777666667666542 14555666644 3443
Q ss_pred cCccccCeEEEecCC
Q 003021 374 AAANKARAIIILPTK 388 (856)
Q Consensus 374 A~v~~A~aVIIl~~~ 388 (856)
+.|+. ++++++
T Consensus 68 ---~~~~l-Vi~at~ 78 (205)
T TIGR01470 68 ---EGAFL-VIAATD 78 (205)
T ss_pred ---CCcEE-EEECCC
Confidence 56774 445553
No 63
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=83.01 E-value=0.11 Score=59.13 Aligned_cols=63 Identities=11% Similarity=0.232 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHhhhccccccccCC---cchh--------HHHHHHHHHHHHHHHHHHH
Q 003021 204 CFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQRT---RVER--------VIGFILAIWGILFYSRLLS 270 (856)
Q Consensus 204 ~~~iv~~g~~l~~~~eg~~~s~~dalw~~~~~vt~st~g~gd~T---~~gR--------l~~v~l~l~Gi~~fa~li~ 270 (856)
+++.+..|+.++...| +++|++|+| |.+++.+|.|+||.. ..++ .+..+.++.|+..++....
T Consensus 224 ~~~~~~~~~~~~~~~e--~w~f~~~~Y--f~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 297 (433)
T KOG1418|consen 224 SLVYLSPGSLLFSLQE--QWSFIEAFY--FSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVLL 297 (433)
T ss_pred eEEEecccceeeecee--ceeeEeeee--EEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHhh
Confidence 3344556666666665 499999999 888999999999943 3444 5677778888888776663
No 64
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=82.45 E-value=6.9 Score=40.81 Aligned_cols=56 Identities=7% Similarity=-0.024 Sum_probs=40.8
Q ss_pred CCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCC
Q 003021 594 KERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLN 660 (856)
Q Consensus 594 ~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td 660 (856)
.++++|+|+|+.+..-++.|.+ .|..|++++..+.++..+. .+ .-++.++.|+...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~---~ga~VtVvsp~~~~~l~~l-~~-------~~~i~~~~~~~~~ 64 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLK---AGAQLRVIAEELESELTLL-AE-------QGGITWLARCFDA 64 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHH---CCCEEEEEcCCCCHHHHHH-HH-------cCCEEEEeCCCCH
Confidence 4699999999999999999964 5778999998654443322 11 2256779998874
No 65
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=79.13 E-value=8.4 Score=43.95 Aligned_cols=89 Identities=15% Similarity=0.173 Sum_probs=56.4
Q ss_pred EEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHcCc
Q 003021 297 IIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAAA 376 (856)
Q Consensus 297 iII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA~v 376 (856)
|+|+|.|..|..+++.|.+.... ..|+ +++++.+.++.+.+.+ ..........+..+.+.|+++ +
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~-----------~~v~-va~r~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~l~~~-~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPF-----------EEVT-VADRNPEKAERLAEKL--LGDRVEAVQVDVNDPESLAEL-L 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE------------EEE-EEESSHHHHHHHHT----TTTTEEEEE--TTTHHHHHHH-H
T ss_pred CEEEcCcHHHHHHHHHHhcCCCC-----------CcEE-EEECCHHHHHHHHhhc--cccceeEEEEecCCHHHHHHH-H
Confidence 78999999999999999876431 1455 4799988888876532 112566677778888888888 8
Q ss_pred cccCeEEEecCCCCCCcchHHHHHHHHH
Q 003021 377 NKARAIIILPTKGDRYEVDTDAFLSVLA 404 (856)
Q Consensus 377 ~~A~aVIIl~~~~D~~~~Da~~l~~vLA 404 (856)
+.++.||-++... .....+..++.
T Consensus 66 ~~~dvVin~~gp~----~~~~v~~~~i~ 89 (386)
T PF03435_consen 66 RGCDVVINCAGPF----FGEPVARACIE 89 (386)
T ss_dssp TTSSEEEE-SSGG----GHHHHHHHHHH
T ss_pred hcCCEEEECCccc----hhHHHHHHHHH
Confidence 8889655454432 14455555554
No 66
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=77.24 E-value=7.9 Score=38.91 Aligned_cols=65 Identities=15% Similarity=0.300 Sum_probs=36.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCCh-hHHHHHHHhhccccCCceEEEecCCCHHHH
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR-KQMDKLAENIAKDLNHIDILSKSLTLTKSY 371 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~-~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L 371 (856)
.-.+++|+|||..|..+++.|...+. .|.| .|.|+ ..++...+ |+++. .+
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga-------------~V~V-~e~DPi~alqA~~d-------Gf~v~--------~~ 72 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGA-------------RVTV-TEIDPIRALQAAMD-------GFEVM--------TL 72 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT--------------EEEE-E-SSHHHHHHHHHT-------T-EEE---------H
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCC-------------EEEE-EECChHHHHHhhhc-------CcEec--------CH
Confidence 35579999999999999999988654 3443 67765 33333332 66654 23
Q ss_pred HHcCccccCeEEEecCC
Q 003021 372 ERAAANKARAIIILPTK 388 (856)
Q Consensus 372 ~rA~v~~A~aVIIl~~~ 388 (856)
+++ +..|+ +||.++.
T Consensus 73 ~~a-~~~ad-i~vtaTG 87 (162)
T PF00670_consen 73 EEA-LRDAD-IFVTATG 87 (162)
T ss_dssp HHH-TTT-S-EEEE-SS
T ss_pred HHH-HhhCC-EEEECCC
Confidence 333 56788 5555553
No 67
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=76.95 E-value=18 Score=38.36 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=47.6
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER 373 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r 373 (856)
..|++|+|.|+++..=++.|..++. .|.|+++.-.++++.+... ..+.++.+... +++|
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA-------------~VtVVap~i~~el~~l~~~-----~~i~~~~r~~~-~~dl-- 83 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGC-------------YVYILSKKFSKEFLDLKKY-----GNLKLIKGNYD-KEFI-- 83 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-------------EEEEEcCCCCHHHHHHHhC-----CCEEEEeCCCC-hHHh--
Confidence 4589999999999998999988754 6777787766667665442 24666655443 4444
Q ss_pred cCccccCeEEEecCC
Q 003021 374 AAANKARAIIILPTK 388 (856)
Q Consensus 374 A~v~~A~aVIIl~~~ 388 (856)
+.|. +|+++++
T Consensus 84 ---~g~~-LViaATd 94 (223)
T PRK05562 84 ---KDKH-LIVIATD 94 (223)
T ss_pred ---CCCc-EEEECCC
Confidence 5677 4555554
No 68
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=76.64 E-value=8.9 Score=38.23 Aligned_cols=69 Identities=20% Similarity=0.164 Sum_probs=51.6
Q ss_pred EEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHcC
Q 003021 297 IIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAA 375 (856)
Q Consensus 297 iII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA~ 375 (856)
|+|+|. |..|..++++|.+.++ .|+.++.+ ++..+. ..+++++.++..+.+.+.++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-------------~V~~~~R~-~~~~~~--------~~~~~~~~~d~~d~~~~~~a- 57 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-------------EVTALVRS-PSKAED--------SPGVEIIQGDLFDPDSVKAA- 57 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-------------EEEEEESS-GGGHHH--------CTTEEEEESCTTCHHHHHHH-
T ss_pred eEEECCCChHHHHHHHHHHHCCC-------------EEEEEecC-chhccc--------ccccccceeeehhhhhhhhh-
Confidence 689995 8999999999998765 56666544 444444 13889999998888877775
Q ss_pred ccccCeEEEecCC
Q 003021 376 ANKARAIIILPTK 388 (856)
Q Consensus 376 v~~A~aVIIl~~~ 388 (856)
+..+++|+.+...
T Consensus 58 l~~~d~vi~~~~~ 70 (183)
T PF13460_consen 58 LKGADAVIHAAGP 70 (183)
T ss_dssp HTTSSEEEECCHS
T ss_pred hhhcchhhhhhhh
Confidence 4589988876653
No 69
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=75.55 E-value=36 Score=31.38 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=47.3
Q ss_pred eEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHcC
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAA 375 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA~ 375 (856)
.+.|+|.|..+...+..+...... -.++-+.|.+++..+...+.+ +.. .+. +.+.|...
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~-----------~~v~~v~d~~~~~~~~~~~~~-----~~~-~~~---~~~~ll~~- 60 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPD-----------FEVVAVCDPDPERAEAFAEKY-----GIP-VYT---DLEELLAD- 60 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTT-----------EEEEEEECSSHHHHHHHHHHT-----TSE-EES---SHHHHHHH-
T ss_pred EEEEECCcHHHHHHHHHHHhcCCC-----------cEEEEEEeCCHHHHHHHHHHh-----ccc-chh---HHHHHHHh-
Confidence 478999999999999988876331 256656788888877766543 555 332 24444332
Q ss_pred ccccCeEEEecCC
Q 003021 376 ANKARAIIILPTK 388 (856)
Q Consensus 376 v~~A~aVIIl~~~ 388 (856)
.+.+.|+|.+++
T Consensus 61 -~~~D~V~I~tp~ 72 (120)
T PF01408_consen 61 -EDVDAVIIATPP 72 (120)
T ss_dssp -TTESEEEEESSG
T ss_pred -hcCCEEEEecCC
Confidence 278888877664
No 70
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=74.80 E-value=35 Score=37.93 Aligned_cols=120 Identities=14% Similarity=0.224 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
....++|+|.|..|..+++.|...+. ..|++ .+++++..+.+.+.+ +..++ +.+++.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~------------~~V~v-~~r~~~ra~~la~~~-----g~~~~-----~~~~~~ 233 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGV------------AEITI-ANRTYERAEELAKEL-----GGNAV-----PLDELL 233 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCC------------CEEEE-EeCCHHHHHHHHHHc-----CCeEE-----eHHHHH
Confidence 46789999999999999999976432 24544 577777666666543 22222 223454
Q ss_pred HcCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCcHH-HHHhcCCCeEEehHHHH
Q 003021 373 RAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCE-LLKSLSGLKVEPVENVA 444 (856)
Q Consensus 373 rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~~~-~l~~~g~~~Vi~~~~i~ 444 (856)
++ +..||.|| .++..+. . .+.+...+..+ . ....+++-+..|.+.+ ......+..++..+++-
T Consensus 234 ~~-l~~aDvVi-~at~~~~--~-~~~~~~~~~~~--~--~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl~ 297 (311)
T cd05213 234 EL-LNEADVVI-SATGAPH--Y-AKIVERAMKKR--S--GKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDLE 297 (311)
T ss_pred HH-HhcCCEEE-ECCCCCc--h-HHHHHHHHhhC--C--CCCeEEEEeCCCCCCchhhccCCCcEEEEHHHhH
Confidence 44 57789544 4454331 1 23333333321 1 2335777888887754 34444445677776543
No 71
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=74.77 E-value=5.7 Score=38.27 Aligned_cols=55 Identities=13% Similarity=0.373 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHhhhccccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003021 224 SLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRN 278 (856)
Q Consensus 224 s~~dalw~~~~~vt~st~g~gd~T~~gRl~~v~l~l~Gi~~fa~li~~it~~l~~ 278 (856)
++.+++|.+|..++..+....+.+..+|++.++..++.+++.+...+.++..+..
T Consensus 44 ~~~~~~~~~~~~~~~q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 98 (148)
T PF00060_consen 44 SLSNSFWYTFGTLLQQGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTV 98 (148)
T ss_dssp HHHHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3677777554444433333444667899999999999998888888877776664
No 72
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=74.68 E-value=9.4 Score=34.03 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=33.5
Q ss_pred EEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHh
Q 003021 297 IIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN 350 (856)
Q Consensus 297 iII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~ 350 (856)
|-|+|.|+.+..+++.|.+.+.. ...|.+..+++++..+++.++
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~----------~~~v~~~~~r~~~~~~~~~~~ 45 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIK----------PHEVIIVSSRSPEKAAELAKE 45 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-----------GGEEEEEEESSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHCCCC----------ceeEEeeccCcHHHHHHHHHh
Confidence 56889999999999999887520 125665558888888887765
No 73
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=74.54 E-value=7.1 Score=40.64 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=28.6
Q ss_pred CCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCC
Q 003021 594 KERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVP 630 (856)
Q Consensus 594 ~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p 630 (856)
.+++||+|+|+.+...++.|.+ .|..|++++...
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~---~ga~V~VIs~~~ 43 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLK---YGAHIVVISPEL 43 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---CCCeEEEEcCCC
Confidence 5799999999999999999964 467899998643
No 74
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=73.11 E-value=19 Score=37.53 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=50.3
Q ss_pred EEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCCh-hHHHHHHHhhccccCCceEEEecCCCHHHHHHc
Q 003021 297 IIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR-KQMDKLAENIAKDLNHIDILSKSLTLTKSYERA 374 (856)
Q Consensus 297 iII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~-~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA 374 (856)
|+|.|. |..|..+++.|...+. .|.++...+. +..+.+.. .|..++.++.++.+.|.++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-------------~V~~l~R~~~~~~~~~l~~------~g~~vv~~d~~~~~~l~~a 61 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-------------SVRALVRDPSSDRAQQLQA------LGAEVVEADYDDPESLVAA 61 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-------------CEEEEESSSHHHHHHHHHH------TTTEEEES-TT-HHHHHHH
T ss_pred CEEECCccHHHHHHHHHHHhCCC-------------CcEEEEeccchhhhhhhhc------ccceEeecccCCHHHHHHH
Confidence 567785 8999999999998554 4666655543 34444433 2888998888888888766
Q ss_pred CccccCeEEEecCC
Q 003021 375 AANKARAIIILPTK 388 (856)
Q Consensus 375 ~v~~A~aVIIl~~~ 388 (856)
.+.+++|+++.+.
T Consensus 62 -l~g~d~v~~~~~~ 74 (233)
T PF05368_consen 62 -LKGVDAVFSVTPP 74 (233)
T ss_dssp -HTTCSEEEEESSC
T ss_pred -HcCCceEEeecCc
Confidence 7899988776653
No 75
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=72.70 E-value=18 Score=35.93 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=42.9
Q ss_pred EEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 597 ILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 597 vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
|+|.|. |..|..++++|.+ .|.+|+.+...+ ++.+ . ...++++.||..|.+.+.++
T Consensus 1 I~V~GatG~vG~~l~~~L~~---~~~~V~~~~R~~--~~~~--------~--~~~~~~~~~d~~d~~~~~~a 57 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLR---RGHEVTALVRSP--SKAE--------D--SPGVEIIQGDLFDPDSVKAA 57 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHH---TTSEEEEEESSG--GGHH--------H--CTTEEEEESCTTCHHHHHHH
T ss_pred eEEECCCChHHHHHHHHHHH---CCCEEEEEecCc--hhcc--------c--ccccccceeeehhhhhhhhh
Confidence 689996 8899999999964 458899888743 2211 1 34566799999999999987
No 76
>COG2985 Predicted permease [General function prediction only]
Probab=72.34 E-value=3.4 Score=47.82 Aligned_cols=57 Identities=28% Similarity=0.415 Sum_probs=44.3
Q ss_pred cCCCCCCCCHHHHHccCCceEEE-EEEECCEEEECCCCCceecCCCEEEEEecCCCCCC
Q 003021 476 SFPNLAGIKYRQLRRGFQEAVVC-GLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKK 533 (856)
Q Consensus 476 ~~p~l~G~tf~el~~~~~~aivI-GI~r~G~~~lnP~~d~vI~~gD~LivIa~~~~~~~ 533 (856)
..|++.|+.++|+-....+.++| =+.|+|. ..+|++|++++.||.+-+++.+++..+
T Consensus 210 ~~p~~~g~~l~d~p~l~~~~v~~sRikrd~~-~~~p~~~~~i~~Gd~l~lVG~~~~l~r 267 (544)
T COG2985 210 VNPNLDGLNLRDLPILRQEGVYCSRIKRDGI-LAVPDPDTIIQVGDELHLVGYPDALAR 267 (544)
T ss_pred cCCCccccchhhcccccCCceEEEEEecCCe-eecCCCCcccccCcEEEecCChHHHHH
Confidence 46889999999987654443444 4555655 689999999999999999999876644
No 77
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=71.62 E-value=31 Score=44.58 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=67.8
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCccccccccccc-CcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATA-RKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~-~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...|+|+|.|..+...++-|....... ..|...+ +....|.++|.+.+..+.+.+.+ .+...+..+.++.+.|.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~-~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~----~~~~~v~lDv~D~e~L~ 643 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTIS-YYGDDSEEPTDVHVIVASLYLKDAKETVEGI----ENAEAVQLDVSDSESLL 643 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCcc-ccccccccccccEEEEECCCHHHHHHHHHhc----CCCceEEeecCCHHHHH
Confidence 568999999999999999997532100 0000000 01224556888877777766542 25555666667777777
Q ss_pred HcCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcC
Q 003021 373 RAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPN 424 (856)
Q Consensus 373 rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~ 424 (856)
++ ++.+++||++.+..- -..++..++. ..+|++.+-.+.+
T Consensus 644 ~~-v~~~DaVIsalP~~~----H~~VAkaAie-------aGkHvv~eky~~~ 683 (1042)
T PLN02819 644 KY-VSQVDVVISLLPASC----HAVVAKACIE-------LKKHLVTASYVSE 683 (1042)
T ss_pred Hh-hcCCCEEEECCCchh----hHHHHHHHHH-------cCCCEEECcCCHH
Confidence 65 456998888776421 2333333333 3567776543333
No 78
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=71.30 E-value=72 Score=32.50 Aligned_cols=79 Identities=11% Similarity=0.063 Sum_probs=49.7
Q ss_pred CCCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHH
Q 003021 293 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSY 371 (856)
Q Consensus 293 ~~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L 371 (856)
...+++|+|. |..+..+++.|...+. .++++ .++.+..+.+.+.+... .+..+...+..+.+++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-------------~V~l~-~R~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~ 91 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-------------RVVLV-GRDLERAQKAADSLRAR-FGEGVGAVETSDDAAR 91 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------------EEEEE-cCCHHHHHHHHHHHHhh-cCCcEEEeeCCCHHHH
Confidence 3568999996 9999999999987543 45554 66666666655543211 1445555566666666
Q ss_pred HHcCccccCeEEEecCC
Q 003021 372 ERAAANKARAIIILPTK 388 (856)
Q Consensus 372 ~rA~v~~A~aVIIl~~~ 388 (856)
.++ +..|+ +||.++.
T Consensus 92 ~~~-~~~~d-iVi~at~ 106 (194)
T cd01078 92 AAA-IKGAD-VVFAAGA 106 (194)
T ss_pred HHH-HhcCC-EEEECCC
Confidence 543 46788 4555554
No 79
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=68.71 E-value=26 Score=40.20 Aligned_cols=64 Identities=11% Similarity=0.013 Sum_probs=48.7
Q ss_pred CeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++||+|-|..+..++..|.+... .+|++.+..+ +.+..+.. ....++..+.=|+.|.+.|.++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d--~~V~iAdRs~--~~~~~i~~-----~~~~~v~~~~vD~~d~~al~~l 65 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD--GEVTIADRSK--EKCARIAE-----LIGGKVEALQVDAADVDALVAL 65 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC--ceEEEEeCCH--HHHHHHHh-----hccccceeEEecccChHHHHHH
Confidence 579999999999999999965432 7899988843 45555433 1122667789999999999998
No 80
>CHL00194 ycf39 Ycf39; Provisional
Probab=67.58 E-value=31 Score=37.98 Aligned_cols=59 Identities=17% Similarity=0.088 Sum_probs=42.5
Q ss_pred eEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 596 RILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 596 ~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+|+|.|. |..|..++++|.+ .|.+|+.+...+ ++... +....+.++.||.+|.+.|.++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~---~g~~V~~l~R~~--~~~~~--------l~~~~v~~v~~Dl~d~~~l~~a 61 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALD---EGYQVRCLVRNL--RKASF--------LKEWGAELVYGDLSLPETLPPS 61 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHH---CCCeEEEEEcCh--HHhhh--------HhhcCCEEEECCCCCHHHHHHH
Confidence 5899996 7899999999964 577888887632 11111 1122456799999999999886
No 81
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=65.96 E-value=20 Score=34.65 Aligned_cols=122 Identities=16% Similarity=0.313 Sum_probs=68.3
Q ss_pred cCCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHH
Q 003021 292 LESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSY 371 (856)
Q Consensus 292 ~~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L 371 (856)
....+++|+|.|..+..++..|...+. ..|.| ..++.+..+.+.+.+ .+..+-.... +++
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~------------~~i~i-~nRt~~ra~~l~~~~----~~~~~~~~~~---~~~ 69 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGA------------KEITI-VNRTPERAEALAEEF----GGVNIEAIPL---EDL 69 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTS------------SEEEE-EESSHHHHHHHHHHH----TGCSEEEEEG---GGH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCC------------CEEEE-EECCHHHHHHHHHHc----CccccceeeH---HHH
Confidence 458899999999999999999998755 35666 578888888887754 1222322222 233
Q ss_pred HHcCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCcHH-HHHhcCCCeEEehHHH
Q 003021 372 ERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCE-LLKSLSGLKVEPVENV 443 (856)
Q Consensus 372 ~rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~~~-~l~~~g~~~Vi~~~~i 443 (856)
. ....+|+ +||.++......-..+. +. ... ....++.-+.-|.+.+ .+....+..++..+++
T Consensus 70 ~-~~~~~~D-ivI~aT~~~~~~i~~~~----~~--~~~--~~~~~v~Dla~Pr~i~~~v~~~~~v~~~~~d~l 132 (135)
T PF01488_consen 70 E-EALQEAD-IVINATPSGMPIITEEM----LK--KAS--KKLRLVIDLAVPRDIDPEVAELPGVRLYDLDDL 132 (135)
T ss_dssp C-HHHHTES-EEEE-SSTTSTSSTHHH----HT--TTC--HHCSEEEES-SS-SB-TTCGGSTTECCEEHHHH
T ss_pred H-HHHhhCC-eEEEecCCCCcccCHHH----HH--HHH--hhhhceeccccCCCCChhhcccCCeEEEEhhhc
Confidence 3 2356788 55555543311111111 11 111 1124777776676654 3555455566666654
No 82
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=64.19 E-value=2.3e+02 Score=34.17 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=47.7
Q ss_pred ccCCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHH
Q 003021 291 VLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKS 370 (856)
Q Consensus 291 v~~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~ 370 (856)
...+..++|+|.|..|..+++++....+. .+|-++ |.+++.... ...|+.|+.... -.+.
T Consensus 113 ~~~~~r~lIiGAG~ag~~l~r~~~~~~~~-----------~pV~fi-Ddd~~~~g~-------~i~Gv~V~g~~~-i~~~ 172 (588)
T COG1086 113 KDNRIRLLIIGAGSAGDLLLRALRRDPEY-----------TPVAFL-DDDPDLTGM-------KIRGVPVLGRIE-IERV 172 (588)
T ss_pred ccCCCceEEEcCchHHHHHHHHHHhCCCc-----------ceEEEE-CCChhhcCC-------EEeceeeechhH-HHHH
Confidence 45578899999999999999999876442 244444 555432211 223666555444 4566
Q ss_pred HHHcCccccCeEEEecCCC
Q 003021 371 YERAAANKARAIIILPTKG 389 (856)
Q Consensus 371 L~rA~v~~A~aVIIl~~~~ 389 (856)
.++-+++ -++|+.++-
T Consensus 173 v~~~~~~---~iiiAips~ 188 (588)
T COG1086 173 VEELGIQ---LILIAIPSA 188 (588)
T ss_pred HHHcCCc---eEEEecCCC
Confidence 6666666 466666643
No 83
>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit; the pore-forming (alpha) subunits and smaller accessory (beta) subunits. The alpha subunit of the BK channel was initially thought to share the characteristic 6TM organisation of the voltage-gated K+ channels. However, the molecule is now thought to possess an additional TM domain, with an extracellular N terminus and intracellular C terminus. This C-terminal region contains 4 predominantly hydrophobic domains, which are also thought to lie intracellularly. The extracellular N terminus and the first TM region are required for modulation by the beta subunit. The precise location of the Ca2+-binding site that modulates channel activation remains unknown, but it is thought to lie within the C-terminal hydrophobic domains.; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 3NAF_A 3MT5_A 3U6N_E.
Probab=63.71 E-value=45 Score=30.71 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=52.8
Q ss_pred CcceeehhhHHHHHHHHHhhcccHHHHHHHHHcc-C-------------------CCeEEEEeccccccCCCCCCHHHHH
Q 003021 745 SLTYIAAEEIMSLVTAQVVENNELNEVWKDILNA-E-------------------GDEIYVKDISLYMKEGENPSFFELS 804 (856)
Q Consensus 745 ~~d~I~S~~iis~vlAq~a~n~~l~~v~~eLl~~-e-------------------G~Ei~v~~~~~~~~~g~~~sF~~L~ 804 (856)
++++|.-+++--.+||+...-|++.++.-.|+.. . ++|||-.+.+... .+.+|.++.
T Consensus 10 ~d~vIc~~elK~~lLA~sc~~PG~sTLi~NL~~s~~~~~~~~~~~~W~~eY~~G~~~eIy~~~l~~~f---~G~~F~~~~ 86 (101)
T PF03493_consen 10 ADQVICIEELKLGLLAQSCLCPGFSTLITNLFHSSSGDESQEEPEQWISEYLRGAGNEIYTVKLSSAF---VGMTFTEAA 86 (101)
T ss_dssp T-EEEEHHHHHHHHHHHHHHSTTHHHHHHHTTS-------SS--SSHHHHHHHHHTBEEEEEE--GGG---TTSBHHHHH
T ss_pred CceEEEHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCccccccccHHHHHHHHcCCCCEEEEEeCChhh---CCCcHHHHH
Confidence 3478888899999999999999999998877652 1 3568887776543 789999999
Q ss_pred HHHH-hcCcEEEEEE
Q 003021 805 ERAH-LRREVAIGYV 818 (856)
Q Consensus 805 ~~a~-~~g~ilIG~~ 818 (856)
.... +.|-++||++
T Consensus 87 ~~~~~~~~viLigIe 101 (101)
T PF03493_consen 87 RLLYEKFGVILIGIE 101 (101)
T ss_dssp HHHHHHS--EEEEEE
T ss_pred HHHHHHcCcEEEEeC
Confidence 8774 6899999984
No 84
>PRK05326 potassium/proton antiporter; Reviewed
Probab=63.22 E-value=9.1 Score=46.14 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=32.5
Q ss_pred HHHHHHhcCcEEEEEEECCeEEeCCCCCCCCccccCCCEEEEEecCCC
Q 003021 803 LSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEG 850 (856)
Q Consensus 803 L~~~a~~~g~ilIG~~~~~~~iiNP~~k~~~~~l~~gD~LIVi~~~e~ 850 (856)
+.+....++..+++++|+++. ++|.++ .++++||.++++++.+.
T Consensus 432 l~el~lp~~~~i~~v~R~g~~-~~p~~~---t~L~~GD~l~l~~~~~~ 475 (562)
T PRK05326 432 LRDLRLPRGALIALIIRDGKL-LVPTGS---TRLKAGDVLLVLGPERD 475 (562)
T ss_pred HHHcCCCCCcEEEEEEECCEE-eCCCCC---CeECCCCEEEEEECHHH
Confidence 434333468899999888775 688643 49999999999996654
No 85
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=63.03 E-value=55 Score=35.65 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=42.7
Q ss_pred eEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 596 RILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 596 ~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+++|.|. |-.|.++++.|.+ .|..|..++..+... . .+....++++.||.+|.+.|+++
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~---~g~~V~~~~r~~~~~--~--------~~~~~~~~~~~~D~~~~~~l~~~ 61 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLE---QGEEVRVLVRPTSDR--R--------NLEGLDVEIVEGDLRDPASLRKA 61 (328)
T ss_pred eEEEECCccchhHHHHHHHHH---CCCEEEEEEecCccc--c--------ccccCCceEEEeeCCCHHHHHHH
Confidence 5889987 6789999999964 467888887643211 1 12233567899999999988876
No 86
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=62.74 E-value=30 Score=33.66 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=38.1
Q ss_pred CeEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCC--hhHHHHHHHhhccccCCceEEEecCCCHHHH
Q 003021 295 DHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP--RKQMDKLAENIAKDLNHIDILSKSLTLTKSY 371 (856)
Q Consensus 295 ~HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~--~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L 371 (856)
.+++|.|.+. .|..++++|.+.+. ..|++..++ .+..+++.+++......+.++..|.++.+.+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~-------------~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~ 67 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA-------------RVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESI 67 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT-------------EEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc-------------eEEEEeeecccccccccccccccccccccccccccccccccc
Confidence 3789999664 89999999988633 244445555 5555555544432222445555555554433
Q ss_pred H
Q 003021 372 E 372 (856)
Q Consensus 372 ~ 372 (856)
+
T Consensus 68 ~ 68 (167)
T PF00106_consen 68 R 68 (167)
T ss_dssp H
T ss_pred c
Confidence 3
No 87
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=60.95 E-value=1.1e+02 Score=35.79 Aligned_cols=24 Identities=8% Similarity=0.183 Sum_probs=21.0
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcC
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYH 317 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~ 317 (856)
..+++|+|.|+.+..++++|.+.+
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~~ 151 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNP 151 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhCc
Confidence 567999999999999999997653
No 88
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=60.88 E-value=1.5e+02 Score=30.60 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=33.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
..+++|.|+|+.|..+++.|.+.+. .|+ +.|.+++.++.+.+
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~-------------~Vv-v~D~~~~~~~~~~~ 69 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGA-------------KLI-VADINEEAVARAAE 69 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-------------EEE-EEcCCHHHHHHHHH
Confidence 4579999999999999999988755 455 47888777776655
No 89
>PLN03223 Polycystin cation channel protein; Provisional
Probab=60.31 E-value=76 Score=41.58 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHhhhcccccc--cc-------CCcchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003021 221 ETQSLEDCLWEAWACLISSSTHL--KQ-------RTRVERVI-GFILAIWGILFYSRLLSTMTEQFRNNMQ 281 (856)
Q Consensus 221 ~~~s~~dalw~~~~~vt~st~g~--gd-------~T~~gRl~-~v~l~l~Gi~~fa~li~~it~~l~~~~~ 281 (856)
...|+..+++..|.+++. ...| .| ...+|-++ ..+++++.++++-+++++|.+.+.+...
T Consensus 1358 ~FSTf~sSL~TLFqMLLG-DfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEVK~ 1427 (1634)
T PLN03223 1358 HFSDMTDSINSLFENLLG-DITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEVKA 1427 (1634)
T ss_pred hhcCHHHHHHHHHHHHHc-CchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888866655432 1222 11 12456664 4445566667778999999998886433
No 90
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=59.85 E-value=21 Score=42.49 Aligned_cols=55 Identities=18% Similarity=0.448 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHhhhcccccccc-CCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003021 221 ETQSLEDCLWEAWACLISSSTHLKQ-RTRVERVIGFILAIWGILFYSRLLSTMTEQ 275 (856)
Q Consensus 221 ~~~s~~dalw~~~~~vt~st~g~gd-~T~~gRl~~v~l~l~Gi~~fa~li~~it~~ 275 (856)
...++..|.|++|-++..+|+|.|. .+...|+++++-.-+.+++.+..++-++..
T Consensus 610 ~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAF 665 (993)
T KOG4440|consen 610 DALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAF 665 (993)
T ss_pred hhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhh
Confidence 3468999999999999999887774 667889998887666666666555544443
No 91
>PRK06437 hypothetical protein; Provisional
Probab=59.25 E-value=22 Score=30.18 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=31.9
Q ss_pred CCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEe
Q 003021 481 AGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIA 526 (856)
Q Consensus 481 ~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa 526 (856)
.|.|..|+...+. ..--+++.+||++ .| .++.|++||++-++-
T Consensus 19 ~~~tv~dLL~~Lgi~~~~vaV~vNg~i--v~-~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 19 HELTVNDIIKDLGLDEEEYVVIVNGSP--VL-EDHNVKKEDDVLILE 62 (67)
T ss_pred CCCcHHHHHHHcCCCCccEEEEECCEE--CC-CceEcCCCCEEEEEe
Confidence 4689999876544 3344567789995 34 889999999998764
No 92
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=58.72 E-value=78 Score=34.40 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=29.6
Q ss_pred eEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
+|.|+|.|..|..+...|.+.++ +|+++ +++++..+.+.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-------------~V~~~-~r~~~~~~~~~~ 41 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-------------DVTLV-ARRGAHLDALNE 41 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-------------eEEEE-ECChHHHHHHHH
Confidence 58999999999999999987654 45554 555555665543
No 93
>PRK08267 short chain dehydrogenase; Provisional
Probab=57.57 E-value=21 Score=37.77 Aligned_cols=64 Identities=9% Similarity=-0.044 Sum_probs=44.9
Q ss_pred CeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+++||.|.+. .|..+++.|. ..|..|.+++..+ +..+.+.+ .+.+.+++++++|.++.+.++++
T Consensus 2 k~vlItGasg~iG~~la~~l~---~~G~~V~~~~r~~--~~~~~~~~----~~~~~~~~~~~~D~~~~~~v~~~ 66 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFA---AEGWRVGAYDINE--AGLAALAA----ELGAGNAWTGALDVTDRAAWDAA 66 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHH---HCCCeEEEEeCCH--HHHHHHHH----HhcCCceEEEEecCCCHHHHHHH
Confidence 4789999875 6889999995 3577888887532 22222221 12345688899999999998875
No 94
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=56.23 E-value=80 Score=35.62 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCc
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~ 318 (856)
.+-||+|+|.|..|..+++.|..++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGv 48 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGI 48 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 46789999999999999999998765
No 95
>PLN02214 cinnamoyl-CoA reductase
Probab=56.19 E-value=1.1e+02 Score=34.11 Aligned_cols=68 Identities=10% Similarity=0.049 Sum_probs=43.8
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++|+|.|. |-.|..+++.|.+ .|..|+.+...+.......+..+. .. ..++.++.||.++.+.+.++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~--~~-~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLE---RGYTVKGTVRNPDDPKNTHLRELE--GG-KERLILCKADLQDYEALKAA 78 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CcCEEEEEeCCchhhhHHHHHHhh--CC-CCcEEEEecCcCChHHHHHH
Confidence 467999998 6789999999963 577787776532211111111110 00 12467799999999998876
No 96
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=55.69 E-value=20 Score=37.43 Aligned_cols=60 Identities=18% Similarity=0.107 Sum_probs=42.0
Q ss_pred EEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 597 ILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 597 vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
|+|.|. |..|..+++.|.+ ++..|+.+-..+..++-..+.. .+. ..+.||..|.+.|.++
T Consensus 1 I~V~GatG~~G~~v~~~L~~---~~~~V~~l~R~~~~~~~~~l~~------~g~--~vv~~d~~~~~~l~~a 61 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS---AGFSVRALVRDPSSDRAQQLQA------LGA--EVVEADYDDPESLVAA 61 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH---TTGCEEEEESSSHHHHHHHHHH------TTT--EEEES-TT-HHHHHHH
T ss_pred CEEECCccHHHHHHHHHHHh---CCCCcEEEEeccchhhhhhhhc------ccc--eEeecccCCHHHHHHH
Confidence 678887 8899999999975 6778888887554444333221 233 4489999999999987
No 97
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=55.63 E-value=50 Score=31.99 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHh
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN 350 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~ 350 (856)
...+++|+|.|..+..+++.|...+. ..+++ .+++++..+.+.+.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~------------~~v~v-~~r~~~~~~~~~~~ 62 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGA------------AKIVI-VNRTLEKAKALAER 62 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC------------CEEEE-EcCCHHHHHHHHHH
Confidence 35789999999999999999987531 13444 57777777766554
No 98
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=55.18 E-value=48 Score=36.12 Aligned_cols=68 Identities=16% Similarity=0.299 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCc--eEEEecCCCHH
Q 003021 293 ESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHI--DILSKSLTLTK 369 (856)
Q Consensus 293 ~~~HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~--~Vi~~~~~~~e 369 (856)
...+++|.|.+. .|..++++|.+.++ +++ |..++++.++++.+++.... ++ +++..|-++++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~-------------~li-LvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~ 69 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGY-------------NLI-LVARREDKLEALAKELEDKT-GVEVEVIPADLSDPE 69 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-------------EEE-EEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChh
Confidence 467899999886 89999999998755 444 56788888998887654332 33 44555655666
Q ss_pred HHHHcC
Q 003021 370 SYERAA 375 (856)
Q Consensus 370 ~L~rA~ 375 (856)
++++.-
T Consensus 70 ~~~~l~ 75 (265)
T COG0300 70 ALERLE 75 (265)
T ss_pred HHHHHH
Confidence 555543
No 99
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=54.74 E-value=76 Score=33.45 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCCh
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR 341 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~ 341 (856)
..-+++|.|+|++|..+++.|.+.+. .+|.++|.+.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G~-------------~vV~vsD~~g 57 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEGG-------------KVLAVSDPDG 57 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-------------EEEEEEcCCC
Confidence 46699999999999999999988643 4666788765
No 100
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=54.63 E-value=62 Score=39.98 Aligned_cols=82 Identities=13% Similarity=0.174 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhc---------------CCCCCHHHHHHHHHHhhhcccccccc-----CC---cchhH-
Q 003021 197 LVVLAVVCFSFVVFGGFLFFKFR---------------DETQSLEDCLWEAWACLISSSTHLKQ-----RT---RVERV- 252 (856)
Q Consensus 197 ~~~l~~~~~~iv~~g~~l~~~~e---------------g~~~s~~dalw~~~~~vt~st~g~gd-----~T---~~gRl- 252 (856)
++|+++-+++++-++..+|..+. +...+..|+|.+....++-.|.|++| .+ ..+++
T Consensus 544 ~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kil 623 (782)
T KOG3676|consen 544 FRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKIL 623 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHH
Confidence 56666666444444433333322 13346778877767777777888887 23 34554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003021 253 IGFILAIWGILFYSRLLSTMTEQFRN 278 (856)
Q Consensus 253 ~~v~l~l~Gi~~fa~li~~it~~l~~ 278 (856)
|.+.++++-|+++-.||+.|.+-..+
T Consensus 624 fv~y~ilv~ILllNMLIAMMg~Ty~~ 649 (782)
T KOG3676|consen 624 FVAYMILVTILLLNMLIAMMGNTYET 649 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 55667888888888999988765554
No 101
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=54.53 E-value=1.6e+02 Score=34.38 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=20.7
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcC
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYH 317 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~ 317 (856)
...++|+|.|+.+..++++|.+..
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~ 148 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNP 148 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCc
Confidence 456999999999999999998643
No 102
>CHL00194 ycf39 Ycf39; Provisional
Probab=53.79 E-value=50 Score=36.39 Aligned_cols=71 Identities=18% Similarity=0.147 Sum_probs=48.1
Q ss_pred eEEEEc-CCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHc
Q 003021 296 HIIVCG-VNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERA 374 (856)
Q Consensus 296 HiII~G-~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA 374 (856)
+|+|+| .|-.|..++++|.+.++ .|+++. ++.+....+.. .+.+++.++..++++|.++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-------------~V~~l~-R~~~~~~~l~~------~~v~~v~~Dl~d~~~l~~a 61 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-------------QVRCLV-RNLRKASFLKE------WGAELVYGDLSLPETLPPS 61 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-------------eEEEEE-cChHHhhhHhh------cCCEEEECCCCCHHHHHHH
Confidence 478888 57899999999998765 455554 33322222211 2678888888888888765
Q ss_pred CccccCeEEEecC
Q 003021 375 AANKARAIIILPT 387 (856)
Q Consensus 375 ~v~~A~aVIIl~~ 387 (856)
++.+++|+-++.
T Consensus 62 -l~g~d~Vi~~~~ 73 (317)
T CHL00194 62 -FKGVTAIIDAST 73 (317)
T ss_pred -HCCCCEEEECCC
Confidence 567887776543
No 103
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=53.00 E-value=1.3e+02 Score=34.90 Aligned_cols=119 Identities=14% Similarity=0.253 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...+++|+|.|+.+..+++.|...+. ..|.| +.+..+..+++.+++ +..++ ..+.|.
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~------------~~i~I-aNRT~erA~~La~~~-----~~~~~-----~l~el~ 233 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV------------KKITI-ANRTLERAEELAKKL-----GAEAV-----ALEELL 233 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC------------CEEEE-EcCCHHHHHHHHHHh-----CCeee-----cHHHHH
Confidence 36689999999999999999998765 25665 688888888887754 22222 223333
Q ss_pred HcCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCcHHH-HHhcCCCeEEehHH
Q 003021 373 RAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCEL-LKSLSGLKVEPVEN 442 (856)
Q Consensus 373 rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~~~~-l~~~g~~~Vi~~~~ 442 (856)
. ....||. ||.++.....--....+..++..|. . -+++=+..|.+.+- .....+..++..++
T Consensus 234 ~-~l~~~Dv-VissTsa~~~ii~~~~ve~a~~~r~-----~-~livDiavPRdie~~v~~l~~v~l~~iDD 296 (414)
T COG0373 234 E-ALAEADV-VISSTSAPHPIITREMVERALKIRK-----R-LLIVDIAVPRDVEPEVGELPNVFLYTIDD 296 (414)
T ss_pred H-hhhhCCE-EEEecCCCccccCHHHHHHHHhccc-----C-eEEEEecCCCCCCccccCcCCeEEEehhh
Confidence 2 3678884 5555543211122233333333111 1 35556666665442 32223335555543
No 104
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=52.54 E-value=30 Score=29.54 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=32.1
Q ss_pred CCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEe
Q 003021 481 AGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIA 526 (856)
Q Consensus 481 ~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa 526 (856)
.|.|..|+...+. ..-.+++..||++. +.++.|++||++-++-
T Consensus 22 ~~~tv~~ll~~l~~~~~~v~v~vNg~iv---~~~~~l~~gD~Veii~ 65 (70)
T PRK08364 22 KGMKVADILRAVGFNTESAIAKVNGKVA---LEDDPVKDGDYVEVIP 65 (70)
T ss_pred CCCcHHHHHHHcCCCCccEEEEECCEEC---CCCcCcCCCCEEEEEc
Confidence 3689999877654 33447777899964 4689999999998764
No 105
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=52.52 E-value=68 Score=35.59 Aligned_cols=106 Identities=14% Similarity=0.059 Sum_probs=64.2
Q ss_pred eEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhcccccccc
Q 003021 596 RILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNS 674 (856)
Q Consensus 596 ~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a~i~i~~a 674 (856)
.||+.|+ |-.+...+.+|. ..|.+++|+++...--++. +....+.|+.||-.|++.|.+.--+
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll---~~G~~vvV~DNL~~g~~~~---------v~~~~~~f~~gDi~D~~~L~~vf~~---- 65 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLL---KTGHEVVVLDNLSNGHKIA---------LLKLQFKFYEGDLLDRALLTAVFEE---- 65 (329)
T ss_pred eEEEecCcchhHHHHHHHHH---HCCCeEEEEecCCCCCHHH---------hhhccCceEEeccccHHHHHHHHHh----
Confidence 5777775 568889999995 4789999999864333321 2222257899999999999886222
Q ss_pred ccCCCCCCcEEEEEeCCCccCCCC---ChhhHHHHHHHHHHHHHhhhhCCC
Q 003021 675 FKDGEELPLSIVVISDREWLLGDP---SRADKQSAYSLLLAENICNKLGVK 722 (856)
Q Consensus 675 ~~~d~~~~~siIILsd~d~~~~~~---~~aDa~~l~t~L~~r~l~~~~g~~ 722 (856)
.+ |.+||=.+.....+++- .+==..|+...|.+=+.+.+.|++
T Consensus 66 ~~-----idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~ 111 (329)
T COG1087 66 NK-----IDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVK 111 (329)
T ss_pred cC-----CCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCC
Confidence 11 22666666433222222 222235565555555555566654
No 106
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=52.15 E-value=1.1e+02 Score=32.37 Aligned_cols=63 Identities=10% Similarity=0.073 Sum_probs=40.8
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCC-HHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLN-FETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td-~~~L~~a 667 (856)
..+++|+|. |..|..++++|.+ .|..|+.+...+ ++...+. ..+..+.++.||.++ .+.|.++
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~---~g~~V~~~~R~~--~~~~~~~------~~~~~~~~~~~Dl~d~~~~l~~~ 81 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLA---KGFAVKAGVRDV--DKAKTSL------PQDPSLQIVRADVTEGSDKLVEA 81 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHh---CCCEEEEEecCH--HHHHHhc------ccCCceEEEEeeCCCCHHHHHHH
Confidence 478999996 7789999999954 466777666532 2211110 012346779999998 4556554
No 107
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=51.41 E-value=85 Score=33.30 Aligned_cols=60 Identities=18% Similarity=0.045 Sum_probs=39.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHH
Q 003021 593 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETL 664 (856)
Q Consensus 593 ~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L 664 (856)
...+|||+|+|+.+..=++.|.+ .|..|++++....++.... ...-++.++..+.. .+.|
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~---~gA~VtVVap~i~~el~~l--------~~~~~i~~~~r~~~-~~dl 83 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLK---KGCYVYILSKKFSKEFLDL--------KKYGNLKLIKGNYD-KEFI 83 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---CCCEEEEEcCCCCHHHHHH--------HhCCCEEEEeCCCC-hHHh
Confidence 45799999999999887777754 5778999998644443322 11234566776654 3344
No 108
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=50.09 E-value=28 Score=35.11 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=38.6
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER 373 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r 373 (856)
...|.|+|||.+|..-...|...+. +|+|-...+....+...+. |..+. +..+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~-------------~V~Vglr~~s~s~~~A~~~------Gf~v~--------~~~e 56 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGV-------------NVIVGLREGSASWEKAKAD------GFEVM--------SVAE 56 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC--------------EEEEEE-TTCHHHHHHHHT------T-ECC--------EHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCC-------------CEEEEecCCCcCHHHHHHC------CCeec--------cHHH
Confidence 4568999999999999999987544 4554323333355554432 55543 3344
Q ss_pred cCccccCeEEEecCC
Q 003021 374 AAANKARAIIILPTK 388 (856)
Q Consensus 374 A~v~~A~aVIIl~~~ 388 (856)
| +++||.|++|.+|
T Consensus 57 A-v~~aDvV~~L~PD 70 (165)
T PF07991_consen 57 A-VKKADVVMLLLPD 70 (165)
T ss_dssp H-HHC-SEEEE-S-H
T ss_pred H-HhhCCEEEEeCCh
Confidence 4 7889988887763
No 109
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=48.65 E-value=34 Score=39.02 Aligned_cols=64 Identities=14% Similarity=-0.015 Sum_probs=42.1
Q ss_pred EEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 597 ILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 597 vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
|+|+|.|..+..+++.|.+... ..++++.+. ..++.+.+.+ .+...++.++.-|..|.+.|++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~-~~~v~va~r--~~~~~~~~~~----~~~~~~~~~~~~d~~~~~~l~~~ 64 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP-FEEVTVADR--NPEKAERLAE----KLLGDRVEAVQVDVNDPESLAEL 64 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC-E-EEEEEES--SHHHHHHHHT------TTTTEEEEE--TTTHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCC-CCcEEEEEC--CHHHHHHHHh----hccccceeEEEEecCCHHHHHHH
Confidence 7899999999999999976422 227888776 3344333332 22456778899999999999887
No 110
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=47.82 E-value=73 Score=30.69 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=48.9
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER 373 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r 373 (856)
+=.|-|+|.|+.+..|.+-|...++ .|+-+..++.+..+.+...+ .... ..++..
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~-------------~v~~v~srs~~sa~~a~~~~----~~~~--------~~~~~~ 64 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGH-------------EVVGVYSRSPASAERAAAFI----GAGA--------ILDLEE 64 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTS-------------EEEEESSCHH-HHHHHHC------TT-------------TTG
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCC-------------eEEEEEeCCccccccccccc----cccc--------cccccc
Confidence 5578999999999999999988765 45555555554444443211 1111 112222
Q ss_pred cCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCcHH
Q 003021 374 AAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCE 427 (856)
Q Consensus 374 A~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~~~ 427 (856)
-+++||.++|..+| | ....+...|+-.... ....+|+..+=.-..+
T Consensus 65 -~~~~aDlv~iavpD-d----aI~~va~~La~~~~~--~~g~iVvHtSGa~~~~ 110 (127)
T PF10727_consen 65 -ILRDADLVFIAVPD-D----AIAEVAEQLAQYGAW--RPGQIVVHTSGALGSD 110 (127)
T ss_dssp -GGCC-SEEEE-S-C-C----HHHHHHHHHHCC--S---TT-EEEES-SS--GG
T ss_pred -ccccCCEEEEEech-H----HHHHHHHHHHHhccC--CCCcEEEECCCCChHH
Confidence 25789966655543 3 344444555533211 2345776555443333
No 111
>PRK06949 short chain dehydrogenase; Provisional
Probab=47.12 E-value=98 Score=32.42 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=40.5
Q ss_pred cCCCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHH
Q 003021 292 LESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKS 370 (856)
Q Consensus 292 ~~~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~ 370 (856)
....+++|.|. |..|..++++|...+. .|++ ..++++.++.+...+........++..+.++.++
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-------------~Vi~-~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~ 72 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-------------KVVL-ASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQS 72 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHH
Confidence 34578899996 5699999999987644 4444 4666666655544321111134455556555554
Q ss_pred HHH
Q 003021 371 YER 373 (856)
Q Consensus 371 L~r 373 (856)
+++
T Consensus 73 ~~~ 75 (258)
T PRK06949 73 IKA 75 (258)
T ss_pred HHH
Confidence 444
No 112
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=46.16 E-value=32 Score=31.56 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=28.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCC
Q 003021 593 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDV 629 (856)
Q Consensus 593 ~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~ 629 (856)
..+++||+|+|+.+..-++.|. ..|..|++++..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll---~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLL---EAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHC---CCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHH---hCCCEEEEECCc
Confidence 3589999999999999999994 567899999975
No 113
>PRK07806 short chain dehydrogenase; Provisional
Probab=45.83 E-value=46 Score=34.72 Aligned_cols=68 Identities=10% Similarity=0.018 Sum_probs=43.1
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|. |..+..++++|. ..|..|.++...+.+..+....++. -.+.++.++.+|.++.+.++++
T Consensus 6 ~k~vlItGasggiG~~l~~~l~---~~G~~V~~~~r~~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~ 74 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILA---GAGAHVVVNYRQKAPRANKVVAEIE---AAGGRASAVGADLTDEESVAAL 74 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHH---HCCCEEEEEeCCchHhHHHHHHHHH---hcCCceEEEEcCCCCHHHHHHH
Confidence 368999998 468999999996 3577777766532211111111110 0123567899999999988764
No 114
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=45.56 E-value=1e+02 Score=31.98 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCc
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~ 318 (856)
.+-+|+|+|.|..|..+++.|...+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv 45 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV 45 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC
Confidence 47789999999999999999998765
No 115
>PRK06924 short chain dehydrogenase; Provisional
Probab=45.50 E-value=50 Score=34.52 Aligned_cols=64 Identities=8% Similarity=0.011 Sum_probs=43.4
Q ss_pred CeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
++++|.|.+ ..|..++++|.+ .|..|.++...+.+. .+.+.+ ..+.+++++.+|.++.+.+++.
T Consensus 2 k~vlItGasggiG~~ia~~l~~---~g~~V~~~~r~~~~~-~~~~~~-----~~~~~~~~~~~D~~~~~~~~~~ 66 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLE---KGTHVISISRTENKE-LTKLAE-----QYNSNLTFHSLDLQDVHELETN 66 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHh---cCCEEEEEeCCchHH-HHHHHh-----ccCCceEEEEecCCCHHHHHHH
Confidence 478999974 579999999964 577788887643222 111111 1134577899999999988765
No 116
>PRK12939 short chain dehydrogenase; Provisional
Probab=44.63 E-value=1.2e+02 Score=31.54 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=46.3
Q ss_pred CCCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHH
Q 003021 293 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSY 371 (856)
Q Consensus 293 ~~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L 371 (856)
...+++|.|. |..|..++++|.+.+. .++++ +++++..+.....+........++..+..+.+.+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 71 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA-------------TVAFN-DGLAAEARELAAALEAAGGRAHAIAADLADPASV 71 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHH
Confidence 3578899996 5699999999987654 45554 5555555554433211111345566666666555
Q ss_pred HHcCc------cccCeEEEec
Q 003021 372 ERAAA------NKARAIIILP 386 (856)
Q Consensus 372 ~rA~v------~~A~aVIIl~ 386 (856)
+++-- ...+.+|-.+
T Consensus 72 ~~~~~~~~~~~~~id~vi~~a 92 (250)
T PRK12939 72 QRFFDAAAAALGGLDGLVNNA 92 (250)
T ss_pred HHHHHHHHHHcCCCCEEEECC
Confidence 44321 3466555443
No 117
>PLN00203 glutamyl-tRNA reductase
Probab=44.55 E-value=2.1e+02 Score=34.38 Aligned_cols=125 Identities=14% Similarity=0.208 Sum_probs=66.5
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER 373 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r 373 (856)
...++|+|.|..+..+++.|...+. ..|+| .+++.+..+.+...+ .+..+... ..+++..
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~------------~~V~V-~nRs~era~~La~~~----~g~~i~~~---~~~dl~~ 325 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC------------TKMVV-VNRSEERVAALREEF----PDVEIIYK---PLDEMLA 325 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC------------CeEEE-EeCCHHHHHHHHHHh----CCCceEee---cHhhHHH
Confidence 5679999999999999999986543 24555 577777777776543 12222221 2234433
Q ss_pred cCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCcHH-HHHhcCCCeEEehHH
Q 003021 374 AAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCE-LLKSLSGLKVEPVEN 442 (856)
Q Consensus 374 A~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~~~-~l~~~g~~~Vi~~~~ 442 (856)
.+..||. ||.++.....--+.+.+..+...+... ..-.+++=+.-|.+.+ ......+..++..++
T Consensus 326 -al~~aDV-VIsAT~s~~pvI~~e~l~~~~~~~~~~--~~~~~~IDLAvPRdIdp~v~~l~~v~lydiDd 391 (519)
T PLN00203 326 -CAAEADV-VFTSTSSETPLFLKEHVEALPPASDTV--GGKRLFVDISVPRNVGACVSELESARVYNVDD 391 (519)
T ss_pred -HHhcCCE-EEEccCCCCCeeCHHHHHHhhhccccc--CCCeEEEEeCCCCCCccccccCCCCeEEEecc
Confidence 3578995 445554321122334443333322211 1113455666666554 233333345666643
No 118
>PRK12829 short chain dehydrogenase; Provisional
Probab=44.39 E-value=47 Score=34.97 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=44.0
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+ ..+..+++.|.+ .|..|.++...+ +..+.+.+ ...+.++..+.+|.++.+.++++
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~---~g~~V~~~~r~~--~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~ 76 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAE---AGARVHVCDVSE--AALAATAA----RLPGAKVTATVADVADPAQVERV 76 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH----HHhcCceEEEEccCCCHHHHHHH
Confidence 4789999986 468899999964 577788887632 22222211 12223567799999999988764
No 119
>PRK09291 short chain dehydrogenase; Provisional
Probab=44.34 E-value=1.6e+02 Score=30.84 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=47.5
Q ss_pred CeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH
Q 003021 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER 373 (856)
Q Consensus 295 ~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r 373 (856)
.+++|.|.+ ..|..++++|.+.+. .++++ .++.+..+.+.+.......++.++..+-++.+.+++
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 68 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH-------------NVIAG-VQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQ 68 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHH
Confidence 478999975 589999999987654 45544 444444444333211111235666677777778877
Q ss_pred cCccccCeEEEec
Q 003021 374 AAANKARAIIILP 386 (856)
Q Consensus 374 A~v~~A~aVIIl~ 386 (856)
+--...+.+|-.+
T Consensus 69 ~~~~~id~vi~~a 81 (257)
T PRK09291 69 AAEWDVDVLLNNA 81 (257)
T ss_pred HhcCCCCEEEECC
Confidence 7444678655443
No 120
>PRK10637 cysG siroheme synthase; Provisional
Probab=44.29 E-value=1.2e+02 Score=35.62 Aligned_cols=71 Identities=10% Similarity=0.075 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...+++|+|.|+++..=++.|..++. .|+|+++.-.++++.+... ..++.+.+... .++|
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~ga-------------~v~visp~~~~~~~~l~~~-----~~i~~~~~~~~-~~dl- 70 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAGA-------------RLTVNALAFIPQFTAWADA-----GMLTLVEGPFD-ESLL- 70 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-------------EEEEEcCCCCHHHHHHHhC-----CCEEEEeCCCC-hHHh-
Confidence 46789999999999998999988754 5777777655566665442 24555555543 3444
Q ss_pred HcCccccCeEEEecCC
Q 003021 373 RAAANKARAIIILPTK 388 (856)
Q Consensus 373 rA~v~~A~aVIIl~~~ 388 (856)
+.|. +++++++
T Consensus 71 ----~~~~-lv~~at~ 81 (457)
T PRK10637 71 ----DTCW-LAIAATD 81 (457)
T ss_pred ----CCCE-EEEECCC
Confidence 5676 4445554
No 121
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=44.19 E-value=1.1e+02 Score=33.45 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=46.2
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCCh---hHHHHHHHhhccccCCceEEEecCCCHHH
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR---KQMDKLAENIAKDLNHIDILSKSLTLTKS 370 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~---~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~ 370 (856)
..+++|+|.|-.+..++..|...+. ..|+|+ +++. +..+++.+.+.....+..+...+.++.+.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~------------~~V~I~-~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~ 192 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGA------------KEITIF-NIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEK 192 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC------------CEEEEE-eCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhH
Confidence 4689999999999999999987654 246664 5543 45555554432221122333334334444
Q ss_pred HHHcCccccCeEEEecCC
Q 003021 371 YERAAANKARAIIILPTK 388 (856)
Q Consensus 371 L~rA~v~~A~aVIIl~~~ 388 (856)
+.. .++.++ +||-++.
T Consensus 193 ~~~-~~~~~D-ilINaTp 208 (289)
T PRK12548 193 LKA-EIASSD-ILVNATL 208 (289)
T ss_pred HHh-hhccCC-EEEEeCC
Confidence 433 356678 4555553
No 122
>PRK07326 short chain dehydrogenase; Provisional
Probab=44.01 E-value=48 Score=34.28 Aligned_cols=65 Identities=12% Similarity=0.072 Sum_probs=43.9
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcc-CceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLK-NVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~-~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|. |..|..+++.|.+ .|..|.++...+ ++...+.+ .+. ..+++++.+|.++.+.++++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~---~g~~V~~~~r~~--~~~~~~~~----~l~~~~~~~~~~~D~~~~~~~~~~ 72 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLA---EGYKVAITARDQ--KELEEAAA----ELNNKGNVLGLAADVRDEADVQRA 72 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH---CCCEEEEeeCCH--HHHHHHHH----HHhccCcEEEEEccCCCHHHHHHH
Confidence 478899987 5689999999963 477788887533 22222211 111 14577899999999988765
No 123
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=43.95 E-value=58 Score=36.89 Aligned_cols=64 Identities=14% Similarity=0.278 Sum_probs=42.8
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCCh-hHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR-KQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~-~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
-.-+||||||..|.-+...+...+. .| ++.|.|+ .++|...+ |++|+.-+
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg~GA-------------~V-iVtEvDPI~AleA~Md-------Gf~V~~m~-------- 259 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRGMGA-------------RV-IVTEVDPIRALEAAMD-------GFRVMTME-------- 259 (420)
T ss_pred CceEEEecccccchHHHHHhhcCCC-------------eE-EEEecCchHHHHHhhc-------CcEEEEhH--------
Confidence 3457899999999999999977544 33 4467544 56666544 88888632
Q ss_pred HcCccccCeEEEecCC
Q 003021 373 RAAANKARAIIILPTK 388 (856)
Q Consensus 373 rA~v~~A~aVIIl~~~ 388 (856)
+ .++.|+ ++|.++.
T Consensus 260 ~-Aa~~gD-ifiT~TG 273 (420)
T COG0499 260 E-AAKTGD-IFVTATG 273 (420)
T ss_pred H-hhhcCC-EEEEccC
Confidence 2 256778 5665553
No 124
>PRK07024 short chain dehydrogenase; Provisional
Probab=43.83 E-value=61 Score=34.25 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=43.6
Q ss_pred CeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
++++|.|.+ ..|..++++|.+ .|..|.+++..+ ++.+.+.+. ..... +++++.+|.++.+.++++
T Consensus 3 ~~vlItGas~gIG~~la~~l~~---~G~~v~~~~r~~--~~~~~~~~~--~~~~~-~~~~~~~Dl~~~~~i~~~ 68 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYAR---QGATLGLVARRT--DALQAFAAR--LPKAA-RVSVYAADVRDADALAAA 68 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHh--cccCC-eeEEEEcCCCCHHHHHHH
Confidence 578999865 478999999964 577888887632 222222210 01112 678899999999988775
No 125
>PRK07454 short chain dehydrogenase; Provisional
Probab=43.78 E-value=45 Score=34.69 Aligned_cols=67 Identities=12% Similarity=0.022 Sum_probs=43.8
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|. |..+..++++|.+ .|..|.+++..+. +..+...+. .-.+.++.++.+|.++.+.+.++
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~---~G~~V~~~~r~~~-~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 73 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAK---AGWDLALVARSQD-ALEALAAEL---RSTGVKAAAYSIDLSNPEAIAPG 73 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCCHH-HHHHHHHHH---HhCCCcEEEEEccCCCHHHHHHH
Confidence 367899998 4578999999964 5777888876322 111111111 01124577899999999988765
No 126
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=43.52 E-value=1.6e+02 Score=32.93 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=62.9
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCC--CCccCceEEEEECCCCCHHHHHhcccc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGH--GKLKNVQVFHKIGNPLNFETLKDTIMN 670 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~--~~l~~~~V~~i~GD~td~~~L~~a~i~ 670 (856)
.++|+|.|. |-.|..++++|.+ .|.+|+.++..+.. ....+.+... ......++.++.||-+|.+.|.++- .
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~---~g~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~-~ 89 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLF---LNQTVIGLDNFSTG-YQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKAC-K 89 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHH---CCCEEEEEeCCCCc-chhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh-h
Confidence 468999998 7799999999964 46778888753211 1111111000 0011134788999999998887652 1
Q ss_pred ccccccCCCCCCcEEEEEeCCCc---cCCCCChhhHHHHHHHHHHHHHhhhhCCC
Q 003021 671 IQNSFKDGEELPLSIVVISDREW---LLGDPSRADKQSAYSLLLAENICNKLGVK 722 (856)
Q Consensus 671 i~~a~~~d~~~~~siIILsd~d~---~~~~~~~aDa~~l~t~L~~r~l~~~~g~~ 722 (856)
..| .||=++-... ...++......|+...+.+=+.+.+.+.+
T Consensus 90 -----~~d-----~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~ 134 (348)
T PRK15181 90 -----NVD-----YVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS 134 (348)
T ss_pred -----CCC-----EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 123 4555653210 01233333445555555444555566654
No 127
>PRK01581 speE spermidine synthase; Validated
Probab=43.19 E-value=1.7e+02 Score=33.60 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=39.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhc------ccCCCCccCceEEEEECCCCCHHHHHh
Q 003021 593 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASN------AIGHGKLKNVQVFHKIGNPLNFETLKD 666 (856)
Q Consensus 593 ~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~------~~~~~~l~~~~V~~i~GD~td~~~L~~ 666 (856)
.+++||++|.|. |. .++++.++ .+...|++++-. ++.-+.-. ++....+.+.+++.+.||+.+ .|++
T Consensus 150 ~PkrVLIIGgGd-G~-tlrelLk~-~~v~~It~VEID--peVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~--fL~~ 222 (374)
T PRK01581 150 DPKRVLILGGGD-GL-ALREVLKY-ETVLHVDLVDLD--GSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE--FLSS 222 (374)
T ss_pred CCCEEEEECCCH-HH-HHHHHHhc-CCCCeEEEEeCC--HHHHHHHHhccccchhccccCCCCceEEEECcHHH--HHHh
Confidence 467999999884 33 44555544 344678888863 33322211 111223456678889999985 4544
No 128
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.14 E-value=1e+02 Score=32.06 Aligned_cols=66 Identities=15% Similarity=0.040 Sum_probs=39.2
Q ss_pred CeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH
Q 003021 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER 373 (856)
Q Consensus 295 ~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r 373 (856)
.+++|.|.+ ..|..++++|.+.+. .++++..++.+..+++.+..........++..+.++++.+++
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~-------------~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGY-------------DIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKE 71 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence 578999976 589999999988654 455544555555554433221111134455566666665544
No 129
>PRK07074 short chain dehydrogenase; Provisional
Probab=43.05 E-value=52 Score=34.58 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=44.3
Q ss_pred CeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+.++|.|. |..+..+++.|.+ .|..|.++...+ ++.+.+.+ .+.+.++.++.+|.+|.+.+.++
T Consensus 3 k~ilItGat~~iG~~la~~L~~---~g~~v~~~~r~~--~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~ 67 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLA---AGDRVLALDIDA--AALAAFAD----ALGDARFVPVACDLTDAASLAAA 67 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH----HhcCCceEEEEecCCCHHHHHHH
Confidence 46888887 4689999999964 577888887532 22222221 22344677899999999988765
No 130
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=43.05 E-value=4.8e+02 Score=30.44 Aligned_cols=24 Identities=8% Similarity=0.284 Sum_probs=20.4
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcC
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYH 317 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~ 317 (856)
...++|+|.|+.+..+++.+.+..
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~~~ 148 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQSNP 148 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhhCc
Confidence 456999999999999999997643
No 131
>COG4292 Predicted membrane protein [Function unknown]
Probab=42.91 E-value=25 Score=39.40 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhhccccccccCCcchhHHHHHHHHHHHHHHH
Q 003021 225 LEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYS 266 (856)
Q Consensus 225 ~~dalw~~~~~vt~st~g~gd~T~~gRl~~v~l~l~Gi~~fa 266 (856)
+..++||+|...|.-|.-+|..+..-|++.++.+++|+++-.
T Consensus 57 l~lalWW~Wi~tT~ftnr~g~e~~~~rl~l~~~Mf~~vlLa~ 98 (387)
T COG4292 57 LILALWWAWIHTTWFTNRLGTEIEPVRLLLLVLMFFGVLLAA 98 (387)
T ss_pred HHHHHHHHHHhhHHHHHhcCCchhhHHHHHHHHHHHHHHHHH
Confidence 677899999999999889999999999999999999986544
No 132
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=42.74 E-value=33 Score=29.56 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=27.7
Q ss_pred eEEEEeccccHHHHHHHHhcccCCCceEEEEcCCC
Q 003021 596 RILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVP 630 (856)
Q Consensus 596 ~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p 630 (856)
+++|+|.|-.+.+++..|.+ .|.++++++..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~---~g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE---LGKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH---TTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHH---hCcEEEEEeccc
Confidence 68999999999999999975 578899998743
No 133
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=42.11 E-value=1.3e+02 Score=31.36 Aligned_cols=25 Identities=4% Similarity=-0.122 Sum_probs=19.6
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHhcCc
Q 003021 294 SDHIIVCGVNS-HLSFILKQLNKYHE 318 (856)
Q Consensus 294 ~~HiII~G~~~-~~~~li~eL~~~~~ 318 (856)
...++|.|.+. .|..++++|.+.+.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~ 27 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW 27 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 34788999764 89999999987654
No 134
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=42.08 E-value=3.9e+02 Score=29.83 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=33.5
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHh
Q 003021 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN 350 (856)
Q Consensus 294 ~~HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~ 350 (856)
..-.||.|.++ .|...++||.+.+- .||+ +.++++.++....+
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~-------------nvvL-IsRt~~KL~~v~kE 92 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGF-------------NVVL-ISRTQEKLEAVAKE 92 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCC-------------EEEE-EeCCHHHHHHHHHH
Confidence 47789999886 89999999998654 5554 57788888876654
No 135
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=42.07 E-value=1.3e+02 Score=31.28 Aligned_cols=26 Identities=19% Similarity=0.033 Sum_probs=20.6
Q ss_pred CCCeEEEEcCC-chHHHHHHHHHhcCc
Q 003021 293 ESDHIIVCGVN-SHLSFILKQLNKYHE 318 (856)
Q Consensus 293 ~~~HiII~G~~-~~~~~li~eL~~~~~ 318 (856)
...+++|.|.+ ..|..++++|.+.+.
T Consensus 5 ~~~~~lItG~s~~iG~~la~~l~~~g~ 31 (247)
T PRK12935 5 NGKVAIVTGGAKGIGKAITVALAQEGA 31 (247)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 35689999965 489999999987654
No 136
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=42.03 E-value=2.8e+02 Score=32.20 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=63.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
....++|+|.|..|..+++.|...+. ..|++ .+++.+..+.+...+ +.+++ ..+++.
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~------------~~V~v-~~r~~~ra~~la~~~-----g~~~~-----~~~~~~ 237 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGV------------RKITV-ANRTLERAEELAEEF-----GGEAI-----PLDELP 237 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCC------------CeEEE-EeCCHHHHHHHHHHc-----CCcEe-----eHHHHH
Confidence 35689999999999999999976543 24554 577666666665532 22221 224444
Q ss_pred HcCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCcHHH-HHhcCCCeEEehH
Q 003021 373 RAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCEL-LKSLSGLKVEPVE 441 (856)
Q Consensus 373 rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~~~~-l~~~g~~~Vi~~~ 441 (856)
++ +..||. ||.++..+..-.+...+...+.-+. ....+++=+..|.+.+- +....+..++..+
T Consensus 238 ~~-l~~aDv-VI~aT~s~~~~i~~~~l~~~~~~~~----~~~~vviDla~Prdid~~v~~l~~v~l~~vD 301 (423)
T PRK00045 238 EA-LAEADI-VISSTGAPHPIIGKGMVERALKARR----HRPLLLVDLAVPRDIEPEVGELPGVYLYDVD 301 (423)
T ss_pred HH-hccCCE-EEECCCCCCcEEcHHHHHHHHhhcc----CCCeEEEEeCCCCCCcccccccCCeEEEEHH
Confidence 33 467895 4455543322223444433332111 12235666666665542 3222222445554
No 137
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=41.93 E-value=1.3e+02 Score=28.95 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=21.0
Q ss_pred eEEEEcCCchHHHHHHHHHhcCc
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~ 318 (856)
||+|+|.|..|..+++.|...+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv 23 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV 23 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC
Confidence 68999999999999999998765
No 138
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.91 E-value=1.6e+02 Score=32.87 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=38.1
Q ss_pred CCCeEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCC
Q 003021 293 ESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLT 366 (856)
Q Consensus 293 ~~~HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~ 366 (856)
...|++|.|-++ .+..+..++...++ +|.++ -++.+.++++.+.+.......+|-+.+.+
T Consensus 32 ~~~hi~itggS~glgl~la~e~~~~ga-------------~Vti~-ar~~~kl~~a~~~l~l~~~~~~v~~~S~d 92 (331)
T KOG1210|consen 32 PRRHILITGGSSGLGLALALECKREGA-------------DVTIT-ARSGKKLLEAKAELELLTQVEDVSYKSVD 92 (331)
T ss_pred ccceEEEecCcchhhHHHHHHHHHccC-------------ceEEE-eccHHHHHHHHhhhhhhhccceeeEeccc
Confidence 359999999886 78889999988765 56664 45566666655543222222335555544
No 139
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.77 E-value=1.1e+02 Score=31.56 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=38.8
Q ss_pred CCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
..+++|.|. |..|..++++|.+.+. .++++..++.+..+.+.+.....-....++..+.++.+.+.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~-------------~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 71 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA-------------KVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVE 71 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------------EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 457899986 5699999999987654 45554255555554444322111112445555666665554
Q ss_pred H
Q 003021 373 R 373 (856)
Q Consensus 373 r 373 (856)
+
T Consensus 72 ~ 72 (247)
T PRK05565 72 N 72 (247)
T ss_pred H
Confidence 4
No 140
>PRK12746 short chain dehydrogenase; Provisional
Probab=41.39 E-value=1.4e+02 Score=31.22 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=39.3
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|.|.+ ..|..++++|.+.+. .++++..++.+..++..+.....-....++..|-++.+.+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~-------------~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~ 72 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGA-------------LVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVK 72 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHH
Confidence 4678999965 599999999987654 45554455555555444332111112445556666655554
Q ss_pred H
Q 003021 373 R 373 (856)
Q Consensus 373 r 373 (856)
+
T Consensus 73 ~ 73 (254)
T PRK12746 73 K 73 (254)
T ss_pred H
Confidence 4
No 141
>PLN02780 ketoreductase/ oxidoreductase
Probab=41.22 E-value=1.7e+02 Score=32.49 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=31.1
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHh
Q 003021 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN 350 (856)
Q Consensus 294 ~~HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~ 350 (856)
...++|.|.+. .|..++++|.+.+. .|++ .+++++.++++.++
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~-------------~Vil-~~R~~~~l~~~~~~ 96 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL-------------NLVL-VARNPDKLKDVSDS 96 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------------CEEE-EECCHHHHHHHHHH
Confidence 45788899765 89999999987654 4554 57777777766544
No 142
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=40.86 E-value=1.2e+02 Score=32.02 Aligned_cols=66 Identities=14% Similarity=0.004 Sum_probs=38.2
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
..+++|.|.+. .|..++++|.+.+. .++++ +++.+.+++..+.+........++..+.++.+.++
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~-------------~vv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 75 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGA-------------TIVFN-DINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQ 75 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------eEEEE-eCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 45788889764 88999999987654 45554 66665555544432111112334444555544443
Q ss_pred H
Q 003021 373 R 373 (856)
Q Consensus 373 r 373 (856)
+
T Consensus 76 ~ 76 (265)
T PRK07097 76 A 76 (265)
T ss_pred H
Confidence 3
No 143
>PRK07326 short chain dehydrogenase; Provisional
Probab=40.70 E-value=1.3e+02 Score=31.10 Aligned_cols=64 Identities=9% Similarity=0.083 Sum_probs=39.3
Q ss_pred CCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|.|. |..|..++++|.+.+. .|+++ .++++..+.+.+.+... .+..++..+.++.+.++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~-------------~V~~~-~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~ 70 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY-------------KVAIT-ARDQKELEEAAAELNNK-GNVLGLAADVRDEADVQ 70 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-------------EEEEe-eCCHHHHHHHHHHHhcc-CcEEEEEccCCCHHHHH
Confidence 467889986 5799999999987543 45554 56665555554433211 24555666666655444
No 144
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=40.69 E-value=2e+02 Score=36.38 Aligned_cols=98 Identities=9% Similarity=0.205 Sum_probs=48.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhc---CCCCCHHHHHHHHHHhhhccccccccCCcchhHHHHHHHHHH
Q 003021 185 FNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFR---DETQSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWG 261 (856)
Q Consensus 185 fd~~~~~~~~~~~~~l~~~~~~iv~~g~~l~~~~e---g~~~s~~dalw~~~~~vt~st~g~gd~T~~gRl~~v~l~l~G 261 (856)
|.+++++-+..++.+.+++.+++++++.+++..+. ....+|.+++-..+..+ .....+.+.-..+|++++++..+=
T Consensus 581 ~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v~~f~~f~~s~~t~~~~~-~G~~~~~~i~~~~r~LG~~~~~~~ 659 (798)
T KOG3599|consen 581 FSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQVSDFRTFVASIVTLLRYI-LGDFCPAEIFHANRILGPLLFLTY 659 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCChHHHHHHHHHHHHHH-hccCCccccccCCchHHHHHHHHH
Confidence 55667777777776666666555555555555553 23455666665222111 111223334456777666543332
Q ss_pred H-----HHHHHHHHHHHHHHHHHHHHH
Q 003021 262 I-----LFYSRLLSTMTEQFRNNMQKL 283 (856)
Q Consensus 262 i-----~~fa~li~~it~~l~~~~~~l 283 (856)
+ +++-++.++|-+...+....+
T Consensus 660 v~~v~~illnmF~aiI~~~~~evk~~~ 686 (798)
T KOG3599|consen 660 VFVVSFILLNLFVAIINDTYGEVKADL 686 (798)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhHHH
Confidence 2 223344455555555433333
No 145
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=40.60 E-value=1.5e+02 Score=30.56 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=26.9
Q ss_pred CCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCC
Q 003021 594 KERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDV 629 (856)
Q Consensus 594 ~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~ 629 (856)
..||+|+|-|-.+.++++.|..... ..+++++..
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV--g~i~lvD~d 52 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI--DSITIVDHR 52 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC--CEEEEEECC
Confidence 5899999999999999999975422 248888753
No 146
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=40.49 E-value=2.9e+02 Score=30.03 Aligned_cols=71 Identities=6% Similarity=0.030 Sum_probs=44.0
Q ss_pred CeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHc
Q 003021 295 DHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERA 374 (856)
Q Consensus 295 ~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA 374 (856)
=.|-|+|+|..|..+++.|..... .-.++.+.+.+++..+.+.+.+ +.. ...++.+.|.
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~-----------~~el~aV~dr~~~~a~~~a~~~-----g~~---~~~~~~eell-- 65 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLP-----------GLTLSAVAVRDPQRHADFIWGL-----RRP---PPVVPLDQLA-- 65 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCC-----------CeEEEEEECCCHHHHHHHHHhc-----CCC---cccCCHHHHh--
Confidence 358899999999999999875311 0146656788777766655432 210 0123455553
Q ss_pred CccccCeEEEecCC
Q 003021 375 AANKARAIIILPTK 388 (856)
Q Consensus 375 ~v~~A~aVIIl~~~ 388 (856)
.++|.|+++++.
T Consensus 66 --~~~D~Vvi~tp~ 77 (271)
T PRK13302 66 --THADIVVEAAPA 77 (271)
T ss_pred --cCCCEEEECCCc
Confidence 457988877653
No 147
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=40.40 E-value=1.3e+02 Score=31.61 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=33.5
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHh
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN 350 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~ 350 (856)
..-++|+|.|+.+..=++-|..++. .++|+++.-.+++..+.+.
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga-------------~v~Vvs~~~~~el~~~~~~ 55 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGA-------------DVTVVSPEFEPELKALIEE 55 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-------------EEEEEcCCccHHHHHHHHh
Confidence 4468999999999999999988755 5677677666667766653
No 148
>PRK06194 hypothetical protein; Provisional
Probab=40.34 E-value=57 Score=35.01 Aligned_cols=67 Identities=9% Similarity=-0.016 Sum_probs=44.9
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+++||.|.+ ..|..++++|.+ .|..|++++..+. ...+...++ .-.+.+++++.+|.+|.+.++++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~---~G~~V~~~~r~~~-~~~~~~~~~---~~~~~~~~~~~~D~~d~~~~~~~ 73 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAA---LGMKLVLADVQQD-ALDRAVAEL---RAQGAEVLGVRTDVSDAAQVEAL 73 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHH---CCCEEEEEeCChH-HHHHHHHHH---HhcCCeEEEEECCCCCHHHHHHH
Confidence 3679999975 579999999964 5778888876321 111221211 11145678899999999998875
No 149
>PRK07024 short chain dehydrogenase; Provisional
Probab=40.16 E-value=1.2e+02 Score=31.97 Aligned_cols=65 Identities=6% Similarity=0.139 Sum_probs=38.6
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
..+++|.|.+ -.|..++++|.+.+. .|++ .+++.+.++++.+...... ...++..|.++.+.++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-------------~v~~-~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~i~ 66 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-------------TLGL-VARRTDALQAFAARLPKAA-RVSVYAADVRDADALA 66 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHhcccCC-eeEEEEcCCCCHHHHH
Confidence 3578999955 589999999987543 4554 4666666665544321111 2344555555554443
Q ss_pred H
Q 003021 373 R 373 (856)
Q Consensus 373 r 373 (856)
+
T Consensus 67 ~ 67 (257)
T PRK07024 67 A 67 (257)
T ss_pred H
Confidence 3
No 150
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=39.90 E-value=1.4e+02 Score=30.67 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=37.9
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|.|.+ ..|..+++.|.+.+. .|+++..++.+..+...+.+...-..+.++..+.++.+.+.
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~-------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 71 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGA-------------NVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVE 71 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 3468888865 589999999988655 46555554443333333222111113344555655655554
Q ss_pred Hc
Q 003021 373 RA 374 (856)
Q Consensus 373 rA 374 (856)
++
T Consensus 72 ~~ 73 (248)
T PRK05557 72 RA 73 (248)
T ss_pred HH
Confidence 43
No 151
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=39.84 E-value=2.8e+02 Score=31.24 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=27.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhcccCCCc-eEEEEcCC
Q 003021 593 PKERILLLGWRPDVVEMIEEYDNYLGPGS-VLEILSDV 629 (856)
Q Consensus 593 ~~~~vLI~Gw~r~~~~li~eL~~~~~~gs-~v~Ii~~~ 629 (856)
...+|+|+|-|..|..+++.|.. .|. .++|++..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~---aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVR---AGIGKLTIADRD 57 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH---cCCCEEEEEcCC
Confidence 35789999999999999999964 454 78888763
No 152
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=39.51 E-value=1.3e+02 Score=31.27 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=38.5
Q ss_pred CCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
..+++|.|. |..|..++++|.+.+. .|+++ +++++..+..............++..+-++++.++
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~-------------~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 69 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA-------------KVVIA-DLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAIN 69 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------eEEEE-eCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHH
Confidence 357999995 5699999999987654 45554 55555555443322111113444555655555554
Q ss_pred H
Q 003021 373 R 373 (856)
Q Consensus 373 r 373 (856)
+
T Consensus 70 ~ 70 (258)
T PRK12429 70 A 70 (258)
T ss_pred H
Confidence 4
No 153
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=39.35 E-value=48 Score=27.68 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=31.3
Q ss_pred CCCHHHHHccCC-ceEEEEEEECCEEEECCCC---CceecCCCEEEEEec
Q 003021 482 GIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPND---DETLQPTDKILFIAP 527 (856)
Q Consensus 482 G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~---d~vI~~gD~LivIa~ 527 (856)
|.|..|+...+. +.--+++..||++ .|.. ++.|++||++-++..
T Consensus 14 ~~tv~~ll~~l~~~~~~i~V~vNg~~--v~~~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 14 GATLAELLEELGLDPRGVAVALNGEI--VPRSEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCCHHHHHHHcCCCCCcEEEEECCEE--cCHHHcCceecCCCCEEEEEEe
Confidence 688999876654 3334466679985 4444 389999999988754
No 154
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=39.31 E-value=2.3e+02 Score=32.77 Aligned_cols=92 Identities=11% Similarity=0.248 Sum_probs=44.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhc---CCCCCHHHHHHHHHHhhhccccccccCC----cchhHHHHHH
Q 003021 185 FNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFR---DETQSLEDCLWEAWACLISSSTHLKQRT----RVERVIGFIL 257 (856)
Q Consensus 185 fd~~~~~~~~~~~~~l~~~~~~iv~~g~~l~~~~e---g~~~s~~dalw~~~~~vt~st~g~gd~T----~~gRl~~v~l 257 (856)
+-+.+++....++.++++.+++++..+.+++..+. ....|+..++...+..+. ...++++.. ..|.++-+..
T Consensus 324 ~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~~~f~s~~~s~~tl~~~l~-g~~~~~~~~~~~~~lg~l~~~~~ 402 (425)
T PF08016_consen 324 LSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYSEDFSSFSSSLVTLFRMLL-GDFDYDELYQANPVLGPLFFFSF 402 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCHHHHHHHHHHHhc-CCCchhhhhcccccHHHHHHHHH
Confidence 45555655555555655555444444444443332 245678888874433332 224555533 3444433333
Q ss_pred HHH-HHHHHHHHHHHHHHHHH
Q 003021 258 AIW-GILFYSRLLSTMTEQFR 277 (856)
Q Consensus 258 ~l~-Gi~~fa~li~~it~~l~ 277 (856)
++. -++++-++++++.+..+
T Consensus 403 ~~~~~~illNl~iaIi~~~y~ 423 (425)
T PF08016_consen 403 MFLVFFILLNLFIAIINDSYE 423 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 222 22334455555555443
No 155
>PLN02214 cinnamoyl-CoA reductase
Probab=39.07 E-value=1.6e+02 Score=32.79 Aligned_cols=81 Identities=11% Similarity=0.092 Sum_probs=46.7
Q ss_pred CCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
..+++|.|. |-.|..++++|.+.++ .|+.+..............+......+.++.++..+.+.+.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~-------------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 76 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY-------------TVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALK 76 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-------------EEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHH
Confidence 457999997 6799999999998765 45544332111111111111111113556666766777776
Q ss_pred HcCccccCeEEEecCC
Q 003021 373 RAAANKARAIIILPTK 388 (856)
Q Consensus 373 rA~v~~A~aVIIl~~~ 388 (856)
++ ++.++.||-++..
T Consensus 77 ~~-~~~~d~Vih~A~~ 91 (342)
T PLN02214 77 AA-IDGCDGVFHTASP 91 (342)
T ss_pred HH-HhcCCEEEEecCC
Confidence 65 4468877776653
No 156
>PRK04148 hypothetical protein; Provisional
Probab=38.62 E-value=1.1e+02 Score=29.85 Aligned_cols=51 Identities=16% Similarity=0.286 Sum_probs=38.0
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecC
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSL 365 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~ 365 (856)
...++++|.| .|..++..|.+.++ .|+. .|.+++..+...+. +.+++..+-
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~-------------~Via-IDi~~~aV~~a~~~------~~~~v~dDl 67 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGF-------------DVIV-IDINEKAVEKAKKL------GLNAFVDDL 67 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCC-------------EEEE-EECCHHHHHHHHHh------CCeEEECcC
Confidence 3679999999 88889999987654 4443 68888877776553 677787773
No 157
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=38.58 E-value=1e+02 Score=32.45 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=29.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCC
Q 003021 593 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVP 630 (856)
Q Consensus 593 ~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p 630 (856)
..++|+|+|+|+.+..=++.|. ..|..+++++...
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll---~~ga~v~Vvs~~~ 45 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLL---KAGADVTVVSPEF 45 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHH---hcCCEEEEEcCCc
Confidence 3578999999999998888885 5688899999854
No 158
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=38.51 E-value=67 Score=27.54 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=33.6
Q ss_pred CCCHHHHHccCC-ceEEEEEEECCEEEECCC---CCceecCCCEEEEEe
Q 003021 482 GIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPN---DDETLQPTDKILFIA 526 (856)
Q Consensus 482 G~tf~el~~~~~-~aivIGI~r~G~~~lnP~---~d~vI~~gD~LivIa 526 (856)
+.|+.|+...+. +.-.+++..||++ .|. .++.++.||++-++.
T Consensus 17 ~~tv~dLL~~l~~~~~~vav~vNg~i--Vpr~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 17 GTTVADLLAQLGLNPEGVAVAVNGEI--VPRSQWADTILKEGDRIEVVR 63 (68)
T ss_pred CCcHHHHHHHhCCCCceEEEEECCEE--ccchhhhhccccCCCEEEEEE
Confidence 389999877655 5667777779994 675 788999999998764
No 159
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=38.34 E-value=2.6e+02 Score=30.95 Aligned_cols=66 Identities=18% Similarity=0.102 Sum_probs=43.0
Q ss_pred CeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+++||.|. |-.|..+++.|.+.. .+..|++++..+. ....+.. .+.+.++.++.||.+|.+.|.++
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g-~~~~V~~~~r~~~--~~~~~~~----~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENY-NPKKIIIYSRDEL--KQWEMQQ----KFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhC-CCcEEEEEcCChh--HHHHHHH----HhCCCcEEEEEccCCCHHHHHHH
Confidence 57899997 568999999997532 2356777764321 1111111 12223567899999999999876
No 160
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.25 E-value=1.6e+02 Score=30.56 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=28.4
Q ss_pred CCCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHH
Q 003021 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 348 (856)
Q Consensus 293 ~~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~ 348 (856)
...+++|.|.+ ..|..++++|.+.+. .|++ ..++.+..+++.
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-------------~Vi~-~~r~~~~~~~~~ 48 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGV-------------NVGL-LARTEENLKAVA 48 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHH
Confidence 35678999966 588999999987544 4554 466555554443
No 161
>PLN02583 cinnamoyl-CoA reductase
Probab=38.02 E-value=1.9e+02 Score=31.50 Aligned_cols=77 Identities=9% Similarity=0.051 Sum_probs=46.3
Q ss_pred CCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCC-ChhHHHHHHHhhccccCCceEEEecCCCHHHH
Q 003021 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL-PRKQMDKLAENIAKDLNHIDILSKSLTLTKSY 371 (856)
Q Consensus 294 ~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~-~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L 371 (856)
+.+++|.|. |-.|..++++|.+.++ .|+++... ++...+.....+.....++.++.++.++.+.+
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~-------------~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~ 72 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY-------------TVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSI 72 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-------------EEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHH
Confidence 568999996 5699999999998765 45554432 23333222222111112466677777777777
Q ss_pred HHcCccccCeEEE
Q 003021 372 ERAAANKARAIII 384 (856)
Q Consensus 372 ~rA~v~~A~aVII 384 (856)
.++ +..+++++-
T Consensus 73 ~~~-l~~~d~v~~ 84 (297)
T PLN02583 73 LDA-LKGCSGLFC 84 (297)
T ss_pred HHH-HcCCCEEEE
Confidence 665 445676653
No 162
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=37.89 E-value=1.3e+02 Score=34.25 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=55.1
Q ss_pred CCCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhc------ccCCCCccCceEEEEECCCCCHHHHH
Q 003021 592 GPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASN------AIGHGKLKNVQVFHKIGNPLNFETLK 665 (856)
Q Consensus 592 ~~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~------~~~~~~l~~~~V~~i~GD~td~~~L~ 665 (856)
+..+++||+|+|+- -.++||.+| +.--+|+.++-.| ++.+..+ ..+...+.+.+|+.+.-|+.+ -|+
T Consensus 288 ~~a~~vLvlGGGDG--LAlRellky-P~~~qI~lVdLDP--~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~--wlr 360 (508)
T COG4262 288 RGARSVLVLGGGDG--LALRELLKY-PQVEQITLVDLDP--RMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ--WLR 360 (508)
T ss_pred cccceEEEEcCCch--HHHHHHHhC-CCcceEEEEecCH--HHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH--HHH
Confidence 35799999999965 356788776 2245788888633 4433332 245667888999999999875 567
Q ss_pred hccccccccccCCCCCCcEEEE-EeCCC
Q 003021 666 DTIMNIQNSFKDGEELPLSIVV-ISDRE 692 (856)
Q Consensus 666 ~a~i~i~~a~~~d~~~~~siII-Lsd~d 692 (856)
.+.- ++| ++|| +.|.+
T Consensus 361 ~a~~------~fD-----~vIVDl~DP~ 377 (508)
T COG4262 361 TAAD------MFD-----VVIVDLPDPS 377 (508)
T ss_pred hhcc------ccc-----EEEEeCCCCC
Confidence 6632 466 5555 55543
No 163
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=37.42 E-value=47 Score=37.55 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=39.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHhhhcccccccc----CCcc---hhHHHHHHHH
Q 003021 187 VQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQ----RTRV---ERVIGFILAI 259 (856)
Q Consensus 187 ~~~~~~~~~~~~~l~~~~~~iv~~g~~l~~~~eg~~~s~~dalw~~~~~vt~st~g~gd----~T~~---gRl~~v~l~l 259 (856)
+.+++........++++.+++++++++++...+ .+.++.+++..+...+...|.+.|. -+.. ++++.+++++
T Consensus 258 r~i~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~ 336 (354)
T PF02386_consen 258 RRISEQTVRKAFAFFFLYFIIVFISTLLLSLDG-LDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLML 336 (354)
T ss_dssp ---TTSHHHHHCCHHHHHHHHHHHHHHHHHHHS-S-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHH
T ss_pred eeechhhhhhHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHH
Confidence 334444322233333444455556656655543 2222799999877776666554444 2234 8988877776
Q ss_pred HHH-HHHHHH
Q 003021 260 WGI-LFYSRL 268 (856)
Q Consensus 260 ~Gi-~~fa~l 268 (856)
.|= -+++.+
T Consensus 337 ~GRle~~~~l 346 (354)
T PF02386_consen 337 LGRLEILPVL 346 (354)
T ss_dssp HHHTTTHHHH
T ss_pred HhCccHHHHH
Confidence 663 444433
No 164
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=37.31 E-value=2.7e+02 Score=33.86 Aligned_cols=70 Identities=9% Similarity=-0.047 Sum_probs=44.8
Q ss_pred CCCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhc-ccCCCCc------cCceEEEEECCCCCHHHH
Q 003021 593 PKERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASN-AIGHGKL------KNVQVFHKIGNPLNFETL 664 (856)
Q Consensus 593 ~~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~-~~~~~~l------~~~~V~~i~GD~td~~~L 664 (856)
..+.++|.|. |..|..++++|.+ .|..|.++... .++...+. .+....+ ...++.++.||.++.+.+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk---~G~~Vval~Rn--~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLK---LGFRVRAGVRS--AQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---CCCeEEEEeCC--HHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 4467899997 5789999999964 57788887653 22222211 1100000 123477899999999998
Q ss_pred Hhc
Q 003021 665 KDT 667 (856)
Q Consensus 665 ~~a 667 (856)
+++
T Consensus 154 ~~a 156 (576)
T PLN03209 154 GPA 156 (576)
T ss_pred HHH
Confidence 775
No 165
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.29 E-value=1.6e+02 Score=34.89 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=22.5
Q ss_pred cccCCCeEEEEcCCchHHHHHHHHHhcCc
Q 003021 290 QVLESDHIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 290 ~v~~~~HiII~G~~~~~~~li~eL~~~~~ 318 (856)
.+....+++|+|.|..|...++-|...+.
T Consensus 8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~G~ 36 (488)
T PRK03369 8 PLLPGAPVLVAGAGVTGRAVLAALTRFGA 36 (488)
T ss_pred cccCCCeEEEEcCCHHHHHHHHHHHHCCC
Confidence 34456789999999999999987765443
No 166
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=37.25 E-value=1.6e+02 Score=30.54 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=44.6
Q ss_pred CCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|.|. |..|..++++|.+.+. .|+++ .++.+..+...+.+........++..+..+.+.++
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~-------------~V~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~ 71 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA-------------EVIVV-DICGDDAAATAELVEAAGGKARARQVDVRDRAALK 71 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 446888885 5689999999987654 45544 55544444433322111123455666666666655
Q ss_pred HcCc------cccCeEEEec
Q 003021 373 RAAA------NKARAIIILP 386 (856)
Q Consensus 373 rA~v------~~A~aVIIl~ 386 (856)
++-- ...+.+|-.+
T Consensus 72 ~~~~~~~~~~~~~d~vi~~a 91 (251)
T PRK12826 72 AAVAAGVEDFGRLDILVANA 91 (251)
T ss_pred HHHHHHHHHhCCCCEEEECC
Confidence 5421 2466555443
No 167
>PRK05993 short chain dehydrogenase; Provisional
Probab=37.15 E-value=1.2e+02 Score=32.61 Aligned_cols=60 Identities=10% Similarity=0.165 Sum_probs=39.6
Q ss_pred CCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|.|. |..|..++++|.+.+. .|++ ..++++.++.+.+. +..++..|.++.+.++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~-------------~Vi~-~~r~~~~~~~l~~~------~~~~~~~Dl~d~~~~~ 63 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW-------------RVFA-TCRKEEDVAALEAE------GLEAFQLDYAEPESIA 63 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------------EEEE-EECCHHHHHHHHHC------CceEEEccCCCHHHHH
Confidence 347899998 5689999999987654 4554 46666666655431 5566666766655444
Q ss_pred H
Q 003021 373 R 373 (856)
Q Consensus 373 r 373 (856)
+
T Consensus 64 ~ 64 (277)
T PRK05993 64 A 64 (277)
T ss_pred H
Confidence 3
No 168
>PRK06194 hypothetical protein; Provisional
Probab=37.08 E-value=1.5e+02 Score=31.72 Aligned_cols=67 Identities=7% Similarity=0.101 Sum_probs=39.9
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
..+++|.|.+ -.|..++++|.+.+. .|++ .+++.+.++...+.....-....++.++.++.+.++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~ 71 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM-------------KLVL-ADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVE 71 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-------------EEEE-EeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 4578999965 599999999987654 4554 466655555544332111112344555666666665
Q ss_pred Hc
Q 003021 373 RA 374 (856)
Q Consensus 373 rA 374 (856)
++
T Consensus 72 ~~ 73 (287)
T PRK06194 72 AL 73 (287)
T ss_pred HH
Confidence 54
No 169
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=36.85 E-value=1.6e+02 Score=30.88 Aligned_cols=66 Identities=9% Similarity=0.059 Sum_probs=38.1
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|.|.+ ..|..++++|.+.+. .|++ .+++.+..+.+...+...-....++..+.++++.+.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~-------------~v~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 76 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGA-------------HVLV-NGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVA 76 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-------------eEEE-EeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHH
Confidence 4567888865 589999999987654 4555 466655555544432111113445555555554444
Q ss_pred H
Q 003021 373 R 373 (856)
Q Consensus 373 r 373 (856)
+
T Consensus 77 ~ 77 (256)
T PRK06124 77 A 77 (256)
T ss_pred H
Confidence 3
No 170
>PRK06172 short chain dehydrogenase; Provisional
Probab=36.72 E-value=1.6e+02 Score=30.83 Aligned_cols=41 Identities=7% Similarity=0.033 Sum_probs=28.4
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 348 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~ 348 (856)
...++|.|.+ ..|..++++|.+.+. .|++ .+++++..+.+.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~-------------~v~~-~~r~~~~~~~~~ 48 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA-------------KVVV-ADRDAAGGEETV 48 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-------------EEEE-EeCCHHHHHHHH
Confidence 4678899865 599999999987644 4554 466655555443
No 171
>PLN02583 cinnamoyl-CoA reductase
Probab=36.64 E-value=91 Score=33.99 Aligned_cols=69 Identities=6% Similarity=0.086 Sum_probs=44.5
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCch-hhhhhhcccCCCCccCceEEEEECCCCCHHHHHhcc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLD-DRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTI 668 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~-er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a~ 668 (856)
.++++|.|. |..|..++++|. ..|..|+.+...+.. +....+.+.. -.+.++.++.||.+|.+.+.++-
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll---~~G~~V~~~~R~~~~~~~~~~~~~l~---~~~~~~~~~~~Dl~d~~~~~~~l 76 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLL---SRGYTVHAAVQKNGETEIEKEIRGLS---CEEERLKVFDVDPLDYHSILDAL 76 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHH---hCCCEEEEEEcCchhhhHHHHHHhcc---cCCCceEEEEecCCCHHHHHHHH
Confidence 468999997 468999999995 467788877642211 1111122110 01234677999999999988763
No 172
>PRK08251 short chain dehydrogenase; Provisional
Probab=36.44 E-value=79 Score=32.96 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=44.2
Q ss_pred CeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhc-ccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASN-AIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~-~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+.++|.|... .+..+++.|.+ .|..|.++...+ ++.+.+. ++ ....++.+++++.+|.++.+.+.++
T Consensus 3 k~vlItGas~giG~~la~~l~~---~g~~v~~~~r~~--~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~ 71 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAA---KGRDLALCARRT--DRLEELKAEL-LARYPGIKVAVAALDVNDHDQVFEV 71 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHHHH-HhhCCCceEEEEEcCCCCHHHHHHH
Confidence 5789998765 68899999964 467788777643 2222221 11 0123356788899999999888764
No 173
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.41 E-value=1.4e+02 Score=30.58 Aligned_cols=79 Identities=11% Similarity=0.084 Sum_probs=44.6
Q ss_pred eEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHc
Q 003021 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERA 374 (856)
Q Consensus 296 HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA 374 (856)
.++|.|. |..|..++++|.+.++ .++++...+.+..+.+.+........+.++..+.++.+.++++
T Consensus 8 ~vlItGasg~iG~~l~~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 74 (249)
T PRK12825 8 VALVTGAARGLGRAIALRLARAGA-------------DVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAA 74 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-------------eEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHH
Confidence 5778875 5689999999988655 4555556555544444332211112355666666666555443
Q ss_pred C------ccccCeEEEecC
Q 003021 375 A------ANKARAIIILPT 387 (856)
Q Consensus 375 ~------v~~A~aVIIl~~ 387 (856)
- ....+.+|-++.
T Consensus 75 ~~~~~~~~~~id~vi~~ag 93 (249)
T PRK12825 75 VAAAVERFGRIDILVNNAG 93 (249)
T ss_pred HHHHHHHcCCCCEEEECCc
Confidence 1 134565554443
No 174
>PRK07904 short chain dehydrogenase; Provisional
Probab=36.33 E-value=74 Score=33.77 Aligned_cols=71 Identities=15% Similarity=0.046 Sum_probs=44.5
Q ss_pred CCCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 593 PKERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 593 ~~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
..++++|.|.+. .|..++++|.+. .|..|.++...+.....+...++. ...+.+++++.+|.+|.+..++.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~--gg~~V~~~~r~~~~~~~~~~~~l~--~~~~~~v~~~~~D~~~~~~~~~~ 78 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKN--APARVVLAALPDDPRRDAAVAQMK--AAGASSVEVIDFDALDTDSHPKV 78 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhc--CCCeEEEEeCCcchhHHHHHHHHH--hcCCCceEEEEecCCChHHHHHH
Confidence 457899999875 688999998643 246787776543221222222110 12233678899999998876553
No 175
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=36.31 E-value=3.3e+02 Score=30.09 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=27.7
Q ss_pred CCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCC
Q 003021 594 KERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVP 630 (856)
Q Consensus 594 ~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p 630 (856)
..+|+|+|-|-.+.++++.|..... ..++|++...
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGV--g~itI~D~d~ 53 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGV--KSVTLHDTKP 53 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCC--CeEEEEcCCc
Confidence 5799999999999999999965422 2588887643
No 176
>PLN02427 UDP-apiose/xylose synthase
Probab=36.25 E-value=1e+02 Score=34.92 Aligned_cols=70 Identities=10% Similarity=-0.103 Sum_probs=44.8
Q ss_pred CCCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 593 PKERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 593 ~~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.+|+|.|. |-.|.++++.|.+. .|.+|..++..+ ++...+.+...... ..++.++.||.+|.+.++++
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~--~g~~V~~l~r~~--~~~~~l~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~ 83 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTE--TPHKVLALDVYN--DKIKHLLEPDTVPW-SGRIQFHRINIKHDSRLEGL 83 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhc--CCCEEEEEecCc--hhhhhhhccccccC-CCCeEEEEcCCCChHHHHHH
Confidence 3467999998 67899999999643 246788776532 22222111000001 12477899999999998876
No 177
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=36.06 E-value=92 Score=25.90 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=31.3
Q ss_pred CCCHHHHHccCC-ceEEEEEEECCEEEECC---CCCceecCCCEEEEEec
Q 003021 482 GIKYRQLRRGFQ-EAVVCGLYRNGKIYFHP---NDDETLQPTDKILFIAP 527 (856)
Q Consensus 482 G~tf~el~~~~~-~aivIGI~r~G~~~lnP---~~d~vI~~gD~LivIa~ 527 (856)
|.|+.|+...+. ..-.+++..||++ .| ..++.|++||++-++-.
T Consensus 13 ~~tv~~ll~~l~~~~~~v~v~vN~~i--v~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 13 GLTLAALLESLGLDPRRVAVAVNGEI--VPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCcHHHHHHHcCCCCCeEEEEECCEE--cCHHHcCceecCCCCEEEEEEe
Confidence 678999876654 3455667779985 44 24579999999987753
No 178
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=36.04 E-value=90 Score=40.50 Aligned_cols=66 Identities=12% Similarity=-0.009 Sum_probs=44.8
Q ss_pred CCCCeEEEEeccccHHHHHHHHhcccCCCc-------------eEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCC
Q 003021 592 GPKERILLLGWRPDVVEMIEEYDNYLGPGS-------------VLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNP 658 (856)
Q Consensus 592 ~~~~~vLI~Gw~r~~~~li~eL~~~~~~gs-------------~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~ 658 (856)
...++|+|+|-|+.+..+++.|.+. ++. .|++.+. ..++.+.+.+ .++++ ..+.-|.
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la~----~~~~~--~~v~lDv 636 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASL--YLKDAKETVE----GIENA--EAVQLDV 636 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC--cCccccccccccccccEEEEECC--CHHHHHHHHH----hcCCC--ceEEeec
Confidence 4578999999999999999999653 332 3555554 2334444433 23343 4588899
Q ss_pred CCHHHHHhc
Q 003021 659 LNFETLKDT 667 (856)
Q Consensus 659 td~~~L~~a 667 (856)
+|.+.|.++
T Consensus 637 ~D~e~L~~~ 645 (1042)
T PLN02819 637 SDSESLLKY 645 (1042)
T ss_pred CCHHHHHHh
Confidence 999999875
No 179
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=35.98 E-value=4.2e+02 Score=29.98 Aligned_cols=62 Identities=10% Similarity=-0.105 Sum_probs=43.3
Q ss_pred CCCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 593 PKERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 593 ~~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.+|+|.|. |-.|..+++.|.+ .|.+|+.++..+. ..+.. . ...+.++.||.++.+.+.++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~---~G~~V~~v~r~~~----~~~~~-----~-~~~~~~~~~Dl~d~~~~~~~ 82 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA---EGHYIIASDWKKN----EHMSE-----D-MFCHEFHLVDLRVMENCLKV 82 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh---CCCEEEEEEeccc----ccccc-----c-cccceEEECCCCCHHHHHHH
Confidence 5688999999 7899999999964 4778888875321 01110 0 11245689999999888775
No 180
>PRK07576 short chain dehydrogenase; Provisional
Probab=35.97 E-value=1.6e+02 Score=31.31 Aligned_cols=67 Identities=9% Similarity=0.053 Sum_probs=38.0
Q ss_pred CCCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHH
Q 003021 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSY 371 (856)
Q Consensus 293 ~~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L 371 (856)
...+++|.|.+ ..|..++++|...+. .|++ .++++++.+...+..........++..|.++.+.+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i 73 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-------------NVAV-ASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAV 73 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHH
Confidence 35689999975 589999999987654 4444 56665555544332211111233344455555444
Q ss_pred HH
Q 003021 372 ER 373 (856)
Q Consensus 372 ~r 373 (856)
++
T Consensus 74 ~~ 75 (264)
T PRK07576 74 EA 75 (264)
T ss_pred HH
Confidence 33
No 181
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=35.80 E-value=71 Score=30.94 Aligned_cols=68 Identities=9% Similarity=0.055 Sum_probs=45.5
Q ss_pred CeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhh-cccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS-NAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l-~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+++||.|.+. .|..+++.|.+. .+..+.++...+..++...+ .++ +-++.++.+++.|.++.+.+++.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~--g~~~v~~~~r~~~~~~~~~l~~~l---~~~~~~~~~~~~D~~~~~~~~~~ 70 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR--GARVVILTSRSEDSEGAQELIQEL---KAPGAKITFIECDLSDPESIRAL 70 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT--TTEEEEEEESSCHHHHHHHHHHHH---HHTTSEEEEEESETTSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CceEEEEeeecccccccccccccc---ccccccccccccccccccccccc
Confidence 4689999775 689999999754 24566666654223333332 222 12357788899999999988876
No 182
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=35.73 E-value=1.7e+02 Score=35.35 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHhhhccccc---cccCCcchhHHHHHHHHHHH-HHHHHHHH
Q 003021 222 TQSLEDCLWEAWACLISSSTH---LKQRTRVERVIGFILAIWGI-LFYSRLLS 270 (856)
Q Consensus 222 ~~s~~dalw~~~~~vt~st~g---~gd~T~~gRl~~v~l~l~Gi-~~fa~li~ 270 (856)
.++|.+-+|.......+.|.. ..+.|+.++++..++++.|= +.+...++
T Consensus 449 ~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~Gpit~~lA 501 (559)
T PRK05482 449 PHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFLPIIPVLA 501 (559)
T ss_pred CCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999654443333333 33568899998888777775 33333333
No 183
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=35.50 E-value=92 Score=32.44 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=44.0
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+ ..+..++++|.+ .|..|.++...+.++....+.+ . +.++.++.+|.++.+.++++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~---~G~~vi~~~r~~~~~~~~~~~~-----~-~~~~~~~~~D~~~~~~~~~~ 70 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAE---AGADIVGAGRSEPSETQQQVEA-----L-GRRFLSLTADLSDIEAIKAL 70 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEcCchHHHHHHHHHh-----c-CCceEEEECCCCCHHHHHHH
Confidence 4678999985 579999999964 5778888876432222222221 1 23567899999999988754
No 184
>PRK10637 cysG siroheme synthase; Provisional
Probab=35.26 E-value=1.6e+02 Score=34.53 Aligned_cols=57 Identities=11% Similarity=-0.083 Sum_probs=38.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCC
Q 003021 593 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLN 660 (856)
Q Consensus 593 ~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td 660 (856)
..++|||+|+|+.+..=++.|.+ .|..|++++..-.+|..+. . ..-++.++..+...
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~---~ga~v~visp~~~~~~~~l-~-------~~~~i~~~~~~~~~ 67 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLD---AGARLTVNALAFIPQFTAW-A-------DAGMLTLVEGPFDE 67 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEcCCCCHHHHHH-H-------hCCCEEEEeCCCCh
Confidence 35899999999998887777754 5778999987533343221 1 12345667777653
No 185
>PRK06924 short chain dehydrogenase; Provisional
Probab=35.22 E-value=1.5e+02 Score=30.84 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=19.3
Q ss_pred CeEEEEcC-CchHHHHHHHHHhcCc
Q 003021 295 DHIIVCGV-NSHLSFILKQLNKYHE 318 (856)
Q Consensus 295 ~HiII~G~-~~~~~~li~eL~~~~~ 318 (856)
.+++|.|. |..|..++++|.+.+.
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~ 26 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT 26 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC
Confidence 37899996 4699999999987654
No 186
>PRK07774 short chain dehydrogenase; Provisional
Probab=35.19 E-value=1.6e+02 Score=30.54 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=21.0
Q ss_pred CCCeEEEEcC-CchHHHHHHHHHhcCc
Q 003021 293 ESDHIIVCGV-NSHLSFILKQLNKYHE 318 (856)
Q Consensus 293 ~~~HiII~G~-~~~~~~li~eL~~~~~ 318 (856)
+...++|.|. |..|..++++|.+.+.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~ 31 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA 31 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC
Confidence 3457999997 5699999999988654
No 187
>PRK07806 short chain dehydrogenase; Provisional
Probab=35.04 E-value=1.8e+02 Score=30.22 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=19.5
Q ss_pred CeEEEEcC-CchHHHHHHHHHhcCc
Q 003021 295 DHIIVCGV-NSHLSFILKQLNKYHE 318 (856)
Q Consensus 295 ~HiII~G~-~~~~~~li~eL~~~~~ 318 (856)
..++|+|. +-.|..++++|.+.++
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~ 31 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGA 31 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCC
Confidence 46889997 5699999999987654
No 188
>PRK09186 flagellin modification protein A; Provisional
Probab=34.95 E-value=77 Score=33.15 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=43.7
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+ ..+..+++.|.+ .|..+.++...+. ..++...++. .......+.++.+|.+|.+.++++
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~---~g~~v~~~~r~~~-~~~~~~~~l~-~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILE---AGGIVIAADIDKE-ALNELLESLG-KEFKSKKLSLVELDITDQESLEEF 73 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEecChH-HHHHHHHHHH-hhcCCCceeEEEecCCCHHHHHHH
Confidence 4689999986 579999999964 5777887765321 1111111110 012233456689999999988775
No 189
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=34.87 E-value=6.1e+02 Score=27.34 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=42.7
Q ss_pred eEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHcC
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAA 375 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA~ 375 (856)
.+.|+|+|..+..+++.|...+. .-.++.+.+.+++..+.+.+.+ +..+ + ++.+.|.
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~-----------~~elv~v~d~~~~~a~~~a~~~-----~~~~-~---~~~~ell--- 59 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRI-----------NAELYAFYDRNLEKAENLASKT-----GAKA-C---LSIDELV--- 59 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCC-----------CeEEEEEECCCHHHHHHHHHhc-----CCee-E---CCHHHHh---
Confidence 48899999999999999876421 0145556788877777665421 2221 1 2333332
Q ss_pred ccccCeEEEecC
Q 003021 376 ANKARAIIILPT 387 (856)
Q Consensus 376 v~~A~aVIIl~~ 387 (856)
.++|.|+++++
T Consensus 60 -~~~DvVvi~a~ 70 (265)
T PRK13304 60 -EDVDLVVECAS 70 (265)
T ss_pred -cCCCEEEEcCC
Confidence 57897777654
No 190
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=34.72 E-value=2.1e+02 Score=32.60 Aligned_cols=113 Identities=14% Similarity=0.190 Sum_probs=70.2
Q ss_pred CCCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhccccc
Q 003021 593 PKERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNI 671 (856)
Q Consensus 593 ~~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a~i~i 671 (856)
...+++|.|++ --|.+++++|.+.. +..+|.+++..|..... ..+ ........+.++.||-.+...+..+--.
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~-~~~~irv~D~~~~~~~~--~~e--~~~~~~~~v~~~~~D~~~~~~i~~a~~~- 76 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENE-LKLEIRVVDKTPTQSNL--PAE--LTGFRSGRVTVILGDLLDANSISNAFQG- 76 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcc-cccEEEEeccCcccccc--chh--hhcccCCceeEEecchhhhhhhhhhccC-
Confidence 36889999955 67999999997653 36788888876531110 011 0011356778899999999988876221
Q ss_pred cccccCCCCCCcEEEEEeC-C--CccCCCCChhhHHHHHHHHHHHHHhhhhCCC
Q 003021 672 QNSFKDGEELPLSIVVISD-R--EWLLGDPSRADKQSAYSLLLAENICNKLGVK 722 (856)
Q Consensus 672 ~~a~~~d~~~~~siIILsd-~--d~~~~~~~~aDa~~l~t~L~~r~l~~~~g~~ 722 (856)
+ .++.++- . +....+.+..+.-|+-....+-+-|.+.|++
T Consensus 77 --~---------~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~ 119 (361)
T KOG1430|consen 77 --A---------VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK 119 (361)
T ss_pred --c---------eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCC
Confidence 1 3444431 1 1112245566667777766666777777765
No 191
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.72 E-value=86 Score=32.57 Aligned_cols=65 Identities=5% Similarity=0.001 Sum_probs=44.9
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhh-cccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS-NAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l-~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|.+ ..+..++++|.+ .|..|.++...+ ++.+.+ ..+. . +.+++++.+|.+|.+.++++
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~---~G~~V~~~~r~~--~~~~~~~~~~~--~--~~~~~~~~~D~~~~~~~~~~ 71 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAA---EGARVVVTDRNE--EAAERVAAEIL--A--GGRAIAVAADVSDEADVEAA 71 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHHHh--c--CCeEEEEECCCCCHHHHHHH
Confidence 4688999875 589999999963 577888887643 222221 2110 1 34578899999999999875
No 192
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=34.61 E-value=3.6e+02 Score=31.27 Aligned_cols=119 Identities=16% Similarity=0.249 Sum_probs=63.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...+++|+|.|..|..+++.|...+. ..|++ .+++.+..+.+.+.+ +...+ ..+++.
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~------------~~V~v-~~rs~~ra~~la~~~-----g~~~i-----~~~~l~ 235 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGV------------GKILI-ANRTYERAEDLAKEL-----GGEAV-----KFEDLE 235 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCC------------CEEEE-EeCCHHHHHHHHHHc-----CCeEe-----eHHHHH
Confidence 35789999999999999999987542 14554 566665555555432 21211 123444
Q ss_pred HcCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCC-EEEEEeCcCcHHH-HHhcCCCeEEehHH
Q 003021 373 RAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVP-TIVEVSNPNTCEL-LKSLSGLKVEPVEN 442 (856)
Q Consensus 373 rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~-iIaev~d~~~~~~-l~~~g~~~Vi~~~~ 442 (856)
++ +..||.| |.++.....-.+.+.+...+.- ...+ +++=+..|.+.+. .....+..++..++
T Consensus 236 ~~-l~~aDvV-i~aT~s~~~ii~~e~l~~~~~~------~~~~~~viDla~Prdid~~v~~l~~v~l~~vDd 299 (417)
T TIGR01035 236 EY-LAEADIV-ISSTGAPHPIVSKEDVERALRE------RTRPLFIIDIAVPRDVDPAVARLEGVFLYDVDD 299 (417)
T ss_pred HH-HhhCCEE-EECCCCCCceEcHHHHHHHHhc------CCCCeEEEEeCCCCCCChhhcCcCCeEEEEHHH
Confidence 33 4679954 4444432112233434332221 1123 5666667766543 32223334566653
No 193
>PRK08017 oxidoreductase; Provisional
Probab=34.56 E-value=1.5e+02 Score=31.01 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=35.0
Q ss_pred CeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHH
Q 003021 295 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKS 370 (856)
Q Consensus 295 ~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~ 370 (856)
..++|.|. |..|..++++|.+.+. .|++ ..++.+.++.+.+ .+...+..+-++.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-------------~v~~-~~r~~~~~~~~~~------~~~~~~~~D~~~~~~ 59 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-------------RVLA-ACRKPDDVARMNS------LGFTGILLDLDDPES 59 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------------EEEE-EeCCHHHhHHHHh------CCCeEEEeecCCHHH
Confidence 46999998 7899999999987644 4544 4565555554432 134445555444433
No 194
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=34.46 E-value=76 Score=33.35 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=44.5
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+++||.|.+ ..+..+++.|.+ .|..|.+++..+. +.......+ +-.+.++.++.+|.+|++.++++
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~---~G~~V~~~~r~~~-~~~~~~~~i---~~~~~~~~~~~~D~~~~~~~~~~ 77 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQ---AGAEVILNGRDPA-KLAAAAESL---KGQGLSAHALAFDVTDHDAVRAA 77 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHH---cCCEEEEEeCCHH-HHHHHHHHH---HhcCceEEEEEccCCCHHHHHHH
Confidence 4789999984 579999999963 5778888765321 111111111 01134578899999999988876
No 195
>PRK08265 short chain dehydrogenase; Provisional
Probab=34.45 E-value=91 Score=33.08 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=43.8
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|. +..+..+++.|.+ .|..|.+++..+ ++.+.+.+ .+ +.++.++.+|.++.+.++++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~---~G~~V~~~~r~~--~~~~~~~~----~~-~~~~~~~~~Dl~~~~~~~~~ 70 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVA---AGARVAIVDIDA--DNGAAVAA----SL-GERARFIATDITDDAAIERA 70 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH----Hh-CCeeEEEEecCCCHHHHHHH
Confidence 468899987 4579999999964 577888877532 22111211 11 33577899999999988775
No 196
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=34.45 E-value=91 Score=33.61 Aligned_cols=67 Identities=15% Similarity=0.061 Sum_probs=41.0
Q ss_pred eEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 596 RILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 596 ~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+|+|.|. |-.|..++++|.+. .+...|+.++..+...+.+.+... ..+.++.++.||.+|.+.+.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-HPDAEVIVLDKLTYAGNLENLADL----EDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-CCCCEEEEecCCCcchhhhhhhhh----ccCCCcEEEEcCCcCHHHHHHH
Confidence 4789998 57899999999643 123567776542111111111111 1122466799999999998876
No 197
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.37 E-value=87 Score=32.75 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=43.1
Q ss_pred CeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+.++|.|.+. .+..+++.|.+ .|..+.++...+.+...+....+ .-.+.++.++.+|.++++.+.++
T Consensus 3 k~vlItG~sg~iG~~la~~L~~---~g~~vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 70 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAA---AGFDLAINDRPDDEELAATQQEL---RALGVEVIFFPADVADLSAHEAM 70 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHH---CCCEEEEEecCchhHHHHHHHHH---HhcCCceEEEEecCCCHHHHHHH
Confidence 5688888764 68899999964 47778887754332211111111 01134578899999999888765
No 198
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=34.27 E-value=34 Score=34.43 Aligned_cols=36 Identities=11% Similarity=0.261 Sum_probs=26.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCc
Q 003021 593 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPL 631 (856)
Q Consensus 593 ~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~ 631 (856)
.-+++++||||+.++.+++.|.. .|..|+|.+..|.
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~---~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRG---LGARVTVTEIDPI 57 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHH---TT-EEEEE-SSHH
T ss_pred CCCEEEEeCCCcccHHHHHHHhh---CCCEEEEEECChH
Confidence 35789999999999999999974 5788988887553
No 199
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=34.13 E-value=2.8e+02 Score=27.41 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=30.7
Q ss_pred eEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
+|=++|.|..|..+++.|.+.++ .|.+ -|++++..+.+.+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-------------~v~~-~d~~~~~~~~~~~ 42 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-------------EVTV-YDRSPEKAEALAE 42 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-------------EEEE-EESSHHHHHHHHH
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-------------eEEe-eccchhhhhhhHH
Confidence 67899999999999999988765 4554 5888888888765
No 200
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=34.10 E-value=2.7e+02 Score=30.51 Aligned_cols=64 Identities=16% Similarity=0.044 Sum_probs=41.4
Q ss_pred eEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCC--chhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 596 RILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVP--LDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 596 ~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p--~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+++|.|. |-.|..+++.|.+ .|.+|++++... .......+. .+.+.++.++.||.+|.+.+.++
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~---~g~~V~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Dl~d~~~~~~~ 68 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQ---NGHDVVILDNLCNSKRSVLPVIE-----RLGGKHPTFVEGDIRNEALLTEI 68 (338)
T ss_pred eEEEECCCChHHHHHHHHHHH---CCCeEEEEecCCCchHhHHHHHH-----HhcCCCceEEEccCCCHHHHHHH
Confidence 5889995 7789999999963 577888875321 111111111 12233456799999999988775
No 201
>PRK07454 short chain dehydrogenase; Provisional
Probab=34.08 E-value=2e+02 Score=29.73 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=37.5
Q ss_pred CeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH
Q 003021 295 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER 373 (856)
Q Consensus 295 ~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r 373 (856)
.-++|.|. |..|..++++|.+.+. .|++ .+++++..+.+.+..........++..|.++.+.+.+
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGW-------------DLAL-VARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAP 72 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHH
Confidence 35788886 5689999999987644 4554 4666655555443321111134445555555554433
No 202
>PRK05866 short chain dehydrogenase; Provisional
Probab=34.06 E-value=1.6e+02 Score=31.96 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=29.8
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHh
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN 350 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~ 350 (856)
...++|.|.+ ..|..++++|.+.+. .|++ .+++.+.++++.+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~-------------~Vi~-~~R~~~~l~~~~~~ 83 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA-------------TVVA-VARREDLLDAVADR 83 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------------EEEE-EECCHHHHHHHHHH
Confidence 4668888974 589999999987654 4554 46666666665443
No 203
>PRK12937 short chain dehydrogenase; Provisional
Probab=34.05 E-value=1.8e+02 Score=29.99 Aligned_cols=25 Identities=20% Similarity=0.107 Sum_probs=20.4
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCc
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHE 318 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~ 318 (856)
..+++|.|.+ ..|..++++|.+.+.
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~ 30 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGF 30 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 4679999964 589999999988655
No 204
>PRK08267 short chain dehydrogenase; Provisional
Probab=34.02 E-value=1.7e+02 Score=30.77 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=40.9
Q ss_pred CeEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH
Q 003021 295 DHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER 373 (856)
Q Consensus 295 ~HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r 373 (856)
.+++|.|.+. .|..++++|.+.+. .|++ .+++++.++++.....+ ....++..|.++.+.+++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~ 65 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-------------RVGA-YDINEAGLAALAAELGA--GNAWTGALDVTDRAAWDA 65 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-------------eEEE-EeCCHHHHHHHHHHhcC--CceEEEEecCCCHHHHHH
Confidence 3689999764 89999999987644 4554 46677667666543211 135566667666655554
Q ss_pred c
Q 003021 374 A 374 (856)
Q Consensus 374 A 374 (856)
+
T Consensus 66 ~ 66 (260)
T PRK08267 66 A 66 (260)
T ss_pred H
Confidence 3
No 205
>PRK06139 short chain dehydrogenase; Provisional
Probab=33.87 E-value=1.8e+02 Score=32.49 Aligned_cols=67 Identities=9% Similarity=0.138 Sum_probs=40.2
Q ss_pred CCCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHH
Q 003021 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSY 371 (856)
Q Consensus 293 ~~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L 371 (856)
...+++|.|.+ -.|..++++|.+.+. .|++ ..++++.++++.+.....-....++..|.++.+.+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-------------~Vvl-~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v 71 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-------------RLVL-AARDEEALQAVAEECRALGAEVLVVPTDVTDADQV 71 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-------------EEEE-EECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHH
Confidence 35688999986 589999999988654 4554 56777666665443211101233444555555544
Q ss_pred HH
Q 003021 372 ER 373 (856)
Q Consensus 372 ~r 373 (856)
++
T Consensus 72 ~~ 73 (330)
T PRK06139 72 KA 73 (330)
T ss_pred HH
Confidence 44
No 206
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=33.82 E-value=80 Score=31.84 Aligned_cols=68 Identities=10% Similarity=-0.006 Sum_probs=43.9
Q ss_pred eEEEEe-ccccHHHHHHHHhcccCCCceEEEEcCCC--chhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhcc
Q 003021 596 RILLLG-WRPDVVEMIEEYDNYLGPGSVLEILSDVP--LDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTI 668 (856)
Q Consensus 596 ~vLI~G-w~r~~~~li~eL~~~~~~gs~v~Ii~~~p--~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a~ 668 (856)
.+||.| -|..+..+++.|.+.. ...+.++...+ ..+..+.+.++ .-.+.+|.++..|.+|++.++++-
T Consensus 2 tylitGG~gglg~~la~~La~~~--~~~~il~~r~~~~~~~~~~~i~~l---~~~g~~v~~~~~Dv~d~~~v~~~~ 72 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERG--ARRLILLGRSGAPSAEAEAAIREL---ESAGARVEYVQCDVTDPEAVAAAL 72 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGSTTHHHHHHHH---HHTT-EEEEEE--TTSHHHHHHHH
T ss_pred EEEEECCccHHHHHHHHHHHHcC--CCEEEEeccCCCccHHHHHHHHHH---HhCCCceeeeccCccCHHHHHHHH
Confidence 467887 4567889999997643 55788888762 22333334332 123678999999999999999873
No 207
>PRK12829 short chain dehydrogenase; Provisional
Probab=33.82 E-value=1.8e+02 Score=30.38 Aligned_cols=78 Identities=10% Similarity=0.113 Sum_probs=45.5
Q ss_pred CCCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHH
Q 003021 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSY 371 (856)
Q Consensus 293 ~~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L 371 (856)
...+++|.|.+ ..|..++++|.+.++ .|++ ..++++..+.+.+... +. .+.++..+.++++.+
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~-------------~V~~-~~r~~~~~~~~~~~~~-~~-~~~~~~~D~~~~~~~ 73 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA-------------RVHV-CDVSEAALAATAARLP-GA-KVTATVADVADPAQV 73 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHHHh-cC-ceEEEEccCCCHHHH
Confidence 45789999975 589999999987654 4544 4666665555443321 11 234455566665554
Q ss_pred HHcC------ccccCeEEEec
Q 003021 372 ERAA------ANKARAIIILP 386 (856)
Q Consensus 372 ~rA~------v~~A~aVIIl~ 386 (856)
.++- ....+.||-.+
T Consensus 74 ~~~~~~~~~~~~~~d~vi~~a 94 (264)
T PRK12829 74 ERVFDTAVERFGGLDVLVNNA 94 (264)
T ss_pred HHHHHHHHHHhCCCCEEEECC
Confidence 4321 12467655443
No 208
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=33.78 E-value=2.7e+02 Score=30.23 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=20.6
Q ss_pred eEEEEcCCchHHHHHHHHHhcCc
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~ 318 (856)
+|.|+|.|..|..+...|.+.++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~ 24 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR 24 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC
Confidence 58999999999999999988755
No 209
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=33.75 E-value=1.8e+02 Score=36.39 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=20.6
Q ss_pred chhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003021 249 VERV-IGFILAIWGILFYSRLLSTMTEQFRN 278 (856)
Q Consensus 249 ~gRl-~~v~l~l~Gi~~fa~li~~it~~l~~ 278 (856)
.|.+ +++.++++-|+++=.||+++.+.+++
T Consensus 587 ~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~ 617 (743)
T TIGR00870 587 VGLLLFGAYNVIMYILLLNMLIAMMGNTYQL 617 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4655 44555666667777888988887764
No 210
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=33.58 E-value=2.1e+02 Score=30.60 Aligned_cols=69 Identities=12% Similarity=0.090 Sum_probs=43.7
Q ss_pred EEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHcC
Q 003021 297 IIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAA 375 (856)
Q Consensus 297 iII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA~ 375 (856)
|+|.|. |..|..++++|.+.++ .|.++.- +++..+ ..+..++.++-++.++|+++=
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g~-------------~V~~~~R-~~~~~~---------~~~~~~~~~d~~d~~~l~~a~ 58 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAASV-------------PFLVASR-SSSSSA---------GPNEKHVKFDWLDEDTWDNPF 58 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCCC-------------cEEEEeC-CCcccc---------CCCCccccccCCCHHHHHHHH
Confidence 567775 7899999999988655 3444433 322111 125556667777888887753
Q ss_pred -----ccc-cCeEEEecCC
Q 003021 376 -----ANK-ARAIIILPTK 388 (856)
Q Consensus 376 -----v~~-A~aVIIl~~~ 388 (856)
++. +++++.+++.
T Consensus 59 ~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 59 SSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred hcccCcCCceeEEEEeCCC
Confidence 244 7877765543
No 211
>PRK06940 short chain dehydrogenase; Provisional
Probab=33.50 E-value=1.7e+02 Score=31.37 Aligned_cols=40 Identities=18% Similarity=0.353 Sum_probs=27.7
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHH
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 348 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~ 348 (856)
+..+||.|.+..|..++++|. .+. .|++ .+++.+..+.+.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-------------~Vv~-~~r~~~~~~~~~ 41 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-------------KVLL-ADYNEENLEAAA 41 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-------------EEEE-EeCCHHHHHHHH
Confidence 457899999889999999994 333 4555 466655555443
No 212
>PRK12743 oxidoreductase; Provisional
Probab=33.48 E-value=2.1e+02 Score=30.10 Aligned_cols=63 Identities=13% Similarity=-0.066 Sum_probs=36.0
Q ss_pred eEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHH
Q 003021 296 HIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSY 371 (856)
Q Consensus 296 HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L 371 (856)
-++|.|.+ ..|..++++|.+.+. .|+++...+++..+.+.+.....-....++..+-++.+.+
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~-------------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 67 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGF-------------DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEG 67 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-------------EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence 47888876 489999999998655 4655545555555544333211111244455555554443
No 213
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=33.24 E-value=85 Score=30.99 Aligned_cols=75 Identities=23% Similarity=0.245 Sum_probs=43.1
Q ss_pred EEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhc--cccCCceEEEecCCCHHHHHHc
Q 003021 297 IIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIA--KDLNHIDILSKSLTLTKSYERA 374 (856)
Q Consensus 297 iII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~--~d~~~~~Vi~~~~~~~e~L~rA 374 (856)
|.|||.|.-|..++..|...++ .|.+ -.++++..+.+.+... ....+...- ....-..+|+++
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~-------------~V~l-~~~~~~~~~~i~~~~~n~~~~~~~~l~-~~i~~t~dl~~a 66 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGH-------------EVTL-WGRDEEQIEEINETRQNPKYLPGIKLP-ENIKATTDLEEA 66 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTE-------------EEEE-ETSCHHHHHHHHHHTSETTTSTTSBEE-TTEEEESSHHHH
T ss_pred EEEECcCHHHHHHHHHHHHcCC-------------EEEE-EeccHHHHHHHHHhCCCCCCCCCcccC-cccccccCHHHH
Confidence 7899999999999999988765 4554 5778888887766421 011111110 000012345443
Q ss_pred CccccCeEEEecC
Q 003021 375 AANKARAIIILPT 387 (856)
Q Consensus 375 ~v~~A~aVIIl~~ 387 (856)
++.|+.+++..+
T Consensus 67 -~~~ad~IiiavP 78 (157)
T PF01210_consen 67 -LEDADIIIIAVP 78 (157)
T ss_dssp -HTT-SEEEE-S-
T ss_pred -hCcccEEEeccc
Confidence 578896665554
No 214
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=33.19 E-value=2.1e+02 Score=30.17 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=19.8
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHhcCc
Q 003021 294 SDHIIVCGVNS-HLSFILKQLNKYHE 318 (856)
Q Consensus 294 ~~HiII~G~~~-~~~~li~eL~~~~~ 318 (856)
..+++|.|.+. .|..++++|.+.+.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~ 32 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA 32 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 45788888665 89999999988654
No 215
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=33.10 E-value=2.3e+02 Score=34.49 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=50.4
Q ss_pred CCCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhcc------c---cCCceEEE
Q 003021 293 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAK------D---LNHIDILS 362 (856)
Q Consensus 293 ~~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~------d---~~~~~Vi~ 362 (856)
+...++|.|. |..|..++++|.+.++ .|+++ .++.+..+.+.+.+.. . ..++.++.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~-------------~Vval-~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~ 144 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF-------------RVRAG-VRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVE 144 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------------eEEEE-eCCHHHHHHHHHHhhhhccccccccccCceEEEE
Confidence 4557888986 6799999999988655 45554 5555555544332100 0 01356777
Q ss_pred ecCCCHHHHHHcCccccCeEEEecC
Q 003021 363 KSLTLTKSYERAAANKARAIIILPT 387 (856)
Q Consensus 363 ~~~~~~e~L~rA~v~~A~aVIIl~~ 387 (856)
++..+.++++++ +..++.||..+.
T Consensus 145 gDLtD~esI~~a-LggiDiVVn~AG 168 (576)
T PLN03209 145 CDLEKPDQIGPA-LGNASVVICCIG 168 (576)
T ss_pred ecCCCHHHHHHH-hcCCCEEEEccc
Confidence 888887777663 567887665543
No 216
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=33.10 E-value=96 Score=31.95 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=44.0
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|.+ ..+..+++.|.+ .|..|.++...+.+.......++ .-.+.++.++.+|.++.+.+.++
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~---~G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 73 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAA---QGANVVINYASSEAGAEALVAEI---GALGGKALAVQGDVSDAESVERA 73 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCchhHHHHHHHHH---HhcCCceEEEEcCCCCHHHHHHH
Confidence 3678999975 578899999964 47778777654332111111111 11245678899999999988775
No 217
>PRK06182 short chain dehydrogenase; Validated
Probab=33.08 E-value=1.7e+02 Score=31.03 Aligned_cols=73 Identities=15% Similarity=0.096 Sum_probs=46.2
Q ss_pred CCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|.|. |..|..++++|.+.++ .|++ ..++.+.++++.. .+..++..|-++.+.++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~-------------~V~~-~~r~~~~l~~~~~------~~~~~~~~Dv~~~~~~~ 62 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY-------------TVYG-AARRVDKMEDLAS------LGVHPLSLDVTDEASIK 62 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHh------CCCeEEEeeCCCHHHHH
Confidence 357899996 4699999999987654 4554 4666666655432 15667777777766655
Q ss_pred HcCc------cccCeEEEec
Q 003021 373 RAAA------NKARAIIILP 386 (856)
Q Consensus 373 rA~v------~~A~aVIIl~ 386 (856)
++-- ...+.+|-.+
T Consensus 63 ~~~~~~~~~~~~id~li~~a 82 (273)
T PRK06182 63 AAVDTIIAEEGRIDVLVNNA 82 (273)
T ss_pred HHHHHHHHhcCCCCEEEECC
Confidence 4421 2457555443
No 218
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=32.72 E-value=1.8e+02 Score=30.05 Aligned_cols=22 Identities=14% Similarity=-0.099 Sum_probs=17.9
Q ss_pred EEEEcCC-chHHHHHHHHHhcCc
Q 003021 297 IIVCGVN-SHLSFILKQLNKYHE 318 (856)
Q Consensus 297 iII~G~~-~~~~~li~eL~~~~~ 318 (856)
++|.|.+ ..|..++++|.+.+.
T Consensus 4 ~lItGa~g~iG~~l~~~l~~~g~ 26 (247)
T PRK09730 4 ALVTGGSRGIGRATALLLAQEGY 26 (247)
T ss_pred EEEeCCCchHHHHHHHHHHHCCC
Confidence 6888875 599999999987654
No 219
>PRK05993 short chain dehydrogenase; Provisional
Probab=32.53 E-value=62 Score=34.72 Aligned_cols=61 Identities=11% Similarity=-0.063 Sum_probs=42.6
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|. |..|..+++.|.+ .|..|.++...+ +..+.+. +..++++.+|.+|.+.++++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~---~G~~Vi~~~r~~--~~~~~l~--------~~~~~~~~~Dl~d~~~~~~~ 65 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQS---DGWRVFATCRKE--EDVAALE--------AEGLEAFQLDYAEPESIAAL 65 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEECCH--HHHHHHH--------HCCceEEEccCCCHHHHHHH
Confidence 357999998 5679999999964 577888877632 2222221 22356799999999887765
No 220
>PRK06914 short chain dehydrogenase; Provisional
Probab=32.50 E-value=1e+02 Score=32.96 Aligned_cols=66 Identities=6% Similarity=-0.056 Sum_probs=43.0
Q ss_pred CeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhc-ccCCCCccCceEEEEECCCCCHHHHHh
Q 003021 595 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASN-AIGHGKLKNVQVFHKIGNPLNFETLKD 666 (856)
Q Consensus 595 ~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~-~~~~~~l~~~~V~~i~GD~td~~~L~~ 666 (856)
+++||.|.+ ..+..+++.|.+ .|..|.++...+. ..+.+. +... .-.+.+++++.+|.+|.+.+++
T Consensus 4 k~~lItGasg~iG~~la~~l~~---~G~~V~~~~r~~~--~~~~~~~~~~~-~~~~~~~~~~~~D~~d~~~~~~ 71 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAK---KGYLVIATMRNPE--KQENLLSQATQ-LNLQQNIKVQQLDVTDQNSIHN 71 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHh---CCCEEEEEeCCHH--HHHHHHHHHHh-cCCCCceeEEecCCCCHHHHHH
Confidence 578999975 578999999963 5778888875432 211111 1100 0113467889999999998876
No 221
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=32.33 E-value=1.1e+02 Score=32.33 Aligned_cols=65 Identities=6% Similarity=0.009 Sum_probs=44.3
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.+||.|.+. .+..+++.|. ..|..|.++...+.++..+.+.+ .+.+++++.+|.++++..+++
T Consensus 8 ~k~~lItGas~gIG~aia~~l~---~~G~~vv~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~ 73 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLA---KAGADIVGVGVAEAPETQAQVEA------LGRKFHFITADLIQQKDIDSI 73 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHH---HCCCEEEEecCchHHHHHHHHHH------cCCeEEEEEeCCCCHHHHHHH
Confidence 46789999875 6889999996 46778887765322221222211 134677899999999988775
No 222
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=32.22 E-value=63 Score=34.78 Aligned_cols=56 Identities=16% Similarity=0.038 Sum_probs=40.1
Q ss_pred eEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 596 RILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 596 ~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+|+|.|. |..|..++++|.+ .|.+|..+...+. +. ...+ +..+.||.+|.+.|.++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~---~g~~V~~~~R~~~--~~---------~~~~--~~~~~~d~~d~~~l~~a 57 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQA---ASVPFLVASRSSS--SS---------AGPN--EKHVKFDWLDEDTWDNP 57 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHh---CCCcEEEEeCCCc--cc---------cCCC--CccccccCCCHHHHHHH
Confidence 3788888 7899999999964 4677888876432 11 1123 34578999999999886
No 223
>PRK05867 short chain dehydrogenase; Provisional
Probab=32.14 E-value=2e+02 Score=30.11 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=30.3
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHh
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN 350 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~ 350 (856)
...++|.|.+ ..|..++++|.+.+. .|++ .+++.+..+.+.+.
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~ 52 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA-------------QVAI-AARHLDALEKLADE 52 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEE-EcCCHHHHHHHHHH
Confidence 4568899975 589999999987654 4554 56776666665543
No 224
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=32.11 E-value=2e+02 Score=30.13 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=38.0
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
..+++|.|.+ ..|..++++|.+.+. .|++ .+++.+..+.+............++..+.++++.++
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~ 77 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA-------------RVVL-SARKAEELEEAAAHLEALGIDALWIAADVADEADIE 77 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-------------EEEE-EeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHH
Confidence 4679999964 589999999987544 4544 566665555544322111112344555656655553
No 225
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=32.05 E-value=1.7e+02 Score=33.36 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=44.8
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER 373 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r 373 (856)
...++|+|.|..|...++.+...+. .|++ .|.+++..+.+...+ +..+ .....+.+.|.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa-------------~V~v-~d~~~~~~~~l~~~~-----g~~v-~~~~~~~~~l~~ 226 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGA-------------TVTI-LDINIDRLRQLDAEF-----GGRI-HTRYSNAYEIED 226 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCC-------------eEEE-EECCHHHHHHHHHhc-----Ccee-EeccCCHHHHHH
Confidence 3449999999999999999987543 4444 577776666655432 2222 222344566766
Q ss_pred cCccccCeEEE
Q 003021 374 AAANKARAIII 384 (856)
Q Consensus 374 A~v~~A~aVII 384 (856)
+ +.+||.+|.
T Consensus 227 ~-l~~aDvVI~ 236 (370)
T TIGR00518 227 A-VKRADLLIG 236 (370)
T ss_pred H-HccCCEEEE
Confidence 5 678995443
No 226
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=32.02 E-value=89 Score=32.61 Aligned_cols=66 Identities=12% Similarity=0.020 Sum_probs=44.4
Q ss_pred CeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
++++|.|.+ ..+..+++.|.+ .|..|.++...+... .+...++ .-.+.+++.+.+|-++.+.++++
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~---~g~~v~~~~r~~~~~-~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 71 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAK---EGAKVVIADLNDEAA-AAAAEAL---QKAGGKAIGVAMDVTDEEAINAG 71 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHH---CCCeEEEEeCCHHHH-HHHHHHH---HhcCCcEEEEEcCCCCHHHHHHH
Confidence 689999974 578999999964 577888887643211 1111111 01234677899999999998775
No 227
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.91 E-value=2.3e+02 Score=29.57 Aligned_cols=24 Identities=17% Similarity=-0.089 Sum_probs=18.5
Q ss_pred CeEEEEcCC-chHHHHHHHHHhcCc
Q 003021 295 DHIIVCGVN-SHLSFILKQLNKYHE 318 (856)
Q Consensus 295 ~HiII~G~~-~~~~~li~eL~~~~~ 318 (856)
.-++|.|.+ -.|..++++|.+.+.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~ 27 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF 27 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC
Confidence 357888865 489999999987654
No 228
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=31.90 E-value=1.2e+02 Score=25.23 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=30.8
Q ss_pred CCCHHHHHccCC-ceEEEEEEECCEEEECCC---CCceecCCCEEEEEec
Q 003021 482 GIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPN---DDETLQPTDKILFIAP 527 (856)
Q Consensus 482 G~tf~el~~~~~-~aivIGI~r~G~~~lnP~---~d~vI~~gD~LivIa~ 527 (856)
+.|+.++...+. +.-.+++..|+++ .|. +++.|++||++-++..
T Consensus 14 ~~tl~~Ll~~l~~~~~~vavavN~~i--v~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 14 ATTLALLLAELDYEGNWLATAVNGEL--VHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred cCcHHHHHHHcCCCCCeEEEEECCEE--cCHHHcCccccCCCCEEEEEEe
Confidence 458888766543 3344566668984 454 4889999999988754
No 229
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=31.83 E-value=2.1e+02 Score=30.25 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=29.2
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 294 ~~HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
...++|.|.+. .|..++++|.+.+. .|+++...+++..+.+.+
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~-------------~v~~~~~~~~~~~~~~~~ 51 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGV-------------NIAFTYNSNVEEANKIAE 51 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEEcCCCHHHHHHHHH
Confidence 45778888765 89999999998654 455544455555555433
No 230
>PRK08017 oxidoreductase; Provisional
Probab=31.78 E-value=61 Score=33.94 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=41.6
Q ss_pred CeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+.++|.|. |..|..+++.|.+ .|..+.++...+ ++.+.+. ...++++.+|.++.+.++++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~---~g~~v~~~~r~~--~~~~~~~--------~~~~~~~~~D~~~~~~~~~~ 63 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKR---RGYRVLAACRKP--DDVARMN--------SLGFTGILLDLDDPESVERA 63 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHhHHHH--------hCCCeEEEeecCCHHHHHHH
Confidence 56999999 7899999999964 466777776532 3222211 12356789999999887663
No 231
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=31.72 E-value=2.2e+02 Score=31.09 Aligned_cols=60 Identities=13% Similarity=-0.011 Sum_probs=39.1
Q ss_pred EEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEE-EEECCCCCHHHHHhc
Q 003021 599 LLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVF-HKIGNPLNFETLKDT 667 (856)
Q Consensus 599 I~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~-~i~GD~td~~~L~~a 667 (856)
.=|.|-.|.+++++|.+... -..|.+++..+...... .+....+. ++.||-+|++.|.++
T Consensus 3 TGgsGflG~~iv~~Ll~~g~-~~~Vr~~d~~~~~~~~~--------~~~~~~~~~~~~~Di~d~~~l~~a 63 (280)
T PF01073_consen 3 TGGSGFLGSHIVRQLLERGY-IYEVRVLDRSPPPKFLK--------DLQKSGVKEYIQGDITDPESLEEA 63 (280)
T ss_pred EcCCcHHHHHHHHHHHHCCC-ceEEEEcccccccccch--------hhhcccceeEEEeccccHHHHHHH
Confidence 34667789999999975321 26788777643322211 12222233 899999999999997
No 232
>PRK05876 short chain dehydrogenase; Provisional
Probab=31.63 E-value=2.1e+02 Score=30.69 Aligned_cols=42 Identities=10% Similarity=0.150 Sum_probs=28.9
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
...++|.|.+ ..|..++++|.+.+. .|++ .+.+++.+++..+
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~-------------~Vv~-~~r~~~~l~~~~~ 48 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA-------------RVVL-GDVDKPGLRQAVN 48 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHH
Confidence 4468888865 589999999987654 4544 5666666665443
No 233
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=31.15 E-value=1.6e+02 Score=29.56 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=23.7
Q ss_pred eEEEEc-CCchHHHHHHHHHhcCcccccccccccCcceEEEEeCC
Q 003021 296 HIIVCG-VNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL 339 (856)
Q Consensus 296 HiII~G-~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~ 339 (856)
.++|.| .|..+..+++.|.+... ..++++...
T Consensus 2 tylitGG~gglg~~la~~La~~~~------------~~~il~~r~ 34 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGA------------RRLILLGRS 34 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-------------SEEEEEESS
T ss_pred EEEEECCccHHHHHHHHHHHHcCC------------CEEEEeccC
Confidence 467887 67799999999988654 367777665
No 234
>PRK05650 short chain dehydrogenase; Provisional
Probab=30.99 E-value=1.9e+02 Score=30.59 Aligned_cols=63 Identities=8% Similarity=-0.010 Sum_probs=35.6
Q ss_pred eEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 296 HIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 296 HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
+++|.|.+ ..|..++++|.+.+. .|++ .+++.+..+.+...+...-....++..+.++.+.+.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-------------~V~~-~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~ 65 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-------------RLAL-ADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLT 65 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHH
Confidence 68888865 689999999987644 4544 466665555544332111112333444544444443
No 235
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.96 E-value=1.2e+02 Score=31.92 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=44.3
Q ss_pred CCeEEEEecc---ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR---PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~---r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|-|.+ ..+..+++.|. ..|..|.+.... ++..+.+.+ +...+++++..|.+|.+..+++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la---~~G~~Vi~~~r~--~~~~~~~~~-----~~~~~~~~~~~Dl~~~~~v~~~ 73 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIK---DQGATVIYTYQN--DRMKKSLQK-----LVDEEDLLVECDVASDESIERA 73 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHH---HCCCEEEEecCc--hHHHHHHHh-----hccCceeEEeCCCCCHHHHHHH
Confidence 4689999986 68999999996 457778877642 222222222 2223567899999999988765
No 236
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=30.96 E-value=1.4e+02 Score=32.86 Aligned_cols=46 Identities=15% Similarity=0.285 Sum_probs=36.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhh
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENI 351 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~ 351 (856)
...+++|+|.|-.+..++-.|.+.+. .+|+| .++..+..+++.+.+
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~------------~~i~V-~NRt~~ra~~La~~~ 170 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGA------------KRITV-VNRTRERAEELADLF 170 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC------------CEEEE-EeCCHHHHHHHHHHh
Confidence 46789999999999999999998765 36777 477777777777654
No 237
>PRK12828 short chain dehydrogenase; Provisional
Probab=30.93 E-value=88 Score=32.12 Aligned_cols=65 Identities=3% Similarity=-0.113 Sum_probs=42.6
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|. |..+..+++.|.+ .|..|.+++..+... .+.+.+ +....+..+.+|.+|.+.++++
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~---~G~~v~~~~r~~~~~-~~~~~~-----~~~~~~~~~~~D~~~~~~~~~~ 72 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAA---RGARVALIGRGAAPL-SQTLPG-----VPADALRIGGIDLVDPQAARRA 72 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHH---CCCeEEEEeCChHhH-HHHHHH-----HhhcCceEEEeecCCHHHHHHH
Confidence 467889887 5679999999963 477788887643221 111111 2223345688999999988765
No 238
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.68 E-value=1.9e+02 Score=33.94 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCc
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~ 318 (856)
...+++|+|.|..|..+++.|.+.+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~ 40 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA 40 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 35689999999999999888876544
No 239
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=30.67 E-value=86 Score=30.16 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=33.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcc
Q 003021 593 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNA 640 (856)
Q Consensus 593 ~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~ 640 (856)
..++++|+|-|..++.++..|... .-.+|+|++. ..+|.+.+.+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~--g~~~i~i~nR--t~~ra~~l~~ 54 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL--GAKEITIVNR--TPERAEALAE 54 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT--TSSEEEEEES--SHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEEEC--CHHHHHHHHH
Confidence 468999999999999999999764 2235999998 4456555544
No 240
>PRK07890 short chain dehydrogenase; Provisional
Probab=30.55 E-value=2.3e+02 Score=29.56 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=37.1
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|.|.+ ..|..++++|.+.+. .|++ .+++++..+.+.......-.....+..+.++.+.++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 70 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA-------------DVVL-AARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCA 70 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC-------------EEEE-EeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHH
Confidence 4568889975 599999999987654 4554 466665555544332111012334444555544443
No 241
>PRK09134 short chain dehydrogenase; Provisional
Probab=30.50 E-value=2.3e+02 Score=29.74 Aligned_cols=67 Identities=15% Similarity=0.046 Sum_probs=36.7
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|.|.+. .|..++++|.+.+. .++++...+.+..+.+............++..|.++.+.+.
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 75 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGF-------------DVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVR 75 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------------EEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence 44688998764 89999999987654 45554444444444433322111112334445555554444
Q ss_pred H
Q 003021 373 R 373 (856)
Q Consensus 373 r 373 (856)
+
T Consensus 76 ~ 76 (258)
T PRK09134 76 A 76 (258)
T ss_pred H
Confidence 3
No 242
>PRK08643 acetoin reductase; Validated
Probab=30.36 E-value=2.2e+02 Score=29.81 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=27.4
Q ss_pred CeEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 295 DHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 295 ~HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
..++|.|.+. .|..+++.|.+.+. .|++ .+++.+..+.+..
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~-------------~v~~-~~r~~~~~~~~~~ 44 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF-------------KVAI-VDYNEETAQAAAD 44 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHH
Confidence 4678888764 89999999987654 4555 4565555554433
No 243
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=30.26 E-value=1.9e+02 Score=33.69 Aligned_cols=72 Identities=14% Similarity=0.285 Sum_probs=46.1
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER 373 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r 373 (856)
..+++|+|.|..+..+++.|...+. ..|.| +.+..+..+.+.+.+ .+.. ....++|..
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~------------~~I~V-~nRt~~ra~~La~~~----~~~~-----~~~~~~l~~ 238 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAP------------KQIML-ANRTIEKAQKITSAF----RNAS-----AHYLSELPQ 238 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCC------------CEEEE-ECCCHHHHHHHHHHh----cCCe-----EecHHHHHH
Confidence 4579999999999999999987653 24665 577666667766643 1111 112345533
Q ss_pred cCccccCeEEEecCCC
Q 003021 374 AAANKARAIIILPTKG 389 (856)
Q Consensus 374 A~v~~A~aVIIl~~~~ 389 (856)
+ +.+|| +||.++..
T Consensus 239 ~-l~~aD-iVI~aT~a 252 (414)
T PRK13940 239 L-IKKAD-IIIAAVNV 252 (414)
T ss_pred H-hccCC-EEEECcCC
Confidence 3 67799 45555544
No 244
>PRK07109 short chain dehydrogenase; Provisional
Probab=30.18 E-value=2.3e+02 Score=31.50 Aligned_cols=68 Identities=9% Similarity=0.121 Sum_probs=39.8
Q ss_pred CCCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHH
Q 003021 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSY 371 (856)
Q Consensus 293 ~~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L 371 (856)
....++|.|.+ -.|..++++|.+.+. .|++ ..++++.++++.++....-....++..|.++.+.+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-------------~Vvl-~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v 72 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-------------KVVL-LARGEEGLEALAAEIRAAGGEALAVVADVADAEAV 72 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------------EEEE-EECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHH
Confidence 34578899975 589999999987654 4555 45666666655443211101233444555555555
Q ss_pred HHc
Q 003021 372 ERA 374 (856)
Q Consensus 372 ~rA 374 (856)
+++
T Consensus 73 ~~~ 75 (334)
T PRK07109 73 QAA 75 (334)
T ss_pred HHH
Confidence 443
No 245
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.17 E-value=1.3e+02 Score=32.00 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=44.3
Q ss_pred CCeEEEEecc---ccHHHHHHHHhcccCCCceEEEEcCCC-chhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR---PDVVEMIEEYDNYLGPGSVLEILSDVP-LDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~---r~~~~li~eL~~~~~~gs~v~Ii~~~p-~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|.+ ..+..++++|.+ .|..|.+..... .+++-+.+.+ .++..++.++..|.+|++..+++
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~---~G~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHN---AGAKLVFTYAGERLEKEVRELAD----TLEGQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHH---CCCEEEEecCcccchHHHHHHHH----HcCCCceEEEecCCCCHHHHHHH
Confidence 4689999984 789999999964 577787775321 1122122211 12234577899999999988765
No 246
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=30.12 E-value=1.2e+02 Score=31.57 Aligned_cols=67 Identities=10% Similarity=-0.000 Sum_probs=42.9
Q ss_pred CeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+.++|.|.+ ..+..+++.|.+ .|..+++..........+.+.++ .-.+.++..+.+|.+|.+.++++
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~---~G~~vv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 71 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHK---DGFKVVAGCGPNSPRRVKWLEDQ---KALGFDFIASEGNVGDWDSTKAA 71 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHH---cCCEEEEEcCCChHHHHHHHHHH---HhcCCcEEEEEcCCCCHHHHHHH
Confidence 567888875 578999999964 46667765432222222222221 11244567789999999988775
No 247
>PRK07440 hypothetical protein; Provisional
Probab=30.10 E-value=1.3e+02 Score=25.79 Aligned_cols=44 Identities=18% Similarity=0.371 Sum_probs=32.2
Q ss_pred CCCCHHHHHccCC-ceEEEEEEECCEEEECCC---CCceecCCCEEEEEe
Q 003021 481 AGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPN---DDETLQPTDKILFIA 526 (856)
Q Consensus 481 ~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~---~d~vI~~gD~LivIa 526 (856)
.|.|+.|+...+. ..--+++..||++ .|. +++.|++||++-++.
T Consensus 18 ~~~tl~~lL~~l~~~~~~vav~~N~~i--v~r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 18 SGTSLPDLLQQLGFNPRLVAVEYNGEI--LHRQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred CCCCHHHHHHHcCCCCCeEEEEECCEE--eCHHHcCceecCCCCEEEEEE
Confidence 4789999876654 4556677779985 443 567999999997764
No 248
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=30.10 E-value=98 Score=34.31 Aligned_cols=63 Identities=14% Similarity=0.261 Sum_probs=41.1
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCCh-hHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR-KQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~-~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
..-+||||||++|..-...|...+. .|++.|.|+ -.++...+ |++|+. |+
T Consensus 214 GKv~Vv~GYGdVGKgCaqaLkg~g~--------------~VivTEiDPI~ALQAaMe-------G~~V~t--------m~ 264 (434)
T KOG1370|consen 214 GKVAVVCGYGDVGKGCAQALKGFGA--------------RVIVTEIDPICALQAAME-------GYEVTT--------LE 264 (434)
T ss_pred ccEEEEeccCccchhHHHHHhhcCc--------------EEEEeccCchHHHHHHhh-------ccEeee--------HH
Confidence 4456899999999999998876543 556677654 44444433 677664 33
Q ss_pred HcCccccCeEEEecC
Q 003021 373 RAAANKARAIIILPT 387 (856)
Q Consensus 373 rA~v~~A~aVIIl~~ 387 (856)
+| ++.++ |+|.++
T Consensus 265 ea-~~e~d-ifVTtT 277 (434)
T KOG1370|consen 265 EA-IREVD-IFVTTT 277 (434)
T ss_pred Hh-hhcCC-EEEEcc
Confidence 33 56677 555544
No 249
>PRK06179 short chain dehydrogenase; Provisional
Probab=30.05 E-value=89 Score=33.13 Aligned_cols=58 Identities=14% Similarity=-0.032 Sum_probs=41.3
Q ss_pred CeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+.++|.|.+ ..|..++++|.+ .|..|.++...+ +... .. ..++++.+|.+|.+.++++
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~---~g~~V~~~~r~~--~~~~--------~~--~~~~~~~~D~~d~~~~~~~ 63 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLAR---AGYRVFGTSRNP--ARAA--------PI--PGVELLELDVTDDASVQAA 63 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHH---CCCEEEEEeCCh--hhcc--------cc--CCCeeEEeecCCHHHHHHH
Confidence 578898876 468899999964 577888877632 1110 12 2356799999999998876
No 250
>PLN02650 dihydroflavonol-4-reductase
Probab=30.05 E-value=3.7e+02 Score=29.82 Aligned_cols=67 Identities=10% Similarity=0.001 Sum_probs=42.9
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcc--CceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLK--NVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~--~~~V~~i~GD~td~~~L~~a 667 (856)
.++|||.|. |-.|..++++|.+ .|.+|.++...+. ....+... ...+ +.++.++.||.++.+.+.++
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~---~G~~V~~~~r~~~--~~~~~~~~--~~~~~~~~~~~~v~~Dl~d~~~~~~~ 74 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLE---RGYTVRATVRDPA--NVKKVKHL--LDLPGATTRLTLWKADLAVEGSFDDA 74 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHH---CCCEEEEEEcCcc--hhHHHHHH--HhccCCCCceEEEEecCCChhhHHHH
Confidence 568999998 5789999999964 4777776654221 11111110 0011 12577899999999988875
No 251
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.83 E-value=2.3e+02 Score=29.37 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=39.7
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|.|.+ ..|..++++|.+.+. .|++ ..++++..+.+...+.. .....++..+..+.+.++
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~ 69 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA-------------RVVV-TDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVE 69 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHH
Confidence 3468888864 699999999987654 4554 46666555554443211 113445556666666555
Q ss_pred Hc
Q 003021 373 RA 374 (856)
Q Consensus 373 rA 374 (856)
++
T Consensus 70 ~~ 71 (251)
T PRK07231 70 AA 71 (251)
T ss_pred HH
Confidence 43
No 252
>PRK08219 short chain dehydrogenase; Provisional
Probab=29.78 E-value=2.4e+02 Score=28.68 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=46.1
Q ss_pred CeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH
Q 003021 295 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER 373 (856)
Q Consensus 295 ~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r 373 (856)
.+++|.|. |..|..++++|.+. + .|+++ +++.+..+.+... ..+..++.++.++.+.+++
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-~-------------~V~~~-~r~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~ 64 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-H-------------TLLLG-GRPAERLDELAAE----LPGATPFPVDLTDPEAIAA 64 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-C-------------CEEEE-eCCHHHHHHHHHH----hccceEEecCCCCHHHHHH
Confidence 46888886 46899999999876 4 35554 5555555544332 1256677777777777665
Q ss_pred cCc--cccCeEEEecC
Q 003021 374 AAA--NKARAIIILPT 387 (856)
Q Consensus 374 A~v--~~A~aVIIl~~ 387 (856)
+-- ...+.+|-.+.
T Consensus 65 ~~~~~~~id~vi~~ag 80 (227)
T PRK08219 65 AVEQLGRLDVLVHNAG 80 (227)
T ss_pred HHHhcCCCCEEEECCC
Confidence 432 25676655443
No 253
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.77 E-value=2.7e+02 Score=32.60 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.4
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCc
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~ 318 (856)
..+|.|+|+|..|..+++-|...+.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~ 38 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGA 38 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCC
Confidence 4579999999999999998887654
No 254
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=29.64 E-value=2.3e+02 Score=29.58 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=29.2
Q ss_pred CCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 294 ~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
..+++|.|. +..|..++++|.+.+. .|++ .+++++..+.+.+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~-------------~V~~-~~r~~~~~~~~~~ 52 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA-------------EVIL-NGRDPAKLAAAAE 52 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC-------------EEEE-EeCCHHHHHHHHH
Confidence 467889996 4689999999987654 4554 4666655555443
No 255
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=29.63 E-value=2.1e+02 Score=29.71 Aligned_cols=64 Identities=14% Similarity=0.033 Sum_probs=35.5
Q ss_pred eEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH
Q 003021 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER 373 (856)
Q Consensus 296 HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r 373 (856)
.++|.|. +..|..++++|.+.+. .++++ .++.+..+++.+.....-....++..+-++++.+++
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~ 66 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF-------------AVAVA-DLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFS 66 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence 5788886 4689999999987654 45554 555544444433221111123344445555554443
No 256
>PRK06138 short chain dehydrogenase; Provisional
Probab=29.54 E-value=1.3e+02 Score=31.29 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=44.7
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+ ..+..++++|.+ .|..+.++...+ +...+...+. . .+.++.++.+|.+|.+.++++
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~---~G~~v~~~~r~~-~~~~~~~~~~---~-~~~~~~~~~~D~~~~~~~~~~ 71 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAR---EGARVVVADRDA-EAAERVAAAI---A-AGGRAFARQGDVGSAEAVEAL 71 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHH---CCCeEEEecCCH-HHHHHHHHHH---h-cCCeEEEEEcCCCCHHHHHHH
Confidence 4688999986 578999999964 577788887532 1111122211 1 245578899999999998875
No 257
>PRK05884 short chain dehydrogenase; Provisional
Probab=29.53 E-value=97 Score=32.16 Aligned_cols=60 Identities=12% Similarity=0.170 Sum_probs=40.7
Q ss_pred eEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 596 RILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 596 ~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+++|.|.+ ..+..+++.|. ..|..|.+++.. +++.+.+.+ ...++++.+|.++.+.++++
T Consensus 2 ~vlItGas~giG~~ia~~l~---~~g~~v~~~~r~--~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~ 62 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFR---NDGHKVTLVGAR--RDDLEVAAK-------ELDVDAIVCDNTDPASLEEA 62 (223)
T ss_pred eEEEEeCCchHHHHHHHHHH---HCCCEEEEEeCC--HHHHHHHHH-------hccCcEEecCCCCHHHHHHH
Confidence 47888874 57999999996 357778887753 233222211 11345689999999988875
No 258
>PRK06114 short chain dehydrogenase; Provisional
Probab=29.44 E-value=2.5e+02 Score=29.38 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=19.3
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCc
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHE 318 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~ 318 (856)
...++|.|.+ ..|..++++|.+.+.
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~ 33 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGA 33 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 3467888866 489999999988654
No 259
>PRK09414 glutamate dehydrogenase; Provisional
Probab=29.36 E-value=2e+02 Score=33.74 Aligned_cols=34 Identities=15% Similarity=0.391 Sum_probs=27.5
Q ss_pred cCCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeC
Q 003021 292 LESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSD 338 (856)
Q Consensus 292 ~~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d 338 (856)
...-+++|.|+|.++..+++.|.+.+. .||.++|
T Consensus 230 l~g~rVaIqGfGnVG~~~A~~L~~~Ga-------------kVVavsD 263 (445)
T PRK09414 230 FEGKRVVVSGSGNVAIYAIEKAQQLGA-------------KVVTCSD 263 (445)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-------------EEEEEEc
Confidence 346689999999999999999987544 5676677
No 260
>PRK07831 short chain dehydrogenase; Provisional
Probab=29.35 E-value=1.1e+02 Score=32.28 Aligned_cols=69 Identities=7% Similarity=-0.076 Sum_probs=43.5
Q ss_pred CCeEEEEec-c-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-R-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|. | ..+..+++.|.+ .|..|.+.+..+. ...+...++. ..+...++.++.+|.++.+.++++
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~---~G~~V~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~ 87 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALE---EGARVVISDIHER-RLGETADELA-AELGLGRVEAVVCDVTSEAQVDAL 87 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHH---cCCEEEEEeCCHH-HHHHHHHHHH-HhcCCceEEEEEccCCCHHHHHHH
Confidence 478999998 4 599999999964 5667777765321 1111111110 012234577899999999887764
No 261
>PRK06182 short chain dehydrogenase; Validated
Probab=29.27 E-value=73 Score=33.98 Aligned_cols=61 Identities=11% Similarity=-0.015 Sum_probs=42.4
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|. |..|..++++|.+ .|..|.++...+ ++.+.+. ...++++.+|.+|.+.++++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~---~G~~V~~~~r~~--~~l~~~~--------~~~~~~~~~Dv~~~~~~~~~ 64 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAA---QGYTVYGAARRV--DKMEDLA--------SLGVHPLSLDVTDEASIKAA 64 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHH--------hCCCeEEEeeCCCHHHHHHH
Confidence 367899997 4679999999963 577888877632 2222211 12356799999999988765
No 262
>PRK09135 pteridine reductase; Provisional
Probab=29.27 E-value=1.2e+02 Score=31.39 Aligned_cols=69 Identities=13% Similarity=0.032 Sum_probs=44.2
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+++||.|.+ ..|..+++.|.+ .|..|.++.....+ ..+.+... ........++++.+|.+|.+.+.++
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~---~g~~v~~~~r~~~~-~~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~ 75 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHA---AGYRVAIHYHRSAA-EADALAAE-LNALRPGSAAALQADLLDPDALPEL 75 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEcCCCHH-HHHHHHHH-HHhhcCCceEEEEcCCCCHHHHHHH
Confidence 3689999986 479999999964 57788888753221 11111110 0011123467899999999988765
No 263
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=29.18 E-value=1.1e+02 Score=32.42 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=44.2
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhh-cccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS-NAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l-~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|.++ .|..++++|.+ .|..|.+.... .+++.+.+ .++. ...+.+++++..|.+|.+.++++
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~---~G~~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~ 77 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQ---SGVNIAFTYNS-NVEEANKIAEDLE--QKYGIKAKAYPLNILEPETYKEL 77 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEcCC-CHHHHHHHHHHHH--HhcCCceEEEEcCCCCHHHHHHH
Confidence 46889999875 69999999964 57777776542 22222211 1110 11245678899999999888765
No 264
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=29.18 E-value=1.8e+02 Score=30.72 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=45.1
Q ss_pred CCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCC-HHHH
Q 003021 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTL-TKSY 371 (856)
Q Consensus 294 ~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~-~e~L 371 (856)
...++|+|. |..|..++++|...++ .|+.+. ++++..+.... +..+..++.++..+ .+.+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~-------------~V~~~~-R~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~l 78 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGF-------------AVKAGV-RDVDKAKTSLP----QDPSLQIVRADVTEGSDKL 78 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCC-------------EEEEEe-cCHHHHHHhcc----cCCceEEEEeeCCCCHHHH
Confidence 345888995 7899999999987654 455443 33333332211 11256778888665 4556
Q ss_pred HHcCccccCeEEEec
Q 003021 372 ERAAANKARAIIILP 386 (856)
Q Consensus 372 ~rA~v~~A~aVIIl~ 386 (856)
.++-...++.||..+
T Consensus 79 ~~~~~~~~d~vi~~~ 93 (251)
T PLN00141 79 VEAIGDDSDAVICAT 93 (251)
T ss_pred HHHhhcCCCEEEECC
Confidence 544224688766544
No 265
>COG1584 Predicted membrane protein [Function unknown]
Probab=29.04 E-value=1.1e+02 Score=31.65 Aligned_cols=47 Identities=17% Similarity=0.430 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhcc---cc-ccccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 003021 226 EDCLWEAWACLISS---ST-HLKQRTRVERVIGFILAIWGILFYSRLLSTM 272 (856)
Q Consensus 226 ~dalw~~~~~vt~s---t~-g~gd~T~~gRl~~v~l~l~Gi~~fa~li~~i 272 (856)
.-+||++|..+... +. ++-+.++.+..++..++++|++.|..+++.+
T Consensus 87 yG~FW~s~a~~~~~~~~g~~~~~~~~~~~~aig~yL~~WgiFT~~M~~~Tl 137 (207)
T COG1584 87 YGLFWLSLALILLMPKLGILGYLDPAPLANALGWYLILWGIFTLLMFIGTL 137 (207)
T ss_pred ccHHHHHHHHHHHhhhcCccccccCCchHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45789888777654 22 3445678889999999999999998887744
No 266
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.02 E-value=1.2e+02 Score=31.52 Aligned_cols=67 Identities=10% Similarity=0.047 Sum_probs=41.9
Q ss_pred CeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
++++|.|.+ ..|..+++.|.+ .|..+.++.....+...+...+. +-.+.++.++.+|.+|++.++++
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~---~g~~v~~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 72 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAE---EGYDIAVNYARSRKAAEETAEEI---EALGRKALAVKANVGDVEKIKEM 72 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCEEEEEcCCCHHHHHHHHHHH---HhcCCeEEEEEcCCCCHHHHHHH
Confidence 578999986 479999999964 46666664322121111111111 11234678899999999988765
No 267
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=28.97 E-value=2.2e+02 Score=29.97 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCc
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~ 318 (856)
.+-||+|+|.|..|..+++.|...+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gv 45 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGV 45 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 46799999999999999999998765
No 268
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=28.94 E-value=2.9e+02 Score=30.78 Aligned_cols=80 Identities=11% Similarity=0.098 Sum_probs=48.8
Q ss_pred CCCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHH
Q 003021 293 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSY 371 (856)
Q Consensus 293 ~~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L 371 (856)
....++|.|. |-.|..++++|.+.+. .|+++ .++.+..+.+...+.. ..++.++.++..+.+.+
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~ 73 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-------------TVHAT-LRDPAKSLHLLSKWKE-GDRLRLFRADLQEEGSF 73 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------------EEEEE-eCChHHHHHHHHhhcc-CCeEEEEECCCCCHHHH
Confidence 4567999995 6799999999988654 45554 3443333333322211 12456666776677666
Q ss_pred HHcCccccCeEEEecCC
Q 003021 372 ERAAANKARAIIILPTK 388 (856)
Q Consensus 372 ~rA~v~~A~aVIIl~~~ 388 (856)
+++ ++..+.||-++..
T Consensus 74 ~~~-~~~~d~Vih~A~~ 89 (353)
T PLN02896 74 DEA-VKGCDGVFHVAAS 89 (353)
T ss_pred HHH-HcCCCEEEECCcc
Confidence 665 3457877766653
No 269
>PRK06181 short chain dehydrogenase; Provisional
Probab=28.87 E-value=2.3e+02 Score=29.73 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=35.8
Q ss_pred CeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 295 ~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
..++|.|.+ ..|..++++|.+.+. .|++ .+++.+..+.+.+.+........++..+..+.+.++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-------------~Vi~-~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~ 66 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-------------QLVL-AARNETRLASLAQELADHGGEALVVPTDVSDAEACE 66 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHH
Confidence 358899974 589999999986543 4554 456555555544332111113344444544544433
No 270
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=28.81 E-value=2.8e+02 Score=28.29 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=46.1
Q ss_pred EEEEc-CCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHcC
Q 003021 297 IIVCG-VNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAA 375 (856)
Q Consensus 297 iII~G-~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA~ 375 (856)
|+|+| .|-.|..++++|.+.++ .|+.+...+......... .++.++..+..+.+.++++-
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~-------------~v~~~~~~~~~~~~~~~~------~~~~~~~~dl~~~~~~~~~~ 61 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH-------------EVIVLSRSSNSESFEEKK------LNVEFVIGDLTDKEQLEKLL 61 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT-------------EEEEEESCSTGGHHHHHH------TTEEEEESETTSHHHHHHHH
T ss_pred EEEEccCCHHHHHHHHHHHHcCC-------------cccccccccccccccccc------ceEEEEEeeccccccccccc
Confidence 67888 55699999999998766 344455554433322211 15667777777776666552
Q ss_pred cc-ccCeEEEecCC
Q 003021 376 AN-KARAIIILPTK 388 (856)
Q Consensus 376 v~-~A~aVIIl~~~ 388 (856)
-. ..+.|+-++..
T Consensus 62 ~~~~~d~vi~~a~~ 75 (236)
T PF01370_consen 62 EKANIDVVIHLAAF 75 (236)
T ss_dssp HHHTESEEEEEBSS
T ss_pred cccCceEEEEeecc
Confidence 22 35888877664
No 271
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=28.77 E-value=2e+02 Score=29.63 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=24.7
Q ss_pred EEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHH
Q 003021 297 IIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 348 (856)
Q Consensus 297 iII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~ 348 (856)
++|.|.+ ..|..++++|.+.+. .++++...+.+..+.+.
T Consensus 1 vlItGas~giG~~~a~~l~~~G~-------------~v~~~~~~~~~~~~~~~ 40 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF-------------EICVHYHSGRSDAESVV 40 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC-------------EEEEEeCCCHHHHHHHH
Confidence 4667754 589999999987654 46665555444444433
No 272
>PRK06101 short chain dehydrogenase; Provisional
Probab=28.73 E-value=1.3e+02 Score=31.44 Aligned_cols=62 Identities=10% Similarity=0.077 Sum_probs=43.0
Q ss_pred CeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+.++|.|.+. .|..++++|.+ .|..|.+++.. +++.+.+.+ . ..+++++.+|.++++.++++
T Consensus 2 ~~vlItGas~giG~~la~~L~~---~G~~V~~~~r~--~~~~~~~~~----~--~~~~~~~~~D~~~~~~~~~~ 64 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAK---QGWQVIACGRN--QSVLDELHT----Q--SANIFTLAFDVTDHPGTKAA 64 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHh---CCCEEEEEECC--HHHHHHHHH----h--cCCCeEEEeeCCCHHHHHHH
Confidence 4688888764 68899999963 57888888763 233322221 1 12456799999999998886
No 273
>PRK09242 tropinone reductase; Provisional
Probab=28.73 E-value=1.1e+02 Score=32.21 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=44.8
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|.+ ..+..+++.|.+ .|..|.++...+ +..++..+++. ...++.++.++.+|.++.+.++++
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~---~G~~v~~~~r~~-~~~~~~~~~l~-~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLG---LGADVLIVARDA-DALAQARDELA-EEFPEREVHGLAADVSDDEDRRAI 78 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCH-HHHHHHHHHHH-hhCCCCeEEEEECCCCCHHHHHHH
Confidence 3678888875 578999999964 577888887632 22122111110 012345788899999999887664
No 274
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=28.66 E-value=1.2e+02 Score=25.13 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=31.4
Q ss_pred CCCCHHHHHccCC-ceEEEEEEECCEEEECC--CCCceecCCCEEEEEe
Q 003021 481 AGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHP--NDDETLQPTDKILFIA 526 (856)
Q Consensus 481 ~G~tf~el~~~~~-~aivIGI~r~G~~~lnP--~~d~vI~~gD~LivIa 526 (856)
.|.|+.|+...+. ...-+++..||++ +.+ -.++.|++||++-++.
T Consensus 14 ~~~tl~~lL~~l~~~~~~vav~vNg~i-v~r~~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 14 DGESVAALLAREGLAGRRVAVEVNGEI-VPRSQHASTALREGDVVEIVH 61 (66)
T ss_pred CCCCHHHHHHhcCCCCCeEEEEECCeE-eCHHHcCcccCCCCCEEEEEE
Confidence 4789999877654 3445556668885 332 2678999999997764
No 275
>PRK06101 short chain dehydrogenase; Provisional
Probab=28.63 E-value=2.1e+02 Score=29.75 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=38.0
Q ss_pred eEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHc
Q 003021 296 HIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERA 374 (856)
Q Consensus 296 HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA 374 (856)
-++|.|.+ ..|..++++|.+.+. .|++ .+++++.++++.+. ..++.++..|-++.+.++++
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~-------------~V~~-~~r~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~ 64 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGW-------------QVIA-CGRNQSVLDELHTQ----SANIFTLAFDVTDHPGTKAA 64 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCC-------------EEEE-EECCHHHHHHHHHh----cCCCeEEEeeCCCHHHHHHH
Confidence 47888865 589999999987544 4554 56666666665432 11345555665665555443
No 276
>PRK06914 short chain dehydrogenase; Provisional
Probab=28.62 E-value=2.6e+02 Score=29.75 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=38.7
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhcc-c-cCCceEEEecCCCHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAK-D-LNHIDILSKSLTLTKS 370 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~-d-~~~~~Vi~~~~~~~e~ 370 (856)
..+++|+|.+ ..|..++++|.+.+. .|+++ .++.+..+.+...... . .....++..+.++.+.
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~ 68 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-------------LVIAT-MRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNS 68 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-------------EEEEE-eCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHH
Confidence 3578999965 699999999987654 45544 5555555444332110 0 0134555666666665
Q ss_pred HHH
Q 003021 371 YER 373 (856)
Q Consensus 371 L~r 373 (856)
+++
T Consensus 69 ~~~ 71 (280)
T PRK06914 69 IHN 71 (280)
T ss_pred HHH
Confidence 543
No 277
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=28.54 E-value=4.9e+02 Score=31.18 Aligned_cols=141 Identities=13% Similarity=0.153 Sum_probs=76.0
Q ss_pred cCCCeEEE---EcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHH--HHHHhhccccCCceEEEecCC
Q 003021 292 LESDHIIV---CGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMD--KLAENIAKDLNHIDILSKSLT 366 (856)
Q Consensus 292 ~~~~HiII---~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e--~l~~~~~~d~~~~~Vi~~~~~ 366 (856)
..++|.++ +|.+.....-+++|.+++. +++++.-.+-.... +..+.....+++..++.++-.
T Consensus 232 d~~~~l~vgaavg~~~~~~~r~~~l~~ag~-------------d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~ 298 (505)
T PLN02274 232 GKDGKLLVGAAIGTRESDKERLEHLVKAGV-------------DVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVV 298 (505)
T ss_pred CCCCCEEEEEEEcCCccHHHHHHHHHHcCC-------------CEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 45778777 6666777888999998765 45554222211111 222222223456888888866
Q ss_pred CHHHHHHcCccccCeEEEec-------CCC-----CCCcchHHHHHHHHHcCCCCCCCCCCEEE--EEeCcCcHHHHHhc
Q 003021 367 LTKSYERAAANKARAIIILP-------TKG-----DRYEVDTDAFLSVLALQPIPKMNSVPTIV--EVSNPNTCELLKSL 432 (856)
Q Consensus 367 ~~e~L~rA~v~~A~aVIIl~-------~~~-----D~~~~Da~~l~~vLAlr~l~~~~~~~iIa--ev~d~~~~~~l~~~ 432 (856)
..+.-+++--.-||+|.+-. +.. .+...+...+ .++.+..++|+|+ -++++......-.+
T Consensus 299 t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~------~~~~~~~~vpVIadGGI~~~~di~kAla~ 372 (505)
T PLN02274 299 TMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKV------ASIAAQHGVPVIADGGISNSGHIVKALTL 372 (505)
T ss_pred CHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHH------HHHHHhcCCeEEEeCCCCCHHHHHHHHHc
Confidence 66555555556677665521 110 0000111111 1111113588988 66777666555567
Q ss_pred CCCeEEehHHHHHHHHHHHHccCC
Q 003021 433 SGLKVEPVENVASKLFVQCSRQKG 456 (856)
Q Consensus 433 g~~~Vi~~~~i~~~lLaq~~~~Pg 456 (856)
|++-|. +|.+++.+-..|+
T Consensus 373 GA~~V~-----vGs~~~~t~Esp~ 391 (505)
T PLN02274 373 GASTVM-----MGSFLAGTTEAPG 391 (505)
T ss_pred CCCEEE-----EchhhcccccCCc
Confidence 877554 4666666666564
No 278
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=28.51 E-value=2.9e+02 Score=26.45 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.8
Q ss_pred EEEEcCCchHHHHHHHHHhcCc
Q 003021 297 IIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 297 iII~G~~~~~~~li~eL~~~~~ 318 (856)
|.|+|.|..|..+...|.+.++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~ 22 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH 22 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC
T ss_pred CEEECcCHHHHHHHHHHHHCCC
Confidence 6899999999999999988665
No 279
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=28.48 E-value=1.2e+02 Score=33.54 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=43.7
Q ss_pred CeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCc---hhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPL---DDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~---~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+++||.|. |-.|..+++.|.+ .|.+|+.++..+. .++.+.+.+. .....+..+.++.||-+|.+.+.++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~l~~~ 73 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLE---KGYEVHGLIRRSSSFNTQRIEHIYED-PHNVNKARMKLHYGDLTDSSNLRRI 73 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHH---CCCEEEEEecCCcccchhhhhhhhhc-cccccccceeEEEeccCCHHHHHHH
Confidence 36899998 5689999999964 5778888775432 1121111100 0001123577899999999998876
No 280
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=28.45 E-value=2.5e+02 Score=30.89 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=29.2
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHhcC-cccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 294 SDHIIVCGVNS-HLSFILKQLNKYH-EFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 294 ~~HiII~G~~~-~~~~li~eL~~~~-~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
+.+++|.|.+. .|..++++|.+.+ . .|++ ..++.+..+++.+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~-------------~V~l-~~r~~~~~~~~~~ 46 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEW-------------HVIM-ACRDFLKAEQAAK 46 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCC-------------EEEE-EeCCHHHHHHHHH
Confidence 55889999876 8999999998765 3 4554 4555555555443
No 281
>PRK12742 oxidoreductase; Provisional
Probab=28.40 E-value=3e+02 Score=28.28 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=28.6
Q ss_pred CCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 294 ~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
...++|.|. +..|..++++|.+.+. .++++...+++..+++..
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~-------------~v~~~~~~~~~~~~~l~~ 49 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA-------------NVRFTYAGSKDAAERLAQ 49 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------EEEEecCCCHHHHHHHHH
Confidence 457899996 4699999999987654 455543444555555433
No 282
>PRK07890 short chain dehydrogenase; Provisional
Probab=28.29 E-value=1.1e+02 Score=31.96 Aligned_cols=67 Identities=4% Similarity=-0.048 Sum_probs=44.2
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+ ..+..+++.|.+ .|..|.+++..+. +-.+...++ .-.+.+++++..|.+|.+.++++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~---~G~~V~~~~r~~~-~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 72 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAAR---AGADVVLAARTAE-RLDEVAAEI---DDLGRRALAVPTDITDEDQCANL 72 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH---cCCEEEEEeCCHH-HHHHHHHHH---HHhCCceEEEecCCCCHHHHHHH
Confidence 4679999986 578999999964 5778888876432 111111111 01134578899999999988764
No 283
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=28.28 E-value=1.4e+02 Score=31.04 Aligned_cols=68 Identities=9% Similarity=0.042 Sum_probs=43.4
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+. .+..+++.|.+ .|..+.+......+..++...++ .-.+.+++++..|.++.+.+.++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~---~g~~v~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~D~~~~~~~~~~ 74 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQ---EGAKVVINYNSSKEAAENLVNEL---GKEGHDVYAVQADVSKVEDANRL 74 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---cCCEEEEEcCCcHHHHHHHHHHH---HhcCCeEEEEECCCCCHHHHHHH
Confidence 47899999765 68899999964 46667665432222222222221 01124578899999999988876
No 284
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=28.14 E-value=1.6e+02 Score=30.49 Aligned_cols=67 Identities=16% Similarity=-0.054 Sum_probs=42.4
Q ss_pred CeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
++++|.|.+ ..+..+++.|.+ .|..+.++...+.++..+..... ...+.++.++.+|.++.+.++++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~---~g~~vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~v~~~ 70 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLN---DGYRVIATYFSGNDCAKDWFEEY---GFTEDQVRLKELDVTDTEECAEA 70 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCcHHHHHHHHHHh---hccCCeEEEEEcCCCCHHHHHHH
Confidence 578888865 468999999964 46677777653221111111111 11234578899999999988775
No 285
>PRK06988 putative formyltransferase; Provisional
Probab=28.13 E-value=2.1e+02 Score=31.90 Aligned_cols=23 Identities=13% Similarity=-0.073 Sum_probs=20.2
Q ss_pred eEEEEcCCchHHHHHHHHHhcCc
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~ 318 (856)
.|+++|.+..+...+++|...+.
T Consensus 4 kIvf~Gs~~~a~~~L~~L~~~~~ 26 (312)
T PRK06988 4 RAVVFAYHNVGVRCLQVLLARGV 26 (312)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCC
Confidence 58999999999999999987654
No 286
>PRK12937 short chain dehydrogenase; Provisional
Probab=28.04 E-value=1.5e+02 Score=30.62 Aligned_cols=67 Identities=4% Similarity=-0.029 Sum_probs=42.8
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhh-cccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS-NAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l-~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+ ..+..+++.|.+ .|..+.++.... ++..+.+ .++ ...+.+++++..|.++.+.++++
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~---~g~~v~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 73 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAA---DGFAVAVNYAGS-AAAADELVAEI---EAAGGRAIAVQADVADAAAVTRL 73 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEecCCC-HHHHHHHHHHH---HhcCCeEEEEECCCCCHHHHHHH
Confidence 4789999985 578999999964 466676665422 1111111 111 11234678899999999888775
No 287
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=28.03 E-value=3.5e+02 Score=30.57 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=23.7
Q ss_pred cCCCeEEEEcCCchHHHHHHHHHhcCc
Q 003021 292 LESDHIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 292 ~~~~HiII~G~~~~~~~li~eL~~~~~ 318 (856)
..+-+|+|+|.|..|..+++.|..++.
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGv 48 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGV 48 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 347789999999999999999998765
No 288
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=27.91 E-value=1.4e+02 Score=31.44 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=43.6
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|.+. .|..+++.|. ..|..|.+++.. +++.+.+.+ ..+.+++++.+|.++.+.+.++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~---~~G~~V~~~~r~--~~~~~~l~~-----~~~~~~~~~~~D~~~~~~~~~~ 69 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFV---AEGARVAVLDKS--AAGLQELEA-----AHGDAVVGVEGDVRSLDDHKEA 69 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHH---HCCCEEEEEeCC--HHHHHHHHh-----hcCCceEEEEeccCCHHHHHHH
Confidence 47889999865 7999999996 457888887753 222222221 1133577899999998877664
No 289
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=27.87 E-value=1.5e+02 Score=31.13 Aligned_cols=67 Identities=12% Similarity=0.044 Sum_probs=44.3
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.+||.|.+ ..+..+++.|.+ .|..|.++...+. ...+...++. . .+.++.++.+|.++.+.++++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~---~G~~v~~~~r~~~-~~~~~~~~~~--~-~~~~~~~~~~Dl~~~~~~~~~ 74 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELAR---AGAAVAIADLNQD-GANAVADEIN--K-AGGKAIGVAMDVTNEDAVNAG 74 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCeEEEEeCChH-HHHHHHHHHH--h-cCceEEEEECCCCCHHHHHHH
Confidence 3679999985 578899999964 5777888776432 1111111110 1 134577899999999988765
No 290
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.81 E-value=1.3e+02 Score=30.88 Aligned_cols=67 Identities=6% Similarity=-0.089 Sum_probs=42.0
Q ss_pred CeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+++||.|.. ..+..+++.|.+ .|..+.++...+.+ ..+.+... ....+.+++++.+|.++.+.++++
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~---~g~~v~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~D~~~~~~v~~~ 74 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLAR---AGADVVVHYRSDEE-AAEELVEA--VEALGRRAQAVQADVTDKAALEAA 74 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCeEEEEeCCCHH-HHHHHHHH--HHhcCCceEEEECCcCCHHHHHHH
Confidence 578999875 578999999964 46666665543222 21111110 011134577899999999988775
No 291
>PRK06841 short chain dehydrogenase; Provisional
Probab=27.77 E-value=1.3e+02 Score=31.37 Aligned_cols=64 Identities=9% Similarity=0.076 Sum_probs=43.4
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+++||.|. |..+..+++.|.+ .|..|.+++..+ +..+... .+...++..+..|.++.+.++++
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~---~G~~Vi~~~r~~--~~~~~~~-----~~~~~~~~~~~~Dl~~~~~~~~~ 79 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAA---KGARVALLDRSE--DVAEVAA-----QLLGGNAKGLVCDVSDSQSVEAA 79 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHH-----HhhCCceEEEEecCCCHHHHHHH
Confidence 468999997 4679999999964 577788777532 2221111 12234456799999999988775
No 292
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=27.74 E-value=2.6e+02 Score=28.61 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=36.3
Q ss_pred CeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH
Q 003021 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER 373 (856)
Q Consensus 295 ~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r 373 (856)
..++|.|.+ ..|..++++|.+.++ .|++ ..++++..+.+.......-....++..+..+.+.+.+
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~-------------~v~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGA-------------KVVI-YDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRA 71 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-------------EEEE-EeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 578999964 689999999987654 4444 4665555444333221110123344455555544433
No 293
>PRK07814 short chain dehydrogenase; Provisional
Probab=27.70 E-value=2.8e+02 Score=29.30 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=37.7
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
..-++|.|.+. .|..+++.|.+.+. .|++ .+++.+..+++.........++.++..+.++++.++
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~-------------~Vi~-~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~ 75 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGA-------------DVLI-AARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATA 75 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHH
Confidence 34578888774 89999999987644 4555 466665555544332111113344445555555444
Q ss_pred H
Q 003021 373 R 373 (856)
Q Consensus 373 r 373 (856)
+
T Consensus 76 ~ 76 (263)
T PRK07814 76 G 76 (263)
T ss_pred H
Confidence 3
No 294
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=27.69 E-value=1.9e+02 Score=30.30 Aligned_cols=65 Identities=9% Similarity=0.027 Sum_probs=44.3
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|... .+..++++|.+ .|..|.+++....++..+.+.+ + +.+++++..|.+|.+.++++
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~---~G~~vv~~~~~~~~~~~~~~~~-----~-~~~~~~~~~Dl~~~~~~~~~ 75 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAE---AGCDIVGINIVEPTETIEQVTA-----L-GRRFLSLTADLRKIDGIPAL 75 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEecCcchHHHHHHHHh-----c-CCeEEEEECCCCCHHHHHHH
Confidence 36889999875 78999999964 5777877754333222222221 1 34577899999999888775
No 295
>PRK07062 short chain dehydrogenase; Provisional
Probab=27.66 E-value=1.2e+02 Score=32.02 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=44.8
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhh-cccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS-NAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l-~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|.++ .+..++++|.+ .|..|.++...+ ++.+.. .++ ....++.+++.+.+|.+|.+.++++
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~---~G~~V~~~~r~~--~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~v~~~ 77 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLE---AGASVAICGRDE--ERLASAEARL-REKFPGARLLAARCDVLDEADVAAF 77 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCeEEEEeCCH--HHHHHHHHHH-HhhCCCceEEEEEecCCCHHHHHHH
Confidence 46889999875 68999999963 577788777632 221111 111 0123345678899999999988765
No 296
>PRK07023 short chain dehydrogenase; Provisional
Probab=27.64 E-value=1.6e+02 Score=30.69 Aligned_cols=60 Identities=8% Similarity=-0.028 Sum_probs=41.6
Q ss_pred eEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 596 RILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 596 ~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+++|.|.+ ..+..+++.|.+ .|..+.++...+..+. . ...+.++.++.+|.++.+.++++
T Consensus 3 ~vlItGasggiG~~ia~~l~~---~G~~v~~~~r~~~~~~---~------~~~~~~~~~~~~D~~~~~~~~~~ 63 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQ---PGIAVLGVARSRHPSL---A------AAAGERLAEVELDLSDAAAAAAW 63 (243)
T ss_pred eEEEecCCcchHHHHHHHHHh---CCCEEEEEecCcchhh---h------hccCCeEEEEEeccCCHHHHHHH
Confidence 68899985 578999999963 5777877765322111 0 11234577899999999988873
No 297
>PRK05866 short chain dehydrogenase; Provisional
Probab=27.62 E-value=1.4e+02 Score=32.39 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=43.7
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhc-ccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASN-AIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~-~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+ ..|..++++|.+ .|..|.+++..+ ++-+.+. ++. . .+.++.++.+|.+|.+.+.++
T Consensus 40 ~k~vlItGasggIG~~la~~La~---~G~~Vi~~~R~~--~~l~~~~~~l~--~-~~~~~~~~~~Dl~d~~~v~~~ 107 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFAR---RGATVVAVARRE--DLLDAVADRIT--R-AGGDAMAVPCDLSDLDAVDAL 107 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEECCH--HHHHHHHHHHH--h-cCCcEEEEEccCCCHHHHHHH
Confidence 3679999984 579999999964 577888887632 2211111 110 0 134567899999999887765
No 298
>PRK06940 short chain dehydrogenase; Provisional
Probab=27.45 E-value=1.2e+02 Score=32.52 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=43.9
Q ss_pred CCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
++.++|-|.+..+..+++.|. .|..|.+++..+ +...+...++ .-.+.+++++.+|.+|.+.++++
T Consensus 2 ~k~~lItGa~gIG~~la~~l~----~G~~Vv~~~r~~-~~~~~~~~~l---~~~~~~~~~~~~Dv~d~~~i~~~ 67 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG----AGKKVLLADYNE-ENLEAAAKTL---REAGFDVSTQEVDVSSRESVKAL 67 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh----CCCEEEEEeCCH-HHHHHHHHHH---HhcCCeEEEEEeecCCHHHHHHH
Confidence 357888888888999999983 477888887532 1111121211 01134677899999999988775
No 299
>PRK07063 short chain dehydrogenase; Provisional
Probab=27.45 E-value=2.6e+02 Score=29.38 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=29.9
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHh
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN 350 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~ 350 (856)
...++|.|.+ ..|..++++|.+.+. .|++ .+++++..+++.+.
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~-------------~vv~-~~r~~~~~~~~~~~ 50 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA-------------AVAL-ADLDAALAERAAAA 50 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHH
Confidence 4578999976 489999999987654 4554 46666666665443
No 300
>PRK07478 short chain dehydrogenase; Provisional
Probab=27.26 E-value=2.7e+02 Score=29.06 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=28.7
Q ss_pred CeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 295 ~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
..++|.|.+ ..|..++++|.+.+. .|++ ..++++..+.+.+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~-------------~v~~-~~r~~~~~~~~~~ 48 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGA-------------KVVV-GARRQAELDQLVA 48 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHH
Confidence 468888876 489999999988654 4555 4566666665544
No 301
>PRK09186 flagellin modification protein A; Provisional
Probab=27.23 E-value=2.8e+02 Score=28.87 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=28.8
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
...++|.|.+ ..|..++++|.+.+. .|++ ..++++..+.+.+
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~-------------~v~~-~~r~~~~~~~~~~ 46 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG-------------IVIA-ADIDKEALNELLE 46 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEE-EecChHHHHHHHH
Confidence 4568899975 599999999988654 4554 4555555555443
No 302
>PRK08226 short chain dehydrogenase; Provisional
Probab=27.21 E-value=1.3e+02 Score=31.61 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=44.3
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|... .+..+++.|.+ .|..|++++... +..+...+. .-.+.++.++.+|.++++.++++
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~---~G~~Vv~~~r~~--~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~v~~~ 72 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFAR---HGANLILLDISP--EIEKLADEL---CGRGHRCTAVVADVRDPASVAAA 72 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH---CCCEEEEecCCH--HHHHHHHHH---HHhCCceEEEECCCCCHHHHHHH
Confidence 47889998775 78899999964 577888887632 111121111 01234577899999999988775
No 303
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=27.10 E-value=1.6e+02 Score=35.53 Aligned_cols=81 Identities=10% Similarity=0.057 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhcCC--C----C--------C------HHHHHHHHHHhhhc
Q 003021 179 ARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDE--T----Q--------S------LEDCLWEAWACLIS 238 (856)
Q Consensus 179 ~rl~y~fd~~~~~~~~~~~~~l~~~~~~iv~~g~~l~~~~eg~--~----~--------s------~~dalw~~~~~vt~ 238 (856)
--+-++||....+.. .-+.++.+.++++++|.+++++.|-. . . . +..++|.+.++-|+
T Consensus 265 lGf~v~~g~~~~~~r--h~kivl~~~~iL~i~g~~~~~~~E~~~np~l~~l~~~gn~egKE~RfG~~~salF~svTtrtT 342 (559)
T PRK05482 265 AALVFTFGRMVGDRR--QGWAILAAMLVLFLAGLAVTMWAELQGNPALAALGIDGNMEGKEVRFGIAASALFAVVTTAAS 342 (559)
T ss_pred HHHHHHHHHHhcCcC--ceehhHHHHHHHHHHHHHHHHHHHccCCcchhhccCCCCcccchhhhhhHHHHHHHHHHhhhh
Confidence 335566776652211 12233444456667777777766611 1 1 2 55777755544333
Q ss_pred cc-c--ccccCCcchhHHHHHHHHHH
Q 003021 239 SS-T--HLKQRTRVERVIGFILAIWG 261 (856)
Q Consensus 239 st-~--g~gd~T~~gRl~~v~l~l~G 261 (856)
+| + -.+.-|+.+.++.+++++.|
T Consensus 343 aG~fNsm~dsltp~~~lv~m~lMfIG 368 (559)
T PRK05482 343 TGAVNAMHDSLTPLGGLVPLLNMQLG 368 (559)
T ss_pred cchHHHHHHhhccHHHHHHHHHHHhC
Confidence 32 2 13447788999888888876
No 304
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=27.05 E-value=3.2e+02 Score=26.18 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=25.4
Q ss_pred eEEEEeccccHHHHHHHHhcccCCCc-eEEEEcCC
Q 003021 596 RILLLGWRPDVVEMIEEYDNYLGPGS-VLEILSDV 629 (856)
Q Consensus 596 ~vLI~Gw~r~~~~li~eL~~~~~~gs-~v~Ii~~~ 629 (856)
+|+|+|-|..|..+++.|.. .|. .+++++..
T Consensus 1 ~VliiG~GglGs~ia~~L~~---~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR---SGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH---CCCCEEEEEcCC
Confidence 68999999999999999964 343 68888763
No 305
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.04 E-value=1.4e+02 Score=32.60 Aligned_cols=68 Identities=9% Similarity=-0.008 Sum_probs=43.9
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.+||.|.++ .+..++++|.+ .|..|++.+..+.+...+...++ .-.+.++.++.+|.+|.+.+++.
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~---~Ga~Vv~~~~~~~~~~~~~~~~i---~~~g~~~~~~~~Dv~d~~~~~~~ 80 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLAR---LGATVVVNDVASALDASDVLDEI---RAAGAKAVAVAGDISQRATADEL 80 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEecCCchhHHHHHHHHH---HhcCCeEEEEeCCCCCHHHHHHH
Confidence 46789998875 78899999964 56677776542222212222211 11244678899999999888775
No 306
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=26.87 E-value=3.1e+02 Score=29.44 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCc
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~ 318 (856)
-+.|++|+|.|..+..+.+.....+.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf 124 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPC 124 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCC
Confidence 47899999999999999998887654
No 307
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=26.80 E-value=3.1e+02 Score=28.37 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=38.3
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|.|.+ ..|..++++|.+.+. .|++ .+++.+..+.+.+..........++..+..+.+.++
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~-------------~v~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 68 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA-------------KVAV-FDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVD 68 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------------EEEE-ecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHH
Confidence 4568888864 599999999988654 4554 456555554443322111113445555655655544
Q ss_pred H
Q 003021 373 R 373 (856)
Q Consensus 373 r 373 (856)
+
T Consensus 69 ~ 69 (250)
T TIGR03206 69 T 69 (250)
T ss_pred H
Confidence 4
No 308
>PRK06181 short chain dehydrogenase; Provisional
Probab=26.76 E-value=1.3e+02 Score=31.67 Aligned_cols=66 Identities=6% Similarity=-0.021 Sum_probs=43.1
Q ss_pred CeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+.+||.|.+ ..+..+++.|. ..|..|.+++..+. +..+...++ .-.+.+++++.+|.+|.+.++++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~---~~g~~Vi~~~r~~~-~~~~~~~~l---~~~~~~~~~~~~Dl~~~~~~~~~ 68 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLA---RAGAQLVLAARNET-RLASLAQEL---ADHGGEALVVPTDVSDAEACERL 68 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHH---HCCCEEEEEeCCHH-HHHHHHHHH---HhcCCcEEEEEccCCCHHHHHHH
Confidence 468999984 57899999995 35777888876422 111111111 01133577899999999988765
No 309
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=26.58 E-value=1.4e+02 Score=25.04 Aligned_cols=45 Identities=24% Similarity=0.246 Sum_probs=31.3
Q ss_pred CCCCHHHHHccCC-ceEEEEEEECCEEEECC---CCCceecCCCEEEEEec
Q 003021 481 AGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHP---NDDETLQPTDKILFIAP 527 (856)
Q Consensus 481 ~G~tf~el~~~~~-~aivIGI~r~G~~~lnP---~~d~vI~~gD~LivIa~ 527 (856)
.|.|+.|+...+. ..--+++..|+++ .| -.++.|++||++-++..
T Consensus 14 ~~~tl~~ll~~l~~~~~~vaVavN~~i--v~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 14 AGQTVHELLEQLNQLQPGAALAINQQI--IPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CCCCHHHHHHHcCCCCCcEEEEECCEE--eChHHcCccccCCCCEEEEEEE
Confidence 3678888766543 2233667779985 45 35668999999988754
No 310
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=26.55 E-value=2.9e+02 Score=30.32 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=35.2
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhh
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENI 351 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~ 351 (856)
..+++|+|.|..+..++..|...+. ..|+| .+++.+..+.+.+.+
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~------------~~I~I-~nR~~~ka~~la~~l 171 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGV------------ERLTI-FDVDPARAAALADEL 171 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC------------CEEEE-ECCCHHHHHHHHHHH
Confidence 4689999999999999999987654 25665 588877777776654
No 311
>PRK06483 dihydromonapterin reductase; Provisional
Probab=26.49 E-value=1.1e+02 Score=31.80 Aligned_cols=62 Identities=6% Similarity=-0.109 Sum_probs=42.3
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+++||.|.++ .+..+++.|.+ .|..|.+++..+.+. .+.+. ...++++.+|.++.+.+++.
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~---~G~~V~~~~r~~~~~-~~~~~--------~~~~~~~~~D~~~~~~~~~~ 64 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLA---QGQPVIVSYRTHYPA-IDGLR--------QAGAQCIQADFSTNAGIMAF 64 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHH---CCCeEEEEeCCchhH-HHHHH--------HcCCEEEEcCCCCHHHHHHH
Confidence 35789999865 78999999963 577888887643221 11111 11246789999999988775
No 312
>PRK06483 dihydromonapterin reductase; Provisional
Probab=26.39 E-value=2.7e+02 Score=28.66 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=19.6
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHhcCc
Q 003021 294 SDHIIVCGVNS-HLSFILKQLNKYHE 318 (856)
Q Consensus 294 ~~HiII~G~~~-~~~~li~eL~~~~~ 318 (856)
...++|.|.+. .|..++++|.+.+.
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~ 27 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ 27 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC
Confidence 34688999765 89999999987654
No 313
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.36 E-value=2.2e+02 Score=33.06 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=42.9
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCC-hhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP-RKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~-~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|+|.|..|..+++.|.+.+. .|++ .|.+ .+.+++..+.+. ..+.+++.++..+
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~-------------~V~~-~d~~~~~~~~~~~~~l~--~~~~~~~~~~~~~----- 63 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGA-------------KVIL-TDEKEEDQLKEALEELG--ELGIELVLGEYPE----- 63 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-------------EEEE-EeCCchHHHHHHHHHHH--hcCCEEEeCCcch-----
Confidence 4678999999999999999998765 4555 4543 344444333221 1256666665332
Q ss_pred HcCccccCeEEEe
Q 003021 373 RAAANKARAIIIL 385 (856)
Q Consensus 373 rA~v~~A~aVIIl 385 (856)
.....++.||+.
T Consensus 64 -~~~~~~d~vv~~ 75 (450)
T PRK14106 64 -EFLEGVDLVVVS 75 (450)
T ss_pred -hHhhcCCEEEEC
Confidence 123567865543
No 314
>PRK08264 short chain dehydrogenase; Validated
Probab=26.29 E-value=1.4e+02 Score=30.86 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=42.0
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCc-eEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGS-VLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs-~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|. |..+..+++.|.+ .|. .|.++...+ ++.+ . .+..++++.+|.++.+.++++
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~---~G~~~V~~~~r~~--~~~~--------~-~~~~~~~~~~D~~~~~~~~~~ 67 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLA---RGAAKVYAAARDP--ESVT--------D-LGPRVVPLQLDVTDPASVAAA 67 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCcccEEEEecCh--hhhh--------h-cCCceEEEEecCCCHHHHHHH
Confidence 478999997 5679999999964 465 677776532 1111 0 123567799999999998875
No 315
>PRK05884 short chain dehydrogenase; Provisional
Probab=26.27 E-value=2.3e+02 Score=29.26 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=38.1
Q ss_pred eEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHc
Q 003021 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERA 374 (856)
Q Consensus 296 HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA 374 (856)
+++|.|. +..|..++++|.+.+. .|++ .+++++.++.+.+.. +..++..|.++.+.++++
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-------------~v~~-~~r~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~ 62 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-------------KVTL-VGARRDDLEVAAKEL-----DVDAIVCDNTDPASLEEA 62 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHhc-----cCcEEecCCCCHHHHHHH
Confidence 3788886 4689999999987654 4554 466666666554421 344555666666555543
No 316
>PRK06114 short chain dehydrogenase; Provisional
Probab=26.27 E-value=1.5e+02 Score=31.16 Aligned_cols=68 Identities=7% Similarity=0.030 Sum_probs=43.5
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.+||.|.+. .+..+++.|.+ .|..+.+++..+.+...+...++. . .+.++.++.+|.+|++.++++
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~---~G~~v~~~~r~~~~~~~~~~~~l~--~-~~~~~~~~~~D~~~~~~i~~~ 76 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQ---AGADVALFDLRTDDGLAETAEHIE--A-AGRRAIQIAADVTSKADLRAA 76 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCcchHHHHHHHHHH--h-cCCceEEEEcCCCCHHHHHHH
Confidence 36788888775 68899999964 577888876532211111111110 1 133567799999999988875
No 317
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=26.25 E-value=1.6e+02 Score=35.07 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHhhhccccccccC---Ccch------hHHHHHHHHHHH-HHHHHHHH
Q 003021 201 AVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQR---TRVE------RVIGFILAIWGI-LFYSRLLS 270 (856)
Q Consensus 201 ~~~~~~iv~~g~~l~~~~eg~~~s~~dalw~~~~~vt~st~g~gd~---T~~g------Rl~~v~l~l~Gi-~~fa~li~ 270 (856)
+++.+++++++.++....+ .+ ++.+++..+.....+.|.+.|-. +..+ +++.+++++.|= .+++.++.
T Consensus 403 ~~l~~~~~~i~~~~l~~~~-~~-~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~GRleil~~lv~ 480 (499)
T COG0168 403 FFLYLLILIIGALILILTG-YD-PFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIGRLEILTVLVL 480 (499)
T ss_pred HHHHHHHHHHHHHHHHHhc-Cc-cHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhhccchhhHHHh
Confidence 3333455556655555554 33 89999998877776666655542 2334 887777776664 55555444
Q ss_pred H
Q 003021 271 T 271 (856)
Q Consensus 271 ~ 271 (856)
+
T Consensus 481 ~ 481 (499)
T COG0168 481 F 481 (499)
T ss_pred h
Confidence 3
No 318
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=26.21 E-value=2.4e+02 Score=32.23 Aligned_cols=25 Identities=12% Similarity=-0.015 Sum_probs=22.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCc
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~ 318 (856)
+-+|+|+|.|-.|..+++.|...+.
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gv 159 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGV 159 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCC
Confidence 5579999999999999999988765
No 319
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=26.12 E-value=1.3e+02 Score=24.49 Aligned_cols=49 Identities=16% Similarity=0.396 Sum_probs=33.0
Q ss_pred CCCCCCCCHHHHHccCC-ceEEEEEE---E----CCEE-EECCCCCceecCCCEEEEE
Q 003021 477 FPNLAGIKYRQLRRGFQ-EAVVCGLY---R----NGKI-YFHPNDDETLQPTDKILFI 525 (856)
Q Consensus 477 ~p~l~G~tf~el~~~~~-~aivIGI~---r----~G~~-~lnP~~d~vI~~gD~LivI 525 (856)
.|++.|+++.|+...+. ...-+... . .|.+ .-+|.+.+.+..|+.+.+.
T Consensus 3 vPd~~g~~~~~a~~~l~~~g~~~~~~~~~~~~~~~g~V~~Q~P~~G~~v~~~~~I~l~ 60 (63)
T PF03793_consen 3 VPDLVGMTYDEAKSILEAAGLTVNVVEEYSDSVPKGTVISQSPAPGTKVKKGSKITLT 60 (63)
T ss_dssp E-TTTTSBHHHHHHHHHHTT-EEEEEEEEESSSSTTSEEEESSCTTSEEETTSEEEEE
T ss_pred CCCcCCCcHHHHHHHHHHCCCEEEEEEEecCCCCCCEEEEEECCCCCCcCCCCEEEEE
Confidence 48999999999877654 12233332 1 3554 3689999999999988764
No 320
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=26.12 E-value=2e+02 Score=31.04 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=39.5
Q ss_pred ccCCceEEEecCCC-HHHHHHcCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEE
Q 003021 354 DLNHIDILSKSLTL-TKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIV 418 (856)
Q Consensus 354 d~~~~~Vi~~~~~~-~e~L~rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIa 418 (856)
.+++.+|+.|+++. .|.|++++ .-|++++-...+. -.--.+|++++++ |++.+++
T Consensus 150 Py~~p~vIaGqgTiA~ElleqVg--~iDalfvpvgGGG------llSgvAlaa~~l~--P~i~vy~ 205 (323)
T KOG1251|consen 150 PYNHPSVIAGQGTIALELLEQVG--EIDALFVPVGGGG------LLSGVALAAKSLK--PSIEVYA 205 (323)
T ss_pred CCCCcceeeccchHHHHHHHhhC--ccceEEEeecCcc------hhhHHHHHHhccC--CCcEEEE
Confidence 34577899999885 68999998 6677776555432 0112568899998 9999876
No 321
>PRK12827 short chain dehydrogenase; Provisional
Probab=26.09 E-value=2.9e+02 Score=28.48 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=19.9
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCc
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHE 318 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~ 318 (856)
...++|.|.+ ..|..++++|.+.++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~ 31 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA 31 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 4578899865 589999999998655
No 322
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=26.08 E-value=3.4e+02 Score=27.92 Aligned_cols=24 Identities=21% Similarity=0.093 Sum_probs=18.3
Q ss_pred CeEEEEcCC-chHHHHHHHHHhcCc
Q 003021 295 DHIIVCGVN-SHLSFILKQLNKYHE 318 (856)
Q Consensus 295 ~HiII~G~~-~~~~~li~eL~~~~~ 318 (856)
..++|.|.+ ..|..++++|.+.+.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~ 27 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY 27 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC
Confidence 467888754 589999999987644
No 323
>PRK08589 short chain dehydrogenase; Validated
Probab=26.01 E-value=2.9e+02 Score=29.42 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=20.3
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHhcCc
Q 003021 294 SDHIIVCGVNS-HLSFILKQLNKYHE 318 (856)
Q Consensus 294 ~~HiII~G~~~-~~~~li~eL~~~~~ 318 (856)
..+++|.|.+. .|..++++|.+.+.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~ 31 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA 31 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 45789999865 89999999988654
No 324
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=25.97 E-value=81 Score=28.83 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=27.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCC
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP 340 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~ 340 (856)
...+++|+|.|+.+..-++.|.+.+. .|.|+++..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-------------~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGA-------------KVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTB-------------EEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-------------EEEEECCch
Confidence 46789999999999999999988754 577777654
No 325
>PRK06138 short chain dehydrogenase; Provisional
Probab=25.78 E-value=3.1e+02 Score=28.38 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=38.1
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
..+++|.|.+ ..|..++++|.+.+. .|++ ..++.+..+......... ....++..+.++++.++
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~-------------~v~~-~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~ 69 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA-------------RVVV-ADRDAEAAERVAAAIAAG-GRAFARQGDVGSAEAVE 69 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-------------eEEE-ecCCHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHH
Confidence 4588999975 589999999987654 4554 456555555443322111 12344555555655554
Q ss_pred H
Q 003021 373 R 373 (856)
Q Consensus 373 r 373 (856)
+
T Consensus 70 ~ 70 (252)
T PRK06138 70 A 70 (252)
T ss_pred H
Confidence 4
No 326
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=25.66 E-value=3e+02 Score=24.27 Aligned_cols=93 Identities=14% Similarity=0.081 Sum_probs=41.6
Q ss_pred eCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHcCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCE
Q 003021 337 SDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPT 416 (856)
Q Consensus 337 ~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~i 416 (856)
+|.++...+.+...+. ..++..+..-.+..+.+....-...+.++ +.-..+ +.+...+.. .++... ++.|+
T Consensus 4 vd~~~~~~~~l~~~l~--~~~~~~v~~~~~~~~~~~~~~~~~~d~ii-id~~~~--~~~~~~~~~--~i~~~~--~~~~i 74 (112)
T PF00072_consen 4 VDDDPEIRELLEKLLE--RAGYEEVTTASSGEEALELLKKHPPDLII-IDLELP--DGDGLELLE--QIRQIN--PSIPI 74 (112)
T ss_dssp EESSHHHHHHHHHHHH--HTTEEEEEEESSHHHHHHHHHHSTESEEE-EESSSS--SSBHHHHHH--HHHHHT--TTSEE
T ss_pred EECCHHHHHHHHHHHH--hCCCCEEEEECCHHHHHHHhcccCceEEE-EEeeec--ccccccccc--cccccc--ccccE
Confidence 4555544444333222 12542222223445556666556677433 332222 112222222 223333 67788
Q ss_pred EEEEeCcCcHH--HHHhcCCCeEE
Q 003021 417 IVEVSNPNTCE--LLKSLSGLKVE 438 (856)
Q Consensus 417 Iaev~d~~~~~--~l~~~g~~~Vi 438 (856)
|+-..+.+... ....+|++..+
T Consensus 75 i~~t~~~~~~~~~~~~~~g~~~~l 98 (112)
T PF00072_consen 75 IVVTDEDDSDEVQEALRAGADDYL 98 (112)
T ss_dssp EEEESSTSHHHHHHHHHTTESEEE
T ss_pred EEecCCCCHHHHHHHHHCCCCEEE
Confidence 77665555333 34466776555
No 327
>PRK06949 short chain dehydrogenase; Provisional
Probab=25.66 E-value=1.2e+02 Score=31.82 Aligned_cols=66 Identities=11% Similarity=0.075 Sum_probs=43.7
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhc-ccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASN-AIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~-~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|. |..+..++++|.+ .|..|.++... +++.+.+. ++. -.+.+++.+.+|.++.+.++++
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~---~G~~Vi~~~r~--~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~ 76 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQ---AGAKVVLASRR--VERLKELRAEIE---AEGGAAHVVSLDVTDYQSIKAA 76 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHHHHH---hcCCcEEEEEecCCCHHHHHHH
Confidence 478999997 5689999999964 57777777653 22222221 110 0123567799999999988775
No 328
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=25.62 E-value=1.5e+02 Score=30.67 Aligned_cols=67 Identities=10% Similarity=-0.025 Sum_probs=41.2
Q ss_pred CeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+.+||.|.+ ..+..+++.|.+ .|..|.++.....+...+...++ .-.+..++++.+|.+|.+.++++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~---~g~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~d~~~i~~~ 69 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQ---EGYTVAVNYQQNLHAAQEVVNLI---TQAGGKAFVLQADISDENQVVAM 69 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCCChHHHHHHHHHH---HhCCCeEEEEEccCCCHHHHHHH
Confidence 368899985 579999999963 56677654322111111121111 01133577899999999988875
No 329
>PRK06123 short chain dehydrogenase; Provisional
Probab=25.59 E-value=3.4e+02 Score=28.01 Aligned_cols=24 Identities=8% Similarity=-0.060 Sum_probs=18.5
Q ss_pred CeEEEEcCCc-hHHHHHHHHHhcCc
Q 003021 295 DHIIVCGVNS-HLSFILKQLNKYHE 318 (856)
Q Consensus 295 ~HiII~G~~~-~~~~li~eL~~~~~ 318 (856)
.-++|.|.+. .|..++++|.+.+.
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~ 27 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGY 27 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 3578889765 88999999987643
No 330
>PRK06482 short chain dehydrogenase; Provisional
Probab=25.55 E-value=1.5e+02 Score=31.48 Aligned_cols=63 Identities=10% Similarity=0.002 Sum_probs=42.7
Q ss_pred CeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+++||.|.+ -.+..++++|. ..|..|.++... +++.+.+.+ .. +.++.++.+|.+|.+.++++
T Consensus 3 k~vlVtGasg~IG~~la~~L~---~~g~~v~~~~r~--~~~~~~~~~----~~-~~~~~~~~~D~~~~~~~~~~ 66 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLL---ARGDRVAATVRR--PDALDDLKA----RY-GDRLWVLQLDVTDSAAVRAV 66 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHH---HCCCEEEEEeCC--HHHHHHHHH----hc-cCceEEEEccCCCHHHHHHH
Confidence 568999975 57999999996 357778877753 232222221 11 22567799999999988775
No 331
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=25.55 E-value=4e+02 Score=30.59 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHhhhcccc
Q 003021 199 VLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSST 241 (856)
Q Consensus 199 ~l~~~~~~iv~~g~~l~~~~eg~~~s~~dalw~~~~~vt~st~ 241 (856)
.++.+-+++.+++.+.|+..+ . .+++||++.+...++++|.
T Consensus 105 ~~~~iy~~lt~l~~~~~~~~g-~-~~~~~Aif~avSa~~taGF 145 (390)
T TIGR00933 105 FIFVIYLLGTILLAVRFVLTG-W-MPLFDAIFHSISAFNNGGF 145 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-c-hHHHHHHHHHHHHHhcCCc
Confidence 333333344445545554432 2 7899999988777766655
No 332
>PRK07904 short chain dehydrogenase; Provisional
Probab=25.53 E-value=2.9e+02 Score=29.22 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=19.4
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHhc
Q 003021 294 SDHIIVCGVNS-HLSFILKQLNKY 316 (856)
Q Consensus 294 ~~HiII~G~~~-~~~~li~eL~~~ 316 (856)
...++|+|.+. .|..++++|.+.
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~ 31 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKN 31 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc
Confidence 56799999775 899999999875
No 333
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=25.52 E-value=1.4e+02 Score=31.31 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=41.9
Q ss_pred eEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 596 RILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 596 ~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+++|.|.+ ..|..+++.|.+ .|..|.+++..+ ++.+.+.. .+ +.++.++.+|.++.+.++++
T Consensus 2 ~vlItGasg~iG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~----~~-~~~~~~~~~Dl~~~~~i~~~ 64 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQ---QGHKVIATGRRQ--ERLQELKD----EL-GDNLYIAQLDVRNRAAIEEM 64 (248)
T ss_pred EEEEECCCchHHHHHHHHHHH---CCCEEEEEECCH--HHHHHHHH----Hh-ccceEEEEecCCCHHHHHHH
Confidence 57888874 578999999964 577888887642 22222211 11 23567799999999988764
No 334
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=25.50 E-value=5.4e+02 Score=31.62 Aligned_cols=70 Identities=10% Similarity=0.028 Sum_probs=44.0
Q ss_pred CCCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 593 PKERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 593 ~~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
..++|||.|. |-.|..+++.|.+. .++..|..++..+..+....+.. ......+.++.||.+|.+.+.++
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~-g~~~~V~~~d~~~~~~~~~~l~~----~~~~~~v~~~~~Dl~d~~~~~~~ 75 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRN-YPDYKIVVLDKLDYCSNLKNLNP----SKSSPNFKFVKGDIASADLVNYL 75 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHh-CCCCEEEEEeCCCccchhhhhhh----cccCCCeEEEECCCCChHHHHHH
Confidence 3578999997 67899999999753 24667777764321111111110 01123577899999998887764
No 335
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=25.35 E-value=1.6e+02 Score=30.95 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=43.7
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|.+ ..+..+++.|.+ .|..|.+++.. .++.+.+.+ .+ +..+.++.+|.+|.+.++++
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~---~G~~v~~~~r~--~~~~~~~~~----~~-~~~~~~~~~D~~~~~~~~~~ 70 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLA---EGARVVIADIK--PARARLAAL----EI-GPAAIAVSLDVTRQDSIDRI 70 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEcCC--HHHHHHHHH----Hh-CCceEEEEccCCCHHHHHHH
Confidence 4678999975 578999999964 57788887753 222222221 11 22467799999999998875
No 336
>PRK09135 pteridine reductase; Provisional
Probab=25.28 E-value=3.4e+02 Score=27.87 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=20.3
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCc
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHE 318 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~ 318 (856)
..+++|.|.+ -.|..++++|.+.+.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~ 31 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY 31 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 4679999975 589999999987654
No 337
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=25.24 E-value=6.9e+02 Score=25.89 Aligned_cols=86 Identities=12% Similarity=0.156 Sum_probs=49.7
Q ss_pred EeCCChhHHHHHHHhhc-cccCCceEEEecCCCHHHHHHcCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCC
Q 003021 336 LSDLPRKQMDKLAENIA-KDLNHIDILSKSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSV 414 (856)
Q Consensus 336 L~d~~~~~~e~l~~~~~-~d~~~~~Vi~~~~~~~e~L~rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~ 414 (856)
-.|++++.++...++.. -...++.++. ++.++.|.. ..+.++++|=.+ .. ....+.++.. .++ +..
T Consensus 63 AIe~~~~a~~~~~~N~~~fg~~n~~vv~--g~Ap~~L~~--~~~~daiFIGGg-~~----i~~ile~~~~--~l~--~gg 129 (187)
T COG2242 63 AIERDEEALELIERNAARFGVDNLEVVE--GDAPEALPD--LPSPDAIFIGGG-GN----IEEILEAAWE--RLK--PGG 129 (187)
T ss_pred EEecCHHHHHHHHHHHHHhCCCcEEEEe--ccchHhhcC--CCCCCEEEECCC-CC----HHHHHHHHHH--HcC--cCC
Confidence 35888888887665531 1123444444 556778874 448998887544 22 3344443333 334 667
Q ss_pred CEEEEEeCcCcHHH----HHhcCC
Q 003021 415 PTIVEVSNPNTCEL----LKSLSG 434 (856)
Q Consensus 415 ~iIaev~d~~~~~~----l~~~g~ 434 (856)
++|+.+...++... ++..|+
T Consensus 130 rlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 130 RLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred eEEEEeecHHHHHHHHHHHHHcCC
Confidence 88887777666532 445554
No 338
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=25.09 E-value=3e+02 Score=26.74 Aligned_cols=78 Identities=13% Similarity=0.252 Sum_probs=41.4
Q ss_pred EEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHcCc
Q 003021 297 IIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAAA 376 (856)
Q Consensus 297 iII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA~v 376 (856)
.+|+|.|..+..+++-....+. .++|+.+++ +... + --.+.+. ...+..+...+
T Consensus 1 L~I~GaG~va~al~~la~~lg~-------------~v~v~d~r~-e~~~--------~--~~~~~~~--~~~~~~~~~~~ 54 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGF-------------RVTVVDPRP-ERFP--------E--ADEVICI--PPDDILEDLEI 54 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTE-------------EEEEEES-C-CC-T--------T--SSEEECS--HHHHHHHHC-S
T ss_pred CEEEeCcHHHHHHHHHHHhCCC-------------EEEEEcCCc-cccC--------C--CCccEec--ChHHHHhccCC
Confidence 4899999999999998877654 566655543 2111 1 1122222 22344466677
Q ss_pred cccCeEEEecCCCCCCcchHHHHHHHHH
Q 003021 377 NKARAIIILPTKGDRYEVDTDAFLSVLA 404 (856)
Q Consensus 377 ~~A~aVIIl~~~~D~~~~Da~~l~~vLA 404 (856)
....+| |++.+. +-|...+..+|.
T Consensus 55 ~~~t~V-v~th~h---~~D~~~L~~~l~ 78 (136)
T PF13478_consen 55 DPNTAV-VMTHDH---ELDAEALEAALA 78 (136)
T ss_dssp -TT-EE-E--S-C---CCHHHHHHHHTT
T ss_pred CCCeEE-EEcCCc---hhHHHHHHHHHc
Confidence 777765 555543 347887777665
No 339
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=24.99 E-value=1.6e+02 Score=30.67 Aligned_cols=67 Identities=10% Similarity=-0.008 Sum_probs=41.4
Q ss_pred CeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
++++|.|.+. .+..+++.|.+ .|..+.++...+.+.......++ .-.+.+++++.+|.++.+.++++
T Consensus 3 k~ilItGas~giG~~la~~l~~---~g~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 70 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAA---RGWSVGINYARDAAAAEETADAV---RAAGGRACVVAGDVANEADVIAM 70 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHHHHHH---HhcCCcEEEEEeccCCHHHHHHH
Confidence 5789999875 78899999964 46666665432221111111111 01133577899999999888764
No 340
>PRK07985 oxidoreductase; Provisional
Probab=24.92 E-value=1.3e+02 Score=32.66 Aligned_cols=69 Identities=10% Similarity=-0.014 Sum_probs=43.1
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+++||.|.++ .+..+++.|.+ .|..|.+.......+..+.+.+.. .-.+.+++++.+|.+|.+.+.++
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~---~G~~Vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~ 118 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYAR---EGADVAISYLPVEEEDAQDVKKII--EECGRKAVLLPGDLSDEKFARSL 118 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH---CCCEEEEecCCcchhhHHHHHHHH--HHcCCeEEEEEccCCCHHHHHHH
Confidence 36899999865 78999999964 577777764321112211221100 01134577899999999888765
No 341
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.92 E-value=8e+02 Score=27.31 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=27.8
Q ss_pred cCCCeEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHH
Q 003021 292 LESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDK 346 (856)
Q Consensus 292 ~~~~HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~ 346 (856)
....-++|.|.|. .|..++.|+.+.+. .+| +.|.+++..++
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-------------~~v-l~Din~~~~~e 77 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-------------KLV-LWDINKQGNEE 77 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-------------eEE-EEeccccchHH
Confidence 3456678899887 78899999987533 344 46766655544
No 342
>PRK09134 short chain dehydrogenase; Provisional
Probab=24.89 E-value=1.9e+02 Score=30.47 Aligned_cols=68 Identities=7% Similarity=0.010 Sum_probs=42.6
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.+||.|.+. .+..+++.|.+ .|..+.++...+.+.......++ ...+.+++++.+|.+|.+.++++
T Consensus 9 ~k~vlItGas~giG~~la~~l~~---~g~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~ 77 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAA---HGFDVAVHYNRSRDEAEALAAEI---RALGRRAVALQADLADEAEVRAL 77 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHHHHHH---HhcCCeEEEEEcCCCCHHHHHHH
Confidence 46789998875 68899999963 56667665442221111111111 01134577899999999988775
No 343
>PRK05854 short chain dehydrogenase; Provisional
Probab=24.88 E-value=1.3e+02 Score=33.13 Aligned_cols=69 Identities=9% Similarity=0.060 Sum_probs=45.9
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|.+. .|..++++|.+ .|..|.+....+ +..++.+.++. ...++.+++++..|-+|.+..+++
T Consensus 14 gk~~lITGas~GIG~~~a~~La~---~G~~Vil~~R~~-~~~~~~~~~l~-~~~~~~~v~~~~~Dl~d~~sv~~~ 83 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAA---AGAEVILPVRNR-AKGEAAVAAIR-TAVPDAKLSLRALDLSSLASVAAL 83 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH---CCCEEEEEeCCH-HHHHHHHHHHH-HhCCCCceEEEEecCCCHHHHHHH
Confidence 46889999876 68899999963 577888877532 11122222211 012345688899999999988876
No 344
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=24.86 E-value=2.9e+02 Score=29.05 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=28.1
Q ss_pred eEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 296 HIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 296 HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
+++|.|.+. .|..++++|.+.+. .|++ .+++++.+++..+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-------------~V~~-~~r~~~~~~~~~~ 42 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-------------RVVI-SSRNEENLEKALK 42 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-------------EEEE-EeCCHHHHHHHHH
Confidence 588999765 89999999988654 4554 5666666655444
No 345
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=24.85 E-value=1.8e+02 Score=30.60 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=31.5
Q ss_pred eEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
-+.|.|.|+.|..+.+.|...++ .|+|-+.++++..+...+
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~-------------eV~igs~r~~~~~~a~a~ 43 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGH-------------EVIIGSSRGPKALAAAAA 43 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCC-------------eEEEecCCChhHHHHHHH
Confidence 36899999999999999999876 566654566666666554
No 346
>PRK09072 short chain dehydrogenase; Provisional
Probab=24.75 E-value=3.3e+02 Score=28.62 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=37.5
Q ss_pred CCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHH
Q 003021 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSY 371 (856)
Q Consensus 294 ~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L 371 (856)
...++|.|. +..|..++++|.+.+. .|++ .+++++.++.+.... .....+.++..|..+.+.+
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~ 68 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA-------------RLLL-VGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGR 68 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEE-EECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHH
Confidence 456889996 4589999999987654 4554 466666666554432 1111344555555554433
No 347
>PRK08339 short chain dehydrogenase; Provisional
Probab=24.70 E-value=3.3e+02 Score=28.91 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=29.3
Q ss_pred CeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 295 ~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
..++|.|.+ ..|..++++|.+.+. .|++ .+++++..+.+.+
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~-------------~V~~-~~r~~~~~~~~~~ 50 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGA-------------DVIL-LSRNEENLKKARE 50 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHH
Confidence 467899976 499999999998654 4554 5777666665544
No 348
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=24.67 E-value=3.1e+02 Score=30.09 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=28.7
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
...++|.|.+ -.|..++++|.+.+. .|++ ..++.+..+.+.+
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~-------------~V~~-~~r~~~~~~~~~~ 48 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGW-------------HVIM-ACRNLKKAEAAAQ 48 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCC-------------EEEE-EECCHHHHHHHHH
Confidence 4568899875 489999999987654 4555 4566655555443
No 349
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.61 E-value=3.3e+02 Score=28.14 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=29.4
Q ss_pred CCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 294 ~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
...++|.|. +..|..+++.|.+.+. .|++ .+++++.++...+
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~-------------~vi~-~~r~~~~~~~~~~ 47 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGA-------------KLAL-IDLNQEKLEEAVA 47 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHH
Confidence 467899997 7799999999987544 4444 5666655555433
No 350
>PLN02572 UDP-sulfoquinovose synthase
Probab=24.59 E-value=1.9e+02 Score=33.74 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=43.4
Q ss_pred CCCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCc--hhhh-------------hhhcccCCCCccCceEEEEEC
Q 003021 593 PKERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPL--DDRK-------------RASNAIGHGKLKNVQVFHKIG 656 (856)
Q Consensus 593 ~~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~--~er~-------------~~l~~~~~~~l~~~~V~~i~G 656 (856)
..++|||.|. |-.|..+++.|.+ .|..|++++.... .+.. +.+... ....+.++.++.|
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~v~~v~~ 120 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSK---RGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRW--KEVSGKEIELYVG 120 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHH---CCCeEEEEeccccccccccccccccccccchHHHHHHH--HHhhCCcceEEEC
Confidence 4567999998 5689999999964 5778888763210 0000 000000 0011224678999
Q ss_pred CCCCHHHHHhc
Q 003021 657 NPLNFETLKDT 667 (856)
Q Consensus 657 D~td~~~L~~a 667 (856)
|-+|.+.++++
T Consensus 121 Dl~d~~~v~~~ 131 (442)
T PLN02572 121 DICDFEFLSEA 131 (442)
T ss_pred CCCCHHHHHHH
Confidence 99999988875
No 351
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=24.56 E-value=3.7e+02 Score=27.75 Aligned_cols=24 Identities=21% Similarity=-0.021 Sum_probs=18.7
Q ss_pred CeEEEEcCC-chHHHHHHHHHhcCc
Q 003021 295 DHIIVCGVN-SHLSFILKQLNKYHE 318 (856)
Q Consensus 295 ~HiII~G~~-~~~~~li~eL~~~~~ 318 (856)
.-++|.|.+ ..|..++++|.+.+.
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~ 28 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF 28 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC
Confidence 356888864 589999999988654
No 352
>PRK07060 short chain dehydrogenase; Provisional
Probab=24.55 E-value=1.3e+02 Score=31.02 Aligned_cols=62 Identities=5% Similarity=-0.119 Sum_probs=42.0
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|. |..+..+++.|.+ .|..|.++...+ ++.+.+.+ .. ...++.+|.++.+.++++
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~---~g~~V~~~~r~~--~~~~~~~~----~~---~~~~~~~D~~~~~~v~~~ 71 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQ---RGARVVAAARNA--AALDRLAG----ET---GCEPLRLDVGDDAAIRAA 71 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH----Hh---CCeEEEecCCCHHHHHHH
Confidence 468999998 4689999999964 477788877632 22222221 11 235688999999887765
No 353
>PRK08265 short chain dehydrogenase; Provisional
Probab=24.53 E-value=3.5e+02 Score=28.54 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=38.3
Q ss_pred CCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|.|. +..|..++++|.+.+. .|++ .+++.+..+++.+... ....++..|.++.+.++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~ 68 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-------------RVAI-VDIDADNGAAVAASLG---ERARFIATDITDDAAIE 68 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHHhC---CeeEEEEecCCCHHHHH
Confidence 457888986 4589999999988654 4554 5666665665544320 12344455555555444
Q ss_pred H
Q 003021 373 R 373 (856)
Q Consensus 373 r 373 (856)
+
T Consensus 69 ~ 69 (261)
T PRK08265 69 R 69 (261)
T ss_pred H
Confidence 3
No 354
>PRK07063 short chain dehydrogenase; Provisional
Probab=24.46 E-value=1.7e+02 Score=30.82 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=44.3
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+. .+..+++.|. ..|..|.+++..+. ..++...++.. ...+.++.++.+|.+|++.++++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~---~~G~~vv~~~r~~~-~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~ 76 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFA---REGAAVALADLDAA-LAERAAAAIAR-DVAGARVLAVPADVTDAASVAAA 76 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHH---HCCCEEEEEeCCHH-HHHHHHHHHHh-ccCCceEEEEEccCCCHHHHHHH
Confidence 46789999864 6889999996 45778888776321 11111111100 01245677899999999888765
No 355
>PRK05717 oxidoreductase; Validated
Probab=24.45 E-value=1.5e+02 Score=31.02 Aligned_cols=64 Identities=8% Similarity=-0.070 Sum_probs=42.7
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|.+ ..|..+++.|.+ .|..|.+++..+ ++...+.+ .+ +.+++++.+|.++.+.++++
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~---~g~~v~~~~~~~--~~~~~~~~----~~-~~~~~~~~~Dl~~~~~~~~~ 74 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIA---EGWQVVLADLDR--ERGSKVAK----AL-GENAWFIAMDVADEAQVAAG 74 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHH---cCCEEEEEcCCH--HHHHHHHH----Hc-CCceEEEEccCCCHHHHHHH
Confidence 4679999985 579999999964 577888876532 22111111 11 23467899999999887664
No 356
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=24.43 E-value=3.3e+02 Score=28.36 Aligned_cols=42 Identities=14% Similarity=0.328 Sum_probs=28.8
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
...++|.|.+ ..|..++++|.+.+. .+++ .+++.+..+.+.+
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~-------------~vvl-~~r~~~~~~~~~~ 51 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA-------------EIII-NDITAERAELAVA 51 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC-------------EEEE-EcCCHHHHHHHHH
Confidence 4568888865 589999999987654 4554 5666655555443
No 357
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=24.41 E-value=1.7e+02 Score=36.03 Aligned_cols=52 Identities=15% Similarity=0.281 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhccccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003021 226 EDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFR 277 (856)
Q Consensus 226 ~dalw~~~~~vt~st~g~gd~T~~gRl~~v~l~l~Gi~~fa~li~~it~~l~ 277 (856)
..++|.++......+...-+....+|++..+-.++++++.+...+-++..+.
T Consensus 383 ~~~~~~~~~~~~~q~~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt 434 (656)
T KOG1052|consen 383 LNCLWLTVGSLLQQGSDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLT 434 (656)
T ss_pred ccchhhhhHHHhccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345533332233333344567789998888888888877777776666555
No 358
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=24.40 E-value=1.5e+02 Score=30.56 Aligned_cols=66 Identities=8% Similarity=-0.038 Sum_probs=43.7
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhh-cccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS-NAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l-~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+ ..+..+++.|.+ .|..|.++...+. +.+.+ .+. .-.+.+++++.+|.++.+.+.++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~---~g~~v~~~~r~~~--~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 72 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAA---DGAKVVIYDSNEE--AAEALAAEL---RAAGGEARVLVFDVSDEAAVRAL 72 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEeCChh--HHHHHHHHH---HhcCCceEEEEccCCCHHHHHHH
Confidence 3679999975 578999999964 4777877776432 21111 111 11134577899999999988765
No 359
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=24.39 E-value=3e+02 Score=28.71 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=28.6
Q ss_pred CCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 294 ~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
...++|.|. |..|..++++|.+.+. .|++ ..++++..+...+
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~-------------~v~~-~~r~~~~~~~~~~ 49 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA-------------AVAI-ADLNQDGANAVAD 49 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------eEEE-EeCChHHHHHHHH
Confidence 456899987 4689999999987654 4554 4565555555443
No 360
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=24.32 E-value=3.5e+02 Score=29.85 Aligned_cols=78 Identities=9% Similarity=0.122 Sum_probs=47.5
Q ss_pred CeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH
Q 003021 295 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER 373 (856)
Q Consensus 295 ~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r 373 (856)
..++|.|. |-.|..++++|...+.. ..|+++ +++....+.+...+.. .+..++.++..+.+.+.+
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g~~-----------~~V~~~-~r~~~~~~~~~~~~~~--~~~~~v~~Dl~d~~~l~~ 70 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNP-----------KKIIIY-SRDELKQWEMQQKFPA--PCLRFFIGDVRDKERLTR 70 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhCCC-----------cEEEEE-cCChhHHHHHHHHhCC--CcEEEEEccCCCHHHHHH
Confidence 35788886 57999999999875420 145554 4443333333322211 246677788888888776
Q ss_pred cCccccCeEEEecC
Q 003021 374 AAANKARAIIILPT 387 (856)
Q Consensus 374 A~v~~A~aVIIl~~ 387 (856)
+ ++..+.||-++.
T Consensus 71 ~-~~~iD~Vih~Ag 83 (324)
T TIGR03589 71 A-LRGVDYVVHAAA 83 (324)
T ss_pred H-HhcCCEEEECcc
Confidence 5 456787766554
No 361
>PRK12939 short chain dehydrogenase; Provisional
Probab=24.22 E-value=1.6e+02 Score=30.39 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=43.5
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|. |..+..+++.|.+ .|..+.++...+ +...+...++. -.+.++..+.+|.++.+.++++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~---~G~~v~~~~r~~-~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~ 74 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAE---AGATVAFNDGLA-AEARELAAALE---AAGGRAHAIAADLADPASVQRF 74 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH---cCCEEEEEeCCH-HHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHH
Confidence 478899987 4689999999964 577788876532 21111111110 1123567799999999988765
No 362
>PRK08309 short chain dehydrogenase; Provisional
Probab=24.20 E-value=3.3e+02 Score=27.56 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=26.5
Q ss_pred eEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHH
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 348 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~ 348 (856)
+++|.|.+..+..++++|.+.+. .|++. .++++..+.+.
T Consensus 2 ~vlVtGGtG~gg~la~~L~~~G~-------------~V~v~-~R~~~~~~~l~ 40 (177)
T PRK08309 2 HALVIGGTGMLKRVSLWLCEKGF-------------HVSVI-ARREVKLENVK 40 (177)
T ss_pred EEEEECcCHHHHHHHHHHHHCcC-------------EEEEE-ECCHHHHHHHH
Confidence 68999987777788889987654 45543 56655555543
No 363
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.20 E-value=1.5e+02 Score=30.65 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=43.1
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEE-cCCCchhhhhhh-cccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEIL-SDVPLDDRKRAS-NAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii-~~~p~~er~~~l-~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.. ..+..+++.|.+ .|..+.++ ...+ ++.+.+ ..+ ...+.++.++.+|.++.+.++++
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~---~g~~v~~~~~r~~--~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 73 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAK---EGAKVVIAYDINE--EAAQELLEEI---KEEGGDAIAVKADVSSEEDVENL 73 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEcCCCH--HHHHHHHHHH---HhcCCeEEEEECCCCCHHHHHHH
Confidence 3689999984 678899999853 47778777 6532 221111 111 01234577899999999988765
No 364
>PLN00016 RNA-binding protein; Provisional
Probab=24.18 E-value=2.5e+02 Score=31.81 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=40.3
Q ss_pred CCCCeEEEE----ec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhccc---CCCCccCceEEEEECCCCCH
Q 003021 592 GPKERILLL----GW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAI---GHGKLKNVQVFHKIGNPLNF 661 (856)
Q Consensus 592 ~~~~~vLI~----Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~---~~~~l~~~~V~~i~GD~td~ 661 (856)
...++|||. |. |-.|..++++|.+ .|.+|+++...+.. ...+... ....+....+.++.||.+|.
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~---~G~~V~~l~R~~~~--~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~ 122 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVK---AGHEVTLFTRGKEP--SQKMKKEPFSRFSELSSAGVKTVWGDPADV 122 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHH---CCCEEEEEecCCcc--hhhhccCchhhhhHhhhcCceEEEecHHHH
Confidence 455789999 76 7799999999964 57789888764321 1111000 00012223467899999873
No 365
>PRK08862 short chain dehydrogenase; Provisional
Probab=24.14 E-value=3.4e+02 Score=28.25 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=30.2
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 294 ~~HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
...++|.|.++ .|..++++|.+.+. .|++ ..++++.++++.+
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~-------------~V~~-~~r~~~~l~~~~~ 47 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA-------------TLIL-CDQDQSALKDTYE 47 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC-------------EEEE-EcCCHHHHHHHHH
Confidence 35789999887 89999999988654 4554 5666666665543
No 366
>PRK07677 short chain dehydrogenase; Provisional
Probab=24.07 E-value=3e+02 Score=28.70 Aligned_cols=39 Identities=10% Similarity=0.250 Sum_probs=26.3
Q ss_pred eEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHH
Q 003021 296 HIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 348 (856)
Q Consensus 296 HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~ 348 (856)
-++|.|.+. .|..++++|.+.+. .|++ .+++.+..+++.
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~-------------~Vi~-~~r~~~~~~~~~ 42 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGA-------------NVVI-TGRTKEKLEEAK 42 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHH
Confidence 467888765 89999999987644 4554 466655555543
No 367
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=24.05 E-value=2.4e+02 Score=28.41 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=20.8
Q ss_pred cCCCeEEEEcCCch-HHHHHHHHHhcC
Q 003021 292 LESDHIIVCGVNSH-LSFILKQLNKYH 317 (856)
Q Consensus 292 ~~~~HiII~G~~~~-~~~li~eL~~~~ 317 (856)
....+++|+|.|+. +..+++-|...+
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g 68 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRN 68 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCC
Confidence 45789999999996 777888887643
No 368
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=24.03 E-value=1.4e+02 Score=32.71 Aligned_cols=68 Identities=9% Similarity=-0.040 Sum_probs=42.0
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCch-hhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLD-DRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~-er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+++||.|. |-.|..+++.|.+ .|..|.++...+.. +....+... .-...+++++.||.++.+.++++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~d~~~~~~~ 74 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLF---RGYTINATVRDPKDRKKTDHLLAL---DGAKERLKLFKADLLDEGSFELA 74 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHH---CCCEEEEEEcCCcchhhHHHHHhc---cCCCCceEEEeCCCCCchHHHHH
Confidence 468999997 5689999999964 57777665432211 111101000 00113567799999999988875
No 369
>PRK07201 short chain dehydrogenase; Provisional
Probab=24.03 E-value=5e+02 Score=31.55 Aligned_cols=111 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred eEEEEec-cccHHHHHHHHhccc--CCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCC------HHHHHh
Q 003021 596 RILLLGW-RPDVVEMIEEYDNYL--GPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLN------FETLKD 666 (856)
Q Consensus 596 ~vLI~Gw-~r~~~~li~eL~~~~--~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td------~~~L~~ 666 (856)
+|+|.|. |-.|..++++| . ..|..|..+...+...+...+.. .....++.++.||.++ .+.+++
T Consensus 2 ~ILVTGatGfIG~~lv~~L---l~~~~g~~V~~l~R~~~~~~~~~~~~----~~~~~~v~~~~~Dl~~~~~~~~~~~~~~ 74 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRL---LDRRREATVHVLVRRQSLSRLEALAA----YWGADRVVPLVGDLTEPGLGLSEADIAE 74 (657)
T ss_pred eEEEeCCccHHHHHHHHHH---HhcCCCCEEEEEECcchHHHHHHHHH----hcCCCcEEEEecccCCccCCcCHHHHHH
Q ss_pred ccccccccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEE
Q 003021 667 TIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLV 727 (856)
Q Consensus 667 a~i~i~~a~~~d~~~~~siIILsd~d~~~~~~~~aDa~~l~t~L~~r~l~~~~g~~~~~II 727 (856)
. . ..| .|+=++..--...+.......|+.....+-+.+.+.+.+ ++|
T Consensus 75 l--~-----~~D-----~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~--~~v 121 (657)
T PRK07201 75 L--G-----DID-----HVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERLQAA--TFH 121 (657)
T ss_pred h--c-----CCC-----EEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhcCCC--eEE
No 370
>PRK07060 short chain dehydrogenase; Provisional
Probab=23.98 E-value=3.3e+02 Score=28.04 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=44.0
Q ss_pred CCeEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|.|. +..|..+++.|.+.+. .|++ ..++.+..+++.... +..++..+.++.+.++
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~-------------~V~~-~~r~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~ 69 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA-------------RVVA-AARNAAALDRLAGET-----GCEPLRLDVGDDAAIR 69 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHHh-----CCeEEEecCCCHHHHH
Confidence 457899998 5699999999987654 4555 466665555544321 3455666666655554
Q ss_pred HcC--ccccCeEEEe
Q 003021 373 RAA--ANKARAIIIL 385 (856)
Q Consensus 373 rA~--v~~A~aVIIl 385 (856)
++- ....+.+|-.
T Consensus 70 ~~~~~~~~~d~vi~~ 84 (245)
T PRK07060 70 AALAAAGAFDGLVNC 84 (245)
T ss_pred HHHHHhCCCCEEEEC
Confidence 432 1245654433
No 371
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=23.86 E-value=1.7e+02 Score=33.58 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHhhhcccccccc----CCcchhHHHHHHHHHH
Q 003021 221 ETQSLEDCLWEAWACLISSSTHLKQ----RTRVERVIGFILAIWG 261 (856)
Q Consensus 221 ~~~s~~dalw~~~~~vt~st~g~gd----~T~~gRl~~v~l~l~G 261 (856)
.+.++.+++..+...+...|.+.|. -++.+|++.+++++.|
T Consensus 345 ~~~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 345 SGYDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILIVLMFIG 389 (390)
T ss_pred cCCCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence 3589999999888888777765553 4467999988888776
No 372
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=23.76 E-value=4.5e+02 Score=28.88 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=32.1
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCC---hhHHHHHHHhh
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP---RKQMDKLAENI 351 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~---~~~~e~l~~~~ 351 (856)
..+++|+|.|-.+..++-.|...+. ..|.|. +++ .+..+.+.+.+
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~g~------------~~i~i~-nRt~~~~~ka~~la~~~ 171 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIEGL------------KEIKLF-NRRDEFFDKALAFAQRV 171 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC------------CEEEEE-eCCccHHHHHHHHHHHh
Confidence 4589999999999999999987544 256664 554 34666666544
No 373
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=23.76 E-value=1.7e+02 Score=30.65 Aligned_cols=67 Identities=7% Similarity=0.122 Sum_probs=43.5
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+++||.|.+ ..+..+++.|.+ .|..|.++...+ ++.+....++ .-.+.+++++.+|.+|.+.++++
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~---~G~~V~~~~r~~-~~~~~~~~~i---~~~~~~~~~~~~Dl~d~~~i~~~ 79 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGE---AGARVVLSARKA-EELEEAAAHL---EALGIDALWIAADVADEADIERL 79 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---cCCEEEEEeCCH-HHHHHHHHHH---HhcCCeEEEEEccCCCHHHHHHH
Confidence 4789999975 478899999964 567787777632 2211111111 01134577899999999998664
No 374
>PRK06197 short chain dehydrogenase; Provisional
Probab=23.76 E-value=1.5e+02 Score=32.26 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=44.4
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhh-hhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRK-RASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~-~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|.+ -.|..++++|.+ .|..|.++...+ ++. +...++. ...++.++.++.+|.+|.+.++++
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~---~G~~vi~~~r~~--~~~~~~~~~l~-~~~~~~~~~~~~~Dl~d~~~v~~~ 85 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAA---KGAHVVLAVRNL--DKGKAAAARIT-AATPGADVTLQELDLTSLASVRAA 85 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHHHH-HhCCCCceEEEECCCCCHHHHHHH
Confidence 4788999985 479999999964 467787776532 221 1111110 012345678899999999988775
No 375
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=23.74 E-value=2.1e+02 Score=31.83 Aligned_cols=66 Identities=5% Similarity=-0.121 Sum_probs=43.8
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
..+|||.|. |-.|..++++|.+ .|..|+++...+. ........+ ..+.++.++.||.++.+.++++
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~---~G~~V~~~~r~~~-~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~ 76 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQ---RGYTVHATLRDPA-KSLHLLSKW----KEGDRLRLFRADLQEEGSFDEA 76 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEeCChH-HHHHHHHhh----ccCCeEEEEECCCCCHHHHHHH
Confidence 468999996 5689999999964 5777777665321 111111111 0124577899999999988876
No 376
>PRK06172 short chain dehydrogenase; Provisional
Probab=23.70 E-value=1.7e+02 Score=30.65 Aligned_cols=67 Identities=7% Similarity=-0.025 Sum_probs=44.2
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+ ..+..+++.|.+ .|..|.+++..+.+ -.+...++ .-.+.++.++.+|.++.+.++++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~---~G~~v~~~~r~~~~-~~~~~~~~---~~~~~~~~~~~~D~~~~~~i~~~ 74 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAR---EGAKVVVADRDAAG-GEETVALI---REAGGEALFVACDVTRDAEVKAL 74 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCHHH-HHHHHHHH---HhcCCceEEEEcCCCCHHHHHHH
Confidence 4688999976 578999999964 57778888764321 11111111 01134578899999999988775
No 377
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=23.69 E-value=7.8e+02 Score=26.91 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=30.0
Q ss_pred eEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHH
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 348 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~ 348 (856)
.|-++|.|..|..+++.|.+.++ .|++ .+++++..+.+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-------------~v~v-~dr~~~~~~~~~ 40 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-------------EVVG-YDVNQEAVDVAG 40 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-------------EEEE-EECCHHHHHHHH
Confidence 37789999999999999987654 4554 577777777654
No 378
>PRK08643 acetoin reductase; Validated
Probab=23.66 E-value=1.6e+02 Score=30.85 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=42.8
Q ss_pred CeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhh-cccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS-NAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l-~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+.++|.|.+. .+..+++.|.+ .|..|.+++..+ ++.+.+ .++. . .+.++.++.+|-++.+.++++
T Consensus 3 k~~lItGas~giG~~la~~l~~---~G~~v~~~~r~~--~~~~~~~~~~~--~-~~~~~~~~~~Dl~~~~~~~~~ 69 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVE---DGFKVAIVDYNE--ETAQAAADKLS--K-DGGKAIAVKADVSDRDQVFAA 69 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHHHH--h-cCCeEEEEECCCCCHHHHHHH
Confidence 5788888875 68899999964 577888887632 221111 1110 0 124567899999999988764
No 379
>PRK12746 short chain dehydrogenase; Provisional
Probab=23.64 E-value=1.9e+02 Score=30.17 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=42.2
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+. .+..+++.|.+ .|..+.++.....+.......++ .-.+.+++++++|.+|.+.+.++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~---~G~~v~i~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~d~~~i~~~ 74 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLAN---DGALVAIHYGRNKQAADETIREI---ESNGGKAFLIEADLNSIDGVKKL 74 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEcCCCHHHHHHHHHHH---HhcCCcEEEEEcCcCCHHHHHHH
Confidence 36889999764 68899999964 46677664322121111111111 01134577899999999988765
No 380
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=23.54 E-value=2e+02 Score=33.59 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCc
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~ 318 (856)
....++|+|+|..|..++..+...+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga 236 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGA 236 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC
Confidence 35579999999999999999987544
No 381
>PLN02240 UDP-glucose 4-epimerase
Probab=23.53 E-value=5.4e+02 Score=28.32 Aligned_cols=69 Identities=10% Similarity=0.037 Sum_probs=43.3
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCc--hhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPL--DDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~--~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|. |-.+..+++.|.+ .|..|++++.... .+....+.... .....++.++.||.++.+.++++
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~---~g~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~l~~~ 76 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLL---AGYKVVVIDNLDNSSEEALRRVKELA--GDLGDNLVFHKVDLRDKEALEKV 76 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCCcchHHHHHHHHHhh--cccCccceEEecCcCCHHHHHHH
Confidence 368999998 5689999999964 4678888864211 11111111100 00122467799999999998775
No 382
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.51 E-value=4.5e+02 Score=30.55 Aligned_cols=23 Identities=13% Similarity=-0.097 Sum_probs=19.2
Q ss_pred eEEEEcCCchHHHHHHHHHhcCc
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~ 318 (856)
+|.|+|.|..|...++-|...++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~ 24 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW 24 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC
Confidence 58999999999998887776554
No 383
>PRK07775 short chain dehydrogenase; Provisional
Probab=23.45 E-value=3.4e+02 Score=28.89 Aligned_cols=25 Identities=12% Similarity=-0.023 Sum_probs=20.1
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCc
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHE 318 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~ 318 (856)
..+++|.|.+ ..|..++++|.+.+.
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~ 35 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGF 35 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 4589999964 589999999987654
No 384
>PRK07825 short chain dehydrogenase; Provisional
Probab=23.44 E-value=1.5e+02 Score=31.40 Aligned_cols=62 Identities=10% Similarity=-0.023 Sum_probs=41.7
Q ss_pred CeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+.++|.|.+ ..|..++++|.+ .|..|.+.... +++.+.+.+ .+. .++++.+|.+|.+.++++
T Consensus 6 ~~ilVtGasggiG~~la~~l~~---~G~~v~~~~r~--~~~~~~~~~----~~~--~~~~~~~D~~~~~~~~~~ 68 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAA---LGARVAIGDLD--EALAKETAA----ELG--LVVGGPLDVTDPASFAAF 68 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCEEEEEECC--HHHHHHHHH----Hhc--cceEEEccCCCHHHHHHH
Confidence 579999986 478899999964 57777777652 232222211 122 356799999999988664
No 385
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=23.40 E-value=1.4e+02 Score=25.48 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=20.4
Q ss_pred eEEEEcCCchHHHHHHHHHhcCc
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~ 318 (856)
+++|+|.|..+..++..|...+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~ 23 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK 23 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc
Confidence 68999999999999999987654
No 386
>PRK08628 short chain dehydrogenase; Provisional
Probab=23.39 E-value=1.7e+02 Score=30.76 Aligned_cols=67 Identities=9% Similarity=0.055 Sum_probs=0.0
Q ss_pred CCCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 593 PKERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 593 ~~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
..+.+||.|.+. .+..++++| ...|..+.++...+... +..+++ .-.+.+++++.+|.++.+.++++
T Consensus 6 ~~~~ilItGasggiG~~la~~l---~~~G~~v~~~~r~~~~~--~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 73 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRL---AEEGAIPVIFGRSAPDD--EFAEEL---RALQPRAEFVQVDLTDDAQCRDA 73 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHH---HHcCCcEEEEcCChhhH--HHHHHH---HhcCCceEEEEccCCCHHHHHHH
No 387
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.39 E-value=3.6e+02 Score=28.23 Aligned_cols=62 Identities=8% Similarity=0.109 Sum_probs=36.7
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|.|.+ ..|..++++|.+.+. .|+++..++++..+.+... +..++..+.++++.++
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~-------------~v~~~~~~~~~~~~~l~~~------~~~~~~~Dl~~~~~~~ 67 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGA-------------KVAVLYNSAENEAKELREK------GVFTIKCDVGNRDQVK 67 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------------EEEEEeCCcHHHHHHHHhC------CCeEEEecCCCHHHHH
Confidence 3457888865 589999999988654 4555444444444443221 3445555655655544
Q ss_pred Hc
Q 003021 373 RA 374 (856)
Q Consensus 373 rA 374 (856)
++
T Consensus 68 ~~ 69 (255)
T PRK06463 68 KS 69 (255)
T ss_pred HH
Confidence 43
No 388
>PRK06180 short chain dehydrogenase; Provisional
Probab=23.35 E-value=1.8e+02 Score=31.17 Aligned_cols=64 Identities=9% Similarity=0.052 Sum_probs=43.5
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|.+ ..|..+++.|.+ .|..|.++...+ ++.+.+.+ ....++..+.+|.+|.+.+.++
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~---~G~~V~~~~r~~--~~~~~l~~-----~~~~~~~~~~~D~~d~~~~~~~ 68 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALA---AGHRVVGTVRSE--AARADFEA-----LHPDRALARLLDVTDFDAIDAV 68 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHh---CcCEEEEEeCCH--HHHHHHHh-----hcCCCeeEEEccCCCHHHHHHH
Confidence 3568999985 478999999953 577888887643 22222221 1123466799999999988765
No 389
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=23.26 E-value=1.1e+02 Score=30.80 Aligned_cols=35 Identities=14% Similarity=0.379 Sum_probs=27.1
Q ss_pred CCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCC
Q 003021 593 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVP 630 (856)
Q Consensus 593 ~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p 630 (856)
..++|+|+|.|..+.+++.+|.+ .|.+|+++...|
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~---~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAK---AGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTT---TCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHh---hCCEEEEEecCC
Confidence 45999999999999999999964 467899988654
No 390
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=23.26 E-value=1.7e+02 Score=30.79 Aligned_cols=64 Identities=11% Similarity=0.181 Sum_probs=43.7
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|.+. .+..+++.|.+ .|..|.+++.. +++.+.+.+ .+ ..++.++++|.++.+.++++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~---~G~~V~~~~r~--~~~~~~~~~----~~-~~~~~~~~~D~~~~~~~~~~ 70 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLA---EGARVAVLERS--AEKLASLRQ----RF-GDHVLVVEGDVTSYADNQRA 70 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH----Hh-CCcceEEEccCCCHHHHHHH
Confidence 46889999865 78899999964 57778887763 233222221 12 22467799999999888765
No 391
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=23.24 E-value=1.2e+02 Score=33.08 Aligned_cols=68 Identities=10% Similarity=0.008 Sum_probs=42.3
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCch-hhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLD-DRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~-er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++|+|.|. |-.|..+++.|.+ .|..|+++...+.. .....+... .-...++.++.||.++.+.+.++
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 73 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQ---RGYTVKATVRDPNDPKKTEHLLAL---DGAKERLHLFKANLLEEGSFDSV 73 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHH---CCCEEEEEEcCCCchhhHHHHHhc---cCCCCceEEEeccccCcchHHHH
Confidence 367999996 6789999999964 47777766542211 111111100 00123567899999998888765
No 392
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.15 E-value=1.7e+02 Score=31.03 Aligned_cols=66 Identities=14% Similarity=-0.013 Sum_probs=42.9
Q ss_pred CCeEEEEec---cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW---RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw---~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|. +..+..++++|. ..|..|.+.+....++..+.+.+ .+.. .++++..|.+|.+..++.
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la---~~G~~v~l~~r~~~~~~~~~~~~----~~~~-~~~~~~~Dv~~~~~i~~~ 75 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQ---EQGAEVVLTGFGRALRLTERIAK----RLPE-PAPVLELDVTNEEHLASL 75 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHH---HCCCEEEEecCccchhHHHHHHH----hcCC-CCcEEeCCCCCHHHHHHH
Confidence 368999996 568999999996 35777877653221222222221 1222 456789999999988765
No 393
>PRK07825 short chain dehydrogenase; Provisional
Probab=23.10 E-value=3.3e+02 Score=28.78 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=37.7
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSY 371 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L 371 (856)
...++|.|.+ ..|..++++|.+.+. .|++ ..++++.++.+.+.. ....++..|-++.+.+
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-------------~v~~-~~r~~~~~~~~~~~~----~~~~~~~~D~~~~~~~ 65 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-------------RVAI-GDLDEALAKETAAEL----GLVVGGPLDVTDPASF 65 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEE-EECCHHHHHHHHHHh----ccceEEEccCCCHHHH
Confidence 3468999975 589999999987654 4444 567776666654432 1244555555555443
No 394
>PRK06123 short chain dehydrogenase; Provisional
Probab=23.08 E-value=1.8e+02 Score=30.17 Aligned_cols=67 Identities=7% Similarity=-0.047 Sum_probs=41.6
Q ss_pred CeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+.+||.|.++ .+..++++|.+ .|..+.+....+.+........+ ...+.+++++.+|.+|.+.++++
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~---~G~~vv~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~Dl~~~~~~~~~ 70 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAE---RGYAVCLNYLRNRDAAEAVVQAI---RRQGGEALAVAADVADEADVLRL 70 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHH---CCCeEEEecCCCHHHHHHHHHHH---HhCCCcEEEEEeccCCHHHHHHH
Confidence 4688999865 68889999964 46666665432221111111111 11134567899999999988876
No 395
>PRK05693 short chain dehydrogenase; Provisional
Probab=23.03 E-value=3.1e+02 Score=29.09 Aligned_cols=59 Identities=7% Similarity=0.092 Sum_probs=37.2
Q ss_pred CeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH
Q 003021 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER 373 (856)
Q Consensus 295 ~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r 373 (856)
..++|.|.+ ..|..++++|.+.+. .|++ .+++.+.++.+... +..++..+.++.+.+++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~------~~~~~~~Dl~~~~~~~~ 61 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY-------------EVWA-TARKAEDVEALAAA------GFTAVQLDVNDGAALAR 61 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHC------CCeEEEeeCCCHHHHHH
Confidence 368899875 589999999987544 4554 45665555554331 45556666666555443
No 396
>PRK12743 oxidoreductase; Provisional
Probab=22.93 E-value=1.9e+02 Score=30.47 Aligned_cols=67 Identities=6% Similarity=-0.055 Sum_probs=42.5
Q ss_pred CeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+.+||.|.+. .+..+++.|.+ .|..|.++...+.+.-.+...++ ...+.+++++.+|-++.+.++++
T Consensus 3 k~vlItGas~giG~~~a~~l~~---~G~~V~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 70 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQ---QGFDIGITWHSDEEGAKETAEEV---RSHGVRAEIRQLDLSDLPEGAQA 70 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCChHHHHHHHHHH---HhcCCceEEEEccCCCHHHHHHH
Confidence 5789999875 68899999964 57778776542222111111111 11234677899999999887765
No 397
>PRK06057 short chain dehydrogenase; Provisional
Probab=22.93 E-value=3.1e+02 Score=28.71 Aligned_cols=60 Identities=8% Similarity=0.066 Sum_probs=36.3
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|.|.+ ..|..++++|.+.+. .|++ .++++...+...+.. +..++..+.++.+.++
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~-------------~v~~-~~r~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~ 67 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGA-------------TVVV-GDIDPEAGKAAADEV-----GGLFVPTDVTDEDAVN 67 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-------------EEEE-EeCCHHHHHHHHHHc-----CCcEEEeeCCCHHHHH
Confidence 4578999985 589999999987654 4554 466655555544321 1234444555544433
No 398
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=22.89 E-value=1.8e+02 Score=29.99 Aligned_cols=67 Identities=9% Similarity=-0.010 Sum_probs=43.6
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+ ..+..+++.|.+ .|..|.++...+... .....++ .-.+.++.++.+|.+|.+.++++
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~---~g~~V~~~~r~~~~~-~~~~~~l---~~~~~~~~~~~~Dl~~~~~~~~~ 73 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAA---DGAEVIVVDICGDDA-AATAELV---EAAGGKARARQVDVRDRAALKAA 73 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHH---CCCEEEEEeCCHHHH-HHHHHHH---HhcCCeEEEEECCCCCHHHHHHH
Confidence 4678999964 578999999964 467788887642211 1111111 01123477899999999988875
No 399
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.88 E-value=3.5e+02 Score=28.67 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=20.4
Q ss_pred CCeEEEEcCC---chHHHHHHHHHhcCc
Q 003021 294 SDHIIVCGVN---SHLSFILKQLNKYHE 318 (856)
Q Consensus 294 ~~HiII~G~~---~~~~~li~eL~~~~~ 318 (856)
...++|.|.+ ..|..++++|.+.+.
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~ 34 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGA 34 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCC
Confidence 3578999985 799999999998654
No 400
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=22.81 E-value=1.3e+02 Score=30.53 Aligned_cols=65 Identities=8% Similarity=-0.023 Sum_probs=41.8
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcc-cCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNA-IGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~-~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
..+++|+|. |..+..+++.|.+ .|..+++++.. .++.+.+.+ +. ...+.. ....|..+.+.+.++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~---~g~~V~l~~R~--~~~~~~l~~~l~--~~~~~~--~~~~~~~~~~~~~~~ 94 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAR---EGARVVLVGRD--LERAQKAADSLR--ARFGEG--VGAVETSDDAARAAA 94 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEcCC--HHHHHHHHHHHH--hhcCCc--EEEeeCCCHHHHHHH
Confidence 478999998 8999999999964 46688888763 344333322 10 011233 356677888777665
No 401
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=22.69 E-value=1.4e+02 Score=34.25 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=43.3
Q ss_pred CCCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhh-hhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 593 PKERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKR-ASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 593 ~~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~-~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
...+|+|.|. |..|..++++|.+ .|..|+.+...+..-... ...+. ....+ .+.++.||.+|.+.|.++
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~---~G~~V~~l~R~~~~~~~~~~~~~~-~~~~~--~v~~v~~Dl~d~~~l~~~ 129 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVR---RGYNVVAVAREKSGIRGKNGKEDT-KKELP--GAEVVFGDVTDADSLRKV 129 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEEechhhccccchhhHH-hhhcC--CceEEEeeCCCHHHHHHH
Confidence 3457999998 6789999999964 577788877532110000 00000 00122 456799999999999876
No 402
>PRK06701 short chain dehydrogenase; Provisional
Probab=22.62 E-value=1.7e+02 Score=31.66 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred CeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+++||.|. |..+..+++.| ...|..|.++...+..........+ ...+.++.++.+|.++.+.++++
T Consensus 47 k~iLItGasggIG~~la~~l---~~~G~~V~l~~r~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 114 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLF---AKEGADIAIVYLDEHEDANETKQRV---EKEGVKCLLIPGDVSDEAFCKDA 114 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHH---HHCCCEEEEEeCCcchHHHHHHHHH---HhcCCeEEEEEccCCCHHHHHHH
No 403
>PRK07814 short chain dehydrogenase; Provisional
Probab=22.55 E-value=1.8e+02 Score=30.82 Aligned_cols=67 Identities=7% Similarity=0.028 Sum_probs=44.4
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.+||.|.+. .+..+++.|.+ .|..|.++...+. ...+....+ .-.+.+++++.+|.++++.++++
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~---~G~~Vi~~~r~~~-~~~~~~~~l---~~~~~~~~~~~~D~~~~~~~~~~ 77 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAE---AGADVLIAARTES-QLDEVAEQI---RAAGRRAHVVAADLAHPEATAGL 77 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCHH-HHHHHHHHH---HhcCCcEEEEEccCCCHHHHHHH
Confidence 46789999875 78899999963 5778888876421 111111111 01134577899999999998765
No 404
>PRK07035 short chain dehydrogenase; Provisional
Probab=22.47 E-value=3.8e+02 Score=27.85 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=29.0
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 294 ~~HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
.+.++|.|.+. .|..++++|.+.+. .|++ .+++.+..+.+.+
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~-------------~Vi~-~~r~~~~~~~~~~ 50 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGA-------------HVIV-SSRKLDGCQAVAD 50 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHH
Confidence 45689999765 89999999987654 4555 4666555555444
No 405
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=22.39 E-value=6e+02 Score=28.66 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=28.1
Q ss_pred CCCeEEEEeccccHHHHHHHHhcccCCCc-eEEEEcCC
Q 003021 593 PKERILLLGWRPDVVEMIEEYDNYLGPGS-VLEILSDV 629 (856)
Q Consensus 593 ~~~~vLI~Gw~r~~~~li~eL~~~~~~gs-~v~Ii~~~ 629 (856)
...+|+|+|-|..|..+++.|... |. .+++++..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a---Gvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA---GVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCC
Confidence 358899999999999999999653 54 78888863
No 406
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=22.39 E-value=1.8e+02 Score=30.34 Aligned_cols=66 Identities=9% Similarity=0.005 Sum_probs=42.9
Q ss_pred CeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+.++|.|.+ ..+..++++|.+ .|..+.++...+ +..++...++ .-.+.++..+.+|-+|.+.++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~---~G~~v~~~~r~~-~~~~~~~~~l---~~~~~~~~~~~~Dl~~~~~i~~~ 67 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAK---DGFAVAVADLNE-ETAKETAKEI---NQAGGKAVAYKLDVSDKDQVFSA 67 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCCH-HHHHHHHHHH---HhcCCeEEEEEcCCCCHHHHHHH
Confidence 358899975 578899999964 577888887632 1111111111 01134577899999999988775
No 407
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=22.37 E-value=3.6e+02 Score=27.21 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=20.7
Q ss_pred eEEEEcCCchHHHHHHHHHhcCc
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~ 318 (856)
||+|+|.|-.|..+++.|...+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv 23 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV 23 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC
Confidence 68999999999999999988655
No 408
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=22.30 E-value=1e+03 Score=25.84 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=73.1
Q ss_pred eEEEEcCCch-----HHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEE-ecCCC-H
Q 003021 296 HIIVCGVNSH-----LSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILS-KSLTL-T 368 (856)
Q Consensus 296 HiII~G~~~~-----~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~-~~~~~-~ 368 (856)
.+|+.+|-+. ...+++++.+++. +-|++.|.+.++.+++.+... ..|.+.+. ..|+. .
T Consensus 93 p~vlm~Y~N~i~~~G~e~F~~~~~~aGv-------------dgviipDLP~ee~~~~~~~~~--~~gi~~I~lv~PtT~~ 157 (263)
T CHL00200 93 PIVIFTYYNPVLHYGINKFIKKISQAGV-------------KGLIIPDLPYEESDYLISVCN--LYNIELILLIAPTSSK 157 (263)
T ss_pred CEEEEecccHHHHhCHHHHHHHHHHcCC-------------eEEEecCCCHHHHHHHHHHHH--HcCCCEEEEECCCCCH
Confidence 5678888763 2347777777655 446667888777776554331 12665555 45665 4
Q ss_pred HHHHHcCccccC-eEEEecCCC--CCCcchHHHHHHHH-HcCCCCCCCCCCEEE--EEeCcCcHHHHHhcCCCeEEeh
Q 003021 369 KSYERAAANKAR-AIIILPTKG--DRYEVDTDAFLSVL-ALQPIPKMNSVPTIV--EVSNPNTCELLKSLSGLKVEPV 440 (856)
Q Consensus 369 e~L~rA~v~~A~-aVIIl~~~~--D~~~~Da~~l~~vL-Alr~l~~~~~~~iIa--ev~d~~~~~~l~~~g~~~Vi~~ 440 (856)
+.+++. ++.|+ -|.+++..+ .........+...+ .+|+ ..+.|+++ -+++++....+..+|+|-||.=
T Consensus 158 eri~~i-~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~---~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 158 SRIQKI-ARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKK---MTNKPIILGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred HHHHHH-HHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHH---hcCCCEEEECCcCCHHHHHHHHhcCCCEEEEC
Confidence 555554 56666 444433332 11111112222222 2333 24778877 7888999988998988866643
No 409
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=22.23 E-value=3.9e+02 Score=27.35 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=16.9
Q ss_pred EEEEcC-CchHHHHHHHHHhcCc
Q 003021 297 IIVCGV-NSHLSFILKQLNKYHE 318 (856)
Q Consensus 297 iII~G~-~~~~~~li~eL~~~~~ 318 (856)
++|.|. +..|..++++|.+.+.
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~ 25 (242)
T TIGR01829 3 ALVTGGMGGIGTAICQRLAKDGY 25 (242)
T ss_pred EEEECCCChHHHHHHHHHHHCCC
Confidence 567774 5689999999987654
No 410
>PRK05854 short chain dehydrogenase; Provisional
Probab=22.21 E-value=4e+02 Score=29.24 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 293 ESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 293 ~~~HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
...++||.|.+. .|..++++|.+.+. .|++ ..++.+..++..+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~-------------~Vil-~~R~~~~~~~~~~ 56 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA-------------EVIL-PVRNRAKGEAAVA 56 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHH
Confidence 356789999775 89999999987654 4555 4566555555433
No 411
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=22.17 E-value=5.8e+02 Score=28.21 Aligned_cols=62 Identities=13% Similarity=0.018 Sum_probs=41.2
Q ss_pred CeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCC-CHHHHHhc
Q 003021 595 ERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPL-NFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~t-d~~~L~~a 667 (856)
.+|+|.|. |-.|..+++.|.+. .|.+|+.++..+ ++... ..+...+.++.||.+ +.+.+.++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~--~~~~V~~~~r~~--~~~~~-------~~~~~~~~~~~~Dl~~~~~~~~~~ 65 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILET--TDWEVYGMDMQT--DRLGD-------LVNHPRMHFFEGDITINKEWIEYH 65 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhC--CCCeEEEEeCcH--HHHHH-------hccCCCeEEEeCCCCCCHHHHHHH
Confidence 36999998 88999999999642 357788776422 21111 112234778999998 66777664
No 412
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=22.12 E-value=1.8e+02 Score=30.68 Aligned_cols=67 Identities=7% Similarity=0.011 Sum_probs=44.1
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+. .+..++++|. ..|..+.+++..+. +-.+....+ .-.+.+++++.+|.++++.++++
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~---~~G~~vv~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 77 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYA---KAGATIVFNDINQE-LVDKGLAAY---RELGIEAHGYVCDVTDEDGVQAM 77 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHH---HCCCeEEEEeCCHH-HHHHHHHHH---HhcCCceEEEEcCCCCHHHHHHH
Confidence 46789999875 6889999996 35777888765322 111111111 01134678899999999998876
No 413
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=22.03 E-value=3.9e+02 Score=31.78 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=35.4
Q ss_pred HHHHHHHHHhccccccc-C--CCeEEEEcCCc--hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHh
Q 003021 276 FRNNMQKLREGAQMQVL-E--SDHIIVCGVNS--HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN 350 (856)
Q Consensus 276 l~~~~~~lr~G~~~~v~-~--~~HiII~G~~~--~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~ 350 (856)
+.+..++++.|. .+.. . =.|+|++|-|- -|...+-+...... .....+.++...|+..+..+.+.
T Consensus 76 ~~~~~~~i~~~~-~~~~~~~~~~~vV~IGIGGS~LGp~~~~~al~~~~---------~~~~~~~f~~n~Dp~~l~~~l~~ 145 (486)
T PF00342_consen 76 MKEFAERIRSGA-WKGRTGKPITDVVVIGIGGSSLGPRALYEALKPYF---------SNPPRLHFLDNVDPADLARLLER 145 (486)
T ss_dssp HHHHHHHHHTTH-SBHTTSSB-SEEEEE--GGGTHHHHHHHHHTGGGT---------TSSCEEEEESSSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-HccccCCceeEEEEEecchhhHHHHHHHHHhhhhc---------ccceEEEEeccCChHHHHHHHhc
Confidence 333444556664 2222 2 37999999874 56666666544322 11245666666788888776654
No 414
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=22.01 E-value=3.3e+02 Score=32.48 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=33.5
Q ss_pred HHHHHHHhhhhhhcCCCCCHHHHHHHHHHhhhcccccccc------C-CcchhHHHHHHHHHHHHHHHHHHH
Q 003021 206 SFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQ------R-TRVERVIGFILAIWGILFYSRLLS 270 (856)
Q Consensus 206 ~iv~~g~~l~~~~eg~~~s~~dalw~~~~~vt~st~g~gd------~-T~~gRl~~v~l~l~Gi~~fa~li~ 270 (856)
+..+++++.|+. .+.+++||++.+.+.++..|..-.| . .+.-.+++.++++.|=.-|....-
T Consensus 183 ~~t~l~~~~~~~---~gm~~~dAi~hs~Sa~~ngGFS~~~~Si~~f~~~~~i~~i~~~liI~GgigF~v~~~ 251 (499)
T COG0168 183 LLTILLALAFIL---AGMPLFDAIFHSMSAFNNGGFSTHDASIGYFNGSPLINLIITILIILGGIGFPVHYR 251 (499)
T ss_pred HHHHHHHHHHHh---ccCCHHHHHHHHHHHhhcCCCCCCcchhhhcccChhHHHHHHHHHHHhcCChHHHHH
Confidence 334444444433 2579999999888777766553333 1 233444544544444444444333
No 415
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=21.95 E-value=1.9e+02 Score=29.55 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=28.3
Q ss_pred eEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
.|-|+|-|..|..++-.|.+.++ .|+ -.|.+++.++.+.+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-------------~V~-g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-------------QVI-GVDIDEEKVEALNN 41 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-------------EEE-EE-S-HHHHHHHHT
T ss_pred EEEEECCCcchHHHHHHHHhCCC-------------EEE-EEeCChHHHHHHhh
Confidence 47789999999999999998765 344 35888888888765
No 416
>PF14544 DUF4443: Domain of unknown function (DUF4443); PDB: 2P8T_A.
Probab=21.95 E-value=1.8e+02 Score=27.25 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=32.5
Q ss_pred cEEEEecCCCCCCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCc-------------eecCCCEEEEEecCC
Q 003021 470 NIFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDE-------------TLQPTDKILFIAPIH 529 (856)
Q Consensus 470 ~E~~v~~~p~l~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~-------------vI~~gD~LivIa~~~ 529 (856)
.-+.+...|++.+..++|-..|+. ...+|.+.++|++++.|+.+- ..++||.+++...++
T Consensus 15 ~ai~~k~~~~~k~ielRDeAIR~GA~GAlIl~~Kngk~vfPed~r~L~~~~p~la~~l~~~~egD~IIIt~ae~ 88 (108)
T PF14544_consen 15 YAIVVKNPPEFKSIELRDEAIRFGACGALILVFKNGKLVFPEDERPLKEYYPELAEKLESLSEGDLIIITWAED 88 (108)
T ss_dssp EEEEESS-----HHHHHHHHHHTT-SEEEEEEEETTEEE-TTT--BGGGT-HHHHHH--S--TT-EEEEEE-SS
T ss_pred EEEEecCCchhchHHHHHHHHHcCCCceEEEEEeCCcEECCCCcchHHHHhHHHHHHhhCccCCCEEEEEccCC
Confidence 345555666777777888667766 567777888999876554421 246889777766653
No 417
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=21.92 E-value=2.4e+02 Score=30.17 Aligned_cols=43 Identities=23% Similarity=0.141 Sum_probs=30.3
Q ss_pred eEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
.|-|+|.|..|..+++.|.+.+.. ..-|.+.+++++..+.+.+
T Consensus 4 ~I~iIG~G~mG~~la~~l~~~g~~-----------~~~v~v~~r~~~~~~~~~~ 46 (267)
T PRK11880 4 KIGFIGGGNMASAIIGGLLASGVP-----------AKDIIVSDPSPEKRAALAE 46 (267)
T ss_pred EEEEEechHHHHHHHHHHHhCCCC-----------cceEEEEcCCHHHHHHHHH
Confidence 488999999999999999876420 1223446777776666554
No 418
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.90 E-value=1.8e+02 Score=30.13 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=44.1
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+. .+..+++.|.+ .|..|.++...+.. ..+...++ .-.+.++.++.+|.++.+.++++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~---~G~~Vi~~~r~~~~-~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 74 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAK---EGVNVGLLARTEEN-LKAVAEEV---EAYGVKVVIATADVSDYEEVTAA 74 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHH---CCCEEEEEeCCHHH-HHHHHHHH---HHhCCeEEEEECCCCCHHHHHHH
Confidence 46789999774 68899999963 57788887764321 11111111 01134677899999999988775
No 419
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=21.85 E-value=3e+02 Score=30.26 Aligned_cols=67 Identities=10% Similarity=0.154 Sum_probs=44.1
Q ss_pred eEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHcC
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAA 375 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA~ 375 (856)
+|-|+|.|..|..+++.|.+.++ .|++ .+++++..+.+.+. +... ..+.+++.+ .
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-------------~V~~-~dr~~~~~~~l~~~------g~~~----~~s~~~~~~-~ 56 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-------------DCVG-YDHDQDAVKAMKED------RTTG----VANLRELSQ-R 56 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-------------EEEE-EECCHHHHHHHHHc------CCcc----cCCHHHHHh-h
Confidence 57899999999999999988655 4554 58888877776542 2111 123344433 2
Q ss_pred ccccCeEEEecC
Q 003021 376 ANKARAIIILPT 387 (856)
Q Consensus 376 v~~A~aVIIl~~ 387 (856)
++.++.|+++.+
T Consensus 57 ~~~~dvIi~~vp 68 (298)
T TIGR00872 57 LSAPRVVWVMVP 68 (298)
T ss_pred cCCCCEEEEEcC
Confidence 467897776655
No 420
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=21.83 E-value=4.9e+02 Score=22.82 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=14.0
Q ss_pred CeEEEEcCC---chHHHHHHHHHhcC
Q 003021 295 DHIIVCGVN---SHLSFILKQLNKYH 317 (856)
Q Consensus 295 ~HiII~G~~---~~~~~li~eL~~~~ 317 (856)
-++|++++. ..+..++++|...+
T Consensus 44 ~d~iiid~~~~~~~~~~~~~~i~~~~ 69 (112)
T PF00072_consen 44 PDLIIIDLELPDGDGLELLEQIRQIN 69 (112)
T ss_dssp ESEEEEESSSSSSBHHHHHHHHHHHT
T ss_pred ceEEEEEeeecccccccccccccccc
Confidence 456676654 35666677776554
No 421
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=21.81 E-value=2e+02 Score=27.18 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=19.5
Q ss_pred eEEEEcC-CchHHHHHHHHHhcC
Q 003021 296 HIIVCGV-NSHLSFILKQLNKYH 317 (856)
Q Consensus 296 HiII~G~-~~~~~~li~eL~~~~ 317 (856)
+|+|.|+ |+.|..+++.+.+..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~ 24 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESP 24 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHST
T ss_pred EEEEECCCCHHHHHHHHHHHhcC
Confidence 5899999 999999999998843
No 422
>PRK08339 short chain dehydrogenase; Provisional
Probab=21.79 E-value=1.7e+02 Score=31.04 Aligned_cols=67 Identities=15% Similarity=0.089 Sum_probs=44.0
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhc-ccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASN-AIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~-~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.+||-|.++ .+..+++.|.+ .|..|.+.+.. .++.+.+. ++. ...+.++.++.+|.+|.+.++++
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~---~G~~V~~~~r~--~~~~~~~~~~~~--~~~~~~~~~~~~Dv~~~~~i~~~ 76 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLAR---AGADVILLSRN--EENLKKAREKIK--SESNVDVSYIVADLTKREDLERT 76 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHHHHH--hhcCCceEEEEecCCCHHHHHHH
Confidence 36789999864 79999999964 57788877653 22222111 110 11234577899999999988775
No 423
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.79 E-value=2.2e+02 Score=32.99 Aligned_cols=143 Identities=12% Similarity=0.112 Sum_probs=75.1
Q ss_pred CCCeEEE---EcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeC--CChhHHHHHHHhhccccCCceEEEecCCC
Q 003021 293 ESDHIIV---CGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSD--LPRKQMDKLAENIAKDLNHIDILSKSLTL 367 (856)
Q Consensus 293 ~~~HiII---~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d--~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~ 367 (856)
.+++..+ +|-+..+...+++|.+++. +++++.- .+.+.+.+..+.....+++..++.++...
T Consensus 138 ~~~~l~v~aavg~~~~~~~~v~~lv~aGv-------------DvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T 204 (404)
T PRK06843 138 LNNKLRVGAAVSIDIDTIERVEELVKAHV-------------DILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVT 204 (404)
T ss_pred hhcCeEEEEEEeCCHHHHHHHHHHHhcCC-------------CEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCC
Confidence 3555555 4555667788999998765 4555322 12334444444333345567888888555
Q ss_pred HHHHHHcCccccCeEEEecCCCC--------CC-cchHHHHHHHHHcCCCCCCCCCCEEE--EEeCcCcHHHHHhcCCCe
Q 003021 368 TKSYERAAANKARAIIILPTKGD--------RY-EVDTDAFLSVLALQPIPKMNSVPTIV--EVSNPNTCELLKSLSGLK 436 (856)
Q Consensus 368 ~e~L~rA~v~~A~aVIIl~~~~D--------~~-~~Da~~l~~vLAlr~l~~~~~~~iIa--ev~d~~~~~~l~~~g~~~ 436 (856)
.+.-+++--.-|++|.+-...+. .. ..+...+ ..+.++.+..++|+|| -++++......-.+|++-
T Consensus 205 ~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai---~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~a 281 (404)
T PRK06843 205 KEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAI---CDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADS 281 (404)
T ss_pred HHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHH---HHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence 44333332234776654222110 00 0123322 1112221124589998 577776665555678876
Q ss_pred EEehHHHHHHHHHHHHccCC
Q 003021 437 VEPVENVASKLFVQCSRQKG 456 (856)
Q Consensus 437 Vi~~~~i~~~lLaq~~~~Pg 456 (856)
|. +|+.++.+-..||
T Consensus 282 Vm-----vGs~~agt~Espg 296 (404)
T PRK06843 282 VM-----IGNLFAGTKESPS 296 (404)
T ss_pred EE-----EcceeeeeecCCC
Confidence 65 4666666666664
No 424
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=21.70 E-value=3.4e+02 Score=27.68 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=16.4
Q ss_pred EEEEcC-CchHHHHHHHHHhcCc
Q 003021 297 IIVCGV-NSHLSFILKQLNKYHE 318 (856)
Q Consensus 297 iII~G~-~~~~~~li~eL~~~~~ 318 (856)
++|.|- |..|..++++|.+.+.
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~ 23 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA 23 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC
Confidence 466775 4688999999987654
No 425
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=21.67 E-value=3.2e+02 Score=29.28 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=43.2
Q ss_pred eEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCC-----hhHHHHHHHhhccccCCceEEEecCCCHH
Q 003021 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP-----RKQMDKLAENIAKDLNHIDILSKSLTLTK 369 (856)
Q Consensus 296 HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~-----~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e 369 (856)
+|+|.|. |-.|..++++|.+.+.. ..|+++ +.. .+.++.+. ...+..++.++.++.+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~-----------~~v~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~ 63 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPD-----------AEVIVL-DKLTYAGNLENLADLE-----DNPRYRFVKGDIGDRE 63 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCC-----------CEEEEe-cCCCcchhhhhhhhhc-----cCCCcEEEEcCCcCHH
Confidence 4788886 67999999999876421 135544 321 11222211 1124566777777777
Q ss_pred HHHHcCccc--cCeEEEecC
Q 003021 370 SYERAAANK--ARAIIILPT 387 (856)
Q Consensus 370 ~L~rA~v~~--A~aVIIl~~ 387 (856)
.+.++ ++. ++.||-++.
T Consensus 64 ~~~~~-~~~~~~d~vi~~a~ 82 (317)
T TIGR01181 64 LVSRL-FTEHQPDAVVHFAA 82 (317)
T ss_pred HHHHH-HhhcCCCEEEEccc
Confidence 77665 333 787665554
No 426
>PRK06198 short chain dehydrogenase; Provisional
Probab=21.57 E-value=4.4e+02 Score=27.49 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=19.5
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCc
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHE 318 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~ 318 (856)
...++|.|.+ ..|..++++|.+.+.
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~ 31 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGA 31 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC
Confidence 4568899965 589999999987654
No 427
>PRK07831 short chain dehydrogenase; Provisional
Probab=21.57 E-value=3.8e+02 Score=28.17 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=28.9
Q ss_pred CCCeEEEEcC-C-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHH
Q 003021 293 ESDHIIVCGV-N-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 348 (856)
Q Consensus 293 ~~~HiII~G~-~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~ 348 (856)
....++|.|. | ..|..++++|.+.+. .|++ .+++++.++...
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~-------------~V~~-~~~~~~~~~~~~ 59 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA-------------RVVI-SDIHERRLGETA 59 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC-------------EEEE-EeCCHHHHHHHH
Confidence 3567899997 4 599999999987654 4544 566555555443
No 428
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.53 E-value=1.7e+02 Score=30.33 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=43.5
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhh-hhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKR-ASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~-~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|. |..+..+++.|.+ .|..|.+++..+ ++.+ ...++ .-.+.+++.+..|.++.+.++++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~---~G~~vi~~~r~~--~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 72 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQ---KGAKLALIDLNQ--EKLEEAVAEC---GALGTEVRGYAANVTDEEDVEAT 72 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHHH---HhcCCceEEEEcCCCCHHHHHHH
Confidence 468999998 7789999999964 467777776532 2211 11111 01134567799999998887654
No 429
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=21.53 E-value=2.4e+02 Score=33.40 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCchHHHHHHHHHhcCc
Q 003021 292 LESDHIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 292 ~~~~HiII~G~~~~~~~li~eL~~~~~ 318 (856)
.....++|+|+|..|..+++.+...+.
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga 278 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGA 278 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 456689999999999999999987544
No 430
>PRK07109 short chain dehydrogenase; Provisional
Probab=21.53 E-value=1.6e+02 Score=32.83 Aligned_cols=66 Identities=9% Similarity=0.163 Sum_probs=44.3
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhh-cccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS-NAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l-~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|.+ ..+..+++.|.+ .|..|.+++.. +++.+.+ .++ .-.+.++.++.+|.+|.+.++++
T Consensus 8 ~k~vlITGas~gIG~~la~~la~---~G~~Vvl~~R~--~~~l~~~~~~l---~~~g~~~~~v~~Dv~d~~~v~~~ 75 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFAR---RGAKVVLLARG--EEGLEALAAEI---RAAGGEALAVVADVADAEAVQAA 75 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECC--HHHHHHHHHHH---HHcCCcEEEEEecCCCHHHHHHH
Confidence 4678999985 478999999963 57788888763 2222211 111 01134677899999999998875
No 431
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.53 E-value=1.8e+02 Score=30.04 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=0.0
Q ss_pred CCCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCc-eEEEEECCCCCHHHHHhc
Q 003021 593 PKERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNV-QVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 593 ~~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~-~V~~i~GD~td~~~L~~a 667 (856)
..++++|.|. |..+..+++.| ...|..|.++.. .+++.+.+.. .+... .++++.+|-++.+.++++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l---~~~G~~V~~~~r--~~~~~~~~~~----~~~~~~~~~~~~~Dl~~~~~~~~~ 71 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFA---LKEGAQVCINSR--NENKLKRMKK----TLSKYGNIHYVVGDVSSTESARNV 71 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHH---HHCCCEEEEEeC--CHHHHHHHHH----HHHhcCCeEEEECCCCCHHHHHHH
No 432
>PRK06482 short chain dehydrogenase; Provisional
Probab=21.47 E-value=4.1e+02 Score=28.16 Aligned_cols=75 Identities=9% Similarity=0.119 Sum_probs=45.6
Q ss_pred CeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHH
Q 003021 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYER 373 (856)
Q Consensus 295 ~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~r 373 (856)
..++|.|.+ ..|..++++|.+.+. .|++ ..++++.++.+..... .+..++..+.++.+.+++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~-------------~v~~-~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~ 65 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD-------------RVAA-TVRRPDALDDLKARYG---DRLWVLQLDVTDSAAVRA 65 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHhcc---CceEEEEccCCCHHHHHH
Confidence 568999964 699999999987654 3444 4566666666544321 145566667666665554
Q ss_pred cC------ccccCeEEEec
Q 003021 374 AA------ANKARAIIILP 386 (856)
Q Consensus 374 A~------v~~A~aVIIl~ 386 (856)
+- ....+.||-++
T Consensus 66 ~~~~~~~~~~~id~vi~~a 84 (276)
T PRK06482 66 VVDRAFAALGRIDVVVSNA 84 (276)
T ss_pred HHHHHHHHcCCCCEEEECC
Confidence 31 23457555443
No 433
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=21.37 E-value=1.1e+03 Score=25.77 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=31.1
Q ss_pred eEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
+|-|+|.|..|..+++.|.+.++ .+++ .+.+++..+.+.+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-------------~v~v-~dr~~~~~~~~~~ 41 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-------------EVVG-YDRNPEAVEALAE 41 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-------------eEEE-EECCHHHHHHHHH
Confidence 47899999999999999988755 4554 5777777776643
No 434
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=21.31 E-value=4.7e+02 Score=29.01 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=43.0
Q ss_pred eEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecC--C--CHHHH
Q 003021 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSL--T--LTKSY 371 (856)
Q Consensus 296 HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~--~--~~e~L 371 (856)
.|.|+|.|..|..+.-.|.++++ +|+++ -+++. .+.+.+. |+.+....+ . ....-
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~-------------~V~~~-~R~~~-~~~l~~~------GL~i~~~~~~~~~~~~~~~ 60 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGH-------------DVTLL-VRSRR-LEALKKK------GLRIEDEGGNFTTPVVAAT 60 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCC-------------eEEEE-ecHHH-HHHHHhC------CeEEecCCCcccccccccc
Confidence 47899999999999999998764 45554 34443 5555542 666555444 1 11222
Q ss_pred HHcCccccCeEEEecCCC
Q 003021 372 ERAAANKARAIIILPTKG 389 (856)
Q Consensus 372 ~rA~v~~A~aVIIl~~~~ 389 (856)
.......+|-|| ++.+.
T Consensus 61 ~~~~~~~~Dlvi-v~vKa 77 (307)
T COG1893 61 DAEALGPADLVI-VTVKA 77 (307)
T ss_pred ChhhcCCCCEEE-EEecc
Confidence 223344788544 44543
No 435
>PLN02494 adenosylhomocysteinase
Probab=21.30 E-value=2.3e+02 Score=33.60 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhcCc
Q 003021 293 ESDHIIVCGVNSHLSFILKQLNKYHE 318 (856)
Q Consensus 293 ~~~HiII~G~~~~~~~li~eL~~~~~ 318 (856)
....++|+|+|..|..+++.+...+.
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga 278 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGA 278 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 35678999999999999999976543
No 436
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=21.27 E-value=3.7e+02 Score=28.49 Aligned_cols=65 Identities=11% Similarity=0.116 Sum_probs=36.6
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|.|.+ ..|..++++|.+.+. .|++ .+++.+..+.+.+.+........++..+.++.+.+.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~ 75 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA-------------KVAI-LDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLE 75 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 4568888875 589999999987654 4555 466555555544432111012334445555544433
No 437
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=21.16 E-value=4e+02 Score=27.99 Aligned_cols=42 Identities=10% Similarity=0.157 Sum_probs=30.2
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHH
Q 003021 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (856)
Q Consensus 294 ~~HiII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~ 349 (856)
...++|.|.+. .|..++++|.+.+. .|++ .+++++..+.+.+
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~-------------~V~~-~~r~~~~~~~~~~ 48 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGA-------------RVAV-LERSAEKLASLRQ 48 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHH
Confidence 45789999765 89999999987654 4554 5666666666554
No 438
>PRK07576 short chain dehydrogenase; Provisional
Probab=21.15 E-value=1.8e+02 Score=30.81 Aligned_cols=67 Identities=6% Similarity=0.131 Sum_probs=43.6
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+ ..+..++++|.+ .|..|.+++..+.+. .+...++. . .+.+++++.+|.++.+.++++
T Consensus 9 ~k~ilItGasggIG~~la~~l~~---~G~~V~~~~r~~~~~-~~~~~~~~--~-~~~~~~~~~~Dv~~~~~i~~~ 76 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFAR---AGANVAVASRSQEKV-DAAVAQLQ--Q-AGPEGLGVSADVRDYAAVEAA 76 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCHHHH-HHHHHHHH--H-hCCceEEEECCCCCHHHHHHH
Confidence 4789999985 578899999963 577888887643211 11111110 1 123457789999999988765
No 439
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.12 E-value=3.9e+02 Score=29.17 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=20.1
Q ss_pred CCCeEEEEcCCc-hHHHHHHHHHhcCc
Q 003021 293 ESDHIIVCGVNS-HLSFILKQLNKYHE 318 (856)
Q Consensus 293 ~~~HiII~G~~~-~~~~li~eL~~~~~ 318 (856)
....+||.|.+. .|..++++|.+.+.
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga 37 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGA 37 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC
Confidence 345678888765 89999999988654
No 440
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=21.09 E-value=9.7e+02 Score=27.84 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=17.5
Q ss_pred CCeEEEEcCCchHHHHHHHHHh
Q 003021 294 SDHIIVCGVNSHLSFILKQLNK 315 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~ 315 (856)
..+++|+|.|+.+..+ .++..
T Consensus 124 ~rrvLIIGag~~~~~L-~~l~~ 144 (442)
T TIGR03013 124 KRRILVLGTGPRAREI-ARLRR 144 (442)
T ss_pred CCcEEEEECCHHHHHH-HHHHH
Confidence 4579999999999999 77654
No 441
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.05 E-value=4.5e+02 Score=27.15 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=18.7
Q ss_pred CeEEEEcCC-chHHHHHHHHHhcCc
Q 003021 295 DHIIVCGVN-SHLSFILKQLNKYHE 318 (856)
Q Consensus 295 ~HiII~G~~-~~~~~li~eL~~~~~ 318 (856)
..++|.|.+ ..|..+++.|.+.+.
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~ 30 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGA 30 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 457888855 699999999987654
No 442
>PRK07774 short chain dehydrogenase; Provisional
Probab=21.05 E-value=1.7e+02 Score=30.36 Aligned_cols=67 Identities=9% Similarity=-0.016 Sum_probs=43.0
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|. |..+..+++.|.+ .|..|.+++..+.. .....+++. -....++++.+|.++.+.++++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~---~g~~vi~~~r~~~~-~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~ 73 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAR---EGASVVVADINAEG-AERVAKQIV---ADGGTAIAVQVDVSDPDSAKAM 73 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCHHH-HHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHH
Confidence 367999998 5689999999964 57788888763211 111111110 0122457789999999987764
No 443
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=21.05 E-value=2.4e+02 Score=31.19 Aligned_cols=69 Identities=12% Similarity=0.049 Sum_probs=44.3
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCch---hhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLD---DRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~---er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+++||.|. |-.|..++++|.+ .|.+|+++...+.. ++.+.+.+ .....+.++.++.||.+|.+.++++
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLS---KGYEVHGIIRRSSNFNTQRLDHIYI--DPHPNKARMKLHYGDLSDASSLRRW 78 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHH---CCCEEEEEecccccccccchhhhcc--ccccccCceEEEEecCCCHHHHHHH
Confidence 367999998 5689999999964 57788887653211 11111110 0001134578899999999988775
No 444
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.01 E-value=4.7e+02 Score=26.99 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=19.7
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHhcCc
Q 003021 294 SDHIIVCGVNS-HLSFILKQLNKYHE 318 (856)
Q Consensus 294 ~~HiII~G~~~-~~~~li~eL~~~~~ 318 (856)
...++|.|.+. .|..++++|.+.+.
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~ 31 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS 31 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC
Confidence 35788888664 99999999987654
No 445
>PRK08219 short chain dehydrogenase; Provisional
Probab=20.98 E-value=1.9e+02 Score=29.44 Aligned_cols=61 Identities=13% Similarity=-0.003 Sum_probs=40.7
Q ss_pred CeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
++++|.|.+ ..+..++++|.+. ..|.++...+ +..+.+.+ ..+ .++++.||.+|.+.++++
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~----~~V~~~~r~~--~~~~~~~~----~~~--~~~~~~~D~~~~~~~~~~ 65 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT----HTLLLGGRPA--ERLDELAA----ELP--GATPFPVDLTDPEAIAAA 65 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh----CCEEEEeCCH--HHHHHHHH----Hhc--cceEEecCCCCHHHHHHH
Confidence 578998875 5788999999643 4577777632 22222221 122 356799999999999875
No 446
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=20.95 E-value=2.7e+02 Score=32.43 Aligned_cols=42 Identities=10% Similarity=0.083 Sum_probs=30.6
Q ss_pred cCCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHH
Q 003021 292 LESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKL 347 (856)
Q Consensus 292 ~~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l 347 (856)
...+.++|+|+|..|..++.-+...+. .|++ .|.++...+..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-------------~ViV-~d~d~~R~~~A 241 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-------------RVIV-TEVDPICALQA 241 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-------------EEEE-EECChhhHHHH
Confidence 346789999999999999998876543 4444 57766555544
No 447
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=20.93 E-value=3.8e+02 Score=27.68 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=34.1
Q ss_pred eEEEEcC-CchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHH
Q 003021 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTK 369 (856)
Q Consensus 296 HiII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e 369 (856)
.++|.|. |..|..++++|.+.+. .|++ .+++.+..+.+...+...-..+.++..+-.+.+
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~-------------~v~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 63 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGA-------------NVVV-NDLGEAGAEAAAKVATDAGGSVIYLVADVTKED 63 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 4788885 5699999999987654 4554 466655555544322111012344445555544
No 448
>PRK03612 spermidine synthase; Provisional
Probab=20.88 E-value=6.1e+02 Score=30.40 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=38.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcc------cCCCCccCceEEEEECCCCCHHHHHh
Q 003021 593 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNA------IGHGKLKNVQVFHKIGNPLNFETLKD 666 (856)
Q Consensus 593 ~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~------~~~~~l~~~~V~~i~GD~td~~~L~~ 666 (856)
.+++|+++|.|.- .+++++.++ ++..+++.+|- +++..+...+ .....+.+-+++.++||+.+ .+++
T Consensus 297 ~~~rVL~IG~G~G--~~~~~ll~~-~~v~~v~~VEi--d~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~--~l~~ 369 (521)
T PRK03612 297 RPRRVLVLGGGDG--LALREVLKY-PDVEQVTLVDL--DPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN--WLRK 369 (521)
T ss_pred CCCeEEEEcCCcc--HHHHHHHhC-CCcCeEEEEEC--CHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH--HHHh
Confidence 4689999999954 244555443 23368898886 3333333222 11112344567889999864 4544
No 449
>PRK05650 short chain dehydrogenase; Provisional
Probab=20.85 E-value=2e+02 Score=30.49 Aligned_cols=65 Identities=9% Similarity=0.089 Sum_probs=42.3
Q ss_pred eEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 596 RILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 596 ~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+++|.|.+ ..+..++++|.+ .|..|.++...+ ++..+.+.++ .-.+.++.++.+|.++.+.+.++
T Consensus 2 ~vlVtGasggIG~~la~~l~~---~g~~V~~~~r~~-~~~~~~~~~l---~~~~~~~~~~~~D~~~~~~~~~~ 67 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAR---EGWRLALADVNE-EGGEETLKLL---REAGGDGFYQRCDVRDYSQLTAL 67 (270)
T ss_pred EEEEecCCChHHHHHHHHHHH---CCCEEEEEeCCH-HHHHHHHHHH---HhcCCceEEEEccCCCHHHHHHH
Confidence 68888875 578999999964 577788776532 2222222221 01134567899999999888765
No 450
>PRK10750 potassium transporter; Provisional
Probab=20.70 E-value=4.3e+02 Score=31.39 Aligned_cols=33 Identities=6% Similarity=0.024 Sum_probs=21.4
Q ss_pred HHHHHHHhhhhhhcCCCCCHHHHHHHHHHhhhcccc
Q 003021 206 SFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSST 241 (856)
Q Consensus 206 ~iv~~g~~l~~~~eg~~~s~~dalw~~~~~vt~st~ 241 (856)
.+.+++.++++.. +.+++||+..+++.+.+.|.
T Consensus 191 ~lT~~~~~ll~~~---Gm~~fdAi~ha~saisTgGF 223 (483)
T PRK10750 191 LLTVACALALWFA---GMDAFDAIGHSFSTIAIGGF 223 (483)
T ss_pred HHHHHHHHHHHHc---CCcHHHHHHHHHHHHhccCc
Confidence 4444554555443 68999999977766655544
No 451
>PRK09291 short chain dehydrogenase; Provisional
Probab=20.63 E-value=1.6e+02 Score=30.79 Aligned_cols=66 Identities=11% Similarity=-0.039 Sum_probs=42.6
Q ss_pred CeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+++||.|.+ ..|..+++.|.+ .|..++++...+ +..+.+.+. ..-.+.++..+.+|.+|.+.++++
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~---~G~~v~~~~r~~--~~~~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~ 69 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLAR---KGHNVIAGVQIA--PQVTALRAE--AARRGLALRVEKLDLTDAIDRAQA 69 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH--HHhcCCcceEEEeeCCCHHHHHHH
Confidence 578999985 578899999963 577777766532 222222110 011123467799999999999876
No 452
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=20.61 E-value=2.2e+02 Score=29.91 Aligned_cols=68 Identities=9% Similarity=0.031 Sum_probs=42.5
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+. .+..+++.|.+ .|..+++......+.-.....++ .-.+.++.++..|.+|.+.+++.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~---~G~~vvi~~~~~~~~~~~~~~~l---~~~~~~~~~~~~Dl~~~~~i~~~ 75 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGK---EKAKVVINYRSDEEEANDVAEEI---KKAGGEAIAVKGDVTVESDVVNL 75 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHHHHHH---HHcCCeEEEEEecCCCHHHHHHH
Confidence 46889998775 68999999964 56777776542211111111111 01134577899999999987764
No 453
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=20.55 E-value=1.3e+02 Score=30.39 Aligned_cols=36 Identities=8% Similarity=0.117 Sum_probs=29.8
Q ss_pred CCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCc
Q 003021 593 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPL 631 (856)
Q Consensus 593 ~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~ 631 (856)
..+++.|+|+|+.+..+++.|..+ |..|...+..+.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~~~~ 70 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF---GMRVIGYDRSPK 70 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT---T-EEEEEESSCH
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC---CceeEEecccCC
Confidence 468999999999999999999754 778888887654
No 454
>PRK07102 short chain dehydrogenase; Provisional
Probab=20.51 E-value=1.8e+02 Score=30.15 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=0.0
Q ss_pred CeEEEEe-ccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcc---CceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLG-WRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLK---NVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~G-w~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~---~~~V~~i~GD~td~~~L~~a 667 (856)
++++|.| .|..+..+++.| ...|..|.+++. .+++.+.+.+ .+. +.+++++.+|.++.+.+++.
T Consensus 2 ~~vlItGas~giG~~~a~~l---~~~G~~Vi~~~r--~~~~~~~~~~----~~~~~~~~~~~~~~~Dl~~~~~~~~~ 69 (243)
T PRK07102 2 KKILIIGATSDIARACARRY---AAAGARLYLAAR--DVERLERLAD----DLRARGAVAVSTHELDILDTASHAAF 69 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHH---HhcCCEEEEEeC--CHHHHHHHHH----HHHHhcCCeEEEEecCCCChHHHHHH
No 455
>PRK08618 ornithine cyclodeaminase; Validated
Probab=20.49 E-value=6e+02 Score=28.29 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=32.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhh
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENI 351 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~ 351 (856)
..++.|+|.|.++...+..+..... -..|.| .+++++..+++.+.+
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~-----------~~~v~v-~~r~~~~a~~~~~~~ 172 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRD-----------IERVRV-YSRTFEKAYAFAQEI 172 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCC-----------ccEEEE-ECCCHHHHHHHHHHH
Confidence 4579999999999988887764321 124554 577777777776644
No 456
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=20.45 E-value=1.8e+02 Score=30.44 Aligned_cols=68 Identities=4% Similarity=-0.023 Sum_probs=43.2
Q ss_pred CeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+.+||.|.+. .+..+++.|.+ .|..|.+++..+. .......++. ....+.+++++.+|.++.+.++++
T Consensus 3 k~ilItG~~~~IG~~la~~l~~---~g~~vi~~~r~~~-~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~i~~~ 71 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAE---EGYRVAVADINSE-KAANVAQEIN-AEYGEGMAYGFGADATSEQSVLAL 71 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHH---CCCEEEEEECCHH-HHHHHHHHHH-HhcCCceeEEEEccCCCHHHHHHH
Confidence 5689999874 68899999964 5778888875321 1111111110 011124578899999999988765
No 457
>PLN02253 xanthoxin dehydrogenase
Probab=20.43 E-value=2.2e+02 Score=30.33 Aligned_cols=66 Identities=12% Similarity=0.012 Sum_probs=0.0
Q ss_pred CCCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccC-ceEEEEECCCCCHHHHHhc
Q 003021 593 PKERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKN-VQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 593 ~~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~-~~V~~i~GD~td~~~L~~a 667 (856)
..+.+||.|.+. .+..++++| ...|..|.+++. .++..+.+.+ .+.. .+++++.+|.+|.+.++++
T Consensus 17 ~~k~~lItGas~gIG~~la~~l---~~~G~~v~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~Dl~d~~~~~~~ 84 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLF---HKHGAKVCIVDL--QDDLGQNVCD----SLGGEPNVCFFHCDVTVEDDVSRA 84 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHH---HHcCCEEEEEeC--CHHHHHHHHH----HhcCCCceEEEEeecCCHHHHHHH
No 458
>PRK12827 short chain dehydrogenase; Provisional
Probab=20.39 E-value=1.6e+02 Score=30.41 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=43.0
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCC--chhhhhhhc-ccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVP--LDDRKRASN-AIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p--~~er~~~l~-~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+. .+..++++|.+ .|..++++.... .++..+.+. +. .-.+.+++++.+|.++.+.++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~---~g~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 77 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAA---DGADVIVLDIHPMRGRAEADAVAAGI---EAAGGKALGLAFDVRDFAATRAA 77 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCeEEEEcCcccccHHHHHHHHHHH---HhcCCcEEEEEccCCCHHHHHHH
Confidence 36789998764 78899999964 577787765421 112211111 11 01134577899999999988875
No 459
>PRK06196 oxidoreductase; Provisional
Probab=20.38 E-value=3.3e+02 Score=29.78 Aligned_cols=62 Identities=11% Similarity=0.080 Sum_probs=38.0
Q ss_pred CCeEEEEcCC-chHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE 372 (856)
Q Consensus 294 ~~HiII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~ 372 (856)
...++|.|.+ -.|..++++|.+.+. .|++ ..++.+..++..+.. .++.++..|-++.+.++
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~-------------~Vv~-~~R~~~~~~~~~~~l----~~v~~~~~Dl~d~~~v~ 87 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA-------------HVIV-PARRPDVAREALAGI----DGVEVVMLDLADLESVR 87 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHHh----hhCeEEEccCCCHHHHH
Confidence 3568899975 589999999988654 4554 466665555544321 13445555655554444
Q ss_pred H
Q 003021 373 R 373 (856)
Q Consensus 373 r 373 (856)
+
T Consensus 88 ~ 88 (315)
T PRK06196 88 A 88 (315)
T ss_pred H
Confidence 3
No 460
>PRK08589 short chain dehydrogenase; Validated
Probab=20.38 E-value=2.1e+02 Score=30.56 Aligned_cols=66 Identities=9% Similarity=-0.021 Sum_probs=44.1
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+++||.|.++ .+..+++.|.+ .|..|.++... ++..+...++ .-.+.++.++.+|.++.+.++++
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~---~G~~vi~~~r~--~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 72 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQ---EGAYVLAVDIA--EAVSETVDKI---KSNGGKAKAYHVDISDEQQVKDF 72 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCc--HHHHHHHHHH---HhcCCeEEEEEeecCCHHHHHHH
Confidence 46899999865 78999999963 57788888753 2222222221 01134577899999999888765
No 461
>cd06575 PASTA_Pbp2x-like_2 PASTA domain of PBP2x-like proteins, second repeat. Penicillin-binding proteins (PBPs) are the major targets for beta-lactam antibiotics, like penicillins and cephalosporins. Beta-lactam antibiotics specifically inhibit transpeptidase activity by acylating the active site serine. PBPs catalyze key steps in the synthesis of the peptidoglycan, such as the interconnecting of glycan chains (polymers of N-glucosamine and N-acetylmuramic acid residues) and the cross-linking (transpeptidation) of short stem peptides, which are attached to glycan chains. Peptidoglycan is essential in cell division and protects bacteria from osmotic shock and lysis. PBP2x is one of the two monofunctional high molecular mass PBPs in Streptococcus pneumoniae and has been seen as the primary PBP target in beta-lactam-resistant strains. The PASTA domain is found at the C-termini of several PBPs and bacterial serine/threonine kinases. The name PASTA is derived from PBP and Serine/Threonine
Probab=20.37 E-value=2.2e+02 Score=21.64 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=32.0
Q ss_pred CCCCCCCCHHHHHccCC--ceEEEEEEECCEE-EECCCCCceecCCCEEEEE
Q 003021 477 FPNLAGIKYRQLRRGFQ--EAVVCGLYRNGKI-YFHPNDDETLQPTDKILFI 525 (856)
Q Consensus 477 ~p~l~G~tf~el~~~~~--~aivIGI~r~G~~-~lnP~~d~vI~~gD~LivI 525 (856)
.|.+.|+++.++...+. +.. +.....|.+ .-+|.+...+.+|+.+.+.
T Consensus 2 vp~~~g~~~~~a~~~l~~~g~~-~~~~~~g~v~~q~p~~g~~v~~~~~v~l~ 52 (54)
T cd06575 2 MPDLTGWSKRDALKLLELLGLK-VKFSGSGYVVSQSIAPGTKVKKGTTITVT 52 (54)
T ss_pred CCCcCCCCHHHHHHHHHHCCCe-EEEeeceEEEEecCCCCCCCCCCCEEEEE
Confidence 47789999999866554 322 223334553 3578888888889887653
No 462
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.30 E-value=2.6e+02 Score=28.98 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=41.7
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.+||.|.+ ..+..+++.|.+ .|..+.++..... ++.+.+.. .+. .++.++.+|.++++.++++
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~---~G~~vv~~~~~~~-~~~~~~~~----~~~-~~~~~~~~D~~~~~~~~~~ 70 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAR---EGARVVVNYHQSE-DAAEALAD----ELG-DRAIALQADVTDREQVQAM 70 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHH---CCCeEEEEcCCCH-HHHHHHHH----HhC-CceEEEEcCCCCHHHHHHH
Confidence 3678898876 478899999954 5667776543222 22222211 121 3577899999999988765
No 463
>PRK06953 short chain dehydrogenase; Provisional
Probab=20.28 E-value=1.7e+02 Score=29.96 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=40.9
Q ss_pred CeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 595 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 595 ~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
+.++|.|.+ ..+..++++|. ..|..+.++...+ +..+.+. ...++++.+|.++.+.++++
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~---~~G~~v~~~~r~~--~~~~~~~--------~~~~~~~~~D~~~~~~v~~~ 62 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYR---ADGWRVIATARDA--AALAALQ--------ALGAEALALDVADPASVAGL 62 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHH---hCCCEEEEEECCH--HHHHHHH--------hccceEEEecCCCHHHHHHH
Confidence 357888865 46889999996 4578888887532 2222221 12345799999999998875
No 464
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=20.28 E-value=2.3e+02 Score=30.92 Aligned_cols=71 Identities=17% Similarity=0.125 Sum_probs=43.4
Q ss_pred cCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHcCccccC
Q 003021 301 GVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAAANKAR 380 (856)
Q Consensus 301 G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA~v~~A~ 380 (856)
|.|-.|..|+++|.+.++. ..|.++............. ......++.+|-.+.+.+.+| ++.++
T Consensus 5 gsGflG~~iv~~Ll~~g~~-----------~~Vr~~d~~~~~~~~~~~~----~~~~~~~~~~Di~d~~~l~~a-~~g~d 68 (280)
T PF01073_consen 5 GSGFLGSHIVRQLLERGYI-----------YEVRVLDRSPPPKFLKDLQ----KSGVKEYIQGDITDPESLEEA-LEGVD 68 (280)
T ss_pred CCcHHHHHHHHHHHHCCCc-----------eEEEEcccccccccchhhh----cccceeEEEeccccHHHHHHH-hcCCc
Confidence 4677999999999987631 1354432222211111111 122334788888888898886 67889
Q ss_pred eEEEecC
Q 003021 381 AIIILPT 387 (856)
Q Consensus 381 aVIIl~~ 387 (856)
.|+-++.
T Consensus 69 ~V~H~Aa 75 (280)
T PF01073_consen 69 VVFHTAA 75 (280)
T ss_pred eEEEeCc
Confidence 7776654
No 465
>PRK06196 oxidoreductase; Provisional
Probab=20.26 E-value=1.7e+02 Score=32.00 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=42.7
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|.+ ..|..++++|.+ .|..|.++...+ ++.+...+ .+.+ ++++.+|.+|.+.++++
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~---~G~~Vv~~~R~~--~~~~~~~~----~l~~--v~~~~~Dl~d~~~v~~~ 89 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQ---AGAHVIVPARRP--DVAREALA----GIDG--VEVVMLDLADLESVRAF 89 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH----Hhhh--CeEEEccCCCHHHHHHH
Confidence 3689999985 478999999964 577888877632 22222111 1222 56799999999988765
No 466
>PRK05867 short chain dehydrogenase; Provisional
Probab=20.23 E-value=2e+02 Score=30.19 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=43.7
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.+||.|.+ ..+..+++.|.+ .|..|.+....+ +..++...++ .-.+.++.++.+|.++.+.++++
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~---~G~~V~~~~r~~-~~~~~~~~~l---~~~~~~~~~~~~D~~~~~~~~~~ 76 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVE---AGAQVAIAARHL-DALEKLADEI---GTSGGKVVPVCCDVSQHQQVTSM 76 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEcCCH-HHHHHHHHHH---HhcCCeEEEEEccCCCHHHHHHH
Confidence 4678999985 579999999964 577787776532 2212111111 01124567899999999988775
No 467
>PRK09072 short chain dehydrogenase; Provisional
Probab=20.21 E-value=2.2e+02 Score=29.94 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=43.6
Q ss_pred CCeEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhh-cccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS-NAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~-r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l-~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|.+ ..|..+++.|.+ .|..|.+++.. +++.+.+ .++ .. +.+++++.+|.+|.+.+++.
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~---~G~~V~~~~r~--~~~~~~~~~~~---~~-~~~~~~~~~D~~d~~~~~~~ 71 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAA---AGARLLLVGRN--AEKLEALAARL---PY-PGRHRWVVADLTSEAGREAV 71 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEECC--HHHHHHHHHHH---hc-CCceEEEEccCCCHHHHHHH
Confidence 4679999975 578999999963 57788888763 2222222 111 11 23677899999999887764
No 468
>PRK05875 short chain dehydrogenase; Provisional
Probab=20.21 E-value=2e+02 Score=30.58 Aligned_cols=69 Identities=12% Similarity=0.010 Sum_probs=43.7
Q ss_pred CCeEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw-~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+++||.|. |..+..+++.|.+ .|..|.++...+. ...+...++.. .....++.++.+|.++++.++++
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~---~G~~V~~~~r~~~-~~~~~~~~l~~-~~~~~~~~~~~~Dl~~~~~~~~~ 76 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVA---AGAAVMIVGRNPD-KLAAAAEEIEA-LKGAGAVRYEPADVTDEDQVARA 76 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CCCeEEEEeCCHH-HHHHHHHHHHh-ccCCCceEEEEcCCCCHHHHHHH
Confidence 478999997 5689999999964 5778888775321 11111111100 00123567799999999887764
No 469
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=20.19 E-value=1.9e+02 Score=23.88 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=29.7
Q ss_pred CCCCHHHHHccCCceEEEEEEECCEEEECCCC---CceecCCCEEEEEec
Q 003021 481 AGIKYRQLRRGFQEAVVCGLYRNGKIYFHPND---DETLQPTDKILFIAP 527 (856)
Q Consensus 481 ~G~tf~el~~~~~~aivIGI~r~G~~~lnP~~---d~vI~~gD~LivIa~ 527 (856)
.|.|+.|+...+.----+++..||++ .|.. ++.|++||++-++-.
T Consensus 14 ~~~tl~~ll~~l~~~~~~~v~vN~~~--v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 14 DGATVADALAAYGARPPFAVAVNGDF--VARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred CCCcHHHHHHhhCCCCCeEEEECCEE--cCchhcccccCCCCCEEEEEee
Confidence 36788887654331122456668884 5544 789999999988753
No 470
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=20.19 E-value=2.3e+02 Score=31.07 Aligned_cols=66 Identities=6% Similarity=0.000 Sum_probs=44.1
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhh-cccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS-NAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l-~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.++++|.|.+. .|..++++|.+ .|..|.++... +++.+.+ .++ ...+.++.++.+|-+|.+.++++
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~---~G~~V~~~~r~--~~~~~~~~~~l---~~~~~~~~~~~~Dl~~~~~v~~~ 73 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAK---RGWHVIMACRN--LKKAEAAAQEL---GIPPDSYTIIHIDLGDLDSVRRF 73 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHH---CCCEEEEEECC--HHHHHHHHHHh---hccCCceEEEEecCCCHHHHHHH
Confidence 46799999864 68899999964 57778887652 2222221 221 11234577899999999988765
No 471
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=20.10 E-value=1.1e+03 Score=27.86 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHhc
Q 003021 294 SDHIIVCGVNSHLSFILKQLNKY 316 (856)
Q Consensus 294 ~~HiII~G~~~~~~~li~eL~~~ 316 (856)
..+++|+|.|+.+..+++.+...
T Consensus 146 ~rrvLIIGaG~~a~~l~~~L~~~ 168 (476)
T PRK15204 146 KKKTIILGSGQNARGAYSALQSE 168 (476)
T ss_pred CCeEEEEECCHHHHHHHHHHHhC
Confidence 46799999999999999999764
No 472
>PRK07478 short chain dehydrogenase; Provisional
Probab=20.04 E-value=2e+02 Score=30.14 Aligned_cols=67 Identities=7% Similarity=-0.002 Sum_probs=43.7
Q ss_pred CCeEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhc
Q 003021 594 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 667 (856)
Q Consensus 594 ~~~vLI~Gw~r-~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a 667 (856)
.+.++|.|.++ .+..+++.|.+ .|..|.++...+. +..+...++. -.+.++.++.+|.++.+.++++
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~---~G~~v~~~~r~~~-~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~ 73 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAR---EGAKVVVGARRQA-ELDQLVAEIR---AEGGEAVALAGDVRDEAYAKAL 73 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH---CCCEEEEEeCCHH-HHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHH
Confidence 36789999865 68999999963 5777888775321 2111111110 1133577899999999988765
Done!