BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003024
(856 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WTX|A Chain A, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|B Chain B, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|C Chain C, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|D Chain D, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
Length = 474
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/405 (27%), Positives = 207/405 (51%), Gaps = 26/405 (6%)
Query: 144 LTKFYHGFCKQHLWPLFHYMLPFSATHGGRFDRSLWEAYVSANKIFSQRVIEVINPEDDY 203
L ++Y+ F LWP FHY L +F R W+ Y+ N + + +++ ++ +DD
Sbjct: 73 LDEYYNQFSNAVLWPAFHYRLDLV-----QFQRPAWDGYLRVNALLADKLLPLLQ-DDDI 126
Query: 204 VWIHDYHLMVLPXXXXXXXXXXXMGFFLHSPFPSSEIYRTLPVREEILKALLNADLIGFH 263
+WIHDYHL+ +GFFLH PFP+ EI+ LP + +L+ L + DL+GF
Sbjct: 127 IWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQ 186
Query: 264 TFDYARHFLSCCSRMLGLEYQSKRGYIGLEYYGRTVGIKIMPVGIHMGQI--ESVLRLAD 321
T + FL C S + + +S + + +G+ ++ P+GI +I ++ L
Sbjct: 187 TENDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAKQAAGPLPP 243
Query: 322 KDWRVQELKQQFEGKTVLLGVDDMDIFKGVDLKLLAMEHLLKQHPKWQGRAVLVQIANPA 381
K + +LK + + + V+ +D KG+ + LA E LL+++P+ G+ QIA +
Sbjct: 244 K---LAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTS 300
Query: 382 RGRGKDLEEIQAEIHATCKRINETFGRPGYEPVVFIDKPVTLSERAAYYTIAECVVVTAV 441
RG + ++I+ ++ RIN +G+ G+ P+ ++++ + ++ +VT +
Sbjct: 301 RGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPL 360
Query: 442 RDGMNLTPYEYIVCRQGVXXXXXXXXXXAPKKSMLVVSEFIGCSPSLSGAIRVNPWNIEA 501
RDGMNL EY+ + +LV+S+F G + L+ A+ VNP++ +
Sbjct: 361 RDGMNLVAKEYVAAQDPA------------NPGVLVLSQFAGAANELTSALIVNPYDRDE 408
Query: 502 TAEAMHEAIQMNEAEKQLRHEKHYRYVSTHDVAYWARSFFQDMER 546
A A+ A+ M+ AE+ RH + + +D+ +W F D+++
Sbjct: 409 VAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQ 453
>pdb|1UQU|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQU|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQT|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose.
pdb|1UQT|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose
Length = 482
Score = 194 bits (492), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/405 (27%), Positives = 207/405 (51%), Gaps = 26/405 (6%)
Query: 144 LTKFYHGFCKQHLWPLFHYMLPFSATHGGRFDRSLWEAYVSANKIFSQRVIEVINPEDDY 203
L ++Y+ F LWP FHY L +F R W+ Y+ N + + +++ ++ +DD
Sbjct: 73 LDEYYNQFSNAVLWPAFHYRLDLV-----QFQRPAWDGYLRVNALLADKLLPLLQ-DDDI 126
Query: 204 VWIHDYHLMVLPXXXXXXXXXXXMGFFLHSPFPSSEIYRTLPVREEILKALLNADLIGFH 263
+WIHDYHL+ +GFFLH PFP+ EI+ LP + +L+ L + DL+GF
Sbjct: 127 IWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQ 186
Query: 264 TFDYARHFLSCCSRMLGLEYQSKRGYIGLEYYGRTVGIKIMPVGIHMGQI--ESVLRLAD 321
T + FL C S + + +S + + +G+ ++ P+GI +I ++ L
Sbjct: 187 TENDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAKQAAGPLPP 243
Query: 322 KDWRVQELKQQFEGKTVLLGVDDMDIFKGVDLKLLAMEHLLKQHPKWQGRAVLVQIANPA 381
K + +LK + + + V+ +D KG+ + LA E LL+++P+ G+ QIA +
Sbjct: 244 K---LAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTS 300
Query: 382 RGRGKDLEEIQAEIHATCKRINETFGRPGYEPVVFIDKPVTLSERAAYYTIAECVVVTAV 441
RG + ++I+ ++ RIN +G+ G+ P+ ++++ + ++ +VT +
Sbjct: 301 RGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPL 360
Query: 442 RDGMNLTPYEYIVCRQGVXXXXXXXXXXAPKKSMLVVSEFIGCSPSLSGAIRVNPWNIEA 501
RDGMNL EY+ + +LV+S+F G + L+ A+ VNP++ +
Sbjct: 361 RDGMNLVAKEYVAAQDPA------------NPGVLVLSQFAGAANELTSALIVNPYDRDE 408
Query: 502 TAEAMHEAIQMNEAEKQLRHEKHYRYVSTHDVAYWARSFFQDMER 546
A A+ A+ M+ AE+ RH + + +D+ +W F D+++
Sbjct: 409 VAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQ 453
>pdb|1GZ5|A Chain A, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|B Chain B, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|C Chain C, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|D Chain D, Trehalose-6-Phosphate Synthase. Otsa
Length = 456
Score = 189 bits (479), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 110/405 (27%), Positives = 205/405 (50%), Gaps = 26/405 (6%)
Query: 144 LTKFYHGFCKQHLWPLFHYMLPFSATHGGRFDRSLWEAYVSANKIFSQRVIEVINPEDDY 203
L ++Y+ F LWP FHY L +F R W+ Y+ N + + +++ ++ +DD
Sbjct: 72 LDEYYNQFSNAVLWPAFHYRLDLV-----QFQRPAWDGYLRVNALLADKLLPLLQ-DDDI 125
Query: 204 VWIHDYHLMVLPXXXXXXXXXXXMGFFLHSPFPSSEIYRTLPVREEILKALLNADLIGFH 263
+WIHDYHL+ +GFFLH PFP+ EI+ LP + +L+ L + DL+GF
Sbjct: 126 IWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQ 185
Query: 264 TFDYARHFLSCCSRMLGLEYQSKRGYIGLEYYGRTVGIKIMPVGIHMGQI--ESVLRLAD 321
T + FL C S + + +S + + +G+ ++ P+GI +I ++ L
Sbjct: 186 TENDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAKQAAGPLPP 242
Query: 322 KDWRVQELKQQFEGKTVLLGVDDMDIFKGVDLKLLAMEHLLKQHPKWQGRAVLVQIANPA 381
K + +LK + + + V+ +D KG+ + LA E LL+++P+ G+ QIA +
Sbjct: 243 K---LAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTS 299
Query: 382 RGRGKDLEEIQAEIHATCKRINETFGRPGYEPVVFIDKPVTLSERAAYYTIAECVVVTAV 441
RG + ++I+ ++ RIN +G+ G+ P+ ++++ + ++ +VT +
Sbjct: 300 RGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLXKIFRYSDVGLVTPL 359
Query: 442 RDGMNLTPYEYIVCRQGVXXXXXXXXXXAPKKSMLVVSEFIGCSPSLSGAIRVNPWNIEA 501
RDG NL EY+ + +LV+S+F G + L+ A+ VNP++ +
Sbjct: 360 RDGXNLVAKEYVAAQDPA------------NPGVLVLSQFAGAANELTSALIVNPYDRDE 407
Query: 502 TAEAMHEAIQMNEAEKQLRHEKHYRYVSTHDVAYWARSFFQDMER 546
A A+ A+ + AE+ RH + + +D+ +W F D+++
Sbjct: 408 VAAALDRALTXSLAERISRHAEXLDVIVKNDINHWQECFISDLKQ 452
>pdb|4F96|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F96|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F97|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F97|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F9F|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|C Chain C, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|D Chain D, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|E Chain E, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|F Chain F, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|3VDM|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDM|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDN|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
Length = 497
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/329 (21%), Positives = 140/329 (42%), Gaps = 32/329 (9%)
Query: 176 RSLWEAYVSANKIFSQRVIEVINPEDDYVW-IHDYHLMVLPXXXXXXXXXXXMGFFLHSP 234
R W + + F+ +++ D V+ +HDY L+ +P + F+H P
Sbjct: 125 REGWADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIP 184
Query: 235 FPSSEIYRTLP--VREEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGL 292
+PS++ +R LP +R IL +L A IGF + R+FL + +L + + R + +
Sbjct: 185 WPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESVADLLP-DARIDREAMTV 243
Query: 293 EYYGRTVGIKIMPVGIHMGQIESVLRLADKDWRVQE-LKQQFEGKTVLLGVDDMDIFKGV 351
E+ G ++ MP+G S L L ++ ++ E +++ +G +++ D K
Sbjct: 244 EWRGHRTRLRTMPLGY------SPLTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNA 297
Query: 352 DLKLLAMEHLLKQHPKWQGRAVLVQIANPARGRGKDLEEIQAEIHATCKRINETFGRPGY 411
+ + A L + + +LV++ NP R + + N G
Sbjct: 298 ERAVRAFV-LAARGGGLEKTRMLVRM-NPNRLYVPANADYVHRVETAVAEANAELG---- 351
Query: 412 EPVVFIDKPVTLSERAAYYTIAECVVVTAVRDGMNLTPYEYIVCRQGVXXXXXXXXXXAP 471
V ID ++ A + A+ ++ + DG NL+ +E + +
Sbjct: 352 SDTVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNE-------------- 397
Query: 472 KKSMLVVSEFIGCSPSLSGAIR-VNPWNI 499
+ + +++SE G + L R VNP+++
Sbjct: 398 RDADVILSETCGAAEVLGEYCRSVNPFDL 426
>pdb|3T5T|A Chain A, Vall From Streptomyces Hygroscopicus In Apo Form
pdb|3T5T|B Chain B, Vall From Streptomyces Hygroscopicus In Apo Form
Length = 496
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/329 (21%), Positives = 140/329 (42%), Gaps = 32/329 (9%)
Query: 176 RSLWEAYVSANKIFSQRVIEVINPEDDYVW-IHDYHLMVLPXXXXXXXXXXXMGFFLHSP 234
R W + + F+ +++ D V+ +HDY L+ +P + F+H P
Sbjct: 124 REGWADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIP 183
Query: 235 FPSSEIYRTLP--VREEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGL 292
+PS++ +R LP +R IL +L A IGF + R+FL + +L + + R + +
Sbjct: 184 WPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESVADLLP-DARIDREAMTV 242
Query: 293 EYYGRTVGIKIMPVGIHMGQIESVLRLADKDWRVQE-LKQQFEGKTVLLGVDDMDIFKGV 351
E+ G ++ MP+G S L L ++ ++ E +++ +G +++ D K
Sbjct: 243 EWRGHRTRLRTMPLGY------SPLTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNA 296
Query: 352 DLKLLAMEHLLKQHPKWQGRAVLVQIANPARGRGKDLEEIQAEIHATCKRINETFGRPGY 411
+ + A L + + +LV++ NP R + + N G
Sbjct: 297 ERAVRAFV-LAARGGGLEKTRMLVRM-NPNRLYVPANADYVHRVETAVAEANAELG---- 350
Query: 412 EPVVFIDKPVTLSERAAYYTIAECVVVTAVRDGMNLTPYEYIVCRQGVXXXXXXXXXXAP 471
V ID ++ A + A+ ++ + DG NL+ +E + +
Sbjct: 351 SDTVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNE-------------- 396
Query: 472 KKSMLVVSEFIGCSPSLSGAIR-VNPWNI 499
+ + +++SE G + L R VNP+++
Sbjct: 397 RDADVILSETCGAAEVLGEYCRSVNPFDL 425
>pdb|3T7D|A Chain A, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
pdb|3T7D|B Chain B, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
Length = 497
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 69/329 (20%), Positives = 135/329 (41%), Gaps = 32/329 (9%)
Query: 176 RSLWEAYVSANKIFSQRVIEVINPEDDYVW-IHDYHLMVLPXXXXXXXXXXXMGFFLHSP 234
R W + + F+ +++ D V+ +HDY L+ +P + F+H P
Sbjct: 125 REGWADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIP 184
Query: 235 FPSSEIYRTLP--VREEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGL 292
+PS++ +R LP +R IL L A IGF + R+FL + +L + + R +
Sbjct: 185 WPSADYWRILPKEIRTGILHGXLPATTIGFFADRWCRNFLESVADLLP-DARIDREAXTV 243
Query: 293 EYYGRTVGIKIMPVGIHMGQIESVLRLADKDWRVQE-LKQQFEGKTVLLGVDDMDIFKGV 351
E+ G ++ P+G S L L ++ ++ E +++ +G +++ D K
Sbjct: 244 EWRGHRTRLRTXPLGY------SPLTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNA 297
Query: 352 DLKLLAMEHLLKQHPKWQGRAVLVQIANPARGRGKDLEEIQAEIHATCKRINETFGRPGY 411
+ + A L + + LV+ NP R + + N G
Sbjct: 298 ERAVRAFV-LAARGGGLEKTRXLVR-XNPNRLYVPANADYVHRVETAVAEANAELG---- 351
Query: 412 EPVVFIDKPVTLSERAAYYTIAECVVVTAVRDGMNLTPYEYIVCRQGVXXXXXXXXXXAP 471
V ID ++ A + A+ ++ + DG NL+ +E + +
Sbjct: 352 SDTVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNE-------------- 397
Query: 472 KKSMLVVSEFIGCSPSLSGAIR-VNPWNI 499
+ + +++SE G + L R VNP+++
Sbjct: 398 RDADVILSETCGAAEVLGEYCRSVNPFDL 426
>pdb|1U02|A Chain A, Crystal Structure Of Trehalose-6-Phosphate Phosphatase
Related Protein
Length = 239
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 56/250 (22%), Positives = 99/250 (39%), Gaps = 39/250 (15%)
Query: 594 ILFDYDGTVMPQTSINKAPSQA-----VISIINTLCNDARNTVFVVSGRGRDCLGKWFSP 648
I DYDGT++P I P ++ ++S+I+ L R ++V+GR + + + F P
Sbjct: 4 IFLDYDGTLVP---IIXNPEESYADAGLLSLISDL--KERFDTYIVTGRSPEEISR-FLP 57
Query: 649 CKKLGIAAEHGYFMRWSADEEWQNCGQSVDFGWIQIAEPVMKLYTESTDGSYIEIKESAL 708
+ HG + + + N G G + + G I K A+
Sbjct: 58 LD-INXICYHGACSKINGQIVYNN-GSDRFLGVFDRIYEDTRSWVSDFPGLRIYRKNLAV 115
Query: 709 VWHHRDADPGF-GSSQAKELLDHLESVLANEPAAVKSGQFIVEVKPQGVSKGVVAEKIFT 767
++H G G+ +L +E + G+ I+E++ GV+KG
Sbjct: 116 LYHL-----GLXGADXKPKLRSRIEEIARIFGVETYYGKXIIELRVPGVNKG-------- 162
Query: 768 TMAESGRHADFVLCIGDDRSDEDMFEIIGNATSSGVLSSNASVFACTVGQKPSKAKYYLD 827
+ S R + GDD +DE FE +N VG+ + AK+++
Sbjct: 163 SAIRSVRGERPAIIAGDDATDEAAFE------------ANDDALTIKVGEGETHAKFHVA 210
Query: 828 DAAEVVTMLE 837
D E +L+
Sbjct: 211 DYIEXRKILK 220
>pdb|3TUU|A Chain A, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|B Chain B, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|C Chain C, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|D Chain D, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|E Chain E, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|F Chain F, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|G Chain G, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|H Chain H, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
Length = 346
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 27/144 (18%)
Query: 652 LGIAAEHGYFMRWSADEEWQNCGQSVDF--GWIQIAEPVMKLYTESTDGSYIEIKESALV 709
+G G M W DE G +V+ G I++ + + ST + ++ V
Sbjct: 85 VGGTTGEGQLMSW--DEHIMLIGHTVNCFGGSIKV---IGNTGSNSTREAIHATEQGFAV 139
Query: 710 WHHR--DADPGFGSSQAKELLDHLESVLANEPAAV-----KSGQFIVEVKPQGVSKGVVA 762
H +P +G + + L+ H ESVL P + ++GQ I P GV
Sbjct: 140 GMHAALHINPYYGKTSLEGLVSHFESVLPMGPTVIYNVPSRTGQDI----PPGV------ 189
Query: 763 EKIFTTMAESGRHADFVLCIGDDR 786
T+A+S A C+G+DR
Sbjct: 190 ---IHTVAQSANLAGVXECVGNDR 210
>pdb|2UUD|H Chain H, Crystal Structure Of The Tepc15-Vk45.1 Anti-2-Phenyl-5-
Oxazolone Nq10-1.12 Scfv In Complex With The Hapten
pdb|2UUD|J Chain J, Crystal Structure Of The Tepc15-Vk45.1 Anti-2-Phenyl-5-
Oxazolone Nq10-1.12 Scfv In Complex With The Hapten
Length = 121
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 585 AYLRSKSRAILFDYDGTVMPQTSINKAPSQAVISI-INTLCNDARNTVFVVSGRGRDCLG 643
A++R+K+ DY +V + +I++ SQ+++ + +NTL + T + G D G
Sbjct: 49 AFIRNKANGYTTDYSASVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCARG---DYYG 105
Query: 644 KWFS 647
WF+
Sbjct: 106 AWFA 109
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 597 DYDGTVMPQTSINKAPSQAVI---SIINTLCNDARNTVFVVSGRGRDCLGKWFSPCKKLG 653
+++G V P T N S ++ +I T+ D + +G+ + P ++
Sbjct: 556 NFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGTNAKGQQVFLRDIWPTREEI 615
Query: 654 IAAEHGYFMRWSADEEWQNCGQSVDFGWIQIAEPVMKLYTESTDGSYIE 702
A E Y + E +Q ++V+ W +A P KLY + +YI+
Sbjct: 616 QAVERQYVIPGMFTEVYQKI-ETVNASWNALAAPSDKLYLWNPKSTYIK 663
>pdb|3URF|Z Chain Z, Human RanklOPG COMPLEX
Length = 171
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 641 CLGKWFSPCKKLGIAAEHGYFMRWSADEEWQNCGQSV-DFGWI-QIAEPVMKLYTESTDG 698
C KW + C +H Y W +E C + ++ Q E +G
Sbjct: 33 CTAKWKTVCAP---CPDHYYTDSWHTSDECLYCSPVCKELQYVKQECNRTHNRVCECKEG 89
Query: 699 SYIEIKESALVWHHRDADPGFGSSQA 724
Y+EI+ HR PGFG QA
Sbjct: 90 RYLEIE---FCLKHRSCPPGFGVVQA 112
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 313 IESVLRLADKDWRVQE----LKQQFEGKTVLLGVDDMDIFKGVDLKLLAMEHLLKQHPKW 368
IE +++L + ++ Q Q + + V + + ++ I G L E H KW
Sbjct: 254 IEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKW 313
Query: 369 QGRAVLVQIANPARGRGKDLEEIQAEIHATCKRINETF----GRPG 410
+ V +A A G G D +++ IH + + E + GR G
Sbjct: 314 SANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 359
>pdb|3A5Z|B Chain B, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|D Chain D, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|F Chain F, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|H Chain H, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
Length = 191
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 18/127 (14%)
Query: 731 LESVLANEPAAVKSGQFIVEVKPQGVSK--------GVVAEKIFTTMAESGRHADFV-LC 781
L+ +L EP AV++ +F+ K Q ++ G EK F + +S AD V +
Sbjct: 16 LKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKS-TDSAEGADVVDMN 74
Query: 782 IGDDRSDEDMFEIIGNATSSGVLSSNASVFACTVGQKPSKAKYYLDDAAEVVTMLEALAE 841
+ +D + + + N T LS++A AK+ LD A +VT+
Sbjct: 75 LTYLYNDGEFWHFMNNETFE-QLSADAKAIG-------DNAKWLLDQAECIVTLWNGQPI 126
Query: 842 ASAPPSF 848
+ PP+F
Sbjct: 127 SVTPPNF 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,200,237
Number of Sequences: 62578
Number of extensions: 1056446
Number of successful extensions: 2369
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2339
Number of HSP's gapped (non-prelim): 17
length of query: 856
length of database: 14,973,337
effective HSP length: 107
effective length of query: 749
effective length of database: 8,277,491
effective search space: 6199840759
effective search space used: 6199840759
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)