Query 003028
Match_columns 856
No_of_seqs 766 out of 4037
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 15:36:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.8E-61 6.2E-66 589.2 66.0 571 256-848 381-1022(1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.7E-57 5.9E-62 554.2 53.8 515 284-829 373-916 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1.6E-58 3.4E-63 572.5 37.3 529 283-847 53-650 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 5.8E-58 1.3E-62 567.5 36.5 539 243-835 119-664 (857)
5 PLN03081 pentatricopeptide (PP 100.0 5.8E-53 1.3E-57 511.2 49.2 478 281-795 87-569 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.3E-51 5E-56 497.3 47.0 520 240-793 82-613 (697)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 6.6E-20 1.4E-24 228.3 52.5 389 337-739 444-832 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.2E-19 2.5E-24 226.1 52.1 387 337-737 512-898 (899)
9 PRK11788 tetratricopeptide rep 99.8 2.4E-17 5.2E-22 186.5 37.4 296 338-641 49-354 (389)
10 PRK11788 tetratricopeptide rep 99.8 4.8E-17 1E-21 184.0 36.9 296 367-669 42-347 (389)
11 TIGR00990 3a0801s09 mitochondr 99.7 1.8E-13 3.9E-18 164.2 46.5 388 336-739 139-571 (615)
12 PRK11447 cellulose synthase su 99.7 7.3E-13 1.6E-17 169.4 52.7 397 335-745 280-747 (1157)
13 PRK15174 Vi polysaccharide exp 99.7 1.7E-13 3.7E-18 164.5 43.4 339 320-669 38-381 (656)
14 KOG4626 O-linked N-acetylgluco 99.7 2.4E-13 5.1E-18 149.4 39.1 402 330-750 122-537 (966)
15 PRK15174 Vi polysaccharide exp 99.7 3.2E-13 6.9E-18 162.1 44.2 288 337-634 89-381 (656)
16 KOG4626 O-linked N-acetylgluco 99.7 9E-14 2E-18 152.7 34.1 367 359-740 115-486 (966)
17 PRK11447 cellulose synthase su 99.7 6.2E-12 1.3E-16 160.9 52.2 368 365-740 274-701 (1157)
18 PRK10049 pgaA outer membrane p 99.6 4.1E-12 9E-17 155.6 47.0 400 329-740 20-457 (765)
19 TIGR00990 3a0801s09 mitochondr 99.6 9.1E-12 2E-16 149.5 48.3 348 322-681 155-549 (615)
20 KOG4422 Uncharacterized conser 99.6 1.6E-11 3.6E-16 130.2 38.3 325 393-740 205-552 (625)
21 PRK10049 pgaA outer membrane p 99.5 2.8E-11 6E-16 148.3 40.8 374 359-746 14-427 (765)
22 PRK14574 hmsH outer membrane p 99.5 1.9E-10 4.1E-15 139.2 47.0 392 338-740 48-514 (822)
23 KOG4422 Uncharacterized conser 99.5 2.6E-11 5.6E-16 128.8 33.8 342 327-673 207-594 (625)
24 PRK09782 bacteriophage N4 rece 99.4 2.6E-09 5.6E-14 131.9 47.1 390 337-746 160-711 (987)
25 KOG2002 TPR-containing nuclear 99.4 5.4E-09 1.2E-13 121.7 41.5 469 339-834 251-759 (1018)
26 PRK14574 hmsH outer membrane p 99.4 6.2E-09 1.4E-13 126.1 44.1 369 365-745 39-483 (822)
27 PRK10747 putative protoheme IX 99.4 3.3E-09 7E-14 120.3 37.1 281 373-666 97-387 (398)
28 KOG2076 RNA polymerase III tra 99.4 7.8E-09 1.7E-13 119.8 40.0 328 333-667 148-510 (895)
29 PRK10747 putative protoheme IX 99.4 4.3E-09 9.3E-14 119.4 38.0 288 332-633 91-389 (398)
30 PF13429 TPR_15: Tetratricopep 99.3 9.2E-12 2E-16 134.4 14.1 261 365-633 13-276 (280)
31 TIGR00540 hemY_coli hemY prote 99.3 6.2E-09 1.3E-13 118.6 35.9 286 373-665 97-395 (409)
32 KOG1126 DNA-binding cell divis 99.3 1.9E-08 4.2E-13 113.4 37.5 285 339-639 334-625 (638)
33 TIGR00540 hemY_coli hemY prote 99.3 1.6E-08 3.5E-13 115.1 36.3 285 338-633 98-398 (409)
34 PF13429 TPR_15: Tetratricopep 99.3 2.8E-11 6.1E-16 130.6 13.0 261 400-667 13-275 (280)
35 PRK09782 bacteriophage N4 rece 99.3 8.8E-08 1.9E-12 118.6 43.7 317 339-669 357-706 (987)
36 COG2956 Predicted N-acetylgluc 99.2 1.9E-08 4E-13 104.4 30.3 226 408-639 48-283 (389)
37 KOG2076 RNA polymerase III tra 99.2 5.7E-08 1.2E-12 112.7 37.2 340 371-754 150-523 (895)
38 COG2956 Predicted N-acetylgluc 99.2 4.6E-08 1E-12 101.5 31.8 283 339-632 50-345 (389)
39 KOG2002 TPR-containing nuclear 99.2 1E-07 2.2E-12 111.3 36.3 397 338-740 284-746 (1018)
40 COG3071 HemY Uncharacterized e 99.1 3.7E-07 7.9E-12 97.7 35.9 283 373-665 97-386 (400)
41 COG3071 HemY Uncharacterized e 99.1 2.2E-07 4.8E-12 99.4 33.0 290 338-638 98-394 (400)
42 KOG1915 Cell cycle control pro 99.1 9E-07 1.9E-11 95.9 37.7 389 338-740 87-537 (677)
43 KOG1155 Anaphase-promoting com 99.1 8.4E-07 1.8E-11 96.2 36.9 321 329-668 169-494 (559)
44 KOG0495 HAT repeat protein [RN 99.1 2E-05 4.4E-10 88.7 47.2 395 332-741 414-848 (913)
45 TIGR02521 type_IV_pilW type IV 99.1 9.2E-08 2E-12 98.6 27.6 197 361-561 32-229 (234)
46 KOG4318 Bicoid mRNA stability 99.1 3.5E-08 7.6E-13 113.7 25.8 268 353-655 18-286 (1088)
47 TIGR02521 type_IV_pilW type IV 99.1 1E-07 2.2E-12 98.2 27.5 163 467-632 67-230 (234)
48 PF13041 PPR_2: PPR repeat fam 99.1 4.3E-10 9.4E-15 87.3 6.8 50 603-652 1-50 (50)
49 KOG1155 Anaphase-promoting com 99.0 6.6E-07 1.4E-11 97.0 32.7 289 334-632 237-534 (559)
50 PF13041 PPR_2: PPR repeat fam 99.0 4.9E-10 1.1E-14 87.0 6.6 49 393-441 1-49 (50)
51 KOG1126 DNA-binding cell divis 99.0 7.1E-08 1.5E-12 108.9 25.3 280 375-671 334-622 (638)
52 PRK12370 invasion protein regu 99.0 2.8E-07 6E-12 109.2 31.8 149 446-597 320-468 (553)
53 KOG2003 TPR repeat-containing 99.0 2.1E-07 4.5E-12 99.8 26.6 289 368-665 427-718 (840)
54 KOG0495 HAT repeat protein [RN 99.0 2E-05 4.3E-10 88.8 42.5 363 367-739 413-782 (913)
55 PRK12370 invasion protein regu 99.0 5E-07 1.1E-11 107.0 32.0 266 358-634 254-535 (553)
56 KOG0547 Translocase of outer m 99.0 4E-06 8.7E-11 91.6 35.2 224 510-738 336-565 (606)
57 KOG2003 TPR repeat-containing 99.0 1E-07 2.2E-12 102.0 22.6 187 547-739 502-689 (840)
58 PF12569 NARP1: NMDA receptor- 98.9 1.4E-06 3.1E-11 100.4 32.4 291 331-633 11-333 (517)
59 KOG1129 TPR repeat-containing 98.9 1.4E-06 3E-11 90.5 27.4 229 399-633 227-457 (478)
60 KOG1915 Cell cycle control pro 98.9 0.00013 2.8E-09 79.6 42.0 326 336-672 153-539 (677)
61 KOG4318 Bicoid mRNA stability 98.9 9E-08 2E-12 110.4 18.7 256 382-673 12-269 (1088)
62 KOG1840 Kinesin light chain [C 98.9 1.6E-06 3.6E-11 98.9 28.7 244 465-737 199-477 (508)
63 KOG1129 TPR repeat-containing 98.8 6.3E-07 1.4E-11 93.0 22.3 230 363-598 226-457 (478)
64 PF12569 NARP1: NMDA receptor- 98.8 1.1E-05 2.3E-10 93.2 31.8 93 574-669 198-291 (517)
65 KOG1840 Kinesin light chain [C 98.8 3.8E-06 8.2E-11 95.9 27.4 236 397-632 201-477 (508)
66 KOG2047 mRNA splicing factor [ 98.7 0.00025 5.3E-09 80.2 38.2 402 332-747 110-586 (835)
67 KOG1173 Anaphase-promoting com 98.7 2.4E-05 5.3E-10 87.2 30.1 288 355-652 239-534 (611)
68 KOG0547 Translocase of outer m 98.6 6E-05 1.3E-09 82.6 31.1 353 337-701 128-564 (606)
69 cd05804 StaR_like StaR_like; a 98.6 0.00014 3E-09 81.2 35.1 262 367-633 50-335 (355)
70 KOG1174 Anaphase-promoting com 98.6 0.00015 3.1E-09 78.1 31.2 299 330-640 200-504 (564)
71 PRK11189 lipoprotein NlpI; Pro 98.6 5.8E-05 1.3E-09 82.1 29.6 94 398-493 67-160 (296)
72 cd05804 StaR_like StaR_like; a 98.6 0.00018 4E-09 80.2 34.2 304 360-668 6-335 (355)
73 KOG2047 mRNA splicing factor [ 98.6 0.00092 2E-08 75.7 38.2 376 361-744 249-691 (835)
74 PRK11189 lipoprotein NlpI; Pro 98.6 4.9E-05 1.1E-09 82.7 28.0 218 339-565 41-266 (296)
75 KOG1173 Anaphase-promoting com 98.5 7.1E-05 1.5E-09 83.6 27.7 266 338-614 258-531 (611)
76 KOG1070 rRNA processing protei 98.4 9.3E-05 2E-09 89.8 27.7 230 427-661 1455-1692(1710)
77 PF04733 Coatomer_E: Coatomer 98.4 1E-05 2.2E-10 87.2 18.2 248 406-669 12-265 (290)
78 COG3063 PilF Tfp pilus assembl 98.4 0.00025 5.4E-09 71.3 25.1 195 400-598 40-235 (250)
79 KOG1156 N-terminal acetyltrans 98.4 0.0048 1E-07 70.4 37.8 96 643-741 374-470 (700)
80 KOG1156 N-terminal acetyltrans 98.3 0.0073 1.6E-07 69.0 38.7 392 333-738 50-510 (700)
81 COG3063 PilF Tfp pilus assembl 98.3 0.00031 6.7E-09 70.6 24.9 205 434-644 39-244 (250)
82 KOG1174 Anaphase-promoting com 98.3 0.001 2.2E-08 71.8 29.9 271 391-671 228-502 (564)
83 PRK04841 transcriptional regul 98.3 0.0017 3.6E-08 82.2 37.8 338 372-740 386-761 (903)
84 KOG3785 Uncharacterized conser 98.3 0.0018 3.9E-08 68.6 30.4 345 366-736 63-454 (557)
85 KOG3785 Uncharacterized conser 98.3 0.0015 3.2E-08 69.1 29.3 129 541-673 365-494 (557)
86 PF12854 PPR_1: PPR repeat 98.3 9.4E-07 2E-11 62.2 4.1 32 390-421 2-33 (34)
87 PF12854 PPR_1: PPR repeat 98.3 1E-06 2.3E-11 62.0 4.0 32 600-631 2-33 (34)
88 KOG3616 Selective LIM binding 98.3 0.0002 4.3E-09 81.3 23.6 217 475-734 716-932 (1636)
89 PF04733 Coatomer_E: Coatomer 98.2 2.8E-05 6.1E-10 83.8 16.3 226 397-639 37-268 (290)
90 KOG3617 WD40 and TPR repeat-co 98.2 0.00034 7.4E-09 80.7 24.7 243 370-655 738-1008(1416)
91 KOG4162 Predicted calmodulin-b 98.2 0.0099 2.1E-07 69.2 36.5 378 356-739 319-783 (799)
92 KOG3617 WD40 and TPR repeat-co 98.2 0.001 2.3E-08 76.8 27.9 226 337-597 741-994 (1416)
93 KOG2376 Signal recognition par 98.2 0.0092 2E-07 67.5 34.2 110 338-460 26-140 (652)
94 PRK04841 transcriptional regul 98.1 0.0037 8.1E-08 79.0 34.6 299 372-670 421-761 (903)
95 KOG2376 Signal recognition par 98.1 0.0099 2.1E-07 67.3 32.8 146 585-734 356-515 (652)
96 KOG4340 Uncharacterized conser 98.0 0.00086 1.9E-08 69.4 20.9 183 338-531 24-209 (459)
97 KOG1070 rRNA processing protei 98.0 0.0028 6.1E-08 77.5 27.9 214 337-555 1471-1691(1710)
98 PLN02789 farnesyltranstransfer 98.0 0.0044 9.5E-08 67.8 27.6 205 372-582 49-267 (320)
99 KOG1128 Uncharacterized conser 98.0 0.0016 3.4E-08 75.2 23.8 214 399-633 402-615 (777)
100 KOG0985 Vesicle coat protein c 98.0 0.007 1.5E-07 71.8 29.0 201 396-631 1105-1305(1666)
101 KOG1128 Uncharacterized conser 97.9 0.00056 1.2E-08 78.8 19.6 238 357-616 395-634 (777)
102 PRK14720 transcript cleavage f 97.9 0.0027 5.9E-08 77.2 26.2 223 355-616 25-268 (906)
103 PLN02789 farnesyltranstransfer 97.9 0.008 1.7E-07 65.8 27.8 209 403-617 45-267 (320)
104 TIGR03302 OM_YfiO outer membra 97.9 0.0013 2.9E-08 68.7 20.8 184 359-564 32-232 (235)
105 KOG0624 dsRNA-activated protei 97.9 0.018 3.9E-07 61.1 28.1 191 437-633 162-369 (504)
106 TIGR03302 OM_YfiO outer membra 97.9 0.0015 3.3E-08 68.3 21.1 186 393-599 31-232 (235)
107 KOG0985 Vesicle coat protein c 97.9 0.038 8.3E-07 65.9 33.0 293 324-666 1075-1367(1666)
108 KOG3616 Selective LIM binding 97.9 0.01 2.2E-07 68.0 27.5 167 437-628 739-905 (1636)
109 KOG3081 Vesicle coat complex C 97.9 0.0069 1.5E-07 62.3 23.8 234 408-658 21-259 (299)
110 KOG1914 mRNA cleavage and poly 97.8 0.043 9.3E-07 61.7 30.7 410 324-739 17-501 (656)
111 KOG4340 Uncharacterized conser 97.8 0.0061 1.3E-07 63.3 22.4 290 361-663 11-333 (459)
112 PRK14720 transcript cleavage f 97.8 0.0056 1.2E-07 74.5 25.8 240 298-581 6-268 (906)
113 KOG1914 mRNA cleavage and poly 97.8 0.13 2.7E-06 58.1 39.6 441 291-739 13-539 (656)
114 COG5010 TadD Flp pilus assembl 97.7 0.004 8.6E-08 64.1 20.2 159 364-526 70-228 (257)
115 KOG3081 Vesicle coat complex C 97.7 0.013 2.8E-07 60.5 23.5 173 450-633 93-270 (299)
116 PRK15179 Vi polysaccharide bio 97.7 0.0059 1.3E-07 73.5 23.7 148 355-507 81-229 (694)
117 KOG2053 Mitochondrial inherita 97.7 0.26 5.7E-06 58.7 40.2 221 339-565 24-256 (932)
118 KOG1125 TPR repeat-containing 97.6 0.01 2.2E-07 67.2 23.2 221 369-597 294-525 (579)
119 PRK10370 formate-dependent nit 97.6 0.0058 1.3E-07 62.2 20.0 120 408-530 52-174 (198)
120 KOG0548 Molecular co-chaperone 97.6 0.04 8.7E-07 62.0 27.6 330 338-676 16-428 (539)
121 TIGR00756 PPR pentatricopeptid 97.6 8.7E-05 1.9E-09 52.1 4.6 33 607-639 2-34 (35)
122 KOG1125 TPR repeat-containing 97.6 0.0058 1.3E-07 69.0 21.0 215 439-663 294-521 (579)
123 PRK10370 formate-dependent nit 97.6 0.0076 1.6E-07 61.4 20.5 118 513-633 52-172 (198)
124 PRK15179 Vi polysaccharide bio 97.6 0.018 3.9E-07 69.4 26.5 148 391-542 82-229 (694)
125 KOG4162 Predicted calmodulin-b 97.6 0.31 6.7E-06 57.3 35.6 375 325-706 321-786 (799)
126 TIGR00756 PPR pentatricopeptid 97.6 0.00011 2.4E-09 51.6 4.3 33 397-429 2-34 (35)
127 COG5010 TadD Flp pilus assembl 97.6 0.011 2.5E-07 60.8 20.3 153 472-628 73-225 (257)
128 KOG0624 dsRNA-activated protei 97.5 0.18 3.9E-06 53.8 34.9 349 363-745 41-426 (504)
129 PRK15359 type III secretion sy 97.5 0.0063 1.4E-07 58.6 17.4 91 401-493 30-120 (144)
130 COG4783 Putative Zn-dependent 97.5 0.056 1.2E-06 60.3 26.1 141 472-634 313-454 (484)
131 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0048 1E-07 69.0 17.6 125 396-527 170-295 (395)
132 KOG2053 Mitochondrial inherita 97.5 0.43 9.4E-06 57.0 33.8 106 372-483 21-128 (932)
133 PF13812 PPR_3: Pentatricopept 97.4 0.00018 3.9E-09 50.3 4.1 33 606-638 2-34 (34)
134 PF10037 MRP-S27: Mitochondria 97.4 0.0018 3.9E-08 72.7 13.9 124 530-653 61-186 (429)
135 PRK15359 type III secretion sy 97.4 0.0036 7.7E-08 60.3 14.3 103 538-644 27-129 (144)
136 PF13812 PPR_3: Pentatricopept 97.4 0.00022 4.7E-09 49.9 4.2 33 711-743 2-34 (34)
137 TIGR02552 LcrH_SycD type III s 97.4 0.0061 1.3E-07 57.5 15.2 106 537-646 19-124 (135)
138 COG4783 Putative Zn-dependent 97.4 0.058 1.2E-06 60.2 24.2 218 404-633 211-436 (484)
139 KOG1127 TPR repeat-containing 97.4 0.3 6.6E-06 58.8 31.1 383 339-735 473-909 (1238)
140 PF10037 MRP-S27: Mitochondria 97.3 0.0031 6.7E-08 70.9 14.3 121 393-513 64-186 (429)
141 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.0057 1.2E-07 68.5 16.2 127 361-493 170-296 (395)
142 TIGR02552 LcrH_SycD type III s 97.3 0.01 2.2E-07 56.0 15.6 88 403-492 25-112 (135)
143 KOG0548 Molecular co-chaperone 97.3 0.18 3.9E-06 56.9 27.0 322 337-671 49-457 (539)
144 KOG3060 Uncharacterized conser 97.2 0.23 5E-06 51.1 23.9 186 339-528 27-219 (289)
145 PF08579 RPM2: Mitochondrial r 97.1 0.0052 1.1E-07 55.1 10.6 80 363-442 28-116 (120)
146 PF01535 PPR: PPR repeat; Int 97.1 0.00048 1E-08 47.0 3.3 30 712-741 2-31 (31)
147 PF06239 ECSIT: Evolutionarily 97.1 0.0074 1.6E-07 60.7 12.6 106 356-480 43-153 (228)
148 PF01535 PPR: PPR repeat; Int 97.1 0.00048 1E-08 46.9 3.1 29 607-635 2-30 (31)
149 PF08579 RPM2: Mitochondrial r 97.1 0.0071 1.5E-07 54.3 10.8 42 436-477 31-73 (120)
150 PF09976 TPR_21: Tetratricopep 97.1 0.028 6.1E-07 54.0 16.1 22 438-459 56-77 (145)
151 KOG3060 Uncharacterized conser 97.0 0.087 1.9E-06 54.1 19.7 160 478-643 25-190 (289)
152 PF09976 TPR_21: Tetratricopep 97.0 0.022 4.9E-07 54.7 15.1 116 513-630 24-143 (145)
153 cd00189 TPR Tetratricopeptide 96.9 0.014 3E-07 49.5 11.8 17 370-386 10-26 (100)
154 PF06239 ECSIT: Evolutionarily 96.9 0.013 2.8E-07 59.0 12.2 104 322-445 42-153 (228)
155 cd00189 TPR Tetratricopeptide 96.9 0.018 3.9E-07 48.8 11.9 95 398-494 3-97 (100)
156 PF05843 Suf: Suppressor of fo 96.7 0.026 5.7E-07 60.8 14.2 130 397-529 3-136 (280)
157 TIGR02795 tol_pal_ybgF tol-pal 96.6 0.062 1.4E-06 48.9 14.3 96 362-459 4-105 (119)
158 PF04840 Vps16_C: Vps16, C-ter 96.6 0.79 1.7E-05 50.2 24.9 278 362-732 2-284 (319)
159 PF14938 SNAP: Soluble NSF att 96.6 0.19 4.2E-06 54.1 19.8 144 472-631 101-263 (282)
160 PF05843 Suf: Suppressor of fo 96.5 0.04 8.8E-07 59.3 14.1 131 361-494 2-136 (280)
161 TIGR02795 tol_pal_ybgF tol-pal 96.5 0.082 1.8E-06 48.1 14.3 95 399-493 6-104 (119)
162 PLN03088 SGT1, suppressor of 96.4 0.053 1.2E-06 60.6 14.6 102 544-649 11-112 (356)
163 PRK02603 photosystem I assembl 96.4 0.14 3E-06 50.7 16.0 91 360-451 35-127 (172)
164 KOG1538 Uncharacterized conser 96.3 0.16 3.5E-06 58.1 17.2 119 604-757 746-864 (1081)
165 PRK10866 outer membrane biogen 96.3 0.8 1.7E-05 48.2 21.6 57 366-424 38-98 (243)
166 KOG1127 TPR repeat-containing 96.3 1.9 4.1E-05 52.4 26.1 181 481-668 474-658 (1238)
167 PRK02603 photosystem I assembl 96.2 0.21 4.6E-06 49.5 16.1 131 394-550 34-166 (172)
168 CHL00033 ycf3 photosystem I as 96.2 0.081 1.7E-06 52.2 12.7 81 360-441 35-117 (168)
169 PF12895 Apc3: Anaphase-promot 96.1 0.013 2.9E-07 50.4 6.2 80 374-455 3-83 (84)
170 PRK10153 DNA-binding transcrip 96.1 0.27 5.9E-06 57.5 18.8 75 568-646 418-492 (517)
171 CHL00033 ycf3 photosystem I as 96.0 0.12 2.6E-06 51.0 13.1 60 434-493 39-100 (168)
172 PRK10866 outer membrane biogen 95.9 1.3 2.9E-05 46.5 21.3 55 576-630 181-237 (243)
173 PF12895 Apc3: Anaphase-promot 95.9 0.019 4E-07 49.5 6.0 47 409-455 3-50 (84)
174 PLN03088 SGT1, suppressor of 95.9 0.17 3.8E-06 56.5 15.3 85 407-493 14-98 (356)
175 PF14938 SNAP: Soluble NSF att 95.8 0.75 1.6E-05 49.6 19.4 145 438-597 102-264 (282)
176 KOG2041 WD40 repeat protein [G 95.8 3.8 8.2E-05 47.8 24.8 105 432-559 798-902 (1189)
177 PRK15363 pathogenicity island 95.7 0.31 6.8E-06 47.0 13.8 95 467-563 37-131 (157)
178 PRK10153 DNA-binding transcrip 95.7 0.59 1.3E-05 54.7 19.0 64 464-529 419-482 (517)
179 PF14559 TPR_19: Tetratricopep 95.6 0.045 9.8E-07 44.7 6.9 64 581-647 2-65 (68)
180 PRK15363 pathogenicity island 95.5 0.59 1.3E-05 45.1 15.2 86 369-457 44-130 (157)
181 KOG1920 IkappaB kinase complex 95.4 9.6 0.00021 47.5 27.8 85 573-669 942-1028(1265)
182 KOG2796 Uncharacterized conser 95.4 4.2 9E-05 42.3 23.5 144 502-648 179-327 (366)
183 PF12688 TPR_5: Tetratrico pep 95.4 0.68 1.5E-05 42.9 14.5 53 406-458 12-66 (120)
184 PF13432 TPR_16: Tetratricopep 95.2 0.069 1.5E-06 43.3 6.8 57 576-633 3-59 (65)
185 KOG2280 Vacuolar assembly/sort 95.2 9.4 0.0002 45.3 26.4 310 320-662 425-766 (829)
186 PF12688 TPR_5: Tetratrico pep 95.2 0.77 1.7E-05 42.5 14.3 91 507-597 8-102 (120)
187 KOG0553 TPR repeat-containing 95.1 0.21 4.5E-06 52.8 11.4 100 546-650 92-192 (304)
188 PF14559 TPR_19: Tetratricopep 95.1 0.077 1.7E-06 43.3 6.8 50 373-423 4-53 (68)
189 PF13525 YfiO: Outer membrane 95.0 3.2 7E-05 42.3 19.9 56 439-494 14-71 (203)
190 PF13525 YfiO: Outer membrane 94.8 3.1 6.8E-05 42.4 19.2 172 367-553 12-196 (203)
191 KOG2796 Uncharacterized conser 94.8 4.8 0.0001 41.9 19.6 129 399-528 181-314 (366)
192 PF04840 Vps16_C: Vps16, C-ter 94.8 7.9 0.00017 42.4 26.4 109 503-631 180-288 (319)
193 PF13414 TPR_11: TPR repeat; P 94.7 0.13 2.8E-06 42.2 7.1 64 569-633 2-66 (69)
194 PF13414 TPR_11: TPR repeat; P 94.5 0.2 4.3E-06 41.0 7.7 59 397-456 5-64 (69)
195 KOG0550 Molecular chaperone (D 94.3 10 0.00023 42.0 23.8 164 463-635 166-351 (486)
196 COG5107 RNA14 Pre-mRNA 3'-end 94.3 1.1 2.4E-05 49.6 14.8 146 395-546 397-546 (660)
197 PF12921 ATP13: Mitochondrial 94.3 0.52 1.1E-05 44.1 10.9 102 534-655 1-103 (126)
198 PRK10803 tol-pal system protei 94.3 0.68 1.5E-05 49.3 13.2 58 363-422 146-207 (263)
199 COG4700 Uncharacterized protei 94.2 6.3 0.00014 39.0 19.0 102 427-528 86-188 (251)
200 PF13371 TPR_9: Tetratricopept 94.2 0.26 5.7E-06 40.8 8.0 63 578-643 3-65 (73)
201 KOG0553 TPR repeat-containing 94.2 0.75 1.6E-05 48.7 12.8 98 439-540 90-187 (304)
202 KOG1538 Uncharacterized conser 94.0 6.4 0.00014 45.7 20.4 87 536-633 748-845 (1081)
203 PF03704 BTAD: Bacterial trans 94.0 0.34 7.4E-06 46.4 9.5 22 397-418 98-119 (146)
204 PF04053 Coatomer_WDAD: Coatom 93.9 1.2 2.6E-05 51.1 15.0 129 397-558 297-425 (443)
205 COG4700 Uncharacterized protei 93.9 7.4 0.00016 38.6 19.2 61 503-563 92-152 (251)
206 PF13432 TPR_16: Tetratricopep 93.8 0.26 5.6E-06 39.8 7.1 53 369-422 6-58 (65)
207 PF03704 BTAD: Bacterial trans 93.8 0.34 7.4E-06 46.4 9.1 72 572-644 64-140 (146)
208 PRK10803 tol-pal system protei 93.7 1.1 2.5E-05 47.6 13.5 61 573-633 183-245 (263)
209 PF12921 ATP13: Mitochondrial 93.6 0.74 1.6E-05 43.1 10.4 47 462-508 49-96 (126)
210 smart00299 CLH Clathrin heavy 93.6 2.7 5.8E-05 39.9 14.7 124 470-616 12-136 (140)
211 KOG1130 Predicted G-alpha GTPa 93.5 0.61 1.3E-05 51.0 10.9 129 538-666 198-341 (639)
212 KOG3941 Intermediate in Toll s 93.3 0.96 2.1E-05 47.3 11.4 107 355-480 62-173 (406)
213 KOG3941 Intermediate in Toll s 93.1 0.57 1.2E-05 48.9 9.5 116 322-457 62-186 (406)
214 smart00299 CLH Clathrin heavy 93.1 3.5 7.7E-05 39.0 14.8 84 365-456 12-95 (140)
215 smart00463 SMR Small MutS-rela 93.0 0.42 9.2E-06 40.7 7.4 77 754-837 2-78 (80)
216 PF13281 DUF4071: Domain of un 92.8 14 0.0003 41.2 20.5 32 603-634 303-334 (374)
217 PF13371 TPR_9: Tetratricopept 92.7 0.69 1.5E-05 38.2 8.2 51 406-457 6-56 (73)
218 PF04053 Coatomer_WDAD: Coatom 92.6 2.1 4.6E-05 49.0 14.4 157 404-595 270-427 (443)
219 KOG1130 Predicted G-alpha GTPa 92.5 2 4.3E-05 47.2 12.9 132 502-633 197-343 (639)
220 COG5107 RNA14 Pre-mRNA 3'-end 92.4 22 0.00048 39.9 23.9 148 500-653 397-548 (660)
221 COG4235 Cytochrome c biogenesi 92.4 5 0.00011 42.7 15.7 99 499-599 155-256 (287)
222 PF13424 TPR_12: Tetratricopep 92.3 0.28 6E-06 41.3 5.3 63 571-633 6-74 (78)
223 KOG2280 Vacuolar assembly/sort 92.2 19 0.0004 43.0 21.0 63 360-422 507-573 (829)
224 PF13170 DUF4003: Protein of u 92.1 4.5 9.7E-05 43.8 15.5 127 411-539 78-221 (297)
225 COG0457 NrfG FOG: TPR repeat [ 92.1 13 0.00028 36.4 30.8 200 431-633 60-264 (291)
226 PF13281 DUF4071: Domain of un 92.0 24 0.00052 39.4 21.6 173 399-599 145-334 (374)
227 PLN03098 LPA1 LOW PSII ACCUMUL 91.8 1.5 3.2E-05 49.5 11.6 62 570-633 75-140 (453)
228 PF09205 DUF1955: Domain of un 91.8 7.3 0.00016 36.4 13.9 59 541-600 92-150 (161)
229 PF13424 TPR_12: Tetratricopep 91.8 0.43 9.3E-06 40.1 5.9 60 397-456 7-72 (78)
230 PLN03098 LPA1 LOW PSII ACCUMUL 91.4 4.4 9.5E-05 45.8 14.6 65 358-424 73-141 (453)
231 KOG0550 Molecular chaperone (D 91.3 13 0.00027 41.4 17.4 274 365-669 54-350 (486)
232 PF13170 DUF4003: Protein of u 91.2 6.6 0.00014 42.6 15.6 129 446-576 78-223 (297)
233 PF08631 SPO22: Meiosis protei 91.2 24 0.00053 37.8 27.4 102 466-570 85-192 (278)
234 KOG1920 IkappaB kinase complex 91.1 26 0.00055 44.0 21.4 36 784-819 1181-1216(1265)
235 COG4235 Cytochrome c biogenesi 91.0 8.4 0.00018 41.1 15.5 101 427-529 153-256 (287)
236 PF10300 DUF3808: Protein of u 90.3 9.2 0.0002 44.4 16.8 164 362-528 190-375 (468)
237 COG0457 NrfG FOG: TPR repeat [ 89.7 21 0.00046 34.8 30.6 223 443-669 36-265 (291)
238 PRK15331 chaperone protein Sic 89.6 17 0.00036 35.5 15.1 88 404-493 46-133 (165)
239 PF07035 Mic1: Colon cancer-as 89.6 18 0.00039 35.6 15.5 134 416-563 15-148 (167)
240 PRK15331 chaperone protein Sic 89.4 8.9 0.00019 37.4 13.0 87 475-563 47-133 (165)
241 PF08631 SPO22: Meiosis protei 89.4 34 0.00073 36.7 26.7 121 338-459 7-150 (278)
242 KOG2114 Vacuolar assembly/sort 89.2 7 0.00015 46.9 14.3 245 362-633 336-589 (933)
243 KOG1585 Protein required for f 88.8 29 0.00064 36.0 16.6 44 376-421 74-117 (308)
244 KOG2297 Predicted translation 88.2 40 0.00087 36.1 17.7 71 549-625 269-341 (412)
245 KOG1550 Extracellular protein 88.1 65 0.0014 38.3 23.6 185 340-531 228-428 (552)
246 COG4105 ComL DNA uptake lipopr 88.1 37 0.00081 35.6 22.4 65 325-389 33-100 (254)
247 PF04097 Nic96: Nup93/Nic96; 87.9 29 0.00063 41.8 19.2 43 365-408 116-158 (613)
248 COG3898 Uncharacterized membra 87.4 52 0.0011 36.5 34.6 310 338-671 67-394 (531)
249 PF09205 DUF1955: Domain of un 87.4 22 0.00049 33.3 13.4 65 466-531 87-151 (161)
250 KOG0543 FKBP-type peptidyl-pro 87.3 8.7 0.00019 42.6 12.8 90 368-458 216-319 (397)
251 COG3629 DnrI DNA-binding trans 87.0 5.5 0.00012 42.5 10.9 78 466-544 154-236 (280)
252 COG3118 Thioredoxin domain-con 87.0 24 0.00052 37.7 15.3 142 369-514 143-286 (304)
253 COG3118 Thioredoxin domain-con 86.8 48 0.001 35.5 17.7 143 404-551 143-288 (304)
254 KOG0543 FKBP-type peptidyl-pro 86.7 11 0.00023 41.9 13.1 123 402-527 215-353 (397)
255 PF10300 DUF3808: Protein of u 86.3 73 0.0016 37.0 24.5 162 398-562 191-374 (468)
256 KOG1585 Protein required for f 86.3 45 0.00099 34.7 17.7 84 398-491 34-117 (308)
257 KOG2610 Uncharacterized conser 86.1 12 0.00026 40.4 12.5 116 442-560 115-234 (491)
258 COG1729 Uncharacterized protei 85.6 13 0.00028 39.2 12.6 96 502-598 144-243 (262)
259 PF07079 DUF1347: Protein of u 84.7 77 0.0017 36.0 33.5 100 531-632 219-325 (549)
260 COG3629 DnrI DNA-binding trans 84.6 8.5 0.00019 41.1 10.9 78 571-649 154-236 (280)
261 KOG1464 COP9 signalosome, subu 83.7 62 0.0013 34.1 19.2 170 480-650 42-236 (440)
262 COG4105 ComL DNA uptake lipopr 83.5 63 0.0014 33.9 21.5 172 476-667 45-231 (254)
263 KOG2041 WD40 repeat protein [G 83.1 1.1E+02 0.0024 36.5 27.8 110 365-489 765-876 (1189)
264 COG4649 Uncharacterized protei 83.1 46 0.001 32.8 13.9 132 362-494 61-196 (221)
265 PF07079 DUF1347: Protein of u 82.8 92 0.002 35.4 29.2 141 333-477 15-179 (549)
266 COG3947 Response regulator con 82.6 67 0.0014 34.4 16.0 70 468-538 282-356 (361)
267 PF04184 ST7: ST7 protein; In 81.9 1E+02 0.0023 35.4 21.2 60 469-528 263-323 (539)
268 PF13512 TPR_18: Tetratricopep 81.5 36 0.00078 32.5 12.6 73 370-443 20-95 (142)
269 PF07035 Mic1: Colon cancer-as 81.5 57 0.0012 32.1 15.2 23 468-490 92-114 (167)
270 KOG4555 TPR repeat-containing 81.0 38 0.00082 31.8 12.0 91 369-460 52-145 (175)
271 KOG2610 Uncharacterized conser 80.9 89 0.0019 34.1 16.4 114 373-489 116-233 (491)
272 KOG4555 TPR repeat-containing 80.8 40 0.00086 31.6 12.0 90 334-425 53-145 (175)
273 PF13176 TPR_7: Tetratricopept 80.7 3.2 7E-05 29.2 4.2 26 713-738 2-27 (36)
274 PF04184 ST7: ST7 protein; In 80.2 1E+02 0.0022 35.5 17.5 58 541-598 265-323 (539)
275 PF13512 TPR_18: Tetratricopep 78.8 42 0.0009 32.1 12.1 52 547-598 22-75 (142)
276 PF10602 RPN7: 26S proteasome 78.8 20 0.00044 35.6 10.7 63 466-528 37-101 (177)
277 COG1729 Uncharacterized protei 78.5 38 0.00082 35.8 12.9 97 397-494 144-244 (262)
278 PF13176 TPR_7: Tetratricopept 78.2 4.5 9.7E-05 28.5 4.3 26 607-632 1-26 (36)
279 PF10602 RPN7: 26S proteasome 78.1 22 0.00049 35.3 10.8 62 502-563 38-101 (177)
280 PF13428 TPR_14: Tetratricopep 77.8 5.3 0.00011 29.5 4.7 27 607-633 3-29 (44)
281 KOG2063 Vacuolar assembly/sort 77.6 1.4E+02 0.0031 37.1 19.1 116 502-617 506-638 (877)
282 KOG4570 Uncharacterized conser 77.5 18 0.00038 38.8 10.0 104 389-494 58-164 (418)
283 PF13929 mRNA_stabil: mRNA sta 76.5 63 0.0014 34.6 13.9 137 373-509 141-287 (292)
284 KOG1941 Acetylcholine receptor 76.3 66 0.0014 35.4 13.9 23 572-594 164-186 (518)
285 KOG0276 Vesicle coat complex C 75.5 18 0.0004 41.9 10.2 44 442-491 649-692 (794)
286 KOG1586 Protein required for f 75.5 92 0.002 32.3 14.0 20 546-565 165-184 (288)
287 PRK11906 transcriptional regul 75.4 1.2E+02 0.0027 34.6 16.6 145 340-489 274-431 (458)
288 PF13428 TPR_14: Tetratricopep 75.2 7.5 0.00016 28.6 5.0 22 366-387 7-28 (44)
289 PF02259 FAT: FAT domain; Int 74.8 1.4E+02 0.0029 32.8 25.2 65 499-563 145-212 (352)
290 PF00515 TPR_1: Tetratricopept 74.7 6.9 0.00015 26.7 4.4 28 606-633 2-29 (34)
291 PF09613 HrpB1_HrpK: Bacterial 73.7 93 0.002 30.4 13.8 18 476-493 55-72 (160)
292 PRK11906 transcriptional regul 73.1 1.4E+02 0.003 34.2 16.2 115 375-492 273-399 (458)
293 COG1747 Uncharacterized N-term 73.0 1.9E+02 0.004 33.5 21.6 95 359-458 65-159 (711)
294 COG3898 Uncharacterized membra 72.5 1.7E+02 0.0036 32.8 32.7 284 338-639 98-397 (531)
295 KOG2114 Vacuolar assembly/sort 72.2 2.4E+02 0.0053 34.5 23.7 143 366-526 374-516 (933)
296 PF13374 TPR_10: Tetratricopep 72.2 7.9 0.00017 27.5 4.5 28 711-738 3-30 (42)
297 KOG0276 Vesicle coat complex C 71.5 54 0.0012 38.3 12.6 105 366-491 643-747 (794)
298 KOG2066 Vacuolar assembly/sort 70.5 2.6E+02 0.0056 34.1 23.5 55 366-422 362-419 (846)
299 KOG1550 Extracellular protein 70.0 2.4E+02 0.0052 33.6 25.2 147 376-530 228-394 (552)
300 PRK09687 putative lyase; Provi 69.5 1.7E+02 0.0036 31.5 28.2 38 610-650 240-277 (280)
301 PF04097 Nic96: Nup93/Nic96; 69.4 90 0.0019 37.7 14.9 314 399-739 115-456 (613)
302 PF07719 TPR_2: Tetratricopept 69.0 11 0.00024 25.4 4.4 27 607-633 3-29 (34)
303 KOG4570 Uncharacterized conser 68.3 54 0.0012 35.3 10.9 46 551-596 116-161 (418)
304 PF02259 FAT: FAT domain; Int 68.1 1.9E+02 0.0041 31.6 24.7 64 570-633 146-212 (352)
305 KOG1941 Acetylcholine receptor 68.1 2E+02 0.0043 31.8 17.2 129 537-665 85-231 (518)
306 COG2909 MalT ATP-dependent tra 68.0 3.1E+02 0.0066 34.0 26.3 224 440-663 425-682 (894)
307 PF13929 mRNA_stabil: mRNA sta 67.0 1.9E+02 0.004 31.1 16.6 124 398-524 134-262 (292)
308 PF01713 Smr: Smr domain; Int 66.9 17 0.00038 30.9 6.1 71 756-835 1-79 (83)
309 PF13374 TPR_10: Tetratricopep 66.4 13 0.00029 26.3 4.6 29 605-633 2-30 (42)
310 COG1747 Uncharacterized N-term 66.3 2.6E+02 0.0055 32.5 26.1 166 393-565 64-235 (711)
311 PF02284 COX5A: Cytochrome c o 65.8 50 0.0011 29.5 8.5 44 554-597 29-72 (108)
312 PRK09687 putative lyase; Provi 64.8 2E+02 0.0044 30.8 30.0 233 358-615 35-277 (280)
313 PHA02875 ankyrin repeat protei 64.8 1.1E+02 0.0024 34.7 14.0 75 370-452 9-87 (413)
314 COG4649 Uncharacterized protei 64.6 1.5E+02 0.0033 29.3 14.4 123 511-633 69-195 (221)
315 PF09613 HrpB1_HrpK: Bacterial 64.0 1.5E+02 0.0032 29.0 13.9 52 546-599 21-73 (160)
316 cd00923 Cyt_c_Oxidase_Va Cytoc 63.8 73 0.0016 28.3 9.1 45 553-597 25-69 (103)
317 PF00515 TPR_1: Tetratricopept 62.2 18 0.0004 24.5 4.4 30 711-740 2-31 (34)
318 PF00637 Clathrin: Region in C 61.2 2.4 5.2E-05 40.3 -0.4 83 366-455 13-95 (143)
319 PF07719 TPR_2: Tetratricopept 61.0 20 0.00043 24.1 4.4 29 712-740 3-31 (34)
320 PF07163 Pex26: Pex26 protein; 60.8 81 0.0017 33.6 10.5 57 467-523 120-181 (309)
321 PF11207 DUF2989: Protein of u 59.9 63 0.0014 32.7 9.3 22 603-624 176-197 (203)
322 KOG2066 Vacuolar assembly/sort 58.4 4.2E+02 0.0092 32.4 24.9 162 337-528 369-533 (846)
323 PF00637 Clathrin: Region in C 58.4 2.8 6.1E-05 39.8 -0.4 83 541-630 13-95 (143)
324 PF07721 TPR_4: Tetratricopept 58.3 13 0.00028 24.0 2.9 23 713-735 4-26 (26)
325 TIGR02508 type_III_yscG type I 57.3 94 0.002 27.8 8.6 88 338-434 19-106 (115)
326 COG3947 Response regulator con 57.2 1.4E+02 0.0029 32.1 11.4 58 399-457 283-340 (361)
327 cd00923 Cyt_c_Oxidase_Va Cytoc 56.1 70 0.0015 28.3 7.7 44 414-457 26-69 (103)
328 PF11207 DUF2989: Protein of u 55.4 1.1E+02 0.0023 31.1 10.0 72 412-484 123-197 (203)
329 PRK15180 Vi polysaccharide bio 54.0 2.9E+02 0.0063 31.6 13.9 121 406-530 300-421 (831)
330 TIGR02508 type_III_yscG type I 53.6 1.1E+02 0.0025 27.3 8.6 78 446-530 21-98 (115)
331 PHA02875 ankyrin repeat protei 53.6 3.4E+02 0.0073 30.6 15.6 122 354-487 24-154 (413)
332 PF13762 MNE1: Mitochondrial s 53.1 2.1E+02 0.0047 27.4 11.2 82 362-443 41-128 (145)
333 PF13431 TPR_17: Tetratricopep 52.9 18 0.0004 25.1 3.1 24 602-625 10-33 (34)
334 PF13181 TPR_8: Tetratricopept 51.5 32 0.0007 23.1 4.3 28 712-739 3-30 (34)
335 KOG2297 Predicted translation 51.0 3.5E+02 0.0077 29.3 18.0 19 537-555 323-341 (412)
336 TIGR02561 HrpB1_HrpK type III 50.7 2E+02 0.0042 27.8 10.4 17 372-388 56-72 (153)
337 PF02284 COX5A: Cytochrome c o 50.1 61 0.0013 29.0 6.4 37 421-457 36-72 (108)
338 PF13174 TPR_6: Tetratricopept 49.7 17 0.00038 24.2 2.6 25 715-739 5-29 (33)
339 PF10345 Cohesin_load: Cohesin 49.0 5.5E+02 0.012 30.9 29.9 49 616-664 372-428 (608)
340 KOG2063 Vacuolar assembly/sort 48.9 6.1E+02 0.013 31.9 16.9 26 398-423 507-532 (877)
341 PF13431 TPR_17: Tetratricopep 48.9 22 0.00047 24.7 2.9 12 399-410 17-28 (34)
342 KOG2034 Vacuolar sorting prote 48.9 6.2E+02 0.013 31.5 20.1 255 345-630 489-746 (911)
343 PF13181 TPR_8: Tetratricopept 48.6 43 0.00094 22.5 4.5 28 606-633 2-29 (34)
344 KOG2396 HAT (Half-A-TPR) repea 48.5 4.9E+02 0.011 30.2 24.2 277 341-633 268-558 (568)
345 PF10366 Vps39_1: Vacuolar sor 48.1 1E+02 0.0022 27.9 8.0 27 502-528 41-67 (108)
346 COG4785 NlpI Lipoprotein NlpI, 47.8 3.4E+02 0.0073 28.1 16.4 28 537-564 239-266 (297)
347 PF07163 Pex26: Pex26 protein; 47.3 1.6E+02 0.0036 31.3 10.2 20 544-563 127-146 (309)
348 COG4455 ImpE Protein of avirul 47.2 1.1E+02 0.0023 31.5 8.5 52 437-489 8-59 (273)
349 TIGR02561 HrpB1_HrpK type III 46.3 2.8E+02 0.0061 26.8 12.7 50 548-599 23-73 (153)
350 PF09477 Type_III_YscG: Bacter 46.3 1.9E+02 0.0041 26.2 8.9 88 337-433 19-106 (116)
351 COG2976 Uncharacterized protei 44.2 3.6E+02 0.0078 27.4 12.9 89 542-635 96-189 (207)
352 PF10366 Vps39_1: Vacuolar sor 44.2 1E+02 0.0022 27.9 7.3 28 712-739 41-68 (108)
353 PF09463 Opy2: Opy2 protein; 44.0 14 0.0003 26.1 1.3 20 24-44 4-24 (35)
354 TIGR03504 FimV_Cterm FimV C-te 43.4 47 0.001 24.8 4.1 23 611-633 5-27 (44)
355 KOG0687 26S proteasome regulat 43.1 4.9E+02 0.011 28.6 16.0 142 347-492 57-208 (393)
356 KOG2659 LisH motif-containing 42.4 2.6E+02 0.0057 28.9 10.6 106 348-455 14-128 (228)
357 KOG0991 Replication factor C, 41.6 4.4E+02 0.0094 27.6 12.1 51 602-654 236-286 (333)
358 PF11838 ERAP1_C: ERAP1-like C 41.4 4.8E+02 0.01 28.1 19.3 29 535-563 201-229 (324)
359 COG4455 ImpE Protein of avirul 40.2 1.5E+02 0.0033 30.4 8.4 78 468-546 4-83 (273)
360 KOG1258 mRNA processing protei 39.9 7E+02 0.015 29.5 25.5 382 359-744 44-437 (577)
361 COG4785 NlpI Lipoprotein NlpI, 39.7 4.5E+02 0.0097 27.2 13.6 164 356-529 94-266 (297)
362 COG5187 RPN7 26S proteasome re 38.9 5.3E+02 0.011 27.8 14.6 67 430-496 115-186 (412)
363 PF10345 Cohesin_load: Cohesin 38.8 7.7E+02 0.017 29.7 34.3 195 326-527 29-252 (608)
364 COG2909 MalT ATP-dependent tra 37.9 9E+02 0.019 30.2 23.5 264 366-630 366-684 (894)
365 KOG4648 Uncharacterized conser 37.9 1.2E+02 0.0027 33.0 7.7 52 474-527 106-158 (536)
366 COG2976 Uncharacterized protei 37.8 4.5E+02 0.0097 26.7 14.3 129 570-740 54-189 (207)
367 COG5159 RPN6 26S proteasome re 37.8 5.5E+02 0.012 27.6 16.6 34 504-537 129-166 (421)
368 PRK15180 Vi polysaccharide bio 37.6 4.5E+02 0.0097 30.2 12.2 118 477-598 301-419 (831)
369 PF06552 TOM20_plant: Plant sp 35.4 4.7E+02 0.01 26.2 10.8 42 411-460 96-137 (186)
370 KOG0403 Neoplastic transformat 35.2 7.4E+02 0.016 28.4 14.3 23 399-421 349-371 (645)
371 PF13762 MNE1: Mitochondrial s 35.2 4.1E+02 0.009 25.5 12.6 92 457-548 29-128 (145)
372 TIGR03504 FimV_Cterm FimV C-te 34.8 74 0.0016 23.8 4.0 23 436-458 5-27 (44)
373 smart00028 TPR Tetratricopepti 34.7 76 0.0016 19.6 4.0 27 607-633 3-29 (34)
374 COG5159 RPN6 26S proteasome re 34.7 5.1E+02 0.011 27.8 11.4 47 609-655 129-180 (421)
375 KOG0687 26S proteasome regulat 34.4 6.6E+02 0.014 27.6 15.4 67 466-532 105-176 (393)
376 KOG4077 Cytochrome c oxidase, 34.1 1.9E+02 0.004 27.1 7.2 33 565-597 79-111 (149)
377 PF00244 14-3-3: 14-3-3 protei 33.6 4.5E+02 0.0098 27.4 11.3 40 436-475 7-46 (236)
378 PF09477 Type_III_YscG: Bacter 32.5 3.8E+02 0.0083 24.4 8.7 79 445-530 21-99 (116)
379 PF07575 Nucleopor_Nup85: Nup8 30.5 2E+02 0.0042 34.4 9.0 61 535-597 405-465 (566)
380 COG2178 Predicted RNA-binding 30.3 4.9E+02 0.011 26.3 10.0 38 341-388 20-57 (204)
381 PF06552 TOM20_plant: Plant sp 30.3 5.3E+02 0.012 25.8 10.2 62 602-671 65-138 (186)
382 PF04190 DUF410: Protein of un 30.1 6.8E+02 0.015 26.4 18.6 25 499-523 89-113 (260)
383 PF11846 DUF3366: Domain of un 29.8 1.4E+02 0.003 29.9 6.6 33 392-424 141-173 (193)
384 PF11848 DUF3368: Domain of un 29.6 1.6E+02 0.0035 22.3 5.2 31 372-402 14-44 (48)
385 KOG4648 Uncharacterized conser 29.4 2.4E+02 0.0052 30.9 8.2 54 508-563 105-159 (536)
386 PF07575 Nucleopor_Nup85: Nup8 29.2 1.3E+02 0.0028 36.0 7.1 28 394-421 404-431 (566)
387 cd08819 CARD_MDA5_2 Caspase ac 29.2 3E+02 0.0065 24.0 7.3 14 514-527 50-63 (88)
388 PF14689 SPOB_a: Sensor_kinase 29.0 1.3E+02 0.0027 24.2 4.9 26 608-633 26-51 (62)
389 PF11848 DUF3368: Domain of un 28.5 1.8E+02 0.0038 22.0 5.3 33 616-648 13-45 (48)
390 KOG4234 TPR repeat-containing 27.9 4.8E+02 0.01 26.6 9.4 88 370-459 105-197 (271)
391 KOG0292 Vesicle coat complex C 27.4 4E+02 0.0087 33.0 10.3 76 540-633 625-700 (1202)
392 PF14853 Fis1_TPR_C: Fis1 C-te 27.0 1.9E+02 0.0041 22.5 5.3 35 611-647 7-41 (53)
393 PF14689 SPOB_a: Sensor_kinase 27.0 1.7E+02 0.0036 23.5 5.2 21 401-421 29-49 (62)
394 PF11663 Toxin_YhaV: Toxin wit 26.6 53 0.0011 30.9 2.5 32 371-404 106-137 (140)
395 KOG4234 TPR repeat-containing 26.4 7.1E+02 0.015 25.5 11.9 19 405-423 105-123 (271)
396 PRK13342 recombination factor 25.9 1E+03 0.022 27.0 19.5 40 503-542 230-272 (413)
397 KOG0686 COP9 signalosome, subu 25.8 1E+03 0.022 27.0 14.9 174 466-648 151-352 (466)
398 KOG2168 Cullins [Cell cycle co 25.5 1.4E+03 0.03 28.5 22.8 45 365-411 330-375 (835)
399 COG5187 RPN7 26S proteasome re 25.3 8.8E+02 0.019 26.2 13.1 23 362-384 117-139 (412)
400 PF10475 DUF2450: Protein of u 25.3 4.6E+02 0.01 28.2 10.0 52 471-528 104-155 (291)
401 PF11846 DUF3366: Domain of un 25.1 2.7E+02 0.0059 27.7 7.7 33 601-633 140-172 (193)
402 COG0790 FOG: TPR repeat, SEL1 24.9 8.4E+02 0.018 25.8 22.4 148 339-496 56-222 (292)
403 PF09670 Cas_Cas02710: CRISPR- 24.7 8.2E+02 0.018 27.5 12.2 56 368-424 139-198 (379)
404 PRK10564 maltose regulon perip 24.6 1.5E+02 0.0032 32.0 5.7 42 392-433 253-295 (303)
405 KOG0991 Replication factor C, 24.5 8.4E+02 0.018 25.6 11.5 96 581-679 170-277 (333)
406 COG5108 RPO41 Mitochondrial DN 24.1 2.9E+02 0.0062 33.0 8.1 92 539-633 32-131 (1117)
407 COG0735 Fur Fe2+/Zn2+ uptake r 23.8 3.4E+02 0.0073 25.9 7.6 66 591-657 7-72 (145)
408 PF12926 MOZART2: Mitotic-spin 23.6 4.9E+02 0.011 22.6 8.0 42 451-492 29-70 (88)
409 COG0735 Fur Fe2+/Zn2+ uptake r 23.2 3.7E+02 0.008 25.7 7.8 22 542-563 27-48 (145)
410 PF09670 Cas_Cas02710: CRISPR- 23.0 7.5E+02 0.016 27.8 11.4 51 476-527 142-196 (379)
411 PHA01351 putative minor struct 22.7 1.4E+03 0.031 27.6 31.4 96 315-419 431-537 (1070)
412 PRK11619 lytic murein transgly 22.6 1.4E+03 0.031 27.7 28.9 254 362-632 101-373 (644)
413 PF10255 Paf67: RNA polymerase 22.5 8.8E+02 0.019 27.6 11.6 61 432-492 124-191 (404)
414 cd08819 CARD_MDA5_2 Caspase ac 22.4 4.6E+02 0.01 22.8 7.2 66 449-520 21-86 (88)
415 PF10579 Rapsyn_N: Rapsyn N-te 22.4 2.5E+02 0.0054 24.0 5.4 20 608-627 46-65 (80)
416 COG5108 RPO41 Mitochondrial DN 22.1 3.8E+02 0.0082 32.1 8.6 76 365-443 33-116 (1117)
417 KOG4077 Cytochrome c oxidase, 22.1 3.8E+02 0.0082 25.2 6.9 58 519-577 68-125 (149)
418 PF11663 Toxin_YhaV: Toxin wit 21.5 95 0.0021 29.3 3.1 35 333-370 104-138 (140)
419 PRK10564 maltose regulon perip 20.9 1.6E+02 0.0035 31.8 5.1 35 463-497 254-289 (303)
420 PF10579 Rapsyn_N: Rapsyn N-te 20.8 2E+02 0.0043 24.6 4.5 45 617-661 18-64 (80)
421 KOG1464 COP9 signalosome, subu 20.7 1E+03 0.023 25.3 27.5 92 539-632 149-259 (440)
422 KOG0686 COP9 signalosome, subu 20.7 1.3E+03 0.027 26.3 14.0 63 397-459 152-216 (466)
423 PF02847 MA3: MA3 domain; Int 20.5 3.5E+02 0.0075 24.1 6.8 22 400-421 7-28 (113)
424 PRK09857 putative transposase; 20.2 5.3E+02 0.011 27.9 9.1 64 575-639 211-274 (292)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.8e-61 Score=589.15 Aligned_cols=571 Identities=23% Similarity=0.294 Sum_probs=468.0
Q ss_pred CCCCchhhhhhhhhccCCCCcCCCCCCCchhhhHhhhcCCchHHHHHHHHHhccCCchHHHHHhhcCCCCCHHHHHHHHH
Q 003028 256 LQPSDAKVVECVSERFSKPSREMKIPAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLK 335 (856)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~iL~~~~~~~~~~~~l~~~~~~~~~~~~~~vL~ 335 (856)
...|....+..+++.+..+...+........+++.....+ ..+.+..+++.+. .|+..+++.++.
T Consensus 381 ~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-~~~eAl~lf~~M~--------------~pd~~Tyn~LL~ 445 (1060)
T PLN03218 381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-AVKEAFRFAKLIR--------------NPTLSTFNMLMS 445 (1060)
T ss_pred HHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-CHHHHHHHHHHcC--------------CCCHHHHHHHHH
Confidence 3456677777777766543211100000111222233333 3444555555543 289999999998
Q ss_pred hh---hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003028 336 QL---QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLN 412 (856)
Q Consensus 336 ~l---~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~ 412 (856)
.+ ++.+.|+++|+.|.+ .|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|+++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 76 688899999999974 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003028 413 EALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQA--AGLSPDTFTYSVIINCLGKAGHLQAAHQLFCE 490 (856)
Q Consensus 413 ~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~--~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~ 490 (856)
+|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 57899999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003028 491 MVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDE 570 (856)
Q Consensus 491 m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 570 (856)
|.+.|+.|+..+|+.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003028 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCC 650 (856)
Q Consensus 571 ~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~ 650 (856)
.+|+.||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCC-----------------------CCcccHHHHHHHHHHHHhcCCCC
Q 003028 651 TEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPG-----------------------PDGQNVRDHVGSFLEMMHSEDRE 707 (856)
Q Consensus 651 ~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~-----------------------~~~~~~~~~a~~l~~~~~~~~~~ 707 (856)
++.|++++|..+++.|.+.|..++..++..+... .....+.+.|..+++.|...+..
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999886554332211100 00011234455555555555544
Q ss_pred ch-----------------------------------HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCcccccCce
Q 003028 708 SK-----------------------------------RGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMS 752 (856)
Q Consensus 708 ~~-----------------------------------~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~~Pd~~t~~~~~ 752 (856)
|+ ..+|++||+++++ ..++|+.+|++|...|+.|+...-..
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~~~~~-- 920 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEAASLGVVPSVSFKKS-- 920 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcccccC--
Confidence 44 4556666666532 23689999999999999998764333
Q ss_pred eeeeccccccchhhHHHHHHHHHHHHHHHHHcCC-CCCceeeeeecccc-----C--CcccchHHHHHHHHHHhhcCCCC
Q 003028 753 YWLINLHVMSDGTAVIALSRTLAWFRKQMLISGV-GPSRIDIVTGWGRR-----S--RVTGTSLVRQAVQELLHMFSFPF 824 (856)
Q Consensus 753 ~w~~~~~~l~~g~a~~g~~~~l~~~~~~m~~~g~-~Pd~it~i~~l~~~-----~--~~~~~~~l~~a~~~ll~~~~~pf 824 (856)
-|.++++.|..|.|...+..|+.-+. +..+.|. .|.....+..=+++ | ....++.+.++++.+|..+..||
T Consensus 921 ~~~~d~~~~~~~aa~~~l~~wl~~~~-~~~~~g~~lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~ 999 (1060)
T PLN03218 921 PIVIDAEELPVFAAEVYLLTILKGLK-HRLAAGAKLPNVTILLPTEKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPY 999 (1060)
T ss_pred ceEEEcccCcchhHHHHHHHHHHHHH-HHHhccCcCCcceeeeccccceeeccCCchhHHHHHHHHHHHHHHHHHhCCCC
Confidence 79999999999999999999999995 4556664 44443312221221 1 11223558899999999999999
Q ss_pred cccCCCceEEEecchHHHHHhhhc
Q 003028 825 FTENGNSGCFVGCGEPLNKWLLQS 848 (856)
Q Consensus 825 ~~~~~~~gc~v~~~~~~~~wl~~~ 848 (856)
.-.... |+|...+..+..||+..
T Consensus 1000 ~~~~~~-g~~~~~~~~~~~wl~~~ 1022 (1060)
T PLN03218 1000 QGSESH-GKLRINGLSLRRWFQPK 1022 (1060)
T ss_pred CCCCCC-CeEEeccHHHHHHhccc
Confidence 998878 99999999999999763
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-57 Score=554.16 Aligned_cols=515 Identities=17% Similarity=0.236 Sum_probs=437.5
Q ss_pred chhhhHhhhcCCchHHHHHHHHHhccCCchHHHHHhhcCC-CCCHHHHHHHHHhh---hChhHHHHHHHHHHHhCCCCCC
Q 003028 284 LAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNY-SMDAYQANQVLKQL---QDHTVALGFFNWLRRQAGFKHD 359 (856)
Q Consensus 284 ~~~~~r~~~~~~~~~~~i~~iL~~~~~~~~~~~~l~~~~~-~~~~~~~~~vL~~l---~~~~~Al~~f~~m~~~~g~~pd 359 (856)
...++.++++.|+ .+.+..++++|. ..+. .++...+..++..+ +....|+.+|+.|.. ||
T Consensus 373 ~~~~y~~l~r~G~-l~eAl~Lfd~M~----------~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd 436 (1060)
T PLN03218 373 YIDAYNRLLRDGR-IKDCIDLLEDME----------KRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PT 436 (1060)
T ss_pred HHHHHHHHHHCcC-HHHHHHHHHHHH----------hCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CC
Confidence 3456666666655 566667777664 3343 45555666665544 578899999988863 89
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.||.+
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCCHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVN--QGCIPNLVTYNIMIALQAKARNYQ 517 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~--~g~~pd~~ty~~Li~~~~~~g~~~ 517 (856)
|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999999999999999986 578999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 518 SALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 518 ~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
+|+++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||++|++.|++++|.++|++|.
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHH
Q 003028 598 QAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFL 677 (856)
Q Consensus 598 ~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~ 677 (856)
+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|..++++|...|..++...
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766655
Q ss_pred HhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH----hCC-------------------ChhHHHHHHH
Q 003028 678 LSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLH----KSG-------------------LKEEAGSVWE 734 (856)
Q Consensus 678 ~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~----k~G-------------------~~eeA~~lf~ 734 (856)
+..+...+...+..+.+..+++.|...+..|+..+|++|+++|. +++ ..++|+.+|+
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 55444444444567889999999999999999999999998743 332 2367999999
Q ss_pred HHHhCCCCCCcccccCceeeeeccccccchhhHHHHHHHHHHHHHHHHHcCCCCCceeeeeeccccCCcccchHHHHHHH
Q 003028 735 VAAQKNVYPDAVKEKGMSYWLINLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQ 814 (856)
Q Consensus 735 ~m~~~~~~Pd~~t~~~~~~w~~~~~~l~~g~a~~g~~~~l~~~~~~m~~~g~~Pd~it~i~~l~~~~~~~~~~~l~~a~~ 814 (856)
+|.+.|+.||..||.. ++.+....+....+..+++.|...+..|+..++.+.+-.++. ..++|+.
T Consensus 837 eM~~~Gi~Pd~~T~~~----------vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~-----~~~~A~~ 901 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQ----------VLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE-----YDPRAFS 901 (1060)
T ss_pred HHHHCCCCCCHHHHHH----------HHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc-----ChHHHHH
Confidence 9999999999887754 223333323223333344566666666776654333322322 1357998
Q ss_pred HHHhhcCCCCcccCC
Q 003028 815 ELLHMFSFPFFTENG 829 (856)
Q Consensus 815 ~ll~~~~~pf~~~~~ 829 (856)
.+..|...++.|+..
T Consensus 902 l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 902 LLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHcCCCCCcc
Confidence 888888888888864
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-58 Score=572.53 Aligned_cols=529 Identities=15% Similarity=0.169 Sum_probs=472.7
Q ss_pred CchhhhHhhhcCCchHHHHHHHHHhccCCchHHHHHhhcCCCCCHHHHHHHHHhh---hChhHHHHHHHHHHHhCCCCCC
Q 003028 283 GLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLKQL---QDHTVALGFFNWLRRQAGFKHD 359 (856)
Q Consensus 283 ~~~~~~r~~~~~~~~~~~i~~iL~~~~~~~~~~~~l~~~~~~~~~~~~~~vL~~l---~~~~~Al~~f~~m~~~~g~~pd 359 (856)
.+..+++.++..|. .+.+..+++++. ..+..|+..++..+++.+ +....|..++..+.+ .+..++
T Consensus 53 ~~n~~i~~l~~~g~-~~~A~~l~~~m~----------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~ 120 (857)
T PLN03077 53 DSNSQLRALCSHGQ-LEQALKLLESMQ----------ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS-SHPSLG 120 (857)
T ss_pred hHHHHHHHHHhCCC-HHHHHHHHHHHH----------hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHH-cCCCCC
Confidence 34567788888876 555666666653 567789999988888766 467789999999874 677899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
...+|+||.+|++.|+++.|.++|++|.+ ||..+||+||.+|++.|++++|+++|++|...|+.||..||+.+|.+
T Consensus 121 ~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred chHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 99999999999999999999999999974 79999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSA 519 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A 519 (856)
|++.+++..+.+++..|.+.|+.||..+|++||.+|+++|++++|.++|++|.. ||.++||+||.+|++.|++++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eA 272 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEG 272 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999975 7999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 520 LKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA 599 (856)
Q Consensus 520 ~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~ 599 (856)
+++|++|...|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.||.+|++.|++++|.++|++|.
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-- 350 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-- 350 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHh
Q 003028 600 GLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLS 679 (856)
Q Consensus 600 g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~ 679 (856)
.||..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|...+..+..
T Consensus 351 --~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n 428 (857)
T PLN03077 351 --TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428 (857)
T ss_pred --CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999999876655544
Q ss_pred cCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCccccc----------
Q 003028 680 MPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEK---------- 749 (856)
Q Consensus 680 l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~~Pd~~t~~---------- 749 (856)
.+.......+..+.|..+++.|.. ++..+||++|.+|++.|+.++|+++|++|.. ++.||..|+.
T Consensus 429 ~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 429 ALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 333322233457788888888764 4566799999999999999999999999975 5888887653
Q ss_pred -------------------------------------------------CceeeeeccccccchhhHHHHHHHHHHHHHH
Q 003028 750 -------------------------------------------------GMSYWLINLHVMSDGTAVIALSRTLAWFRKQ 780 (856)
Q Consensus 750 -------------------------------------------------~~~~w~~~~~~l~~g~a~~g~~~~l~~~~~~ 780 (856)
+.++|+ .|+.+++.+|..+.+..++++
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n----~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWN----ILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHH----HHHHHHHHcCCHHHHHHHHHH
Confidence 234466 588999999988766666699
Q ss_pred HHHcCCCCCceeeeeeccccCCcccchHHHHHHHHHHhhc-CCCCcccCCCceEEE------ecchHHHHHhhh
Q 003028 781 MLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHMF-SFPFFTENGNSGCFV------GCGEPLNKWLLQ 847 (856)
Q Consensus 781 m~~~g~~Pd~it~i~~l~~~~~~~~~~~l~~a~~~ll~~~-~~pf~~~~~~~gc~v------~~~~~~~~wl~~ 847 (856)
|.+.|+.||.+||...+..|+ +.|.+++|.++|..|. ..++.|+..+|+|++ |..+++.+++++
T Consensus 580 M~~~g~~Pd~~T~~~ll~a~~---~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 580 MVESGVNPDEVTFISLLCACS---RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHcCCCCCcccHHHHHHHHh---hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999998887764 5788999999999888 599999999999999 888999998876
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.8e-58 Score=567.46 Aligned_cols=539 Identities=17% Similarity=0.169 Sum_probs=474.7
Q ss_pred cCcccccccccCCCCCCchhhhhhhhhccCCCCcCCCCCCCchhhhHhhhcCCchHHHHHHHHHhccCCchHHHHHhhcC
Q 003028 243 AHSNRLNSNFKSNLQPSDAKVVECVSERFSKPSREMKIPAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTN 322 (856)
Q Consensus 243 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~iL~~~~~~~~~~~~l~~~~ 322 (856)
+.....++-+..+...|....+..+++.+..| ....|..++.++++.|. .+.+..+++++. ..|
T Consensus 119 ~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~-----d~~~~n~li~~~~~~g~-~~~A~~~f~~M~----------~~g 182 (857)
T PLN03077 119 LGVRLGNAMLSMFVRFGELVHAWYVFGKMPER-----DLFSWNVLVGGYAKAGY-FDEALCLYHRML----------WAG 182 (857)
T ss_pred CCchHHHHHHHHHHhCCChHHHHHHHhcCCCC-----CeeEHHHHHHHHHhCCC-HHHHHHHHHHHH----------HcC
Confidence 33334455556667888888899999888754 23468889999999876 677777887774 458
Q ss_pred CCCCHHHHHHHHHhh---hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 323 YSMDAYQANQVLKQL---QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYN 399 (856)
Q Consensus 323 ~~~~~~~~~~vL~~l---~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~ 399 (856)
+.||.++++.+++.+ ++...+.+++..|.+ .|+.||..+||+||.+|+++|++++|.++|++|.+ ||.++||
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n 257 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR-FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWN 257 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHH-cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhH
Confidence 999999999999987 466789999999984 79999999999999999999999999999999974 7999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003028 400 RLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG 479 (856)
Q Consensus 400 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g 479 (856)
+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|+++|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 337 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003028 480 HLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFA 559 (856)
Q Consensus 480 ~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~ 559 (856)
++++|.++|++|.. ||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++
T Consensus 338 ~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 338 SWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred CHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999974 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003028 560 EMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS 639 (856)
Q Consensus 560 ~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd 639 (856)
.|.+.|+.|+..+|+.||++|+++|++++|.++|++|. .+|.++||.||.+|++.|+.++|+++|++|.. ++.||
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd 488 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPN 488 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCC
Confidence 99999999999999999999999999999999999996 47999999999999999999999999999986 69999
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 003028 640 LQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDF 719 (856)
Q Consensus 640 ~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~ 719 (856)
..||..+|.+|++.|.++.+.+++..+.+.|...+.++...+.......+..+.+..+++.+ .++..+||++|.+
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~ 563 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG 563 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH
Confidence 99999999999999999999999999999998766555443333222234566677777765 5688899999999
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCcccccCceeeeeccccccchhhHHHHHHHHHHHHHHHH-HcCCCCCcee---eee
Q 003028 720 LHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLINLHVMSDGTAVIALSRTLAWFRKQML-ISGVGPSRID---IVT 795 (856)
Q Consensus 720 y~k~G~~eeA~~lf~~m~~~~~~Pd~~t~~~~~~w~~~~~~l~~g~a~~g~~~~l~~~~~~m~-~~g~~Pd~it---~i~ 795 (856)
|++.|+.++|+++|++|.+.|+.||.+||.. ++.++...|..+....++++|. ..|+.|+..+ ++.
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~----------ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFIS----------LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHH----------HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 9999999999999999999999999988754 5566777777666666668998 7899999854 677
Q ss_pred eccccCCcccchHHHHHHHHHHhhcCCCCcccCCCceEEE
Q 003028 796 GWGRRSRVTGTSLVRQAVQELLHMFSFPFFTENGNSGCFV 835 (856)
Q Consensus 796 ~l~~~~~~~~~~~l~~a~~~ll~~~~~pf~~~~~~~gc~v 835 (856)
++++.|+ +++|.+.+..| |+.|+...++.++
T Consensus 634 ~l~r~G~------~~eA~~~~~~m---~~~pd~~~~~aLl 664 (857)
T PLN03077 634 LLGRAGK------LTEAYNFINKM---PITPDPAVWGALL 664 (857)
T ss_pred HHHhCCC------HHHHHHHHHHC---CCCCCHHHHHHHH
Confidence 7777776 89999866553 6788866544443
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.8e-53 Score=511.20 Aligned_cols=478 Identities=17% Similarity=0.224 Sum_probs=420.4
Q ss_pred CCCchhhhHhhhcCCchHHHHHHHHHhccCCchHHHHHhhcCCCCCHHHHHHHHHhh---hChhHHHHHHHHHHHhCCCC
Q 003028 281 PAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLKQL---QDHTVALGFFNWLRRQAGFK 357 (856)
Q Consensus 281 ~~~~~~~~r~~~~~~~~~~~i~~iL~~~~~~~~~~~~l~~~~~~~~~~~~~~vL~~l---~~~~~Al~~f~~m~~~~g~~ 357 (856)
...|..++.++...|+ .+.+..+++.+. ...+..|+..+++.++..+ ++.+.|.+++..|.+ .|+.
T Consensus 87 ~~~~~~~i~~l~~~g~-~~~Al~~f~~m~---------~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-~g~~ 155 (697)
T PLN03081 87 GVSLCSQIEKLVACGR-HREALELFEILE---------AGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-SGFE 155 (697)
T ss_pred ceeHHHHHHHHHcCCC-HHHHHHHHHHHH---------hcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCC
Confidence 3467778888888776 455556666553 1234679999999999876 577889999999974 7999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 358 HDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 358 pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
||..+||.|+++|+++|+++.|.++|++|.+ ||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 231 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH
Confidence 9999999999999999999999999999974 899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQ 517 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~ 517 (856)
.+|++.|..+.+.+++..+.+.|+.+|..+|++||++|+++|++++|.++|++|.+ +|.++||+||.+|++.|+++
T Consensus 232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~ 307 (697)
T PLN03081 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSE 307 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999975 69999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 518 SALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 518 ~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
+|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.||++|+++|++++|.++|++|.
T Consensus 308 eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH-cCCChHHH
Q 003028 598 QAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAV-SGHPAHMF 676 (856)
Q Consensus 598 ~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~-~g~~~~~~ 676 (856)
.||..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.+|.+|++.|..+++..+++.|.+ .|..+...
T Consensus 388 ----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 388 ----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred ----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 4899999999999999999999999999999999999999999999999999999999999999986 47655443
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCcccccCceeeee
Q 003028 677 LLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLI 756 (856)
Q Consensus 677 ~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~~Pd~~t~~~~~~w~~ 756 (856)
.+..+.......+..++|..+++.+ +..|+..+|++|+.+|.+.|+++.|..+++++.+ ..|+... .+.
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~-----~y~- 532 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLN-----NYV- 532 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCc-----chH-
Confidence 3333333333344567777776654 5678899999999999999999999999999964 4454321 222
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHcCCCCCc-eeeee
Q 003028 757 NLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSR-IDIVT 795 (856)
Q Consensus 757 ~~~~l~~g~a~~g~~~~l~~~~~~m~~~g~~Pd~-it~i~ 795 (856)
.++..++..|..+.+..++++|.+.|+.... .+++.
T Consensus 533 ---~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~ 569 (697)
T PLN03081 533 ---VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIE 569 (697)
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEE
Confidence 3677888888887777888999999986443 44443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-51 Score=497.29 Aligned_cols=520 Identities=17% Similarity=0.203 Sum_probs=436.6
Q ss_pred CcccCcccccccccCCCCCCchhhhhhhhhccCCCCcCCCCCCCchhhhHhhhcCCchHHHHHHHHHhccCCchHHHHHh
Q 003028 240 RSKAHSNRLNSNFKSNLQPSDAKVVECVSERFSKPSREMKIPAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALG 319 (856)
Q Consensus 240 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~iL~~~~~~~~~~~~l~ 319 (856)
..+.+..++++.+..+...|....+..+++.+............+..+++..+..++ .+....++..+ .
T Consensus 82 ~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~-~~~a~~l~~~m----------~ 150 (697)
T PLN03081 82 QIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS-IRCVKAVYWHV----------E 150 (697)
T ss_pred cCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHH----------H
Confidence 344455678888888888888888888887764321111111233445555555443 44444444443 4
Q ss_pred hcCCCCCHHHHHHHHHhh---hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003028 320 NTNYSMDAYQANQVLKQL---QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVV 396 (856)
Q Consensus 320 ~~~~~~~~~~~~~vL~~l---~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ 396 (856)
..|+.|+..+++.++..+ ++.+.|.++|+.|.+ ||..+||++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 151 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 225 (697)
T PLN03081 151 SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225 (697)
T ss_pred HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence 678899999999999876 688999999999964 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
+|+.++.+|++.|..+.+.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|. .+|..+||+||.+|+
T Consensus 226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~ 301 (697)
T PLN03081 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYA 301 (697)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999995 469999999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003028 477 KAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEA 556 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~ 556 (856)
+.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.+
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CC
Q 003028 557 VFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN-LG 635 (856)
Q Consensus 557 l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~-~g 635 (856)
+|++|.+ ||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|.+.|++++|.++|+.|.+ .|
T Consensus 382 vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 382 VFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 9999864 688999999999999999999999999999999999999999999999999999999999999986 69
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHH-HHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHH
Q 003028 636 LKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMF-LLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVD 714 (856)
Q Consensus 636 ~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~-~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 714 (856)
+.|+..+|++++++|++.|++++|..+++.| +..++.. +..++..+.. .+..+.+..+.+.+...++. +..+|+
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~-~g~~~~a~~~~~~l~~~~p~-~~~~y~ 532 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRI-HKNLELGRLAAEKLYGMGPE-KLNNYV 532 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHhCCCCC-CCcchH
Confidence 9999999999999999999999999887765 3332222 2222222212 23345666666666544332 456899
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCcccccCceeeee---ccccccchhhHH----HHHHHHHHHHHHHHHcCCC
Q 003028 715 AVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLI---NLHVMSDGTAVI----ALSRTLAWFRKQMLISGVG 787 (856)
Q Consensus 715 aLi~~y~k~G~~eeA~~lf~~m~~~~~~Pd~~t~~~~~~w~~---~~~~l~~g~a~~----g~~~~l~~~~~~m~~~g~~ 787 (856)
.|+++|++.|++++|.+++++|.++|+.+. ...+|.- .+|.+..+...| ...+.+..+..+|.+.|..
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~-----~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~ 607 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGLSMH-----PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYV 607 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccC-----CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999998643 2356742 257777665433 2345677778999999999
Q ss_pred CCceee
Q 003028 788 PSRIDI 793 (856)
Q Consensus 788 Pd~it~ 793 (856)
||...+
T Consensus 608 ~~~~~~ 613 (697)
T PLN03081 608 AEENEL 613 (697)
T ss_pred CCcchh
Confidence 997543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=6.6e-20 Score=228.31 Aligned_cols=389 Identities=9% Similarity=0.013 Sum_probs=228.3
Q ss_pred hhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
.++++.|+.+++.+... ...+..+|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+
T Consensus 444 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred cCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 35666666666666542 23345566666666666666666666666665532 2344555666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 003028 417 VFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC 496 (856)
Q Consensus 417 lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~ 496 (856)
.|+++.... +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..+...|.+.|++++|..+++.+.+..
T Consensus 521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 521 RFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 666665543 3455566666666666666666666666665543 3345556666666666666666666666665532
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 003028 497 IPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLL 576 (856)
Q Consensus 497 ~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~L 576 (856)
+.+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+..++..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 2355666666666666666666666666665542 2234455566666666666666666666666533 2345566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 003028 577 VDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSP 656 (856)
Q Consensus 577 i~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~ 656 (856)
+..+...|++++|..+++.+.+.. +.+...+..+...|...|++++|++.|+++.+. .|+..++..+..++...|++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCH
Confidence 666666666666666666666543 345556666666666666666666666666653 34445555666666666666
Q ss_pred chHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 003028 657 YDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVA 736 (856)
Q Consensus 657 ~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m 736 (856)
+++...++.+.+..+........+...+...++ .+.+...++.+....+ .+..+++.++..|.+.|+ .+|+.+++++
T Consensus 753 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD-YDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 666666666665555433333322222222222 2333334443333322 244556666666666666 6666666666
Q ss_pred HhC
Q 003028 737 AQK 739 (856)
Q Consensus 737 ~~~ 739 (856)
.+.
T Consensus 830 ~~~ 832 (899)
T TIGR02917 830 LKL 832 (899)
T ss_pred Hhh
Confidence 554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=1.2e-19 Score=226.09 Aligned_cols=387 Identities=13% Similarity=0.050 Sum_probs=196.6
Q ss_pred hhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
.++++.|.+.|+.+.... +.+..++..+...+.+.|++++|..+|+++.+.+ +.+...+..++..|.+.|++++|.+
T Consensus 512 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred CCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHH
Confidence 345555555555554321 2234455555555555555555555555554432 2344455555555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 003028 417 VFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC 496 (856)
Q Consensus 417 lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~ 496 (856)
+++++.... +.+..+|..+..+|.+.|++++|...|+++.+.. +.+...+..+..+|.+.|++++|..+|+.+.+..
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 665 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK- 665 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 555555432 3445555555555555555555555555555432 2244455555555555555555555555555432
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 003028 497 IPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLL 576 (856)
Q Consensus 497 ~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~L 576 (856)
+.+..+|..++..+...|++++|..+++.+.... +.+...+..+...+...|++++|...|..+.... |+..++..+
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l 742 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKL 742 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHH
Confidence 1234555555555555555555555555555443 2233444555555555555566655555555433 233445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 003028 577 VDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSP 656 (856)
Q Consensus 577 i~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~ 656 (856)
..++.+.|++++|.+.++.+.+.. +.+...++.+...|...|++++|.++|+++.+.. ..+...+..+...+...|+
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-
Confidence 555555566666555555555432 3345555555555555566666666665555532 2334455555555555555
Q ss_pred chHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 003028 657 YDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVA 736 (856)
Q Consensus 657 ~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m 736 (856)
.+|...++......+.....+..+...+...++ .+.+..+++.+...++. +..++..++.+|.+.|++++|.++|++|
T Consensus 820 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 820 PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE-ADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555544443333332222211112222 23333333333333322 4445555566666666666666666555
Q ss_pred H
Q 003028 737 A 737 (856)
Q Consensus 737 ~ 737 (856)
.
T Consensus 898 ~ 898 (899)
T TIGR02917 898 L 898 (899)
T ss_pred h
Confidence 3
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=2.4e-17 Score=186.50 Aligned_cols=296 Identities=15% Similarity=0.167 Sum_probs=196.4
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN---VVTYNRLIHSYGRANYLNEA 414 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd---~~ty~~Li~~~~~~g~~~~A 414 (856)
++++.|+..|..+.+.. ..+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|++++|
T Consensus 49 ~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred CChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 56777777777776531 22445677777777777777777777777765421111 24566777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHH
Q 003028 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPD----TFTYSVIINCLGKAGHLQAAHQLFCE 490 (856)
Q Consensus 415 ~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd----~~ty~~Li~~y~k~g~~~~A~~lf~~ 490 (856)
+.+|+++.+.. +.+..+++.++.++.+.|++++|.++++.+.+.+..+. ...+..+...+.+.|++++|.++|++
T Consensus 127 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 77777776542 44566777777777777777777777777776543221 12344566667777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003028 491 MVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDE 570 (856)
Q Consensus 491 m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 570 (856)
+.+.. +.+...+..+...|.+.|++++|+++|+++...+......++..+..+|...|++++|...++.+.+.. |+.
T Consensus 206 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~ 282 (389)
T PRK11788 206 ALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGA 282 (389)
T ss_pred HHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc
Confidence 76543 224556666777777777777777777777654322223456667777777777777777777776643 455
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHH
Q 003028 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR---VGQLSDAYHLLQGMLNLGLKPSLQ 641 (856)
Q Consensus 571 ~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~---~g~~e~A~~l~~~M~~~g~~Pd~~ 641 (856)
..+..++..+.+.|++++|..+|+++.+. .|+..+++.++..+.. .|+.++++.+|++|.+.++.|+..
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 55677777777777777777777776654 4777777777766664 447777777777777766665554
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=4.8e-17 Score=184.05 Aligned_cols=296 Identities=13% Similarity=0.048 Sum_probs=244.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc
Q 003028 367 VGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD---RVTYCTLIDIHAKA 443 (856)
Q Consensus 367 i~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd---~~ty~~Ll~~~~k~ 443 (856)
...+...|++++|...|.++.+.+ +.+..+|..+...|...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445678899999999999999863 33567899999999999999999999999987532222 35688889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHH
Q 003028 444 GFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPN----LVTYNIMIALQAKARNYQSA 519 (856)
Q Consensus 444 g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Li~~~~~~g~~~~A 519 (856)
|++++|..+|+++.+. .+.+..+++.++..|.+.|++++|.++|+.+.+.+..+. ...|..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999876 345788999999999999999999999999988654332 22456778888999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 520 LKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA 599 (856)
Q Consensus 520 ~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~ 599 (856)
+.+|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998754 22456777888999999999999999999987643333567889999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHc
Q 003028 600 GLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTE---ARSPYDMGFCHELMAVS 669 (856)
Q Consensus 600 g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~---~g~~~~a~~l~~~m~~~ 669 (856)
.|+...+..++..|.+.|++++|..+|+++++. .|+..++..++..+.. .|+.+++..+++.+.+.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 477777899999999999999999999999874 7999999988887664 34666676666666554
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.72 E-value=1.8e-13 Score=164.17 Aligned_cols=388 Identities=13% Similarity=0.045 Sum_probs=275.7
Q ss_pred hhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003028 336 QLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415 (856)
Q Consensus 336 ~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 415 (856)
..++++.|+..|..... ..|+...|..+..+|.+.|++++|.+.++...+.. +.+...|..+..+|...|++++|+
T Consensus 139 ~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34789999999998875 45788889999999999999999999999998752 235678888999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHH--------------------------
Q 003028 416 DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGL--SPDTFT-------------------------- 467 (856)
Q Consensus 416 ~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~--~pd~~t-------------------------- 467 (856)
..|......+ ..+......++.-+... .+.....+..+... .|....
T Consensus 215 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 215 LDLTASCIID-GFRNEQSAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHhC-CCccHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 9988776543 12222222222222111 11111111111100 000000
Q ss_pred -HHHHHHHH------HccCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 003028 468 -YSVIINCL------GKAGHLQAAHQLFCEMVNQG-CIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD-KVT 537 (856)
Q Consensus 468 -y~~Li~~y------~k~g~~~~A~~lf~~m~~~g-~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-~~t 537 (856)
-..++..+ ...+++++|.+.|+...+.+ ..| ....|+.+...+...|++++|+..|++..+. .|+ ...
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~ 367 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQS 367 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHH
Confidence 00011111 22467899999999998764 223 4567888888899999999999999998875 344 557
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 538 YSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR 617 (856)
Q Consensus 538 y~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~ 617 (856)
|..+...+...|++++|...|+.+.+.. ..+..+|..+...|...|++++|...|++..+.. +.+...|..+...|.+
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 8888888999999999999999998764 3467889999999999999999999999998753 4467788889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHH------HHhcCCCCCCcccH
Q 003028 618 VGQLSDAYHLLQGMLNLGLKPS-LQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMF------LLSMPSPGPDGQNV 690 (856)
Q Consensus 618 ~g~~e~A~~l~~~M~~~g~~Pd-~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~------~~~l~~~~~~~~~~ 690 (856)
.|++++|+..|++.++. .|+ ...|..+-..+...|++++|...++...+..+..... +...........+.
T Consensus 446 ~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 446 EGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 99999999999999873 454 5777888888999999999999999887765532111 00000000011124
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 003028 691 RDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQK 739 (856)
Q Consensus 691 ~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~ 739 (856)
.+.+..+++.....++. +...+..++..|...|++++|+++|++..+.
T Consensus 524 ~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 524 FIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45555566554444433 3446889999999999999999999998765
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.71 E-value=7.3e-13 Score=169.41 Aligned_cols=397 Identities=10% Similarity=0.012 Sum_probs=252.5
Q ss_pred HhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHH------------H
Q 003028 335 KQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQP-NVVTYNR------------L 401 (856)
Q Consensus 335 ~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~------------L 401 (856)
...++++.|+..|+...+.. ..+...+..|..++.+.|++++|...|++..+..-.. +...|.. +
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 34578899999999887632 2367788899999999999999999999988753211 1122222 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 003028 402 IHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHL 481 (856)
Q Consensus 402 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~ 481 (856)
...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..+...|. .++.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCH
Confidence 345678899999999999998764 4566778888899999999999999999998753 234455555554443 2344
Q ss_pred HHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 003028 482 QAAHQLFCEMVNQGCI--------PNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDE 553 (856)
Q Consensus 482 ~~A~~lf~~m~~~g~~--------pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~ 553 (856)
++|..+++.+...... .....+..+...+...|++++|++.|++..+... -+...+..+...|...|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 5555554433211000 0011233344444455555555555555544321 123334444445555555555
Q ss_pred HHHHHHHHHHcCCCCCHhhH--------------------------------------------HHHHHHHHhcCCHHHH
Q 003028 554 AEAVFAEMRRKNWVPDEPVY--------------------------------------------GLLVDLWGKAGNVRKA 589 (856)
Q Consensus 554 A~~l~~~m~~~g~~pd~~~y--------------------------------------------~~Li~~~~k~g~~~~A 589 (856)
|...++.+.+... .+...+ ..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 5555555443221 111111 2234455566666777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003028 590 WEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 590 ~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~ 669 (856)
..+++. .+.+...+..+...|.+.|++++|++.|++.++.. ..+...+..+...+...|+.++|...++.+...
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 666651 24566777889999999999999999999999842 234678888889999999999999999988876
Q ss_pred CCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCC-C-c---hHHHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCC
Q 003028 670 GHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDR-E-S---KRGLVDAVVDFLHKSGLKEEAGSVWEVAAQ-KNVYP 743 (856)
Q Consensus 670 g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~-~-~---~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~-~~~~P 743 (856)
.+........+...+...++ .+++..+++.+..... . + +..++..+...+.+.|++++|++.|++... .++.|
T Consensus 667 ~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGD-TAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCC-HHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 65433333322222222233 4555556665554322 1 2 334666778999999999999999998864 34555
Q ss_pred Cc
Q 003028 744 DA 745 (856)
Q Consensus 744 d~ 745 (856)
+.
T Consensus 746 ~~ 747 (1157)
T PRK11447 746 TR 747 (1157)
T ss_pred CC
Confidence 43
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.70 E-value=1.7e-13 Score=164.46 Aligned_cols=339 Identities=10% Similarity=-0.011 Sum_probs=260.2
Q ss_pred hcCCCCCHHHHHHHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 320 NTNYSMDAYQANQVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYN 399 (856)
Q Consensus 320 ~~~~~~~~~~~~~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~ 399 (856)
..+..-....+..-+..-+++..|+.+++.......- +...+..++..+...|+++.|...|+.+.+.. +.+...|.
T Consensus 38 ~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~ 114 (656)
T PRK15174 38 SAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVL 114 (656)
T ss_pred hcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 3344444444444444447899999999988764433 33456666677778999999999999998752 33567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003028 400 RLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG 479 (856)
Q Consensus 400 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g 479 (856)
.+...+.+.|++++|.+.|+++.+.. +.+...+..+..++...|++++|...++.+...... +...+..+ ..+...|
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g 191 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKS 191 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcC
Confidence 88899999999999999999998753 445778888999999999999999999988766332 33344333 3478899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH----HH
Q 003028 480 HLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDE----AE 555 (856)
Q Consensus 480 ~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~----A~ 555 (856)
++++|..+++.+.+....++...+..+...+...|++++|+..|+++.... +.+...+..+...+...|++++ |.
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 999999999998776433455556666788899999999999999998764 2346677788888999999986 79
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003028 556 AVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLG 635 (856)
Q Consensus 556 ~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g 635 (856)
..|+...+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|+..|+++.+.
T Consensus 271 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~- 347 (656)
T PRK15174 271 EHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE- 347 (656)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 9999988754 3367788999999999999999999999998753 345667888899999999999999999999874
Q ss_pred CCCCHHHH-HHHHHHHHhcCCcchHHHHHHHHHHc
Q 003028 636 LKPSLQTY-TLLLSCCTEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 636 ~~Pd~~ty-~~Ll~a~~~~g~~~~a~~l~~~m~~~ 669 (856)
.|+...+ ..+..++...|+.++|...++...+.
T Consensus 348 -~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 348 -KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred -CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5665433 33455678888888887776665544
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.69 E-value=2.4e-13 Score=149.45 Aligned_cols=402 Identities=15% Similarity=0.143 Sum_probs=316.8
Q ss_pred HHHHHHhhhChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHh
Q 003028 330 ANQVLKQLQDHTVALGFFNWLRRQAGFKH-DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNR-LIHSYGR 407 (856)
Q Consensus 330 ~~~vL~~l~~~~~Al~~f~~m~~~~g~~p-d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~-Li~~~~~ 407 (856)
+..+++.-++.+.|+..++.+.+. +| ....|..+..++...|+.+.|.+.|.+..+. .|+.....+ +-...-.
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHh
Confidence 345677778888999999988763 34 3567888999999999999999998888763 566555443 3344455
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 003028 408 ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPD-TFTYSVIINCLGKAGHLQAAHQ 486 (856)
Q Consensus 408 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd-~~ty~~Li~~y~k~g~~~~A~~ 486 (856)
.|++.+|...|.+..+.. +-=.+.|+.|-..+-..|+...|++.|++.... .|+ ...|-.|-+.|...+.++.|..
T Consensus 197 ~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 788999999998887653 223567888888889999999999999998875 343 6788889999999999999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003028 487 LFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRK 564 (856)
Q Consensus 487 lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~ 564 (856)
.+.+.... .| ..+.|..|...|...|..|-|+..|++..+. .|+ ...|+.|..++-..|+..+|++.+......
T Consensus 274 ~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 274 CYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99887764 33 5667888888999999999999999998875 455 568999999999999999999999998875
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HH
Q 003028 565 NWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN-VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL-QT 642 (856)
Q Consensus 565 g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd-~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~-~t 642 (856)
.. -.....+.|...|...|.+++|..+|....+ +.|. ...+|.|...|-++|++++|+..+++.+. +.|+. ..
T Consensus 350 ~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda 424 (966)
T KOG4626|consen 350 CP-NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADA 424 (966)
T ss_pred CC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHH
Confidence 43 3567788999999999999999999999887 3454 45789999999999999999999999986 88886 68
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q 003028 643 YTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHK 722 (856)
Q Consensus 643 y~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k 722 (856)
|+.+-..|...|+...|.+++...+..++...+....+...+.+.++..+++..+.+.++..+.-|+... -+..++--
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c--Nllh~lq~ 502 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC--NLLHCLQI 502 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh--HHHHHHHH
Confidence 8888888999999999999999999999887777777777778888999999999998887766666542 33333322
Q ss_pred CCCh-------hHHHHHHHHHHhCCCCCCcccccC
Q 003028 723 SGLK-------EEAGSVWEVAAQKNVYPDAVKEKG 750 (856)
Q Consensus 723 ~G~~-------eeA~~lf~~m~~~~~~Pd~~t~~~ 750 (856)
-.+| ++-.++.+.-.++...|....+.+
T Consensus 503 vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hs 537 (966)
T KOG4626|consen 503 VCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHS 537 (966)
T ss_pred HhcccchHHHHHHHHHHHHHHHhhhcCCccCcccc
Confidence 2222 344445555555666676655554
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.69 E-value=3.2e-13 Score=162.11 Aligned_cols=288 Identities=11% Similarity=0.051 Sum_probs=235.2
Q ss_pred hhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
.++++.|+..|+.+..... .+...+..+..++.+.|++++|...|++..... +.+...|..+...+...|++++|..
T Consensus 89 ~g~~~~A~~~l~~~l~~~P--~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNV--CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred cCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHH
Confidence 4799999999999986432 245578889999999999999999999998752 3467788999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 003028 417 VFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC 496 (856)
Q Consensus 417 lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~ 496 (856)
.++.+.... +.+...+..+ ..+...|++++|..+++.+.+....++...+..+...+...|++++|...|+.......
T Consensus 166 ~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p 243 (656)
T PRK15174 166 LARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL 243 (656)
T ss_pred HHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999887654 2333344333 45788999999999999988764344555666677889999999999999999987643
Q ss_pred CCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh
Q 003028 497 IPNLVTYNIMIALQAKARNYQS----ALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPV 572 (856)
Q Consensus 497 ~pd~~ty~~Li~~~~~~g~~~~----A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 572 (856)
.+...+..+...|...|++++ |+..|++..... +.+...+..+...+...|++++|...+++..+.. +.+...
T Consensus 244 -~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a 320 (656)
T PRK15174 244 -DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYV 320 (656)
T ss_pred -CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 367788889999999999986 899999988753 2346688889999999999999999999999864 335667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 573 YGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPT-CNSLLSAFLRVGQLSDAYHLLQGMLNL 634 (856)
Q Consensus 573 y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t-~n~Li~ay~~~g~~e~A~~l~~~M~~~ 634 (856)
+..+..+|.+.|++++|...|+.+.+. .|+... +..+..++...|+.++|...|++..+.
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 788899999999999999999999875 355433 444677899999999999999999873
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.68 E-value=9e-14 Score=152.68 Aligned_cols=367 Identities=18% Similarity=0.165 Sum_probs=305.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQP-NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYC-TL 436 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~-~L 436 (856)
-..+|..+.+++-..|++++|..++..+.+. .| .+..|..+..++...|+.+.|.+.|.+..+. .|+..... .+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 3568999999999999999999999999985 44 6789999999999999999999999998865 56655443 34
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCC
Q 003028 437 IDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPN-LVTYNIMIALQAKARN 515 (856)
Q Consensus 437 l~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd-~~ty~~Li~~~~~~g~ 515 (856)
-..+-..|++++|...|.+.++.. +--...|+.|-..+-..|++..|...|++..+. .|+ ...|-.|-..|-..+.
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 455556899999999999988763 223567888889999999999999999998875 343 5678889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 003028 516 YQSALKLYRDMQNAGFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYE 594 (856)
Q Consensus 516 ~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~ 594 (856)
+++|+..|.+.... .|+ ...|..+...|...|.+|.|...+++..+.... =...|+.|..++-..|++.+|...++
T Consensus 268 ~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 268 FDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred chHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHH
Confidence 99999999887764 455 567778888889999999999999999875422 35689999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCh
Q 003028 595 AMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL-QTYTLLLSCCTEARSPYDMGFCHELMAVSGHPA 673 (856)
Q Consensus 595 ~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~-~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~ 673 (856)
+..... +-.....+.|...|...|.+++|..+|...++ +.|.. ..++.|...|.+.|++++|..++++..+..+..
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 998752 34467889999999999999999999999987 66765 677888889999999999999999999999988
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 674 HMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 674 ~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
...+..++..+...++...++..+.+.+.-.+.- ....+-|...|--.|.+.+|+.-+++..+..
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~--AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF--AEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH--HHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 8888888877776666666666666666644322 3456789999999999999999999988753
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.66 E-value=6.2e-12 Score=160.90 Aligned_cols=368 Identities=12% Similarity=0.006 Sum_probs=259.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHH---------
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEP-DRVTYC--------- 434 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p-d~~ty~--------- 434 (856)
.+...+...|++++|...|++..+.. +.+...+..|...|.+.|++++|+..|++..+..-.. ....|.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 34566778899999999999998753 3378889999999999999999999999988753211 111121
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 435 ---TLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQA 511 (856)
Q Consensus 435 ---~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~ 511 (856)
.+...+.+.|++++|+..|+++++.. +.+...+..+...|...|++++|++.|++..+... .+...+..+...|.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 22446778999999999999999873 34677788889999999999999999999987532 24566777777764
Q ss_pred HcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 003028 512 KARNYQSALKLYRDMQNAGFE--------PDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKA 583 (856)
Q Consensus 512 ~~g~~~~A~~ll~~M~~~gi~--------pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~ 583 (856)
.++.++|+.+++.+...... .....+..+...+...|++++|...|++..+... -+...+..+...|.+.
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQA 508 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 56789999888765332100 0112345566778889999999999999998642 3567788899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----------------------------
Q 003028 584 GNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNL----------------------------- 634 (856)
Q Consensus 584 g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~----------------------------- 634 (856)
|++++|...|+++.+.. +.+...+..+...+...++.++|+..++.+...
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 99999999999988642 224444433333344445555554444432110
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC
Q 003028 635 ----------GLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSE 704 (856)
Q Consensus 635 ----------g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~ 704 (856)
....+...+..+...+.+.|+.++|...++...+..+........+...+...++ .+.+...++.+...
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~-~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD-LAAARAQLAKLPAT 666 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcc
Confidence 1223445566677778899999999999999888877655555544433333333 44555555555443
Q ss_pred CCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 705 DRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 705 ~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
.+. +..++..+..+|...|++++|.++|+++....
T Consensus 667 ~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 667 AND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 322 34556778889999999999999999988754
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.65 E-value=4.1e-12 Score=155.59 Aligned_cols=400 Identities=12% Similarity=0.027 Sum_probs=286.5
Q ss_pred HHHHHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003028 329 QANQVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRA 408 (856)
Q Consensus 329 ~~~~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~ 408 (856)
.+..+..-.++.+.|++++..+... -..+...+..+...+.+.|++++|.++|++..+.. +.+...+..+...+...
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 3446666678999999999888641 23455578999999999999999999999988752 34577788888999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003028 409 NYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLF 488 (856)
Q Consensus 409 g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf 488 (856)
|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +-+...+..+..++...+..++|.+.+
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 99999999999998763 44556 8888889999999999999999999873 335666677888888999999999988
Q ss_pred HHHHHcCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCCHH-HHH----HHHHHHHhc
Q 003028 489 CEMVNQGCIPNL------VTYNIMIALQA-----KARNY---QSALKLYRDMQNA-GFEPDKV-TYS----IVMEVLGHC 548 (856)
Q Consensus 489 ~~m~~~g~~pd~------~ty~~Li~~~~-----~~g~~---~~A~~ll~~M~~~-gi~pd~~-ty~----~ll~a~~~~ 548 (856)
+.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...
T Consensus 174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 86654 2331 11222222222 22334 7788888888754 2233321 111 113455677
Q ss_pred CChHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHH
Q 003028 549 GYLDEAEAVFAEMRRKNWV-PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRP---NVPTCNSLLSAFLRVGQLSDA 624 (856)
Q Consensus 549 g~~~~A~~l~~~m~~~g~~-pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~p---d~~t~n~Li~ay~~~g~~e~A 624 (856)
|++++|+..|+.+.+.+.. |+. ....+...|...|++++|..+|+++....-.. ....+..|..++.+.|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 9999999999999886532 332 22335778999999999999999987642111 134567777888999999999
Q ss_pred HHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccH
Q 003028 625 YHLLQGMLNLG-----------LKPSL---QTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNV 690 (856)
Q Consensus 625 ~~l~~~M~~~g-----------~~Pd~---~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~ 690 (856)
..+++++.... -.|+. ..+..+...+...|+.++|..+++.+....+........+...+...++
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~- 408 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW- 408 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-
Confidence 99999998742 12332 2445566678899999999999999988877665555544444333334
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 691 RDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 691 ~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
.+.+...++......+. +..++-.++..+.+.|++++|..+++++.+..
T Consensus 409 ~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 409 PRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 45555555555544433 34456677778999999999999999998863
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.64 E-value=9.1e-12 Score=149.50 Aligned_cols=348 Identities=8% Similarity=-0.034 Sum_probs=210.9
Q ss_pred CCCCCHHHHH---HHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003028 322 NYSMDAYQAN---QVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTY 398 (856)
Q Consensus 322 ~~~~~~~~~~---~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty 398 (856)
...|+...+. ..+..+++++.|++.+....+.. ..+...|..+..+|...|++++|..-|.......- .+....
T Consensus 155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~-~~~~~~ 231 (615)
T TIGR00990 155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDG-FRNEQS 231 (615)
T ss_pred hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CccHHH
Confidence 4456544332 23445689999999999987532 23566888999999999999999998877765321 122222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---------------------------HHHHHHHH------HHcCC
Q 003028 399 NRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVT---------------------------YCTLIDIH------AKAGF 445 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t---------------------------y~~Ll~~~------~k~g~ 445 (856)
..++..+........+...++.-.. ..|.... -..++..+ ...++
T Consensus 232 ~~~~~~~l~~~a~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~ 309 (615)
T TIGR00990 232 AQAVERLLKKFAESKAKEILETKPE--NLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADES 309 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhh
Confidence 2222222111111112211111000 0000000 00001100 12356
Q ss_pred HHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAG-L-SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKL 522 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g-~-~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~l 522 (856)
+++|.+.|++..+.+ . +.....|+.+...+...|++++|...|+...+. .| +...|..+...+...|++++|+..
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 778888888777654 1 223456677777777788888888888877764 23 355677777777888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003028 523 YRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLR 602 (856)
Q Consensus 523 l~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~ 602 (856)
|+++.+.. +.+...|..+...+...|++++|...|+...+.. +.+...+..+...+.+.|++++|...|++..+. .+
T Consensus 388 ~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P 464 (615)
T TIGR00990 388 FDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FP 464 (615)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC
Confidence 88776653 2235667777777778888888888888877653 234566667777777888888888888877754 23
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-H-------HHHHHHHHHHhcCCcchHHHHHHHHHHcCCChH
Q 003028 603 PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL-Q-------TYTLLLSCCTEARSPYDMGFCHELMAVSGHPAH 674 (856)
Q Consensus 603 pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~-~-------ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~ 674 (856)
.+...|+.+...|...|++++|++.|++.++. .|+. . .+...+..+...|++++|..+++......+...
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 45677778888888888888888888887763 2221 0 111111223335777778777777766665544
Q ss_pred HHHHhcC
Q 003028 675 MFLLSMP 681 (856)
Q Consensus 675 ~~~~~l~ 681 (856)
.....+.
T Consensus 543 ~a~~~la 549 (615)
T TIGR00990 543 IAVATMA 549 (615)
T ss_pred HHHHHHH
Confidence 4444433
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.6e-11 Score=130.19 Aligned_cols=325 Identities=18% Similarity=0.272 Sum_probs=206.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVII 472 (856)
Q Consensus 393 pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li 472 (856)
.+..+|.+||.++|+--..+.|.+++++-.+...+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 366778888888888888888888888877766677888888777654322 3367777888777888888888888
Q ss_pred HHHHccCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHc----CC---CC-CHHHHH
Q 003028 473 NCLGKAGHLQA----AHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQS-ALKLYRDMQNA----GF---EP-DKVTYS 539 (856)
Q Consensus 473 ~~y~k~g~~~~----A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~-A~~ll~~M~~~----gi---~p-d~~ty~ 539 (856)
.+..+.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+ |..++.++.+. .+ .| |..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 88888886654 45666777788888888888888887777766543 44444444332 12 22 345566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC----CCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 540 IVMEVLGHCGYLDEAEAVFAEMRRKN----WVPD---EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLL 612 (856)
Q Consensus 540 ~ll~a~~~~g~~~~A~~l~~~m~~~g----~~pd---~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li 612 (856)
..|..|.+..+.+.|.++...+.... +.|+ ..-|..+..+.|+....+.-..+|+.|.-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 77777777788888888777665431 1122 2235566777777777777788888777665667777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ccc--hHHHHHHHHHHcCCChHHHHHhcCCCCCCccc
Q 003028 613 SAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEAR-SPY--DMGFCHELMAVSGHPAHMFLLSMPSPGPDGQN 689 (856)
Q Consensus 613 ~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g-~~~--~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~ 689 (856)
++.--.|.++-.-+++..|+..|..-+.....-++..+++.. .+. +-+++-.. ...+. ..
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~-----------~ak~a------ad 503 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVA-----------FAKCA------AD 503 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHH-----------HHHHH------HH
Confidence 777777777777777777777664444444433444333332 110 00000000 00000 00
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 690 VRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 690 ~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
..+..+.-...+...+. .....+...-.+.+.|+.++|.++|.-+..++
T Consensus 504 ~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 11111111222332222 34456788888999999999999999997654
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.55 E-value=2.8e-11 Score=148.34 Aligned_cols=374 Identities=13% Similarity=0.053 Sum_probs=265.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
+..-..-.+.+....|+.++|++++....... +.+...+..+...+.+.|++++|.++|++..+.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44455567778889999999999999998621 4566679999999999999999999999988763 445777888889
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQS 518 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 518 (856)
++...|++++|+..++++.+. .+.+.. +..+..++...|+.++|...++++.+.... +...+..+..++...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 999999999999999999887 344566 888899999999999999999999986433 56666778888889999999
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHHc-CCCCCHh-hHH----HHHH
Q 003028 519 ALKLYRDMQNAGFEPDK------VTYSIVMEVLG-----HCGYL---DEAEAVFAEMRRK-NWVPDEP-VYG----LLVD 578 (856)
Q Consensus 519 A~~ll~~M~~~gi~pd~------~ty~~ll~a~~-----~~g~~---~~A~~l~~~m~~~-g~~pd~~-~y~----~Li~ 578 (856)
|++.++.... .|+. .....++.... ..+++ ++|...++.+.+. ...|+.. .+. ..+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9998886553 2321 01112222221 12234 7788888888864 2223221 111 1133
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhc
Q 003028 579 LWGKAGNVRKAWEWYEAMLQAGLR-PN-VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKP---SLQTYTLLLSCCTEA 653 (856)
Q Consensus 579 ~~~k~g~~~~A~~l~~~m~~~g~~-pd-~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~P---d~~ty~~Ll~a~~~~ 653 (856)
++...|++++|...|+.+.+.+-+ |+ ...| +...|...|++++|+.+|+++.+..-.. ....+..+..++.+.
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 456779999999999999976522 33 2333 5778999999999999999988643111 134566667778999
Q ss_pred CCcchHHHHHHHHHHcCCC------------hHH---HHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 003028 654 RSPYDMGFCHELMAVSGHP------------AHM---FLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVD 718 (856)
Q Consensus 654 g~~~~a~~l~~~m~~~g~~------------~~~---~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~ 718 (856)
+++++|...++.+....++ .+. ........+... +..+.+...++.+....+. +..++..+..
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~-g~~~eA~~~l~~al~~~P~-n~~l~~~lA~ 401 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS-NDLPQAEMRARELAYNAPG-NQGLRIDYAS 401 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 9999999999988876531 101 111111111112 2345555556655544333 4667889999
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCcc
Q 003028 719 FLHKSGLKEEAGSVWEVAAQKNVYPDAV 746 (856)
Q Consensus 719 ~y~k~G~~eeA~~lf~~m~~~~~~Pd~~ 746 (856)
.|...|++++|++.+++..+.. |+..
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~--Pd~~ 427 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLE--PRNI 427 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhC--CCCh
Confidence 9999999999999999998864 6654
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.55 E-value=1.9e-10 Score=139.18 Aligned_cols=392 Identities=11% Similarity=0.039 Sum_probs=243.3
Q ss_pred hChhHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDE--HTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~--~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 415 (856)
+++..|+..|+.+.+. .|+. ..+ .++..+...|+.++|+.++++.... -.........+...|...|++++|+
T Consensus 48 Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 48 GDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred CCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5666666666666542 2221 122 5556666666666666666666521 0111222222244556666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 003028 416 DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG 495 (856)
Q Consensus 416 ~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g 495 (856)
++|+++.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++++.+..
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 6666666543 333455555566666666666666666666554 3444444344344433444544666666666542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHH------------------------------------------------HHHHHHHHHH
Q 003028 496 CIPNLVTYNIMIALQAKARNYQ------------------------------------------------SALKLYRDMQ 527 (856)
Q Consensus 496 ~~pd~~ty~~Li~~~~~~g~~~------------------------------------------------~A~~ll~~M~ 527 (856)
.. +...+..++.++.+.|-.. .|+.-++.+.
T Consensus 200 P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 PT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 11 3333344444444433322 2333333333
Q ss_pred Hc-CCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 003028 528 NA-GFEPDK-----VTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG- 600 (856)
Q Consensus 528 ~~-gi~pd~-----~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g- 600 (856)
.. +-.|.. ....-.+-++...|++.++.+.++.+...+......+-..+.++|...+++++|..+|+.+....
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 21 222321 12234556778889999999999999988866556688899999999999999999999987532
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------CCCCHHHH-HHHHHHHHhcCCcchHHHH
Q 003028 601 ----LRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLG-------------LKPSLQTY-TLLLSCCTEARSPYDMGFC 662 (856)
Q Consensus 601 ----~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g-------------~~Pd~~ty-~~Ll~a~~~~g~~~~a~~l 662 (856)
..++......|.-+|...+++++|..+++++.+.. ..||-..+ ..+...+...|++.+|+..
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 23345556789999999999999999999998721 12333344 3445568899999999999
Q ss_pred HHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 663 HELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 663 ~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
++.+....+........+...+... +....+..+++.....++. +..+.-.++..+...|++++|..+.+...+..
T Consensus 439 le~l~~~aP~n~~l~~~~A~v~~~R-g~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 439 LEDLSSTAPANQNLRIALASIYLAR-DLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9999888886666555443333333 3445566666666655433 45667788889999999999999998887653
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=2.6e-11 Score=128.76 Aligned_cols=342 Identities=16% Similarity=0.209 Sum_probs=178.8
Q ss_pred HHHHHHHHHhhh---ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 327 AYQANQVLKQLQ---DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIH 403 (856)
Q Consensus 327 ~~~~~~vL~~l~---~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~ 403 (856)
..++..++..+. ..+.|.+++.+-... ..+.+..+||.+|.+-.-..+ .+++.+|....+.||..|+|+++.
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 344444444433 223455555444322 223444455555544332222 445555555555555555555555
Q ss_pred HHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH----CCC----CCCHHHHHH
Q 003028 404 SYGRANYLNE----ALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDV-AMDMYKKMQA----AGL----SPDTFTYSV 470 (856)
Q Consensus 404 ~~~~~g~~~~----A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~-A~~l~~~m~~----~g~----~pd~~ty~~ 470 (856)
+..+.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. ..+ +-|...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 5555554433 33344555555555555555555555555554432 2222222221 111 123334444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 471 IINCLGKAGHLQAAHQLFCEMVNQG----CIPN---LVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVME 543 (856)
Q Consensus 471 Li~~y~k~g~~~~A~~lf~~m~~~g----~~pd---~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~ 543 (856)
.|..|....+.+-|.++..-+.... +.|+ ..-|..+....|+....+..+..|+.|.-.-.-|+..+...++.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 4555555555555555544443210 1111 11234455555666666666666776665555667777777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC-CH-------------HHHHHHHHHHHH-----cCCCCC
Q 003028 544 VLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAG-NV-------------RKAWEWYEAMLQ-----AGLRPN 604 (856)
Q Consensus 544 a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g-~~-------------~~A~~l~~~m~~-----~g~~pd 604 (856)
+....+.++-.-++|.+++..|.......-.-++..+++.. .. +-|..+++.... ......
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~ 521 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP 521 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC
Confidence 77777777777777777777665444444444444444443 11 011122211110 122345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCh
Q 003028 605 VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLG----LKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPA 673 (856)
Q Consensus 605 ~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g----~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~ 673 (856)
....+.++.-+.+.|+.++|.++|..+...+ ..|......-+++.-...+++..|..+++.+...+.+.
T Consensus 522 ~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 522 ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 5566777777888888888888888886533 23444445566666667777777888887776666543
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.45 E-value=2.6e-09 Score=131.90 Aligned_cols=390 Identities=13% Similarity=0.020 Sum_probs=246.3
Q ss_pred hhChhHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTM-VGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRA-NYLNEA 414 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd~~~y~~L-i~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~-g~~~~A 414 (856)
+.+.+.|++.++ .. .....|+..+.... ..+|.+.+++++|+.++.++.+.+. .+..-+..|-..|.+. ++ +++
T Consensus 160 y~q~eqAl~AL~-lr-~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a 235 (987)
T PRK09782 160 LAQLPVARAQLN-DA-TFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRL 235 (987)
T ss_pred hhhHHHHHHHHH-Hh-hhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHH
Confidence 345566666666 32 22333344444444 8888888888889999988888752 3555566777777773 66 777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHH-----------------------
Q 003028 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLS-PDTFTYSV----------------------- 470 (856)
Q Consensus 415 ~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~-pd~~ty~~----------------------- 470 (856)
..+++. .++-|...+..+...|.+.|+.++|.++++++...-.. |...+|--
T Consensus 236 ~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~ 311 (987)
T PRK09782 236 LALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN 311 (987)
T ss_pred HHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH
Confidence 777553 33467888889999999999999999999988654211 21111100
Q ss_pred -------HHHHH---------------------------------------------------------------HccCC
Q 003028 471 -------IINCL---------------------------------------------------------------GKAGH 480 (856)
Q Consensus 471 -------Li~~y---------------------------------------------------------------~k~g~ 480 (856)
++..+ .+.|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~ 391 (987)
T PRK09782 312 RQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQ 391 (987)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccc
Confidence 01111 22344
Q ss_pred HHHHHHHHHHHHHc-C-CCC------------------------------------------------------------
Q 003028 481 LQAAHQLFCEMVNQ-G-CIP------------------------------------------------------------ 498 (856)
Q Consensus 481 ~~~A~~lf~~m~~~-g-~~p------------------------------------------------------------ 498 (856)
.++|.++|+..... + -..
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 44455544443321 0 000
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHH
Q 003028 499 ----NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYG 574 (856)
Q Consensus 499 ----d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~ 574 (856)
+...|..+..++.. ++.++|+..|.+.... .|+......+...+...|++++|...|+.+... .|+...+.
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~ 546 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLL 546 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHH
Confidence 11222222223322 4455566655554433 244433333344445778888888888877553 34444556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003028 575 LLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEAR 654 (856)
Q Consensus 575 ~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g 654 (856)
.+...+.+.|++++|..+|+...+.. +.+...+..+...+...|++++|+..|++.++ +.|+...|..+-.++.+.|
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCC
Confidence 66777788888888888888887653 23333333444445566999999999999987 5678888888888899999
Q ss_pred CcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHH
Q 003028 655 SPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWE 734 (856)
Q Consensus 655 ~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~ 734 (856)
+.++|...++......+........+...+...++. +++..+++......+. +..++..+..+|...|++++|+..|+
T Consensus 624 ~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~-eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 624 NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI-AQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999998887666555554443344444 4444444444333332 45678899999999999999999999
Q ss_pred HHHhCCCCCCcc
Q 003028 735 VAAQKNVYPDAV 746 (856)
Q Consensus 735 ~m~~~~~~Pd~~ 746 (856)
+..+.. |+..
T Consensus 702 ~Al~l~--P~~a 711 (987)
T PRK09782 702 LVIDDI--DNQA 711 (987)
T ss_pred HHHhcC--CCCc
Confidence 998764 5443
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.39 E-value=5.4e-09 Score=121.72 Aligned_cols=469 Identities=13% Similarity=0.129 Sum_probs=305.7
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQ--PNVVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~--pd~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
.++.++..+...-...+ .++...+.|...|.-.|++..++.+...+...... .-...|-.+.++|-..|++++|..
T Consensus 251 s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 45567777766654444 35568899999999999999999999998864311 123457788999999999999999
Q ss_pred HHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHH
Q 003028 417 VFKQMQVVGCEPDR--VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG----HLQAAHQLFCE 490 (856)
Q Consensus 417 lf~~m~~~g~~pd~--~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g----~~~~A~~lf~~ 490 (856)
+|.+..+. .+|. ..+.-|...|.+.|+++.+...|+.+... .+-+..+..+|-..|...+ ..+.|..++..
T Consensus 329 yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 329 YYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 99887754 3444 45556788999999999999999999886 3456677777777787775 56777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--
Q 003028 491 MVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDM----QNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK-- 564 (856)
Q Consensus 491 m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M----~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~-- 564 (856)
..+.- +.|...|-.+...|-...-+.. +.+|... ...+-.+.....|.+.......|++++|...|+.....
T Consensus 406 ~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 406 VLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred HHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 66543 3377788777777766555544 7766544 34455577778899999999999999999999988765
Q ss_pred -CCCCCHh------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHC-C
Q 003028 565 -NWVPDEP------VYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPT-CNSLLSAFLRVGQLSDAYHLLQGMLNL-G 635 (856)
Q Consensus 565 -g~~pd~~------~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t-~n~Li~ay~~~g~~e~A~~l~~~M~~~-g 635 (856)
...+|.. +--.+...+-..++.+.|.++|..+... .|.-+. |--+...-...+...+|...+++.++. .
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~ 561 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS 561 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc
Confidence 1223331 2333455566778999999999999864 354332 333332333457788999999988873 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC---ChHH-------HHHhcCCCCCCc---ccHHHHHHHHHHHHh
Q 003028 636 LKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGH---PAHM-------FLLSMPSPGPDG---QNVRDHVGSFLEMMH 702 (856)
Q Consensus 636 ~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~---~~~~-------~~~~l~~~~~~~---~~~~~~a~~l~~~~~ 702 (856)
-.|+..+|.. ..+.....+.-+..-+..+...-. +... ++..+...-.++ ....+.|..++..+.
T Consensus 562 ~np~arsl~G--~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 562 SNPNARSLLG--NLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred CCcHHHHHHH--HHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 3455544433 234444444444442332222211 1111 111111111111 122344455555444
Q ss_pred cCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CCCcccccCceeeeeccccccchhhHHHHH-HHHHHHHHH
Q 003028 703 SEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNV-YPDAVKEKGMSYWLINLHVMSDGTAVIALS-RTLAWFRKQ 780 (856)
Q Consensus 703 ~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~-~Pd~~t~~~~~~w~~~~~~l~~g~a~~g~~-~~l~~~~~~ 780 (856)
..++ .+.+.-|-++-.++.+|++.+|..+|.+..+... .+| .|. .+..++...|.. .+++.| +.
T Consensus 640 ~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d--------v~l----Nlah~~~e~~qy~~AIqmY-e~ 705 (1018)
T KOG2002|consen 640 RNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED--------VWL----NLAHCYVEQGQYRLAIQMY-EN 705 (1018)
T ss_pred hcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc--------eee----eHHHHHHHHHHHHHHHHHH-HH
Confidence 4433 3667778889999999999999999999987654 121 354 244455555654 456666 44
Q ss_pred HHHcCCCCCceeeeeeccccCCcccchHHHHHHHHHHhhcC-CCCcccCC-CceEE
Q 003028 781 MLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHMFS-FPFFTENG-NSGCF 834 (856)
Q Consensus 781 m~~~g~~Pd~it~i~~l~~~~~~~~~~~l~~a~~~ll~~~~-~pf~~~~~-~~gc~ 834 (856)
..+.-..-++..++..||+.- -..+.+.++.+.++..+. .|+.|... |+|.+
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~--y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAW--YEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 444444667777777777642 234569999999888875 78887743 55544
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.39 E-value=6.2e-09 Score=126.12 Aligned_cols=369 Identities=13% Similarity=0.043 Sum_probs=257.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDGCQPNV--VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~--~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
.-+-...+.|+++.|...|++..+. .|+. ..+ .++..+...|+.++|+.++++..... .........+...|..
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~ 114 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHH
Confidence 3344567999999999999999875 4653 344 88888999999999999999987211 1222233333557888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKL 522 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 522 (856)
.|++++|+++|+++.+.. +-+...+..++..|...++.++|++.++.+... .|+...+-.++..+...++..+|++.
T Consensus 115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 899999999999999874 345777888899999999999999999999876 45666665555555456677679999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-------------------------------------------
Q 003028 523 YRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFA------------------------------------------- 559 (856)
Q Consensus 523 l~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~------------------------------------------- 559 (856)
++++.+.. +-+...+..++.++.+.|-...|.++.+
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 99998864 2234455555555655555444433332
Q ss_pred -----HHHHc-CCCCCH-hh----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003028 560 -----EMRRK-NWVPDE-PV----YGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLL 628 (856)
Q Consensus 560 -----~m~~~-g~~pd~-~~----y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~ 628 (856)
.+... +-.|.. .. ..-.+-++.+.|++.++.+.|+.|...+.+....+-..+.++|...+++++|+.+|
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 22211 111221 11 12334567788999999999999998876655557789999999999999999999
Q ss_pred HHHHHCC-----CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC------------hHHHHHh---cCCCCCCcc
Q 003028 629 QGMLNLG-----LKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHP------------AHMFLLS---MPSPGPDGQ 688 (856)
Q Consensus 629 ~~M~~~g-----~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~------------~~~~~~~---l~~~~~~~~ 688 (856)
+.+.... ..++......|.-++.+.+++++|..+++.+.+..+. ...+... ....+.- .
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~-~ 429 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA-L 429 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH-c
Confidence 9997643 2234444678889999999999999999999874331 1111100 0000001 1
Q ss_pred cHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCc
Q 003028 689 NVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDA 745 (856)
Q Consensus 689 ~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~~Pd~ 745 (856)
+....++..++.+.... +.+..+...+.+.+...|.+.+|.+.++.+... .|+.
T Consensus 430 gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~ 483 (822)
T PRK14574 430 NDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRS 483 (822)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCcc
Confidence 23566666667665443 336778889999999999999999999776655 4543
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.36 E-value=3.3e-09 Score=120.33 Aligned_cols=281 Identities=10% Similarity=0.078 Sum_probs=191.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVTYNRL-IHSYGRANYLNEALDVFKQMQVVGCEPDRVTYC--TLIDIHAKAGFLDVA 449 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~L-i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~--~Ll~~~~k~g~~~~A 449 (856)
.|+++.|++.+....+.. +++..+-.+ .....+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 588888887777665531 223333333 34447788888888888888754 45543332 335677788888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHH
Q 003028 450 MDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNL-------VTYNIMIALQAKARNYQSALKL 522 (856)
Q Consensus 450 ~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~-------~ty~~Li~~~~~~g~~~~A~~l 522 (856)
...++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888887764 346777788888888888888888888888877544222 1333334444444455556666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003028 523 YRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLR 602 (856)
Q Consensus 523 l~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~ 602 (856)
++.+.+. .+.+......+...+...|+.++|..++++..+.. +|... .++.+....++.+++.+..+.+.+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 6655332 23456677778888888888888888888877643 34321 23334445688888888888887652 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 003028 603 PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELM 666 (856)
Q Consensus 603 pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m 666 (856)
-|...+..+...+.+.+++++|.+.|+.+.+ ..|+..+|..+...+.+.|+.+++..+++.-
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566677888888888888888888888886 5688888888888888888887777766543
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.36 E-value=7.8e-09 Score=119.75 Aligned_cols=328 Identities=15% Similarity=0.079 Sum_probs=254.9
Q ss_pred HHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003028 333 VLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLN 412 (856)
Q Consensus 333 vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~ 412 (856)
.+-..++.+.|.+++.++.++.. .....|-+|..+|-..|+.+++...+-..... .+-|...|..+-....+.|.++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHH
Confidence 34445899999999999998654 35668999999999999999999877444332 2347789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCCHHHHHHHH
Q 003028 413 EALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTF----TYSVIINCLGKAGHLQAAHQLF 488 (856)
Q Consensus 413 ~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~----ty~~Li~~y~k~g~~~~A~~lf 488 (856)
.|.-.|.+..+.. +++...+---+..|-+.|+...|..-|.++.....+.|.. +--.+++.|...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999998875 6666677777889999999999999999998874322222 2234567788888889999998
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------------------CCCHHHHHH
Q 003028 489 CEMVNQ-GCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGF---------------------------EPDKVTYSI 540 (856)
Q Consensus 489 ~~m~~~-g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi---------------------------~pd~~ty~~ 540 (856)
+..... +-..+...+++++..|.+...++.|......+..... .++... .-
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IR 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-Hh
Confidence 877652 2334667899999999999999999999988876221 122222 12
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 541 VMEVLGHCGYLDEAEAVFAEMRRKN--WVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRV 618 (856)
Q Consensus 541 ll~a~~~~g~~~~A~~l~~~m~~~g--~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~ 618 (856)
++-++.+....+..+-+.....+.. ..-+...|.-+.++|...|++.+|..+|..+.....--+...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 3344556666666666666666665 44567889999999999999999999999999776666788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHH
Q 003028 619 GQLSDAYHLLQGMLNLGLKPSL-QTYTLLLSCCTEARSPYDMGFCHELMA 667 (856)
Q Consensus 619 g~~e~A~~l~~~M~~~g~~Pd~-~ty~~Ll~a~~~~g~~~~a~~l~~~m~ 667 (856)
|.+++|++.|+..+. ..|+. .....|-..+.+.|+.++|.+.++.+.
T Consensus 463 ~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999997 45654 455556666889999998887776554
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.36 E-value=4.3e-09 Score=119.37 Aligned_cols=288 Identities=12% Similarity=0.043 Sum_probs=224.5
Q ss_pred HHHHhh-hChhHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHh
Q 003028 332 QVLKQL-QDHTVALGFFNWLRRQAGFKHDEHT-YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYN--RLIHSYGR 407 (856)
Q Consensus 332 ~vL~~l-~~~~~Al~~f~~m~~~~g~~pd~~~-y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~--~Li~~~~~ 407 (856)
.++... ++++.|.+.+....+. .+++.. |-....+..+.|+++.|.+.|.++.+. .|+...+. .....+..
T Consensus 91 gl~a~~eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 91 ALLKLAEGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 344433 8999999888766542 122333 333355558999999999999999874 56654433 33678899
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCC
Q 003028 408 ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDT-------FTYSVIINCLGKAGH 480 (856)
Q Consensus 408 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~-------~ty~~Li~~y~k~g~ 480 (856)
.|+++.|.+.++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+
T Consensus 166 ~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 166 RNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999998876 557888999999999999999999999999988654322 234444555555566
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003028 481 LQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAE 560 (856)
Q Consensus 481 ~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~ 560 (856)
.+...++++.+... .+.+......+...+...|+.++|.+++++..+. .||.. ..++.+....++.+++.+..+.
T Consensus 245 ~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 245 SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHH
Confidence 77777777776543 2347788889999999999999999999998874 44542 2234444566999999999999
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 561 MRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 561 m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+.+.. +-|...+..+...+.+.+++++|.+.|+...+. .|+...|..|...+.+.|+.++|.+++++-+.
T Consensus 320 ~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98764 446777889999999999999999999999984 69999999999999999999999999998764
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.34 E-value=9.2e-12 Score=134.42 Aligned_cols=261 Identities=15% Similarity=0.172 Sum_probs=103.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDG-CQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKA 443 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g-~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~ 443 (856)
.+...+.+.|++++|.++++...... .+.|...|..+...+...++++.|.+.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45777778888888888886554332 12345555556666677888888888888887765 2355566667666 688
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 444 GFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG-CIPNLVTYNIMIALQAKARNYQSALKL 522 (856)
Q Consensus 444 g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g-~~pd~~ty~~Li~~~~~~g~~~~A~~l 522 (856)
+++++|.+++++..+. .++...+..++..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888776654 2566777778888888888888888888876542 345677788888888888888888888
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003028 523 YRDMQNAGFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGL 601 (856)
Q Consensus 523 l~~M~~~gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~ 601 (856)
|++..+.. |+ ......++..+...|+.+++.+++....+.. ..|...+..+..+|...|+.++|..+|++.....
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 88887753 43 5567778888888888888888888877653 4455677788888888888888888888887642
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 602 RPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 602 ~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+.|......+..++.+.|+.++|.++.++..+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 44777888888888888888888888776653
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.31 E-value=6.2e-09 Score=118.61 Aligned_cols=286 Identities=9% Similarity=0.002 Sum_probs=115.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVT-YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDR--VTYCTLIDIHAKAGFLDVA 449 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~t-y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~ty~~Ll~~~~k~g~~~~A 449 (856)
.|+++.|++.+....+. .|+... +-.....+.+.|+.+.|.+.|.+..+.. |+. ...-.....+...|+++.|
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 45555555555444432 222221 2222344444455555555555543321 222 1222234444445555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHH---HHHcCCHHHHHHHHHH
Q 003028 450 MDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYN-IMIAL---QAKARNYQSALKLYRD 525 (856)
Q Consensus 450 ~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~-~Li~~---~~~~g~~~~A~~ll~~ 525 (856)
...++.+.+.. +-+..++..+...|...|++++|.+++..+.+.+.. +...+. .-..+ +...+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 55555554442 223444445555555555555555555555544332 111111 11111 1112222222223333
Q ss_pred HHHcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003028 526 MQNAGF---EPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPV-YGLLVDLWGKAGNVRKAWEWYEAMLQAGL 601 (856)
Q Consensus 526 M~~~gi---~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~-y~~Li~~~~k~g~~~~A~~l~~~m~~~g~ 601 (856)
+..... +.+...+..+...+...|+.++|.+++++..+......... .....-.....++.+.+.+.++...+..
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 322211 11344444444555555555555555555544321111000 0111111122344445555554444321
Q ss_pred CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 003028 602 RPNV--PTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHEL 665 (856)
Q Consensus 602 ~pd~--~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~ 665 (856)
+-|. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|..++++
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1122 333444555555555555555555322222345555555555555555555555554443
No 32
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=1.9e-08 Score=113.43 Aligned_cols=285 Identities=12% Similarity=0.101 Sum_probs=214.4
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGC--QPNVVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~--~pd~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
++.+|+..|..+... ..-+......+..+|...+++++|+++|+.+.+..- .-+..+|.+.+.-+-+. -++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 466888888886542 112335666778899999999999999999987421 12677888888654322 2222
Q ss_pred HH-HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 417 VF-KQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSP-DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 417 lf-~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~p-d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
++ +.+.... +-.+.+|.++-++|.-.++.+.|++.|++.++. .| ...+|+.+-+-+....++|.|...|.....
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~- 483 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG- 483 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-
Confidence 22 2222221 456789999999999999999999999999875 34 678888888888999999999999988775
Q ss_pred CCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 003028 495 GCIPNLVTYNI---MIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEP 571 (856)
Q Consensus 495 g~~pd~~ty~~---Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~ 571 (856)
.|...||+ |--.|.+.++++.|+-.|+...+.+. -+.+....+...+-+.|+.|+|++++++....... |+.
T Consensus 484 ---~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 484 ---VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred ---CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 47777766 55778999999999999998887542 24556667777888899999999999998876533 444
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003028 572 VYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS 639 (856)
Q Consensus 572 ~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd 639 (856)
.--.....+...+++++|+..|+++++. ++-+...|-.+...|.+.|+.+.|+.-|--|.+..-++.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 4444556677889999999999999875 345667788888999999999999999988887443333
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.27 E-value=1.6e-08 Score=115.14 Aligned_cols=285 Identities=11% Similarity=-0.000 Sum_probs=213.1
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEH-TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNV--VTYNRLIHSYGRANYLNEA 414 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~-~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~--~ty~~Li~~~~~~g~~~~A 414 (856)
+++..|.+.+....+ ..|+.. .|-....++.+.|+.+.|.+.|.+..+. .|+. ...-.....+...|+++.|
T Consensus 98 g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 98 GDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 799999999987664 345533 3445567788899999999999998765 3443 3444457888999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HccCCHHHHHHHHHH
Q 003028 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYS-VIINCL---GKAGHLQAAHQLFCE 490 (856)
Q Consensus 415 ~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~-~Li~~y---~k~g~~~~A~~lf~~ 490 (856)
.+.++.+.+.. +-+...+..+...+.+.|++++|.+++..+.+.+.. +...+. .-..++ ...+..+.+.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999875 557778999999999999999999999999998754 444342 222222 333333333445555
Q ss_pred HHHcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHH--HHhcCChHHHHHHHHHHHH
Q 003028 491 MVNQGC---IPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVT--YSIVMEV--LGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 491 m~~~g~---~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~t--y~~ll~a--~~~~g~~~~A~~l~~~m~~ 563 (856)
+.+... +.+...+..+...+...|+.++|.+++++..+.. ||... +. ++.. ....++.+.+.+.++...+
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHH
Confidence 554321 1378889999999999999999999999998864 44321 11 2222 3345788889999988876
Q ss_pred cCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 564 KNWVPDE--PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 564 ~g~~pd~--~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 2244 566788999999999999999999544333579999999999999999999999999998654
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.27 E-value=2.8e-11 Score=130.64 Aligned_cols=261 Identities=17% Similarity=0.144 Sum_probs=113.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 003028 400 RLIHSYGRANYLNEALDVFKQMQVVG-CEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKA 478 (856)
Q Consensus 400 ~Li~~~~~~g~~~~A~~lf~~m~~~g-~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~ 478 (856)
.+...+.+.|++++|++++++..... .+.|...|..+...+...++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55778889999999999996554332 2345555666677778899999999999999987543 56677777777 799
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003028 479 GHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG-FEPDKVTYSIVMEVLGHCGYLDEAEAV 557 (856)
Q Consensus 479 g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g-i~pd~~ty~~ll~a~~~~g~~~~A~~l 557 (856)
+++++|.+++....+. .++...+..++..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|+++
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999877654 3566778888999999999999999999987543 345677788888899999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003028 558 FAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLK 637 (856)
Q Consensus 558 ~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~ 637 (856)
++...+.. +-|..+.+.++..+...|+.+++.++++...+.. +.|...|..+..+|...|+.++|+..|++..+. ..
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NP 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-ST
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-cc
Confidence 99999865 2257888999999999999999999999888653 566778999999999999999999999999873 23
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 003028 638 PSLQTYTLLLSCCTEARSPYDMGFCHELMA 667 (856)
Q Consensus 638 Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~ 667 (856)
.|..+...+.+++...|+.++|..+.....
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 367788888889999999999888765543
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.25 E-value=8.8e-08 Score=118.55 Aligned_cols=317 Identities=14% Similarity=0.053 Sum_probs=183.5
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcCC---HHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRD-G-CQPNVVTYNRLIHSYGRANY---LNE 413 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~-g-~~pd~~ty~~Li~~~~~~g~---~~~ 413 (856)
...+|...+..|-++.. -+....-.+--...+.|+.++|.++|...... + -.++....+-|+..|.+.+. ..+
T Consensus 357 ~~~~~~~~~~~~y~~~~--~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 357 NKAEALRLARLLYQQEP--ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred chhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 44455555555554311 13334444445556778888888888877652 1 12244555577777777765 333
Q ss_pred HHHH----------------------HHHHHH-cCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003028 414 ALDV----------------------FKQMQV-VGC-EP--DRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFT 467 (856)
Q Consensus 414 A~~l----------------------f~~m~~-~g~-~p--d~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t 467 (856)
+..+ ++.... .+. ++ +...|..+..++.. ++.++|...|.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 3333 111111 011 22 45555656555554 6666777766666554 245443
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003028 468 YSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD-KVTYSIVMEVLG 546 (856)
Q Consensus 468 y~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~ 546 (856)
...+...+...|++++|...|+.+... .|+...+..+...+.+.|++++|...|++..+.. |+ ...+..+...+.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~ 587 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHH
Confidence 333444445677777777777766543 3344445555666677777777777777776543 22 222223333344
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003028 547 HCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYH 626 (856)
Q Consensus 547 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~ 626 (856)
..|++++|...+++..+.. |+...+..+..++.+.|++++|...|++..... +-+...++.+...+...|++++|+.
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4577777777777776543 456667777777777777777777777776642 3345566666667777777777777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003028 627 LLQGMLNLGLKPS-LQTYTLLLSCCTEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 627 l~~~M~~~g~~Pd-~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~ 669 (856)
.|++.++ ..|+ ...+..+-.++...|++++|...++...+.
T Consensus 665 ~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 665 MLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777766 3443 345555555666777766666665555444
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=1.9e-08 Score=104.36 Aligned_cols=226 Identities=15% Similarity=0.188 Sum_probs=155.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccCCH
Q 003028 408 ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDT------FTYSVIINCLGKAGHL 481 (856)
Q Consensus 408 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~------~ty~~Li~~y~k~g~~ 481 (856)
.++.++|.++|-+|.+.. +.+..+--+|-+.|-+.|..+.|+.+++.+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 456778888888887642 334455566777788888888888888887765 332 2334455667788888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHH
Q 003028 482 QAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDK----VTYSIVMEVLGHCGYLDEAEAV 557 (856)
Q Consensus 482 ~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~----~ty~~ll~a~~~~g~~~~A~~l 557 (856)
|.|+.+|..+.+.+.. -....-.|+..|-...+|++|++.-+++.+.+-++.. ..|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 8888888888765322 3445667788888888888888888877776554432 2344455555556778888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003028 558 FAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLK 637 (856)
Q Consensus 558 ~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~ 637 (856)
++...+.+. -.+..--.+-+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+....
T Consensus 203 l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 888776542 2344445566777888888888888888887643334556778888888888888888888888774333
Q ss_pred CC
Q 003028 638 PS 639 (856)
Q Consensus 638 Pd 639 (856)
++
T Consensus 282 ~~ 283 (389)
T COG2956 282 AD 283 (389)
T ss_pred cc
Confidence 33
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.22 E-value=5.7e-08 Score=112.73 Aligned_cols=340 Identities=14% Similarity=0.106 Sum_probs=252.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 371 GRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAM 450 (856)
Q Consensus 371 ~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~ 450 (856)
.-.|++++|.+++.+.++.. +.+...|-+|...|-+.|+.+++...+-..-... +.|...|..+-....+.|+++.|.
T Consensus 150 farg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 34499999999999999863 4578899999999999999999999876655443 567789999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHH
Q 003028 451 DMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNI----MIALQAKARNYQSALKLYRDM 526 (856)
Q Consensus 451 ~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~----Li~~~~~~g~~~~A~~ll~~M 526 (856)
-.|.+.++.. +++...+---+..|-+.|+...|..-|.+|.....+.|..-+.. ++..+...++-+.|++.+...
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999873 45666666677889999999999999999988644333333333 456677778888899988877
Q ss_pred HHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------------------------CCCCHhhHHHHHH
Q 003028 527 QNA-GFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN---------------------------WVPDEPVYGLLVD 578 (856)
Q Consensus 527 ~~~-gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g---------------------------~~pd~~~y~~Li~ 578 (856)
... +-..+..+++.++..|.+...++.|......+.... ..++..++ -++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 652 223445577888899999999999988887776611 12233331 2233
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 003028 579 LWGKAGNVRKAWEWYEAMLQAGL--RPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSP 656 (856)
Q Consensus 579 ~~~k~g~~~~A~~l~~~m~~~g~--~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~ 656 (856)
++......+....+...+.+..+ .-+...|.-+..+|...|++++|+.+|..+......-+...|.-+-.++...+..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 44455555666666666666553 3356789999999999999999999999999865555677888888888888888
Q ss_pred chHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 003028 657 YDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVA 736 (856)
Q Consensus 657 ~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m 736 (856)
+.|.+.+++.....+ ...|.. -.|-..|-+.|+.++|.+.++.|
T Consensus 466 e~A~e~y~kvl~~~p----------------------------------~~~D~R--i~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAP----------------------------------DNLDAR--ITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHHHHhcCC----------------------------------Cchhhh--hhHHHHHHhcCCHHHHHHHHhcc
Confidence 777777666654432 222333 37778899999999999999988
Q ss_pred HhCCCCCCcccccCceee
Q 003028 737 AQKNVYPDAVKEKGMSYW 754 (856)
Q Consensus 737 ~~~~~~Pd~~t~~~~~~w 754 (856)
. .||.-+-....+|
T Consensus 510 ~----~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 510 I----NPDGRNAEACAWE 523 (895)
T ss_pred c----CCCccchhhcccc
Confidence 6 4554444443333
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=4.6e-08 Score=101.50 Aligned_cols=283 Identities=15% Similarity=0.175 Sum_probs=143.2
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhcCCHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVV------TYNRLIHSYGRANYLN 412 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~------ty~~Li~~~~~~g~~~ 412 (856)
+.++|.+.|-+|.+ +-+-+..+.-+|-+.|.+.|..+.|+++...+.++ ||.. ..-.|..-|...|-++
T Consensus 50 Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 50 QPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred CcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 55667777777764 11223344556667777777777777777777653 4321 2233445566666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHH
Q 003028 413 EALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDT----FTYSVIINCLGKAGHLQAAHQLF 488 (856)
Q Consensus 413 ~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~----~ty~~Li~~y~k~g~~~~A~~lf 488 (856)
.|.++|..+.+.+ ..-......|+..|-+..+|++|+++-+++...+-.+.. ..|.-|...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 7776666665543 333445556666666666666666666666655332211 12233333333445555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003028 489 CEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVP 568 (856)
Q Consensus 489 ~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~p 568 (856)
.+..+...+ .+..--.+-+.+...|++..|.+.|+...+.+..--..+...|..+|.+.|+.++....+..+.+...
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-- 280 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-- 280 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 555543211 22222233345555566666666665555544333333445555555555666665555555554322
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 003028 569 DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR---VGQLSDAYHLLQGML 632 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~---~g~~e~A~~l~~~M~ 632 (856)
....-..+-+......-.+.|..++.+-... +|+...+..+|..-.. .|...+.+.+++.|+
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 2222233333333333334444443333332 3555555555554432 223344444444444
No 39
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.18 E-value=1e-07 Score=111.34 Aligned_cols=397 Identities=11% Similarity=0.056 Sum_probs=224.3
Q ss_pred hChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKH-DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVV--TYNRLIHSYGRANYLNEA 414 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~p-d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~--ty~~Li~~~~~~g~~~~A 414 (856)
+++..+..+...+....-..+ -...|--+..+|-..|+++.|...|-+... ..++.. .+--|...|.+.|+++.+
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEES 361 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHH
Confidence 566666666666654321111 123566777888888888888888755544 344443 334466777888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-
Q 003028 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAG----FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFC- 489 (856)
Q Consensus 415 ~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g----~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~- 489 (856)
...|++..+.. +-+..|..+|-..|+..+ ..+.|..++.+..+.- +.|...|-.+...|-...-+.. +..|.
T Consensus 362 ~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~ 438 (1018)
T KOG2002|consen 362 KFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGN 438 (1018)
T ss_pred HHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHH
Confidence 88888776642 445566666666666554 4566666666666552 4466666666666554433322 43333
Q ss_pred ---HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHhcCChHHHHHH
Q 003028 490 ---EMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNA---GFEPDK------VTYSIVMEVLGHCGYLDEAEAV 557 (856)
Q Consensus 490 ---~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~---gi~pd~------~ty~~ll~a~~~~g~~~~A~~l 557 (856)
.|...+-.+.....|.+...+...|++++|...|+..... ...+|. .+--.+...+-..++.+.|.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 3344454566777777777777777777777777765433 112222 1222233344444566666666
Q ss_pred HHHHHHcCC---------------------------------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC
Q 003028 558 FAEMRRKNW---------------------------------VPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA-GLRP 603 (856)
Q Consensus 558 ~~~m~~~g~---------------------------------~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~-g~~p 603 (856)
|..+.+... ..++..+..+-..|.+...+..|.+-|+..... ...+
T Consensus 519 Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~ 598 (1018)
T KOG2002|consen 519 YKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKT 598 (1018)
T ss_pred HHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCC
Confidence 666555321 112233333333444444444444433333321 1123
Q ss_pred CHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003028 604 NVPTCNSLLSAFL------------RVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 604 d~~t~n~Li~ay~------------~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~ 671 (856)
|+.+.-+|...|. ..+..++|+++|.+.++.. .-|...-+.+--.++..|.+.+|..++....+...
T Consensus 599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 4444334444332 2334567777777776632 22334445555556777777778777777777665
Q ss_pred ChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 672 PAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 672 ~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
.....+..+...+...+++..++..+..-+.......++.+...|..++.++|.+.+|.+.........
T Consensus 678 ~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 678 DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 333333332222333345555555555556666666677788888888888888888888877766553
No 40
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.15 E-value=3.7e-07 Score=97.75 Aligned_cols=283 Identities=13% Similarity=0.115 Sum_probs=133.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM 452 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l 452 (856)
.|++..|+++..+-.+.+- -....|..-..+.-+.|+.+.+-.++.+.-+.--.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 3555555555555444331 122333344444455555555555555554432233444444445555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 453 YKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNL-------VTYNIMIALQAKARNYQSALKLYRD 525 (856)
Q Consensus 453 ~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~-------~ty~~Li~~~~~~g~~~~A~~ll~~ 525 (856)
++++.+.+ +-++........+|.+.|++.....++..|.+.|.--|. .+|+.++.-....+..+.-...|++
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 55555443 224445555555555555555555555555555443322 2444455444444444443334443
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003028 526 MQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNV 605 (856)
Q Consensus 526 M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~ 605 (856)
.... .+-+...-..++.-+..+|+.++|.++..+..+++..+.. ...-.+.+-++.+.-.+..+..... .+-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 3221 1222333344444555555555555555555555444331 1111233444444444444443322 12233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 003028 606 PTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHEL 665 (856)
Q Consensus 606 ~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~ 665 (856)
-.+.+|..-|.+.+.+.+|...|+..++ ..|+..+|..+-.++.+.|+++++.++.++
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 4455555555555555555555554443 345555555555555555555555554443
No 41
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.12 E-value=2.2e-07 Score=99.40 Aligned_cols=290 Identities=13% Similarity=0.060 Sum_probs=233.9
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDV 417 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 417 (856)
|++.+|.+....-.+ .+-.| ...|-.-..+.-..|+.+.+..++.+.-+.--.++...+-+........|+++.|..-
T Consensus 98 G~~~qAEkl~~rnae-~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 98 GDFQQAEKLLRRNAE-HGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred CcHHHHHHHHHHhhh-cCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 799999998877543 33332 3456667788889999999999999998753345667777788889999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHH
Q 003028 418 FKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDT-------FTYSVIINCLGKAGHLQAAHQLFCE 490 (856)
Q Consensus 418 f~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~-------~ty~~Li~~y~k~g~~~~A~~lf~~ 490 (856)
.+++.+.+ +..+........+|.+.|++..+..++..|.+.|.--|. .+|+.+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99998876 667888999999999999999999999999999886554 4677777777777777776777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003028 491 MVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDE 570 (856)
Q Consensus 491 m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 570 (856)
.... .+-+...-..++.-+.+.|+.++|.++..+..+.+..|+.. .+-.+.+.++.+.-.+..+...+.. .-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 6543 23356667778899999999999999999999888777622 2234567788888888887777643 3355
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003028 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKP 638 (856)
Q Consensus 571 ~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~P 638 (856)
..+.+|-..|.+.+.+.+|...|+...+ ..|+..+|+.+..+|.+.|+..+|.+++++.+..-..|
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999998776 47999999999999999999999999999877533333
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=9e-07 Score=95.94 Aligned_cols=389 Identities=14% Similarity=0.115 Sum_probs=226.1
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN-VVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd-~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
++...|..+|+.... +-..+...|--.+.+=.++..+..|..+++..... -|- ...|--.+.+=-..|++..|.+
T Consensus 87 ~e~~RARSv~ERALd--vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 87 KEIQRARSVFERALD--VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHh--cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 344455566655543 11223334555555555555555555555555542 122 2233334433344455555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-C
Q 003028 417 VFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ-G 495 (856)
Q Consensus 417 lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~-g 495 (856)
+|++-.+. .|+...|++.|+.=.+-..++.|..+|+..+- +.|++.+|--....=-++|.+..|..+|+...+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 55554432 45555555555555555555555555555543 2355555555444444555555555555443321 0
Q ss_pred -----------------------------------CCCC--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHcC
Q 003028 496 -----------------------------------CIPN--LVTYNIMIALQAKARNYQSALKL--------YRDMQNAG 530 (856)
Q Consensus 496 -----------------------------------~~pd--~~ty~~Li~~~~~~g~~~~A~~l--------l~~M~~~g 530 (856)
++.+ ...|..+...=-+-|+.....+. |+.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~- 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK- 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-
Confidence 1111 12222222222222332222111 1122221
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------hhHHHH---HHHHHhcCCHHHHHHHHHHHHHcC
Q 003028 531 FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDE-------PVYGLL---VDLWGKAGNVRKAWEWYEAMLQAG 600 (856)
Q Consensus 531 i~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~-------~~y~~L---i~~~~k~g~~~~A~~l~~~m~~~g 600 (856)
-+-|-.+|-..+..-...|+.+...++|+.... +++|-. .+|--+ +-.-....|++.+.++|+...+.
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 123444666667777778999999999999887 444421 112111 11123568899999999998873
Q ss_pred CCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHH
Q 003028 601 LRPNVPTCNSL----LSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMF 676 (856)
Q Consensus 601 ~~pd~~t~n~L----i~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~ 676 (856)
++-...||..+ ..--.++.++..|.+++...+ |..|-..+|...|..=.+.+.++....++++..+.++..-..
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 44445555544 344457889999999998887 789999999999999889999999999999999988854433
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 677 LLSMPSPGPDGQNVRDHVGSFLEMMHSE-DRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 677 ~~~l~~~~~~~~~~~~~a~~l~~~~~~~-~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
+...... ...-+..+.+..+++...+. ..+....+|.++|+.=..+|.++.|..++++++++.
T Consensus 474 W~kyaEl-E~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 474 WSKYAEL-ETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHH-HHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 3221100 00012456777777755443 455567789999999999999999999999998874
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=8.4e-07 Score=96.22 Aligned_cols=321 Identities=12% Similarity=0.059 Sum_probs=225.9
Q ss_pred HHHHHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHH
Q 003028 329 QANQVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTY--NRLIHSYG 406 (856)
Q Consensus 329 ~~~~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty--~~Li~~~~ 406 (856)
..-.+++..+....|...|.......+ . .|.+-+....-.-+.+.+..+...+. .|.... --+..+|-
T Consensus 169 L~Gvv~k~~~~~s~A~~sfv~~v~~~P--~---~W~AWleL~~lit~~e~~~~l~~~l~-----~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 169 LYGVVLKELGLLSLAIDSFVEVVNRYP--W---FWSAWLELSELITDIEILSILVVGLP-----SDMHWMKKFFLKKAYQ 238 (559)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHhcCC--c---chHHHHHHHHhhchHHHHHHHHhcCc-----ccchHHHHHHHHHHHH
Confidence 345666777777888888877764322 1 34444444433444444443332222 111111 12345666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHH-H
Q 003028 407 RANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGL--SPDTFTYSVIINCLGKAGHLQ-A 483 (856)
Q Consensus 407 ~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~--~pd~~ty~~Li~~y~k~g~~~-~ 483 (856)
...+.++++.-.+.....|++-+...-+-...+.-...++++|+.+|+++.+... --|..+|..++-.--....+. -
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 6668888888888888888766655555555556677889999999999988732 126677776664433322221 1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 484 AHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 484 A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
|..++. +- +--..|..++...|.-.++.+.|...|++..+.+.. ....|+.+-.-|....+...|.+-+....+
T Consensus 319 A~~v~~-id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 319 AQNVSN-ID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHH-hc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 222221 11 124556777888888999999999999999876422 355778788889999999999999999988
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003028 564 KNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTY 643 (856)
Q Consensus 564 ~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty 643 (856)
.+ +.|-..|-.|.++|.-.+...-|+-+|++..... +-|...|.+|..+|.+.++.++|++.|......| ..+...|
T Consensus 393 i~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l 469 (559)
T KOG1155|consen 393 IN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSAL 469 (559)
T ss_pred cC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHH
Confidence 65 4588899999999999999999999999988742 4578999999999999999999999999999865 3366888
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHH
Q 003028 644 TLLLSCCTEARSPYDMGFCHELMAV 668 (856)
Q Consensus 644 ~~Ll~a~~~~g~~~~a~~l~~~m~~ 668 (856)
..|.+.+.+.++.++|.+.+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999888776554
No 44
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.08 E-value=2e-05 Score=88.69 Aligned_cols=395 Identities=13% Similarity=0.088 Sum_probs=206.1
Q ss_pred HHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHh
Q 003028 332 QVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQM----VRDGCQPNVVTYNRLIHSYGR 407 (856)
Q Consensus 332 ~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m----~~~g~~pd~~ty~~Li~~~~~ 407 (856)
..|.++.-+..|..++....+ .++.+...|.+-...=-.+|+.+...+++++- ...|+..+...|-.=...|-+
T Consensus 414 lAlarLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 334455667778888888765 45566778877777777888888888877653 445666666666555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-----------------
Q 003028 408 ANYLNEALDVFKQMQVVGCEPD--RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTY----------------- 468 (856)
Q Consensus 408 ~g~~~~A~~lf~~m~~~g~~pd--~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty----------------- 468 (856)
.|.+-.+..+.......|+.-. ..||+.-...|.+.+.++-|..+|...++- ++-+...|
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 5555555555555544443321 234555555555555555555555554443 22233334
Q ss_pred -----------------HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003028 469 -----------------SVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGF 531 (856)
Q Consensus 469 -----------------~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi 531 (856)
-.....+-..|++..|..++....+.... +...|-+-+.....+.++++|..+|.+....
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 33444444455555555555555444222 4445555555555555555555555554432
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 532 EPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSL 611 (856)
Q Consensus 532 ~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~L 611 (856)
.|+...|.--+...--.+..++|.+++++..+. ++.-...|..+-+.+-+.++++.|.+.|..=.+. ++-.+..|-.|
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllL 725 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLL 725 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHH
Confidence 334334433333333345555555555555542 1222334455555555555555555555433322 33334445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHH
Q 003028 612 LSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVR 691 (856)
Q Consensus 612 i~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~ 691 (856)
...=-+.|++-+|..+|++..-.+ .-+...|...+..=.+.|..+.|..++....+..+.....+.........++.
T Consensus 726 akleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r-- 802 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR-- 802 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc--
Confidence 554455555556666665555432 22334555555555566666555555544444433322222111111111111
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 003028 692 DHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNV 741 (856)
Q Consensus 692 ~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~ 741 (856)
-....+.+..-.. |..+.-++..++....+++.|.+.|++....+.
T Consensus 803 --kTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 803 --KTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred --chHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 1122233333322 344555777888888889999999999887653
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.07 E-value=9.2e-08 Score=98.58 Aligned_cols=197 Identities=13% Similarity=0.121 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIH 440 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~ 440 (856)
..+..+...+...|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 345555566666666666666666655432 2234455555556666666666666666555443 23344455555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 441 AKAGFLDVAMDMYKKMQAAGL-SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSA 519 (856)
Q Consensus 441 ~k~g~~~~A~~l~~~m~~~g~-~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A 519 (856)
...|++++|.+.+++...... ......+..+...|...|++++|.+.|++..+... .+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHH
Confidence 555556666555555554311 11223334444445555555555555554443311 1233444444444445555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003028 520 LKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEM 561 (856)
Q Consensus 520 ~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m 561 (856)
...+++.... ...+...+..+...+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5554444433 1222333333334444444444444444433
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.07 E-value=3.5e-08 Score=113.69 Aligned_cols=268 Identities=15% Similarity=0.140 Sum_probs=184.8
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003028 353 QAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVT 432 (856)
Q Consensus 353 ~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t 432 (856)
..|+.|+.+||..+|.-|+..|+++.|- +|.-|.-+..+.+...|+.++.+..+.++.+.+. .|...|
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 5688899999999999999999999888 8888887777778888999999888888877765 678889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 003028 433 YCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVN-QGCIPNLVTYNIMIALQA 511 (856)
Q Consensus 433 y~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~-~g~~pd~~ty~~Li~~~~ 511 (856)
|..|+.+|...||+.. |+...+ -.-.++..+...|--.....++..+.- .+..||..+ .+....
T Consensus 86 yt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv 150 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLV 150 (1088)
T ss_pred HHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHH
Confidence 9999999999998776 222222 112233344455544444445444332 123344433 344445
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 003028 512 KARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWE 591 (856)
Q Consensus 512 ~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~ 591 (856)
-.|.|+.+++++..|......- ++..+++-+.. ...-.+++....+...-.|+..+|.++++.-...|+++.|..
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccc---hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 5667777777776654321110 11112443332 233444555544442225888888998888888899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003028 592 WYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARS 655 (856)
Q Consensus 592 l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~ 655 (856)
++.+|.+.|++.+..-|..|+.+ .+...-+..+++-|.+.|+.|+..|+...+-.|.+.|.
T Consensus 226 ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999988888888877777777 77788888888888888999999888888777776443
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.06 E-value=1e-07 Score=98.20 Aligned_cols=163 Identities=13% Similarity=0.112 Sum_probs=71.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 003028 467 TYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEP-DKVTYSIVMEVL 545 (856)
Q Consensus 467 ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~p-d~~ty~~ll~a~ 545 (856)
.+..+...|...|++++|.+.|++..+... .+...+..+...+...|++++|.+.|++.......+ ....+..+...+
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 333333444444444444444443333211 122333334444444444444444444443321111 122333344444
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 546 GHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAY 625 (856)
Q Consensus 546 ~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~ 625 (856)
...|++++|...+.+..+.. ..+...+..+...+...|++++|..++++..+. .+.+...+..++..+...|+.++|.
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 44555555555555544432 112334445555555555555555555555443 2334444445555555555555555
Q ss_pred HHHHHHH
Q 003028 626 HLLQGML 632 (856)
Q Consensus 626 ~l~~~M~ 632 (856)
.+++.+.
T Consensus 224 ~~~~~~~ 230 (234)
T TIGR02521 224 RYGAQLQ 230 (234)
T ss_pred HHHHHHH
Confidence 5555443
No 48
>PF13041 PPR_2: PPR repeat family
Probab=99.05 E-value=4.3e-10 Score=87.27 Aligned_cols=50 Identities=32% Similarity=0.624 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003028 603 PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTE 652 (856)
Q Consensus 603 pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~ 652 (856)
||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888763
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=6.6e-07 Score=96.99 Aligned_cols=289 Identities=13% Similarity=0.133 Sum_probs=174.2
Q ss_pred HHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCH
Q 003028 334 LKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQ--PNVVTYNRLIHSYGRANYL 411 (856)
Q Consensus 334 L~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~--pd~~ty~~Li~~~~~~g~~ 411 (856)
.+.++..+.++.-.+... ..|+.-+...-+....+.-...+++.|+.+|+++.++..- -|..+|..++..--....+
T Consensus 237 ~~el~q~~e~~~k~e~l~-~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLS-SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHH-hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 334444555555444443 3455555444444445555667777777777777765211 1566666665432221111
Q ss_pred H-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003028 412 N-EALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCE 490 (856)
Q Consensus 412 ~-~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~ 490 (856)
. .|..++ .+. +--+.|+..+.+-|.-.++.++|...|+..++.+ +-....|+.+-+-|........|..-+..
T Consensus 316 s~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 316 SYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 1 111111 111 2234566666677777777777777777777653 23456677777777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003028 491 MVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDE 570 (856)
Q Consensus 491 m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 570 (856)
.++-. +.|-..|-.|-.+|.-.+.+.=|+-.|++..... +-|...|.+|-++|.+.+++++|.+.|......+ ..+.
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~ 466 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG 466 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch
Confidence 77653 2366777777777777777777777777776642 2346677777777777777777777777777655 2245
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQA----GL-RP-NVPTCNSLLSAFLRVGQLSDAYHLLQGML 632 (856)
Q Consensus 571 ~~y~~Li~~~~k~g~~~~A~~l~~~m~~~----g~-~p-d~~t~n~Li~ay~~~g~~e~A~~l~~~M~ 632 (856)
..+..|.+.|-+.++.++|...|+.-.+. |. .+ .....--|..-+.+.+++++|........
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 66777777777777777777777665542 21 22 12222335555667777777766554444
No 50
>PF13041 PPR_2: PPR repeat family
Probab=99.04 E-value=4.9e-10 Score=86.96 Aligned_cols=49 Identities=47% Similarity=0.728 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 393 pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+.||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444555555555555555555555555555555555555555554443
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=7.1e-08 Score=108.94 Aligned_cols=280 Identities=14% Similarity=0.116 Sum_probs=214.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003028 375 QFGAINKLLDQMVRDGCQPNV-VTYNRLIHSYGRANYLNEALDVFKQMQVVG--CEPDRVTYCTLIDIHAKAGFLDVAMD 451 (856)
Q Consensus 375 ~~~~A~~lf~~m~~~g~~pd~-~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g--~~pd~~ty~~Ll~~~~k~g~~~~A~~ 451 (856)
+..+|..+|..++.. .+|. .....+..+|...+++++|.++|+.+.+.. ..-+...|.+.|.-+-+. -++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 357889999887664 3444 444567799999999999999999998752 234677888887655332 2222
Q ss_pred HH-HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003028 452 MY-KKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNA 529 (856)
Q Consensus 452 l~-~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 529 (856)
++ ++++.. -+-.+.+|.++-++|.-.++.+.|.+.|++..+. .| ...+|+.+-.-+.....+|.|+..|+....
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~- 483 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG- 483 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-
Confidence 22 333333 3446899999999999999999999999999875 34 677888888889999999999999998764
Q ss_pred CCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003028 530 GFEPDKVTY---SIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVP 606 (856)
Q Consensus 530 gi~pd~~ty---~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ 606 (856)
.|...| .-+.-.|.+.++++.|+-.|+...+.+. -+.+....+...+-+.|+.|+|+++|++..... +.|+-
T Consensus 484 ---~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l 558 (638)
T KOG1126|consen 484 ---VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPL 558 (638)
T ss_pred ---CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCch
Confidence 344444 4566678999999999999999987653 366777788888999999999999999998653 44666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003028 607 TCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQ-TYTLLLSCCTEARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 607 t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~-ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~ 671 (856)
.--..+..+...+++++|+..|+++++ +.|+.. .|..+-..|.+.|..+.|..-+-.+....+
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 666677888899999999999999998 678875 455555679999988777665555544433
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.01 E-value=2.8e-07 Score=109.18 Aligned_cols=149 Identities=9% Similarity=-0.078 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRD 525 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 525 (856)
+++|...+++..+.. +-+..++..+...+...|++++|...|++..+... .+...|..+...|...|++++|+..+++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344444444444432 12334444444444444444444444444444321 1233344444444444444444444444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 526 MQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 526 M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
..+..... ...+..++..+...|++++|...++++.+....-+...+..+..+|...|++++|...++++.
T Consensus 398 Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 398 CLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 44432111 111112222233344445555554444432211122233444444445555555555554443
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=2.1e-07 Score=99.78 Aligned_cols=289 Identities=13% Similarity=0.137 Sum_probs=205.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 368 GILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLI-HSYGR-ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF 445 (856)
Q Consensus 368 ~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li-~~~~~-~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~ 445 (856)
.-|.+.|+++.|.+++.-+.+..-..-...-|.|- -.|.+ ..++..|..+-+...... .-+......--+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 44678899999999888776542221111222222 22233 346777777766654322 2222222222233345689
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRD 525 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 525 (856)
+++|.+.|.+.+...-.-....||+= -.+-+.|++++|+..|-.+..- +.-+....-.+...|-...+..+|++++.+
T Consensus 506 ~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 99999999999876443333444433 3467789999999999877532 122667777788899999999999999977
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003028 526 MQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNV 605 (856)
Q Consensus 526 M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~ 605 (856)
.... ++-|....+-|...|-+.|+-.+|.+.+-+--+ -++-+..+...|...|....-+++|..+|++..- +.|+.
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 6543 455677888999999999999999998766554 3456788999999999999999999999998765 68999
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 003028 606 PTCNSLLSAF-LRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHEL 665 (856)
Q Consensus 606 ~t~n~Li~ay-~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~ 665 (856)
.-|-.||..| .+.|++.+|+++++.... .+.-|...+..|+..|...|. .++.+.-++
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 9999988655 578999999999999876 466778888888899988886 344444333
No 54
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.99 E-value=2e-05 Score=88.81 Aligned_cols=363 Identities=11% Similarity=0.053 Sum_probs=257.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHH
Q 003028 367 VGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQ----MQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 367 i~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~----m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
.-+|.+..-++.|..+++...+. ++-+...|.+-...=-.+|+.+...+++++ +...|+..+...|..=...|-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 33455556677788888877764 566777777666666677777777777654 3456777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLSP--DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSAL 520 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~p--d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 520 (856)
.|..--+..+....+..|+.- -..||+.-...|.+.+.++-|..+|....+. ++.+...|...+..--..|..++..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 777777777777777766542 2457777778888888888888888887764 2336667777776666788888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003028 521 KLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG 600 (856)
Q Consensus 521 ~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g 600 (856)
.+|++.... ++-....|.....-+-..|+...|..++....+.... +...+-+-+........++.|..+|.+...
T Consensus 571 Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~-- 646 (913)
T KOG0495|consen 571 ALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS-- 646 (913)
T ss_pred HHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--
Confidence 888888765 2333445655666677789999999999998886533 778888888888899999999999988876
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHh
Q 003028 601 LRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQT-YTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLS 679 (856)
Q Consensus 601 ~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~t-y~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~ 679 (856)
..|+...|..-+..-.-.++.++|++++++.++ ..|+..- |..+-+.+.+.++.+.+...+..-.+..+...-.+..
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 458888888888888888999999999988887 4677644 4444445777787777777665555544433222222
Q ss_pred cCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 003028 680 MPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQK 739 (856)
Q Consensus 680 l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~ 739 (856)
+... ....+..-.+..+++.-...++. +..+|-..|.+=.+.|..+.|..+.-+.++.
T Consensus 725 Lakl-eEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 725 LAKL-EEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHH-HHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2111 11111234455566655544443 5678889999999999999999888887765
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=98.98 E-value=5e-07 Score=106.98 Aligned_cols=266 Identities=15% Similarity=0.073 Sum_probs=180.7
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHH
Q 003028 358 HDEHTYTTMVGILGR-----ARQFGAINKLLDQMVRDGCQPN-VVTYNRLIHSYGRA---------NYLNEALDVFKQMQ 422 (856)
Q Consensus 358 pd~~~y~~Li~~~~k-----~g~~~~A~~lf~~m~~~g~~pd-~~ty~~Li~~~~~~---------g~~~~A~~lf~~m~ 422 (856)
.+...|...+.+... .+.+++|..+|++..+. .|+ ...|..+..+|... +++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 345566666666432 23467899999988874 454 45666665555422 34789999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 003028 423 VVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVT 502 (856)
Q Consensus 423 ~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~t 502 (856)
+.. +-+...+..+..++...|++++|...|++..+.. +.+...+..+...|...|++++|...|++..+.... +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 765 4567788888888889999999999999998874 335677888888899999999999999998876432 2233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 003028 503 YNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGK 582 (856)
Q Consensus 503 y~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k 582 (856)
+..++..+...|++++|+..++++.....+-+...+..+..++...|+.++|...+..+.... ..+....+.+...|+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 344455567788999999999888765322234456667777888999999999998876542 2234445566666777
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 583 AGNVRKAWEWYEAMLQA-GLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNL 634 (856)
Q Consensus 583 ~g~~~~A~~l~~~m~~~-g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~ 634 (856)
.| +.|...++.+.+. ...+....+ +-..|.-.|+.+.+..+ +++.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 77 4777777776642 112222223 33344455666665555 666654
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=4e-06 Score=91.57 Aligned_cols=224 Identities=10% Similarity=0.029 Sum_probs=168.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 003028 510 QAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKA 589 (856)
Q Consensus 510 ~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A 589 (856)
+.-.|+.-.|.+-|+...+....++. .|.-+..+|....+.++....|......+. -+..+|..-.+++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHH
Confidence 34467888899999988887554443 377778889999999999999999887653 3677888888888889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003028 590 WEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 590 ~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~ 669 (856)
..=|++..... +-++..|-.+..+.-+.+++++++..|++.++. +.--...|+.....+...++++.|.+.++...+.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999988742 335667777777778899999999999999874 4444578888889999999999999999988777
Q ss_pred CCChHHHHHhc------CCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 003028 670 GHPAHMFLLSM------PSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQ 738 (856)
Q Consensus 670 g~~~~~~~~~l------~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~ 738 (856)
-+..|..+... ......-.+....+..+++...+.++..+ ..|..|..+-...|++++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce-~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE-QAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 65532221110 00011112345566666666666665543 4688999999999999999999998653
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1e-07 Score=102.03 Aligned_cols=187 Identities=12% Similarity=0.063 Sum_probs=127.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003028 547 HCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYH 626 (856)
Q Consensus 547 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~ 626 (856)
..|++++|.+.+++.....-.-....||.=+ .+-+.|++++|++.|-++..- +.-+....-.+...|-...+...|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 4588999999999988754433344444433 356789999999999887643 24577788888999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCC
Q 003028 627 LLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDR 706 (856)
Q Consensus 627 l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~ 706 (856)
++.+... -+.-|...+.-|-..|-+.|+-..|.+++-.--+.-+..-..+ ..+..|.-..++.+.+..+++.... +
T Consensus 580 ~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~i-ewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 580 LLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETI-EWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHH-HHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 9976654 2444567778888889899987777766544333322211111 1111222233566777777765543 3
Q ss_pred CchHHHHHHHHH-HHHhCCChhHHHHHHHHHHhC
Q 003028 707 ESKRGLVDAVVD-FLHKSGLKEEAGSVWEVAAQK 739 (856)
Q Consensus 707 ~~~~~~~~aLi~-~y~k~G~~eeA~~lf~~m~~~ 739 (856)
.|+..-|..+|. ++.+.|++++|.++++....+
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 466666777765 455689999999999998876
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.93 E-value=1.4e-06 Score=100.43 Aligned_cols=291 Identities=16% Similarity=0.183 Sum_probs=208.6
Q ss_pred HHHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhc-
Q 003028 331 NQVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYN-RLIHSYGRA- 408 (856)
Q Consensus 331 ~~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~-~Li~~~~~~- 408 (856)
+.++...++++.|++.++.-.. .+......+......+.+.|+.++|..+|..+.+++ |+...|- .|..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 4777888999999999987543 233345567778899999999999999999999875 5555554 444544222
Q ss_pred ----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003028 409 ----NYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF-LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA 483 (856)
Q Consensus 409 ----g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~-~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~ 483 (856)
...+...++|+++...- |.......+.-.+..... -..+...+..+...|++ .+|+.|-..|......+-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 35788889999887653 333332222222222112 33455667777788875 567777777877777777
Q ss_pred HHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003028 484 AHQLFCEMVNQ----G----------CIPNLV--TYNIMIALQAKARNYQSALKLYRDMQNAGFEPD-KVTYSIVMEVLG 546 (856)
Q Consensus 484 A~~lf~~m~~~----g----------~~pd~~--ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~ 546 (856)
..+++..+... + -.|... ++..+...|-..|++++|++++++..+. .|+ +..|..-...+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 77777776533 1 123443 4456678888999999999999998875 466 557888888899
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHHHc
Q 003028 547 HCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVP------TC--NSLLSAFLRV 618 (856)
Q Consensus 547 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~------t~--n~Li~ay~~~ 618 (856)
+.|++.+|.+.++..+..... |..+-+-.+..+.++|++++|.+++......+..|-.. .| .....+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986643 77777788888999999999999999887655433221 22 4457888999
Q ss_pred CCHHHHHHHHHHHHH
Q 003028 619 GQLSDAYHLLQGMLN 633 (856)
Q Consensus 619 g~~e~A~~l~~~M~~ 633 (856)
|++..|++.|..+.+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999888776654
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=1.4e-06 Score=90.52 Aligned_cols=229 Identities=14% Similarity=0.054 Sum_probs=131.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 003028 399 NRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKA 478 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~ 478 (856)
+.+-++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-.+|.+..+.+.|+.+|.+-.+. ++-|+....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 44556666666666666666655543 455556666666666666666666666665554 333333334455556666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003028 479 GHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVF 558 (856)
Q Consensus 479 g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~ 558 (856)
++.++|.++++...+... .++.....+...|.-.++.+-|+.+|+++.+.|+. +...|+.+--+|.-.+++|.++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 666666666666655422 24445555555666666666666666666666654 3445555555566666666666666
Q ss_pred HHHHHcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 559 AEMRRKNWVPD--EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 559 ~~m~~~g~~pd--~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.+....--.|+ ..+|-.|-......||+..|.+.|+-..... .-+...+|.|.---.+.|++++|..+++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66554322222 2345555555556666666666666655432 23455666666666666666666666666554
No 60
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=0.00013 Score=79.60 Aligned_cols=326 Identities=11% Similarity=0.122 Sum_probs=178.0
Q ss_pred hhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003028 336 QLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415 (856)
Q Consensus 336 ~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 415 (856)
.+++...|.++|+.-. ...|+...|++.|+.=.+-..++.|..+++...- +.|++.+|-.....=.++|.+..|.
T Consensus 153 ~LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HhcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 4567777888775433 2568888888888888888888888888888775 3588888877777777888888888
Q ss_pred HHHHHHHHc-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-------------------------------
Q 003028 416 DVFKQMQVV-GC-EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLS------------------------------- 462 (856)
Q Consensus 416 ~lf~~m~~~-g~-~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~------------------------------- 462 (856)
.+|+...+. |- .-+...+++....=.+...++.|.-+|.-.+.. ++
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 877766542 10 011112222222222334455555555444332 11
Q ss_pred -------------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH--------HHHHHcCCHHHH
Q 003028 463 -------------PDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNL--VTYNIMI--------ALQAKARNYQSA 519 (856)
Q Consensus 463 -------------pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~--~ty~~Li--------~~~~~~g~~~~A 519 (856)
-|-.+|--.+..--..|+.+...++|+..+.. ++|-. ..|.-.| -.=....+.+.+
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 12223333344444445555555555555432 22210 1111111 111134455555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003028 520 LKLYRDMQNAGFEPDKVTYSIVMEVL----GHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEA 595 (856)
Q Consensus 520 ~~ll~~M~~~gi~pd~~ty~~ll~a~----~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~ 595 (856)
.++|+...+. ++-..+||.-+=-.| .+..++..|.+++.... |..|-..+|...|..-.+.+++|....++++
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555555542 222334444322222 24455666666666554 4456666666666666666777777777776
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC
Q 003028 596 MLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLG-LKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHP 672 (856)
Q Consensus 596 m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g-~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~ 672 (856)
.++-+ +-|..+|.....-=...|+.+.|..+|.-.+.+. +......+...|+-=...|..+.+..+++.+.+....
T Consensus 463 fle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 463 FLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 66643 3455666666666666677777777776666532 1112233334444444556666666666666655443
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.85 E-value=9e-08 Score=110.38 Aligned_cols=256 Identities=18% Similarity=0.181 Sum_probs=160.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003028 382 LLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGL 461 (856)
Q Consensus 382 lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~ 461 (856)
++-.+...|+.|+-+||..||.-||..|+.+.|- +|.-|+-..++-+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455666777787788888888888888777777 7777776666667777777777777777766655
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHH
Q 003028 462 SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQN-AGFEPDKVTYSI 540 (856)
Q Consensus 462 ~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~-~gi~pd~~ty~~ 540 (856)
.|-..||..|+.+|...||+.. |+...+ -.-.++..+...|.-.....++..+.- -+.-||..+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 4667777788888888777665 222222 111223334444444444444443321 233444432
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 541 VMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGK-AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVG 619 (856)
Q Consensus 541 ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k-~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g 619 (856)
++.-....|-++.+.+++..+......-.... +++-+.. ...+++-..+...+.+ .|+..+|.+++.+-...|
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHH---HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcC
Confidence 23333444556666666554433221111111 1222222 2233444444333333 589999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCh
Q 003028 620 QLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPA 673 (856)
Q Consensus 620 ~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~ 673 (856)
+.+.|..++.+|.+.|+..+..-|..||-+ .++...++.++..|.+.|..+
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p 269 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQP 269 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCC
Confidence 999999999999999999999888888766 666677788888888888754
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.85 E-value=1.6e-06 Score=98.86 Aligned_cols=244 Identities=15% Similarity=0.138 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-
Q 003028 465 TFTYSVIINCLGKAGHLQAAHQLFCEMVNQ-----GC-IPNLVT-YNIMIALQAKARNYQSALKLYRDMQNA-----GF- 531 (856)
Q Consensus 465 ~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~-----g~-~pd~~t-y~~Li~~~~~~g~~~~A~~ll~~M~~~-----gi- 531 (856)
..+...|..+|...|+++.|..+++.-.+. |. .|.+.+ .+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555777888888888888888765543 21 123322 334667888899999999999888642 21
Q ss_pred CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C
Q 003028 532 EPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRK-----NW-VPDE-PVYGLLVDLWGKAGNVRKAWEWYEAMLQA---G 600 (856)
Q Consensus 532 ~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~-----g~-~pd~-~~y~~Li~~~~k~g~~~~A~~l~~~m~~~---g 600 (856)
.|. ..+++.|..+|.+.|++++|+..++...+. +. .+.+ ..++.+...|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 222 446777788899999999988888876532 11 1222 23566777788899999999998876542 1
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003028 601 LRPN----VPTCNSLLSAFLRVGQLSDAYHLLQGMLNL----GL--KPS-LQTYTLLLSCCTEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 601 ~~pd----~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~----g~--~Pd-~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~ 669 (856)
..++ ..+++.|...|...|++++|.++|++.+.. +- .+. ...++.+-..|.+.+...++.+++.+-.
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~-- 436 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK-- 436 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH--
Confidence 2222 467999999999999999999999998752 11 222 3566777778888888877777654332
Q ss_pred CCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 003028 670 GHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAA 737 (856)
Q Consensus 670 g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~ 737 (856)
.+..... .+......+|..|...|.+.|++++|.++.+...
T Consensus 437 --------------------------~i~~~~g-~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 --------------------------DIMKLCG-PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred --------------------------HHHHHhC-CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2221111 1222345678999999999999999999988765
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=6.3e-07 Score=93.03 Aligned_cols=230 Identities=14% Similarity=0.050 Sum_probs=183.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
-+.|..+|.+.|.+.+|++.|..-.+. .|-+.||-.|-+.|.+-++++.|+.+|.+-.+. ++-|+....-+...+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 356788889999999999998887765 577888888889999999999999999887764 23444444556777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKL 522 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 522 (856)
.++.++|.++|+...+.. +-++.....+...|.-.++.+.|++.+.++.+-|+. +...|+.+--+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 899999999999888763 446667777777888888999999999999988876 788888888888888999999988
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 523 YRDMQNAGFEPD--KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ 598 (856)
Q Consensus 523 l~~M~~~gi~pd--~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~ 598 (856)
|.+....--.|+ ...|..+-......|++..|.+.|......+. -+...+|.|.-.-.+.|+++.|..+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 888776544454 23566677777788999999999988887553 3667888888888899999999999988775
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.76 E-value=1.1e-05 Score=93.24 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003028 574 GLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN-VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTE 652 (856)
Q Consensus 574 ~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd-~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~ 652 (856)
..+...|-..|++++|++++++.+++ .|+ +..|..-...|-+.|++++|.+.++.....+ .-|...=+-....+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHH
Confidence 44445555556666666666555553 233 4455555555555666666665555555432 1122223333334445
Q ss_pred cCCcchHHHHHHHHHHc
Q 003028 653 ARSPYDMGFCHELMAVS 669 (856)
Q Consensus 653 ~g~~~~a~~l~~~m~~~ 669 (856)
.|+.++|..++....+.
T Consensus 275 a~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTRE 291 (517)
T ss_pred CCCHHHHHHHHHhhcCC
Confidence 55555555555444443
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.75 E-value=3.8e-06 Score=95.94 Aligned_cols=236 Identities=18% Similarity=0.186 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC--C
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVV-----GC-EPDRVT-YCTLIDIHAKAGFLDVAMDMYKKMQAA-----GL--S 462 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~-----g~-~pd~~t-y~~Ll~~~~k~g~~~~A~~l~~~m~~~-----g~--~ 462 (856)
+...|...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++... |- +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444667777777777777777665442 10 122222 223445566666666666666666432 11 1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-----C-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC
Q 003028 463 PDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ-----G-CIPNLV-TYNIMIALQAKARNYQSALKLYRDMQNA---GFE 532 (856)
Q Consensus 463 pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~-----g-~~pd~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~---gi~ 532 (856)
.-..+++.|...|++.|++++|...++...+- | ..|.+. .++.+...|...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 11234445555666666666666655544321 1 111221 2334455555566666666665543221 111
Q ss_pred CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 003028 533 PD----KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN-------WVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ--- 598 (856)
Q Consensus 533 pd----~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g-------~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~--- 598 (856)
++ ..+++.|...|...|++++|+++|+.+.... ..-....++.|...|.+.+++.+|.++|.+-..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 11 2355555555556666666666655554321 011123344555555555555555555554321
Q ss_pred -cCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 599 -AGL-RP-NVPTCNSLLSAFLRVGQLSDAYHLLQGML 632 (856)
Q Consensus 599 -~g~-~p-d~~t~n~Li~ay~~~g~~e~A~~l~~~M~ 632 (856)
.|. .| ...+|..|...|...|++++|+++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 111 11 12345555555555555555555555443
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.69 E-value=0.00025 Score=80.22 Aligned_cols=402 Identities=10% Similarity=0.099 Sum_probs=239.2
Q ss_pred HHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003028 332 QVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYL 411 (856)
Q Consensus 332 ~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~ 411 (856)
.++-..++.......|+...+...+.--...|...|......+-.+.+..++....+ .++..-+-.|..+++.+++
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccch
Confidence 333334556667777777766555544455788888888888888888888888876 3555577888888899999
Q ss_pred HHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCC
Q 003028 412 NEALDVFKQMQVV------GCEPDRVTYCTLIDIHAKAGFLDV---AMDMYKKMQAAGLSPD--TFTYSVIINCLGKAGH 480 (856)
Q Consensus 412 ~~A~~lf~~m~~~------g~~pd~~ty~~Ll~~~~k~g~~~~---A~~l~~~m~~~g~~pd--~~ty~~Li~~y~k~g~ 480 (856)
++|.+.+...... ..+.+-..|.-+.+...+.-+.-. +..++..++.. -+| ...|+.|.+-|.+.|+
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhh
Confidence 9998888776421 125556667777666666544332 22333333322 234 4678999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHcCC-------
Q 003028 481 LQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKAR----------------------NYQSALKLYRDMQNAGF------- 531 (856)
Q Consensus 481 ~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g----------------------~~~~A~~ll~~M~~~gi------- 531 (856)
++.|..+|++-... ..++.-|+.+.++|+.-. +++-.+.-|+.+.+.+.
T Consensus 264 ~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 264 FEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 99999999987764 234444555555554311 11222333333332210
Q ss_pred ----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003028 532 ----EPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPD------EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGL 601 (856)
Q Consensus 532 ----~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd------~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~ 601 (856)
.-++.+|..-.. +..|+..+-...+.+..+. +.|- ...|..+.+.|-..|+++.|..+|++......
T Consensus 342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 112223322222 2346677777888887763 2332 24577788889999999999999999876432
Q ss_pred CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----------CC-------CHHHHHHHHHHHHhcCCcchHHH
Q 003028 602 RPN---VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGL----------KP-------SLQTYTLLLSCCTEARSPYDMGF 661 (856)
Q Consensus 602 ~pd---~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~----------~P-------d~~ty~~Ll~a~~~~g~~~~a~~ 661 (856)
+.- ..+|-.-...=.++.+++.|+++++......- .| +...|...++.-...|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 211 23455555555678889999998887653111 11 22344455555556677777888
Q ss_pred HHHHHHHcCCC-hHHHHHhcCCCCCCcccHHHHH-HHHHHHHhcCCCCchHHHHHHHHHHHHhC-C--ChhHHHHHHHHH
Q 003028 662 CHELMAVSGHP-AHMFLLSMPSPGPDGQNVRDHV-GSFLEMMHSEDRESKRGLVDAVVDFLHKS-G--LKEEAGSVWEVA 736 (856)
Q Consensus 662 l~~~m~~~g~~-~~~~~~~l~~~~~~~~~~~~~a-~~l~~~~~~~~~~~~~~~~~aLi~~y~k~-G--~~eeA~~lf~~m 736 (856)
+++.+....+. +...++.... .+.....+++ ..+.+.+.....+.--.+|+.++.-+.+. | .++.|..+|++.
T Consensus 499 vYdriidLriaTPqii~NyAmf--LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIIINYAMF--LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHH--HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 88888776653 2222221100 0111122222 22222333233333344677666555542 2 478999999999
Q ss_pred HhCCCCCCccc
Q 003028 737 AQKNVYPDAVK 747 (856)
Q Consensus 737 ~~~~~~Pd~~t 747 (856)
.+ ++.|+...
T Consensus 577 L~-~Cpp~~aK 586 (835)
T KOG2047|consen 577 LD-GCPPEHAK 586 (835)
T ss_pred Hh-cCCHHHHH
Confidence 88 77675543
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2.4e-05 Score=87.17 Aligned_cols=288 Identities=14% Similarity=0.083 Sum_probs=217.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 355 GFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYC 434 (856)
Q Consensus 355 g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~ 434 (856)
+...++.....-.+-+-..+++.+..++++.+.+. .+++...+..-|.++...|+..+-..+=.+|.+.- +....+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence 34456666667777788889999999999988875 35566777777888888998888888888887753 66778898
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHH
Q 003028 435 TLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ--GCIPNLVTYNIMIALQAK 512 (856)
Q Consensus 435 ~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~--g~~pd~~ty~~Li~~~~~ 512 (856)
++..-|.-.|...+|.+.|.+.....- .=...|-...+.|+-.|..|.|...+...-+. |.. -. +--+---|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP--~LYlgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LP--SLYLGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-ch--HHHHHHHHHH
Confidence 888888888999999999988765421 12467888888999999999988887765442 211 11 1223345677
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C--CCCCHhhHHHHHHHHHhcCCH
Q 003028 513 ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK----N--WVPDEPVYGLLVDLWGKAGNV 586 (856)
Q Consensus 513 ~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~----g--~~pd~~~y~~Li~~~~k~g~~ 586 (856)
.+.+..|.++|.+..... +-|...++-+--.....+.+.+|..+|+..... + ......+++.|..+|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 888999999998876532 334556666655566778899999998877631 1 112456789999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003028 587 RKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTE 652 (856)
Q Consensus 587 ~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~ 652 (856)
++|...|+..... .+.|..++.++.-.|...|+++.|++.|.+.+. +.||..+...+|..+.+
T Consensus 472 ~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 472 EEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 9999999998865 367889999999999999999999999999885 88999888888876543
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=6e-05 Score=82.65 Aligned_cols=353 Identities=11% Similarity=0.005 Sum_probs=210.1
Q ss_pred hhChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHD-EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNV-VTYNRLIHSYGRANYLNEA 414 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd-~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~-~ty~~Li~~~~~~g~~~~A 414 (856)
-+++++|.+.+.|... +.|| +.-|....-+|...|++++..+.-....+. .|+- ..+..-..++-..|++++|
T Consensus 128 ~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred cccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHH
Confidence 3688999999999986 5677 778999999999999999988877776663 3432 2333333444445555544
Q ss_pred HH----------------------HHHH---------HHHcC--CCCCHHHHHHHHHHHHHc------------------
Q 003028 415 LD----------------------VFKQ---------MQVVG--CEPDRVTYCTLIDIHAKA------------------ 443 (856)
Q Consensus 415 ~~----------------------lf~~---------m~~~g--~~pd~~ty~~Ll~~~~k~------------------ 443 (856)
+. ++.+ |.+.+ +-|+.....+....+...
T Consensus 203 l~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~ 282 (606)
T KOG0547|consen 203 LFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAE 282 (606)
T ss_pred HHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHH
Confidence 32 2221 11111 234443333333322110
Q ss_pred -------C---CHHHHHHHHHHHHHC-CCCC--C---------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 003028 444 -------G---FLDVAMDMYKKMQAA-GLSP--D---------TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLV 501 (856)
Q Consensus 444 -------g---~~~~A~~l~~~m~~~-g~~p--d---------~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ 501 (856)
+ .+.+|...+.+-... -..+ + ..+....-..+.-+|+.-.|..-|+..++.... +..
T Consensus 283 ~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~ 361 (606)
T KOG0547|consen 283 ALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNS 361 (606)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cch
Confidence 1 122222222211110 0011 1 111111122344578888888888888876433 222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 003028 502 TYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWG 581 (856)
Q Consensus 502 ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~ 581 (856)
.|--+..+|....+.++.+..|.+..+.... |..+|..-.+.+.-.+++++|..=|+....... -+...|--+-.+.-
T Consensus 362 lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 362 LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHH
Confidence 3777788888888888888888888775422 344666666777777888888888888776431 24445555555556
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------HHH--HHHHHHHHHh
Q 003028 582 KAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS-------LQT--YTLLLSCCTE 652 (856)
Q Consensus 582 k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd-------~~t--y~~Ll~a~~~ 652 (856)
+.+.+++++..|++.+++ ++.-+..||.....+..++++++|.+.|+..++ +.|+ ..+ -..++-. --
T Consensus 440 r~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~-qw 515 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVL-QW 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhhh-ch
Confidence 778888888888888765 566677888888888888888888888888876 2333 211 1222211 12
Q ss_pred cCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 003028 653 ARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMM 701 (856)
Q Consensus 653 ~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~ 701 (856)
.+++..|..++.+..+..+........|.....+.++..++++.|.+.+
T Consensus 516 k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 516 KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2667777888888777777665555554443334444444444444333
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.62 E-value=0.00014 Score=81.22 Aligned_cols=262 Identities=12% Similarity=0.014 Sum_probs=149.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003028 367 VGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYG----RANYLNEALDVFKQMQVVGCEPD-RVTYCTLIDIHA 441 (856)
Q Consensus 367 i~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~----~~g~~~~A~~lf~~m~~~g~~pd-~~ty~~Ll~~~~ 441 (856)
...+...|++++|.+++++..+.. +.|...+.. ...+. ..+..+.+.+.++. .....|+ ...+..+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 445567788888988888877652 334444442 22222 23445555555544 1112233 334445566778
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHHcCCHHH
Q 003028 442 KAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC-IPNL--VTYNIMIALQAKARNYQS 518 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~-~pd~--~ty~~Li~~~~~~g~~~~ 518 (856)
..|++++|...+++..+.. +.+...+..+...|...|++++|..++++...... .++. ..|..+...+...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 8888899998888888763 34566777888888888899998888888776422 1222 345567788888889999
Q ss_pred HHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCChHHHHHH--H-HHHHHcCC-CCCHhhHHHHHHHHHhcCCHHHHH
Q 003028 519 ALKLYRDMQNAGF-EPDKVTY-S--IVMEVLGHCGYLDEAEAV--F-AEMRRKNW-VPDEPVYGLLVDLWGKAGNVRKAW 590 (856)
Q Consensus 519 A~~ll~~M~~~gi-~pd~~ty-~--~ll~a~~~~g~~~~A~~l--~-~~m~~~g~-~pd~~~y~~Li~~~~k~g~~~~A~ 590 (856)
|+.+|++...... .+..... + .++.-+...|....+.+. + ........ ............++...|+.+.|.
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 9888888754322 1112111 1 223333334443333333 1 11111100 111111224556667778888888
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 591 EWYEAMLQAGLR--------PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 591 ~l~~~m~~~g~~--------pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.+++.+...... ..+...-...-++...|+.++|.+++...+.
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888877643211 0122222233344577888888887777654
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=0.00015 Score=78.10 Aligned_cols=299 Identities=13% Similarity=0.081 Sum_probs=211.2
Q ss_pred HHHHHHhhh--ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Q 003028 330 ANQVLKQLQ--DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVV-TYNRLIHSYG 406 (856)
Q Consensus 330 ~~~vL~~l~--~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~-ty~~Li~~~~ 406 (856)
|..++..+. ++..|...|-.+....-++-|++....+.+.+...|+.++|...|+..... .|+.. ........+.
T Consensus 200 wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~ 277 (564)
T KOG1174|consen 200 WIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLG 277 (564)
T ss_pred HHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHH
Confidence 344444442 444555555555544557778889999999999999999999999988753 34322 1222223346
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003028 407 RANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQ 486 (856)
Q Consensus 407 ~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~ 486 (856)
+.|+.+....+...+.... ......|-.-........+++.|+.+-++.++.. +.+...|-.--..+...++.++|.-
T Consensus 278 ~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 278 QEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred hccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHH
Confidence 7788888877777775432 2344555555666677888999999998888753 2244455444467788899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCChHHHHHHHHHHHHc
Q 003028 487 LFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVM-EVLG-HCGYLDEAEAVFAEMRRK 564 (856)
Q Consensus 487 lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll-~a~~-~~g~~~~A~~l~~~m~~~ 564 (856)
.|....... +-+...|.-|+..|.-.|.+.+|.-+-+...+. +.-+..+.+.+- ..|. ...--++|.++++.-.+.
T Consensus 356 aFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~ 433 (564)
T KOG1174|consen 356 AFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI 433 (564)
T ss_pred HHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc
Confidence 999877642 237889999999999999999988777654433 223444554441 2222 223457888888876654
Q ss_pred CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003028 565 NWVPD-EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 565 g~~pd-~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~ 640 (856)
.|+ ....+.+...+...|..+.+..+++.-.. ..||....+.|.+.+...+.+.+|++.|...+. +.|+.
T Consensus 434 --~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 434 --NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred --CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 343 45667777888899999999999998876 369999999999999999999999999999886 45654
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.58 E-value=5.8e-05 Score=82.09 Aligned_cols=94 Identities=15% Similarity=0.058 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK 477 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k 477 (856)
|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|...|+..++.. +-+..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444444455555555555555544432 2234445555555555555555555555554431 1123344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 003028 478 AGHLQAAHQLFCEMVN 493 (856)
Q Consensus 478 ~g~~~~A~~lf~~m~~ 493 (856)
.|++++|.+.|+...+
T Consensus 145 ~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555544443
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.57 E-value=0.00018 Score=80.17 Aligned_cols=304 Identities=11% Similarity=-0.060 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGC-QPNV-VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~-~pd~-~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
...|..+...+...++.+.+.+.+....+... ..+. .........+...|++++|.+++++..+.. +.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 34566666777777888887776666554311 1222 122223345677899999999999988753 444445442 2
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 438 DIHAK----AGFLDVAMDMYKKMQAAGLSPD-TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512 (856)
Q Consensus 438 ~~~~k----~g~~~~A~~l~~~m~~~g~~pd-~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~ 512 (856)
..+.. .+..+.+.+.+.. .....|+ ......+...+...|++++|.+.+++..+... .+...+..+...|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHH
Confidence 22322 4455555555544 1122333 34445666788999999999999999988642 356778888999999
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHhhH-H--HHHHHHHhcCC
Q 003028 513 ARNYQSALKLYRDMQNAGF-EPDK--VTYSIVMEVLGHCGYLDEAEAVFAEMRRKNW-VPDEPVY-G--LLVDLWGKAGN 585 (856)
Q Consensus 513 ~g~~~~A~~ll~~M~~~gi-~pd~--~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~-~pd~~~y-~--~Li~~~~k~g~ 585 (856)
.|++++|+.++++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999998876532 2332 3455678888999999999999999864332 1112111 1 33333444454
Q ss_pred HHHHHHH---HHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC------CCHHHHHHHHHH--HHhc
Q 003028 586 VRKAWEW---YEAMLQAG-LRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLK------PSLQTYTLLLSC--CTEA 653 (856)
Q Consensus 586 ~~~A~~l---~~~m~~~g-~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~------Pd~~ty~~Ll~a--~~~~ 653 (856)
.+.+.++ ........ .............++...|+.++|..++..+...... ....+-..++.+ +...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333333 22111110 0111222235677788999999999999998763222 111122223333 5577
Q ss_pred CCcchHHHHHHHHHH
Q 003028 654 RSPYDMGFCHELMAV 668 (856)
Q Consensus 654 g~~~~a~~l~~~m~~ 668 (856)
|+.++|..++.....
T Consensus 321 g~~~~A~~~L~~al~ 335 (355)
T cd05804 321 GNYATALELLGPVRD 335 (355)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888776655443
No 73
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.56 E-value=0.00092 Score=75.74 Aligned_cols=376 Identities=14% Similarity=0.169 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------------------HHHHHHHH
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANY----------------------LNEALDVF 418 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~----------------------~~~A~~lf 418 (856)
..|++|.+.|.+.|.++.|..+|++.... ..++.-|..+.++|++-.. ++-.+..|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 46788888888888888888888877654 2355556666666654221 11222223
Q ss_pred HHHHHcC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCCH
Q 003028 419 KQMQVVG-----------CEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPD------TFTYSVIINCLGKAGHL 481 (856)
Q Consensus 419 ~~m~~~g-----------~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd------~~ty~~Li~~y~k~g~~ 481 (856)
+.+.... -+.++.+|..-.. +..|+..+-...|.+.++. +.|- ...|..+.+.|-..|++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 3322211 0111222222222 1235566667777777654 2222 35677888899999999
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CC------CHHHHHHH
Q 003028 482 QAAHQLFCEMVNQGCIPN---LVTYNIMIALQAKARNYQSALKLYRDMQNAGF-----------EP------DKVTYSIV 541 (856)
Q Consensus 482 ~~A~~lf~~m~~~g~~pd---~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi-----------~p------d~~ty~~l 541 (856)
+.|..+|++..+-..+-- ..+|-.-...=.+..+++.|+++++.....-- ++ +...|+..
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 999999999877543311 24566666666778888889888876643211 11 22334455
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHH---
Q 003028 542 MEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNV-PTCNSLLSAFLR--- 617 (856)
Q Consensus 542 l~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~-~t~n~Li~ay~~--- 617 (856)
++..-..|-++....+++.+....+. ++.+.-.....+-...-++++.+++++-...--.|++ ..|+..+.-+.+
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 55555667788888888888876554 3333222222334556678888888765543223444 468888777764
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H-HhcCCcchHHHHHHHHHHcCCChHHH-HHhcCCCCCCc-ccHHHH
Q 003028 618 VGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSC-C-TEARSPYDMGFCHELMAVSGHPAHMF-LLSMPSPGPDG-QNVRDH 693 (856)
Q Consensus 618 ~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a-~-~~~g~~~~a~~l~~~m~~~g~~~~~~-~~~l~~~~~~~-~~~~~~ 693 (856)
.-.++.|..+|++.++ |+.|...-+..|+-+ + .+.|....+..+++.....-.....+ ++.+.+.-... -+....
T Consensus 563 g~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~T 641 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRT 641 (835)
T ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 2368999999999998 777766433333322 2 34466667777777765554433221 11111100000 000011
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 003028 694 VGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPD 744 (856)
Q Consensus 694 a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~~Pd 744 (856)
-..+.+.++..+..-.+...--..++=++.|.++.|..++.--.+. +.|.
T Consensus 642 R~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr 691 (835)
T KOG2047|consen 642 REIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPR 691 (835)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCc
Confidence 1112223333222222333345566778889999999998776554 3343
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.55 E-value=4.9e-05 Score=82.67 Aligned_cols=218 Identities=12% Similarity=0.033 Sum_probs=146.4
Q ss_pred ChhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHD--EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd--~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
..+.++.-+..+.......|+ ...|..+..+|.+.|+.++|...|++..+.. +.+...|+.+...|...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 334555555555543333333 3457788888999999999999999998853 3468899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 003028 417 VFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC 496 (856)
Q Consensus 417 lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~ 496 (856)
.|++..+.. +-+..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|...|.......
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 999998754 3356788888889999999999999999998863 443322222333455678999999997655432
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003028 497 IPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG---F--EP-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN 565 (856)
Q Consensus 497 ~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g---i--~p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g 565 (856)
.++...| .+ .+...|+..++ +.+..+.+.. + .| ....|..+...+...|++++|...|+...+.+
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2232222 22 22334555443 3444444221 1 11 12356667777777777777777777777644
No 75
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=7.1e-05 Score=83.59 Aligned_cols=266 Identities=14% Similarity=0.090 Sum_probs=210.2
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDV 417 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 417 (856)
+++...+++++.+.+..++.++ .+-.-|..+...|+..+-..+=..|.+. .+-...+|-++...|.--|+..+|.+.
T Consensus 258 c~f~~c~kit~~lle~dpfh~~--~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 258 CRFKECLKITEELLEKDPFHLP--CLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred ChHHHHHHHhHHHHhhCCCCcc--hHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 6888999999998877666555 6777788999999988888888888876 345788999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 003028 418 FKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA--GLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG 495 (856)
Q Consensus 418 f~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~--g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g 495 (856)
|.+.-... +.=...|-.....|+-.+..+.|+..|...-+. |.. -+..| +---|.+.+.++.|.+.|.+.....
T Consensus 335 ~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 335 FSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhccHHHHHHHHHHHHhcC
Confidence 99886543 222457888899999999999999998877554 221 12233 2335778899999999999887652
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003028 496 CIPNLVTYNIMIALQAKARNYQSALKLYRDMQNA----G--FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPD 569 (856)
Q Consensus 496 ~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~----g--i~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd 569 (856)
+-|....+-+--.....+.+.+|..+|+..... + ...-..+++.|-.+|.+.+.+++|...++...... .-+
T Consensus 411 -P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~ 488 (611)
T KOG1173|consen 411 -PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKD 488 (611)
T ss_pred -CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCc
Confidence 337778888887788889999999999876521 1 11134578889999999999999999999988754 458
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 570 EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSA 614 (856)
Q Consensus 570 ~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~a 614 (856)
..++.++.-.|...|+++.|.+.|++... +.|+-.+...++.-
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 88999999999999999999999999876 57887776766653
No 76
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.43 E-value=9.3e-05 Score=89.81 Aligned_cols=230 Identities=10% Similarity=0.108 Sum_probs=182.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 003028 427 EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSP-----DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLV 501 (856)
Q Consensus 427 ~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~p-----d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ 501 (856)
+-+...|-..|....+.++.++|.+++++.+.. +.+ -...|.++++.-...|.-+...++|++..+. .-...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 445677888999999999999999999998764 321 2457888888888888889999999999875 11345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHhhHHHHHHHH
Q 003028 502 TYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNW-VPDEPVYGLLVDLW 580 (856)
Q Consensus 502 ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~-~pd~~~y~~Li~~~ 580 (856)
.|..|...|.+.+.+++|.++|+.|.+.- .-....|...+..+.+..+-+.|..++.+..+.=. .-......-.++.-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78889999999999999999999998752 24566889999999999999999999999886421 12455566667777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCcch
Q 003028 581 GKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL--QTYTLLLSCCTEARSPYD 658 (856)
Q Consensus 581 ~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~--~ty~~Ll~a~~~~g~~~~ 658 (856)
.+.|+.+.+..+|+.+... .+.-...|+.+|+.=.++|+.+.+..+|++.+..++.|-. ..|.-.|..=.+.|+.+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 8999999999999999865 3557788999999999999999999999999998887765 455555655555566444
Q ss_pred HHH
Q 003028 659 MGF 661 (856)
Q Consensus 659 a~~ 661 (856)
++.
T Consensus 1690 vE~ 1692 (1710)
T KOG1070|consen 1690 VEY 1692 (1710)
T ss_pred HHH
Confidence 433
No 77
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.42 E-value=1e-05 Score=87.23 Aligned_cols=248 Identities=15% Similarity=0.176 Sum_probs=135.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003028 406 GRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAH 485 (856)
Q Consensus 406 ~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~ 485 (856)
.-.|.+..++.-.+ .....-..+......+.+++...|+++.++ .++.... .|.......+...+....+-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34566666665444 222211223344555666777777665433 3333322 455555544444333323444444
Q ss_pred HHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003028 486 QLFCEMVNQGCIPNLVTYN-IMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK 564 (856)
Q Consensus 486 ~lf~~m~~~g~~pd~~ty~-~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~ 564 (856)
.-+++........+-.++. .....+...|++++|+++++.- .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4443333222221222222 2224455667888887777542 34556666777788888888888888888754
Q ss_pred CCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003028 565 NWVPDEPVYGLLVDLWGK----AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 565 g~~pd~~~y~~Li~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~ 640 (856)
. .| .+...|..++.. .+.+.+|..+|+++.+. ..+++.+.|.+..++...|++++|.+++.+..+.+ .-+.
T Consensus 161 ~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~ 235 (290)
T PF04733_consen 161 D--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDP 235 (290)
T ss_dssp S--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHH
T ss_pred C--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCH
Confidence 2 23 333344444332 34678888888887654 46788888888888888888888888888876533 2234
Q ss_pred HHHHHHHHHHHhcCCc-chHHHHHHHHHHc
Q 003028 641 QTYTLLLSCCTEARSP-YDMGFCHELMAVS 669 (856)
Q Consensus 641 ~ty~~Ll~a~~~~g~~-~~a~~l~~~m~~~ 669 (856)
.|+..++-+....|+. +.+.+.+..+...
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 5666666666677775 3455566665554
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.38 E-value=0.00025 Score=71.29 Aligned_cols=195 Identities=12% Similarity=0.032 Sum_probs=106.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003028 400 RLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG 479 (856)
Q Consensus 400 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g 479 (856)
.|.-.|.+.|+...|..-+++..+.. +.+..+|..+...|-+.|+.+.|.+.|++..... +-+-.+.|..-..+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 34455666666666666666665543 3344555566666666666666666666655542 224445555555556666
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003028 480 HLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVF 558 (856)
Q Consensus 480 ~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~ 558 (856)
++++|...|++......-+ -..+|..+.-+..+.|+++.|.+.|++..+..... ..+...+.....+.|++-.|..++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~-~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF-PPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC-ChHHHHHHHHHHhcccchHHHHHH
Confidence 6666666666555442111 23455555555556666666666666555442211 224444555555566666666666
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 559 AEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ 598 (856)
Q Consensus 559 ~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~ 598 (856)
+.....+. ++....-..|..--..|+.+.|.++=..+..
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 65555443 5555555555555556666655555444443
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.37 E-value=0.0048 Score=70.41 Aligned_cols=96 Identities=10% Similarity=0.048 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHH-HhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 003028 643 YTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFL-LSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLH 721 (856)
Q Consensus 643 y~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~-~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~ 721 (856)
+..+...+-..|+++.+...++....+.+.....+ ....+. ...+..+++..+++.....+. +|+.+-.--.....
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~--kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIF--KHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHH--HhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHH
Confidence 33444456666777777776666666665443332 111000 011234555556665555443 46665556777788
Q ss_pred hCCChhHHHHHHHHHHhCCC
Q 003028 722 KSGLKEEAGSVWEVAAQKNV 741 (856)
Q Consensus 722 k~G~~eeA~~lf~~m~~~~~ 741 (856)
+..+.++|.++.......|.
T Consensus 451 rAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HccccHHHHHHHHHhhhccc
Confidence 88999999999888887765
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.35 E-value=0.0073 Score=68.99 Aligned_cols=392 Identities=14% Similarity=0.093 Sum_probs=205.5
Q ss_pred HHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003028 333 VLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLN 412 (856)
Q Consensus 333 vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~ 412 (856)
.|..+++.++|......-.+ +-..+.+.|..+.-.+....++++|.+.|......+ +-|...|.-|--.-++.++++
T Consensus 50 ~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred hhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhh
Confidence 34556777777776655543 222355667777777777778888888887776643 235556665555556666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHccCCHHHHH
Q 003028 413 EALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAG-LSPDTFTYSVII------NCLGKAGHLQAAH 485 (856)
Q Consensus 413 ~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g-~~pd~~ty~~Li------~~y~k~g~~~~A~ 485 (856)
...+.-.++.+.. +.....|..+.-++.-.|++..|..++++.++.. -.|+...|.-.. ....+.|.+++|.
T Consensus 127 ~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al 205 (700)
T KOG1156|consen 127 GYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL 205 (700)
T ss_pred hHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 6666666655432 3344556666666667777777777777776653 234544443222 2334566666666
Q ss_pred HHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHHHH-HHHHHH-
Q 003028 486 QLFCEMVNQGCIPNLVTY-NIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLG-HCGYLDEAE-AVFAEM- 561 (856)
Q Consensus 486 ~lf~~m~~~g~~pd~~ty-~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~-~~g~~~~A~-~l~~~m- 561 (856)
+.+...... ..|-..+ .+-...+.+.+++++|..+|..+... .||...|...+..+. +.-+.-++. .+|...
T Consensus 206 e~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 206 EHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred HHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 666554432 1122222 23445566677777777777766654 355554443333222 222222222 333332
Q ss_pred ---------------------------------HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HcC----
Q 003028 562 ---------------------------------RRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML----QAG---- 600 (856)
Q Consensus 562 ---------------------------------~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~----~~g---- 600 (856)
.+.|+. .++..+...|-.-...+-.+++.-.+. ..|
T Consensus 282 ~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 282 EKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred hcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 222322 123333333322111111111111111 111
Q ss_pred ------CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003028 601 ------LRPNVPTCN--SLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQT-YTLLLSCCTEARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 601 ------~~pd~~t~n--~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~t-y~~Ll~a~~~~g~~~~a~~l~~~m~~~g~ 671 (856)
-+|....|. .++..|-..|+++.|...++..++ ..|+..- |..=.+.+...|++++|..++++..+...
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 145555554 456777788888888888888775 4666543 33333557777888888887777666544
Q ss_pred ChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCc--hH------HHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 003028 672 PAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRES--KR------GLVDAVVDFLHKSGLKEEAGSVWEVAAQ 738 (856)
Q Consensus 672 ~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~--~~------~~~~aLi~~y~k~G~~eeA~~lf~~m~~ 738 (856)
+ +.+++.-...|.-..+..+.|..+.......+... +. .....=+.+|.++|++.+|++=|..+..
T Consensus 437 a-DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 437 A-DRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred h-hHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 2 22222111111111234455555555444444210 10 0111235678888888888777666543
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.35 E-value=0.00031 Score=70.62 Aligned_cols=205 Identities=16% Similarity=0.037 Sum_probs=122.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 434 CTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKA 513 (856)
Q Consensus 434 ~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~ 513 (856)
.-|.-.|...|+...|.+-+++.++.. +-+..+|..+...|-+.|+.+.|.+-|+...+.... +....|..-..+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 334456667777777777777776653 234556666667777777777777777666654222 455566666666677
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 003028 514 RNYQSALKLYRDMQNAGFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEW 592 (856)
Q Consensus 514 g~~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l 592 (856)
|++++|...|++....-..+. ..||..+.-+..+.|+.+.|+..|++..+.... ...+.-.+.+...+.|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 777777777776665422222 235555555556667777777777766654322 234455566666666777777766
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003028 593 YEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYT 644 (856)
Q Consensus 593 ~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~ 644 (856)
++.....+. ++..+....|..-...|+.+.|-+.=..+.. ..|...-|-
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q 244 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQ 244 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHH
Confidence 666665543 6666666666666666666666555444443 344444443
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=0.001 Score=71.81 Aligned_cols=271 Identities=14% Similarity=0.025 Sum_probs=163.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003028 391 CQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVT-YCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYS 469 (856)
Q Consensus 391 ~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t-y~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~ 469 (856)
++-|+.....+.+++...|+.++|...|++.+.. .|+..+ .....-.+.+.|+++....+...+.... .-+..-|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 4456777778888888888888888888877643 333222 2222334456777777777777665431 12233333
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003028 470 VIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCG 549 (856)
Q Consensus 470 ~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g 549 (856)
.-........+++.|..+-++-++... .++..|-.--..+...++.++|.-.|+..+... +-+...|.-|+..|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhc
Confidence 334444556677777777776665421 133333333356667778888888887776542 234667888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHH-HHHH-hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 003028 550 YLDEAEAVFAEMRRKNWVPDEPVYGLLV-DLWG-KAGNVRKAWEWYEAMLQAGLRPN-VPTCNSLLSAFLRVGQLSDAYH 626 (856)
Q Consensus 550 ~~~~A~~l~~~m~~~g~~pd~~~y~~Li-~~~~-k~g~~~~A~~l~~~m~~~g~~pd-~~t~n~Li~ay~~~g~~e~A~~ 626 (856)
.+.+|.-+-....+. +.-+..+.+.+- ..+. ...--++|.++++.-... .|+ ....+.+..-+...|..++++.
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHH
Confidence 887777665554432 122334443331 2221 112236777777766552 344 3455666677777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003028 627 LLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 627 l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~ 671 (856)
++++.+. ..||....+.|-+.+...+.+.++...+....+.++
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 8877775 567777777777777766666666655555544444
No 83
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.32 E-value=0.0017 Score=82.19 Aligned_cols=338 Identities=12% Similarity=-0.005 Sum_probs=163.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHHc
Q 003028 372 RARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGC------EPD--RVTYCTLIDIHAKA 443 (856)
Q Consensus 372 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~------~pd--~~ty~~Ll~~~~k~ 443 (856)
..|+++.+..+++.+.......+..........+...|++++|..++......-- .+. ......+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 3455555555554442111111122222333444556677777777766543210 011 11112222334566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcC
Q 003028 444 GFLDVAMDMYKKMQAAGLSPDT----FTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCI-PNLVTYNIMIALQAKAR 514 (856)
Q Consensus 444 g~~~~A~~l~~~m~~~g~~pd~----~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~-pd~~ty~~Li~~~~~~g 514 (856)
|++++|...+++..+.-...+. ...+.+...+...|++++|...+.+.... |.. ....++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 7777777777766543111111 23344445566677777777777665532 100 01223444555666677
Q ss_pred CHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC--CHhhHHHHHHHHHhc
Q 003028 515 NYQSALKLYRDMQNA----GFE--P-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK--NWVP--DEPVYGLLVDLWGKA 583 (856)
Q Consensus 515 ~~~~A~~ll~~M~~~----gi~--p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~--g~~p--d~~~y~~Li~~~~k~ 583 (856)
++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 777777776655431 211 1 1222333444455567777777776665432 1111 122333445556667
Q ss_pred CCHHHHHHHHHHHHHcCC-CCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcC
Q 003028 584 GNVRKAWEWYEAMLQAGL-RPNVPTC-----NSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQ---TYTLLLSCCTEAR 654 (856)
Q Consensus 584 g~~~~A~~l~~~m~~~g~-~pd~~t~-----n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~---ty~~Ll~a~~~~g 654 (856)
|+++.|...++......- ......+ ...+..+...|+.+.|...+............. .+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 777777777666643100 0001111 111233445667777777665544311111111 1223333455556
Q ss_pred CcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHhCCChhHHHHHH
Q 003028 655 SPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRES-KRGLVDAVVDFLHKSGLKEEAGSVW 733 (856)
Q Consensus 655 ~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~-~~~~~~aLi~~y~k~G~~eeA~~lf 733 (856)
+.++|...++..... . ...+... ...++..+..+|.+.|+.++|...+
T Consensus 706 ~~~~A~~~l~~al~~----------------------------~---~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L 754 (903)
T PRK04841 706 QFDEAEIILEELNEN----------------------------A---RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVL 754 (903)
T ss_pred CHHHHHHHHHHHHHH----------------------------H---HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555444333221 0 1111111 2335567888999999999999999
Q ss_pred HHHHhCC
Q 003028 734 EVAAQKN 740 (856)
Q Consensus 734 ~~m~~~~ 740 (856)
.+..+..
T Consensus 755 ~~Al~la 761 (903)
T PRK04841 755 LEALKLA 761 (903)
T ss_pred HHHHHHh
Confidence 9998764
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.0018 Score=68.56 Aligned_cols=345 Identities=11% Similarity=0.028 Sum_probs=175.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF 445 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~ 445 (856)
+..++...|++++|...+..+... -.++...|-.|..++.-.|.+.+|..+..+. +.++..-..|+..-.+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCc
Confidence 345556677777777777776653 2456666666666666677777777665543 2334444555666666777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIM-IALQAKARNYQSALKLYR 524 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~L-i~~~~~~g~~~~A~~ll~ 524 (856)
-++-..+.+.+... ..---+|.......-.+.+|.+++...... .|+-...|.- .-+|.+..-++-+.++++
T Consensus 137 Ek~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 137 EKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred HHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 76666666665432 122223333333444567777777776653 2444444443 334556666666666666
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhc--CC---------------------------------hHHHHHHHHHHHHcCCCC
Q 003028 525 DMQNAGFEPD-KVTYSIVMEVLGHC--GY---------------------------------LDEAEAVFAEMRRKNWVP 568 (856)
Q Consensus 525 ~M~~~gi~pd-~~ty~~ll~a~~~~--g~---------------------------------~~~A~~l~~~m~~~g~~p 568 (856)
--... -|| ....+..+....+. |+ -+.|.+++--+.+. -
T Consensus 210 vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--I- 284 (557)
T KOG3785|consen 210 VYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--I- 284 (557)
T ss_pred HHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--C-
Confidence 54443 123 22222222111111 22 12222222222211 1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCC-------HHHHHHHHHHHHHCCCCCC
Q 003028 569 DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSA--FLRVGQ-------LSDAYHLLQGMLNLGLKPS 639 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~a--y~~~g~-------~e~A~~l~~~M~~~g~~Pd 639 (856)
+..--.|+-.|.+.+++.+|..+.+++. |... |..++.+ ++..|+ ..-|...|+-.-+.+..-|
T Consensus 285 -PEARlNL~iYyL~q~dVqeA~~L~Kdl~-----PttP-~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD 357 (557)
T KOG3785|consen 285 -PEARLNLIIYYLNQNDVQEAISLCKDLD-----PTTP-YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECD 357 (557)
T ss_pred -hHhhhhheeeecccccHHHHHHHHhhcC-----CCCh-HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccc
Confidence 1222344556778888888888877664 2211 2222222 223332 4445555554433333322
Q ss_pred H-HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 003028 640 L-QTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVD 718 (856)
Q Consensus 640 ~-~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~ 718 (856)
. .-..++.+++.-..++++....+.-+...-...+.|...+..+....+ ...++++++-.+...++..+..-...|..
T Consensus 358 TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atg-ny~eaEelf~~is~~~ikn~~~Y~s~LAr 436 (557)
T KOG3785|consen 358 TIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATG-NYVEAEELFIRISGPEIKNKILYKSMLAR 436 (557)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhc-ChHHHHHHHhhhcChhhhhhHHHHHHHHH
Confidence 1 122233334444445566666666665554444444444333222222 34555666655555544434333445667
Q ss_pred HHHhCCChhHHHHHHHHH
Q 003028 719 FLHKSGLKEEAGSVWEVA 736 (856)
Q Consensus 719 ~y~k~G~~eeA~~lf~~m 736 (856)
.|.+++.++-|++++=++
T Consensus 437 Cyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHhcCCchHHHHHHHhc
Confidence 888999999887665544
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.0015 Score=69.13 Aligned_cols=129 Identities=11% Similarity=0.051 Sum_probs=68.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 541 VMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQ 620 (856)
Q Consensus 541 ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~ 620 (856)
+..++.-..++++..-.+..++..-...|...| .+.++++..|++.+|+++|-.+....++-+..-...|..+|.+++.
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC
Confidence 333344444555555555555543333233322 3566677777777777777666543333233333445566777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCcchHHHHHHHHHHcCCCh
Q 003028 621 LSDAYHLLQGMLNLGLKPSLQTYTLLL-SCCTEARSPYDMGFCHELMAVSGHPA 673 (856)
Q Consensus 621 ~e~A~~l~~~M~~~g~~Pd~~ty~~Ll-~a~~~~g~~~~a~~l~~~m~~~g~~~ 673 (856)
++-|++++-++. -..+..+..-+| +.|.+.+.+.-+.+.++++....+.+
T Consensus 444 P~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 444 PQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred chHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 777766654442 222333333333 34666776666666666666665544
No 86
>PF12854 PPR_1: PPR repeat
Probab=98.28 E-value=9.4e-07 Score=62.22 Aligned_cols=32 Identities=50% Similarity=1.026 Sum_probs=17.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 390 GCQPNVVTYNRLIHSYGRANYLNEALDVFKQM 421 (856)
Q Consensus 390 g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m 421 (856)
|+.||..|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 87
>PF12854 PPR_1: PPR repeat
Probab=98.27 E-value=1e-06 Score=61.99 Aligned_cols=32 Identities=31% Similarity=0.727 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 600 GLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGM 631 (856)
Q Consensus 600 g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M 631 (856)
|+.||..|||+||.+|++.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777776
No 88
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.25 E-value=0.0002 Score=81.30 Aligned_cols=217 Identities=20% Similarity=0.223 Sum_probs=138.4
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 003028 475 LGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEA 554 (856)
Q Consensus 475 y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A 554 (856)
+...|++|.|...|-+... .-.-|.+......|.+|+.+++.+++.... ..-|..+.+.|+..|+++.|
T Consensus 716 l~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHH
Confidence 3445555555555443321 122355666778899999999988876432 23567788889999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 555 EAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNL 634 (856)
Q Consensus 555 ~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~ 634 (856)
+++|-+. ..++-.|++|.+.|+++.|.++-++... -.-....|-+-..-+-++|++.+|.+++-.+.
T Consensus 785 e~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~-- 851 (1636)
T KOG3616|consen 785 EELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG-- 851 (1636)
T ss_pred HHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc--
Confidence 9998653 2467788999999999999998776642 23455667777777888999999998886543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHH
Q 003028 635 GLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVD 714 (856)
Q Consensus 635 g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 714 (856)
.|+ ..|..|-+.|..+++..+.++- +|...|.........+...+....+-..+++. .-|.
T Consensus 852 --~p~-----~aiqmydk~~~~ddmirlv~k~--h~d~l~dt~~~f~~e~e~~g~lkaae~~flea----------~d~k 912 (1636)
T KOG3616|consen 852 --EPD-----KAIQMYDKHGLDDDMIRLVEKH--HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA----------GDFK 912 (1636)
T ss_pred --Cch-----HHHHHHHhhCcchHHHHHHHHh--ChhhhhHHHHHHHHHHHhccChhHHHHHHHhh----------hhHH
Confidence 354 3466777888877777665432 22223333333222222222222222222221 2256
Q ss_pred HHHHHHHhCCChhHHHHHHH
Q 003028 715 AVVDFLHKSGLKEEAGSVWE 734 (856)
Q Consensus 715 aLi~~y~k~G~~eeA~~lf~ 734 (856)
+-+++|-.++.|++|-++-+
T Consensus 913 aavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHHh
Confidence 77888888888888876644
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.24 E-value=2.8e-05 Score=83.84 Aligned_cols=226 Identities=16% Similarity=0.145 Sum_probs=136.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSP-DTFTYSVIINCL 475 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~p-d~~ty~~Li~~y 475 (856)
...-+.++|.-.|+.+.++ .++.... .|.......+...+....+-+.+..-+++........ +.........+|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444556777777766443 3333322 5555555444433333334444444444433332222 223333333566
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCh
Q 003028 476 GKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGH----CGYL 551 (856)
Q Consensus 476 ~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~----~g~~ 551 (856)
...|++++|.++++.- .+.......+..|.+.++++.|.+.++.|.+.. .| .+...+..++.. .+.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhH
Confidence 7778888888877643 256677777888888888888888888887642 34 345556555543 2368
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q 003028 552 DEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQL-SDAYHLLQG 630 (856)
Q Consensus 552 ~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~-e~A~~l~~~ 630 (856)
.+|..+|+++.. ...+++.+.+.+..++...|++++|..++++..+.. +-+..+...+|......|+. +.+.+++.+
T Consensus 184 ~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 888888888765 345678888888888888899999988888876543 34566666677777777777 566777777
Q ss_pred HHHCCCCCC
Q 003028 631 MLNLGLKPS 639 (856)
Q Consensus 631 M~~~g~~Pd 639 (856)
+.. ..|+
T Consensus 262 L~~--~~p~ 268 (290)
T PF04733_consen 262 LKQ--SNPN 268 (290)
T ss_dssp CHH--HTTT
T ss_pred HHH--hCCC
Confidence 775 3454
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=0.00034 Score=80.66 Aligned_cols=243 Identities=16% Similarity=0.188 Sum_probs=138.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C--------CCCCHHHHHHHHHHH
Q 003028 370 LGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVV-G--------CEPDRVTYCTLIDIH 440 (856)
Q Consensus 370 ~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~-g--------~~pd~~ty~~Ll~~~ 440 (856)
|..-|+.+.|.+-...+. +...|..|.++|.+..+++-|.-.+-.|... | -.++ .+=.-+.-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 334455555544444333 2344555555555555555555544444321 0 0111 1111122223
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 441 AKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSAL 520 (856)
Q Consensus 441 ~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 520 (856)
...|.+++|+.+|.+.++ |..|=+.|-..|.+++|.++-+.=-.-. =..||......+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHH
Confidence 455666666666666544 2334445556666666666554321110 1123444444444455555555
Q ss_pred HHHHHH----------HHcC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 003028 521 KLYRDM----------QNAG---------FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWG 581 (856)
Q Consensus 521 ~ll~~M----------~~~g---------i~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~ 581 (856)
+.|++. .... -..|...|..--..+-..|+++.|+.+|...+. |-.++...|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 555432 1110 112444555566666677888888888877654 567788888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003028 582 KAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARS 655 (856)
Q Consensus 582 k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~ 655 (856)
-.|+.++|-++-++- -|....-.|.+.|-..|++.+|..+|-+.. +|...|+.|.+.+.
T Consensus 950 ~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~ 1008 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDM 1008 (1416)
T ss_pred eccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCH
Confidence 899999998887653 366777889999999999999999998764 56777777755543
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.21 E-value=0.0099 Score=69.22 Aligned_cols=378 Identities=15% Similarity=0.100 Sum_probs=186.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHH
Q 003028 356 FKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEP-DRVTYC 434 (856)
Q Consensus 356 ~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p-d~~ty~ 434 (856)
+.-|...|..|.-++..+|+++.+.+.|++.... +--....|+.+-..|.-.|.-..|..++++-....-.| |+..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4456777888888888888888888888877643 22355667777777888888777877777654332123 333333
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHccC-----------CHHHHHHHHHHHHHcC-CC
Q 003028 435 TLIDIHA-KAGFLDVAMDMYKKMQAA--GL--SPDTFTYSVIINCLGKAG-----------HLQAAHQLFCEMVNQG-CI 497 (856)
Q Consensus 435 ~Ll~~~~-k~g~~~~A~~l~~~m~~~--g~--~pd~~ty~~Li~~y~k~g-----------~~~~A~~lf~~m~~~g-~~ 497 (856)
..-..|. +.+.+++++.+-.+.+.. +. ......|-.+--+|...- ...++.+.+++..+.+ ..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3333333 335556655555555441 10 112233333333332211 1234445555544432 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC--------
Q 003028 498 PNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK-NWVP-------- 568 (856)
Q Consensus 498 pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~-g~~p-------- 568 (856)
|++.-| +.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++.+|+.+.+..... +...
T Consensus 478 p~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 222222 22234455566666666666665544455555555555555556666666655544432 1100
Q ss_pred ----------CHhhHHHHHHHHHh---------c--------------CCHHHHHHHHHHH--------HHcC-------
Q 003028 569 ----------DEPVYGLLVDLWGK---------A--------------GNVRKAWEWYEAM--------LQAG------- 600 (856)
Q Consensus 569 ----------d~~~y~~Li~~~~k---------~--------------g~~~~A~~l~~~m--------~~~g------- 600 (856)
-..|...++..+-. . .+..+|......+ ...+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 00111111111110 0 0000010000000 0000
Q ss_pred --C--CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003028 601 --L--RPN------VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSG 670 (856)
Q Consensus 601 --~--~pd------~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g 670 (856)
+ .|+ ...|......|.+.+..++|...+.+.... ..-....|...-..+...|.+++|...+......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0 011 235666677777777777777666666542 12222333333344556666677766666555554
Q ss_pred CChHHHHHhcCCCCCC-cccHH-HHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 003028 671 HPAHMFLLSMPSPGPD-GQNVR-DHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQK 739 (856)
Q Consensus 671 ~~~~~~~~~l~~~~~~-~~~~~-~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~ 739 (856)
+.....+..+...+.. |.... +...-+.+.+..... +...|-.|+..+-+.|+.++|.+.|....+.
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~--n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL--NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 4322222211111111 11112 222233344443333 3456778999999999999999999988765
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=0.001 Score=76.84 Aligned_cols=226 Identities=16% Similarity=0.221 Sum_probs=158.9
Q ss_pred hhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C--------CCCCHHHHHHHHHHHHh
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRD-G--------CQPNVVTYNRLIHSYGR 407 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~-g--------~~pd~~ty~~Li~~~~~ 407 (856)
.++.+.|.+-.+.++ +...|..|..+|.+..+++-|.-.+-.|... | -.++ .+=....-....
T Consensus 741 iG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 378888888877765 4568999999999999999888777766532 1 1121 222222233467
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003028 408 ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQL 487 (856)
Q Consensus 408 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~l 487 (856)
.|.+++|+.+|.+-++ |..|=..|...|.+++|.++-+.=.+..+ ..||..-..-+-..++.+.|++.
T Consensus 813 LgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHH
Confidence 7999999999998875 34455667788999999998775433322 24565556666667778777777
Q ss_pred HHHH----------HHcC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003028 488 FCEM----------VNQG---------CIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHC 548 (856)
Q Consensus 488 f~~m----------~~~g---------~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~ 548 (856)
|++- .... -..|...|.-.-..+-..|+.+.|+.+|...++ |-+++...|-.
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 6642 1110 012444455555555668888999988887763 56788888899
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 549 GYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 549 g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
|+.++|-++-++ .| |....-.|.+.|-..|++.+|..+|-+..
T Consensus 952 Gk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 952 GKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999988654 23 55677788999999999999999998765
No 93
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.0092 Score=67.51 Aligned_cols=110 Identities=19% Similarity=0.149 Sum_probs=79.3
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhcCCHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRL----IHSYGRANYLNE 413 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~L----i~~~~~~g~~~~ 413 (856)
+++++|++....+.. +.+-+...+..=+-++.+.+++++|+.+.+.-. -..+++.. ..+..+.+..++
T Consensus 26 ~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 26 GEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred hHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHHHHHHHcccHHH
Confidence 577889998888874 334456667777788889999999996554322 12223333 334457899999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003028 414 ALDVFKQMQVVGCEPD-RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAG 460 (856)
Q Consensus 414 A~~lf~~m~~~g~~pd-~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g 460 (856)
|+..++ |+.++ ..+...-...|.+.|++++|..+|+.+.+++
T Consensus 98 alk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 98 ALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 999998 33343 3467777788899999999999999998875
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.12 E-value=0.0037 Score=78.99 Aligned_cols=299 Identities=15% Similarity=0.084 Sum_probs=151.8
Q ss_pred hcCCHHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 003028 372 RARQFGAINKLLDQMVRDGC------QPNV--VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD----RVTYCTLIDI 439 (856)
Q Consensus 372 k~g~~~~A~~lf~~m~~~g~------~pd~--~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Ll~~ 439 (856)
..|++++|..++......-- .+.. .....+-..+...|++++|...+++....--..+ ...++.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 45667777766665543200 0111 1112222344567777777777776654211111 1234455555
Q ss_pred HHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAA----GL-SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCI--P-NLVTYNIMI 507 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~----g~-~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~--p-d~~ty~~Li 507 (856)
+...|++++|...+++.... |- .....++..+...+...|++++|...+++.... +.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 66677777777777666532 11 111234444555666777777777776654431 211 1 223344455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHh--h--HHHHH
Q 003028 508 ALQAKARNYQSALKLYRDMQNA--GFEPD--KVTYSIVMEVLGHCGYLDEAEAVFAEMRRK--NWVPDEP--V--YGLLV 577 (856)
Q Consensus 508 ~~~~~~g~~~~A~~ll~~M~~~--gi~pd--~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~--g~~pd~~--~--y~~Li 577 (856)
..+...|++++|...+.+.... ...+. ...+..+...+...|+.++|...+...... ....... . ....+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 5566667777777777665432 11121 223334445566667777777777666432 1110000 0 01122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHH
Q 003028 578 DLWGKAGNVRKAWEWYEAMLQAGLRPN---VPTCNSLLSAFLRVGQLSDAYHLLQGMLN----LGLKPSL-QTYTLLLSC 649 (856)
Q Consensus 578 ~~~~k~g~~~~A~~l~~~m~~~g~~pd---~~t~n~Li~ay~~~g~~e~A~~l~~~M~~----~g~~Pd~-~ty~~Ll~a 649 (856)
..+...|+.+.|..++........... ...+..+..++...|++++|..++++... .|..++. .++..+-.+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 334456777777777665443211111 11134556666777777777777776654 2222222 334444445
Q ss_pred HHhcCCcchHHHHHHHHHHcC
Q 003028 650 CTEARSPYDMGFCHELMAVSG 670 (856)
Q Consensus 650 ~~~~g~~~~a~~l~~~m~~~g 670 (856)
+...|+.++|...+....+..
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 667777777766666555543
No 95
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.0099 Score=67.28 Aligned_cols=146 Identities=13% Similarity=0.038 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 003028 585 NVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQ--------GMLNLGLKPSLQTYTLLLSCCTEARSP 656 (856)
Q Consensus 585 ~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~--------~M~~~g~~Pd~~ty~~Ll~a~~~~g~~ 656 (856)
.+.+|.+++...-+..-.-.....-.++......|+++.|++++. .+.+.+..|-.+.+ +...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a--iv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA--IVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH--HHHHHHhccCC
Confidence 466777777766654322224555666777778888888888888 66665556654443 33444555554
Q ss_pred chHHHHHHHHHHc------CCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHH
Q 003028 657 YDMGFCHELMAVS------GHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAG 730 (856)
Q Consensus 657 ~~a~~l~~~m~~~------g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~ 730 (856)
+.+..++...... +......+......+....+..+++...++.+..... .+..+...++.+|++. +++.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~-~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP-NDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC-chHHHHHHHHHHHHhc-CHHHHH
Confidence 5555554433221 1111111111111111111234555666666655433 3566677899999876 457776
Q ss_pred HHHH
Q 003028 731 SVWE 734 (856)
Q Consensus 731 ~lf~ 734 (856)
.+-+
T Consensus 512 ~l~k 515 (652)
T KOG2376|consen 512 SLSK 515 (652)
T ss_pred HHhh
Confidence 5543
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.00086 Score=69.42 Aligned_cols=183 Identities=17% Similarity=0.174 Sum_probs=93.8
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRL-IHSYGRANYLNEALD 416 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~L-i~~~~~~g~~~~A~~ 416 (856)
+++..|.+++....+.. ..+....+.|..+|....++..|-..++++... .|...-|... ...+-+.+.+.+|+.
T Consensus 24 ~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred hhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 34555555555443321 124455566666666666666666666666543 3444444332 234455566666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 417 VFKQMQVVGCEPDRVTYCTLIDI--HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 417 lf~~m~~~g~~pd~~ty~~Ll~~--~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
+...|... ++...-..-+.+ ....+++..+..+++++...| +..+.+...-...+.|++++|.+-|....+-
T Consensus 100 V~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 100 VAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 66666431 222111111221 123455555565655543221 2333333333445667777777777666654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003028 495 GCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGF 531 (856)
Q Consensus 495 g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi 531 (856)
+---....||.-+. ..+.|+++.|+++..++.+.|+
T Consensus 174 sGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 174 SGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred cCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence 33334556665443 3355667777777777766654
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.01 E-value=0.0028 Score=77.53 Aligned_cols=214 Identities=13% Similarity=0.151 Sum_probs=121.5
Q ss_pred hhChhHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHD---EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNE 413 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd---~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 413 (856)
+.+.+.|+++++++...-+++-. ...|.++++.-...|.-+...++|++..+. + -....|..|...|.+...+++
T Consensus 1471 lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-c-d~~~V~~~L~~iy~k~ek~~~ 1548 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-C-DAYTVHLKLLGIYEKSEKNDE 1548 (1710)
T ss_pred hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-c-chHHHHHHHHHHHHHhhcchh
Confidence 34556666666666543222211 235666666666666666666677666653 1 123346666667777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003028 414 ALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSP--DTFTYSVIINCLGKAGHLQAAHQLFCEM 491 (856)
Q Consensus 414 A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~p--d~~ty~~Li~~y~k~g~~~~A~~lf~~m 491 (856)
|.++|+.|.+. +......|..++..+.+..+-+.|..++.+..+. ++- ........+..-.+.|+.+.+..+|+.+
T Consensus 1549 A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgl 1626 (1710)
T KOG1070|consen 1549 ADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGL 1626 (1710)
T ss_pred HHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHH
Confidence 77777777553 2345556666666666666666666666666553 111 2233333444455666777777777666
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHH
Q 003028 492 VNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD--KVTYSIVMEVLGHCGYLDEAE 555 (856)
Q Consensus 492 ~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd--~~ty~~ll~a~~~~g~~~~A~ 555 (856)
..... .-...|+..|+.=.++|+.+.+..+|++....++.|- .+.|.-.++.--..|+-..++
T Consensus 1627 l~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1627 LSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred HhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 65422 2455677777777777777777777777666665544 233444444333444443333
No 98
>PLN02789 farnesyltranstransferase
Probab=98.00 E-value=0.0044 Score=67.84 Aligned_cols=205 Identities=13% Similarity=0.078 Sum_probs=92.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--HH
Q 003028 372 RARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN-YLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFL--DV 448 (856)
Q Consensus 372 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g-~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~--~~ 448 (856)
..++.++|..+++++++.. +-+...|+..-.++...+ .++++++.++++.+.. +-+..+|+..-.++.+.|.. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 3344555555555555421 112233433333333334 3455555555555432 23333444433333344431 44
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CC----HHHHHH
Q 003028 449 AMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKA---RN----YQSALK 521 (856)
Q Consensus 449 A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~---g~----~~~A~~ 521 (856)
++.+++++++.. +-|-.+|+-...++...|+++++.+.++++.+.+.. |...|+.....+.+. |. .++.++
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 455555555442 224555555555555555555666666555554333 444454444333332 11 134445
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 003028 522 LYRDMQNAGFEPDKVTYSIVMEVLGHC----GYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGK 582 (856)
Q Consensus 522 ll~~M~~~gi~pd~~ty~~ll~a~~~~----g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k 582 (856)
+..++.... +-|...|+.+...+... +...+|..++.+..+.+ ..+......|++.|+.
T Consensus 205 y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 554444432 12344555555444442 23344555555554433 2244555666666654
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.97 E-value=0.0016 Score=75.22 Aligned_cols=214 Identities=13% Similarity=0.104 Sum_probs=134.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 003028 399 NRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKA 478 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~ 478 (856)
..+...+...|-...|+.+|+++. .|.-+|.+|+..|+..+|..+..+..+. +||...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 445566667777777777777664 3455666777777777777777766653 56777777777766666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003028 479 GHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVF 558 (856)
Q Consensus 479 g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~ 558 (856)
.-+++|.++++..... .-..+.......++++++.+.|+.-.+.. ..-..+|-.+--+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 6677777777654332 11111112223567777777776544321 112335555555556667777777777
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 559 AEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 559 ~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.....-. +-+...||.+-.+|.+.++-.+|...+.+..+.. .-+...|...+..-.+.|.+++|++.+.+|..
T Consensus 543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 7666532 2245667777777777777777777777777654 44555666666677777777777777777664
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.007 Score=71.77 Aligned_cols=201 Identities=13% Similarity=0.180 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003028 396 VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCL 475 (856)
Q Consensus 396 ~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y 475 (856)
..|..+..+-.+.+.+.+|.+-|-+. -|+..|..+++.+.+.|.+++-.+.+....+..-.|. .=+.||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHH
Confidence 34555555555555555554444322 2334445555555555555555544444443332222 223444455
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003028 476 GKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAE 555 (856)
Q Consensus 476 ~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~ 555 (856)
++.+++.+.++++. -||......+-+-|...+.++.|.-+|... .-|..|...+...|++..|.
T Consensus 1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHH
Confidence 55554444333221 134444444444444455554444444322 12344444444444444443
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 556 AVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGM 631 (856)
Q Consensus 556 ~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M 631 (856)
..-. +. .+..+|..+-.+|...+.+.-| +|....+-....-...|+.-|...|-+++.+.+++..
T Consensus 1241 D~aR---KA---ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1241 DAAR---KA---NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHhh---hc---cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 3221 11 1333444444444443333322 1211112223333445555555555555555555443
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.94 E-value=0.00056 Score=78.76 Aligned_cols=238 Identities=13% Similarity=0.084 Sum_probs=184.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 357 KHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTL 436 (856)
Q Consensus 357 ~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~L 436 (856)
.|--..-..+...+.+.|-...|..+|+.+.. |.-+|.+|+..|+..+|..+..+-.+. +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 33334445678889999999999999987653 888999999999999999999888773 7999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 437 IDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNY 516 (856)
Q Consensus 437 l~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~ 516 (856)
.+.....--+++|.++.+..-.. .-..+.......++++++.+.|+.-.+.. +.-..+|-.+-.+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 99888888889999988775332 22222223344789999999998766542 23567888888888999999
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003028 517 QSALKLYRDMQNAGFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEA 595 (856)
Q Consensus 517 ~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~ 595 (856)
..|.+.|..-... .|| ...|+.+-.+|.+.++..+|...+++..+.+ .-+..+|...+....+.|.+++|.+.+++
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999987763 565 5689999999999999999999999999987 44667788888888999999999999999
Q ss_pred HHHcC-CCCCHHHHHHHHHHHH
Q 003028 596 MLQAG-LRPNVPTCNSLLSAFL 616 (856)
Q Consensus 596 m~~~g-~~pd~~t~n~Li~ay~ 616 (856)
+.+.. ...|......++....
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHH
Confidence 87521 1124444444444433
No 102
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.92 E-value=0.0027 Score=77.17 Aligned_cols=223 Identities=7% Similarity=0.046 Sum_probs=140.6
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003028 355 GFKH-DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNV-VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVT 432 (856)
Q Consensus 355 g~~p-d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~-~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t 432 (856)
.+.| +...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+++.-+ .
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~------------ 88 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N------------ 88 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h------------
Confidence 3444 4678899999999999999999999977764 3543 3333333466677776665555 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 433 YCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512 (856)
Q Consensus 433 y~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~ 512 (856)
++.......++..+..++..|... .-+...+..|..+|-+.|+.++|..+++++.+.. +-|....|.+...|..
T Consensus 89 ---~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 89 ---LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred ---hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 233333344454444445555543 2355677788888888888888888888888876 3377888888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------------------CCCCCHhhH
Q 003028 513 ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK-------------------NWVPDEPVY 573 (856)
Q Consensus 513 ~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~-------------------g~~pd~~~y 573 (856)
. ++++|++++.+.... +....++..+..+|..+... +..--..++
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~ 226 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLL 226 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHH
Confidence 8 888888888776553 23333444444444444432 222223344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 574 GLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFL 616 (856)
Q Consensus 574 ~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~ 616 (856)
-.|-..|-..++++++..+|+.+.+.. +.|.....-++.+|.
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 444555566666666666666666543 335555555666555
No 103
>PLN02789 farnesyltranstransferase
Probab=97.92 E-value=0.008 Score=65.82 Aligned_cols=209 Identities=11% Similarity=0.065 Sum_probs=129.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-
Q 003028 403 HSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG-FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH- 480 (856)
Q Consensus 403 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g-~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~- 480 (856)
..+...++.++|+.++.++.+.. +-+..+|+..-.++...| ++++++..++++.+.. +-+..+|+..-..+.+.|+
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33445677888999998888753 334456666666666667 5788999998888764 3355566655444555555
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCh----H
Q 003028 481 -LQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHC---GYL----D 552 (856)
Q Consensus 481 -~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~---g~~----~ 552 (856)
.+++..+++.+.+...+ |..+|+...-++...|+++++++.++++.+.... |...|+.....+.+. |.. +
T Consensus 123 ~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 36778888888766443 7788888888888888899999999988877543 344555554444433 222 3
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 553 EAEAVFAEMRRKNWVPDEPVYGLLVDLWGKA----GNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR 617 (856)
Q Consensus 553 ~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~----g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~ 617 (856)
+.......+.... +-+...|+-+...+... +...+|..++.+....+ ..+......|++.|+.
T Consensus 201 ~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4444444444433 23455566666555552 23345666666655432 2345555666666654
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.90 E-value=0.0013 Score=68.70 Aligned_cols=184 Identities=10% Similarity=0.041 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN-V---VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDR--VT 432 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd-~---~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~t 432 (856)
....+-.+...+.+.|+++.|...|+++... .|+ . ..+..+..+|.+.|++++|...|+++.+..-.... .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4556777788888899999999999988764 233 2 45677788888899999999999998765311111 13
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003028 433 YCTLIDIHAKA--------GFLDVAMDMYKKMQAAGLSPD-TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTY 503 (856)
Q Consensus 433 y~~Ll~~~~k~--------g~~~~A~~l~~~m~~~g~~pd-~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty 503 (856)
+..+..++.+. |++++|.+.|+.+.... |+ ...+..+..... .. ..+. ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~------~~~~--------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LR------NRLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HH------HHHH--------HHH
Confidence 44444555544 67888888888887652 33 222222211100 00 0000 011
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003028 504 NIMIALQAKARNYQSALKLYRDMQNAGF-EP-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK 564 (856)
Q Consensus 504 ~~Li~~~~~~g~~~~A~~ll~~M~~~gi-~p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~ 564 (856)
..+...|.+.|++++|+..|....+... .| ....+..+..++...|+.++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455678888888888888888876532 12 2457778888888888888888888877654
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.90 E-value=0.018 Score=61.08 Aligned_cols=191 Identities=14% Similarity=0.074 Sum_probs=107.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 437 IDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNY 516 (856)
Q Consensus 437 l~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~ 516 (856)
+..+...|+...|+.+...+++. .+-|...|..-..+|...|++..|..=++...+.... +..++--+-..+...|+.
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhH
Confidence 34455567888888888888776 3457777777788888888888777655555443222 555566666777778888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHH-------------HHHHHhcCChHHHHHHHHHHHHcCCCCCH---hhHHHHHHHH
Q 003028 517 QSALKLYRDMQNAGFEPDKVTYSIV-------------MEVLGHCGYLDEAEAVFAEMRRKNWVPDE---PVYGLLVDLW 580 (856)
Q Consensus 517 ~~A~~ll~~M~~~gi~pd~~ty~~l-------------l~a~~~~g~~~~A~~l~~~m~~~g~~pd~---~~y~~Li~~~ 580 (856)
+.++...++-.+. .||....-.. +......+++.++.+-.+...+....... ..+..+-.+|
T Consensus 240 ~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 240 ENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc
Confidence 8887777776653 4553321111 11122234444444444444433221111 1223334444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 581 GKAGNVRKAWEWYEAMLQAGLRPN-VPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 581 ~k~g~~~~A~~l~~~m~~~g~~pd-~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
...+++.+|.+...+..+. .|+ +.++---..+|.-..++++|+.=|+...+
T Consensus 318 ~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 5555666666666555542 233 55555555666666666666666665554
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.89 E-value=0.0015 Score=68.32 Aligned_cols=186 Identities=13% Similarity=0.021 Sum_probs=130.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-HHH
Q 003028 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDR---VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLS-PD-TFT 467 (856)
Q Consensus 393 pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~---~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~-pd-~~t 467 (856)
.....+-.+...+.+.|++++|...|+++.... +.+. .++..+..++.+.|++++|...++++.+.... +. ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 356677888888999999999999999987653 2222 46777888999999999999999999876321 11 124
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003028 468 YSVIINCLGKA--------GHLQAAHQLFCEMVNQGCIPNL-VTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTY 538 (856)
Q Consensus 468 y~~Li~~y~k~--------g~~~~A~~lf~~m~~~g~~pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty 538 (856)
+..+..++... |+.++|.+.|+.+.... |+. ..+..+..... ... .+. ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~~--------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HHH--------HHH
Confidence 44455555544 77889999999888752 332 23322221111 000 000 011
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 539 SIVMEVLGHCGYLDEAEAVFAEMRRKNW--VPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA 599 (856)
Q Consensus 539 ~~ll~a~~~~g~~~~A~~l~~~m~~~g~--~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~ 599 (856)
..+...+.+.|++++|...+....+... ......+..+..++.+.|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455678899999999999999987532 224578899999999999999999999998764
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.038 Score=65.86 Aligned_cols=293 Identities=12% Similarity=0.079 Sum_probs=207.7
Q ss_pred CCCHHHHHHHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 324 SMDAYQANQVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIH 403 (856)
Q Consensus 324 ~~~~~~~~~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~ 403 (856)
......++.++...+..+.|.++-+... .+..|..+..+-.+.|.+.+|.+-|- + ..|+..|.-+|.
T Consensus 1075 ~~n~~A~~VLie~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSyi--k----adDps~y~eVi~ 1141 (1666)
T KOG0985|consen 1075 DMNVSAIQVLIENIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESYI--K----ADDPSNYLEVID 1141 (1666)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHHH--h----cCCcHHHHHHHH
Confidence 3445556667777777888887776654 34589999999999999999988763 2 247888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003028 404 SYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA 483 (856)
Q Consensus 404 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~ 483 (856)
...+.|.+++-.+++...++..-+|.+. ..||-+|++.+++.+.++++ ..||..-...+-+-|...|.++.
T Consensus 1142 ~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~a 1212 (1666)
T KOG0985|consen 1142 VASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEA 1212 (1666)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHH
Confidence 9999999999999998887776666655 46888999999988866654 24788888888888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 484 AHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 484 A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
|.-+|... .-|..|...+...|++..|.+.-++.. +..||-.+-.+|...+.+..| +|..
T Consensus 1213 Akl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCG 1272 (1666)
T KOG0985|consen 1213 AKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICG 1272 (1666)
T ss_pred HHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcC
Confidence 88777654 448888899999999998887665543 456888888888766555433 3443
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003028 564 KNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTY 643 (856)
Q Consensus 564 ~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty 643 (856)
.++.....-..-|+..|-..|-+++...+++.-.... .-....|+.|.--|.+- ++++..+.++..-. ....
T Consensus 1273 L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFws------RvNi 1344 (1666)
T KOG0985|consen 1273 LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWS------RVNI 1344 (1666)
T ss_pred ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH------hcch
Confidence 3444556667788888999999998888887654211 22445566666666654 34444444433322 1222
Q ss_pred HHHHHHHHhcCCcchHHHHHHHH
Q 003028 644 TLLLSCCTEARSPYDMGFCHELM 666 (856)
Q Consensus 644 ~~Ll~a~~~~g~~~~a~~l~~~m 666 (856)
--+|++|.+..-|.++..++..-
T Consensus 1345 pKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1345 PKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666665555443
No 108
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.87 E-value=0.01 Score=67.97 Aligned_cols=167 Identities=21% Similarity=0.247 Sum_probs=82.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 437 IDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNY 516 (856)
Q Consensus 437 l~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~ 516 (856)
+.+......|.+|+.+++.+..... -..-|..+.+.|...|+++.|+++|-+-- .++--|.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3444455666666666666654422 22334555566666666666666664321 234455666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 517 QSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAM 596 (856)
Q Consensus 517 ~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m 596 (856)
++|.++-.+.. |.......|..-..-+-..|++.+|++++-.+. .|+ ..|.+|-+.|..+...++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 66665544332 333334445444444555566666665553221 122 2345555555555555554433
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003028 597 LQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLL 628 (856)
Q Consensus 597 ~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~ 628 (856)
... .-..|...+..-|-..|++..|.+.|
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHH
Confidence 210 01123333444444445555444444
No 109
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0069 Score=62.32 Aligned_cols=234 Identities=12% Similarity=0.171 Sum_probs=133.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHH
Q 003028 408 ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA-AHQ 486 (856)
Q Consensus 408 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~-A~~ 486 (856)
.|.+..++..-...... +-+...-..+-.+|...|.+.... .+.+.. -.|.......+......-+..+. ..+
T Consensus 21 ~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~-~~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEG-KATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred hhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---cccccc-cCChHHHHHHHHHHhhCcchhHHHHHH
Confidence 45555555544433321 133334444455566666544322 222222 13333333333333333333333 233
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003028 487 LFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNW 566 (856)
Q Consensus 487 lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~ 566 (856)
+.+.+......-+......-...|++.|++++|++.++... +......=...+.+..+++-|++.++.|.+..
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 34444443333233333333456778888888888776622 22223333344556677888888888887643
Q ss_pred CCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003028 567 VPDEPVYGLLVDLWGK----AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQT 642 (856)
Q Consensus 567 ~pd~~~y~~Li~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~t 642 (856)
+..+.+-|..+|.+ .+.+..|.-+|++|.++ ..|+..+.|.+..++...|++++|..++++.+... .-+..|
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpet 243 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPET 243 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHH
Confidence 45566656665553 45688899999998864 57888889999999999999999999999888754 334566
Q ss_pred HHHHHHHHHhcCCcch
Q 003028 643 YTLLLSCCTEARSPYD 658 (856)
Q Consensus 643 y~~Ll~a~~~~g~~~~ 658 (856)
...++-+-...|...+
T Consensus 244 L~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHHHHhCCChH
Confidence 6666665555665433
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.81 E-value=0.043 Score=61.67 Aligned_cols=410 Identities=11% Similarity=0.116 Sum_probs=230.1
Q ss_pred CCCHHHHHHHHHhh--hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 324 SMDAYQANQVLKQL--QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRL 401 (856)
Q Consensus 324 ~~~~~~~~~vL~~l--~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~L 401 (856)
.-|...|..+++.+ +.++++.++++.+.... ......|..-|..-.+..+++..+.+|.+.... ..++..|...
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 45788999999877 46789999999998644 345568999999999999999999999998764 3578889888
Q ss_pred HHHHHhc-CCHHH----HHHHHHH-HHHcCCCCCH-HHHHHHHHHH---------HHcCCHHHHHHHHHHHHHCCCCCCH
Q 003028 402 IHSYGRA-NYLNE----ALDVFKQ-MQVVGCEPDR-VTYCTLIDIH---------AKAGFLDVAMDMYKKMQAAGLSPDT 465 (856)
Q Consensus 402 i~~~~~~-g~~~~----A~~lf~~-m~~~g~~pd~-~ty~~Ll~~~---------~k~g~~~~A~~l~~~m~~~g~~pd~ 465 (856)
|..-.+. ++... -.+.|+- |.+.|+.+-. ..|+..+..+ ....+++...++|++++..-+.-=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 8765443 22222 2223332 3344543322 2355554432 3334677778888888764222112
Q ss_pred HHHH------HHHHHH-------HccCCHHHHHHHHHHHHH--cCCCCCHHH---------------HHHHHHHHHHcCC
Q 003028 466 FTYS------VIINCL-------GKAGHLQAAHQLFCEMVN--QGCIPNLVT---------------YNIMIALQAKARN 515 (856)
Q Consensus 466 ~ty~------~Li~~y-------~k~g~~~~A~~lf~~m~~--~g~~pd~~t---------------y~~Li~~~~~~g~ 515 (856)
..|+ .=|+.. -+...+..|.++++++.. .|......+ |-.+|.-=-.++.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 2222 112211 123346667777776653 243332222 3333332211111
Q ss_pred H--------HHHHHHHHH-HHHcCCCCCHH-HHHHHHHHHHh----cCC-------hHHHHHHHHHHHHcCCCCCHhhHH
Q 003028 516 Y--------QSALKLYRD-MQNAGFEPDKV-TYSIVMEVLGH----CGY-------LDEAEAVFAEMRRKNWVPDEPVYG 574 (856)
Q Consensus 516 ~--------~~A~~ll~~-M~~~gi~pd~~-ty~~ll~a~~~----~g~-------~~~A~~l~~~m~~~g~~pd~~~y~ 574 (856)
- ....-.+++ |.-.+..|+.. -|...+..-++ .|+ -+++..+++.....-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 011111221 12223333321 11122222111 111 344444554444322222333344
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 003028 575 LLVDLWGKAG---NVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKP-SLQTYTLLLSCC 650 (856)
Q Consensus 575 ~Li~~~~k~g---~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~P-d~~ty~~Ll~a~ 650 (856)
.+.+---..- ..+....++++++..-..--..+|-.+|..-.+..-++.|..+|.+..+.+..+ +...+.++|.-+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 3333211111 245566666666643222233457778888888888999999999999988777 667777777765
Q ss_pred HhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHHhCCChhH
Q 003028 651 TEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDR--ESKRGLVDAVVDFLHKSGLKEE 728 (856)
Q Consensus 651 ~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~aLi~~y~k~G~~ee 728 (856)
| .++.+-|..+++.-.+.-.+...+....+.- ...-+...-+..+|+.+..... .-...+|+.+++.=..-|++..
T Consensus 413 c-skD~~~AfrIFeLGLkkf~d~p~yv~~Yldf-L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFGDSPEYVLKYLDF-LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcCCChHHHHHHHHH-HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 5 4556788888887666544443333321110 0011234556777777766533 3345789999999999999999
Q ss_pred HHHHHHHHHhC
Q 003028 729 AGSVWEVAAQK 739 (856)
Q Consensus 729 A~~lf~~m~~~ 739 (856)
+.++-+++...
T Consensus 491 i~~lekR~~~a 501 (656)
T KOG1914|consen 491 ILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHh
Confidence 99998887654
No 111
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0061 Score=63.34 Aligned_cols=290 Identities=15% Similarity=0.116 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHH
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTL-IDI 439 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~L-l~~ 439 (856)
.-+.+.+..+.+..++++|.+++....++. +.+......|..+|-...++..|-+.++++-.. .|...-|... ...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 346778888899999999999998888763 237788899999999999999999999999764 4665555433 566
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC--LGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQ 517 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~--y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~ 517 (856)
+.+.+.+..|+.+...|... ++...-..-+.+ ....+++..+..+++++... -+..+.+...-...+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHH
Confidence 77889999999999888653 232222222222 34567888888888887643 25556666666677999999
Q ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-------------CH-------------
Q 003028 518 SALKLYRDMQNA-GFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVP-------------DE------------- 570 (856)
Q Consensus 518 ~A~~ll~~M~~~-gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~p-------------d~------------- 570 (856)
+|.+-|+...+. |..|- ..|+..+.-| +.++++.|.+...++.++|++- |+
T Consensus 162 aAvqkFqaAlqvsGyqpl-lAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPL-LAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHhhcCCCch-hHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 999999987765 55554 5787666544 6789999999999999987642 11
Q ss_pred --hhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 571 --PVYGLLVDLWGKAGNVRKAWEWYEAMLQ-AGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLL 647 (856)
Q Consensus 571 --~~y~~Li~~~~k~g~~~~A~~l~~~m~~-~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll 647 (856)
..+|.-...+-+.++++.|.+.+-.|.- ..-..|++|...+.-.-. .+++-+..+-++-+++..-. ...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-PPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-ChHHHHHHH
Confidence 1122223345567888888888887762 223456676655543322 34455555555556654332 347888888
Q ss_pred HHHHhcCCcchHHHHH
Q 003028 648 SCCTEARSPYDMGFCH 663 (856)
Q Consensus 648 ~a~~~~g~~~~a~~l~ 663 (856)
-.||+..-++-|..++
T Consensus 318 llyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVL 333 (459)
T ss_pred HHHhhhHHHhHHHHHH
Confidence 8888877666555544
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.79 E-value=0.0056 Score=74.49 Aligned_cols=240 Identities=10% Similarity=0.109 Sum_probs=139.7
Q ss_pred HHHHHHHHHhccCCchHHHHHhhcCCCCCH-HHHHHHHHhh---hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003028 298 VESVSRILRQWKWGPLAEEALGNTNYSMDA-YQANQVLKQL---QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRA 373 (856)
Q Consensus 298 ~~~i~~iL~~~~~~~~~~~~l~~~~~~~~~-~~~~~vL~~l---~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~ 373 (856)
.+.+..+|.+-.|... .-.+..|+- ..+..++..+ ++++.|.++.+...+..+-.+.. |-.+...+...
T Consensus 6 ~~~~~~~~~ee~~~r~-----~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~--yy~~G~l~~q~ 78 (906)
T PRK14720 6 IDKLTSLLNEEKWTRA-----DANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA--LYISGILSLSR 78 (906)
T ss_pred HHHHHHHhhhhhhhhc-----ccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh--HHHHHHHHHhh
Confidence 5567777766554321 122344443 4455555544 68999999999766544433333 33333367777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003028 374 RQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMY 453 (856)
Q Consensus 374 g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~ 453 (856)
++.+.+..+ .+ +.......++.-...+.+.|... .-+...+..+..+|-+.|+.+++..+|
T Consensus 79 ~~~~~~~lv--~~---------------l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~y 139 (906)
T PRK14720 79 RPLNDSNLL--NL---------------IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVW 139 (906)
T ss_pred cchhhhhhh--hh---------------hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHH
Confidence 776666555 33 23333333443333444444442 233445666666777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 003028 454 KKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNA---- 529 (856)
Q Consensus 454 ~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~---- 529 (856)
+++++.. +-|..+.|-+...|... ++++|.+++...... |...+++.++.++|.++...
T Consensus 140 er~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d 202 (906)
T PRK14720 140 ERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDD 202 (906)
T ss_pred HHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCccc
Confidence 7776665 34666666676667666 777776666665442 23333333444433333322
Q ss_pred ---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 003028 530 ---------------GFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWG 581 (856)
Q Consensus 530 ---------------gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~ 581 (856)
|..--..++..+-..|-..++++++..+++.+.+.... |.....-|+..|.
T Consensus 203 ~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 203 FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22223445556667788889999999999999986533 5566677777765
No 113
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.76 E-value=0.13 Score=58.10 Aligned_cols=441 Identities=10% Similarity=0.074 Sum_probs=208.5
Q ss_pred hhcCCchHHHHHHHHHhccCCchH--HHHHh-hcCCCCC-HHHHHHHHHh---hhChhHHHHHHHHHHHhCCCCCCHHHH
Q 003028 291 FASTGNVVESVSRILRQWKWGPLA--EEALG-NTNYSMD-AYQANQVLKQ---LQDHTVALGFFNWLRRQAGFKHDEHTY 363 (856)
Q Consensus 291 ~~~~~~~~~~i~~iL~~~~~~~~~--~~~l~-~~~~~~~-~~~~~~vL~~---l~~~~~Al~~f~~m~~~~g~~pd~~~y 363 (856)
.-.+..+++.-..++++....|.. ..... -.+..|. +..|..-++. .++++....+|...... ..+...|
T Consensus 13 ie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk---vLnlDLW 89 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK---VLNLDLW 89 (656)
T ss_pred HhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HhhHhHH
Confidence 334445677777777766544221 11111 1233333 3333333332 26788888889887642 2356688
Q ss_pred HHHHHHHHhc-CCHHH----HHHHHHHH-HHcCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHcCCC
Q 003028 364 TTMVGILGRA-RQFGA----INKLLDQM-VRDGCQP-NVVTYNRLIHS---------YGRANYLNEALDVFKQMQVVGCE 427 (856)
Q Consensus 364 ~~Li~~~~k~-g~~~~----A~~lf~~m-~~~g~~p-d~~ty~~Li~~---------~~~~g~~~~A~~lf~~m~~~g~~ 427 (856)
...|+...+. ++... ..+.|+-. .+.|+.+ .-..|+..|.. |..+.+++...++|+++...-+.
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 8888776554 22222 23334433 3445433 33456666654 34455777888888888753221
Q ss_pred CCHHHHHHHHHH------H-------HHcCCHHHHHHHHHHHHH--CCCCCCHHH---------------HHHHHHHHHc
Q 003028 428 PDRVTYCTLIDI------H-------AKAGFLDVAMDMYKKMQA--AGLSPDTFT---------------YSVIINCLGK 477 (856)
Q Consensus 428 pd~~ty~~Ll~~------~-------~k~g~~~~A~~l~~~m~~--~g~~pd~~t---------------y~~Li~~y~k 477 (856)
-=...|+-...- . -+...+..|..+++++.. .|+.....+ |..+|.- -+
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-Ek 248 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EK 248 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-Hh
Confidence 112334322110 0 122356677777777654 243222221 2222221 11
Q ss_pred cCCHH---------HHHHHHHH-HHHcCCCCCHHHHH-HH----HHHHHHcCC-------HHHHHHHHHHHHHcCCCCCH
Q 003028 478 AGHLQ---------AAHQLFCE-MVNQGCIPNLVTYN-IM----IALQAKARN-------YQSALKLYRDMQNAGFEPDK 535 (856)
Q Consensus 478 ~g~~~---------~A~~lf~~-m~~~g~~pd~~ty~-~L----i~~~~~~g~-------~~~A~~ll~~M~~~gi~pd~ 535 (856)
.+-++ ...-++++ |.--+..|++.-.. .. -+.+...|+ -+++..+++...+.-..-+.
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 11000 01111111 11112222221100 00 112222333 24445555544332222233
Q ss_pred HHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 003028 536 VTYSIVMEVLGHC---GYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRP-NVPTCNSL 611 (856)
Q Consensus 536 ~ty~~ll~a~~~~---g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~p-d~~t~n~L 611 (856)
.+|..+...--.. ...+....+++++......--..+|..+|+..-+..-+..|..+|.+..+.+..+ ++..++++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 3333333211111 1244444555555543222223457777777777777888888888887766656 67777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHH---HHhcCCCCCCc
Q 003028 612 LSAFLRVGQLSDAYHLLQGMLNLGLKPSL-QTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMF---LLSMPSPGPDG 687 (856)
Q Consensus 612 i~ay~~~g~~e~A~~l~~~M~~~g~~Pd~-~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~---~~~l~~~~~~~ 687 (856)
|.-||. ++.+-|.++|+.-++. .+|. .--...++-+...++-..+..+++.....+.+++.. +.+++..-..-
T Consensus 409 mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~v 485 (656)
T KOG1914|consen 409 MEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNV 485 (656)
T ss_pred HHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhc
Confidence 777764 5677788888765542 2333 333455566667777777777887777775543321 11211110000
Q ss_pred ccHHHHHHHHHHHHhc-CC--CCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 003028 688 QNVRDHVGSFLEMMHS-ED--RESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQK 739 (856)
Q Consensus 688 ~~~~~~a~~l~~~~~~-~~--~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~ 739 (856)
+....+..+.+.... .. .++.-..-..+++.|.-.+....-..=++.|-.+
T Consensus 486 -GdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l~~~ 539 (656)
T KOG1914|consen 486 -GDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFLGYK 539 (656)
T ss_pred -ccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhhhHH
Confidence 112222222222111 11 2222234457777887777766666556655443
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.75 E-value=0.004 Score=64.07 Aligned_cols=159 Identities=11% Similarity=0.044 Sum_probs=104.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 364 TTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKA 443 (856)
Q Consensus 364 ~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~ 443 (856)
..+-..+.-.|+-+....+....... ...|....+.++....+.|++.+|+..|++..... ++|..+|+.+--+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44445555566666666655554332 12355556667777777777777777777776654 66777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003028 444 GFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLY 523 (856)
Q Consensus 444 g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll 523 (856)
|+.++|..-|.+..+.- .-+...+|.|.-.|.-.|+++.|..++......+.. |...-..|.......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777777776652 234566666766777777777777777776655332 5556666666777777777777666
Q ss_pred HHH
Q 003028 524 RDM 526 (856)
Q Consensus 524 ~~M 526 (856)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 543
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.013 Score=60.46 Aligned_cols=173 Identities=14% Similarity=0.121 Sum_probs=110.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003028 450 MDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNA 529 (856)
Q Consensus 450 ~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 529 (856)
.++.+.+.......+......-...|+..|++++|++..+... +......=+..+.+..+++-|.+.+++|.+.
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445555544444443444444566888888888888877632 3333333345556777788888888888764
Q ss_pred CCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003028 530 GFEPDKVTYSIVMEVLGHC----GYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNV 605 (856)
Q Consensus 530 gi~pd~~ty~~ll~a~~~~----g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~ 605 (856)
. +..|.+.|..++.+. +.+.+|.-+|++|-+ ...|+..+.+-...++...|++++|..++++..++. ..++
T Consensus 167 d---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dp 241 (299)
T KOG3081|consen 167 D---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDP 241 (299)
T ss_pred c---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCH
Confidence 2 455777676666543 567888888888876 356788888888888888888888888888888654 3345
Q ss_pred HHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 003028 606 PTCNSLLSAFLRVGQLSD-AYHLLQGMLN 633 (856)
Q Consensus 606 ~t~n~Li~ay~~~g~~e~-A~~l~~~M~~ 633 (856)
.+...+|..-...|...+ -.+.+.+...
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 554444444444444333 3344444443
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.68 E-value=0.0059 Score=73.50 Aligned_cols=148 Identities=9% Similarity=0.025 Sum_probs=122.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003028 355 GFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQP-NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTY 433 (856)
Q Consensus 355 g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty 433 (856)
.+..++..+-.|..+....|.+++|+.+++...+. .| +...+..+...+.+.+++++|+..+++..... +-+....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~ 157 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREI 157 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHH
Confidence 35567889999999999999999999999999985 45 45677788899999999999999999998864 4456677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 434 CTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMI 507 (856)
Q Consensus 434 ~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li 507 (856)
+.+..++.+.|++++|..+|+++...+ +-+..++..+-..+-+.|+.++|...|+...+.- .+....|+.++
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 778888899999999999999999843 3458899999999999999999999999987652 23445555443
No 117
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.65 E-value=0.26 Score=58.72 Aligned_cols=221 Identities=12% Similarity=0.095 Sum_probs=97.2
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVF 418 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf 418 (856)
++..|+.-...+.++++..+-..++.+++ +.+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++|..+|
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34455555555555443332222222222 23555666666555555443322 5555666666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------CHHHHHHHH
Q 003028 419 KQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG----------HLQAAHQLF 488 (856)
Q Consensus 419 ~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g----------~~~~A~~lf 488 (856)
++.... -|+..-...+..+|.+.+.+.+-.+.--+|.+. ++-+.+.+=+++..+...- -+.-|.+.+
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 665533 344555555555555555544433333333221 2223333333333332211 122344444
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003028 489 CEMVNQG-CIPNLVTYNIMIALQAKARNYQSALKLYR-DMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN 565 (856)
Q Consensus 489 ~~m~~~g-~~pd~~ty~~Li~~~~~~g~~~~A~~ll~-~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g 565 (856)
+.+.+.+ ..-+..-...-...+-..|++++|++++. ..-+.-..-+...-+.-++.+...+++.+..++-.++...+
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 4444432 11111111112223334555666666553 22222222222233344444555555555555555555544
No 118
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.01 Score=67.15 Aligned_cols=221 Identities=12% Similarity=0.102 Sum_probs=125.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 369 ILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDV 448 (856)
Q Consensus 369 ~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~ 448 (856)
-+.+.|++.+|.-+|+..++.. +-+...|-.|-.....+++-..|+..+++..+.. +-+....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3456777777777777776652 2356677777777777777777777777776653 3455666666667777777777
Q ss_pred HHHHHHHHHHCCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 449 AMDMYKKMQAAGLS--------PDTFTYSVIINCLGKAGHLQAAHQLFCEMVN-QGCIPNLVTYNIMIALQAKARNYQSA 519 (856)
Q Consensus 449 A~~l~~~m~~~g~~--------pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~-~g~~pd~~ty~~Li~~~~~~g~~~~A 519 (856)
|+++++.-+....+ ++...-+. ..+.....+....++|-++.. .+..+|...+..|--.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 77777666543210 00000000 112222233444444444432 33335566666666666666677777
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 520 LKLYRDMQNAGFEP-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPD-EPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 520 ~~ll~~M~~~gi~p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd-~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
.+.|+..+.. .| |..+||-|-..++...+.++|...|.+.++.. |. +.+...|.-.|...|.+++|.+.|-..+
T Consensus 450 iDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777666553 33 34566666666666666666666666666532 22 2222333444566666666666554443
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.65 E-value=0.0058 Score=62.25 Aligned_cols=120 Identities=9% Similarity=0.134 Sum_probs=82.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCC--HHHH
Q 003028 408 ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC-LGKAGH--LQAA 484 (856)
Q Consensus 408 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~-y~k~g~--~~~A 484 (856)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.. +-+...+..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 555666766676666554 5667777777777777788888888777777753 3356666666665 356565 4777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003028 485 HQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG 530 (856)
Q Consensus 485 ~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g 530 (856)
.+++++..+.... +...+..+...+.+.|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777777766433 66677777777777777777777777776653
No 120
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.04 Score=61.96 Aligned_cols=330 Identities=12% Similarity=0.066 Sum_probs=200.2
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN-VVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd-~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
++++.|...|-..... -++|.+.|..-..+|.+.|++++|.+=-.+-.+ +.|+ ..-|+.+-.++.-.|++++|+.
T Consensus 16 ~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 6889999999887642 234777899999999999999998776655554 3455 4578888888888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHH----------ccCC
Q 003028 417 VFKQMQVVGCEPDRVTYCTLIDIHAKAG---FLDVAMDMYKKMQAA---GLSPDTFTYSVIINCLG----------KAGH 480 (856)
Q Consensus 417 lf~~m~~~g~~pd~~ty~~Ll~~~~k~g---~~~~A~~l~~~m~~~---g~~pd~~ty~~Li~~y~----------k~g~ 480 (856)
.|.+-.+.. +.+...++-+..++.... +.-.--.++..+... ........|..++..+- .-.+
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 999887764 556677777777772110 000001111111110 00011122333332221 1111
Q ss_pred HHHHHHHHHHH-----HHcC-------CCC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 481 LQAAHQLFCEM-----VNQG-------CIP----------------------NLVTYNIMIALQAKARNYQSALKLYRDM 526 (856)
Q Consensus 481 ~~~A~~lf~~m-----~~~g-------~~p----------------------d~~ty~~Li~~~~~~g~~~~A~~ll~~M 526 (856)
+..|.-.+... ...+ ..| -..-+..+..+..+..+++.|++-+...
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 11121111110 0000 011 0112445667777888888888888887
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH-------HHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 527 QNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGL-------LVDLWGKAGNVRKAWEWYEAMLQA 599 (856)
Q Consensus 527 ~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~-------Li~~~~k~g~~~~A~~l~~~m~~~ 599 (856)
.+.. -+..-++....+|...|.+.+.........+.|.. ...-|+. +-.+|.+.++++.|..+|++....
T Consensus 251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte 327 (539)
T KOG0548|consen 251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE 327 (539)
T ss_pred HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence 7654 34445556666788888877777766665555432 1122222 334666678888888888876654
Q ss_pred CCCCCHHH-------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003028 600 GLRPNVPT-------------------------CNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEAR 654 (856)
Q Consensus 600 g~~pd~~t-------------------------~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g 654 (856)
...|+... -..-...+.+.|++..|+..|.+++... .-|...|..---+|.+.+
T Consensus 328 ~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~ 406 (539)
T KOG0548|consen 328 HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLG 406 (539)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHh
Confidence 33333221 1112455678999999999999999865 445577888878889999
Q ss_pred CcchHHHHHHHHHHcCCChHHH
Q 003028 655 SPYDMGFCHELMAVSGHPAHMF 676 (856)
Q Consensus 655 ~~~~a~~l~~~m~~~g~~~~~~ 676 (856)
.+..+..-.+.-.+..++....
T Consensus 407 ~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 407 EYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred hHHHHHHHHHHHHhcCchHHHH
Confidence 9888887777777766654433
No 121
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.63 E-value=8.7e-05 Score=52.07 Aligned_cols=33 Identities=30% Similarity=0.671 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003028 607 TCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS 639 (856)
Q Consensus 607 t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd 639 (856)
+||.||.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
No 122
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.0058 Score=69.02 Aligned_cols=215 Identities=15% Similarity=0.074 Sum_probs=161.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQS 518 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 518 (856)
-+.+.|++.+|.-.|+..+... +-+...|.-|-..-...++-..|+.-+.+..+.... |....-+|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3568899999999999988874 347788888888888888888899888888876433 67788888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH-----------HHHhcCChHHHHHHHHHHH-HcCCCCCHhhHHHHHHHHHhcCCH
Q 003028 519 ALKLYRDMQNAGFEPDKVTYSIVME-----------VLGHCGYLDEAEAVFAEMR-RKNWVPDEPVYGLLVDLWGKAGNV 586 (856)
Q Consensus 519 A~~ll~~M~~~gi~pd~~ty~~ll~-----------a~~~~g~~~~A~~l~~~m~-~~g~~pd~~~y~~Li~~~~k~g~~ 586 (856)
|+++|+.-.....+ |..+.. .+.....+....++|-++. ..+..+|..++..|--.|--.|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999988765321 111211 1111122344455555544 445557888899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcchHHHHH
Q 003028 587 RKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQ-TYTLLLSCCTEARSPYDMGFCH 663 (856)
Q Consensus 587 ~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~-ty~~Ll~a~~~~g~~~~a~~l~ 663 (856)
++|...|+..+... +-|..+||.|...++...+.++|+..|++.++ ++|+.+ ...-|--+|...|.+++|...+
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999998742 44678999999999999999999999999997 788863 3344444678888887776543
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.62 E-value=0.0076 Score=61.37 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=65.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH-HHhcCC--HHHH
Q 003028 513 ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDL-WGKAGN--VRKA 589 (856)
Q Consensus 513 ~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~-~~k~g~--~~~A 589 (856)
.++.++++..++...... +.|...|..+...|...|++++|...|+...+... -+...+..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555444432 23445555555566666666666666666555432 244555555554 244454 3666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 590 WEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 590 ~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.+++++..+.. +-+...+..+...+.+.|++++|+..|+++++
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666542 23555666666666666666666666666665
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.61 E-value=0.018 Score=69.39 Aligned_cols=148 Identities=9% Similarity=-0.009 Sum_probs=107.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003028 391 CQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSV 470 (856)
Q Consensus 391 ~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~ 470 (856)
...++..+-.|.....+.|.+++|+.+++...+.. +-+......+...+.+.+++++|+..+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 34467778888888888888888888888887653 3345566777788888888888888888888763 335666677
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 471 IINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVM 542 (856)
Q Consensus 471 Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll 542 (856)
+..++.+.|++++|..+|+++...+. -+..++..+...+...|+.++|...|+...+.. .+....|+..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 77788888888888888888886322 246778888888888888888888888876642 23344454443
No 125
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.57 E-value=0.31 Score=57.27 Aligned_cols=375 Identities=13% Similarity=0.043 Sum_probs=239.5
Q ss_pred CCHHHHHHH---HHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 325 MDAYQANQV---LKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRL 401 (856)
Q Consensus 325 ~~~~~~~~v---L~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~L 401 (856)
-+...+..+ +...+++..+-+.|+.... +.--....|+.+--.|..+|.-..|..+++.-....-.|+..+--.+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 344444443 3455788888888988763 33345667888988999999988899988876653222433333223
Q ss_pred H-HHH-HhcCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCC-CC
Q 003028 402 I-HSY-GRANYLNEALDVFKQMQVV--GC--EPDRVTYCTLIDIHAKA-----------GFLDVAMDMYKKMQAAGL-SP 463 (856)
Q Consensus 402 i-~~~-~~~g~~~~A~~lf~~m~~~--g~--~pd~~ty~~Ll~~~~k~-----------g~~~~A~~l~~~m~~~g~-~p 463 (856)
+ ..| -+-+.+++++++..+.... +. ......|..+--+|... ....++++.+++..+.+. .|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 3 323 3446778888877776551 11 12234444444444322 235678888888877643 33
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC----------
Q 003028 464 DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQN-AGFE---------- 532 (856)
Q Consensus 464 d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~-~gi~---------- 532 (856)
++..| +---|+..++++.|.+...+..+.+-.-+...|..|.-.+.-.+++.+|+.+.+...+ .|..
T Consensus 479 ~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 33333 3334677788899998888888876566888888888888888888888888875543 2210
Q ss_pred --------CCHHHHHHHHHHHHh---------c--------------CChHHHHHHHHHH----H----HcC--------
Q 003028 533 --------PDKVTYSIVMEVLGH---------C--------------GYLDEAEAVFAEM----R----RKN-------- 565 (856)
Q Consensus 533 --------pd~~ty~~ll~a~~~---------~--------------g~~~~A~~l~~~m----~----~~g-------- 565 (856)
--..|...++..+-. . ++..++......+ . ..+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 001222222222220 0 0111111111111 0 001
Q ss_pred -CC--CC------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003028 566 -WV--PD------EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGL 636 (856)
Q Consensus 566 -~~--pd------~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~ 636 (856)
.. |+ ...|....+.+.+.+..++|...+.+.... .+.....|......+...|+.++|.+.|...+. +
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--l 713 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--L 713 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--c
Confidence 11 22 335667778889999999999888877654 345667788888888999999999999999886 6
Q ss_pred CCCH-HHHHHHHHHHHhcCCcchHHH--HHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCC
Q 003028 637 KPSL-QTYTLLLSCCTEARSPYDMGF--CHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDR 706 (856)
Q Consensus 637 ~Pd~-~ty~~Ll~a~~~~g~~~~a~~--l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~ 706 (856)
.|+. ...+++-..+.+.|+..-+.. ++..+.+.++..|..++.++......++..+++..+.-.++....
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 6776 566777778889998877777 899999999999999988877666556666666655555554433
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.56 E-value=0.00011 Score=51.57 Aligned_cols=33 Identities=48% Similarity=0.744 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD 429 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd 429 (856)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455666666666666666666666655555554
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.56 E-value=0.011 Score=60.80 Aligned_cols=153 Identities=12% Similarity=0.055 Sum_probs=65.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003028 472 INCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYL 551 (856)
Q Consensus 472 i~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~ 551 (856)
-..+...|+-+....+........ ..|....+.++....+.|++.+|+..|++..... ++|..+|+.+--+|-+.|+.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccCh
Confidence 334444444444444443332211 1133333334444444555555555554444321 33444444444445555555
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003028 552 DEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLL 628 (856)
Q Consensus 552 ~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~ 628 (856)
++|..-|.+..+-.. -+...+|.|.-.|.-.|+.+.|..++......+ .-|...-..+.......|++++|..+-
T Consensus 151 ~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 151 DEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 555554444444321 123334444444444455555555544444332 113333444444444455555554443
No 128
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.53 E-value=0.18 Score=53.75 Aligned_cols=349 Identities=13% Similarity=0.068 Sum_probs=215.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLI---HSYGRANYLNEALDVFKQMQVVGCEPDRVTYC-TLID 438 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li---~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~-~Ll~ 438 (856)
.--+-..+...|++..|+.-|...++ .|+..|.++. ..|...|+-.-|+.=|.+..+. +||-..-. ---.
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 33445555556666666666655554 2333344333 3445555555555555555442 44432211 1123
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC--C----------H--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSP--D----------T--FTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYN 504 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~p--d----------~--~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~ 504 (856)
.+.+.|.++.|..=|+.++.....- . . ......+..+.-.|+...|...+..+.+..+ -|...|.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHH
Confidence 4456666666666666665542110 0 1 1122345567778999999999999987533 2777788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh----hHHHH----
Q 003028 505 IMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEP----VYGLL---- 576 (856)
Q Consensus 505 ~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~----~y~~L---- 576 (856)
.-..+|...|+...|+.=++...+.. .-+..++--+-..+...|+.+.++....+..+.+ ||-. .|..|
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHH
Confidence 88899999999999988777665543 2345566667777888999999999888888643 4432 22222
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 003028 577 -----VDLWGKAGNVRKAWEWYEAMLQAGLRPN-----VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS-LQTYTL 645 (856)
Q Consensus 577 -----i~~~~k~g~~~~A~~l~~~m~~~g~~pd-----~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd-~~ty~~ 645 (856)
+......+++.++.+-.+...+.. |. ...+..+-.+|...|++-+|++...+.++ +.|| ..++.-
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~d 346 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcC--CcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHH
Confidence 122345567777777777776643 33 23345667788889999999999999987 5666 677777
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCC
Q 003028 646 LLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGL 725 (856)
Q Consensus 646 Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~ 725 (856)
-..+|.-...+++|+.-++...+.+......- ...+.+.++.+..... .-|..|+ --+.-.
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r-----------eGle~Akrlkkqs~kR------DYYKILG--VkRnAs 407 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELNESNTRAR-----------EGLERAKRLKKQSGKR------DYYKILG--VKRNAS 407 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH-----------HHHHHHHHHHHHhccc------hHHHHhh--hccccc
Confidence 77788777888888888887777665433221 2345555555444322 2233332 234555
Q ss_pred hhHHHHHHHHHHhCCCCCCc
Q 003028 726 KEEAGSVWEVAAQKNVYPDA 745 (856)
Q Consensus 726 ~eeA~~lf~~m~~~~~~Pd~ 745 (856)
..|-.+.+++|.++ ..||.
T Consensus 408 KqEI~KAYRKlAqk-WHPDN 426 (504)
T KOG0624|consen 408 KQEITKAYRKLAQK-WHPDN 426 (504)
T ss_pred HHHHHHHHHHHHHh-cCCcc
Confidence 67788888888776 44654
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.53 E-value=0.0063 Score=58.58 Aligned_cols=91 Identities=11% Similarity=-0.005 Sum_probs=40.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 003028 401 LIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH 480 (856)
Q Consensus 401 Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~ 480 (856)
+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|...|+...... +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3344444444444444444444332 2234444444444444444444444444444432 2234444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 003028 481 LQAAHQLFCEMVN 493 (856)
Q Consensus 481 ~~~A~~lf~~m~~ 493 (856)
+++|...|+....
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.50 E-value=0.056 Score=60.35 Aligned_cols=141 Identities=16% Similarity=0.112 Sum_probs=99.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 003028 472 INCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD-KVTYSIVMEVLGHCGY 550 (856)
Q Consensus 472 i~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~~~g~ 550 (856)
.-.+...|++++|++.++.+...- +-|..-+......+.+.++..+|.+.++.+... .|+ ......+.+++.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCC
Confidence 334556677788888888777642 224555556667778888888888888887765 344 4455566777788888
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 551 LDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQG 630 (856)
Q Consensus 551 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~ 630 (856)
..+|..+++...... +-|+..|..|..+|...|+..+|..-..+.. ...|+++.|+..+..
T Consensus 390 ~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~------------------~~~G~~~~A~~~l~~ 450 (484)
T COG4783 390 PQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY------------------ALAGRLEQAIIFLMR 450 (484)
T ss_pred hHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH------------------HhCCCHHHHHHHHHH
Confidence 888888887777643 4577788888888888888888877776663 457778888887777
Q ss_pred HHHC
Q 003028 631 MLNL 634 (856)
Q Consensus 631 M~~~ 634 (856)
..+.
T Consensus 451 A~~~ 454 (484)
T COG4783 451 ASQQ 454 (484)
T ss_pred HHHh
Confidence 7663
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.46 E-value=0.0048 Score=69.02 Aligned_cols=125 Identities=11% Similarity=0.123 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003028 396 VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCL 475 (856)
Q Consensus 396 ~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y 475 (856)
..-..|+..+...++++.|.++|+++.+.. |+ ....++..+...++..+|.+++.+.+.. .+-+......-...|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 344556666667777888888888877653 44 3344667777777777888887777754 334566666666777
Q ss_pred HccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 476 GKAGHLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQ 527 (856)
Q Consensus 476 ~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 527 (856)
.+.++.+.|.++.+++.+. .| +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7888888888888888765 34 44588888888888888888887777664
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.46 E-value=0.43 Score=56.98 Aligned_cols=106 Identities=18% Similarity=0.277 Sum_probs=52.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 372 RARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSY--GRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVA 449 (856)
Q Consensus 372 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~--~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A 449 (856)
..+++..|....+.+.++ .|+.. |...+.++ .+.|+.++|..+++.....+.. |..|..++-..|...+++++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 345555555555555543 23332 22223222 3455555555555555443322 555555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003028 450 MDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA 483 (856)
Q Consensus 450 ~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~ 483 (856)
..+|+..... .|+......+..+|.+.+.+.+
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 5555555443 3445555555555555554443
No 133
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.45 E-value=0.00018 Score=50.33 Aligned_cols=33 Identities=36% Similarity=0.532 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003028 606 PTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKP 638 (856)
Q Consensus 606 ~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~P 638 (856)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466667777777777777777777776666665
No 134
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.43 E-value=0.0018 Score=72.74 Aligned_cols=124 Identities=21% Similarity=0.173 Sum_probs=101.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003028 530 GFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK--NWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPT 607 (856)
Q Consensus 530 gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~--g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t 607 (856)
+...+......+++.+....++++++.++...+.. ....-..|..++|+.|.+.|..+.+..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556777788888888888888888888888765 2223345567899999999999999999988888899999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003028 608 CNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEA 653 (856)
Q Consensus 608 ~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~ 653 (856)
+|.||+.|.+.|++..|.++..+|..++...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888888888888888888887766
No 135
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.43 E-value=0.0036 Score=60.30 Aligned_cols=103 Identities=11% Similarity=-0.022 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 538 YSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR 617 (856)
Q Consensus 538 y~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~ 617 (856)
+..+...+...|++++|...|....... ..+...|..+..++.+.|++++|...|+...... +.+...|..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3445566677778888887777777654 3366777777777778888888888888877642 4467777777788888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003028 618 VGQLSDAYHLLQGMLNLGLKPSLQTYT 644 (856)
Q Consensus 618 ~g~~e~A~~l~~~M~~~g~~Pd~~ty~ 644 (856)
.|++++|+..|+..++ +.|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~--~~p~~~~~~ 129 (144)
T PRK15359 105 MGEPGLAREAFQTAIK--MSYADASWS 129 (144)
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHH
Confidence 8888888888888776 456654444
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.42 E-value=0.00022 Score=49.90 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 003028 711 GLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYP 743 (856)
Q Consensus 711 ~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~~P 743 (856)
.+||+++++|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 479999999999999999999999999999987
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.38 E-value=0.0061 Score=57.52 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 537 TYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFL 616 (856)
Q Consensus 537 ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~ 616 (856)
....+...+...|++++|...|+.+...+ ..+...+..+...|.+.|++++|..+|+...+.. +.+...|..+...|.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 34455566667777777777777776644 3356677777777777788888888887776643 445667777777788
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003028 617 RVGQLSDAYHLLQGMLNLGLKPSLQTYTLL 646 (856)
Q Consensus 617 ~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~L 646 (856)
..|++++|+..|+..++ +.|+...+..+
T Consensus 97 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 124 (135)
T TIGR02552 97 ALGEPESALKALDLAIE--ICGENPEYSEL 124 (135)
T ss_pred HcCCHHHHHHHHHHHHH--hccccchHHHH
Confidence 88888888888877776 34555554433
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.37 E-value=0.058 Score=60.25 Aligned_cols=218 Identities=17% Similarity=0.081 Sum_probs=130.3
Q ss_pred HHHhcC-CHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHc
Q 003028 404 SYGRAN-YLNEALDVFKQMQV---VGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAG--LSPDTFTYSVIINCLGK 477 (856)
Q Consensus 404 ~~~~~g-~~~~A~~lf~~m~~---~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g--~~pd~~ty~~Li~~y~k 477 (856)
.+.+.| +.....++|+++.. .+-.|.....+ -=.-..++..+...-+.|.... -.|+...+...+.....
T Consensus 211 ~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~T----HPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~ 286 (484)
T COG4783 211 TLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLT----HPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYE 286 (484)
T ss_pred HHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhc----CCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhc
Confidence 334445 34555566776652 33233322111 1112234444554555554321 23555555555555444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 003028 478 AGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD-KVTYSIVMEVLGHCGYLDEAEA 556 (856)
Q Consensus 478 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~~~g~~~~A~~ 556 (856)
...-..+..++.+..+ +--...+--..-.+...|++++|+..++.+... .|+ ........+.+...++..+|.+
T Consensus 287 ~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e 361 (484)
T COG4783 287 ALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIE 361 (484)
T ss_pred cccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 4433333333333332 112233333444556778888888888887765 344 4444555667788888888888
Q ss_pred HHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 557 VFAEMRRKNWVPD-EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 557 l~~~m~~~g~~pd-~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.++.+.... |+ ....-.+.++|.+.|++.+|..+++..... .+-|...|..|..+|...|+..+|..-.-++..
T Consensus 362 ~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 362 RLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 888887643 44 556667778888888888888888887754 366788888888888888888888777666553
No 139
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.36 E-value=0.3 Score=58.79 Aligned_cols=383 Identities=13% Similarity=0.056 Sum_probs=212.3
Q ss_pred ChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHD-EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDV 417 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd-~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 417 (856)
+...|+..|-...+ ..++ ...|..|.+.|+...+...|.+.|+...+.. .-+...+..+...|++..+++.|..+
T Consensus 473 ~~~~al~ali~alr---ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALR---LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHh---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 44455555544433 2233 3579999999999989999999999887642 23667888899999999999999998
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 003028 418 FKQMQVVG-CEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC 496 (856)
Q Consensus 418 f~~m~~~g-~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~ 496 (856)
.-..-+.. ...-...|...--.|.+.++...|..-|+...+.. +-|...|..+..+|..+|++..|.++|.+....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 43322211 00111223334445678889999999999888764 347889999999999999999999999887764
Q ss_pred CCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH-------
Q 003028 497 IPNLVTYNI--MIALQAKARNYQSALKLYRDMQNA------GFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEM------- 561 (856)
Q Consensus 497 ~pd~~ty~~--Li~~~~~~g~~~~A~~ll~~M~~~------gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m------- 561 (856)
.|+ .+|.. ..-..+..|.+.+|+..+...... +..--..++..+...+...|-...+..+++.-
T Consensus 626 rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 626 RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 232 23332 233456788898888888766432 11111223333333333333333333333322
Q ss_pred HHcCCCCCHhhHHHHHH-------------------HHH----hcCCH---H---HHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 562 RRKNWVPDEPVYGLLVD-------------------LWG----KAGNV---R---KAWEWYEAMLQAGLRPNVPTCNSLL 612 (856)
Q Consensus 562 ~~~g~~pd~~~y~~Li~-------------------~~~----k~g~~---~---~A~~l~~~m~~~g~~pd~~t~n~Li 612 (856)
.......+...|-.+-+ .+. +.+.. | -+.+.+-. ...+.-+..+|-.|+
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLG 782 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLG 782 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHh
Confidence 21111111111111111 111 11111 1 00000000 000112234454454
Q ss_pred HHHHH----c----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCC
Q 003028 613 SAFLR----V----GQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPG 684 (856)
Q Consensus 613 ~ay~~----~----g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~ 684 (856)
..|.+ . .+...|+..+.+.++ +.-|...|...|......|.+.-+..++-.-....+..+..+..++..+
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeE
Confidence 44433 1 223456777777665 3444455555555555556666555555555555566666666655544
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHH
Q 003028 685 PDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEV 735 (856)
Q Consensus 685 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~ 735 (856)
... +..+.+...+.+....++. +..-|--..-..-..|+.-++..+|..
T Consensus 861 l~n-~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 861 LEN-QDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred Eec-ccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 433 4567777778777766543 222222222223346777777777765
No 140
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.34 E-value=0.0031 Score=70.88 Aligned_cols=121 Identities=18% Similarity=0.216 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003028 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVV--GCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSV 470 (856)
Q Consensus 393 pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~--g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~ 470 (856)
.+......+++.+....+++++.+++.+.+.. ....-..|..+++..|.+.|..+.++.++..=..-|+-||.+++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34555555566555556666666666666543 1112233445666666666666666666666666666666666666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 471 IINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKA 513 (856)
Q Consensus 471 Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~ 513 (856)
||+.+.+.|++..|.+++..|..++...+..|+..-+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666666555544555555444444443
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.32 E-value=0.0057 Score=68.45 Aligned_cols=127 Identities=15% Similarity=0.148 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIH 440 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~ 440 (856)
+.-..|+..+...++++.|..+|+++.+.. |++ ...|++.+...++-.+|.+++++..... +.|...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344556777778899999999999999863 554 4457888888999999999999998653 55777777778889
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003028 441 AKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 441 ~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~ 493 (856)
.+.++++.|+++.+++... .+-+-.+|..|..+|.+.|+++.|+-.+..+.-
T Consensus 245 l~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999999986 233456999999999999999999999987763
No 142
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.29 E-value=0.01 Score=55.98 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=34.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 003028 403 HSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQ 482 (856)
Q Consensus 403 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~ 482 (856)
..+.+.|++++|.+.|+.+...+ +.+...|..+...+.+.|++++|..+++...+.+ +.+...+..+...|...|+++
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHH
Confidence 33334444444444444433322 2233333334444444444444444444433331 222333333333444444444
Q ss_pred HHHHHHHHHH
Q 003028 483 AAHQLFCEMV 492 (856)
Q Consensus 483 ~A~~lf~~m~ 492 (856)
+|.+.|+...
T Consensus 103 ~A~~~~~~al 112 (135)
T TIGR02552 103 SALKALDLAI 112 (135)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 143
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.18 Score=56.92 Aligned_cols=322 Identities=13% Similarity=0.122 Sum_probs=185.3
Q ss_pred hhChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHD-EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd-~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 415 (856)
++++..|++=-..-. .+.|+ ...|+-...++.-.|++++|..-|.+-.+.. +-|...++-|..++.-. ..+.
T Consensus 49 ~~~~~~al~da~k~~---~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~ 121 (539)
T KOG0548|consen 49 LGSYEKALKDATKTR---RLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED---YAAD 121 (539)
T ss_pred HhhHHHHHHHHHHHH---hcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH---HHhh
Confidence 356666665433333 35565 4578888899999999999999999888752 23566777777777111 1112
Q ss_pred HHHHH----HHHcCC-----CCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHH--------CC-------CCC-
Q 003028 416 DVFKQ----MQVVGC-----EPDRVTYCTLIDIHAKA-------GFLDVAMDMYKKMQA--------AG-------LSP- 463 (856)
Q Consensus 416 ~lf~~----m~~~g~-----~pd~~ty~~Ll~~~~k~-------g~~~~A~~l~~~m~~--------~g-------~~p- 463 (856)
+.|.. +...+. ......|..++..+-+. .+.+...+..-.+.. .| ..|
T Consensus 122 ~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~ 201 (539)
T KOG0548|consen 122 QLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC 201 (539)
T ss_pred hhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc
Confidence 22211 000010 00112233333332211 011111111111111 11 111
Q ss_pred -----------C----------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 464 -----------D----------TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKL 522 (856)
Q Consensus 464 -----------d----------~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 522 (856)
| ..-...+.++..+..+++.|.+-++...+.. -++.-++....+|...|.+.++...
T Consensus 202 ~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~ 279 (539)
T KOG0548|consen 202 KQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIEL 279 (539)
T ss_pred cccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcc
Confidence 0 1123446677777888888888888877753 3555566777888888888877776
Q ss_pred HHHHHHcCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH----------------------
Q 003028 523 YRDMQNAGFEPDKVTYSIV-------MEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVY---------------------- 573 (856)
Q Consensus 523 l~~M~~~gi~pd~~ty~~l-------l~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y---------------------- 573 (856)
-....+.|.. ...-|+.| -.+|.+.++++.+...|.+.......|+...-
T Consensus 280 c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A 358 (539)
T KOG0548|consen 280 CEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKA 358 (539)
T ss_pred hHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHH
Confidence 6665554422 11223322 33555667788888888776654333332111
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 003028 574 ---GLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL-QTYTLLLSC 649 (856)
Q Consensus 574 ---~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~-~ty~~Ll~a 649 (856)
..-...+.+.|++..|...|.+++... +-|...|....-+|.+.|.+..|+.=.+..++. .|+. ..|.-=..+
T Consensus 359 ~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~a 435 (539)
T KOG0548|consen 359 EEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAA 435 (539)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHH
Confidence 111345678899999999999999875 668899999999999999999999988887763 4543 223222223
Q ss_pred HHhcCCcchHHHHHHHHHHcCC
Q 003028 650 CTEARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 650 ~~~~g~~~~a~~l~~~m~~~g~ 671 (856)
+....+++.+...+++-.+..+
T Consensus 436 l~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 436 LRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc
Confidence 3334445555555554444443
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.23 Score=51.12 Aligned_cols=186 Identities=11% Similarity=0.042 Sum_probs=100.3
Q ss_pred ChhHHHHHHHHHHH--hCC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003028 339 DHTVALGFFNWLRR--QAG-FKHDEH-TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEA 414 (856)
Q Consensus 339 ~~~~Al~~f~~m~~--~~g-~~pd~~-~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A 414 (856)
+.++.++++..+.. ..| ..++.. .|..++-+...+|+.+.|...++.+..+ ++-+...-..-...+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhH
Confidence 34455555555542 123 444433 3455555666777777777777777654 221211111111122345677777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 415 ~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
+++++.+.+.. +-|.++|--=+...-..|+--+|++-+.+..+. +..|...|.-|...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 77777776654 555566655555555566666666666666554 4556677777777777777777777666666643
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 003028 495 GCIPNLVTYNIMIALQAKAR---NYQSALKLYRDMQN 528 (856)
Q Consensus 495 g~~pd~~ty~~Li~~~~~~g---~~~~A~~ll~~M~~ 528 (856)
. +.+...+..+...+.-.| +..-+.++|.+..+
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 113333333443333322 33445555555544
No 145
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.13 E-value=0.0052 Score=55.15 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHcCCCCCHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGC-QPNVVTYNRLIHSYGRANY--------LNEALDVFKQMQVVGCEPDRVTY 433 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~-~pd~~ty~~Li~~~~~~g~--------~~~A~~lf~~m~~~g~~pd~~ty 433 (856)
....|.-+...+++.....+|+.+++.|+ -|++.+|+.++.+.++... +-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 33455556666888888888888888888 7888888888877766532 33455666666666666666666
Q ss_pred HHHHHHHHH
Q 003028 434 CTLIDIHAK 442 (856)
Q Consensus 434 ~~Ll~~~~k 442 (856)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 666665543
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.13 E-value=0.00048 Score=46.95 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 003028 712 LVDAVVDFLHKSGLKEEAGSVWEVAAQKNV 741 (856)
Q Consensus 712 ~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~ 741 (856)
+||++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 699999999999999999999999998874
No 147
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.10 E-value=0.0074 Score=60.70 Aligned_cols=106 Identities=20% Similarity=0.364 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003028 356 FKHDEHTYTTMVGILGRA-----RQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDR 430 (856)
Q Consensus 356 ~~pd~~~y~~Li~~~~k~-----g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~ 430 (856)
-..|-.+|..+|+.|.+. |.++-....+..|.+-|+..|..+|+.||+.+=+..-. -..+|+.+-
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fv--p~n~fQ~~F-------- 112 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFV--PRNFFQAEF-------- 112 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcc--cccHHHHHh--------
Confidence 345677777777777644 56666677777777777777777777777765442211 111121111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 003028 431 VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH 480 (856)
Q Consensus 431 ~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~ 480 (856)
.- .-.+.+-|++++++|...|+-||..++..|++.|++.+.
T Consensus 113 -------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 -------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 00 112456677777777777777777777777777777664
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.10 E-value=0.00048 Score=46.91 Aligned_cols=29 Identities=34% Similarity=0.618 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003028 607 TCNSLLSAFLRVGQLSDAYHLLQGMLNLG 635 (856)
Q Consensus 607 t~n~Li~ay~~~g~~e~A~~l~~~M~~~g 635 (856)
+||.||.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.07 E-value=0.0071 Score=54.31 Aligned_cols=42 Identities=14% Similarity=0.328 Sum_probs=22.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHc
Q 003028 436 LIDIHAKAGFLDVAMDMYKKMQAAGL-SPDTFTYSVIINCLGK 477 (856)
Q Consensus 436 Ll~~~~k~g~~~~A~~l~~~m~~~g~-~pd~~ty~~Li~~y~k 477 (856)
.|.-|...+++.....+|+.+++.|+ .|+..+|+.++.+.++
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 34444444555555555555555555 5555555555555444
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.05 E-value=0.028 Score=54.02 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=9.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~ 459 (856)
..+...|++++|...|+.+...
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh
Confidence 3344444444444444444443
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.087 Score=54.14 Aligned_cols=160 Identities=16% Similarity=0.177 Sum_probs=98.0
Q ss_pred cCCHHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCh
Q 003028 478 AGHLQAAHQLFCEMVNQ---G-CIPNLV-TYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVME-VLGHCGYL 551 (856)
Q Consensus 478 ~g~~~~A~~lf~~m~~~---g-~~pd~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~-a~~~~g~~ 551 (856)
..+.++..+++.+|... | ..++.. .|..++-+....|+.+.|...++++...- |...-...|-. -+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 34577777777777642 3 333433 34445566667777777777777776653 33221111111 12345777
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 552 DEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGM 631 (856)
Q Consensus 552 ~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M 631 (856)
++|+++++.+.+.+ +.|..+|--=+-+.-..|+--+|.+-+.+..+. +.-|...|..+...|...|++++|.-.+++|
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 77777777777654 445566665555555666666777666666654 4567777777777777777777777777777
Q ss_pred HHCCCCCCHHHH
Q 003028 632 LNLGLKPSLQTY 643 (856)
Q Consensus 632 ~~~g~~Pd~~ty 643 (856)
+- +.|-...|
T Consensus 181 ll--~~P~n~l~ 190 (289)
T KOG3060|consen 181 LL--IQPFNPLY 190 (289)
T ss_pred HH--cCCCcHHH
Confidence 75 45544433
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.02 E-value=0.022 Score=54.74 Aligned_cols=116 Identities=14% Similarity=0.047 Sum_probs=56.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCCHHH
Q 003028 513 ARNYQSALKLYRDMQNAGFEPD--KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPD--EPVYGLLVDLWGKAGNVRK 588 (856)
Q Consensus 513 ~g~~~~A~~ll~~M~~~gi~pd--~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd--~~~y~~Li~~~~k~g~~~~ 588 (856)
.++...+...++.+......-. ......+...+...|++++|...|+.+......+. ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555554321110 11222233445555666666666666555431111 1123334455556666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 589 AWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQG 630 (856)
Q Consensus 589 A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~ 630 (856)
|+..++..... ......+......|.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666543322 22334455555666666666666666654
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.95 E-value=0.014 Score=49.54 Aligned_cols=17 Identities=0% Similarity=0.071 Sum_probs=6.5
Q ss_pred HHhcCCHHHHHHHHHHH
Q 003028 370 LGRARQFGAINKLLDQM 386 (856)
Q Consensus 370 ~~k~g~~~~A~~lf~~m 386 (856)
+...|++++|..+|+..
T Consensus 10 ~~~~~~~~~A~~~~~~~ 26 (100)
T cd00189 10 YYKLGDYDEALEYYEKA 26 (100)
T ss_pred HHHHhcHHHHHHHHHHH
Confidence 33333333333333333
No 154
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.89 E-value=0.013 Score=58.98 Aligned_cols=104 Identities=14% Similarity=0.256 Sum_probs=68.8
Q ss_pred CCCCCHHHHHHHHHhhhCh--------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003028 322 NYSMDAYQANQVLKQLQDH--------TVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQP 393 (856)
Q Consensus 322 ~~~~~~~~~~~vL~~l~~~--------~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~p 393 (856)
+-.-+..++..++..+... +=....+..|. ..|+..|..+|+.||+++=+. .+- -..+|+.+--
T Consensus 42 ~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~-efgv~kDL~~Y~~LLDvFPKg-~fv-p~n~fQ~~F~----- 113 (228)
T PF06239_consen 42 GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD-EFGVEKDLEVYKALLDVFPKG-KFV-PRNFFQAEFM----- 113 (228)
T ss_pred hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH-HcCCcccHHHHHHHHHhCCCC-Ccc-cccHHHHHhc-----
Confidence 3456777777777766322 22333445555 589999999999999998753 322 1222222211
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF 445 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~ 445 (856)
- --.+.+-|++++++|...|+-||..|+..|++.+.+.+.
T Consensus 114 ----------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 ----------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1 123557788999999999999999999999999877664
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.87 E-value=0.018 Score=48.82 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK 477 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k 477 (856)
|..+...+...|++++|..+|+++.+.. +.+...+..+...+...+++++|.+.|+...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 5566777788889999999998887653 3344677778888888889999999998887763 3345677788888888
Q ss_pred cCCHHHHHHHHHHHHHc
Q 003028 478 AGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 478 ~g~~~~A~~lf~~m~~~ 494 (856)
.|++++|...|....+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 89999998888877653
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.73 E-value=0.026 Score=60.80 Aligned_cols=130 Identities=13% Similarity=0.132 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK-AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCL 475 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k-~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y 475 (856)
+|..+++..-+.+..+.|..+|.+..+.+ ..+...|......-.. .++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555555555555555322 1122222222222112 34444466666665554 444555555666666
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003028 476 GKAGHLQAAHQLFCEMVNQGCIPN---LVTYNIMIALQAKARNYQSALKLYRDMQNA 529 (856)
Q Consensus 476 ~k~g~~~~A~~lf~~m~~~g~~pd---~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 529 (856)
.+.++.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666665543 1111 135666666666666666666666666553
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.64 E-value=0.062 Score=48.91 Aligned_cols=96 Identities=10% Similarity=0.016 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPN----VVTYNRLIHSYGRANYLNEALDVFKQMQVVGC--EPDRVTYCT 435 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~--~pd~~ty~~ 435 (856)
++-.+...+.+.|++++|.+.|+.+.+.. |+ ...+..+...+.+.|++++|...|+.+....- ......+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 34445555556666666666666665431 21 23444455566666666666666666554321 111334455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 436 LIDIHAKAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 436 Ll~~~~k~g~~~~A~~l~~~m~~~ 459 (856)
+..++.+.|+.++|.+.++++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 555555566666666666665554
No 158
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.63 E-value=0.79 Score=50.17 Aligned_cols=278 Identities=11% Similarity=0.094 Sum_probs=152.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
+|..+.......|+.+.|..+++ .+|+..- =|-.+.+.++.+.| +.+..+.| .||. +|..|+..--
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~------~Ep~~~~---qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~L~~ 67 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE------LEPRASK---QVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLHLKR 67 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH------cCCChHH---HHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHHHHH
Confidence 46777788888999999988763 3465532 24455667777777 34445544 4443 4555554433
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003028 442 KAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALK 521 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 521 (856)
+.. .. +++ .++.. .|. -..+...|++..+.+....+|.+--+. .......+-.++.. .+.++-..
T Consensus 68 ~l~-~s---~f~-~il~~--~p~---a~~l~~~~~r~~~~~~L~~~y~q~d~~----~~~a~~~l~~~~~~-~~~~~~~~ 132 (319)
T PF04840_consen 68 KLS-LS---QFF-KILNQ--NPV---ASNLYKKYCREQDRELLKDFYYQEDRF----QELANLHLQEALSQ-KDVEEKIS 132 (319)
T ss_pred hCC-HH---HHH-HHHHh--Ccc---hHHHHHHHHHhccHHHHHHHHHhcchH----HHHHHHHHHHHHhC-CChHHHHH
Confidence 332 22 223 22222 122 133455677766666655555432110 11111222222222 34444333
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH---HH-cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 522 LYRDMQNA-GFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEM---RR-KNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAM 596 (856)
Q Consensus 522 ll~~M~~~-gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m---~~-~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m 596 (856)
.+....+. +-..+......+ .++..++++.- .+ .+......+.+..|.-+...|+...|.++-.+.
T Consensus 133 ~L~~a~~~y~~~k~~~f~~~~---------~e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~F 203 (319)
T PF04840_consen 133 FLKQAQKLYSKSKNDAFEAKL---------IEEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEF 203 (319)
T ss_pred HHHHHHHHHHhcchhHHHHHH---------HHHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 33333221 000111111111 12222222221 11 122222334555677778889999998887776
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHH
Q 003028 597 LQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMF 676 (856)
Q Consensus 597 ~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~ 676 (856)
. -|+..-|...+.+|+..++|++-..+... +-++.-|..++.+|.+.|...+|..+..+
T Consensus 204 k----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k----------- 262 (319)
T PF04840_consen 204 K----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPK----------- 262 (319)
T ss_pred C----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHh-----------
Confidence 4 48999999999999999999987776432 22348889999999988876555443311
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHH
Q 003028 677 LLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSV 732 (856)
Q Consensus 677 ~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~l 732 (856)
+ .+..-+.+|.++|.+.+|.+.
T Consensus 263 ------------------------~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 263 ------------------------I----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred ------------------------C----------ChHHHHHHHHHCCCHHHHHHH
Confidence 1 124667889999999999765
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.58 E-value=0.19 Score=54.15 Aligned_cols=144 Identities=16% Similarity=0.236 Sum_probs=68.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHH
Q 003028 472 INCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKA-RNYQSALKLYRDMQNA----GFEPD--KVTYSIVMEV 544 (856)
Q Consensus 472 i~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~-g~~~~A~~ll~~M~~~----gi~pd--~~ty~~ll~a 544 (856)
+..|.+.|++..|-+++..+- ..|-.. |++++|++.|++..+. + .+. ...+..+...
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 344556666666555554443 233344 5666666666654322 2 111 2234455566
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-----CHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHH
Q 003028 545 LGHCGYLDEAEAVFAEMRRKNWVP-----DEP-VYGLLVDLWGKAGNVRKAWEWYEAMLQA--GLRPN--VPTCNSLLSA 614 (856)
Q Consensus 545 ~~~~g~~~~A~~l~~~m~~~g~~p-----d~~-~y~~Li~~~~k~g~~~~A~~l~~~m~~~--g~~pd--~~t~n~Li~a 614 (856)
+.+.|++++|.++|+++....... +.. .|-..+-++...||+..|.+.|++.... ++..+ ......||.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 667777777777777666542211 111 1222233445567777777777776542 12112 3445556666
Q ss_pred HHH--cCCHHHHHHHHHHH
Q 003028 615 FLR--VGQLSDAYHLLQGM 631 (856)
Q Consensus 615 y~~--~g~~e~A~~l~~~M 631 (856)
|-. ...+++|+.-|+.+
T Consensus 245 ~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTS
T ss_pred HHhCCHHHHHHHHHHHccc
Confidence 543 22355555555544
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.54 E-value=0.04 Score=59.33 Aligned_cols=131 Identities=15% Similarity=0.200 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMVRDG-CQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g-~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
.+|..++..+-+.+.++.|..+|.+..+.+ +..++....++|. |...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888888999999999988542 2233333344443 23356677799999988765 46777888888999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPDT---FTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd~---~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
+.+.++.+.|..+|++.+.. +.++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998765 33222 48888898888999999999999888875
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.52 E-value=0.082 Score=48.11 Aligned_cols=95 Identities=9% Similarity=-0.058 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHH
Q 003028 399 NRLIHSYGRANYLNEALDVFKQMQVVGC--EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLS--PDTFTYSVIINC 474 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~--~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~--pd~~ty~~Li~~ 474 (856)
-.+...+.+.|++++|.+.|.++....- ......+..+..++.+.|+++.|...|+.+...... ....++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444445555555555555443210 001223333444444445555555555544432100 112333344444
Q ss_pred HHccCCHHHHHHHHHHHHH
Q 003028 475 LGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 475 y~k~g~~~~A~~lf~~m~~ 493 (856)
+.+.|+.++|.+.++++.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHhCChHHHHHHHHHHHH
Confidence 4444444444444444444
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.43 E-value=0.053 Score=60.57 Aligned_cols=102 Identities=13% Similarity=0.024 Sum_probs=61.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 544 VLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSD 623 (856)
Q Consensus 544 a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~ 623 (856)
.+...|++++|..+|.++.+.. .-+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3445566666666666666543 2245556666666666677777777766666542 2345566666666777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003028 624 AYHLLQGMLNLGLKPSLQTYTLLLSC 649 (856)
Q Consensus 624 A~~l~~~M~~~g~~Pd~~ty~~Ll~a 649 (856)
|+..|++.++ +.|+...+...+..
T Consensus 89 A~~~~~~al~--l~P~~~~~~~~l~~ 112 (356)
T PLN03088 89 AKAALEKGAS--LAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 7777776665 44555444444433
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.39 E-value=0.14 Score=50.73 Aligned_cols=91 Identities=11% Similarity=0.053 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN--VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd--~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
...|..+...+...|++++|...|++..+....+. ...|..+...|.+.|++++|...+++..... +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44577777788888999999999988876432221 3577788888888899999999888887653 33456666677
Q ss_pred HHHHHcCCHHHHHH
Q 003028 438 DIHAKAGFLDVAMD 451 (856)
Q Consensus 438 ~~~~k~g~~~~A~~ 451 (856)
..+...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 77777776544443
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.33 E-value=0.16 Score=58.09 Aligned_cols=119 Identities=15% Similarity=0.112 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCC
Q 003028 604 NVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSP 683 (856)
Q Consensus 604 d~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~ 683 (856)
+..+...+..-+.+...+--|-++|..|-+. ..+.+...+.++|.+|..+-+..-+.-.+++.-....
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqw--- 813 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQW--- 813 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHH---
Confidence 3344445555555566666777777776431 3455556667777777665554433322222211111
Q ss_pred CCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCcccccCceeeeec
Q 003028 684 GPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLIN 757 (856)
Q Consensus 684 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~~Pd~~t~~~~~~w~~~ 757 (856)
..+ .|. +.-.-.+|.|.|+-.||.++++++....+.-+...--+..||.++
T Consensus 814 -------LAE--------------~Dr--FeEAqkAfhkAGr~~EA~~vLeQLtnnav~E~Rf~DA~y~yw~L~ 864 (1081)
T KOG1538|consen 814 -------LAE--------------NDR--FEEAQKAFHKAGRQREAVQVLEQLTNNAVAESRFNDAAYYYWMLS 864 (1081)
T ss_pred -------hhh--------------hhh--HHHHHHHHHHhcchHHHHHHHHHhhhhhhhhhhhccchhHHHHhh
Confidence 000 011 223346788999999999999988766554333222334557654
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.27 E-value=0.8 Score=48.19 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=32.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHH---HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNV-VTY---NRLIHSYGRANYLNEALDVFKQMQVV 424 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~-~ty---~~Li~~~~~~g~~~~A~~lf~~m~~~ 424 (856)
....+.+.|++++|.+.|+.+... .|+. ... -.+..+|.+.+++++|...|++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333445567777777777777654 2322 221 23445666677777777777766654
No 166
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.25 E-value=1.9 Score=52.37 Aligned_cols=181 Identities=11% Similarity=0.033 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003028 481 LQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAE 560 (856)
Q Consensus 481 ~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~ 560 (856)
...|...|-+-...... =...|..|-..|....+...|.+.|+...+.. ..|......+.+.|+...++++|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 44555544443332111 23466777777777667777777777766542 12344566677777777777777777322
Q ss_pred HHHcCCCCCHhhHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003028 561 MRRKNWVPDEPVYGL--LVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKP 638 (856)
Q Consensus 561 m~~~g~~pd~~~y~~--Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~P 638 (856)
.-+.. ..-...++. .--.|.+.++...|..-|+...... +.|...|..+..+|...|++..|+++|.+... +.|
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP 627 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRP 627 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCc
Confidence 22211 001111111 2334667777888888887776543 45777888888888888888888888887775 556
Q ss_pred CHHHHHHHHHH--HHhcCCcchHHHHHHHHHH
Q 003028 639 SLQTYTLLLSC--CTEARSPYDMGFCHELMAV 668 (856)
Q Consensus 639 d~~ty~~Ll~a--~~~~g~~~~a~~l~~~m~~ 668 (856)
+. +|.....+ -+..|.++++...+.++..
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 53 33333332 3456777777666655543
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.20 E-value=0.21 Score=49.46 Aligned_cols=131 Identities=17% Similarity=0.151 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD--RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVI 471 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd--~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~L 471 (856)
....|..+...|...|++++|...|++.......+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677778888889999999999998876532222 4578888888899999999999999888753 2356666677
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003028 472 INCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY 550 (856)
Q Consensus 472 i~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~ 550 (856)
..+|...|+...+..-++.... .+++|++++++....+ |+. |..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~--p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLA--PNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhC--chh--HHHHHHHHHhcCc
Confidence 7777777776555443333221 2466777777665532 332 5555555554443
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.15 E-value=0.081 Score=52.20 Aligned_cols=81 Identities=10% Similarity=-0.066 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQP--NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~p--d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
...|..+...+...|++++|...|+........+ ...+|..+...|...|++++|++.+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4456666677777788888888777776532111 12466677777777777777777777776542 22344455555
Q ss_pred HHHH
Q 003028 438 DIHA 441 (856)
Q Consensus 438 ~~~~ 441 (856)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.13 E-value=0.013 Score=50.42 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 374 RQFGAINKLLDQMVRDGCQ-PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM 452 (856)
Q Consensus 374 g~~~~A~~lf~~m~~~g~~-pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l 452 (856)
|+++.|..+|+.+.+.... ++...|-.+..+|.+.|++++|.+++++ ...+ ..+....-.+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555543210 1223333355555555555555555555 2111 11122222334555555555555555
Q ss_pred HHH
Q 003028 453 YKK 455 (856)
Q Consensus 453 ~~~ 455 (856)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.11 E-value=0.27 Score=57.51 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=61.4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003028 568 PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLL 646 (856)
Q Consensus 568 pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~L 646 (856)
.+...|..+.-.+...|++++|...|++..+. .|+...|..+...|...|+.++|.+.+++... +.|...||...
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~~~ 492 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLYWI 492 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHHHH
Confidence 45567777766677789999999999999885 47888999999999999999999999999886 56776676443
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.00 E-value=0.12 Score=50.98 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003028 434 CTLIDIHAKAGFLDVAMDMYKKMQAAGLSP--DTFTYSVIINCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 434 ~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~p--d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~ 493 (856)
..+...+...|++++|+..|++.......+ ...++..+..+|...|++++|.+.++....
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444444331111 112344444444555555555555544443
No 172
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.92 E-value=1.3 Score=46.51 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=28.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 576 LVDLWGKAGNVRKAWEWYEAMLQA--GLRPNVPTCNSLLSAFLRVGQLSDAYHLLQG 630 (856)
Q Consensus 576 Li~~~~k~g~~~~A~~l~~~m~~~--g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~ 630 (856)
+..-|.+.|.+..|..-|+.+.+. +.+......-.++.+|...|..++|......
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344455566666666666666543 1122333444555666666666666555443
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.90 E-value=0.019 Score=49.53 Aligned_cols=47 Identities=13% Similarity=0.271 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 409 NYLNEALDVFKQMQVVGCE-PDRVTYCTLIDIHAKAGFLDVAMDMYKK 455 (856)
Q Consensus 409 g~~~~A~~lf~~m~~~g~~-pd~~ty~~Ll~~~~k~g~~~~A~~l~~~ 455 (856)
|+++.|+.+|+++.+.... ++...+..+..+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555443210 1222333344455555555555555544
No 174
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.89 E-value=0.17 Score=56.47 Aligned_cols=85 Identities=14% Similarity=0.042 Sum_probs=34.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003028 407 RANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQ 486 (856)
Q Consensus 407 ~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~ 486 (856)
..|++++|+++|++..+.. +-+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|..
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3344444444444444332 2233334444444444444444444444444331 1133334444444444444444444
Q ss_pred HHHHHHH
Q 003028 487 LFCEMVN 493 (856)
Q Consensus 487 lf~~m~~ 493 (856)
.|++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 4444433
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.82 E-value=0.75 Score=49.59 Aligned_cols=145 Identities=13% Similarity=0.174 Sum_probs=77.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHH
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKA-GHLQAAHQLFCEMVNQ----GCIP-NLVTYNIMIALQA 511 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~-g~~~~A~~lf~~m~~~----g~~p-d~~ty~~Li~~~~ 511 (856)
..|...|++..|-+++.++ ...|-.. |++++|.+.|++..+. +..- -..++..+...+.
T Consensus 102 ~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 4555666666655555443 3345555 6777777777765432 2100 1234556677788
Q ss_pred HcCCHHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--HhhHHHHHHHHH
Q 003028 512 KARNYQSALKLYRDMQNAGFE-----PDKV-TYSIVMEVLGHCGYLDEAEAVFAEMRRKN--WVPD--EPVYGLLVDLWG 581 (856)
Q Consensus 512 ~~g~~~~A~~ll~~M~~~gi~-----pd~~-ty~~ll~a~~~~g~~~~A~~l~~~m~~~g--~~pd--~~~y~~Li~~~~ 581 (856)
+.|++++|+++|++....-.. .+.. .|...+-++...|+...|.+.++...... +..+ ..+...||.+|-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 888888888888887654322 1221 22233335556788888888888876542 2211 334455566654
Q ss_pred hc--CCHHHHHHHHHHHH
Q 003028 582 KA--GNVRKAWEWYEAML 597 (856)
Q Consensus 582 k~--g~~~~A~~l~~~m~ 597 (856)
.. ..++.|..-|+.+.
T Consensus 247 ~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS
T ss_pred hCCHHHHHHHHHHHcccC
Confidence 32 34555555555543
No 176
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.79 E-value=3.8 Score=47.85 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 432 TYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQA 511 (856)
Q Consensus 432 ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~ 511 (856)
.|+.+...++....+++|.+.|..-.. . ...+.+|.+..++++-+.+-..+.+ +....-.|..++.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHH
Confidence 455555555555555555555543211 0 1223444444444444444333332 4445556666777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003028 512 KARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFA 559 (856)
Q Consensus 512 ~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~ 559 (856)
..|.-++|.+.|-+-- .| ...+..|...+++.+|.++-+
T Consensus 864 svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred hhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666553321 11 234455666666666665544
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.69 E-value=0.31 Score=47.04 Aligned_cols=95 Identities=12% Similarity=0.024 Sum_probs=62.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 467 TYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLG 546 (856)
Q Consensus 467 ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~ 546 (856)
..-.+..-+...|++++|.++|+.+...... +..-|-.|-.++-..|++.+|+..|.......+ -|...+-.+-.++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3344455566777777777777777654322 455566677777777777777777777766542 34556666677777
Q ss_pred hcCChHHHHHHHHHHHH
Q 003028 547 HCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 547 ~~g~~~~A~~l~~~m~~ 563 (856)
..|+.+.|++.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776654
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.67 E-value=0.59 Score=54.75 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003028 464 DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNA 529 (856)
Q Consensus 464 d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 529 (856)
+...|.++.-.+...|++++|...|++..... |+...|..+...|...|+.++|.+.|++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44556555555555677777777777766653 46666666677777777777777777666553
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.59 E-value=0.045 Score=44.73 Aligned_cols=64 Identities=31% Similarity=0.384 Sum_probs=41.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 581 GKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLL 647 (856)
Q Consensus 581 ~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll 647 (856)
.+.|++++|..+|+.+.... +-+...+-.+..+|.+.|++++|..+++++.. ..|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHHH
Confidence 35677777777777776542 33666667777777777777777777777775 356655554443
No 180
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.55 E-value=0.59 Score=45.15 Aligned_cols=86 Identities=10% Similarity=0.063 Sum_probs=39.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003028 369 ILGRARQFGAINKLLDQMVRDGCQP-NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLD 447 (856)
Q Consensus 369 ~~~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~ 447 (856)
.+...|++++|.++|+.+... .| +..-|-.|-.++-..|++++|++.|....... +-|..++-.+-.++...|+.+
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHH
Confidence 334445555555555544432 12 23333444444444455555555555444443 234444444444444555555
Q ss_pred HHHHHHHHHH
Q 003028 448 VAMDMYKKMQ 457 (856)
Q Consensus 448 ~A~~l~~~m~ 457 (856)
.|.+-|+..+
T Consensus 121 ~A~~aF~~Ai 130 (157)
T PRK15363 121 YAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 181
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.41 E-value=9.6 Score=47.52 Aligned_cols=85 Identities=18% Similarity=0.090 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 003028 573 YGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQ--TYTLLLSCC 650 (856)
Q Consensus 573 y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~--ty~~Ll~a~ 650 (856)
|.+..+.+.....+++|.-+|+..-+ ...-+.+|..+|++.+|+.+..+|.. .-|.. +-..|..-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHH
Confidence 44444455566778888877776543 13567888889999999988887753 12222 224566667
Q ss_pred HhcCCcchHHHHHHHHHHc
Q 003028 651 TEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 651 ~~~g~~~~a~~l~~~m~~~ 669 (856)
...++.-+|.++..+....
T Consensus 1010 ~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHcccchhHHHHHHHHhcC
Confidence 8888888887776655433
No 182
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=4.2 Score=42.34 Aligned_cols=144 Identities=18% Similarity=0.173 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH----
Q 003028 502 TYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLV---- 577 (856)
Q Consensus 502 ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li---- 577 (856)
..+.++..+.-.|.+.-.+.++++..+...+-+......|+..-.+.|+.+.|...|++..+..-..+....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456677777778888888888888887666677777888888888899999999999887654444555554444
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 578 -DLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLS 648 (856)
Q Consensus 578 -~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~ 648 (856)
..|.-.+++..|...|.++.... +.|+..-|.-.-+..-.|+..+|++.+..|++ ..|...+-.+++-
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~~ 327 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVLF 327 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHHH
Confidence 34566788889999998887653 45666667666667778899999999999997 4566655554443
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.35 E-value=0.68 Score=42.93 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=22.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 406 GRANYLNEALDVFKQMQVVGCEPD--RVTYCTLIDIHAKAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 406 ~~~g~~~~A~~lf~~m~~~g~~pd--~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~ 458 (856)
-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..+|++...
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444443322 12233333444444444444444444433
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.25 E-value=0.069 Score=43.29 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 576 LVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 576 Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+...+.+.|++++|...|+.+.+.. +-+...|..+..++.+.|++++|...|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455677788888888888887653 33667777777888888888888888887775
No 185
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=9.4 Score=45.32 Aligned_cols=310 Identities=9% Similarity=0.051 Sum_probs=151.3
Q ss_pred hcCCCCCHHHHH-----HHHHhh---hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHH
Q 003028 320 NTNYSMDAYQAN-----QVLKQL---QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQF---GAINKLLDQMVR 388 (856)
Q Consensus 320 ~~~~~~~~~~~~-----~vL~~l---~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~---~~A~~lf~~m~~ 388 (856)
+.|+.++...+. .++.++ +.+..|.++-.|+....+ -....|......+.+..+. +.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~--~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPES--QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccc--cccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 345555555443 233333 567778888887753211 1145566666666665322 222222222322
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003028 389 DGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCE----PDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPD 464 (856)
Q Consensus 389 ~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~----pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd 464 (856)
. . -+-.+|..+..-...+|+.+.|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.|... .+
T Consensus 503 ~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~ 577 (829)
T KOG2280|consen 503 K-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LN 577 (829)
T ss_pred c-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HH
Confidence 1 1 24456777777777788888887776542221100 01122334444555555555555555555432 11
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHH----HcCCCCCHHHH
Q 003028 465 TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYR--DMQ----NAGFEPDKVTY 538 (856)
Q Consensus 465 ~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~--~M~----~~gi~pd~~ty 538 (856)
...|...+ .+.-.|..+|.+..... |..+ |-+.|-...+..+ +.-|. ... ..+..|+.
T Consensus 578 ~s~l~~~l------~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~-~a~~~~q~~~~~~~~~~r~~~l--- 641 (829)
T KOG2280|consen 578 RSSLFMTL------RNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQA-LASFHLQASYAAETIEGRIPAL--- 641 (829)
T ss_pred HHHHHHHH------HhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhh-hhhhhhhhhhhhhhhcccchhH---
Confidence 12221111 12334445554444321 1111 1122222222222 22111 100 11233332
Q ss_pred HHHHHHHHhcCChHHH----------HHHHHHHHH-cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003028 539 SIVMEVLGHCGYLDEA----------EAVFAEMRR-KNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPT 607 (856)
Q Consensus 539 ~~ll~a~~~~g~~~~A----------~~l~~~m~~-~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t 607 (856)
....++|.+.....-. ..+.+.+.. .+.....-+.+--+.-+...|+-.+|.++-.+.. -||-..
T Consensus 642 k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~ 717 (829)
T KOG2280|consen 642 KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRL 717 (829)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----Ccchhh
Confidence 2333344443331111 111222221 1323333445555666677788888888877765 478888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 003028 608 CNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFC 662 (856)
Q Consensus 608 ~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l 662 (856)
|.-=+.+++..+++++-+++-+.+. ...-|.-+..+|.+.|+.++|...
T Consensus 718 ~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KY 766 (829)
T KOG2280|consen 718 WWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKY 766 (829)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhh
Confidence 8888888888888888777665543 145677788888888876665543
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.17 E-value=0.77 Score=42.53 Aligned_cols=91 Identities=21% Similarity=0.199 Sum_probs=48.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHhhHHHHHHHHHh
Q 003028 507 IALQAKARNYQSALKLYRDMQNAGFEPD--KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWV--PDEPVYGLLVDLWGK 582 (856)
Q Consensus 507 i~~~~~~g~~~~A~~ll~~M~~~gi~pd--~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~--pd~~~y~~Li~~~~k 582 (856)
..++-..|+.++|+.+|++....|.... ...+..+-..+...|++++|..+++........ .+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3445556666667766666666665443 224444555666666666666666666553211 011122222334455
Q ss_pred cCCHHHHHHHHHHHH
Q 003028 583 AGNVRKAWEWYEAML 597 (856)
Q Consensus 583 ~g~~~~A~~l~~~m~ 597 (856)
.|+.++|...+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 666666666655443
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.13 E-value=0.21 Score=52.78 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=75.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 003028 546 GHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN-VPTCNSLLSAFLRVGQLSDA 624 (856)
Q Consensus 546 ~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd-~~t~n~Li~ay~~~g~~e~A 624 (856)
.+.+++.+|...|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+.. .|+ ..+|..|-.+|...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHH
Confidence 45677888888888877643 235666777778888888888888877777653 333 46788888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003028 625 YHLLQGMLNLGLKPSLQTYTLLLSCC 650 (856)
Q Consensus 625 ~~l~~~M~~~g~~Pd~~ty~~Ll~a~ 650 (856)
++.|++.++ +.|+..+|..=|...
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 888888886 788888887766654
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.10 E-value=0.077 Score=43.33 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=21.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQV 423 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~ 423 (856)
.|++++|.++|+.+.... +-+...+..+..+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444331 12344444444444444444444444444443
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.00 E-value=3.2 Score=42.29 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=28.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGL--SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~--~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
.+...|++.+|.+.|+.+...-. +--....-.++.+|.+.|+++.|...|+++.+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455666666666666655311 111233344555666666666666666665543
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.81 E-value=3.1 Score=42.36 Aligned_cols=172 Identities=11% Similarity=0.071 Sum_probs=75.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 367 VGILGRARQFGAINKLLDQMVRDGCQ--PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG 444 (856)
Q Consensus 367 i~~~~k~g~~~~A~~lf~~m~~~g~~--pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g 444 (856)
...+...|++++|.+.|+.+...... --....-.++.++-+.|++++|...|+++.+.-.......+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 33445667777777777777654110 1123344555666677777777777777655421111122222222222111
Q ss_pred CHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003028 445 FLDVAMDMYKKMQAAGLSPD-------TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQ 517 (856)
Q Consensus 445 ~~~~A~~l~~~m~~~g~~pd-------~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~ 517 (856)
...... ....| ...+..+|.-|=......+|...+..+.+. =...--.+...|.+.|.+.
T Consensus 92 ~~~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 92 QIPGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HH
T ss_pred hCccch---------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHH
Confidence 111100 00001 122333444444455555555555554431 0011112345566677777
Q ss_pred HHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHH
Q 003028 518 SALKLYRDMQNAGFEPD----KVTYSIVMEVLGHCGYLDE 553 (856)
Q Consensus 518 ~A~~ll~~M~~~gi~pd----~~ty~~ll~a~~~~g~~~~ 553 (856)
.|..-++.+.+.- |+ ......++.++.+.|..+.
T Consensus 159 aA~~r~~~v~~~y--p~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 159 AAIIRFQYVIENY--PDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhCChHH
Confidence 7776666666542 22 1233455556666665553
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=4.8 Score=41.92 Aligned_cols=129 Identities=14% Similarity=0.101 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----H
Q 003028 399 NRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVII-----N 473 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li-----~ 473 (856)
+.++.++.-.+.+.-.++++.+..+..-+.++.....|++.-.+.|+.+.|...|++..+..-..|..+++.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 33444444445555555555555554444455555555555555555555555555544332222333333222 2
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQN 528 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 528 (856)
.|.-.+++..|...|++....... |...-|.-.-+..-.|+..+|++.+..|..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 233344555555555554433211 333333333333334555555555555554
No 192
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.77 E-value=7.9 Score=42.44 Aligned_cols=109 Identities=19% Similarity=0.178 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 003028 503 YNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGK 582 (856)
Q Consensus 503 y~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k 582 (856)
.+..|.-+...|+...|.++-.+.. .||..-|...+.+++..+++++.+++-.. +-.+.-|..++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3444555556666666655544432 35666666667777777777666554322 1133556666777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 583 AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGM 631 (856)
Q Consensus 583 ~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M 631 (856)
.|+..+|..+..++. +..-+..|.+.|++.+|.+.-.+.
T Consensus 250 ~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777777766665521 244556666777777766654433
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.70 E-value=0.13 Score=42.17 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=46.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 003028 569 DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVG-QLSDAYHLLQGMLN 633 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g-~~e~A~~l~~~M~~ 633 (856)
+..+|..+...+...|++++|...|++..+.. +-+...|..+..+|...| ++++|++.|++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34567777777777888888888888777653 335667777777788887 67888887777665
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.45 E-value=0.2 Score=41.04 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG-FLDVAMDMYKKM 456 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g-~~~~A~~l~~~m 456 (856)
.|..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 34444444444444444444444444332 223333444444444444 344444444443
No 195
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=10 Score=42.00 Aligned_cols=164 Identities=14% Similarity=0.154 Sum_probs=104.9
Q ss_pred CCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 463 PDTFTYSVI-INCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIAL--QAKARNYQSALKLYRDMQNAGFEPDKVTYS 539 (856)
Q Consensus 463 pd~~ty~~L-i~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~--~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~ 539 (856)
|...+|..| ..++.-.|+.++|.++-....+.. ....+..++++ +.-.++.+.|...|.+....+ |+...--
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 333444433 356677888888888777666541 22233334433 345677888888888776643 4422211
Q ss_pred ---HH----------HHHHHhcCChHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003028 540 ---IV----------MEVLGHCGYLDEAEAVFAEMRRK---NWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRP 603 (856)
Q Consensus 540 ---~l----------l~a~~~~g~~~~A~~l~~~m~~~---g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~p 603 (856)
.. -+-..+.|++..|.+.+.+.+.. +..++...|........+.|+.++|..-.++....
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---- 316 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---- 316 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----
Confidence 11 12345778999999999988754 44566777777777888899999999888887652
Q ss_pred CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003028 604 NVP---TCNSLLSAFLRVGQLSDAYHLLQGMLNLG 635 (856)
Q Consensus 604 d~~---t~n~Li~ay~~~g~~e~A~~l~~~M~~~g 635 (856)
|.. .|..-..++...++|++|.+-|++..+..
T Consensus 317 D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 317 DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 322 23333445556778888888888877643
No 196
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.31 E-value=1.1 Score=49.64 Aligned_cols=146 Identities=16% Similarity=0.214 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVG-CEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTY-SVII 472 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g-~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty-~~Li 472 (856)
...|..+|+...+..-++.|..+|-+..+.| +.+++..++++|.-++ .|+..-|..+|+-=... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3445555555555555666666666665555 4455555666555444 34555555555543322 2233332 3444
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 473 NCLGKAGHLQAAHQLFCEMVNQGCIPN--LVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLG 546 (856)
Q Consensus 473 ~~y~k~g~~~~A~~lf~~m~~~g~~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~ 546 (856)
..+...++-+.|..+|+.-..+ +..+ ...|..||+.-..-|+...+..+=+.|... .|...+...+..-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 5555556666666666533221 0011 335666666666666666666665555543 344434344444333
No 197
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.30 E-value=0.52 Score=44.10 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 534 DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLS 613 (856)
Q Consensus 534 d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ 613 (856)
|..++..+|-++++.|+++....+++..= |+.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566666666666666666666654332 22221100 0000 1113346789999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCC
Q 003028 614 AFLRVGQLSDAYHLLQGMLN-LGLKPSLQTYTLLLSCCTEARS 655 (856)
Q Consensus 614 ay~~~g~~e~A~~l~~~M~~-~g~~Pd~~ty~~Ll~a~~~~g~ 655 (856)
+|+..|++..|+++.+...+ .++..+..++..|++-+...-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999998876 5788888999999987654443
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.27 E-value=0.68 Score=49.27 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNV----VTYNRLIHSYGRANYLNEALDVFKQMQ 422 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~----~ty~~Li~~~~~~g~~~~A~~lf~~m~ 422 (856)
|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+...|...|++++|...|+.+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444434445555555555555443 1221 233344444444555555555555444
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.24 E-value=6.3 Score=39.04 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHH
Q 003028 427 EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCI-PNLVTYNI 505 (856)
Q Consensus 427 ~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~-pd~~ty~~ 505 (856)
.|+..--..|..++.+.|++.+|...|++....-+.-|....-.+.++....+++.+|...++.+.+.... .+..+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555555566666666666666666666554333445555555556666666666666666655543200 01122333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 003028 506 MIALQAKARNYQSALKLYRDMQN 528 (856)
Q Consensus 506 Li~~~~~~g~~~~A~~ll~~M~~ 528 (856)
+...|.-.|++.+|...|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 44555555555555555555554
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.20 E-value=0.26 Score=40.76 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=47.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003028 578 DLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTY 643 (856)
Q Consensus 578 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty 643 (856)
..|.+.+++++|.++++.+.... +.+...|......|.+.|++++|.+.|++.++ ..|+..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHH
Confidence 46778888888888888888753 44667777788888888888888888888886 44554443
No 201
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.19 E-value=0.75 Score=48.68 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=64.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQS 518 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 518 (856)
-+.+.+++.+|+..|.+.++. .+-|.+.|..-..+|++.|.++.|.+=.+.-...... -..+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 345667777777777777775 2345566666677777777777777666655543111 34467777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH
Q 003028 519 ALKLYRDMQNAGFEPDKVTYSI 540 (856)
Q Consensus 519 A~~ll~~M~~~gi~pd~~ty~~ 540 (856)
|++.|++.++ +.|+-.+|-.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHH
Confidence 7777777665 4566555543
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.03 E-value=6.4 Score=45.71 Aligned_cols=87 Identities=18% Similarity=0.209 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---------
Q 003028 536 VTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVP--------- 606 (856)
Q Consensus 536 ~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~--------- 606 (856)
.+...+...+-+...+..|-++|..|-. ...+++.....+++++|..+-+...+ +.||+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhh
Confidence 3444444445566677778888876643 24667778888888888888777665 234432
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 607 --TCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 607 --t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
-|...-.+|.+.|+-.+|..+++++..
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 233344567777777788777777654
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.99 E-value=0.34 Score=46.41 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVF 418 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf 418 (856)
.|..+|.+|...|+..+|+++|
T Consensus 98 ~~~~lm~~~~~~g~~~~A~~~Y 119 (146)
T PF03704_consen 98 AYRLLMRALAAQGRRAEALRVY 119 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHH
Confidence 3333333333333333333333
No 204
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.89 E-value=1.2 Score=51.07 Aligned_cols=129 Identities=14% Similarity=0.233 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
..+.++..+-+.|..+.|+++-..-. .-.....+.|+++.|.++.+++ .+...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 34555555555555555555433221 1123344555555555543322 24445555555555
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003028 477 KAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEA 556 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~ 556 (856)
+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....| -++....++...|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 55555555555554432 3444444555555544444444444333 12333333344444444444
Q ss_pred HH
Q 003028 557 VF 558 (856)
Q Consensus 557 l~ 558 (856)
++
T Consensus 424 lL 425 (443)
T PF04053_consen 424 LL 425 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.88 E-value=7.4 Score=38.56 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 503 YNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 503 y~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
--.|..++...|++.+|...|.+...--+.-|......+.++....++..+|...++.+.+
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 3334444444444444444444443322223333333444444444444444444444433
No 206
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.82 E-value=0.26 Score=39.84 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=22.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 369 ILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQ 422 (856)
Q Consensus 369 ~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~ 422 (856)
.+.+.|++++|...|+.+.+.. +-+...|..+..++.+.|++++|..+|+++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444432 1133344444444444444444444444443
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.81 E-value=0.34 Score=46.37 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 003028 572 VYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN-----LGLKPSLQTYT 644 (856)
Q Consensus 572 ~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~-----~g~~Pd~~ty~ 644 (856)
+...++..+...|+++.|..+++.+.... +-|...|..+|.+|...|+..+|+++|+++.. .|+.|+..|-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 55667777888899999999998888753 55778889999999999999999988887753 57888876543
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.69 E-value=1.1 Score=47.56 Aligned_cols=61 Identities=11% Similarity=0.041 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 573 YGLLVDLWGKAGNVRKAWEWYEAMLQAG--LRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 573 y~~Li~~~~k~g~~~~A~~l~~~m~~~g--~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+-.+...|...|++++|...|+.+.+.- -+.....+-.+...|...|+.++|..+|+++++
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444555555555555544320 011122333334444455555555555555544
No 209
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.57 E-value=0.74 Score=43.09 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 003028 462 SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ-GCIPNLVTYNIMIA 508 (856)
Q Consensus 462 ~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~-g~~pd~~ty~~Li~ 508 (856)
.|+..+..+++.+|+..|++..|.++++...+. +++.+...|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 444555555555555555555555555444432 33334444444443
No 210
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.55 E-value=2.7 Score=39.88 Aligned_cols=124 Identities=16% Similarity=0.171 Sum_probs=58.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003028 470 VIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCG 549 (856)
Q Consensus 470 ~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g 549 (856)
.++..+...+.......+++.+...+. .+...+|.++..|++... .+.++.+.. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 344445555555555555555555442 345555556665555422 233333331 112233344555555556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 550 YLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKA-GNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFL 616 (856)
Q Consensus 550 ~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~-g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~ 616 (856)
.++++..++..+.. +...+..+... ++++.|.+++.+- -+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 56565555554421 22222323333 5566666655541 24555666655544
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.50 E-value=0.61 Score=50.98 Aligned_cols=129 Identities=17% Similarity=0.066 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----cCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCCHHH
Q 003028 538 YSIVMEVLGHCGYLDEAEAVFAEMRR----KNWV-PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ----AG-LRPNVPT 607 (856)
Q Consensus 538 y~~ll~a~~~~g~~~~A~~l~~~m~~----~g~~-pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~----~g-~~pd~~t 607 (856)
|..|-+.|.-.|+++.|...++.-.. .|-+ .....+..|.+++.-.|+++.|.+.|+.-.. .| -.....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 44444444455666666665554221 1211 1223455666666666666666666654331 11 1123344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 003028 608 CNSLLSAFLRVGQLSDAYHLLQGMLN-----LGLKPSLQTYTLLLSCCTEARSPYDMGFCHELM 666 (856)
Q Consensus 608 ~n~Li~ay~~~g~~e~A~~l~~~M~~-----~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m 666 (856)
+-.|...|.-..++++|+.++.+-+. ....-....|.+|-.++...|..+.|..+.+.-
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 55566666666666666666654432 112223456666666666666655555544433
No 212
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.26 E-value=0.96 Score=47.26 Aligned_cols=107 Identities=17% Similarity=0.299 Sum_probs=55.0
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003028 355 GFKHDEHTYTTMVGILGRA-----RQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD 429 (856)
Q Consensus 355 g~~pd~~~y~~Li~~~~k~-----g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd 429 (856)
+-+.|-.+|-+++..+... +.++-....+..|.+.|+..|..+|+.||+.+-+.. +.|.
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~ 125 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ 125 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH
Confidence 3445666777766666433 455555556666666666666666666665443322 1111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 003028 430 RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH 480 (856)
Q Consensus 430 ~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~ 480 (856)
.. +..+.--|- .+-+-+++++++|...|+.||-.+-..|+++|++.+.
T Consensus 126 nv-fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 126 NV-FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HH-HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11 111111111 1223455666666666666666666666666665554
No 213
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.09 E-value=0.57 Score=48.88 Aligned_cols=116 Identities=16% Similarity=0.293 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHhhhCh--------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003028 322 NYSMDAYQANQVLKQLQDH--------TVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQP 393 (856)
Q Consensus 322 ~~~~~~~~~~~vL~~l~~~--------~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~p 393 (856)
+-.-|..++...+..++.. +-....+..|. ..|+..|..+|+.||+++-|..-. |
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~-eyGVerDl~vYk~LlnvfPKgkfi----------------P 124 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMK-EYGVERDLDVYKGLLNVFPKGKFI----------------P 124 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH-HhcchhhHHHHHHHHHhCcccccc----------------c
Confidence 3345556665555555322 11222233443 478888888888888876544321 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF-LDVAMDMYKKMQ 457 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~-~~~A~~l~~~m~ 457 (856)
... +....--|- .+-+-+++++++|...|+.||-.+-..|++++.+.+. ..+...++-.|-
T Consensus 125 ~nv-fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 125 QNV-FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHH-HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 211 222222222 2345678899999999999999999999999988775 334444444443
No 214
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.07 E-value=3.5 Score=39.00 Aligned_cols=84 Identities=14% Similarity=0.276 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG 444 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g 444 (856)
.++..+.+.+....+..+++.+...+. .+...++.+|..|++.+ ..+.++.+.. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 455555555566666666666555442 45555666666665542 2333344332 122233344555666666
Q ss_pred CHHHHHHHHHHH
Q 003028 445 FLDVAMDMYKKM 456 (856)
Q Consensus 445 ~~~~A~~l~~~m 456 (856)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666665554
No 215
>smart00463 SMR Small MutS-related domain.
Probab=93.05 E-value=0.42 Score=40.72 Aligned_cols=77 Identities=36% Similarity=0.540 Sum_probs=56.2
Q ss_pred eeeccccccchhhHHHHHHHHHHHHHHHHHcCCCCCceeeeeeccccCCcccchHHHHHHHHHHhhcCCCCcccCCCceE
Q 003028 754 WLINLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHMFSFPFFTENGNSGC 833 (856)
Q Consensus 754 w~~~~~~l~~g~a~~g~~~~l~~~~~~m~~~g~~Pd~it~i~~l~~~~~~~~~~~l~~a~~~ll~~~~~pf~~~~~~~gc 833 (856)
|.+|+|.|....|...+. .|..++...+.. ..+.+|+|.|.++. .+...+++++..++....++|.+. .+.|+
T Consensus 2 ~~lDLHG~~~~eA~~~l~----~~l~~~~~~~~~-~~~~II~G~G~~s~-~g~~~i~~~l~~~l~~~~~~~~~~-~~~G~ 74 (80)
T smart00463 2 WSLDLHGLTVEEALTALD----KFLNNARLKGLE-QKLVIITGKGKHSL-GGKSGVKPALKEHLRVESFRFAEE-GNSGV 74 (80)
T ss_pred CeEEcCCCCHHHHHHHHH----HHHHHHHHcCCC-ceEEEEEcccCCCc-cchhhHHHHHHhchhhcccccCCC-CCCeE
Confidence 788999998877765544 444566666543 56889999998876 345678999888887666777665 78899
Q ss_pred EEec
Q 003028 834 FVGC 837 (856)
Q Consensus 834 ~v~~ 837 (856)
++..
T Consensus 75 ~~v~ 78 (80)
T smart00463 75 LVVK 78 (80)
T ss_pred EEEE
Confidence 8743
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.80 E-value=14 Score=41.22 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 603 PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNL 634 (856)
Q Consensus 603 pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~ 634 (856)
.+-..+.+++.++.-.|+.++|.+..++|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 44555667777777788888888888887763
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.74 E-value=0.69 Score=38.17 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=19.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 406 GRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQ 457 (856)
Q Consensus 406 ~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~ 457 (856)
.+.+++++|+++++.+...+ +.+...|.....++.+.|++++|.+.|+...
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33344444444444443332 2233333333333344444444444444433
No 218
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.57 E-value=2.1 Score=49.05 Aligned_cols=157 Identities=10% Similarity=0.096 Sum_probs=81.5
Q ss_pred HHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 003028 404 SYGRANYLNEALDVFKQMQ-VVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQ 482 (856)
Q Consensus 404 ~~~~~g~~~~A~~lf~~m~-~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~ 482 (856)
...-.++++++.++...-. -..+ ...-.+.++.-+-+.|..+.|+++-.+-. .-.....++|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 3344677777766664111 1111 13346666666667777777776644322 1234455667777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003028 483 AAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMR 562 (856)
Q Consensus 483 ~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~ 562 (856)
.|.++.++. .+...|..|.......|+++-|.+.|.+.. -|..|+-.|.-.|+.+...++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHH
Confidence 776655443 255567777777777777777777666543 24455555666666666666665555
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003028 563 RKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEA 595 (856)
Q Consensus 563 ~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~ 595 (856)
..| -++....++...|++++..+++.+
T Consensus 401 ~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred Hcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 544 145555555556666666655543
No 219
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=92.48 E-value=2 Score=47.17 Aligned_cols=132 Identities=15% Similarity=0.085 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----HHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHh
Q 003028 502 TYNIMIALQAKARNYQSALKLYRDM----QNAGFEP-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRR----KN-WVPDEP 571 (856)
Q Consensus 502 ty~~Li~~~~~~g~~~~A~~ll~~M----~~~gi~p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~----~g-~~pd~~ 571 (856)
.|..|-..|.-.|+++.|+...+.- ++.|-.. ....+..+-+++.-.|+++.|.+.|+.... .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666677788999988776532 2223221 234677888888888999999988876542 22 123455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 572 VYGLLVDLWGKAGNVRKAWEWYEAMLQA-----GLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 572 ~y~~Li~~~~k~g~~~~A~~l~~~m~~~-----g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
..-.|.+.|.-..++++|..++.+-... ...-....|..|..+|...|..++|+.+...-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6667788888888899999888764321 1123567889999999999999999998877664
No 220
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.43 E-value=22 Score=39.93 Aligned_cols=148 Identities=17% Similarity=0.235 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH-HHHH
Q 003028 500 LVTYNIMIALQAKARNYQSALKLYRDMQNAG-FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVY-GLLV 577 (856)
Q Consensus 500 ~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g-i~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y-~~Li 577 (856)
...|..+|.+-.+..-.+.|..+|-+..+.+ +.+++..++++|..++ .|+...|..+|+.-...- ||..+| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHH
Confidence 4456677777777777888888998888888 5677888888888776 577888888888755532 343333 4556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003028 578 DLWGKAGNVRKAWEWYEAMLQAGLRPN--VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEA 653 (856)
Q Consensus 578 ~~~~k~g~~~~A~~l~~~m~~~g~~pd--~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~ 653 (856)
.-+...++-+.|..+|+.-.++ +..+ ...|..+|..=..-|++..|..+-+.|.+ +.|...+...+.+-|.-.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik 548 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhh
Confidence 6677888888899888855432 1222 46788888888888888888888888876 567776666666665443
No 221
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=5 Score=42.75 Aligned_cols=99 Identities=13% Similarity=0.057 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHhhHHH
Q 003028 499 NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHC---GYLDEAEAVFAEMRRKNWVPDEPVYGL 575 (856)
Q Consensus 499 d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~---g~~~~A~~l~~~m~~~g~~pd~~~y~~ 575 (856)
|...|-.|-..|...|+++.|...|....+.- .++...+..+.+++... ..-.++..+|+++.+.. .-|+.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 66677777777777777777777777665531 12233344444443222 23345566666665543 224444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 576 LVDLWGKAGNVRKAWEWYEAMLQA 599 (856)
Q Consensus 576 Li~~~~k~g~~~~A~~l~~~m~~~ 599 (856)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555666666666666666553
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.28 E-value=0.28 Score=41.30 Aligned_cols=63 Identities=27% Similarity=0.486 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQA--GLR---PN-VPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 571 ~~y~~Li~~~~k~g~~~~A~~l~~~m~~~--g~~---pd-~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.+|+.+...|...|++++|+..|++..+. ... |+ ..+++.+...|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666677777777777777777766532 011 22 45677777777788888888887776653
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.16 E-value=19 Score=42.96 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQ----PNVVTYNRLIHSYGRANYLNEALDVFKQMQ 422 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~----pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~ 422 (856)
..+|..+..-...+|+++.|..+++.=+..+.. .+..-+..-+.-..+.|+.+....++-.|.
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 346888888888899999999988643322110 011223444555566666666666665554
No 224
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.12 E-value=4.5 Score=43.85 Aligned_cols=127 Identities=16% Similarity=0.365 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCC-
Q 003028 411 LNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK--A----GFLDVAMDMYKKMQAAGL---SPDTFTYSVIINCLGKAGH- 480 (856)
Q Consensus 411 ~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k--~----g~~~~A~~l~~~m~~~g~---~pd~~ty~~Li~~y~k~g~- 480 (856)
+++.+++++.|.+.|+..+..+|-+..-.... . ....+|..+|+.|++... .++...+.+|+.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455566677777777776666554333333 1 134566777777776532 2344555555443 2222
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 481 ---LQAAHQLFCEMVNQGCIPNLV--TYNIMIALQAKARN--YQSALKLYRDMQNAGFEPDKVTYS 539 (856)
Q Consensus 481 ---~~~A~~lf~~m~~~g~~pd~~--ty~~Li~~~~~~g~--~~~A~~ll~~M~~~gi~pd~~ty~ 539 (856)
.+.++.+|+.+.+.|+..+-. ....++...-.... ...+.++++.+.+.|+++....|.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc
Confidence 345566666666666544322 22222222211111 345666777777777666655444
No 225
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.09 E-value=13 Score=36.43 Aligned_cols=200 Identities=20% Similarity=0.164 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 003028 431 VTYCTLIDIHAKAGFLDVAMDMYKKMQAA-GLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIA- 508 (856)
Q Consensus 431 ~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~-g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~- 508 (856)
..+......+...+.+..+...+...... ........+..+...+...+.+..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444444555555555444444331 122233344444444444445555555555544432221 111111122
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 003028 509 LQAKARNYQSALKLYRDMQNAGF--EPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNV 586 (856)
Q Consensus 509 ~~~~~g~~~~A~~ll~~M~~~gi--~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~ 586 (856)
.+...|+++.|...|.+...... ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45556666666666665533111 0112222233333445556666666665555432111244555555556666666
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 587 RKAWEWYEAMLQAGLRPN-VPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 587 ~~A~~l~~~m~~~g~~pd-~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+.|...+...... .|+ ...+..+...+...+..+++...+.+...
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666543 222 33333444444455556666666665554
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.96 E-value=24 Score=39.35 Aligned_cols=173 Identities=16% Similarity=0.131 Sum_probs=90.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 399 NRLIHSYGRANYLNEALDVFKQMQVVG---CEPDRVTYCTLIDIHAK---AGFLDVAMDMYKKMQAAGLSPDTFTYSVII 472 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m~~~g---~~pd~~ty~~Ll~~~~k---~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li 472 (856)
..|+-.|....+++...++++.|...- +.-....-....-++.+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344455777778888888888776531 11111212223334445 677777777777755555556666666655
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--
Q 003028 473 NCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY-- 550 (856)
Q Consensus 473 ~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~-- 550 (856)
..|-.. |. +.+.. |... .++|+..|.+.-+. .||..+=..++..+...|.
T Consensus 225 RIyKD~---------~~---~s~~~-d~~~-------------ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~ 276 (374)
T PF13281_consen 225 RIYKDL---------FL---ESNFT-DRES-------------LDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDF 276 (374)
T ss_pred HHHHHH---------HH---HcCcc-chHH-------------HHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcc
Confidence 444221 11 11111 2111 45566666554432 2332221122222222222
Q ss_pred --hHHHHHHH---H-HHHHcC---CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 551 --LDEAEAVF---A-EMRRKN---WVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA 599 (856)
Q Consensus 551 --~~~A~~l~---~-~m~~~g---~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~ 599 (856)
-.+..++- . .+.++| -..+-..+.+++.++.-.|+.++|.+..++|...
T Consensus 277 ~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 277 ETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 11222222 1 111223 2346667788899999999999999999999864
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.83 E-value=1.5 Score=49.45 Aligned_cols=62 Identities=18% Similarity=0.047 Sum_probs=31.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 570 EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNV----PTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 570 ~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~----~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
...++.+..+|.+.|++++|...|++..+. .|+. .+|..+..+|...|+.++|++.|++.++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554442 2332 2355555555555555555555555554
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.83 E-value=7.3 Score=36.43 Aligned_cols=59 Identities=20% Similarity=0.351 Sum_probs=24.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003028 541 VMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG 600 (856)
Q Consensus 541 ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g 600 (856)
.+..+...|.-++..+++.++.+ +-.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 34444444555555555544443 223444444444455555555555555554444444
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=91.77 E-value=0.43 Score=40.11 Aligned_cols=60 Identities=28% Similarity=0.426 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVV----GC-EPD-RVTYCTLIDIHAKAGFLDVAMDMYKKM 456 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~----g~-~pd-~~ty~~Ll~~~~k~g~~~~A~~l~~~m 456 (856)
+|+.+...|...|++++|++.|++..+. |- .|+ ..+++.+..+|...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555544321 10 011 334445555555555555555555544
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.41 E-value=4.4 Score=45.83 Aligned_cols=65 Identities=9% Similarity=-0.023 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 358 HDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNV----VTYNRLIHSYGRANYLNEALDVFKQMQVV 424 (856)
Q Consensus 358 pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~----~ty~~Li~~~~~~g~~~~A~~lf~~m~~~ 424 (856)
.+...|+.+..+|.+.|++++|...|+...+. .|+. .+|..+..+|...|+.++|++.|++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35667888888888888888888888887764 4553 34777778888888888888888777653
No 231
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.31 E-value=13 Score=41.37 Aligned_cols=274 Identities=16% Similarity=0.061 Sum_probs=147.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG 444 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g 444 (856)
..-..+.+...+..|+..+....+.. +.+..-|..-...+..-+++++|+--.+.-.+.. .-....+.-.-.++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhH
Confidence 34566667777777777777777653 2344455555556666667777666655544321 111123333333444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHH-HHHHHHcCCHHHHHHH
Q 003028 445 FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG-CIPNLVTYNIM-IALQAKARNYQSALKL 522 (856)
Q Consensus 445 ~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g-~~pd~~ty~~L-i~~~~~~g~~~~A~~l 522 (856)
+..+|.+.|+ +...| ....|+..++.+.... -+|...+|-.| ...+.-.|++++|...
T Consensus 132 ~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 4444444443 11111 1112222222222221 12334444443 2456678888888877
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH---HH----------HHHhcCCHH
Q 003028 523 YRDMQNAGFEPDKVTYSIVMEV--LGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLL---VD----------LWGKAGNVR 587 (856)
Q Consensus 523 l~~M~~~gi~pd~~ty~~ll~a--~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~L---i~----------~~~k~g~~~ 587 (856)
--...+.. + ...+...+++ +--.++.+.|...|++....+ |+-..-..+ .+ -..+.|++.
T Consensus 192 a~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 192 AIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 77666542 2 2234445544 334577888888888776543 443332222 11 234668888
Q ss_pred HHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCCcchHHH
Q 003028 588 KAWEWYEAMLQA---GLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLL---SCCTEARSPYDMGF 661 (856)
Q Consensus 588 ~A~~l~~~m~~~---g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll---~a~~~~g~~~~a~~ 661 (856)
.|.+.|.+.+.. ...++...|........+.|+.++|+.-.++.+. .|..-...++ .++...++|+++.+
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877642 3456667777777788888888888888777764 3332222222 23445566666665
Q ss_pred HHHHHHHc
Q 003028 662 CHELMAVS 669 (856)
Q Consensus 662 l~~~m~~~ 669 (856)
-++...+.
T Consensus 343 d~~~a~q~ 350 (486)
T KOG0550|consen 343 DYEKAMQL 350 (486)
T ss_pred HHHHHHhh
Confidence 55544433
No 232
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.22 E-value=6.6 Score=42.56 Aligned_cols=129 Identities=16% Similarity=0.305 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCC-
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK--AG----HLQAAHQLFCEMVNQGC---IPNLVTYNIMIALQAKARN- 515 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k--~g----~~~~A~~lf~~m~~~g~---~pd~~ty~~Li~~~~~~g~- 515 (856)
+++.+.+++.|++.|+.-+..+|-+..-.... .. ....|..+|+.|.+... .++-..+.+|+.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667789999999998888777664433333 22 35678888888887632 2344556666544 2233
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHhhHHHH
Q 003028 516 ---YQSALKLYRDMQNAGFEPDKV--TYSIVMEVLGHCGY--LDEAEAVFAEMRRKNWVPDEPVYGLL 576 (856)
Q Consensus 516 ---~~~A~~ll~~M~~~gi~pd~~--ty~~ll~a~~~~g~--~~~A~~l~~~m~~~g~~pd~~~y~~L 576 (856)
.+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+.++++.+.+.++++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 245667777777767655422 22223322221111 33566667777777766665555544
No 233
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.17 E-value=24 Score=37.83 Aligned_cols=102 Identities=6% Similarity=0.008 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHccCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 466 FTYSVIINCLGKAGHLQ---AAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVM 542 (856)
Q Consensus 466 ~ty~~Li~~y~k~g~~~---~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll 542 (856)
.++..++.+|...+..+ +|.++++.+.+.... ....+-.-+..+.+.++.+++.+.+.+|...-..+ ...+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~-e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS-ESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc-cchHHHHH
Confidence 34555666666666543 445555555433211 23334344555555777777777777776652212 22344444
Q ss_pred HHH---HhcCChHHHHHHHHHHHHcCCCCCH
Q 003028 543 EVL---GHCGYLDEAEAVFAEMRRKNWVPDE 570 (856)
Q Consensus 543 ~a~---~~~g~~~~A~~l~~~m~~~g~~pd~ 570 (856)
..+ .. .....+...+..+....+.|..
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 433 22 2234555555555544444443
No 234
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.07 E-value=26 Score=44.01 Aligned_cols=36 Identities=8% Similarity=0.032 Sum_probs=20.0
Q ss_pred cCCCCCceeeeeeccccCCcccchHHHHHHHHHHhh
Q 003028 784 SGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHM 819 (856)
Q Consensus 784 ~g~~Pd~it~i~~l~~~~~~~~~~~l~~a~~~ll~~ 819 (856)
.+++|+...++.+|.+++.-..+..+..+.+.++..
T Consensus 1181 e~~r~E~~~Ll~~l~~~g~~eqa~~Lq~~f~ev~~~ 1216 (1265)
T KOG1920|consen 1181 ENIRNELKRLLEVLVTFGMDEQARALQKAFDEVLQA 1216 (1265)
T ss_pred hcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 456666666666666666544444455555544443
No 235
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.98 E-value=8.4 Score=41.10 Aligned_cols=101 Identities=11% Similarity=0.043 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCCHHHH
Q 003028 427 EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG---HLQAAHQLFCEMVNQGCIPNLVTY 503 (856)
Q Consensus 427 ~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g---~~~~A~~lf~~m~~~g~~pd~~ty 503 (856)
+-|...|-.|-..|...|+++.|..-|.+..+. -.++...+..+..++.... +-.++..+|+++...... |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 334455555555555555555555555555443 1223333333333322211 234455555555543221 44444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003028 504 NIMIALQAKARNYQSALKLYRDMQNA 529 (856)
Q Consensus 504 ~~Li~~~~~~g~~~~A~~ll~~M~~~ 529 (856)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44455555555555555555555544
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.33 E-value=9.2 Score=44.41 Aligned_cols=164 Identities=13% Similarity=0.170 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC-----CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDG-CQP-----NVVTYNRLIHSYGR----ANYLNEALDVFKQMQVVGCEPDRV 431 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g-~~p-----d~~ty~~Li~~~~~----~g~~~~A~~lf~~m~~~g~~pd~~ 431 (856)
....++...+-.|+-+.+.+++.+-.+.+ +.- -...|+.++..++. ....+.|.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 35567777777777777777776655421 111 12235555544443 35678888888888765 46655
Q ss_pred HHHHH-HHHHHHcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 432 TYCTL-IDIHAKAGFLDVAMDMYKKMQAAGL---SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMI 507 (856)
Q Consensus 432 ty~~L-l~~~~k~g~~~~A~~l~~~m~~~g~---~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li 507 (856)
.|... -..+...|++++|++.|++...... +.....+--+.-.+.-..++++|.+.|..+.+..-- +...|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHH
Confidence 55443 3556677888888888887653211 122344445666778888999999999988875322 334444443
Q ss_pred H-HHHHcCCH-------HHHHHHHHHHHH
Q 003028 508 A-LQAKARNY-------QSALKLYRDMQN 528 (856)
Q Consensus 508 ~-~~~~~g~~-------~~A~~ll~~M~~ 528 (856)
. ++...|+. ++|.++|.+...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3 33456666 888888887643
No 237
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.73 E-value=21 Score=34.82 Aligned_cols=223 Identities=17% Similarity=0.082 Sum_probs=152.9
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLS-PDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ-GCIPNLVTYNIMIALQAKARNYQSAL 520 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~-pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~-g~~pd~~ty~~Li~~~~~~g~~~~A~ 520 (856)
.+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666666554322 13677888888999999999999999887652 22345667777788888888999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 521 KLYRDMQNAGFEPDKVTYSIVME-VLGHCGYLDEAEAVFAEMRRKNW--VPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 521 ~ll~~M~~~gi~pd~~ty~~ll~-a~~~~g~~~~A~~l~~~m~~~g~--~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
+.+.........+.. ....... .+...|+++.+...+........ ......+......+...++.+.|...+....
T Consensus 116 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDPDL-AEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 999988875544422 2222333 78899999999999999865221 1233444455555778899999999999998
Q ss_pred HcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003028 598 QAGLRP-NVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS-LQTYTLLLSCCTEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 598 ~~g~~p-d~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd-~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~ 669 (856)
... .. ....+..+...+...++++.|...+...... .|+ ...+..+...+...+..+.+...+......
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 752 23 4678888999999999999999999998873 444 333444444444555555555555444433
No 238
>PRK15331 chaperone protein SicA; Provisional
Probab=89.61 E-value=17 Score=35.55 Aligned_cols=88 Identities=15% Similarity=0.023 Sum_probs=53.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003028 404 SYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA 483 (856)
Q Consensus 404 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~ 483 (856)
-+-..|++++|..+|+-+-..+ .-+..-|..|..+|-..+++++|...|......+. -|...+--+-.+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3445677777777777665543 23344455555556666777777777766554432 234444455666677777777
Q ss_pred HHHHHHHHHH
Q 003028 484 AHQLFCEMVN 493 (856)
Q Consensus 484 A~~lf~~m~~ 493 (856)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777776665
No 239
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.58 E-value=18 Score=35.55 Aligned_cols=134 Identities=18% Similarity=0.198 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 003028 416 DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG 495 (856)
Q Consensus 416 ~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g 495 (856)
++++.+.+.+++|+...|..+++.+.+.|++.... .++..++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 34444455566666666666666666666654333 33334444444444333322222 122233333333321
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 496 CIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 496 ~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
=...+..+++.+...|++-+|+++.+..... +......++++..+.+|...-..++.-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0013555666666777777777666654221 111223455555566665555555555444
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=89.42 E-value=8.9 Score=37.41 Aligned_cols=87 Identities=15% Similarity=0.017 Sum_probs=49.2
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 003028 475 LGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEA 554 (856)
Q Consensus 475 y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A 554 (856)
+-..|++++|..+|.-+.-.+.. +..-|..|...+-..+++++|+..|......+. -|...+-..-.++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 44566777777777666554332 444455566666666667777766665544322 1222233345556666666666
Q ss_pred HHHHHHHHH
Q 003028 555 EAVFAEMRR 563 (856)
Q Consensus 555 ~~l~~~m~~ 563 (856)
+..|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666655
No 241
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.38 E-value=34 Score=36.71 Aligned_cols=121 Identities=12% Similarity=0.120 Sum_probs=56.2
Q ss_pred hChhHHHHHHHHHHHhC-CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCCH-----HH
Q 003028 338 QDHTVALGFFNWLRRQA-GFKHDE------HTYTTMVGILGRARQFGAINKLLDQMVRD--------GCQPNV-----VT 397 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~-g~~pd~------~~y~~Li~~~~k~g~~~~A~~lf~~m~~~--------g~~pd~-----~t 397 (856)
++.+.|..++..+.... ...|+. ..||.-...+.+..+++.|...+++..+- ...++. .+
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~i 86 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSI 86 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHH
Confidence 46666777777665433 233332 23444444443333666665555443321 111222 23
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 398 YNRLIHSYGRANYLN---EALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 398 y~~Li~~~~~~g~~~---~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~ 459 (856)
+..|+.+|...+..+ +|..+++.+.... .-...+|..-+..+.+.++.+.+.+++.+|+..
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 445555555555432 3444444443321 112334444455555555666666666666554
No 242
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.24 E-value=7 Score=46.90 Aligned_cols=245 Identities=12% Similarity=0.106 Sum_probs=144.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHS----YGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~----~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
....-|+++.+...++-|..+-+. .+ .|..+...+... +.+.|++++|...|-+-... +.|. .+|
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 456788899999999999887543 22 355555444444 45679999999888765532 2332 356
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQ 517 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~ 517 (856)
.-|.......+-..+++.+.+.|+. +...-+.||.+|.+.++.+.-.++.+.-. .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 6667777778888888999988875 66677889999999999988877776654 2211 112344566677777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 518 SALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 518 ~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
+|..+-..... +... +.-.+-..+++++|.+.++.+.-...-+....|...+- ....++-..++-+..
T Consensus 481 ~a~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll----~h~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWV---LDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILL----EHDPEETMKILIELI 548 (933)
T ss_pred HHHHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hhChHHHHHHHHHHH
Confidence 77665544332 2222 22334466889999998876532222222222322221 234445444444444
Q ss_pred HcCCCCCHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHH
Q 003028 598 QAGLRPNVPTCNSLL-----SAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 598 ~~g~~pd~~t~n~Li-----~ay~~~g~~e~A~~l~~~M~~ 633 (856)
....++........+ ..+.-.++++....++..|.+
T Consensus 549 t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E 589 (933)
T KOG2114|consen 549 TELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSE 589 (933)
T ss_pred hhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHh
Confidence 322222222222222 222345567777777776775
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.82 E-value=29 Score=36.00 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 376 FGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQM 421 (856)
Q Consensus 376 ~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m 421 (856)
++.|.-+..+|.+. .--+..|+.-...|..+|..+-|-..+++.
T Consensus 74 yEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 74 YEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 44555555555442 112334555566666677666666655554
No 244
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=88.21 E-value=40 Score=36.08 Aligned_cols=71 Identities=27% Similarity=0.264 Sum_probs=35.6
Q ss_pred CChHHHHHHHH-HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 549 GYLDEAEAVFA-EMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWY-EAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAY 625 (856)
Q Consensus 549 g~~~~A~~l~~-~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~-~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~ 625 (856)
..+++.....+ +|++.+ -|+..+...+-++......+.+-.++. +... ....+|..|+.+|+..|+.+-.+
T Consensus 269 ~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qal-----rhlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 269 DPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQAL-----RHLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred CCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHH-----HHHHhhhHHHHHHhcCChHHHHH
Confidence 34444444444 344433 456554433333333344443322222 1111 13456888899999988877554
No 245
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.06 E-value=65 Score=38.34 Aligned_cols=185 Identities=14% Similarity=0.121 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC--
Q 003028 340 HTVALGFFNWLRRQAGFKHDEHTYTTMVGI-LGRARQFGAINKLLDQMVR-------DGCQPNVVTYNRLIHSYGRAN-- 409 (856)
Q Consensus 340 ~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~-~~k~g~~~~A~~lf~~m~~-------~g~~pd~~ty~~Li~~~~~~g-- 409 (856)
...|+++++.........+-...-.....+ ++...+++.|...|....+ .| +.....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 345666666665432221111111122223 4566789999999988876 44 2334556666676643
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--ccCCHHH
Q 003028 410 ---YLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK-AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG--KAGHLQA 483 (856)
Q Consensus 410 ---~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k-~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~--k~g~~~~ 483 (856)
+.+.|+.+|.+.-+.| .|+...+-..+..... ..+...|.++|...-..|.. +...+.+++.... -..+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 6677999998888777 4555444333332222 24678899999988888753 2222222222222 3346888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003028 484 AHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGF 531 (856)
Q Consensus 484 A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi 531 (856)
|..++++..+.|.. ...--...+..+.. +.++.+.-.+..+...|.
T Consensus 383 A~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 383 AFAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 88888888887622 21111222333333 777777777776666554
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.06 E-value=37 Score=35.56 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHhh--hChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 325 MDAYQANQVLKQL--QDHTVALGFFNWLRRQAGFKH-DEHTYTTMVGILGRARQFGAINKLLDQMVRD 389 (856)
Q Consensus 325 ~~~~~~~~vL~~l--~~~~~Al~~f~~m~~~~g~~p-d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~ 389 (856)
|-...++.-+..+ ++++.|...|+.+..++.+.| ...+--.++.++-+.++++.|...+++..+.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3344555556555 466777777777766555443 2334445556666677777777777766654
No 247
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.88 E-value=29 Score=41.81 Aligned_cols=43 Identities=7% Similarity=0.134 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRA 408 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~ 408 (856)
.+|-.|.++|++++|.++..+... .+......+-..+..|+..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 567778889999999888854443 2344555667777777665
No 248
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.37 E-value=52 Score=36.49 Aligned_cols=310 Identities=15% Similarity=0.124 Sum_probs=191.6
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILG--RARQFGAINKLLDQMVRDGCQPNVVTYNRLIHS--YGRANYLNE 413 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~--k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~--~~~~g~~~~ 413 (856)
.....+...|..-++..| |..|-.++. -.|+-..|.++-.+-.+. +.-|....-.|+.+ -.-.|+++.
T Consensus 67 ~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~ 138 (531)
T COG3898 67 ESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYED 138 (531)
T ss_pred hCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHH
Confidence 455566667766665444 445544443 457777787776554422 23355555555543 345799999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003028 414 ALDVFKQMQVVGCEPDRVTYCT----LIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFC 489 (856)
Q Consensus 414 A~~lf~~m~~~g~~pd~~ty~~----Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~ 489 (856)
|.+-|+.|.. |+.|-.. |.-.--+.|+.+.|.++-+..-+.- +--...+.+++...|..|+++.|+++++
T Consensus 139 Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 139 ARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred HHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 9999999974 3333332 2233346788899988888776542 2235678889999999999999999999
Q ss_pred HHHHcC-CCCCHH--HHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 003028 490 EMVNQG-CIPNLV--TYNIMIALQAK---ARNYQSALKLYRDMQNAGFEPDKV-TYSIVMEVLGHCGYLDEAEAVFAEMR 562 (856)
Q Consensus 490 ~m~~~g-~~pd~~--ty~~Li~~~~~---~g~~~~A~~ll~~M~~~gi~pd~~-ty~~ll~a~~~~g~~~~A~~l~~~m~ 562 (856)
.-.... +.+++. .-..|+.+-.. .-+...|.+.-.+.. .+.||.. .-.....++.+.|++.++-.+++.+-
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 766543 334433 22233333221 223444444433333 3566633 33345567899999999999999988
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003028 563 RKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ-AGLRP-NVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 563 ~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~-~g~~p-d~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~ 640 (856)
+....| .+... ..+.+.|+.. ..-+++... ..++| |..+--.+..+-...|++..|..--+.... ..|..
T Consensus 291 K~ePHP--~ia~l--Y~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pre 362 (531)
T COG3898 291 KAEPHP--DIALL--YVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRE 362 (531)
T ss_pred hcCCCh--HHHHH--HHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchh
Confidence 765444 43333 3345666543 222222221 01233 566777788888889999888877666654 67888
Q ss_pred HHHHHHHHH-HHhcCCcchHHHHHHHHHHcCC
Q 003028 641 QTYTLLLSC-CTEARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 641 ~ty~~Ll~a-~~~~g~~~~a~~l~~~m~~~g~ 671 (856)
..|..|.+. -++.|+-.++.+.+..-.+.-.
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 888877775 4556877777776666555433
No 249
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=87.37 E-value=22 Score=33.31 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003028 466 FTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGF 531 (856)
Q Consensus 466 ~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi 531 (856)
......++.+.+.|+-|.-.+++.++.+. -.++....-.+..+|.+.|+..++-+++.+.-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444455555555555555555555431 224445555555566666666666666665555554
No 250
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.27 E-value=8.7 Score=42.57 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=42.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc-----CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003028 368 GILGRARQFGAINKLLDQMVRD-----GC---------QPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTY 433 (856)
Q Consensus 368 ~~~~k~g~~~~A~~lf~~m~~~-----g~---------~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty 433 (856)
+.|.+.|++..|..-|+..... +. ..-..+++.|..+|.+.+++.+|+..-.+.+..+ +.|.-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3455666666666665554321 00 0112234444455555555555555555554443 3344444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 434 CTLIDIHAKAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 434 ~~Ll~~~~k~g~~~~A~~l~~~m~~ 458 (856)
----.+|...|+++.|+..|+++++
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4444444555555555555555544
No 251
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.04 E-value=5.5 Score=42.49 Aligned_cols=78 Identities=13% Similarity=0.216 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 003028 466 FTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQN-----AGFEPDKVTYSI 540 (856)
Q Consensus 466 ~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~-----~gi~pd~~ty~~ 540 (856)
.++..++..+..+|+++.+...++++...... +...|..||.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45667778888888888888888888876433 777888888888888888888888887754 577777666555
Q ss_pred HHHH
Q 003028 541 VMEV 544 (856)
Q Consensus 541 ll~a 544 (856)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.95 E-value=24 Score=37.71 Aligned_cols=142 Identities=15% Similarity=0.139 Sum_probs=70.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 369 ILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDV 448 (856)
Q Consensus 369 ~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~ 448 (856)
.....|++.+|..+|+...... +-+...--.|..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456677777777777666542 123444555667777777777777777766543211111222223344444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcC
Q 003028 449 AMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ--GCIPNLVTYNIMIALQAKAR 514 (856)
Q Consensus 449 A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~--g~~pd~~ty~~Li~~~~~~g 514 (856)
...+-.++-.. +-|...-..+...|...|+.++|.+.+-.+... |.. |...-..|+..+.-.|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 44444433332 224455555556666666666666555544432 222 3333444444444444
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.81 E-value=48 Score=35.49 Aligned_cols=143 Identities=15% Similarity=0.147 Sum_probs=82.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003028 404 SYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA 483 (856)
Q Consensus 404 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~ 483 (856)
.....+++.+|..+|....... .-+...--.|..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4466788888888888876653 334455667778888888888888888876543211112222223344444444444
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCh
Q 003028 484 AHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNA--GFEPDKVTYSIVMEVLGHCGYL 551 (856)
Q Consensus 484 A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~--gi~pd~~ty~~ll~a~~~~g~~ 551 (856)
...+-.+.-.. | |...-..+...|...|+.++|++.+-.+... |.. |...-..|++.+.-.|..
T Consensus 222 ~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 222 IQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPA 288 (304)
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCC
Confidence 44444444332 3 5555566777777788888877766655443 322 233444555555544433
No 254
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.68 E-value=11 Score=41.89 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=72.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003028 402 IHSYGRANYLNEALDVFKQMQVV-----GCE---------PDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFT 467 (856)
Q Consensus 402 i~~~~~~g~~~~A~~lf~~m~~~-----g~~---------pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t 467 (856)
-+.|.+.|++..|...|++.... +.. .-..+++.|.-+|.+.+++..|++.-...+..+ +.|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 35678889999999888875432 111 113345666666777777777777777666653 345555
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 003028 468 YSVIINCLGKAGHLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQS-ALKLYRDMQ 527 (856)
Q Consensus 468 y~~Li~~y~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~-A~~ll~~M~ 527 (856)
.----.+|...|+++.|+..|..+.+. .| |-..-+.|+...-+.....+ ..++|..|.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555566667777777777777777664 23 33333344444444333333 355666554
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=86.27 E-value=73 Score=37.04 Aligned_cols=162 Identities=13% Similarity=0.103 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC-----HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVG-CEPD-----RVTYCTLIDIHAK----AGFLDVAMDMYKKMQAAGLSPDTFT 467 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g-~~pd-----~~ty~~Ll~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~t 467 (856)
+..++....-.|+-+.+++++.+-.+.+ +.-. ...|+.++..++. ....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3455666666788888888887765432 1111 1234444444443 34677788888888765 456655
Q ss_pred HHHH-HHHHHccCCHHHHHHHHHHHHHcC-CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 468 YSVI-INCLGKAGHLQAAHQLFCEMVNQG-CI--PNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVME 543 (856)
Q Consensus 468 y~~L-i~~y~k~g~~~~A~~lf~~m~~~g-~~--pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~ 543 (856)
|... -..+...|++++|.+.|+...... -- .....+--+.-.+.-..+|++|.+.|..+.+..- -+..+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 5443 355667788888888888654310 00 1222333345556777888888888888876532 23444444444
Q ss_pred HH-HhcCCh-------HHHHHHHHHHH
Q 003028 544 VL-GHCGYL-------DEAEAVFAEMR 562 (856)
Q Consensus 544 a~-~~~g~~-------~~A~~l~~~m~ 562 (856)
+| ...|+. ++|.++|.++.
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33 344666 67777777654
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.27 E-value=45 Score=34.68 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK 477 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k 477 (856)
|..-..+|...+++++|...+.+..+ +.+-+...|. ....++.|.-+.++|.+. +--+..|+-...+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 44444566666777777776655542 1122222221 123345555555555442 2223455666667777
Q ss_pred cCCHHHHHHHHHHH
Q 003028 478 AGHLQAAHQLFCEM 491 (856)
Q Consensus 478 ~g~~~~A~~lf~~m 491 (856)
+|..+.|-..+++.
T Consensus 104 ~GspdtAAmaleKA 117 (308)
T KOG1585|consen 104 CGSPDTAAMALEKA 117 (308)
T ss_pred hCCcchHHHHHHHH
Confidence 77777666665544
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.14 E-value=12 Score=40.40 Aligned_cols=116 Identities=13% Similarity=0.051 Sum_probs=55.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHHcCCHH
Q 003028 442 KAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTY----NIMIALQAKARNYQ 517 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty----~~Li~~~~~~g~~~ 517 (856)
..|.+.+|-..++++.+. .+.|...++-.=.+|.-.|+.+.-...++++... ..+|...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345566666666666554 4445555555555566666655555555555432 11222211 12223334455556
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003028 518 SALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAE 560 (856)
Q Consensus 518 ~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~ 560 (856)
+|.+.-++..+.+ +.|.-.-.++...+--.|+..++.++..+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 6655555544332 22333333444444445555555555443
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.63 E-value=13 Score=39.17 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-CHhhHHHHH
Q 003028 502 TYNIMIALQAKARNYQSALKLYRDMQNAGFEP--DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWV-P-DEPVYGLLV 577 (856)
Q Consensus 502 ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~p--d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~-p-d~~~y~~Li 577 (856)
.|+.-+.. .+.|++.+|...|....+....- ....+-.|.+++...|+++.|..+|..+.+.-.. | -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 34443333 23444555555555555432110 0112334555555555555555555555542110 1 112333334
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 003028 578 DLWGKAGNVRKAWEWYEAMLQ 598 (856)
Q Consensus 578 ~~~~k~g~~~~A~~l~~~m~~ 598 (856)
....+.|+.++|..+|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 444455555555555555544
No 259
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=84.74 E-value=77 Score=35.96 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----
Q 003028 531 FEPDKVTYSIVMEVLGHC--GYLDEAEAVFAEMRRKNWVPDE-PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRP---- 603 (856)
Q Consensus 531 i~pd~~ty~~ll~a~~~~--g~~~~A~~l~~~m~~~g~~pd~-~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~p---- 603 (856)
+-|....+..++....-. .++.--.++++.....-+.|+- -+...|+..+.+ +.+++..+.+.+....+.+
T Consensus 219 ~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~ 296 (549)
T PF07079_consen 219 FIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEE 296 (549)
T ss_pred hCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHH
Confidence 445555556666555433 2334444555555444444442 222333333333 5566666666555432111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 604 NVPTCNSLLSAFLRVGQLSDAYHLLQGML 632 (856)
Q Consensus 604 d~~t~n~Li~ay~~~g~~e~A~~l~~~M~ 632 (856)
=+.++..++....+.++..+|-..+.-+.
T Consensus 297 li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 297 LIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 12345555666666666666666655444
No 260
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.64 E-value=8.5 Score=41.06 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 003028 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN-----LGLKPSLQTYTL 645 (856)
Q Consensus 571 ~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~-----~g~~Pd~~ty~~ 645 (856)
.++..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356777888888888888888888888753 55778888888888888888888888887764 678888877766
Q ss_pred HHHH
Q 003028 646 LLSC 649 (856)
Q Consensus 646 Ll~a 649 (856)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6665
No 261
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.70 E-value=62 Score=34.05 Aligned_cols=170 Identities=11% Similarity=0.094 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCC--CCHHHHHHHHHHHHhcCCh
Q 003028 480 HLQAAHQLFCEMVNQGCIPNLV---TYNIMIALQAKARNYQSALKLYRDMQN---AGFE--PDKVTYSIVMEVLGHCGYL 551 (856)
Q Consensus 480 ~~~~A~~lf~~m~~~g~~pd~~---ty~~Li~~~~~~g~~~~A~~ll~~M~~---~gi~--pd~~ty~~ll~a~~~~g~~ 551 (856)
++++|..-|.+..+........ ..-.+|..+.+.+++++.++.|.+|.. ..+. -+....++++.......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 5666666666655432111222 223456677777777777777776642 1111 2344566777766666666
Q ss_pred HHHHHHHHHHHH----c-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHH
Q 003028 552 DEAEAVFAEMRR----K-NWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLR-----------PNVPTCNSLLSAF 615 (856)
Q Consensus 552 ~~A~~l~~~m~~----~-g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~-----------pd~~t~n~Li~ay 615 (856)
+....+++.-.. . +-..-..|-+-|-..|...+++.+..+++.++...-.. .=...|..=|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 555555443321 1 11222234455666677777788888888777642111 1134677778888
Q ss_pred HHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 003028 616 LRVGQLSDAYHLLQGMLNL-GLKPSLQTYTLLLSCC 650 (856)
Q Consensus 616 ~~~g~~e~A~~l~~~M~~~-g~~Pd~~ty~~Ll~a~ 650 (856)
....+-.+-..++++.+.- .--|.... ..+|+-|
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIREC 236 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIREC 236 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHc
Confidence 8888777777778777652 23344333 3344444
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=83.47 E-value=63 Score=33.94 Aligned_cols=172 Identities=12% Similarity=0.043 Sum_probs=85.7
Q ss_pred HccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----
Q 003028 476 GKAGHLQAAHQLFCEMVNQGCI--PNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHC----- 548 (856)
Q Consensus 476 ~k~g~~~~A~~lf~~m~~~g~~--pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~----- 548 (856)
.+.|++++|.+.|+.+..+..- -...+--.++.++.+.+++++|+..+++....-..-....|..-|.+++..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 4557777777777777654211 123344455666777777777777777766543222223444445544422
Q ss_pred --CChH---HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 549 --GYLD---EAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSD 623 (856)
Q Consensus 549 --g~~~---~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~ 623 (856)
.+.. .|..-|+++... |=...-...|......+.+. =...=..+..-|.+.|.+..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~r---------------yPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQR---------------YPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHH---------------CCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChHH
Confidence 1222 222223333321 11111112222222111110 00001245567788888888
Q ss_pred HHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCcchHHHHHHHHH
Q 003028 624 AYHLLQGMLNLGLKPSL---QTYTLLLSCCTEARSPYDMGFCHELMA 667 (856)
Q Consensus 624 A~~l~~~M~~~g~~Pd~---~ty~~Ll~a~~~~g~~~~a~~l~~~m~ 667 (856)
|..-+++|++. ..-+. ..+..+..+|...|-.++|...-+.+.
T Consensus 186 A~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 186 AINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 88888888874 22222 345555666777777666665544443
No 263
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=83.06 E-value=1.1e+02 Score=36.46 Aligned_cols=110 Identities=8% Similarity=0.072 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDGC--QPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g~--~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
..|..+.+.|++-...+++..--. +. ..-...|+.+-..++....|++|.+.|..-.. -...+.++.+
T Consensus 765 LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~ 834 (1189)
T KOG2041|consen 765 LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYR 834 (1189)
T ss_pred hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHH
Confidence 445666666666665555432100 00 00133566666666666666666666654321 1123444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFC 489 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~ 489 (856)
..++++-+.+... ++.|....-.+..++.+.|.-++|.+.|-
T Consensus 835 le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 835 LELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 4444444333332 23344445555566666666665555543
No 264
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.05 E-value=46 Score=32.81 Aligned_cols=132 Identities=12% Similarity=0.124 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH--H
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVT-YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRV-TYCTL--I 437 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~t-y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~-ty~~L--l 437 (856)
.|..-++. ...+..++|..-|.++.+.|..--++. .-.......+.|+...|...|+++-...-.|-.. -..-| .
T Consensus 61 ~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 44444443 455666777777777776654322211 1112233456677777777777765432222221 01111 1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
-.+...|.++.+....+-+-..+-+.-...-.+|--+-.+.|++.+|.+.|..+.+.
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 123455666666666665554444444444455666666777777777777776653
No 265
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=82.83 E-value=92 Score=35.38 Aligned_cols=141 Identities=11% Similarity=0.054 Sum_probs=75.8
Q ss_pred HHHhhhChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HH
Q 003028 333 VLKQLQDHTVALGFFNWLRRQAGFKHD----EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHS--YG 406 (856)
Q Consensus 333 vL~~l~~~~~Al~~f~~m~~~~g~~pd----~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~--~~ 406 (856)
+|+.-++..+|-++|..+-+...-.|. ...-+-+|++|.. .+++.....+.++.+. .| ...|-.|..+ +-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 345556777788887777543221111 2234456666653 3566666666666543 12 2223333322 24
Q ss_pred hcCCHHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHH
Q 003028 407 RANYLNEALDVFKQMQVV--GCEP------------DRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAG----LSPDTFTY 468 (856)
Q Consensus 407 ~~g~~~~A~~lf~~m~~~--g~~p------------d~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g----~~pd~~ty 468 (856)
+.+.+.+|++.+..-... +-.+ |-..=+..+..+...|.+.++..++++++..= ..-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 667788888877666543 2222 12222445566667777777777766665442 23566666
Q ss_pred HHHHHHHHc
Q 003028 469 SVIINCLGK 477 (856)
Q Consensus 469 ~~Li~~y~k 477 (856)
+.++-++++
T Consensus 171 d~~vlmlsr 179 (549)
T PF07079_consen 171 DRAVLMLSR 179 (549)
T ss_pred HHHHHHHhH
Confidence 665555544
No 266
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.64 E-value=67 Score=34.35 Aligned_cols=70 Identities=19% Similarity=0.123 Sum_probs=43.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCHHHH
Q 003028 468 YSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQ-----NAGFEPDKVTY 538 (856)
Q Consensus 468 y~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~-----~~gi~pd~~ty 538 (856)
++.....|.++|.+.+|.++.+...... +.+...|-.|+..++..|+--.|.+-|+.|. +.|+..|...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3444566777777777777777666542 2356666777777777777666666666553 23665554433
No 267
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=81.94 E-value=1e+02 Score=35.42 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=34.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 469 SVIINCLGKAGHLQAAHQLFCEMVNQGCI-PNLVTYNIMIALQAKARNYQSALKLYRDMQN 528 (856)
Q Consensus 469 ~~Li~~y~k~g~~~~A~~lf~~m~~~g~~-pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 528 (856)
..|..++-+.|+.++|.+.|.+|.+.... -.......|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555555667777777777666543211 1223445566677777777777666666543
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=81.50 E-value=36 Score=32.48 Aligned_cols=73 Identities=11% Similarity=0.044 Sum_probs=45.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 370 LGRARQFGAINKLLDQMVRDGCQP---NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKA 443 (856)
Q Consensus 370 ~~k~g~~~~A~~lf~~m~~~g~~p---d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~ 443 (856)
..+.|++++|.+.|+.+..+ .+- ....--.|+.+|.+.+++++|...+++..+.....-.+-|...+.+++..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34677777777777777665 211 23344556777777777777777777777654333334555555555543
No 269
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.47 E-value=57 Score=32.08 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=11.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 003028 468 YSVIINCLGKAGHLQAAHQLFCE 490 (856)
Q Consensus 468 y~~Li~~y~k~g~~~~A~~lf~~ 490 (856)
+..++..+...|++-+|.++...
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 33444455555555555555544
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=81.01 E-value=38 Score=31.75 Aligned_cols=91 Identities=16% Similarity=0.131 Sum_probs=47.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCC
Q 003028 369 ILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVT---YCTLIDIHAKAGF 445 (856)
Q Consensus 369 ~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t---y~~Ll~~~~k~g~ 445 (856)
++...|+++.|++.|.+.... ++-....||.-..++.-.|+.++|++=+++..+..-...... |.---..|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 455666677777666666543 233556666666666666666666666666654321222211 2222233444455
Q ss_pred HHHHHHHHHHHHHCC
Q 003028 446 LDVAMDMYKKMQAAG 460 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g 460 (856)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555544443
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.93 E-value=89 Score=34.05 Aligned_cols=114 Identities=9% Similarity=0.035 Sum_probs=49.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHHcCCHHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYC----TLIDIHAKAGFLDV 448 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~----~Ll~~~~k~g~~~~ 448 (856)
.|.+.+|-..++++.+. .+.|...++..=.+|.-+|+.+.-...++++... ..+|...|. .+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34444555555555443 2334444444445555555555555555544321 012221111 11222234455555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003028 449 AMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFC 489 (856)
Q Consensus 449 A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~ 489 (856)
|++.-++..+.+ +-|.-.-.++.+.+-..|++.++.++..
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 555554444432 2234444444444444555555544443
No 272
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=80.79 E-value=40 Score=31.63 Aligned_cols=90 Identities=14% Similarity=0.037 Sum_probs=53.6
Q ss_pred HHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCC
Q 003028 334 LKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYN---RLIHSYGRANY 410 (856)
Q Consensus 334 L~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~---~Li~~~~~~g~ 410 (856)
+..-++.+.|++.|.....-. +-....||.-..++.-.|+.++|+.=+++..+..-..+..... .--..|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 334467777777777665422 2344577777777777777777777777666532122222222 22234556677
Q ss_pred HHHHHHHHHHHHHcC
Q 003028 411 LNEALDVFKQMQVVG 425 (856)
Q Consensus 411 ~~~A~~lf~~m~~~g 425 (856)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766655
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=80.66 E-value=3.2 Score=29.19 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHh
Q 003028 713 VDAVVDFLHKSGLKEEAGSVWEVAAQ 738 (856)
Q Consensus 713 ~~aLi~~y~k~G~~eeA~~lf~~m~~ 738 (856)
|..|.+.|.+.|++++|+++|++...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999653
No 274
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=80.20 E-value=1e+02 Score=35.52 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=32.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 541 VMEVLGHCGYLDEAEAVFAEMRRKNWV-PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ 598 (856)
Q Consensus 541 ll~a~~~~g~~~~A~~l~~~m~~~g~~-pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~ 598 (856)
+..++-+.|+.++|.+.+.+|.+.... -...+...|+.++...+.+.++..++.+-.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 334444556666666666666543211 1233455666666666666666666666543
No 275
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=78.80 E-value=42 Score=32.05 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=24.1
Q ss_pred hcCChHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 547 HCGYLDEAEAVFAEMRRKNW--VPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ 598 (856)
Q Consensus 547 ~~g~~~~A~~l~~~m~~~g~--~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~ 598 (856)
+.|++++|.+.|+.+...-. .-.....-.|+.+|.+.+++++|...+++.++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44555555555555544310 11223344445555555555555555555544
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.80 E-value=20 Score=35.63 Aligned_cols=63 Identities=11% Similarity=0.132 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 466 FTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPN--LVTYNIMIALQAKARNYQSALKLYRDMQN 528 (856)
Q Consensus 466 ~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 528 (856)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455666777777777777777777666533222 23445566666667777776666665543
No 277
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.54 E-value=38 Score=35.79 Aligned_cols=97 Identities=14% Similarity=0.117 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGC--EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGL--SPDTFTYSVII 472 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~--~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~--~pd~~ty~~Li 472 (856)
.|+.-+..| +.|++.+|...|....+... .-....+-.|..++...|++++|..+|..+.+.-. +--+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355544433 34446666666666555320 11122344455666666666666666666655310 11124444455
Q ss_pred HHHHccCCHHHHHHHHHHHHHc
Q 003028 473 NCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 473 ~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5556666666666666666554
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=78.24 E-value=4.5 Score=28.46 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 607 TCNSLLSAFLRVGQLSDAYHLLQGML 632 (856)
Q Consensus 607 t~n~Li~ay~~~g~~e~A~~l~~~M~ 632 (856)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.08 E-value=22 Score=35.31 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 502 TYNIMIALQAKARNYQSALKLYRDMQNAGFEPD--KVTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 502 ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd--~~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
.+..+...|++.|+.++|++.|.++.+....+. ...+-.+|......+++..+.........
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566677777777777777777777766544433 22445566666666777776666665543
No 280
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=77.78 E-value=5.3 Score=29.48 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 607 TCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 607 t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+|..+...|.+.|++++|+++|+++++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555666666666666666666665
No 281
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.61 E-value=1.4e+02 Score=37.13 Aligned_cols=116 Identities=18% Similarity=0.123 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-CCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCHhhHH--
Q 003028 502 TYNIMIALQAKARNYQSALKLYRDMQNAG--FE-PDKVTYSIVMEVLGHCGYL--DEAEAVFAEMRRKNWVPDEPVYG-- 574 (856)
Q Consensus 502 ty~~Li~~~~~~g~~~~A~~ll~~M~~~g--i~-pd~~ty~~ll~a~~~~g~~--~~A~~l~~~m~~~g~~pd~~~y~-- 574 (856)
-|..|+..|...|+.++|+++|.+..+.. .. .-..-+-.++..+.+.+.. +...++-+...+........+++
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 37788888888888888888888876521 00 0011223355555555444 44444433333322111111111
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 575 ----------LLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR 617 (856)
Q Consensus 575 ----------~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~ 617 (856)
.-+-.|++....+-+..+++.+....-.++....+.++.-|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1234467777888889999998866556677888888888875
No 282
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.50 E-value=18 Score=38.84 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=66.6
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003028 389 DGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVV---GCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDT 465 (856)
Q Consensus 389 ~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~---g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~ 465 (856)
.|.+....+...++..--...+++++.+.+-+++.. -..|+. +-.+++..|.+. +.++++.++..-++-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllky-~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLKY-DPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHcc-ChHHHHHHHhCcchhccccch
Confidence 344445555566665555567777777777776532 112222 222333444333 566777777777778888888
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 466 FTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 466 ~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
++++.+|+.+.+.+++.+|.++.-.|..+
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888887777766643
No 283
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=76.54 E-value=63 Score=34.57 Aligned_cols=137 Identities=12% Similarity=0.093 Sum_probs=72.0
Q ss_pred cCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 373 ARQFGAINKLLDQMVR-DGCQPNVVTYNRLIHSYGR-AN-YLNEALDVFKQMQ-VVGCEPDRVTYCTLIDIHAKAGFLDV 448 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~-~g~~pd~~ty~~Li~~~~~-~g-~~~~A~~lf~~m~-~~g~~pd~~ty~~Ll~~~~k~g~~~~ 448 (856)
+..+.+|+.+|+..-- ..+--|..+-..|++.... .+ ....-.++.+-+. ..+-.++..+...+|..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3345556666653211 1233455555555555544 11 1122222222222 22345666666777777777777777
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHH
Q 003028 449 AMDMYKKMQAA-GLSPDTFTYSVIINCLGKAGHLQAAHQLFCE-----MVNQGCIPNLVTYNIMIAL 509 (856)
Q Consensus 449 A~~l~~~m~~~-g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~-----m~~~g~~pd~~ty~~Li~~ 509 (856)
..++++..... +..-|...|..+|+...+.|+..-..++.++ +...++..+...-..|-..
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 77777666554 4455667777777777777777666666553 2233444444444444333
No 284
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=76.29 E-value=66 Score=35.36 Aligned_cols=23 Identities=22% Similarity=0.089 Sum_probs=10.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 003028 572 VYGLLVDLWGKAGNVRKAWEWYE 594 (856)
Q Consensus 572 ~y~~Li~~~~k~g~~~~A~~l~~ 594 (856)
+|-.|-..|.+..|+++|.-+..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhH
Confidence 44444444555555554444433
No 285
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.55 E-value=18 Score=41.93 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=20.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003028 442 KAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEM 491 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m 491 (856)
+.|+++.|.++..+.. +..-|..|-++..+.|++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4455555544443321 3344555555555555555555544443
No 286
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.54 E-value=92 Score=32.31 Aligned_cols=20 Identities=10% Similarity=0.258 Sum_probs=12.4
Q ss_pred HhcCChHHHHHHHHHHHHcC
Q 003028 546 GHCGYLDEAEAVFAEMRRKN 565 (856)
Q Consensus 546 ~~~g~~~~A~~l~~~m~~~g 565 (856)
+..+++.+|..+|+++....
T Consensus 165 a~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44566667777777666543
No 287
>PRK11906 transcriptional regulator; Provisional
Probab=75.40 E-value=1.2e+02 Score=34.61 Aligned_cols=145 Identities=12% Similarity=0.045 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003028 340 HTVALGFFNWLRRQAGFKHDE-HTYTTMVGILGR---------ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN 409 (856)
Q Consensus 340 ~~~Al~~f~~m~~~~g~~pd~-~~y~~Li~~~~k---------~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g 409 (856)
...|+.+|..........|+- ..|..+..++.. .....+|.++-+...+.+ +-|......+-....-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 457888888887444455552 233333222211 123344555555555543 235555555555556666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHH
Q 003028 410 YLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPD---TFTYSVIINCLGKAGHLQAAHQ 486 (856)
Q Consensus 410 ~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd---~~ty~~Li~~y~k~g~~~~A~~ 486 (856)
+++.|..+|++....+ +-...+|...-..+.-.|+.++|.+.+++..+. .|. .......++.|+..+ ++.|.+
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 6777777777776543 223344444444555567777777777775543 222 222333344555543 455555
Q ss_pred HHH
Q 003028 487 LFC 489 (856)
Q Consensus 487 lf~ 489 (856)
++.
T Consensus 429 ~~~ 431 (458)
T PRK11906 429 LYY 431 (458)
T ss_pred HHh
Confidence 554
No 288
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=75.20 E-value=7.5 Score=28.64 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=8.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 003028 366 MVGILGRARQFGAINKLLDQMV 387 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~ 387 (856)
+...|...|++++|.++|++..
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333344444444443333
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=74.82 E-value=1.4e+02 Score=32.76 Aligned_cols=65 Identities=20% Similarity=0.113 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 499 NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEP---DKVTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 499 d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~p---d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
...+|..++..+.+.|.++.|...+..+...+... +......-++.+-..|+..+|...+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33456666666666666666666666665533111 122223334444555666666666666555
No 290
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=74.72 E-value=6.9 Score=26.73 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 606 PTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 606 ~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4567777777777777777777777776
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.74 E-value=93 Score=30.36 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=8.2
Q ss_pred HccCCHHHHHHHHHHHHH
Q 003028 476 GKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 476 ~k~g~~~~A~~lf~~m~~ 493 (856)
...|++++|.++|+++.+
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 344444444444444433
No 292
>PRK11906 transcriptional regulator; Provisional
Probab=73.10 E-value=1.4e+02 Score=34.24 Aligned_cols=115 Identities=11% Similarity=0.058 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 375 QFGAINKLLDQMVR-DGCQPN-VVTYNRLIHSYGR---------ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKA 443 (856)
Q Consensus 375 ~~~~A~~lf~~m~~-~g~~pd-~~ty~~Li~~~~~---------~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~ 443 (856)
..+.|..+|.+... ..+.|+ ...|..+-.++.. .....+|.++.++..+.+ .-|......+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 45678888888871 123444 3344444333321 123445555555555554 44555555555555556
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003028 444 GFLDVAMDMYKKMQAAGLSPD-TFTYSVIINCLGKAGHLQAAHQLFCEMV 492 (856)
Q Consensus 444 g~~~~A~~l~~~m~~~g~~pd-~~ty~~Li~~y~k~g~~~~A~~lf~~m~ 492 (856)
++++.|..+|++....+ || ..+|...-....-+|+.++|.+.+++-.
T Consensus 352 ~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred cchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666666666665542 22 2333333333444566666666666533
No 293
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=72.98 E-value=1.9e+02 Score=33.52 Aligned_cols=95 Identities=12% Similarity=0.167 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
|....-+++..++.+....-.+.+..+|..-| -+-..|-.++.+|..+ ..+.-..+++++.+..+ |.+...--+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 44445555666666665555666666665543 3455555566666555 44455555555554431 2222222222
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~ 458 (856)
-+...++.+.+..+|.+...
T Consensus 140 ~~yEkik~sk~a~~f~Ka~y 159 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHHhchhhHHHHHHHHHH
Confidence 22233555555555555544
No 294
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=72.50 E-value=1.7e+02 Score=32.76 Aligned_cols=284 Identities=14% Similarity=0.085 Sum_probs=176.8
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhcCCH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGI--LGRARQFGAINKLLDQMVRDGCQPNVVTYNR----LIHSYGRANYL 411 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~--~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~----Li~~~~~~g~~ 411 (856)
++-..|.++-....+ -+..|..-.-.|+.+ -.-.|+++.|.+-|+.|.. |+.|--. |.-..-+.|..
T Consensus 98 Gda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 98 GDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred CchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 455566655444331 123343333333332 2356999999999999986 3444333 33333567888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHHc---cCCHHHHH
Q 003028 412 NEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAG-LSPDTFT--YSVIINCLGK---AGHLQAAH 485 (856)
Q Consensus 412 ~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g-~~pd~~t--y~~Li~~y~k---~g~~~~A~ 485 (856)
+.|..+-+..-..- +.=...+...+...|..|+++.|+++++.-+... +.+++.- -..|+.+-.. ..+...|.
T Consensus 171 eaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 88888888776543 3345788899999999999999999998876543 3344322 2233332211 12344454
Q ss_pred HHHHHHHHcCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003028 486 QLFCEMVNQGCIPNLVTYNI-MIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK 564 (856)
Q Consensus 486 ~lf~~m~~~g~~pd~~ty~~-Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~ 564 (856)
..-.+-.+ +.||.+--.. -..++.+.|+..++-.+++.+-+....|+.. .+-...+.|+ .+..-++...+.
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHH
Confidence 44444333 4566554333 3478899999999999999999887666642 2223345554 333333333321
Q ss_pred -CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC
Q 003028 565 -NWVP-DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRV-GQLSDAYHLLQGMLNLGLKPS 639 (856)
Q Consensus 565 -g~~p-d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~-g~~e~A~~l~~~M~~~g~~Pd 639 (856)
.++| +......+..+-...|++..|..--+.... ..|....|-.|.+.-... |+-.++...+-+.++.--.|+
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 2233 455666777788888999888877766655 368888888777765544 899999888888876544443
No 295
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.21 E-value=2.4e+02 Score=34.55 Aligned_cols=143 Identities=15% Similarity=0.177 Sum_probs=87.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF 445 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~ 445 (856)
..+.+.+.|++++|..-|-+-... ++|. .+|.-|....+..+-..+++.+.+.|+. +...-..||.+|.+.++
T Consensus 374 Ygd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 374 YGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcc
Confidence 345556788888888777555432 2222 3466667777777777888888887754 44455678888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRD 525 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 525 (856)
.++-.++.+.-. .|.. .+-....+..+.+.+-+++|..+-..... .......+ +-..+++++|++++..
T Consensus 447 ~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 447 VEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred hHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 888776665543 2221 11234556666777777777666555433 22222332 3346677777777765
Q ss_pred H
Q 003028 526 M 526 (856)
Q Consensus 526 M 526 (856)
|
T Consensus 516 l 516 (933)
T KOG2114|consen 516 L 516 (933)
T ss_pred C
Confidence 4
No 296
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=72.20 E-value=7.9 Score=27.52 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 003028 711 GLVDAVVDFLHKSGLKEEAGSVWEVAAQ 738 (856)
Q Consensus 711 ~~~~aLi~~y~k~G~~eeA~~lf~~m~~ 738 (856)
.+++.|..+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678999999999999999999998764
No 297
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.53 E-value=54 Score=38.32 Aligned_cols=105 Identities=11% Similarity=0.061 Sum_probs=81.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF 445 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~ 445 (856)
-.....+.|+++.|.++..+. -+..-|..|-.+..+.+++..|.+.|.+... |..|+-++...|+
T Consensus 643 rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~ 707 (794)
T KOG0276|consen 643 RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGN 707 (794)
T ss_pred hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCC
Confidence 345566889999998876544 3677899999999999999999999988764 4567778888898
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEM 491 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m 491 (856)
.+....+-....+.|.. |....+|...|+++++.+++..-
T Consensus 708 ~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 708 AEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 88777777777777642 33345677789999998888664
No 298
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.51 E-value=2.6e+02 Score=34.09 Aligned_cols=55 Identities=9% Similarity=0.028 Sum_probs=31.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQP---NVVTYNRLIHSYGRANYLNEALDVFKQMQ 422 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~p---d~~ty~~Li~~~~~~g~~~~A~~lf~~m~ 422 (856)
-|+.+.+.+.+++|+.+-+..... .| -...+..+|..+.-.|++++|-...-+|.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 356666666666666655544322 22 23345566666666666666666666664
No 299
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.97 E-value=2.4e+02 Score=33.56 Aligned_cols=147 Identities=17% Similarity=0.173 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH----HH-HHhcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHc
Q 003028 376 FGAINKLLDQMVRDGCQPNVVTYNRLI----HS-YGRANYLNEALDVFKQMQV-------VGCEPDRVTYCTLIDIHAKA 443 (856)
Q Consensus 376 ~~~A~~lf~~m~~~g~~pd~~ty~~Li----~~-~~~~g~~~~A~~lf~~m~~-------~g~~pd~~ty~~Ll~~~~k~ 443 (856)
...|..+++...+.| +...-..+. .+ +....+.+.|+.+|+.+.+ .| +.....-+-.+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 566778887777765 233222222 22 4455688888888888765 33 333455555555553
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCC
Q 003028 444 G-----FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK-AGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQA--KARN 515 (856)
Q Consensus 444 g-----~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k-~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~--~~g~ 515 (856)
. +.+.|+.+|...-+.|. |+...+-..+..... ..+...|.++|...-+.|.. +..-+-+++.... ...+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCC
Confidence 2 45556666666666653 233333333333332 23456666666666665543 2222212111111 2234
Q ss_pred HHHHHHHHHHHHHcC
Q 003028 516 YQSALKLYRDMQNAG 530 (856)
Q Consensus 516 ~~~A~~ll~~M~~~g 530 (856)
...|..++++.-+.|
T Consensus 380 ~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHHHcc
Confidence 555666666555555
No 300
>PRK09687 putative lyase; Provisional
Probab=69.50 E-value=1.7e+02 Score=31.51 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=18.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003028 610 SLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCC 650 (856)
Q Consensus 610 ~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~ 650 (856)
..+.++...|.. +|+..+..+.+. .||...-...+.+|
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 444555555553 455555555542 23544444444444
No 301
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=69.36 E-value=90 Score=37.69 Aligned_cols=314 Identities=12% Similarity=0.087 Sum_probs=129.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003028 399 NRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF-------LDVAMDMYKKMQAAGLSPDTFTYSVI 471 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~-------~~~A~~l~~~m~~~g~~pd~~ty~~L 471 (856)
=.+|-.+.|+|++++|.++..+.... +......+...+..|....+ .++...-|.+..+.....|++=+ ++
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~-Av 192 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKR-AV 192 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHH-HH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHH-HH
Confidence 35778889999999999999666543 45555677788888876532 33555556655544332243211 11
Q ss_pred HHHHHccCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 472 INCLGKAGHLQAAH-QLFCEMVNQGCIPNLVTYNIMIALQAKARN-----------YQSALKLYRDMQNAGFEPDKVTYS 539 (856)
Q Consensus 472 i~~y~k~g~~~~A~-~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~-----------~~~A~~ll~~M~~~gi~pd~~ty~ 539 (856)
....++|.-.+.-. .+ ..++.-|--+=-.+.+... +++..+.+.+.-+.-+.++ ...-
T Consensus 193 Y~ilg~cD~~~~~~~~V---------~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~-~~p~ 262 (613)
T PF04097_consen 193 YKILGRCDLSRRHLPEV---------ARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNAG-SNPL 262 (613)
T ss_dssp HHHHHT--CCC-S-TTC-----------SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT------
T ss_pred HHHHhcCCccccchHHH---------hCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcccc-hhHH
Confidence 11112222100000 11 1112212111111111111 1222222222222323331 1112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH-
Q 003028 540 IVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG-LRPNVPTCNSLLSAFLR- 617 (856)
Q Consensus 540 ~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g-~~pd~~t~n~Li~ay~~- 617 (856)
.....+.-.|+++.|.+++-. ......|.+++...+.-|.-..-.+... ..+.... -.|...-+..||..|.+
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHH
Confidence 334555678999999988876 2234456666666555443222222211 2222110 01222557788888875
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH-HHhcCCcchHHHHHHHHHHcCCChHHHHHh--cCCCCC-CcccH
Q 003028 618 --VGQLSDAYHLLQGMLNLGLKPSL-QTYTLLLSC-CTEARSPYDMGFCHELMAVSGHPAHMFLLS--MPSPGP-DGQNV 690 (856)
Q Consensus 618 --~g~~e~A~~l~~~M~~~g~~Pd~-~ty~~Ll~a-~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~--l~~~~~-~~~~~ 690 (856)
..+..+|+++|--+....- |+. ..+...+.- ....++ ...++..+...|......+.. -+.... .....
T Consensus 338 F~~td~~~Al~Y~~li~~~~~-~~~~~l~~~~l~eLvletre---f~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~ 413 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLFKD-PEQRNLFHECLRELVLETRE---FDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFL 413 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS-S-CCHHHHHHHHHHHHHHHH-----HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHH
T ss_pred HhccCHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHccCC---HHHHCCCCCCCCccccceeeccccccCCCCcHHHH
Confidence 4578888888876654322 332 222222221 222221 222222223334333333332 000011 11112
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 003028 691 RDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQK 739 (856)
Q Consensus 691 ~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~ 739 (856)
.+.+...-+.....+ -+..-|..|.-.|+++.|++++.+....
T Consensus 414 ~~i~~~~A~~~e~~g------~~~dAi~Ly~La~~~d~vl~lln~~Ls~ 456 (613)
T PF04097_consen 414 REIIEQAAREAEERG------RFEDAILLYHLAEEYDKVLSLLNRLLSQ 456 (613)
T ss_dssp HHHHHHHHHHHHHCT-------HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC------CHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 222222233333332 2456678888899999999998876643
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=69.03 E-value=11 Score=25.45 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 607 TCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 607 t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456667777777777777777777765
No 303
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.26 E-value=54 Score=35.32 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 551 LDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAM 596 (856)
Q Consensus 551 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m 596 (856)
.+++..++..=.+.|+-||-.+++.+|+.+.+.+++.+|..+.-.|
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344444444444444444444444454444444444444444333
No 304
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=68.07 E-value=1.9e+02 Score=31.60 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=35.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 570 EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRP---NVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 570 ~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~p---d~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
..++..+...+.+.|.++.|...+..+....... .....-.-+..+-..|+.++|+..+++.+.
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666666666677776666666665432111 223333344555566666666666666555
No 305
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=68.06 E-value=2e+02 Score=31.85 Aligned_cols=129 Identities=16% Similarity=0.033 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHH
Q 003028 537 TYSIVMEVLGHCGYLDEAEAVFAEMRRK-NWVP---DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG-----LRPNVPT 607 (856)
Q Consensus 537 ty~~ll~a~~~~g~~~~A~~l~~~m~~~-g~~p---d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g-----~~pd~~t 607 (856)
.|..+..++-+..++.+++.+-+.-... |..+ .-....++-.++...+.++++++.|+.....- -......
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444445555545555555544433321 2222 12334456667777788888888888766421 1123456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHHHH-----HHHHHhcCCcchHHHHHHH
Q 003028 608 CNSLLSAFLRVGQLSDAYHLLQGMLN----LGLKPSLQTYTLL-----LSCCTEARSPYDMGFCHEL 665 (856)
Q Consensus 608 ~n~Li~ay~~~g~~e~A~~l~~~M~~----~g~~Pd~~ty~~L-----l~a~~~~g~~~~a~~l~~~ 665 (856)
|-.|-.-|.+..++++|.-+..+..+ .++.--..-|..+ .-++-..|.+-+|.+..++
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~E 231 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEE 231 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 88889999999999999888776654 2333222233322 2245556666666555543
No 306
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=67.96 E-value=3.1e+02 Score=34.00 Aligned_cols=224 Identities=14% Similarity=0.061 Sum_probs=121.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC----H---HHHHHHHH-HHHccCCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPD----T---FTYSVIIN-CLGKAGHLQAAHQLFCEMVNQ----GCIPNLVTYNIMI 507 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd----~---~ty~~Li~-~y~k~g~~~~A~~lf~~m~~~----g~~pd~~ty~~Li 507 (856)
.....++.+|..++.++...-..|+ . ..+++|-. .....|++++|.++-+..... -..+.++.+.++.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456789999999888765422222 1 23333322 233467888888887766543 2344677788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHH--HHHHhcCC--hHHHHHHHHHHHHcCC------CCCHhhHH
Q 003028 508 ALQAKARNYQSALKLYRDMQNAGFEPDKVTYS---IVM--EVLGHCGY--LDEAEAVFAEMRRKNW------VPDEPVYG 574 (856)
Q Consensus 508 ~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~---~ll--~a~~~~g~--~~~A~~l~~~m~~~g~------~pd~~~y~ 574 (856)
.+..-.|++++|..+..+..+.--.-+...|. .+. ..+...|+ ..+.+..|........ .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 89999999999999888766543233333332 222 23445563 3344444444433210 12234555
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHH
Q 003028 575 LLVDLWGKAG-NVRKAWEWYEAMLQAGLRPNVPTC--NSLLSAFLRVGQLSDAYHLLQGMLNLG----LKPSLQTYTLLL 647 (856)
Q Consensus 575 ~Li~~~~k~g-~~~~A~~l~~~m~~~g~~pd~~t~--n~Li~ay~~~g~~e~A~~l~~~M~~~g----~~Pd~~ty~~Ll 647 (856)
.+..++.+.. ...+|..-+.-.......|-...+ ..|+..+...|+.++|...++++.... ..++..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 5666665521 112222222222222212222222 267788889999999999999887632 334444444444
Q ss_pred HH--HHhcCCcchHHHHH
Q 003028 648 SC--CTEARSPYDMGFCH 663 (856)
Q Consensus 648 ~a--~~~~g~~~~a~~l~ 663 (856)
.. ....|+.+.+....
T Consensus 665 ~~~lwl~qg~~~~a~~~l 682 (894)
T COG2909 665 KLILWLAQGDKELAAEWL 682 (894)
T ss_pred hHHHhcccCCHHHHHHHH
Confidence 43 23445555444433
No 307
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.03 E-value=1.9e+02 Score=31.14 Aligned_cols=124 Identities=13% Similarity=0.123 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQV-VGCEPDRVTYCTLIDIHAK-AG-FLDVAMDMYKKMQAA-GLSPDTFTYSVIIN 473 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~-~g~~pd~~ty~~Ll~~~~k-~g-~~~~A~~l~~~m~~~-g~~pd~~ty~~Li~ 473 (856)
|..|+. ++..+.+|+.+|+.... ..+--|..+...+++.... .+ ....--++.+-+... |-.++..+...+|.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 554443 34456777777774322 2345566777777766665 22 222222333333322 34567777788888
Q ss_pred HHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQ-GCIPNLVTYNIMIALQAKARNYQSALKLYR 524 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~-g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 524 (856)
.+++.+++..-.++++..... +..-|...|..+|..-...|+..-...+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 888888888888888776654 455577788888888888888765555544
No 308
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=66.94 E-value=17 Score=30.92 Aligned_cols=71 Identities=30% Similarity=0.498 Sum_probs=42.1
Q ss_pred eccccccchhhHHHHHHHHHHHHHHHHHcCCCCCceeeeeeccccCCcccchHHHHHHHHHHhh-cCCCCc-------cc
Q 003028 756 INLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHM-FSFPFF-------TE 827 (856)
Q Consensus 756 ~~~~~l~~g~a~~g~~~~l~~~~~~m~~~g~~Pd~it~i~~l~~~~~~~~~~~l~~a~~~ll~~-~~~pf~-------~~ 827 (856)
+|+|.|....|... +..+.......+. ..+.+|+|.|.+|. .|.++.++..+|.. ...++. +.
T Consensus 1 iDLHG~~~~eA~~~----l~~~l~~~~~~~~--~~~~II~G~G~hS~---~g~Lk~~V~~~L~~~~~~~~v~~~~~~~~~ 71 (83)
T PF01713_consen 1 IDLHGLTVEEALRA----LEEFLDEARQRGI--RELRIITGKGNHSK---GGVLKRAVRRWLEEGYQYEEVLAYRDAEPE 71 (83)
T ss_dssp EE-TTS-HHHHHHH----HHHHHHHHHHTTH--SEEEEE--STCTCC---TSHHHHHHHHHHHHTHCCTTEEEEEE--CC
T ss_pred CCCCCCcHHHHHHH----HHHHHHHHHHcCC--CEEEEEeccCCCCC---CCcHHHHHHHHHHhhhccchhheeeecCCC
Confidence 35676665555433 3344455555554 77889999988876 44599999999965 123332 34
Q ss_pred CCCceEEE
Q 003028 828 NGNSGCFV 835 (856)
Q Consensus 828 ~~~~gc~v 835 (856)
..+.|+++
T Consensus 72 ~g~~G~~~ 79 (83)
T PF01713_consen 72 DGNSGATI 79 (83)
T ss_dssp CTGGGEEE
T ss_pred CCCCeEEE
Confidence 55778776
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=66.35 E-value=13 Score=26.29 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 605 VPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 605 ~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
..+++.|...|...|++++|..++++.++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888888888888888888887764
No 310
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=66.30 E-value=2.6e+02 Score=32.47 Aligned_cols=166 Identities=11% Similarity=0.096 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVII 472 (856)
Q Consensus 393 pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li 472 (856)
.|....-+++..+.++..+.-...+..+|...| -+-..|..++.+|... .-+.-..+++++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355666677777777777777777777777654 4566777777777776 556667777777766442 444444455
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 003028 473 NCLGKAGHLQAAHQLFCEMVNQGCIP--N---LVTYNIMIALQAKARNYQSALKLYRDMQNA-GFEPDKVTYSIVMEVLG 546 (856)
Q Consensus 473 ~~y~k~g~~~~A~~lf~~m~~~g~~p--d---~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~-gi~pd~~ty~~ll~a~~ 546 (856)
.-|-+ ++...+..+|......=++. + ...|.-|+..- ..+.+..+.+..+++.. |...-.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 54444 66677777776665431110 1 12344444321 33455555555555432 33333445555555666
Q ss_pred hcCChHHHHHHHHHHHHcC
Q 003028 547 HCGYLDEAEAVFAEMRRKN 565 (856)
Q Consensus 547 ~~g~~~~A~~l~~~m~~~g 565 (856)
...++++|.++++.+.+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 217 ENENWTEAIRILKHILEHD 235 (711)
T ss_pred cccCHHHHHHHHHHHhhhc
Confidence 6667777777777666644
No 311
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=65.76 E-value=50 Score=29.54 Aligned_cols=44 Identities=9% Similarity=0.091 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 554 AEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 554 A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
..+-+..+....+.|++.+..+.+.+|-+.+++..|.++|+.++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555555554
No 312
>PRK09687 putative lyase; Provisional
Probab=64.83 E-value=2e+02 Score=30.82 Aligned_cols=233 Identities=9% Similarity=0.070 Sum_probs=124.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCCHHHH
Q 003028 358 HDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYL----NEALDVFKQMQVVGCEPDRVTY 433 (856)
Q Consensus 358 pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~----~~A~~lf~~m~~~g~~pd~~ty 433 (856)
+|.......+..+...|..+ +...+..+.. .+|...-...+.++.+.|+. .++...+..+... .+|....
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 56666666677776666533 3333333433 24666666666666766653 4566666665332 4566666
Q ss_pred HHHHHHHHHcCCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 434 CTLIDIHAKAGFL-----DVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIA 508 (856)
Q Consensus 434 ~~Ll~~~~k~g~~-----~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~ 508 (856)
...+.++...+.. ..+...+..+.. .++..+-...+.++++.++. ++...+-.+.+. +|...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5666665554321 223333333322 24556666677777777763 444554444442 34444444445
Q ss_pred HHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 003028 509 LQAKAR-NYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVR 587 (856)
Q Consensus 509 ~~~~~g-~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~ 587 (856)
++.+.+ ...++...+..+.. .++...-...+.++.+.++. .+...+-...+.+ + .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 555442 23355555555553 34555666677777777764 3444444444332 2 234566667777774
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 588 KAWEWYEAMLQAGLRPNVPTCNSLLSAF 615 (856)
Q Consensus 588 ~A~~l~~~m~~~g~~pd~~t~n~Li~ay 615 (856)
+|...+..+.+. .+|...-...+.++
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 566666666653 24555555444443
No 313
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.78 E-value=1.1e+02 Score=34.68 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=31.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCC
Q 003028 370 LGRARQFGAINKLLDQMVRDGCQPNVVT--YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRV--TYCTLIDIHAKAGF 445 (856)
Q Consensus 370 ~~k~g~~~~A~~lf~~m~~~g~~pd~~t--y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~--ty~~Ll~~~~k~g~ 445 (856)
..+.|+.+-+..++ +.|..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+
T Consensus 9 A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34556655444433 4455554432 233444445555544 233333444444322 11223344445555
Q ss_pred HHHHHHH
Q 003028 446 LDVAMDM 452 (856)
Q Consensus 446 ~~~A~~l 452 (856)
.+.+..+
T Consensus 81 ~~~v~~L 87 (413)
T PHA02875 81 VKAVEEL 87 (413)
T ss_pred HHHHHHH
Confidence 5544333
No 314
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.59 E-value=1.5e+02 Score=29.33 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=58.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-hHHHH--HHHHHhcCCH
Q 003028 511 AKARNYQSALKLYRDMQNAGFEPDKV-TYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEP-VYGLL--VDLWGKAGNV 586 (856)
Q Consensus 511 ~~~g~~~~A~~ll~~M~~~gi~pd~~-ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~-~y~~L--i~~~~k~g~~ 586 (856)
.+.+..++|+.-|.++.+.|..--.+ ...-+.......|+-..|...|+++-.....|-.. -...| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455566666666665554321111 11111223345566666666666665433222211 01111 1123455666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 587 RKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 587 ~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+......+-+...+-+.-...-..|.-+-.+.|++.+|...|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66665555554333233333444555555566777777777766655
No 315
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.04 E-value=1.5e+02 Score=28.96 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=27.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 546 GHCGYLDEAEAVFAEMRRKNWV-PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA 599 (856)
Q Consensus 546 ~~~g~~~~A~~l~~~m~~~g~~-pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~ 599 (856)
...++.++++.++.-+.--... +...++.. ..+...|++++|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence 3455666666666666543211 12222322 2345667777777777776553
No 316
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=63.84 E-value=73 Score=28.27 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 553 EAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 553 ~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
++.+-+..+....+.|++.+..+.+.+|-+.+|+..|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555444
No 317
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=62.22 E-value=18 Score=24.52 Aligned_cols=30 Identities=17% Similarity=0.037 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 711 GLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 711 ~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
.+|..++.+|...|++++|+..|++.++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 357789999999999999999999998753
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=61.18 E-value=2.4 Score=40.27 Aligned_cols=83 Identities=16% Similarity=0.254 Sum_probs=44.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF 445 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~ 445 (856)
+|..+.+.+.++.+..+++.+...+..-+....+.|+..|++.+..++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555556666666666666665444445666666777777666656666655511 11222344555555555
Q ss_pred HHHHHHHHHH
Q 003028 446 LDVAMDMYKK 455 (856)
Q Consensus 446 ~~~A~~l~~~ 455 (856)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 319
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=60.95 E-value=20 Score=24.13 Aligned_cols=29 Identities=21% Similarity=-0.001 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 712 LVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 712 ~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
.+..+...|.+.|++++|++.|++..+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 46688999999999999999999988653
No 320
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.76 E-value=81 Score=33.58 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=29.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-----cCCHHHHHHHH
Q 003028 467 TYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK-----ARNYQSALKLY 523 (856)
Q Consensus 467 ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~-----~g~~~~A~~ll 523 (856)
+....|-.|.|.++...+.++-.......-.-+...|.+++..|.. .|.+++|.++.
T Consensus 120 IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 120 ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3444444566666666665555555443222233445555554443 46666666655
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=59.86 E-value=63 Score=32.75 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHH
Q 003028 603 PNVPTCNSLLSAFLRVGQLSDA 624 (856)
Q Consensus 603 pd~~t~n~Li~ay~~~g~~e~A 624 (856)
+|+..+..|+..|.+.|+++.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444444444444
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.39 E-value=4.2e+02 Score=32.35 Aligned_cols=162 Identities=12% Similarity=0.130 Sum_probs=94.0
Q ss_pred hhChhHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKH---DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNE 413 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~p---d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 413 (856)
.+.+++|+++-+.. .|..+ -...+...|+.+.-.|++++|-.+.-.|... +..-|.--+.-+...++...
T Consensus 369 ~k~yeeAl~~~k~~---~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 369 KKKYEEALDAAKAS---IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred hhHHHHHHHHHHhc---cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccch
Confidence 35566777665543 35555 3457888999999999999999999888763 67778777777777776554
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003028 414 ALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 414 A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~ 493 (856)
...+ +....-..+...|..+|..|.. .+.. .++ +.+.. .+ ...|..+--.=+-. .+..+
T Consensus 442 Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~---~F~-e~i~~-Wp--~~Lys~l~iisa~~----------~q~~q 500 (846)
T KOG2066|consen 442 IAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVK---GFL-ELIKE-WP--GHLYSVLTIISATE----------PQIKQ 500 (846)
T ss_pred hhcc---CCCCCcccCchHHHHHHHHHHH-HHHH---HHH-HHHHh-CC--hhhhhhhHHHhhcc----------hHHHh
Confidence 4333 3322223466788888888877 2222 222 22222 22 23333222111111 11111
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 494 QGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQN 528 (856)
Q Consensus 494 ~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 528 (856)
. .-+...-..|+..|...+++..|+.++-.+++
T Consensus 501 ~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 501 N--SESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred h--ccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 1 01222223378888888888888888776653
No 323
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=58.38 E-value=2.8 Score=39.79 Aligned_cols=83 Identities=17% Similarity=0.160 Sum_probs=40.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 541 VMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQ 620 (856)
Q Consensus 541 ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~ 620 (856)
++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34444455555566666666655444445555666666666665555555555411 11222334444455555
Q ss_pred HHHHHHHHHH
Q 003028 621 LSDAYHLLQG 630 (856)
Q Consensus 621 ~e~A~~l~~~ 630 (856)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 324
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=58.28 E-value=13 Score=24.02 Aligned_cols=23 Identities=22% Similarity=0.101 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHH
Q 003028 713 VDAVVDFLHKSGLKEEAGSVWEV 735 (856)
Q Consensus 713 ~~aLi~~y~k~G~~eeA~~lf~~ 735 (856)
.-.+..+|...|++++|..++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhC
Confidence 45788999999999999998863
No 325
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.30 E-value=94 Score=27.78 Aligned_cols=88 Identities=17% Similarity=0.277 Sum_probs=59.6
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDV 417 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 417 (856)
+.+++|..+-+|+... +.. ...+--+-+..+...|++++|..+.+.+ +.||...|-+|-. .+.|..+++..-
T Consensus 19 HcHqEA~tIAdwL~~~-~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~r 90 (115)
T TIGR02508 19 HCHQEANTIADWLHLK-GES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESR 90 (115)
T ss_pred hHHHHHHHHHHHHhcC-Cch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHH
Confidence 5678899999999752 211 2222223345566789999999888766 4689998888765 567777777777
Q ss_pred HHHHHHcCCCCCHHHHH
Q 003028 418 FKQMQVVGCEPDRVTYC 434 (856)
Q Consensus 418 f~~m~~~g~~pd~~ty~ 434 (856)
+.+|...| .|....|.
T Consensus 91 l~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 91 LNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 77777766 55544443
No 326
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.15 E-value=1.4e+02 Score=32.15 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 399 NRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQ 457 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~ 457 (856)
+..-.+|..+|.+.+|.++.++..... +.+...|-.++..+...|+--.|.+-++.+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344456666666666666666665544 4555566666666666666666665555553
No 327
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=56.10 E-value=70 Score=28.35 Aligned_cols=44 Identities=5% Similarity=0.043 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 414 ALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQ 457 (856)
Q Consensus 414 A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~ 457 (856)
+.+-++.+....+.|++....+.+.+|-+.+++..|..+|+-++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444455555555555555555555555555555444
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=55.39 E-value=1.1e+02 Score=31.14 Aligned_cols=72 Identities=11% Similarity=-0.005 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHHH
Q 003028 412 NEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA---GLSPDTFTYSVIINCLGKAGHLQAA 484 (856)
Q Consensus 412 ~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~---g~~pd~~ty~~Li~~y~k~g~~~~A 484 (856)
+.|++.|-++...+.--++.....|...|. ..+.++++.++-...+. +-.+|+..+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555554443333333333333333 44555555555555443 2234555555555555555555554
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=54.01 E-value=2.9e+02 Score=31.63 Aligned_cols=121 Identities=8% Similarity=0.095 Sum_probs=76.9
Q ss_pred HhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003028 406 GRANYLNEAL-DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAA 484 (856)
Q Consensus 406 ~~~g~~~~A~-~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A 484 (856)
...|++-.|- ++|..+....-.|+.+...+. .+...|+++.+.+.+...... +.....+..+++...-+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3445555444 445555544334554444333 355678888888888776554 445667788888888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003028 485 HQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG 530 (856)
Q Consensus 485 ~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g 530 (856)
..+-..|....+. +......-....-..|-++++.-.|+++....
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9888888766554 33333333333345677888888888876543
No 330
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=53.64 E-value=1.1e+02 Score=27.26 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRD 525 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 525 (856)
.++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+ +.||...|-+|... +.|..+++..-+..
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 45666666665544321 2222233345566677777777766655 35777777666543 55666666666666
Q ss_pred HHHcC
Q 003028 526 MQNAG 530 (856)
Q Consensus 526 M~~~g 530 (856)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 65554
No 331
>PHA02875 ankyrin repeat protein; Provisional
Probab=53.57 E-value=3.4e+02 Score=30.62 Aligned_cols=122 Identities=17% Similarity=0.186 Sum_probs=57.7
Q ss_pred CCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003028 354 AGFKHDEHT--YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVV--TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD 429 (856)
Q Consensus 354 ~g~~pd~~~--y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~--ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd 429 (856)
.|..++... ..+.+...++.|+.+-+. .+.+.|..|+.. ...+.+...+..|+.+.+..+++. |...+
T Consensus 24 ~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~----~~~~~ 95 (413)
T PHA02875 24 IGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL----GKFAD 95 (413)
T ss_pred CCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc----CCccc
Confidence 466665432 345566677777766443 344556555432 122345556677777665555532 22111
Q ss_pred HH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCHHHHHHH
Q 003028 430 RV---TYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFT--YSVIINCLGKAGHLQAAHQL 487 (856)
Q Consensus 430 ~~---ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t--y~~Li~~y~k~g~~~~A~~l 487 (856)
.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+.+..+
T Consensus 96 ~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 96 DVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred ccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 10 1123334444555543 4444455555544321 12334444556665544333
No 332
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.09 E-value=2.1e+02 Score=27.40 Aligned_cols=82 Identities=12% Similarity=0.182 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGC-----QPNVVTYNRLIHSYGRANY-LNEALDVFKQMQVVGCEPDRVTYCT 435 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~-----~pd~~ty~~Li~~~~~~g~-~~~A~~lf~~m~~~g~~pd~~ty~~ 435 (856)
..|.++.-....+.+.....+++.+..-.. ..+..+|++++.+..+..- ---+..+|.-|++.+.+.+..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 356677776777777777777776632100 1244456777776655554 4455666666666666777777777
Q ss_pred HHHHHHHc
Q 003028 436 LIDIHAKA 443 (856)
Q Consensus 436 Ll~~~~k~ 443 (856)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77766554
No 333
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=52.88 E-value=18 Score=25.09 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 602 RPNVPTCNSLLSAFLRVGQLSDAY 625 (856)
Q Consensus 602 ~pd~~t~n~Li~ay~~~g~~e~A~ 625 (856)
+-|...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345667777777777777777764
No 334
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=51.50 E-value=32 Score=23.15 Aligned_cols=28 Identities=21% Similarity=0.068 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 003028 712 LVDAVVDFLHKSGLKEEAGSVWEVAAQK 739 (856)
Q Consensus 712 ~~~aLi~~y~k~G~~eeA~~lf~~m~~~ 739 (856)
+|..+...|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5678899999999999999999998754
No 335
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=51.04 E-value=3.5e+02 Score=29.27 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCChHHHH
Q 003028 537 TYSIVMEVLGHCGYLDEAE 555 (856)
Q Consensus 537 ty~~ll~a~~~~g~~~~A~ 555 (856)
+|..|+.++|..|+.+..+
T Consensus 323 ~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhhHHHHHHhcCChHHHHH
Confidence 6777777777777766543
No 336
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=50.67 E-value=2e+02 Score=27.82 Aligned_cols=17 Identities=6% Similarity=0.352 Sum_probs=8.5
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003028 372 RARQFGAINKLLDQMVR 388 (856)
Q Consensus 372 k~g~~~~A~~lf~~m~~ 388 (856)
..|++++|..+|+++.+
T Consensus 56 ~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 56 ARGNYDEAARILRELLS 72 (153)
T ss_pred HcCCHHHHHHHHHhhhc
Confidence 44555555555555544
No 337
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=50.08 E-value=61 Score=29.03 Aligned_cols=37 Identities=5% Similarity=0.071 Sum_probs=15.0
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 421 MQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQ 457 (856)
Q Consensus 421 m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~ 457 (856)
+....+.|++....+.+.+|-+.+++..|..+|+-++
T Consensus 36 l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 36 LFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=49.73 E-value=17 Score=24.19 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=21.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhC
Q 003028 715 AVVDFLHKSGLKEEAGSVWEVAAQK 739 (856)
Q Consensus 715 aLi~~y~k~G~~eeA~~lf~~m~~~ 739 (856)
.+..+|.+.|++++|.+.|+++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667788899999999999999875
No 339
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=48.98 E-value=5.5e+02 Score=30.91 Aligned_cols=49 Identities=18% Similarity=0.013 Sum_probs=31.5
Q ss_pred HHcCCHHHHHHHHHHHHHCC-CC-----CCHHHHHHHHHH--HHhcCCcchHHHHHH
Q 003028 616 LRVGQLSDAYHLLQGMLNLG-LK-----PSLQTYTLLLSC--CTEARSPYDMGFCHE 664 (856)
Q Consensus 616 ~~~g~~e~A~~l~~~M~~~g-~~-----Pd~~ty~~Ll~a--~~~~g~~~~a~~l~~ 664 (856)
+-.+++..|...+..|.+.. -. .....+...+.| +-..|+.+.|...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 45788888999988888631 11 223344455554 445688888888876
No 340
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.92 E-value=6.1e+02 Score=31.88 Aligned_cols=26 Identities=23% Similarity=0.462 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQV 423 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~ 423 (856)
|..|+..|...|+.++|++++.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 77788888888888888888877754
No 341
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=48.87 E-value=22 Score=24.71 Aligned_cols=12 Identities=25% Similarity=0.210 Sum_probs=4.2
Q ss_pred HHHHHHHHhcCC
Q 003028 399 NRLIHSYGRANY 410 (856)
Q Consensus 399 ~~Li~~~~~~g~ 410 (856)
+.|...|...|+
T Consensus 17 ~nla~~~~~~g~ 28 (34)
T PF13431_consen 17 NNLANLYLNQGD 28 (34)
T ss_pred HHHHHHHHHCcC
Confidence 333333333333
No 342
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.87 E-value=6.2e+02 Score=31.46 Aligned_cols=255 Identities=11% Similarity=-0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 345 GFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVV 424 (856)
Q Consensus 345 ~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~ 424 (856)
.+-.++.......-+...+.+....+...|+.+.+..+-.-|.. |..++..+++.+.+++|++++..-...
T Consensus 489 ~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~ 559 (911)
T KOG2034|consen 489 EVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNP 559 (911)
T ss_pred HHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccch
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHcCCCCCHH
Q 003028 425 GCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKA---GHLQAAHQLFCEMVNQGCIPNLV 501 (856)
Q Consensus 425 g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~---g~~~~A~~lf~~m~~~g~~pd~~ 501 (856)
. +.--|+-.--.....++.+...+.+-..+......++..+.+. -....+.+.++--...-..-+..
T Consensus 560 e----------l~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ 629 (911)
T KOG2034|consen 560 E----------LFYKYAPELITHSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPA 629 (911)
T ss_pred h----------hHHHhhhHHHhcCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHH
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 003028 502 TYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWG 581 (856)
Q Consensus 502 ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~ 581 (856)
.+|.++..|++..+-+.-..+-..+...+. ..+-....++.|.+.+.-..+..++..|.- |...++.-.
T Consensus 630 ihn~ll~lya~~~~~~ll~~le~~~~~~~~--~~YDl~~alRlc~~~~~~ra~V~l~~~l~l---------~~~aVdlAL 698 (911)
T KOG2034|consen 630 IHNSLLHLYAKHERDDLLLYLEIIKFMKSR--VHYDLDYALRLCLKFKKTRACVFLLCMLNL---------FEDAVDLAL 698 (911)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHhhcccc--ceecHHHHHHHHHHhCccceeeeHHHHHHH---------HHHHHHHHh
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 582 KAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQG 630 (856)
Q Consensus 582 k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~ 630 (856)
+.. +|.|...-+...+.....-..=.+.-=....+..+.++|+.++.+
T Consensus 699 ~~d-~dlak~~A~~~ee~e~lrKkLWLkIAkh~v~~~~~ikk~i~~Lk~ 746 (911)
T KOG2034|consen 699 QFD-IDLAKVIANDPEEDEDLRKKLWLKIAKHVVKQENDIKKAIRFLKE 746 (911)
T ss_pred hcC-HHHHhhhhcChhhHHHHHHHHHHHHHHHHHHhhccHHHHHHHhcc
No 343
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=48.61 E-value=43 Score=22.49 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 606 PTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 606 ~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.+|..+...|...|++++|.+.|++.++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567777788888888888888887765
No 344
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=48.54 E-value=4.9e+02 Score=30.20 Aligned_cols=277 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH------HhcCCHHHH
Q 003028 341 TVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSY------GRANYLNEA 414 (856)
Q Consensus 341 ~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~------~~~g~~~~A 414 (856)
+.|..+++-..+ -+...+..+-...--..+.+...++|++.... -|+...|+..|..| .+...+..-
T Consensus 268 ~laqr~l~i~~~-----tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~ 340 (568)
T KOG2396|consen 268 DLAQRELEILSQ-----TDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHT 340 (568)
T ss_pred HHHHHHHHHHHH-----hhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHH
Q 003028 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKA--GHLQAAHQLFCEMV 492 (856)
Q Consensus 415 ~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~--g~~~~A~~lf~~m~ 492 (856)
..+|+...+.+ .....-+..+...+.......++.++-..+...++.-+...|-.-+...... .---.-..+|..+.
T Consensus 341 ~~~~~~~~~~~-~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r 419 (568)
T KOG2396|consen 341 MCVFRKAHELK-LLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLR 419 (568)
T ss_pred HHHHHHHHHhc-ccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q ss_pred HcCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003028 493 NQGCIPNLVTYNIMI-ALQAKARNYQSALKLYRDMQNAGFEPDKVTY-SIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDE 570 (856)
Q Consensus 493 ~~g~~pd~~ty~~Li-~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty-~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 570 (856)
..-..+-...|+... ..+......+..+..+..|. .|+..|+ +.+++.+-..|-..+|..++..+.. -..|+.
T Consensus 420 ~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~----~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~-lpp~sl 494 (568)
T KOG2396|consen 420 KQVCSELLISWASASEGDSLQEDTLDLIISALLSVI----GADSVTLKSKYLDWAYESGGYKKARKVYKSLQE-LPPFSL 494 (568)
T ss_pred HHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhc----CCceeehhHHHHHHHHHhcchHHHHHHHHHHHh-CCCccH
Q ss_pred hhHHHHHHH---HHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 571 PVYGLLVDL---WGKAGNVRKAWEWYEAML-QAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 571 ~~y~~Li~~---~~k~g~~~~A~~l~~~m~-~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
..|.-+|+. ...+| +..+..+++.|. ..| .|+..|--.+.-=...|..+.+-.++.+..+
T Consensus 495 ~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 495 DLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHH
No 345
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.07 E-value=1e+02 Score=27.90 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 502 TYNIMIALQAKARNYQSALKLYRDMQN 528 (856)
Q Consensus 502 ty~~Li~~~~~~g~~~~A~~ll~~M~~ 528 (856)
-|..|+..|...|.+++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 378888888888888888888888776
No 346
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=47.76 E-value=3.4e+02 Score=28.06 Aligned_cols=28 Identities=32% Similarity=0.275 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003028 537 TYSIVMEVLGHCGYLDEAEAVFAEMRRK 564 (856)
Q Consensus 537 ty~~ll~a~~~~g~~~~A~~l~~~m~~~ 564 (856)
||--+.+-+...|+.++|..+|+.....
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 5555666666667777777766665553
No 347
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=47.32 E-value=1.6e+02 Score=31.35 Aligned_cols=20 Identities=5% Similarity=-0.105 Sum_probs=9.8
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 003028 544 VLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 544 a~~~~g~~~~A~~l~~~m~~ 563 (856)
.|.+.+....+.++-....+
T Consensus 127 LysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 127 LYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHh
Confidence 34455555555555444444
No 348
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=47.21 E-value=1.1e+02 Score=31.53 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=23.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003028 437 IDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFC 489 (856)
Q Consensus 437 l~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~ 489 (856)
++.+.+.+.+.+++.+.++=++.. +.|..+-..+++.||-.|++++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 344444445555555444444331 2233333444455555555555544443
No 349
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=46.34 E-value=2.8e+02 Score=26.77 Aligned_cols=50 Identities=14% Similarity=0.120 Sum_probs=25.9
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 548 CGYLDEAEAVFAEMRRKNW-VPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA 599 (856)
Q Consensus 548 ~g~~~~A~~l~~~m~~~g~-~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~ 599 (856)
.++.++++.+++.|.--.. .+...++...+ +.+.|++++|..+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 5666666666666654221 11222333322 45666666666666666653
No 350
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=46.29 E-value=1.9e+02 Score=26.24 Aligned_cols=88 Identities=15% Similarity=0.260 Sum_probs=53.8
Q ss_pred hhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
.+.+++|..+.+|+....+ -...+--+-+..+...|++++| +. .......||...|-+|-. .+.|.-+++..
T Consensus 19 ~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A--Ll--~~~~~~~pdL~p~~AL~a--~klGL~~~~e~ 90 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA--LL--LPQCHCYPDLEPWAALCA--WKLGLASALES 90 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH--HH--HHTTS--GGGHHHHHHHH--HHCT-HHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH--HH--hcccCCCccHHHHHHHHH--HhhccHHHHHH
Confidence 3578899999999986433 1222333345566788999999 22 223334688888877755 67888888888
Q ss_pred HHHHHHHcCCCCCHHHH
Q 003028 417 VFKQMQVVGCEPDRVTY 433 (856)
Q Consensus 417 lf~~m~~~g~~pd~~ty 433 (856)
.+.++-..| .|....|
T Consensus 91 ~l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 91 RLTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHHCT-S-SHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 888886655 3433333
No 351
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.22 E-value=3.6e+02 Score=27.36 Aligned_cols=89 Identities=12% Similarity=0.065 Sum_probs=53.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 542 MEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYG-----LLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFL 616 (856)
Q Consensus 542 l~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~-----~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~ 616 (856)
...+...+++++|+..++...... ....+. .|.......|.+|+|+.+++...+.++ .......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t---~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQT---KDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccc---hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 345666677777777777655321 122222 234455667777777777776655331 2222334456677
Q ss_pred HcCCHHHHHHHHHHHHHCC
Q 003028 617 RVGQLSDAYHLLQGMLNLG 635 (856)
Q Consensus 617 ~~g~~e~A~~l~~~M~~~g 635 (856)
..|+-++|..-|.+.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7888888888877777654
No 352
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.19 E-value=1e+02 Score=27.93 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 003028 712 LVDAVVDFLHKSGLKEEAGSVWEVAAQK 739 (856)
Q Consensus 712 ~~~aLi~~y~k~G~~eeA~~lf~~m~~~ 739 (856)
.|..|++.|...|..++|+++|.+....
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 4889999999999999999999998873
No 353
>PF09463 Opy2: Opy2 protein; InterPro: IPR018571 Opy2p acts as a membrane anchor in the HOG signalling pathway []. This entry represents a conserved N-terminal domain.
Probab=44.03 E-value=14 Score=26.10 Aligned_cols=20 Identities=35% Similarity=0.901 Sum_probs=14.8
Q ss_pred CCCCCCCCc-cCCCccchhhhh
Q 003028 24 CSASDGSSC-TCSEDETCVSRR 44 (856)
Q Consensus 24 ~~~~~~~~~-~~~~~~~~~~~~ 44 (856)
|..+.. +| +|+++|+|+-+-
T Consensus 4 C~~~~p-~CP~C~~ge~C~~t~ 24 (35)
T PF09463_consen 4 CPDTPP-SCPSCPSGEECVLTS 24 (35)
T ss_pred CCCCCC-CCCCCCCCCEEEecC
Confidence 444444 89 999999998653
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.36 E-value=47 Score=24.80 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=11.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 003028 611 LLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 611 Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
|..+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555543
No 355
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.07 E-value=4.9e+02 Score=28.56 Aligned_cols=142 Identities=14% Similarity=0.198 Sum_probs=67.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---
Q 003028 347 FNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRD-GCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQ--- 422 (856)
Q Consensus 347 f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~-g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~--- 422 (856)
++.+.+...++.|...++.|... ....+++..+..++..+. |-.--...+-.....||+-|+.+.|++.+.+..
T Consensus 57 Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~kt 134 (393)
T KOG0687|consen 57 YEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKT 134 (393)
T ss_pred HHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 33333444555565555555543 222333333344443332 111112334455566777777777776665542
Q ss_pred -HcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003028 423 -VVGCEPDRVTYCTLIDIHA-KAGFLDVAMDMYKKMQAAGLSPD----TFTYSVIINCLGKAGHLQAAHQLFCEMV 492 (856)
Q Consensus 423 -~~g~~pd~~ty~~Ll~~~~-k~g~~~~A~~l~~~m~~~g~~pd----~~ty~~Li~~y~k~g~~~~A~~lf~~m~ 492 (856)
..|.+.|++.+.+-+..+. ...-+.+-++..+.|.+.|-.-+ ..+|..+-. ....++.+|-.+|-+..
T Consensus 135 vs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~--msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 135 VSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYC--MSVRNFKEAADLFLDSV 208 (393)
T ss_pred hhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHH--HHHHhHHHHHHHHHHHc
Confidence 3466666666555444332 22223344444444555554332 223333322 22346777777776554
No 356
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=42.42 E-value=2.6e+02 Score=28.90 Aligned_cols=106 Identities=11% Similarity=0.155 Sum_probs=55.0
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 348 NWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQP---NVVTY--NRLIHSYGRANYLNEALDVFKQMQ 422 (856)
Q Consensus 348 ~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~p---d~~ty--~~Li~~~~~~g~~~~A~~lf~~m~ 422 (856)
+|..+...+.++...+|.||--|.-...+.+|-+.| ..+.|+.| |..++ ..-|....+.|++++|++....+-
T Consensus 14 ~w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~F--a~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 14 EWEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKF--AKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred hhHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHh--ccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 344444445555556666655555555555566655 33444544 33333 245666788888888888877764
Q ss_pred HcCCCCCHHHHHHHHHH----HHHcCCHHHHHHHHHH
Q 003028 423 VVGCEPDRVTYCTLIDI----HAKAGFLDVAMDMYKK 455 (856)
Q Consensus 423 ~~g~~pd~~ty~~Ll~~----~~k~g~~~~A~~l~~~ 455 (856)
..-+.-|...+-.|... ..+.|..++|+++.+.
T Consensus 92 PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 92 PEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33233343232222221 2344555555555443
No 357
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.59 E-value=4.4e+02 Score=27.60 Aligned_cols=51 Identities=22% Similarity=0.349 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003028 602 RPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEAR 654 (856)
Q Consensus 602 ~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g 654 (856)
.|.+.....|+..+. .+++++|++++.++-+.|+.|.. ..+.++..+....
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K~~~ 286 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVVKNMD 286 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHhcc
Confidence 477777777777654 56899999999999888888764 4455666664443
No 358
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=41.38 E-value=4.8e+02 Score=28.06 Aligned_cols=29 Identities=3% Similarity=-0.059 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 535 KVTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 535 ~~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
......++.+++...+.+...++++.+..
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 33444455555555555555555555554
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=40.23 E-value=1.5e+02 Score=30.44 Aligned_cols=78 Identities=15% Similarity=0.060 Sum_probs=53.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHH
Q 003028 468 YSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNA--GFEPDKVTYSIVMEVL 545 (856)
Q Consensus 468 y~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~--gi~pd~~ty~~ll~a~ 545 (856)
.+..+..+.+.+.+++|.....+-++.. +.|..+-..++..||-.|+|++|..-++..-.. ...+-..+|..+|.+-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 4455667777888888888887766653 225666677888888888888888777655443 2334466787777764
Q ss_pred H
Q 003028 546 G 546 (856)
Q Consensus 546 ~ 546 (856)
.
T Consensus 83 a 83 (273)
T COG4455 83 A 83 (273)
T ss_pred H
Confidence 3
No 360
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=39.91 E-value=7e+02 Score=29.53 Aligned_cols=382 Identities=8% Similarity=0.029 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
+...|.++|.---...+.+.+..+++.+... .+.-.--|......=.+.|..+.+.++|++-.. |++.+...|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Q ss_pred HHH-HcCCHHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---
Q 003028 439 IHA-KAGFLDVAMDMYKKMQAA-GLS-PDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK--- 512 (856)
Q Consensus 439 ~~~-k~g~~~~A~~l~~~m~~~-g~~-pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~--- 512 (856)
-+. ..|+.+.....|+..+.. |.. .....|...|.--..++++.....+++++.+....-=...|.......-.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~ 201 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEE 201 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCCh
Q ss_pred --cCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 003028 513 --ARNYQSALKLYRDMQN-AGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKA 589 (856)
Q Consensus 513 --~g~~~~A~~ll~~M~~-~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A 589 (856)
....+++.++-..... ..+.-.....-.+=..--..++.......-..++..-+..-..+|+--+.-..+.--++..
T Consensus 202 ~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~ 281 (577)
T KOG1258|consen 202 KILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEG 281 (577)
T ss_pred hhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhh
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003028 590 WEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 590 ~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~ 669 (856)
..---.+.+--..++..+|+..+.-....|+.+.+.-+|+...- -+.--..-|--.+.-....|+.+-+..++.+-.+.
T Consensus 282 IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli-~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 282 IKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI-PCALYDEFWIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred ccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh-HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Q ss_pred CCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHH---HHHHHHHhCCCCCC
Q 003028 670 GHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAG---SVWEVAAQKNVYPD 744 (856)
Q Consensus 670 g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~---~lf~~m~~~~~~Pd 744 (856)
-.+....+-.+-....+..+-...|...++.+...- ..-+.+-.--+.+..+.|..+.+. +++.........+.
T Consensus 361 ~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~ 437 (577)
T KOG1258|consen 361 HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG 437 (577)
T ss_pred cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc
No 361
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=39.68 E-value=4.5e+02 Score=27.19 Aligned_cols=164 Identities=15% Similarity=0.073 Sum_probs=92.2
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHH
Q 003028 356 FKHD-EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVG-CEPDRVTY 433 (856)
Q Consensus 356 ~~pd-~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g-~~pd~~ty 433 (856)
+.|+ +..||.|.-.+...|+++.|.+.|+...+....-+-...|.-|..| -.|++..|.+=|.+.-+.+ -.|=...|
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 4454 4589999999999999999999999998853222333334434333 3578888888777765543 11222223
Q ss_pred HHHHHHHHHcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC------CCHHHHHHH
Q 003028 434 CTLIDIHAKAGFLDVAMDM-YKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCI------PNLVTYNIM 506 (856)
Q Consensus 434 ~~Ll~~~~k~g~~~~A~~l-~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~------pd~~ty~~L 506 (856)
-.+. -..-+..+|..- .++... .|..-|...|-.|.- |++. .+.+|+.+....-. .=..||--|
T Consensus 173 LYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 173 LYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 2222 223355555543 333332 244444433322211 1111 12233333321100 013467778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 003028 507 IALQAKARNYQSALKLYRDMQNA 529 (856)
Q Consensus 507 i~~~~~~g~~~~A~~ll~~M~~~ 529 (856)
...|...|+.++|..+|+.....
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHH
Confidence 88888999999999999987654
No 362
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.91 E-value=5.3e+02 Score=27.79 Aligned_cols=67 Identities=9% Similarity=0.192 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHHHcCC
Q 003028 430 RVTYCTLIDIHAKAGFLDVAMDMYKKMQA----AGLSPDTFTYSVII-NCLGKAGHLQAAHQLFCEMVNQGC 496 (856)
Q Consensus 430 ~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~----~g~~pd~~ty~~Li-~~y~k~g~~~~A~~lf~~m~~~g~ 496 (856)
...+..+..-|++.++.+.+.+...+..+ .|.+.|+....+-+ -.|....-+++-.+..+.|.+.|.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 34555566666776666666665554433 35555544433322 233344445566666666666654
No 363
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=38.81 E-value=7.7e+02 Score=29.67 Aligned_cols=195 Identities=13% Similarity=0.161 Sum_probs=111.9
Q ss_pred CHHHHHHHHHhhhChhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHH-----H
Q 003028 326 DAYQANQVLKQLQDHTVALGFFNWLRRQAGFKHD--EHTYTTMVGILG-RARQFGAINKLLDQMVRDGCQPNVV-----T 397 (856)
Q Consensus 326 ~~~~~~~vL~~l~~~~~Al~~f~~m~~~~g~~pd--~~~y~~Li~~~~-k~g~~~~A~~lf~~m~~~g~~pd~~-----t 397 (856)
+...|.++++. |++-++-+.++....|. ..++--+...|. ...+++.|+..+++....--.++.. .
T Consensus 29 ~l~~Y~kLI~~------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~ 102 (608)
T PF10345_consen 29 QLKQYYKLIAT------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRC 102 (608)
T ss_pred hHHHHHHHHHH------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 33445555543 67777777654444443 334555566665 6788999999998765432122221 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHH
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVV----GCEPDRVTYCTL-IDIHAKAGFLDVAMDMYKKMQAAG---LSPDTFTYS 469 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~----g~~pd~~ty~~L-l~~~~k~g~~~~A~~l~~~m~~~g---~~pd~~ty~ 469 (856)
...++..|.+.+... |+..+++..+. +..+=...|..+ +..+...+++..|.+.++.+...- ..|-..++-
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 235567777777666 88888876543 112223333333 333334479999999998886542 233344444
Q ss_pred HHHHHHH--ccCCHHHHHHHHHHHHHcC---------CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 003028 470 VIINCLG--KAGHLQAAHQLFCEMVNQG---------CIPNLVTYNIMIALQA--KARNYQSALKLYRDMQ 527 (856)
Q Consensus 470 ~Li~~y~--k~g~~~~A~~lf~~m~~~g---------~~pd~~ty~~Li~~~~--~~g~~~~A~~ll~~M~ 527 (856)
.++.+.. ..+..+++.+.++++.... ..|-..+|..+++.++ ..|+++.+...++++.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444433 4455666777776663321 2345667777776554 5677767766666553
No 364
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=37.92 E-value=9e+02 Score=30.18 Aligned_cols=264 Identities=13% Similarity=0.036 Sum_probs=141.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---------------CCCCCHHHHH----HHH--HHHHhcCCHHHHHHHHHHHHHc
Q 003028 366 MVGILGRARQFGAINKLLDQMVRD---------------GCQPNVVTYN----RLI--HSYGRANYLNEALDVFKQMQVV 424 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~---------------g~~pd~~ty~----~Li--~~~~~~g~~~~A~~lf~~m~~~ 424 (856)
-|+-..+.|+++.|..+++..-.. ++ |+....+ .|+ .......++++|..++.+....
T Consensus 366 AI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~l-P~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~ 444 (894)
T COG2909 366 AIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKAL-PAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHF 444 (894)
T ss_pred HHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhC-CHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 455566788898888888766211 12 2222221 122 2334568899999999887553
Q ss_pred CCCCCH-------HHHHHHHH-HHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003028 425 GCEPDR-------VTYCTLID-IHAKAGFLDVAMDMYKKMQAA----GLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMV 492 (856)
Q Consensus 425 g~~pd~-------~ty~~Ll~-~~~k~g~~~~A~~l~~~m~~~----g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~ 492 (856)
=-.|+. ..++.|-. .....|+++++.++.+..... -..+....+.++..+..-.|++++|..+.....
T Consensus 445 l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 445 LKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred hCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 222222 13444322 233568889999888877654 233456677778888888999999998887665
Q ss_pred HcCCCCCHHHHH---HHH--HHHHHcCC--HHHHHHHHHHHHHc--CCC----CCHHHHHHHHHHHHhc-CChHHHHHHH
Q 003028 493 NQGCIPNLVTYN---IMI--ALQAKARN--YQSALKLYRDMQNA--GFE----PDKVTYSIVMEVLGHC-GYLDEAEAVF 558 (856)
Q Consensus 493 ~~g~~pd~~ty~---~Li--~~~~~~g~--~~~A~~ll~~M~~~--gi~----pd~~ty~~ll~a~~~~-g~~~~A~~l~ 558 (856)
+..-.-++..|. .+. ..+...|+ +.+.+..|...... +-+ +-..++..++.++.+. +...++..-+
T Consensus 525 ~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~ 604 (894)
T COG2909 525 QMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGI 604 (894)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcc
Confidence 432122333333 222 33445663 33333444333221 111 1223455555555542 1222222222
Q ss_pred HHHHHcCCCCCHhhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHH--HHHHHcCCHHHHHHHHHH
Q 003028 559 AEMRRKNWVPDEPVY--GLLVDLWGKAGNVRKAWEWYEAMLQAGLRP----NVPTCNSLL--SAFLRVGQLSDAYHLLQG 630 (856)
Q Consensus 559 ~~m~~~g~~pd~~~y--~~Li~~~~k~g~~~~A~~l~~~m~~~g~~p----d~~t~n~Li--~ay~~~g~~e~A~~l~~~ 630 (856)
.--......|-..-+ ..|+..+...|+.++|...++++......+ +...-...+ ......|+.+.|...+.+
T Consensus 605 ~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 605 EVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 222222222222222 367788888999999999999988643322 222222222 223467888777766655
No 365
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=37.92 E-value=1.2e+02 Score=33.02 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=36.1
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQ 527 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 527 (856)
-|.+.|.+++|...|..-... .| |.++|..-..+|.+...+..|..=.....
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 477888888888887765543 34 77777777777887777776665554444
No 366
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.84 E-value=4.5e+02 Score=26.67 Aligned_cols=129 Identities=18% Similarity=0.114 Sum_probs=72.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 570 EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTC--NSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLL 647 (856)
Q Consensus 570 ~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~--n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll 647 (856)
...|..++.... .+.. +.....+.+....-......+ -.+...+...|++++|..-++..+. .|....+..++
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHH
Confidence 344555555543 3333 444445555542111111122 2345677889999999998887774 34445555544
Q ss_pred H-----HHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q 003028 648 S-----CCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHK 722 (856)
Q Consensus 648 ~-----a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k 722 (856)
. .....+.++++... ++.....+. .......-+|.|..
T Consensus 129 ~lRLArvq~q~~k~D~AL~~-----------------------------------L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 129 ALRLARVQLQQKKADAALKT-----------------------------------LDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHH-----------------------------------HhccccccH--HHHHHHHhhhHHHH
Confidence 3 23344444443333 333322221 22234456789999
Q ss_pred CCChhHHHHHHHHHHhCC
Q 003028 723 SGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 723 ~G~~eeA~~lf~~m~~~~ 740 (856)
.|+.++|...|++..+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 999999999999998875
No 367
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.80 E-value=5.5e+02 Score=27.63 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH----HHHcCCCCCHHH
Q 003028 504 NIMIALQAKARNYQSALKLYRD----MQNAGFEPDKVT 537 (856)
Q Consensus 504 ~~Li~~~~~~g~~~~A~~ll~~----M~~~gi~pd~~t 537 (856)
.-+|..+.+.|.+.+|+.+... +.+..-+|+..+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 3467888888888888876654 344444555443
No 368
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=37.58 E-value=4.5e+02 Score=30.23 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=72.8
Q ss_pred ccCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003028 477 KAGHLQAA-HQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAE 555 (856)
Q Consensus 477 k~g~~~~A-~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~ 555 (856)
..|++-.| .++|+.+....-.|+.+..-+. .+...|.++.+...+...... +.....+..+++....+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 34555544 4556666655444555444333 345678888888777765543 2234456777888888888888888
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 556 AVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ 598 (856)
Q Consensus 556 ~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~ 598 (856)
.+-+-|....++ ++.+.....-..-..|-+|++...|+++..
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 887777766554 344443333334456777888888877764
No 369
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=35.40 E-value=4.7e+02 Score=26.17 Aligned_cols=42 Identities=17% Similarity=0.348 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003028 411 LNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAG 460 (856)
Q Consensus 411 ~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g 460 (856)
+++|.+.|++.... .|+..+|+.-+.... +|-+++.++.+.+
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 34444444444433 577777776666552 4556666665554
No 370
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=35.22 E-value=7.4e+02 Score=28.39 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 003028 399 NRLIHSYGRANYLNEALDVFKQM 421 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m 421 (856)
..+|.-|...|+..+..+.++.+
T Consensus 349 ~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 349 TPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred HHHHHHHHhcCChHHHHHHHHHc
Confidence 44555555666666555555543
No 371
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=35.21 E-value=4.1e+02 Score=25.49 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=54.2
Q ss_pred HHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 003028 457 QAAGLSPDT--FTYSVIINCLGKAGHLQAAHQLFCEMVNQG-----CIPNLVTYNIMIALQAKARN-YQSALKLYRDMQN 528 (856)
Q Consensus 457 ~~~g~~pd~--~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g-----~~pd~~ty~~Li~~~~~~g~-~~~A~~ll~~M~~ 528 (856)
.+.+..++. ...|.++.-....+.+.....+++.+..-. -..+-.+|++++.+..+..- ---+..+|.-|++
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 333444443 234566666666666666666666553210 01244567777777755544 3446677777777
Q ss_pred cCCCCCHHHHHHHHHHHHhc
Q 003028 529 AGFEPDKVTYSIVMEVLGHC 548 (856)
Q Consensus 529 ~gi~pd~~ty~~ll~a~~~~ 548 (856)
.+.+++...|..+|.++.+.
T Consensus 109 ~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcC
Confidence 67777777777777776554
No 372
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=34.78 E-value=74 Score=23.75 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=11.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 003028 436 LIDIHAKAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 436 Ll~~~~k~g~~~~A~~l~~~m~~ 458 (856)
|..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 33444555555555555555443
No 373
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=34.74 E-value=76 Score=19.59 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 607 TCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 607 t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.|..+...|...|++++|...|++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455666667777777777777766654
No 374
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.71 E-value=5.1e+02 Score=27.85 Aligned_cols=47 Identities=30% Similarity=0.337 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHH----HHHHCCCCCCHHHHHHHHH-HHHhcCC
Q 003028 609 NSLLSAFLRVGQLSDAYHLLQ----GMLNLGLKPSLQTYTLLLS-CCTEARS 655 (856)
Q Consensus 609 n~Li~ay~~~g~~e~A~~l~~----~M~~~g~~Pd~~ty~~Ll~-a~~~~g~ 655 (856)
..+|..+.+.|.+.+|+.+.. ++.+.+-+|+..+...+=+ +|.....
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irn 180 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRN 180 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHh
Confidence 467888999999999988755 4445566777766555433 3444443
No 375
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.44 E-value=6.6e+02 Score=27.59 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCC
Q 003028 466 FTYSVIINCLGKAGHLQAAHQLFCEMVN----QGCIPNLVTYNIMIAL-QAKARNYQSALKLYRDMQNAGFE 532 (856)
Q Consensus 466 ~ty~~Li~~y~k~g~~~~A~~lf~~m~~----~g~~pd~~ty~~Li~~-~~~~g~~~~A~~ll~~M~~~gi~ 532 (856)
..+-....-||+.||-+.|.+.+....+ .|.+.|++-+.+-+.. |....-..+-++..+.|.+.|-.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD 176 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD 176 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 3444455667777777777766665443 2555565555443322 23333334444445555555543
No 376
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=34.07 E-value=1.9e+02 Score=27.12 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=13.7
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 565 NWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 565 g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
.+.|++.+...-+.++-+.+|+..|.++|+.++
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 377
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.58 E-value=4.5e+02 Score=27.40 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=18.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003028 436 LIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCL 475 (856)
Q Consensus 436 Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y 475 (856)
+...+-+.++++++.+.+.++...+...+..=.|.|-.+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3444445555555555555555554444444444444444
No 378
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=32.46 E-value=3.8e+02 Score=24.36 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003028 445 FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYR 524 (856)
Q Consensus 445 ~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 524 (856)
..++|..+.+.+...+- ....+--+-+..+...|++++| +.. ......||...|-+|... +.|..+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~--~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLL--PQCHCYPDLEPWAALCAW--KLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHH--HTTS--GGGHHHHHHHHH--HCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHh--cccCCCccHHHHHHHHHH--hhccHHHHHHHHH
Confidence 45666666666665543 1223333334455666666666 111 112234566666555433 5566666666655
Q ss_pred HHHHcC
Q 003028 525 DMQNAG 530 (856)
Q Consensus 525 ~M~~~g 530 (856)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 554433
No 379
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=30.50 E-value=2e+02 Score=34.44 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 535 KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 535 ~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
...-.-++..|.+.|-.+.|.++.+.+-.+-.. ..-|..-+..+.++|+.+....+.+.+.
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH----------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444555555555555555555544332211 2234444555555555555554444444
No 380
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=30.28 E-value=4.9e+02 Score=26.30 Aligned_cols=38 Identities=18% Similarity=0.095 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 341 TVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVR 388 (856)
Q Consensus 341 ~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~ 388 (856)
++++++..++.+ +....-.....|++++|..-++.+.+
T Consensus 20 EE~l~lsRei~r----------~s~~aI~~~H~~~~eeA~~~l~~a~~ 57 (204)
T COG2178 20 EEALKLSREIVR----------LSGEAIFLLHRGDFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455666555543 55555555666777777777666643
No 381
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=30.27 E-value=5.3e+02 Score=25.78 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=36.9
Q ss_pred CCCH-HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003028 602 RPNV-PTCNSLLSAFLRVGQ-----------LSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 602 ~pd~-~t~n~Li~ay~~~g~-----------~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~ 669 (856)
.|+- .++..+..+|...+. +++|.+.|++..+ ..|+..+|..-|..+. .|-.++.++.+.
T Consensus 65 ~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 65 NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 4543 455555555544332 5566666766665 6899999999988874 355566666665
Q ss_pred CC
Q 003028 670 GH 671 (856)
Q Consensus 670 g~ 671 (856)
+.
T Consensus 137 ~~ 138 (186)
T PF06552_consen 137 GL 138 (186)
T ss_dssp SS
T ss_pred Hh
Confidence 54
No 382
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=30.08 E-value=6.8e+02 Score=26.45 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 003028 499 NLVTYNIMIALQAKARNYQSALKLY 523 (856)
Q Consensus 499 d~~ty~~Li~~~~~~g~~~~A~~ll 523 (856)
|......+...|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4455566667777777777776554
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=29.77 E-value=1.4e+02 Score=29.90 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 392 QPNVVTYNRLIHSYGRANYLNEALDVFKQMQVV 424 (856)
Q Consensus 392 ~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~ 424 (856)
.|+..+|..++..+...|+.++|.++.+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 577777777777777777777777777777654
No 384
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=29.64 E-value=1.6e+02 Score=22.30 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=14.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 372 RARQFGAINKLLDQMVRDGCQPNVVTYNRLI 402 (856)
Q Consensus 372 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li 402 (856)
+.|-+.++..+++.|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444555555555545444444444443
No 385
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=29.38 E-value=2.4e+02 Score=30.93 Aligned_cols=54 Identities=15% Similarity=0.030 Sum_probs=37.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 508 ALQAKARNYQSALKLYRDMQNAGFEP-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 508 ~~~~~~g~~~~A~~ll~~M~~~gi~p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
.-|.+.|.+++|++.|..-... .| |.+++..-..+|.+...+..|+.=......
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5677888888888888765543 44 677777777778877777766665555443
No 386
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=29.24 E-value=1.3e+02 Score=36.01 Aligned_cols=28 Identities=11% Similarity=0.105 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQM 421 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m 421 (856)
+...-..++..|.+.|..+.|.++.+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~ 431 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKIL 431 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444455555555555555555555544
No 387
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=29.16 E-value=3e+02 Score=23.96 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHHHH
Q 003028 514 RNYQSALKLYRDMQ 527 (856)
Q Consensus 514 g~~~~A~~ll~~M~ 527 (856)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 388
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=29.03 E-value=1.3e+02 Score=24.24 Aligned_cols=26 Identities=12% Similarity=0.323 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 608 CNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 608 ~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.-.+|.+|.+.|++++|.++++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34556677777777777766666553
No 389
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=28.53 E-value=1.8e+02 Score=22.04 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=20.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 616 LRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLS 648 (856)
Q Consensus 616 ~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~ 648 (856)
.+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345566666666666666666666666665554
No 390
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.87 E-value=4.8e+02 Score=26.62 Aligned_cols=88 Identities=11% Similarity=0.151 Sum_probs=46.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 370 LGRARQFGAINKLLDQMVRDGCQPN-----VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG 444 (856)
Q Consensus 370 ~~k~g~~~~A~~lf~~m~~~g~~pd-----~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g 444 (856)
+.+.|++++|..-|...+.. |++. ...|..-..++.+.+.++.|++-..+..+.+ +.......--..+|-+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 45677777777777776653 3222 1233333455666666666666666665543 111111122233455555
Q ss_pred CHHHHHHHHHHHHHC
Q 003028 445 FLDVAMDMYKKMQAA 459 (856)
Q Consensus 445 ~~~~A~~l~~~m~~~ 459 (856)
.+++|++=|..+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666666666665554
No 391
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.44 E-value=4e+02 Score=33.03 Aligned_cols=76 Identities=22% Similarity=0.189 Sum_probs=41.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 540 IVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVG 619 (856)
Q Consensus 540 ~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g 619 (856)
++|..+.+.|..+-|+.+.+.=+.+ ......+|+++.|++.-..+ -+..+|..|...-..+|
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhc
Confidence 3444455556666555544322110 11234566666666655444 25556677777666777
Q ss_pred CHHHHHHHHHHHHH
Q 003028 620 QLSDAYHLLQGMLN 633 (856)
Q Consensus 620 ~~e~A~~l~~~M~~ 633 (856)
+.+-|.-.|++...
T Consensus 687 n~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTKN 700 (1202)
T ss_pred chHHHHHHHHHhhh
Confidence 77666666666543
No 392
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=27.03 E-value=1.9e+02 Score=22.55 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=19.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 611 LLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLL 647 (856)
Q Consensus 611 Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll 647 (856)
+.-|+.+.|++++|.+..+.+++ +.|+..-...|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 44566667777777777666665 456654444443
No 393
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=26.97 E-value=1.7e+02 Score=23.55 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=8.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 003028 401 LIHSYGRANYLNEALDVFKQM 421 (856)
Q Consensus 401 Li~~~~~~g~~~~A~~lf~~m 421 (856)
+|.+|...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444333
No 394
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=26.55 E-value=53 Score=30.95 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=19.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 371 GRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHS 404 (856)
Q Consensus 371 ~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~ 404 (856)
.+.|.-.+|..+|..|.++|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3445555667777777777766654 6666653
No 395
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=26.39 E-value=7.1e+02 Score=25.46 Aligned_cols=19 Identities=11% Similarity=0.030 Sum_probs=9.1
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003028 405 YGRANYLNEALDVFKQMQV 423 (856)
Q Consensus 405 ~~~~g~~~~A~~lf~~m~~ 423 (856)
+.++|++++|..-|.....
T Consensus 105 ~F~ngdyeeA~skY~~Ale 123 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALE 123 (271)
T ss_pred hhhcccHHHHHHHHHHHHH
Confidence 3444555555555544443
No 396
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.89 E-value=1e+03 Score=27.03 Aligned_cols=40 Identities=23% Similarity=0.227 Sum_probs=23.2
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 503 YNIMIALQAK---ARNYQSALKLYRDMQNAGFEPDKVTYSIVM 542 (856)
Q Consensus 503 y~~Li~~~~~---~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll 542 (856)
+..+++++.+ ..+.+.|+..+..|.+.|..|....-..++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~ 272 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVI 272 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3334444444 367777777777777777666544333333
No 397
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.75 E-value=1e+03 Score=27.02 Aligned_cols=174 Identities=12% Similarity=0.098 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCCC
Q 003028 466 FTYSVIINCLGKAGHLQAAHQLFCEMVNQG--CIPNLVTYNIMIALQAKARNYQSALKLYRDMQNA---------GFEPD 534 (856)
Q Consensus 466 ~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g--~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~---------gi~pd 534 (856)
..+.-+...|..+|+++.|.+.+.+..+.- .+--+..|-.+|..-...|+|.....+..+.... .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 445566777888888888888887754321 0112334555666666677777776666665543 12222
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCC-CHhhHHHHHHHHHhcCCHHHHH-----HHHHHHHHcCCC
Q 003028 535 KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN------WVP-DEPVYGLLVDLWGKAGNVRKAW-----EWYEAMLQAGLR 602 (856)
Q Consensus 535 ~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g------~~p-d~~~y~~Li~~~~k~g~~~~A~-----~l~~~m~~~g~~ 602 (856)
...+..+...+. +++..|.+.|-...... +.| |..+|. .+.+++--++-+--. ..|+.+.+
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~fle---- 303 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLE---- 303 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHh----
Confidence 333333333332 24555554443322211 112 333333 233333333222221 22333332
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHH
Q 003028 603 PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNL-----GLKPSLQTYTLLLS 648 (856)
Q Consensus 603 pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~-----g~~Pd~~ty~~Ll~ 648 (856)
..+..+..+..-| .+++...+++++++... -+.|...++..+|.
T Consensus 304 l~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 304 LEPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred cChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 2344445444444 45788888888887642 24455555555554
No 398
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=25.54 E-value=1.4e+03 Score=28.50 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCH
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNR-LIHSYGRANYL 411 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~-Li~~~~~~g~~ 411 (856)
.++..+.++|+.+.|.++.++.... .+-...|-. .+.+|.++-..
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~~--~~~l~~~f~~y~~A~~~~~~~ 375 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKDF--FEKLAELFPTYFNAYAKNLSS 375 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHhhhcCCCc
Confidence 4677888999999999999888753 222333332 36666666433
No 399
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=25.33 E-value=8.8e+02 Score=26.18 Aligned_cols=23 Identities=0% Similarity=-0.110 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLD 384 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~ 384 (856)
++..+.+.|++-++.+.+.+...
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~ 139 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMR 139 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHH
Confidence 44444555555554444444433
No 400
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.33 E-value=4.6e+02 Score=28.24 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=28.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 471 IINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQN 528 (856)
Q Consensus 471 Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 528 (856)
++..+.+...+....+.+..+. ....-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444455555555555555543 233344456666667777777777766554
No 401
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=25.08 E-value=2.7e+02 Score=27.75 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 601 LRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 601 ~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
..|+..+|..++.++...|+.++|.+..+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357777777777888888888888777777765
No 402
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=24.89 E-value=8.4e+02 Score=25.76 Aligned_cols=148 Identities=17% Similarity=0.127 Sum_probs=77.2
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCC
Q 003028 339 DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILG----RARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGR----ANY 410 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~----k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~----~g~ 410 (856)
++..|...+...... + +......+...|. ...+...|..+|..+.+.|. ......|-..|.. ..+
T Consensus 56 ~~~~a~~~~~~a~~~-~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 56 DYAKALKSYEKAAEL-G---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred cHHHHHHHHHHhhhc-C---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccC
Confidence 444555555555431 1 1223333333333 23456778888887766543 2233334444444 337
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cC
Q 003028 411 LNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG-------FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK----AG 479 (856)
Q Consensus 411 ~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g-------~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k----~g 479 (856)
..+|..+|++.-+.|..+-..+...+-..|..-. +...|...|.+.-..+ +......|-.+|.. ..
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCc
Confidence 7888888888887774443222333333333321 2336777777766665 33344444444422 33
Q ss_pred CHHHHHHHHHHHHHcCC
Q 003028 480 HLQAAHQLFCEMVNQGC 496 (856)
Q Consensus 480 ~~~~A~~lf~~m~~~g~ 496 (856)
++++|...|....+.|.
T Consensus 206 d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 66777777777666653
No 403
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=24.69 E-value=8.2e+02 Score=27.51 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=38.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHHc
Q 003028 368 GILGRARQFGAINKLLDQMVRDGCQPNVV--TYNRLIHSYGR--ANYLNEALDVFKQMQVV 424 (856)
Q Consensus 368 ~~~~k~g~~~~A~~lf~~m~~~g~~pd~~--ty~~Li~~~~~--~g~~~~A~~lf~~m~~~ 424 (856)
..+...+++..|.++|+++..+ ++++.. .|..|..+|.. .-++++|.+.|+.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445788899999999998876 555444 45555565544 45677888888877643
No 404
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=24.62 E-value=1.5e+02 Score=32.03 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=28.3
Q ss_pred CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003028 392 QPNVVT-YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTY 433 (856)
Q Consensus 392 ~pd~~t-y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty 433 (856)
.||... |+..|....+.|++++|+.++++.++.|+.--..+|
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 345444 467777778888888888888888777755444443
No 405
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=24.47 E-value=8.4e+02 Score=25.61 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=52.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CC-----------CCCCHHHHHHHHH
Q 003028 581 GKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN-LG-----------LKPSLQTYTLLLS 648 (856)
Q Consensus 581 ~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~-~g-----------~~Pd~~ty~~Ll~ 648 (856)
.+..+..--.++.+-....+++-+..-..+++ +...|+...|+..++.-.. .| -.|......-++.
T Consensus 170 sklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~ 247 (333)
T KOG0991|consen 170 SKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQ 247 (333)
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHH
Confidence 33333333333333333333433333333333 3445666666555554332 11 2577777788888
Q ss_pred HHHhcCCcchHHHHHHHHHHcCCChHHHHHh
Q 003028 649 CCTEARSPYDMGFCHELMAVSGHPAHMFLLS 679 (856)
Q Consensus 649 a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~ 679 (856)
.|.+ ++.++|.++++.+.+.|+.+.+.+..
T Consensus 248 ~~~~-~~~~~A~~il~~lw~lgysp~Dii~~ 277 (333)
T KOG0991|consen 248 ACLK-RNIDEALKILAELWKLGYSPEDIITT 277 (333)
T ss_pred HHHh-ccHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 7755 45678888888888888866555443
No 406
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=24.15 E-value=2.9e+02 Score=33.03 Aligned_cols=92 Identities=15% Similarity=0.074 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCCHHHHHH
Q 003028 539 SIVMEVLGHCGYLDEAEAVFAEMRRK--NWVPDEPVYGLLVDLWGKAGNVR------KAWEWYEAMLQAGLRPNVPTCNS 610 (856)
Q Consensus 539 ~~ll~a~~~~g~~~~A~~l~~~m~~~--g~~pd~~~y~~Li~~~~k~g~~~------~A~~l~~~m~~~g~~pd~~t~n~ 610 (856)
.+|+++|...|++..+.++++..... |-+.-...||..|+.+.+.|.++ .|.++++... +.-|..||..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 37999999999999999999988754 33344567889999999999764 3444444333 5568888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 003028 611 LLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 611 Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
|+++-..--+-.-.+-++.+.+.
T Consensus 109 l~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHHHH
Confidence 88776553333334444555443
No 407
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=23.78 E-value=3.4e+02 Score=25.94 Aligned_cols=66 Identities=24% Similarity=0.137 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 003028 591 EWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPY 657 (856)
Q Consensus 591 ~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~ 657 (856)
.+.+.+.+.|++++.. -..++..+.+.++.-.|.++++++.+.+...+..|....|+.+.+.|-..
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 4455666777776654 35677788888888899999999999887888888888888888888643
No 408
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=23.63 E-value=4.9e+02 Score=22.63 Aligned_cols=42 Identities=24% Similarity=0.357 Sum_probs=24.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003028 451 DMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMV 492 (856)
Q Consensus 451 ~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~ 492 (856)
++|+-....|+..|...|.++++.+.-.=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555555666666666666665555555555555555554
No 409
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=23.16 E-value=3.7e+02 Score=25.66 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=8.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 003028 542 MEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 542 l~a~~~~g~~~~A~~l~~~m~~ 563 (856)
++.+...++.-.|+++++.+.+
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~ 48 (145)
T COG0735 27 LELLLEADGHLSAEELYEELRE 48 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHH
Confidence 3333333333444444444443
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.00 E-value=7.5e+02 Score=27.84 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=25.2
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 003028 476 GKAGHLQAAHQLFCEMVNQGCIPNLV--TYNIMIALQA--KARNYQSALKLYRDMQ 527 (856)
Q Consensus 476 ~k~g~~~~A~~lf~~m~~~g~~pd~~--ty~~Li~~~~--~~g~~~~A~~ll~~M~ 527 (856)
...+++..|.++|+.+... ++++.. .|..+..+|. ..-++.+|.+.++...
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3556666666666666654 333332 2333333333 2344555555555544
No 411
>PHA01351 putative minor structural protein
Probab=22.68 E-value=1.4e+03 Score=27.63 Aligned_cols=96 Identities=15% Similarity=0.080 Sum_probs=48.3
Q ss_pred HHHHhhcCCCC-C----HHHHHHHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHhcCC--HHHHHHHH
Q 003028 315 EEALGNTNYSM-D----AYQANQVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTM----VGILGRARQ--FGAINKLL 383 (856)
Q Consensus 315 ~~~l~~~~~~~-~----~~~~~~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~L----i~~~~k~g~--~~~A~~lf 383 (856)
.+++.+.|..- | ..+..++.+.++-+.+...+|+.|..+.. ..-+|.| +.-..+.|- .+++.+.|
T Consensus 431 sralsnfgrpyid~~yl~st~~~lfkel~~p~~v~~~f~~mi~qsq----liq~nqll~~~l~sl~skGi~DqkkIke~L 506 (1070)
T PHA01351 431 SRALSNFGRPYLDFKYLDSTIAKLFKDLGYPEEVRTVFDTMITQSQ----LIQTNQLLLRQLQQIVSLGIFDQKKIKEEL 506 (1070)
T ss_pred HHHHHhCCCcceehHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHcccccHHHHHHHH
Confidence 34555555332 2 22445666666777777777777765432 2223333 333444553 33444443
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003028 384 DQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFK 419 (856)
Q Consensus 384 ~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~ 419 (856)
...|+ +...-..++..+.+--..+..+++++
T Consensus 507 ---Ka~gf--nks~~d~~L~~~~n~a~iesqIK~LQ 537 (1070)
T PHA01351 507 ---KANKF--NEQVALQILESELQFAQLQNQLKEYQ 537 (1070)
T ss_pred ---HhcCc--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 44444555555555555555555554
No 412
>PRK11619 lytic murein transglycosylase; Provisional
Probab=22.64 E-value=1.4e+03 Score=27.69 Aligned_cols=254 Identities=14% Similarity=0.092 Sum_probs=129.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
.-...+..+.+.+++.....++.. .+.+...-..+..+....|+.++|.+....+-..| ......++.++..+.
T Consensus 101 Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~ 174 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQ 174 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHH
Confidence 334445556666777666552211 13455555666677777888777777777665555 344566777777777
Q ss_pred HcCCHHHH--HHHHHHHHHCCC-----------CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 442 KAGFLDVA--MDMYKKMQAAGL-----------SPD-TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMI 507 (856)
Q Consensus 442 k~g~~~~A--~~l~~~m~~~g~-----------~pd-~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li 507 (856)
+.|.+... .+=++.+...|- .++ ......++..+.. ...+..++.. +.++...-..++
T Consensus 175 ~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~-----~~~~~~~~~~~~ 246 (644)
T PRK11619 175 QSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFART-----TGPTDFTRQMAA 246 (644)
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhc-----cCCChhhHHHHH
Confidence 66543332 222222222221 111 1111122222211 1111111111 112221112122
Q ss_pred HHHH--HcCCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 003028 508 ALQA--KARNYQSALKLYRDMQNA-GFEPDK--VTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGK 582 (856)
Q Consensus 508 ~~~~--~~g~~~~A~~ll~~M~~~-gi~pd~--~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k 582 (856)
.++. ...+.+.|..++..+... ++.+.. ..+..+.......+...++...++...... .+......-+....+
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~ 324 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALG 324 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHH
Confidence 2222 344568888888877443 233222 123333333333322556666666544322 244555666666668
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 583 AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGML 632 (856)
Q Consensus 583 ~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~ 632 (856)
.++++.+...+..|.... .-...-.--+..++...|+.++|..+|+...
T Consensus 325 ~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 325 TGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred ccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 899999888888886432 2223333346677777899999999998874
No 413
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.50 E-value=8.8e+02 Score=27.59 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--C-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003028 432 TYCTLIDIHAKAGFLDVAMDMYKKMQAA--G-----LSPDTFTYSVIINCLGKAGHLQAAHQLFCEMV 492 (856)
Q Consensus 432 ty~~Ll~~~~k~g~~~~A~~l~~~m~~~--g-----~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~ 492 (856)
+...|++.++-.||+..|+++++.+.-. + ..-.+.+|--+--+|.-.+++.+|.++|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888888888888765321 1 11234455566677788888888888887765
No 414
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=22.42 E-value=4.6e+02 Score=22.84 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=37.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 449 AMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSAL 520 (856)
Q Consensus 449 A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 520 (856)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. +| ...|..++.++-..|..+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 44566666666542 33333333333335577777777777777 42 234667777777666655443
No 415
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=22.35 E-value=2.5e+02 Score=24.00 Aligned_cols=20 Identities=15% Similarity=0.301 Sum_probs=9.4
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 003028 608 CNSLLSAFLRVGQLSDAYHL 627 (856)
Q Consensus 608 ~n~Li~ay~~~g~~e~A~~l 627 (856)
+..|+.+|+..|++++++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444443
No 416
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=22.08 E-value=3.8e+02 Score=32.11 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDG--CQPNVVTYNRLIHSYGRANYLN------EALDVFKQMQVVGCEPDRVTYCTL 436 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g--~~pd~~ty~~Li~~~~~~g~~~------~A~~lf~~m~~~g~~pd~~ty~~L 436 (856)
.|+.+|...|++..+.++++.+.... -+.=...||..|+.+.+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67888888888888888888776532 1223456777777777777643 3444444443 44567777777
Q ss_pred HHHHHHc
Q 003028 437 IDIHAKA 443 (856)
Q Consensus 437 l~~~~k~ 443 (856)
+.+-...
T Consensus 110 ~~~sln~ 116 (1117)
T COG5108 110 CQASLNP 116 (1117)
T ss_pred HHhhcCh
Confidence 6655443
No 417
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=22.07 E-value=3.8e+02 Score=25.19 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 003028 519 ALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLV 577 (856)
Q Consensus 519 A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li 577 (856)
..+.+..+....+.|+.......+.+|-+.+++..|.++|+-++.+ +.+...+|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 4445556666677888888888888888888888888888877653 222333454443
No 418
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=21.47 E-value=95 Score=29.29 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=28.8
Q ss_pred HHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003028 333 VLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGIL 370 (856)
Q Consensus 333 vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~ 370 (856)
-++..+....|..+|.+|.. .|..|| .|+.|+...
T Consensus 104 tlR~ygsk~DaY~VF~kML~-~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLE-RGNPPD--DWDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHh-CCCCCc--cHHHHHHHh
Confidence 46677788899999999995 788888 899998754
No 419
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=20.91 E-value=1.6e+02 Score=31.78 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=22.9
Q ss_pred CCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 003028 463 PDTFT-YSVIINCLGKAGHLQAAHQLFCEMVNQGCI 497 (856)
Q Consensus 463 pd~~t-y~~Li~~y~k~g~~~~A~~lf~~m~~~g~~ 497 (856)
||..+ |+..|....+.||+++|++++++.+..|..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44443 456777777777777777777777766654
No 420
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=20.76 E-value=2e+02 Score=24.58 Aligned_cols=45 Identities=11% Similarity=-0.036 Sum_probs=34.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCcchHHH
Q 003028 617 RVGQLSDAYHLLQGMLNLGLKPSL--QTYTLLLSCCTEARSPYDMGF 661 (856)
Q Consensus 617 ~~g~~e~A~~l~~~M~~~g~~Pd~--~ty~~Ll~a~~~~g~~~~a~~ 661 (856)
...+.++|+..|...++.-..|.. .++..++.++++.|+++++..
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999875433332 578888999999998776654
No 421
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.68 E-value=1e+03 Score=25.32 Aligned_cols=92 Identities=14% Similarity=0.221 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc------------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH
Q 003028 539 SIVMEVLGHCGYLDEAEAVFAEMRRK------------NWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA-GLRPNV 605 (856)
Q Consensus 539 ~~ll~a~~~~g~~~~A~~l~~~m~~~------------g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~-g~~pd~ 605 (856)
+-|-..|...+.+....++++++.+. |. --..+|..=|++|....+-.+...++++.... .--|.+
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGt-QLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGT-QLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccc-hhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 44555666666666666676666542 11 12456888888998888888888888876632 233444
Q ss_pred HHHHHHHHHH-----HHcCCHHHHHHH-HHHHH
Q 003028 606 PTCNSLLSAF-----LRVGQLSDAYHL-LQGML 632 (856)
Q Consensus 606 ~t~n~Li~ay-----~~~g~~e~A~~l-~~~M~ 632 (856)
.... +|+-| .+.|++++|..= |+...
T Consensus 228 lImG-vIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 228 LIMG-VIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred HHHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence 4333 33333 466788887643 44333
No 422
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.66 E-value=1.3e+03 Score=26.29 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVG--CEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g--~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~ 459 (856)
.+.-+...|..+|+++.|++.|.+.+..- .+..+..|-.+|..-.-.|+|..+..+..+.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 45566677888888888888888755431 1223444555666666677777777666665543
No 423
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=20.49 E-value=3.5e+02 Score=24.12 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 003028 400 RLIHSYGRANYLNEALDVFKQM 421 (856)
Q Consensus 400 ~Li~~~~~~g~~~~A~~lf~~m 421 (856)
.+|.-|...++.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555566666666666555
No 424
>PRK09857 putative transposase; Provisional
Probab=20.21 E-value=5.3e+02 Score=27.87 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003028 575 LLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS 639 (856)
Q Consensus 575 ~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd 639 (856)
.++....+.++.++-.++++.+.+. .+.......++..-+.+.|.-++++++.++|+..|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333334445555455555555433 222222333444555555555667777777777776655
Done!