Query 003028
Match_columns 856
No_of_seqs 766 out of 4037
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 10:40:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.1E-29 7.3E-34 297.7 35.8 440 326-791 83-584 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.7E-29 1.3E-33 295.6 28.9 440 358-821 82-578 (597)
3 4g26_A Pentatricopeptide repea 100.0 2.4E-28 8.1E-33 282.8 25.9 203 345-548 11-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 3.6E-28 1.2E-32 281.3 26.2 207 377-583 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 2.1E-20 7.2E-25 208.6 47.9 360 334-739 9-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 2.2E-19 7.5E-24 200.3 43.8 330 332-671 41-370 (388)
7 2y4t_A DNAJ homolog subfamily 99.8 1.1E-17 3.9E-22 189.6 40.4 293 336-641 38-363 (450)
8 2gw1_A Mitochondrial precursor 99.8 1E-17 3.5E-22 192.9 36.4 394 335-740 17-479 (514)
9 2y4t_A DNAJ homolog subfamily 99.8 4.1E-17 1.4E-21 185.0 39.6 313 359-739 25-358 (450)
10 2gw1_A Mitochondrial precursor 99.8 1.2E-16 4.2E-21 183.9 34.5 342 325-675 37-484 (514)
11 3fp2_A TPR repeat-containing p 99.8 3.1E-15 1.1E-19 173.4 40.5 390 336-741 37-493 (537)
12 3ieg_A DNAJ homolog subfamily 99.7 1.6E-14 5.3E-19 157.3 40.9 288 337-633 16-334 (359)
13 3ieg_A DNAJ homolog subfamily 99.7 5.5E-14 1.9E-18 153.0 42.2 309 359-675 2-341 (359)
14 3hym_B Cell division cycle pro 99.7 1.1E-14 3.7E-19 157.0 33.1 290 358-655 20-320 (330)
15 3fp2_A TPR repeat-containing p 99.7 4.4E-14 1.5E-18 163.7 36.9 324 333-671 68-493 (537)
16 3spa_A Mtrpol, DNA-directed RN 99.7 6.6E-17 2.3E-21 192.5 12.7 115 361-475 128-246 (1134)
17 3spa_A Mtrpol, DNA-directed RN 99.7 7.1E-17 2.4E-21 192.2 11.6 118 395-512 127-248 (1134)
18 1fch_A Peroxisomal targeting s 99.7 8.1E-15 2.8E-19 161.2 26.3 287 338-629 39-354 (368)
19 3hym_B Cell division cycle pro 99.7 1.3E-13 4.4E-18 148.5 34.5 283 332-622 30-322 (330)
20 1fch_A Peroxisomal targeting s 99.7 1.3E-14 4.4E-19 159.5 26.9 289 371-664 36-354 (368)
21 4eqf_A PEX5-related protein; a 99.6 3.2E-14 1.1E-18 156.7 25.5 265 360-630 65-352 (365)
22 3cv0_A Peroxisome targeting si 99.6 9.6E-14 3.3E-18 149.3 28.5 265 362-632 23-313 (327)
23 4eqf_A PEX5-related protein; a 99.6 3.5E-14 1.2E-18 156.5 24.8 266 394-663 64-350 (365)
24 2xm6_A Protein corresponding t 99.6 2.5E-11 8.4E-16 140.0 47.8 338 338-741 57-434 (490)
25 3cv0_A Peroxisome targeting si 99.6 4.3E-13 1.5E-17 144.2 28.9 262 395-664 21-310 (327)
26 2ooe_A Cleavage stimulation fa 99.6 2.1E-11 7.2E-16 142.0 42.8 402 328-739 14-492 (530)
27 3mkr_A Coatomer subunit epsilo 99.6 9.5E-13 3.2E-17 141.4 27.5 255 368-641 7-269 (291)
28 1b89_A Protein (clathrin heavy 99.6 1.8E-14 6.3E-19 160.2 14.3 240 372-653 15-254 (449)
29 4g1t_A Interferon-induced prot 99.6 8.5E-12 2.9E-16 142.2 36.9 366 359-741 50-461 (472)
30 3mkr_A Coatomer subunit epsilo 99.5 1.4E-12 4.8E-17 140.0 27.9 254 402-671 6-266 (291)
31 1b89_A Protein (clathrin heavy 99.5 5.1E-14 1.8E-18 156.7 16.9 257 329-628 8-266 (449)
32 2xm6_A Protein corresponding t 99.5 1.1E-10 3.7E-15 134.6 45.3 307 337-671 92-434 (490)
33 2ooe_A Cleavage stimulation fa 99.5 1.8E-11 6.3E-16 142.6 34.2 374 358-740 11-455 (530)
34 3uq3_A Heat shock protein STI1 99.5 1.1E-11 3.7E-16 128.2 27.6 222 398-633 8-235 (258)
35 3uq3_A Heat shock protein STI1 99.4 2.3E-11 8E-16 125.7 26.6 226 360-599 5-236 (258)
36 1xi4_A Clathrin heavy chain; a 99.4 2.5E-10 8.5E-15 140.4 38.2 318 363-730 1052-1375(1630)
37 2ho1_A Type 4 fimbrial biogene 99.4 1.1E-10 3.7E-15 120.9 27.0 197 433-633 40-237 (252)
38 1ouv_A Conserved hypothetical 99.4 5.7E-10 1.9E-14 117.5 32.7 220 396-633 7-250 (273)
39 2vq2_A PILW, putative fimbrial 99.4 1.9E-10 6.4E-15 116.1 27.3 201 395-633 8-210 (225)
40 2vq2_A PILW, putative fimbrial 99.4 3.8E-10 1.3E-14 113.8 28.9 203 359-564 7-211 (225)
41 1ouv_A Conserved hypothetical 99.4 2.1E-09 7.1E-14 113.1 35.6 232 429-678 5-260 (273)
42 1xnf_A Lipoprotein NLPI; TPR, 99.4 2E-11 6.9E-16 127.8 19.5 245 374-628 19-269 (275)
43 2ho1_A Type 4 fimbrial biogene 99.4 2E-10 6.9E-15 118.8 26.7 200 360-563 37-237 (252)
44 2pl2_A Hypothetical conserved 99.4 7.7E-11 2.6E-15 120.4 22.9 90 538-630 121-210 (217)
45 2pl2_A Hypothetical conserved 99.3 9E-11 3.1E-15 119.9 23.1 199 393-597 3-212 (217)
46 3u4t_A TPR repeat-containing p 99.3 1.5E-10 5.3E-15 121.0 25.0 228 402-633 10-249 (272)
47 1xi4_A Clathrin heavy chain; a 99.3 9.3E-09 3.2E-13 126.7 43.1 260 324-633 1049-1308(1630)
48 4g1t_A Interferon-induced prot 99.3 2.2E-09 7.7E-14 122.1 35.4 300 332-640 59-405 (472)
49 1xnf_A Lipoprotein NLPI; TPR, 99.3 6.5E-11 2.2E-15 123.9 20.0 246 338-593 19-269 (275)
50 2q7f_A YRRB protein; TPR, prot 99.3 1.5E-10 5.3E-15 118.6 22.3 162 361-526 24-185 (243)
51 3u4t_A TPR repeat-containing p 99.3 3.3E-10 1.1E-14 118.5 25.1 245 362-611 5-261 (272)
52 2q7f_A YRRB protein; TPR, prot 99.3 2.2E-10 7.6E-15 117.4 22.7 212 394-611 22-233 (243)
53 4a1s_A PINS, partner of inscut 99.3 9.4E-11 3.2E-15 130.8 20.1 271 362-633 50-371 (411)
54 3sf4_A G-protein-signaling mod 99.3 2.3E-10 7.9E-15 126.7 22.4 275 358-633 7-335 (406)
55 2h6f_A Protein farnesyltransfe 99.3 1.3E-09 4.4E-14 121.5 27.9 249 360-616 97-364 (382)
56 3ro2_A PINS homolog, G-protein 99.3 2.5E-10 8.6E-15 122.1 21.2 271 362-633 7-331 (338)
57 2h6f_A Protein farnesyltransfe 99.2 1.4E-09 4.8E-14 121.1 26.4 240 395-643 97-355 (382)
58 4a1s_A PINS, partner of inscut 99.2 2.8E-10 9.5E-15 127.0 20.4 274 397-671 50-374 (411)
59 2ond_A Cleavage stimulation fa 99.2 1.3E-08 4.3E-13 109.6 31.1 217 412-633 33-269 (308)
60 3sf4_A G-protein-signaling mod 99.2 1E-09 3.5E-14 121.5 22.9 275 392-667 6-334 (406)
61 3nf1_A KLC 1, kinesin light ch 99.2 1.6E-10 5.6E-15 122.9 14.6 245 360-633 27-306 (311)
62 3ro2_A PINS homolog, G-protein 99.2 6.8E-10 2.3E-14 118.7 19.6 272 397-669 7-332 (338)
63 3ulq_A Response regulator aspa 99.1 3.5E-09 1.2E-13 117.5 23.9 291 338-633 26-367 (383)
64 3nf1_A KLC 1, kinesin light ch 99.1 3.6E-10 1.2E-14 120.2 15.2 235 335-598 38-306 (311)
65 3vtx_A MAMA; tetratricopeptide 99.1 1.3E-08 4.6E-13 99.9 24.0 171 464-640 4-174 (184)
66 2ond_A Cleavage stimulation fa 99.1 5.6E-08 1.9E-12 104.5 30.4 218 377-599 33-270 (308)
67 3vtx_A MAMA; tetratricopeptide 99.1 2.3E-08 7.8E-13 98.2 24.4 167 359-529 4-170 (184)
68 3e4b_A ALGK; tetratricopeptide 99.1 4.7E-09 1.6E-13 119.8 21.3 340 333-741 12-389 (452)
69 1hz4_A MALT regulatory protein 99.1 6.3E-08 2.1E-12 106.6 29.8 271 363-633 17-321 (373)
70 3e4b_A ALGK; tetratricopeptide 99.1 1.1E-08 3.9E-13 116.6 24.1 304 341-671 55-389 (452)
71 3ulq_A Response regulator aspa 99.1 7.5E-09 2.5E-13 114.8 21.9 295 371-668 23-367 (383)
72 4abn_A Tetratricopeptide repea 99.0 7.5E-09 2.6E-13 118.9 21.5 223 376-631 84-318 (474)
73 4abn_A Tetratricopeptide repea 99.0 6.7E-09 2.3E-13 119.2 20.8 213 446-666 84-318 (474)
74 3as5_A MAMA; tetratricopeptide 99.0 4.1E-08 1.4E-12 95.2 21.4 163 362-528 10-172 (186)
75 1hz4_A MALT regulatory protein 99.0 2.2E-07 7.7E-12 102.1 28.8 270 399-668 18-321 (373)
76 3as5_A MAMA; tetratricopeptide 98.9 7.7E-08 2.6E-12 93.2 21.1 163 397-563 10-172 (186)
77 3q15_A PSP28, response regulat 98.9 2.4E-07 8.1E-12 102.5 27.1 233 472-738 108-364 (378)
78 3q15_A PSP28, response regulat 98.9 9.5E-08 3.2E-12 105.8 22.9 223 440-666 111-362 (378)
79 3edt_B KLC 2, kinesin light ch 98.9 1.4E-08 4.9E-13 105.8 15.3 134 395-528 43-197 (283)
80 4e6h_A MRNA 3'-END-processing 98.9 3.8E-06 1.3E-10 99.9 37.7 412 324-741 63-572 (679)
81 3edt_B KLC 2, kinesin light ch 98.9 1.7E-08 5.8E-13 105.2 15.2 226 407-633 13-280 (283)
82 4gyw_A UDP-N-acetylglucosamine 98.8 2E-07 6.8E-12 112.1 22.0 166 359-528 8-173 (723)
83 4i17_A Hypothetical protein; T 98.8 6.3E-07 2.2E-11 91.1 22.3 206 428-647 5-220 (228)
84 4gyw_A UDP-N-acetylglucosamine 98.8 3.3E-07 1.1E-11 110.2 22.8 165 394-563 8-173 (723)
85 4i17_A Hypothetical protein; T 98.7 1.1E-06 3.8E-11 89.3 22.9 196 358-565 5-210 (228)
86 1qqe_A Vesicular transport pro 98.7 2.7E-07 9.1E-12 98.5 17.7 166 466-633 78-268 (292)
87 2fo7_A Synthetic consensus TPR 98.7 8E-07 2.7E-11 80.7 18.6 126 363-491 4-129 (136)
88 2fo7_A Synthetic consensus TPR 98.7 9.5E-07 3.3E-11 80.2 18.8 131 397-530 3-133 (136)
89 4e6h_A MRNA 3'-END-processing 98.7 9.6E-06 3.3E-10 96.4 31.3 393 342-741 50-535 (679)
90 1qqe_A Vesicular transport pro 98.6 4.8E-07 1.6E-11 96.5 16.1 178 445-639 32-231 (292)
91 3mv2_B Coatomer subunit epsilo 98.5 6.6E-06 2.3E-10 87.7 22.0 144 449-597 85-238 (310)
92 3mv2_B Coatomer subunit epsilo 98.5 1.6E-05 5.6E-10 84.7 24.7 244 404-671 22-284 (310)
93 3qky_A Outer membrane assembly 98.5 4.1E-06 1.4E-10 87.1 19.6 100 359-459 14-126 (261)
94 3qky_A Outer membrane assembly 98.5 7E-06 2.4E-10 85.3 20.6 86 338-423 29-125 (261)
95 3urz_A Uncharacterized protein 98.4 1.8E-05 6.2E-10 79.5 19.3 159 364-528 8-185 (208)
96 3dra_A Protein farnesyltransfe 98.4 0.00017 5.7E-09 77.3 27.7 230 377-611 50-299 (306)
97 3urz_A Uncharacterized protein 98.4 1.7E-05 5.8E-10 79.7 19.0 187 398-611 7-196 (208)
98 3rjv_A Putative SEL1 repeat pr 98.4 2.6E-05 9E-10 78.6 20.4 86 548-635 102-198 (212)
99 2yhc_A BAMD, UPF0169 lipoprote 98.3 3.5E-05 1.2E-09 78.3 21.3 185 360-565 4-214 (225)
100 2pzi_A Probable serine/threoni 98.3 5.1E-06 1.8E-10 99.6 16.6 173 441-620 402-583 (681)
101 2ifu_A Gamma-SNAP; membrane fu 98.3 1.9E-05 6.3E-10 84.7 19.1 128 338-492 5-142 (307)
102 2yhc_A BAMD, UPF0169 lipoprote 98.3 6.4E-05 2.2E-09 76.3 22.0 183 430-633 4-212 (225)
103 3qou_A Protein YBBN; thioredox 98.3 1.4E-05 4.8E-10 84.9 17.7 162 465-632 117-282 (287)
104 3rjv_A Putative SEL1 repeat pr 98.3 4E-05 1.4E-09 77.3 19.9 106 379-494 5-118 (212)
105 2r5s_A Uncharacterized protein 98.3 8.4E-06 2.9E-10 79.4 14.0 160 363-526 9-170 (176)
106 2vsy_A XCC0866; transferase, g 98.3 1.6E-05 5.5E-10 93.0 19.0 151 339-494 4-157 (568)
107 3qou_A Protein YBBN; thioredox 98.3 1.7E-05 5.8E-10 84.2 17.4 164 359-526 116-281 (287)
108 2ifu_A Gamma-SNAP; membrane fu 98.3 1.3E-05 4.4E-10 86.0 16.6 129 373-527 4-142 (307)
109 2r5s_A Uncharacterized protein 98.3 9.4E-06 3.2E-10 79.1 14.2 162 398-563 9-172 (176)
110 3dra_A Protein farnesyltransfe 98.3 0.00016 5.5E-09 77.4 24.6 221 408-633 46-286 (306)
111 2pzi_A Probable serine/threoni 98.3 7.5E-06 2.6E-10 98.2 15.7 174 336-515 403-583 (681)
112 3u3w_A Transcriptional activat 98.2 7.9E-05 2.7E-09 79.0 21.9 162 472-633 82-265 (293)
113 2vsy_A XCC0866; transferase, g 98.2 2.4E-05 8.2E-10 91.5 19.0 154 373-530 2-158 (568)
114 2uy1_A Cleavage stimulation fa 98.2 0.00046 1.6E-08 79.1 28.8 203 517-738 196-412 (493)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.2 8.6E-05 2.9E-09 73.9 19.5 127 363-494 9-150 (213)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.2 0.00012 4E-09 73.0 19.8 129 397-530 8-151 (213)
117 1a17_A Serine/threonine protei 98.1 8.8E-05 3E-09 70.2 17.7 126 398-526 16-143 (166)
118 2qfc_A PLCR protein; TPR, HTH, 98.1 0.00041 1.4E-08 73.4 24.4 163 362-525 77-262 (293)
119 1na0_A Designed protein CTPR3; 98.1 0.00011 3.8E-09 65.3 16.9 94 362-457 11-104 (125)
120 4ga2_A E3 SUMO-protein ligase 98.1 1.2E-05 3.9E-10 76.5 10.7 84 433-518 34-117 (150)
121 3u3w_A Transcriptional activat 98.1 0.0004 1.4E-08 73.4 23.3 160 367-526 82-263 (293)
122 1a17_A Serine/threonine protei 98.1 0.00014 4.7E-09 68.9 17.7 130 361-493 14-145 (166)
123 1na0_A Designed protein CTPR3; 98.1 0.00015 5E-09 64.6 16.9 117 395-514 9-125 (125)
124 2uy1_A Cleavage stimulation fa 98.1 0.0027 9.4E-08 72.7 31.6 83 338-423 28-117 (493)
125 4ga2_A E3 SUMO-protein ligase 98.1 9.9E-06 3.4E-10 77.0 9.4 84 364-449 35-118 (150)
126 3gw4_A Uncharacterized protein 98.0 4.3E-05 1.5E-09 75.3 13.4 156 477-633 4-175 (203)
127 3q7a_A Farnesyltransferase alp 98.0 0.0014 4.9E-08 71.0 26.1 136 339-479 69-215 (349)
128 3gw4_A Uncharacterized protein 98.0 5.5E-05 1.9E-09 74.5 13.9 155 372-527 4-174 (203)
129 2qfc_A PLCR protein; TPR, HTH, 98.0 0.00018 6E-09 76.3 18.4 127 506-632 121-264 (293)
130 2vyi_A SGTA protein; chaperone 98.0 0.00015 5.2E-09 65.0 15.2 59 363-422 15-73 (131)
131 2vyi_A SGTA protein; chaperone 97.9 0.00021 7.1E-09 64.1 15.2 120 394-516 11-130 (131)
132 2lni_A Stress-induced-phosphop 97.9 0.00016 5.5E-09 65.4 14.3 97 360-458 16-112 (133)
133 2lni_A Stress-induced-phosphop 97.9 0.0002 6.8E-09 64.8 14.5 119 393-514 14-132 (133)
134 3q7a_A Farnesyltransferase alp 97.9 0.0032 1.1E-07 68.3 25.7 184 362-550 56-257 (349)
135 4gco_A Protein STI-1; structur 97.9 0.0004 1.4E-08 63.6 16.1 96 362-459 15-110 (126)
136 4gco_A Protein STI-1; structur 97.9 0.0004 1.4E-08 63.7 15.7 96 397-494 15-110 (126)
137 1p5q_A FKBP52, FK506-binding p 97.8 0.00036 1.2E-08 75.8 17.8 129 360-492 147-292 (336)
138 4f3v_A ESX-1 secretion system 97.8 0.00019 6.4E-09 75.5 14.6 89 471-562 108-198 (282)
139 1p5q_A FKBP52, FK506-binding p 97.8 0.00036 1.2E-08 75.8 17.2 146 464-632 146-292 (336)
140 2e2e_A Formate-dependent nitri 97.8 0.00018 6.2E-09 69.5 13.3 118 373-493 23-143 (177)
141 2c2l_A CHIP, carboxy terminus 97.8 0.00015 5.2E-09 76.5 13.7 96 431-528 5-100 (281)
142 2e2e_A Formate-dependent nitri 97.8 0.00014 4.9E-09 70.2 12.4 122 406-530 21-145 (177)
143 2c2l_A CHIP, carboxy terminus 97.8 9.9E-05 3.4E-09 78.0 11.7 98 394-493 3-100 (281)
144 1elw_A TPR1-domain of HOP; HOP 97.7 0.001 3.5E-08 58.3 15.8 58 363-421 7-64 (118)
145 3gyz_A Chaperone protein IPGC; 97.7 0.00042 1.4E-08 66.0 13.7 98 360-459 36-133 (151)
146 1elw_A TPR1-domain of HOP; HOP 97.7 0.0014 4.8E-08 57.4 16.4 112 394-508 3-114 (118)
147 3upv_A Heat shock protein STI1 97.7 0.00095 3.2E-08 60.3 15.1 95 537-633 6-100 (126)
148 4f3v_A ESX-1 secretion system 97.7 0.00055 1.9E-08 71.9 15.1 188 372-565 18-238 (282)
149 3gyz_A Chaperone protein IPGC; 97.6 0.00047 1.6E-08 65.6 13.0 98 395-494 36-133 (151)
150 4b4t_Q 26S proteasome regulato 97.6 0.0027 9.2E-08 70.5 21.2 165 433-597 58-243 (434)
151 2dba_A Smooth muscle cell asso 97.6 0.0018 6.2E-08 59.5 16.6 98 359-459 27-128 (148)
152 2vgx_A Chaperone SYCD; alterna 97.6 0.00028 9.4E-09 66.7 10.7 87 438-526 29-115 (148)
153 3upv_A Heat shock protein STI1 97.6 0.0011 3.8E-08 59.9 14.5 92 363-456 7-98 (126)
154 2fbn_A 70 kDa peptidylprolyl i 97.6 0.001 3.5E-08 65.6 15.4 121 362-485 40-176 (198)
155 1elr_A TPR2A-domain of HOP; HO 97.6 0.00063 2.2E-08 61.0 12.6 58 363-421 7-64 (131)
156 4b4t_Q 26S proteasome regulato 97.6 0.0023 7.9E-08 71.0 19.9 195 439-633 13-244 (434)
157 2fbn_A 70 kDa peptidylprolyl i 97.6 0.00098 3.4E-08 65.7 14.9 151 366-520 10-176 (198)
158 1elr_A TPR2A-domain of HOP; HO 97.6 0.00074 2.5E-08 60.5 12.8 114 395-511 4-123 (131)
159 2kck_A TPR repeat; tetratricop 97.6 0.00056 1.9E-08 59.5 11.6 90 401-492 12-104 (112)
160 3q49_B STIP1 homology and U bo 97.6 0.0018 6.1E-08 59.0 15.2 98 359-458 8-105 (137)
161 2vgx_A Chaperone SYCD; alterna 97.6 0.001 3.5E-08 62.7 13.8 95 362-458 23-117 (148)
162 2xcb_A PCRH, regulatory protei 97.5 0.0012 4.1E-08 61.4 13.9 96 362-459 20-115 (142)
163 3q49_B STIP1 homology and U bo 97.5 0.0018 6.1E-08 59.0 14.8 98 394-493 8-105 (137)
164 3sz7_A HSC70 cochaperone (SGT) 97.5 0.0021 7E-08 61.2 15.5 99 359-459 10-108 (164)
165 3sz7_A HSC70 cochaperone (SGT) 97.5 0.002 6.9E-08 61.3 15.5 99 394-494 10-108 (164)
166 3dss_A Geranylgeranyl transfer 97.5 0.023 7.9E-07 61.1 25.2 54 584-640 207-271 (331)
167 3ro3_A PINS homolog, G-protein 97.5 0.00067 2.3E-08 63.0 11.8 131 503-633 12-157 (164)
168 2dba_A Smooth muscle cell asso 97.5 0.0025 8.7E-08 58.5 15.6 98 394-494 27-128 (148)
169 2xcb_A PCRH, regulatory protei 97.5 0.0014 4.7E-08 61.0 13.3 95 397-493 20-114 (142)
170 2kck_A TPR repeat; tetratricop 97.5 0.00089 3E-08 58.1 11.3 99 360-460 6-107 (112)
171 3ro3_A PINS homolog, G-protein 97.5 0.00084 2.9E-08 62.4 11.9 96 432-527 51-156 (164)
172 4gcn_A Protein STI-1; structur 97.4 0.0021 7.3E-08 58.7 14.1 60 362-422 10-69 (127)
173 4gcn_A Protein STI-1; structur 97.4 0.0022 7.4E-08 58.6 13.9 101 540-643 13-119 (127)
174 3dss_A Geranylgeranyl transfer 97.4 0.052 1.8E-06 58.3 25.8 148 362-513 28-192 (331)
175 1hxi_A PEX5, peroxisome target 97.2 0.0029 9.8E-08 57.3 12.0 93 364-458 21-113 (121)
176 2xev_A YBGF; tetratricopeptide 97.2 0.0077 2.6E-07 54.0 15.0 91 541-633 8-104 (129)
177 2xev_A YBGF; tetratricopeptide 97.2 0.008 2.7E-07 53.9 15.0 92 366-459 8-105 (129)
178 1hxi_A PEX5, peroxisome target 97.2 0.0031 1.1E-07 57.1 11.8 90 401-492 23-112 (121)
179 1kt0_A FKBP51, 51 kDa FK506-bi 97.2 0.004 1.4E-07 70.5 15.2 138 360-520 268-405 (457)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.1 0.0051 1.7E-07 69.6 15.5 128 334-485 278-405 (457)
181 1wao_1 Serine/threonine protei 97.1 0.0014 4.7E-08 74.9 10.7 118 404-524 15-134 (477)
182 3rkv_A Putative peptidylprolyl 97.1 0.0058 2E-07 57.9 13.0 76 569-647 62-138 (162)
183 3k9i_A BH0479 protein; putativ 97.0 0.0013 4.4E-08 58.9 7.5 85 548-633 3-89 (117)
184 1ihg_A Cyclophilin 40; ppiase 97.0 0.0066 2.3E-07 66.7 14.7 138 360-519 223-360 (370)
185 1ihg_A Cyclophilin 40; ppiase 97.0 0.0062 2.1E-07 66.9 14.0 91 394-486 272-362 (370)
186 3k9i_A BH0479 protein; putativ 97.0 0.0015 5.2E-08 58.4 7.5 85 373-458 3-89 (117)
187 1wao_1 Serine/threonine protei 97.0 0.0019 6.6E-08 73.6 10.1 121 366-489 12-134 (477)
188 3rkv_A Putative peptidylprolyl 96.9 0.015 5.1E-07 54.9 14.0 62 431-493 64-125 (162)
189 1klx_A Cysteine rich protein B 96.7 0.016 5.6E-07 53.6 12.5 111 514-635 9-127 (138)
190 2if4_A ATFKBP42; FKBP-like, al 96.7 0.0036 1.2E-07 67.8 9.1 146 362-528 181-327 (338)
191 3n71_A Histone lysine methyltr 96.7 0.006 2.1E-07 69.6 11.2 124 370-493 319-463 (490)
192 3n71_A Histone lysine methyltr 96.7 0.012 4E-07 67.1 13.6 133 579-739 318-464 (490)
193 2if4_A ATFKBP42; FKBP-like, al 96.6 0.005 1.7E-07 66.7 9.3 146 397-564 181-328 (338)
194 2hr2_A Hypothetical protein; a 96.5 0.026 8.9E-07 53.7 12.7 95 362-458 13-130 (159)
195 1dce_A Protein (RAB geranylger 96.5 0.097 3.3E-06 60.8 20.3 172 376-552 45-243 (567)
196 2hr2_A Hypothetical protein; a 96.4 0.081 2.8E-06 50.3 15.2 62 572-633 59-130 (159)
197 1dce_A Protein (RAB geranylger 96.4 0.15 5.2E-06 59.1 20.7 135 409-547 43-190 (567)
198 1klx_A Cysteine rich protein B 96.3 0.082 2.8E-06 48.7 14.9 14 444-457 75-88 (138)
199 2l6j_A TPR repeat-containing p 96.3 0.022 7.5E-07 49.3 10.2 68 569-639 3-70 (111)
200 2l6j_A TPR repeat-containing p 96.3 0.0034 1.2E-07 54.7 4.7 60 362-422 6-65 (111)
201 1na3_A Designed protein CTPR2; 96.1 0.052 1.8E-06 44.9 11.3 58 363-421 12-69 (91)
202 2kat_A Uncharacterized protein 96.1 0.035 1.2E-06 48.9 10.6 79 553-633 3-81 (115)
203 3mkq_A Coatomer beta'-subunit; 96.1 0.23 8E-06 59.7 21.2 99 370-492 609-708 (814)
204 1na3_A Designed protein CTPR2; 96.0 0.07 2.4E-06 44.1 11.7 84 394-479 8-91 (91)
205 2kat_A Uncharacterized protein 96.0 0.037 1.3E-06 48.7 10.2 61 395-456 19-79 (115)
206 3mkq_A Coatomer beta'-subunit; 95.7 0.24 8E-06 59.6 18.7 153 404-595 608-761 (814)
207 3ma5_A Tetratricopeptide repea 95.5 0.05 1.7E-06 46.9 8.8 64 569-633 6-69 (100)
208 1zu2_A Mitochondrial import re 95.5 0.032 1.1E-06 53.0 7.9 99 549-651 16-135 (158)
209 3ma5_A Tetratricopeptide repea 95.4 0.079 2.7E-06 45.6 9.6 60 396-456 8-67 (100)
210 1zu2_A Mitochondrial import re 95.0 0.064 2.2E-06 50.9 8.3 72 334-408 12-93 (158)
211 3ly7_A Transcriptional activat 94.8 0.48 1.7E-05 51.2 15.6 76 567-646 274-349 (372)
212 3qwp_A SET and MYND domain-con 94.6 0.15 5E-06 57.0 11.4 92 542-633 294-399 (429)
213 3qww_A SET and MYND domain-con 94.4 0.081 2.8E-06 59.2 8.8 87 547-633 310-410 (433)
214 3qww_A SET and MYND domain-con 94.3 0.2 6.8E-06 56.0 11.4 94 617-738 310-410 (433)
215 3qwp_A SET and MYND domain-con 94.2 0.36 1.2E-05 53.9 13.5 99 612-738 294-399 (429)
216 3ly7_A Transcriptional activat 94.2 0.67 2.3E-05 50.1 14.9 74 462-539 274-347 (372)
217 3mkq_B Coatomer subunit alpha; 94.2 2.3 7.9E-05 40.8 17.0 131 366-526 11-141 (177)
218 3mkq_B Coatomer subunit alpha; 93.3 3 0.0001 40.0 16.0 99 476-595 16-114 (177)
219 2kc7_A BFR218_protein; tetratr 93.2 0.45 1.5E-05 40.0 9.5 26 397-422 37-62 (99)
220 2kc7_A BFR218_protein; tetratr 92.8 0.29 9.9E-06 41.2 7.6 58 402-460 7-65 (99)
221 1pc2_A Mitochondria fission pr 91.9 1.3 4.3E-05 41.6 11.2 86 551-640 14-104 (152)
222 1wy6_A Hypothetical protein ST 91.3 7.1 0.00024 35.6 14.7 29 537-565 127-155 (172)
223 2v5f_A Prolyl 4-hydroxylase su 90.6 1.8 6.3E-05 37.2 10.5 69 570-640 5-79 (104)
224 1wy6_A Hypothetical protein ST 90.3 8.4 0.00029 35.1 14.2 137 373-531 20-156 (172)
225 3bee_A Putative YFRE protein; 90.2 1.5 5.1E-05 37.2 9.3 65 569-634 5-72 (93)
226 3bee_A Putative YFRE protein; 88.2 3 0.0001 35.3 9.7 19 403-421 51-69 (93)
227 3u64_A Protein TP_0956; tetrat 87.8 4.9 0.00017 41.8 12.6 93 376-470 179-282 (301)
228 2v5f_A Prolyl 4-hydroxylase su 87.5 5.1 0.00018 34.3 11.1 66 359-424 4-75 (104)
229 1pc2_A Mitochondria fission pr 86.2 4.9 0.00017 37.6 10.5 80 378-459 16-100 (152)
230 3u64_A Protein TP_0956; tetrat 83.6 9.4 0.00032 39.7 12.3 123 395-527 154-296 (301)
231 4h7y_A Dual specificity protei 81.7 15 0.00052 34.1 11.5 54 479-533 74-127 (161)
232 4b4t_P 26S proteasome regulato 81.4 44 0.0015 36.9 18.0 95 539-633 141-246 (445)
233 1nzn_A CGI-135 protein, fissio 80.7 6.1 0.00021 35.6 8.4 86 550-639 16-106 (126)
234 4b4t_P 26S proteasome regulato 78.0 88 0.003 34.5 22.7 51 338-388 30-84 (445)
235 4h7y_A Dual specificity protei 77.6 17 0.00057 33.8 10.4 65 583-649 73-137 (161)
236 4gns_B Protein CSD3, chitin bi 77.6 9.1 0.00031 45.4 11.0 29 466-494 249-278 (754)
237 2wpv_A GET4, UPF0363 protein Y 77.6 73 0.0025 33.3 18.4 166 398-597 36-215 (312)
238 2ff4_A Probable regulatory pro 76.5 15 0.00052 39.9 11.9 71 398-469 174-249 (388)
239 4gns_B Protein CSD3, chitin bi 76.0 13 0.00044 44.1 11.7 126 363-491 251-397 (754)
240 1nzn_A CGI-135 protein, fissio 75.4 9.1 0.00031 34.4 7.9 20 474-493 83-102 (126)
241 2ff4_A Probable regulatory pro 75.2 11 0.00037 41.1 10.2 73 432-505 173-250 (388)
242 3fau_A NEDD4-binding protein 2 73.8 3.8 0.00013 33.9 4.7 72 755-835 2-78 (82)
243 4fhn_B Nucleoporin NUP120; pro 71.3 27 0.00094 43.7 13.9 149 400-556 817-992 (1139)
244 4ady_A RPN2, 26S proteasome re 71.3 1.9E+02 0.0064 35.1 23.9 20 579-598 569-588 (963)
245 1v54_E Cytochrome C oxidase po 70.1 24 0.00082 30.3 8.7 45 553-597 28-72 (109)
246 4fhn_B Nucleoporin NUP120; pro 67.6 52 0.0018 41.2 15.3 143 506-656 818-987 (1139)
247 3lpz_A GET4 (YOR164C homolog); 64.2 1.5E+02 0.0051 31.3 23.0 166 398-597 38-214 (336)
248 2y69_E Cytochrome C oxidase su 62.5 35 0.0012 30.9 8.7 44 554-597 72-115 (152)
249 1v54_E Cytochrome C oxidase po 61.8 42 0.0014 28.9 8.6 44 414-457 29-72 (109)
250 3txn_A 26S proteasome regulato 60.9 1.9E+02 0.0063 31.3 23.1 164 362-526 21-207 (394)
251 2p58_C Putative type III secre 58.0 38 0.0013 29.0 7.6 87 337-433 20-106 (116)
252 2wpv_A GET4, UPF0363 protein Y 57.7 1.8E+02 0.0063 30.2 18.4 111 468-593 36-157 (312)
253 1qsa_A Protein (soluble lytic 55.7 2.8E+02 0.0097 31.8 26.9 253 362-633 74-347 (618)
254 2uwj_G Type III export protein 55.6 37 0.0013 29.1 7.1 87 337-433 19-105 (115)
255 3o48_A Mitochondria fission 1 55.5 81 0.0028 28.5 10.0 72 567-640 37-111 (134)
256 1wdy_A 2-5A-dependent ribonucl 54.9 23 0.00078 35.5 7.4 19 365-383 7-25 (285)
257 2p58_C Putative type III secre 54.1 49 0.0017 28.3 7.6 78 445-530 22-99 (116)
258 1k1a_A B-cell lymphoma 3-encod 53.6 32 0.0011 33.5 8.1 15 407-421 18-32 (241)
259 3eiq_C Programmed cell death p 53.3 88 0.003 33.4 11.7 24 363-386 57-80 (358)
260 2d9i_A NEDD4-binding protein 2 52.8 30 0.001 29.2 6.6 73 754-835 9-86 (96)
261 2y69_E Cytochrome C oxidase su 51.9 66 0.0022 29.2 8.6 43 416-458 74-116 (152)
262 4b4t_R RPN7, 26S proteasome re 51.7 67 0.0023 35.2 11.0 61 467-527 133-195 (429)
263 4b4t_R RPN7, 26S proteasome re 50.9 86 0.0029 34.3 11.7 95 539-633 135-236 (429)
264 3eiq_C Programmed cell death p 49.6 1.4E+02 0.0049 31.7 12.6 79 573-652 220-300 (358)
265 2uwj_G Type III export protein 49.5 48 0.0016 28.4 6.8 78 445-530 21-98 (115)
266 2qx5_A Nucleoporin NIC96; mRNA 47.6 2E+02 0.007 33.3 14.5 42 365-407 157-198 (661)
267 3o48_A Mitochondria fission 1 47.5 1E+02 0.0035 27.8 9.3 23 471-493 84-106 (134)
268 2vkc_A NEDD4-binding protein 2 47.4 50 0.0017 29.9 7.5 73 754-835 54-131 (135)
269 1y8m_A FIS1; mitochondria, unk 47.2 1.7E+02 0.0058 26.7 11.4 66 428-493 37-105 (144)
270 3ltm_A Alpha-REP4; protein eng 47.0 1.9E+02 0.0065 27.3 16.5 152 359-527 32-183 (211)
271 3ffl_A Anaphase-promoting comp 44.7 1.2E+02 0.0042 28.4 9.8 58 506-563 26-91 (167)
272 3lvg_A Clathrin heavy chain 1; 41.7 0.016 5.6E-07 64.1 -19.6 221 362-618 56-276 (624)
273 1wdy_A 2-5A-dependent ribonucl 38.6 20 0.00069 35.9 3.8 19 400-418 7-25 (285)
274 3eu9_A Huntingtin-interacting 38.4 27 0.00091 33.9 4.6 14 370-383 16-29 (240)
275 4ady_A RPN2, 26S proteasome re 38.4 6.1E+02 0.021 30.7 29.1 219 440-670 384-624 (963)
276 1k1a_A B-cell lymphoma 3-encod 37.1 34 0.0012 33.2 5.2 87 365-455 11-101 (241)
277 3lpz_A GET4 (YOR164C homolog); 36.4 4E+02 0.014 28.0 20.8 25 569-593 135-159 (336)
278 3ffl_A Anaphase-promoting comp 36.1 1.6E+02 0.0054 27.7 9.0 127 459-598 12-150 (167)
279 2zu6_B Programmed cell death p 36.0 2.7E+02 0.0093 28.8 12.0 25 363-387 6-30 (307)
280 3eu9_A Huntingtin-interacting 34.9 27 0.00094 33.8 4.0 45 404-452 15-61 (240)
281 3txn_A 26S proteasome regulato 34.3 4.6E+02 0.016 28.1 23.2 93 505-597 104-208 (394)
282 3ltm_A Alpha-REP4; protein eng 32.2 3.2E+02 0.011 25.6 17.0 109 533-653 93-201 (211)
283 1y8m_A FIS1; mitochondria, unk 31.0 3.1E+02 0.01 25.0 13.2 72 567-640 36-110 (144)
284 1zbp_A Hypothetical protein VP 29.6 1.2E+02 0.0041 30.9 7.6 48 443-491 10-57 (273)
285 3esl_A Checkpoint serine/threo 29.2 3.3E+02 0.011 26.3 10.3 53 481-533 95-148 (202)
286 2zu6_B Programmed cell death p 28.6 2.1E+02 0.0072 29.7 9.6 73 573-646 169-243 (307)
287 3jxi_A Vanilloid receptor-rela 28.6 18 0.00061 36.1 1.3 56 366-421 8-72 (260)
288 2d2s_A Exocyst complex compone 28.4 3.8E+02 0.013 26.4 11.2 28 499-526 90-117 (235)
289 1zbp_A Hypothetical protein VP 27.9 4.9E+02 0.017 26.4 13.1 55 404-459 6-60 (273)
290 3t8k_A Uncharacterized protein 27.0 2.2E+02 0.0074 26.7 8.8 65 470-534 40-108 (186)
291 4fke_A Aminopeptidase N; zinc 26.2 9.1E+02 0.031 28.9 16.6 90 399-493 690-786 (909)
292 3esl_A Checkpoint serine/threo 25.6 4.6E+02 0.016 25.3 12.7 58 583-640 92-150 (202)
293 1t2y_A Metallothionein, MT; pr 25.2 35 0.0012 21.3 1.6 19 24-42 3-21 (26)
294 3jxi_A Vanilloid receptor-rela 24.9 39 0.0013 33.5 3.1 27 403-429 10-36 (260)
295 3hra_A Ankyrin repeat family p 24.6 77 0.0026 29.6 5.1 12 556-567 159-170 (201)
296 3ltj_A Alpharep-4; protein eng 23.8 4.3E+02 0.015 24.3 18.1 107 533-651 88-194 (201)
297 2nsz_A Programmed cell death p 23.6 3.8E+02 0.013 23.6 9.6 23 539-561 11-33 (129)
298 1bpo_A Protein (clathrin); cla 23.3 7.8E+02 0.027 27.1 13.4 116 332-453 337-452 (494)
299 3hra_A Ankyrin repeat family p 23.1 35 0.0012 32.1 2.3 62 472-534 110-172 (201)
300 4g8k_A 2-5A-dependent ribonucl 23.0 2.6E+02 0.009 28.5 9.4 20 364-383 26-45 (337)
301 1qsa_A Protein (soluble lytic 23.0 8.8E+02 0.03 27.6 22.8 283 375-676 54-354 (618)
302 3l6a_A Eukaryotic translation 22.5 4.7E+02 0.016 27.7 11.2 25 363-387 15-39 (364)
303 3t8k_A Uncharacterized protein 21.7 1.9E+02 0.0066 27.0 7.3 19 481-499 90-108 (186)
304 2nsz_A Programmed cell death p 21.6 4.2E+02 0.014 23.3 9.3 62 399-461 11-74 (129)
305 3ltj_A Alpharep-4; protein eng 20.6 5E+02 0.017 23.9 17.9 80 428-515 88-167 (201)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.1e-29 Score=297.70 Aligned_cols=440 Identities=8% Similarity=-0.037 Sum_probs=349.3
Q ss_pred CHHHHHHHHHh---hhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 326 DAYQANQVLKQ---LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLI 402 (856)
Q Consensus 326 ~~~~~~~vL~~---l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li 402 (856)
+...++.+++. .++++.|+.+|+.+.. ..|+..++..++.+|.+.|++++|..+|+.+... +++..+|+.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 34455555554 4789999999999974 3478889999999999999999999999988653 67999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHH-Hc--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003028 403 HSYGRANYLNEALDVFKQMQ-VV--------------GCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFT 467 (856)
Q Consensus 403 ~~~~~~g~~~~A~~lf~~m~-~~--------------g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t 467 (856)
.+|.+.|++++|+++|+++. .. +.+.+..+|+.++.+|.+.|++++|.++|++|.+.+. .+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHH
Confidence 99999999999999999532 21 2344689999999999999999999999999988642 23333
Q ss_pred HH--------------------------------------HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 468 YS--------------------------------------VIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIAL 509 (856)
Q Consensus 468 y~--------------------------------------~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~ 509 (856)
+. .++.+|.+.|++++|.++|+++.+. +++..+|+.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 33 3356677899999999999999875 4799999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 003028 510 QAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKA 589 (856)
Q Consensus 510 ~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A 589 (856)
|.+.|++++|+++|++|.+.+. .+..++..++.++...|++++|..+++++.+.. ..+..+++.++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999987653 367789999999999999999999999998654 45788999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003028 590 WEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 590 ~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~ 669 (856)
.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|++|.+.+ ..+..+|..+..+|.+.|++++|..+++.+.+.
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998753 4568899999999999999999999999999853 347789999999999999999999999999887
Q ss_pred CCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC----CCCch--HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 003028 670 GHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSE----DRESK--RGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYP 743 (856)
Q Consensus 670 g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~--~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~~P 743 (856)
.+.....+..+...+...+ ..+.+..+++.+... +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ |
T Consensus 471 ~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p 547 (597)
T 2xpi_A 471 FQYDPLLLNELGVVAFNKS-DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--T 547 (597)
T ss_dssp CCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--S
T ss_pred CCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C
Confidence 7654443333322222223 345555555554433 44555 6789999999999999999999999998875 4
Q ss_pred CcccccCceeeeeccccccchhhHHHHHHHHHHHHHHHHHcCCCCCce
Q 003028 744 DAVKEKGMSYWLINLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRI 791 (856)
Q Consensus 744 d~~t~~~~~~w~~~~~~l~~g~a~~g~~~~l~~~~~~m~~~g~~Pd~i 791 (856)
+.. ..|. .+...+...|..+.+..+++++++. .|+..
T Consensus 548 ~~~-----~~~~----~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 584 (597)
T 2xpi_A 548 NDA-----NVHT----AIALVYLHKKIPGLAITHLHESLAI--SPNEI 584 (597)
T ss_dssp CCH-----HHHH----HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCh-----HHHH----HHHHHHHHhCCHHHHHHHHHHHHhc--CCCCh
Confidence 322 2232 2455556666555555555777665 36653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.7e-29 Score=295.64 Aligned_cols=440 Identities=9% Similarity=-0.028 Sum_probs=346.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 358 HDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 358 pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
++...|+.++..|.+.|++++|..+|++|... .|+..+|..++.+|.+.|++++|..+|+++... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 57889999999999999999999999999864 588899999999999999999999999998643 78999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAA---------------GLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVT 502 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~---------------g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~t 502 (856)
.+|.+.|++++|.++|+++... +.+.+..+|+.++.+|.+.|++++|.++|++|.+.+.. +...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHH
Confidence 9999999999999999953221 22346899999999999999999999999999876432 3333
Q ss_pred HHH--------------------------------------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 503 YNI--------------------------------------MIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEV 544 (856)
Q Consensus 503 y~~--------------------------------------Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a 544 (856)
+.. ++..|.+.|++++|.++|++|.+. .++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 333 355667889999999999998765 5789999999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 545 LGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDA 624 (856)
Q Consensus 545 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A 624 (856)
|.+.|++++|..+|+++.+.+. .+..+++.++.+|.+.|++++|..+|+++.+. .+.+..+|+.++..|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999998663 47889999999999999999999999999865 356799999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC
Q 003028 625 YHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSE 704 (856)
Q Consensus 625 ~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~ 704 (856)
.++|+++.+.. ..+..+|..+..++.+.|++++|..+++.+.+.++.....+..+...+...+ ..+.+..+++.+...
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG-NILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 99999999732 3357899999999999999999999999999887754333333222222222 345566666655544
Q ss_pred CCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCCCcccccCceeeeeccccccchhhHHHHHHHHHHHHHH
Q 003028 705 DRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQK----NVYPDAVKEKGMSYWLINLHVMSDGTAVIALSRTLAWFRKQ 780 (856)
Q Consensus 705 ~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~----~~~Pd~~t~~~~~~w~~~~~~l~~g~a~~g~~~~l~~~~~~ 780 (856)
.+. +..+|+.++.+|.+.|++++|.++|++|.+. +..|+.. ...|. .+...+...|..+.+..++++
T Consensus 471 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~----~~~~~----~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 471 FQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW----AATWA----NLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG----HHHHH----HHHHHHHHTTCHHHHHHHHHH
T ss_pred CCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH----HHHHH----HHHHHHHHhcCHHHHHHHHHH
Confidence 333 5678999999999999999999999999876 5555421 11232 355556666665555555578
Q ss_pred HHHcCCCCCceeeeeeccccCCcccchHHHHHHHHHHhhcC
Q 003028 781 MLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHMFS 821 (856)
Q Consensus 781 m~~~g~~Pd~it~i~~l~~~~~~~~~~~l~~a~~~ll~~~~ 821 (856)
+.+.+ |+.......++..- ...|..++|.+.+...+.
T Consensus 542 ~~~~~--p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 542 GLLLS--TNDANVHTAIALVY--LHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHS--SCCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHH
T ss_pred HHHhC--CCChHHHHHHHHHH--HHhCCHHHHHHHHHHHHh
Confidence 87765 76543322222221 123448888888777654
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.4e-28 Score=282.79 Aligned_cols=203 Identities=19% Similarity=0.275 Sum_probs=175.2
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HHHH
Q 003028 345 GFFNWLRRQAGFKHD-EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANY---------LNEA 414 (856)
Q Consensus 345 ~~f~~m~~~~g~~pd-~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~---------~~~A 414 (856)
.++..+.+ .+.... ...++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++|
T Consensus 11 ~L~~~~~~-k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 11 NLSRKAKK-KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHH-hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 34444443 344443 346888999999999999999999999999999999999999999987654 6889
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 415 ~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003028 495 GCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHC 548 (856)
Q Consensus 495 g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~ 548 (856)
|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999988764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.6e-28 Score=281.32 Aligned_cols=207 Identities=13% Similarity=0.189 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------H
Q 003028 377 GAINKLLDQMVRDGCQPNV-VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF---------L 446 (856)
Q Consensus 377 ~~A~~lf~~m~~~g~~pd~-~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~---------~ 446 (856)
..++.+...+.+++....+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3456666777776665543 45788899999999999999999999999999999999999999887654 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 447 DVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDM 526 (856)
Q Consensus 447 ~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 526 (856)
++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 003028 527 QNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKA 583 (856)
Q Consensus 527 ~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~ 583 (856)
.+.|+.||..||++||.+|++.|+.++|.++|++|++.+..|+..||+.++..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888888888888888888888764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=2.1e-20 Score=208.57 Aligned_cols=360 Identities=15% Similarity=0.077 Sum_probs=305.0
Q ss_pred HHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003028 334 LKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNE 413 (856)
Q Consensus 334 L~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 413 (856)
.-..++++.|+..+..+.+.. +.+...+..+...+...|++++|..+++...+.. +.+...|..+...|.+.|++++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 345689999999998887643 2356677888889999999999999999988753 5688899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003028 414 ALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 414 A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~ 493 (856)
|++.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...|...|++++|.++|+++.+
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999998764 4456789999999999999999999999998864 33566777888999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 003028 494 QGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVY 573 (856)
Q Consensus 494 ~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y 573 (856)
... -+..+|..+...|...|++++|+..|+++.... +.+...|..+...+...|++++|...+.+..+.. +.+..++
T Consensus 164 ~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 164 TQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 632 267899999999999999999999999998864 2346788889999999999999999999998764 2367889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003028 574 GLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEA 653 (856)
Q Consensus 574 ~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~ 653 (856)
..+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|++.|+++++. ...+..++..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHc
Confidence 999999999999999999999999853 346789999999999999999999999999984 345678899999999999
Q ss_pred CCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHH
Q 003028 654 RSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVW 733 (856)
Q Consensus 654 g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf 733 (856)
|++++|..+++.+.+.. +.+..++..++..|.+.|++++|.+.|
T Consensus 319 g~~~~A~~~~~~al~~~------------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVF------------------------------------PEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp TCHHHHHHHHHHHTTSC------------------------------------TTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC------------------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99887777665554321 123556889999999999999999999
Q ss_pred HHHHhC
Q 003028 734 EVAAQK 739 (856)
Q Consensus 734 ~~m~~~ 739 (856)
+++.+.
T Consensus 363 ~~a~~~ 368 (388)
T 1w3b_A 363 KEAIRI 368 (388)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 999875
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.89 E-value=2.2e-19 Score=200.31 Aligned_cols=330 Identities=14% Similarity=0.076 Sum_probs=283.5
Q ss_pred HHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003028 332 QVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYL 411 (856)
Q Consensus 332 ~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~ 411 (856)
.+....++++.|..+++...+. .+.+..+|..+..+|.+.|++++|...|+++.+.. +.+...|..+..+|.+.|++
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 117 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDM 117 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCH
Confidence 3344568999999999988764 34578899999999999999999999999998753 33567899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003028 412 NEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEM 491 (856)
Q Consensus 412 ~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m 491 (856)
++|.+.|+++.+.. +.+...+..+...+...|++++|.++|+++.+.. +-+..+|..+...|.+.|++++|...|+++
T Consensus 118 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 195 (388)
T 1w3b_A 118 EGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp SHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998864 3345667788888999999999999999998863 346889999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 003028 492 VNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEP 571 (856)
Q Consensus 492 ~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~ 571 (856)
.+... .+...|..+...+...|++++|+..|++..... +-+..++..+...+...|++++|...|+.+.+.. +.+..
T Consensus 196 l~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 272 (388)
T 1w3b_A 196 VTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPD 272 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHH
T ss_pred HhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH
Confidence 98643 267789999999999999999999999988753 2247788999999999999999999999999864 33677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 572 VYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCT 651 (856)
Q Consensus 572 ~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~ 651 (856)
+|..+...|.+.|++++|...|+++.+. .+.+..+|+.+...|.+.|++++|+.+|+++++. ...+..++..+...+.
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~ 350 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHH
Confidence 8999999999999999999999999976 3668899999999999999999999999999873 2334678899999999
Q ss_pred hcCCcchHHHHHHHHHHcCC
Q 003028 652 EARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 652 ~~g~~~~a~~l~~~m~~~g~ 671 (856)
..|++++|...++.+.+..+
T Consensus 351 ~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 351 QQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp TTTCCHHHHHHHHHHHTTCT
T ss_pred HcCCHHHHHHHHHHHHhhCC
Confidence 99999999888877765433
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.84 E-value=1.1e-17 Score=189.64 Aligned_cols=293 Identities=15% Similarity=0.072 Sum_probs=226.1
Q ss_pred hhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003028 336 QLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415 (856)
Q Consensus 336 ~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 415 (856)
..++++.|+.+|+.+... .+.+..+|..+..++...|++++|...|+.+.+.+ +.+...|..+..+|.+.|++++|.
T Consensus 38 ~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 114 (450)
T 2y4t_A 38 AAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAE 114 (450)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 447888888888888754 23467788888888888889999998888888763 346778888888888888999999
Q ss_pred HHHHHHHHcCCCCCH---HHHHHHHHH------------HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 003028 416 DVFKQMQVVGCEPDR---VTYCTLIDI------------HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH 480 (856)
Q Consensus 416 ~lf~~m~~~g~~pd~---~ty~~Ll~~------------~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~ 480 (856)
+.|+++.+.. +.+. ..+..+... +.+.|++++|..+|+++.+.. +.+..++..+..+|.+.|+
T Consensus 115 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 192 (450)
T 2y4t_A 115 DDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGE 192 (450)
T ss_dssp HHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCC
Confidence 8888887653 2333 566666444 778888888888888888763 4477888888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH------------HHHHHh
Q 003028 481 LQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD-KVTYSIV------------MEVLGH 547 (856)
Q Consensus 481 ~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-~~ty~~l------------l~a~~~ 547 (856)
+++|.++|+++.+.. +.+..+|..+...|...|++++|+..|+++.... |+ ...+..+ ...|..
T Consensus 193 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (450)
T 2y4t_A 193 PRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIR 269 (450)
T ss_dssp GGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887653 2367888888888888888888888888887653 33 3344433 677888
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003028 548 CGYLDEAEAVFAEMRRKNWVPD-----EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLS 622 (856)
Q Consensus 548 ~g~~~~A~~l~~~m~~~g~~pd-----~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e 622 (856)
.|++++|..+|+.+.+.. |+ ..+|..+..++.+.|++++|...++++.+.. +.+...|..+..+|...|+++
T Consensus 270 ~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~ 346 (450)
T 2y4t_A 270 DGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYD 346 (450)
T ss_dssp HTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHH
Confidence 888888888888888753 33 3467788888888888888888888887642 346788888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 003028 623 DAYHLLQGMLNLGLKPSLQ 641 (856)
Q Consensus 623 ~A~~l~~~M~~~g~~Pd~~ 641 (856)
+|...|+++++ +.|+..
T Consensus 347 ~A~~~~~~al~--~~p~~~ 363 (450)
T 2y4t_A 347 EAIQDYETAQE--HNENDQ 363 (450)
T ss_dssp HHHHHHHHHHT--TSSSCH
T ss_pred HHHHHHHHHHH--hCcchH
Confidence 88888888886 456543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1e-17 Score=192.88 Aligned_cols=394 Identities=9% Similarity=-0.015 Sum_probs=254.7
Q ss_pred HhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003028 335 KQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEA 414 (856)
Q Consensus 335 ~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A 414 (856)
-..++++.|+..|+.+.... |+...|..+..++.+.|++++|...|+.+.+.. +.+...|..+..+|.+.|++++|
T Consensus 17 ~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 17 FRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHH
Confidence 34578999999999998643 788899999999999999999999999998764 34678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------------------------------
Q 003028 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGL--------------------------------- 461 (856)
Q Consensus 415 ~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~--------------------------------- 461 (856)
...|+++...+ +++......++..+........+.+.+..+...+.
T Consensus 93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 93 MFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 99999998765 34444444444444433322222222211111000
Q ss_pred -----------CCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHHHcC
Q 003028 462 -----------SPDTFTYSVIINCLGK---AGHLQAAHQLFCEMVN-----QGC--------IPNLVTYNIMIALQAKAR 514 (856)
Q Consensus 462 -----------~pd~~ty~~Li~~y~k---~g~~~~A~~lf~~m~~-----~g~--------~pd~~ty~~Li~~~~~~g 514 (856)
+.+...+..+...+.. .|++++|..+|+++.+ ... +.+..+|..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 0113333333333333 6777777777777766 211 113456666777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 003028 515 NYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYE 594 (856)
Q Consensus 515 ~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~ 594 (856)
++++|+.+|+++.+.... ...+..+...+...|++++|...++.+.+.. ..+..++..+...|...|++++|...|+
T Consensus 252 ~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp CHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 777777777777665433 6666677777777777777777777776643 2355667777777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChH
Q 003028 595 AMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAH 674 (856)
Q Consensus 595 ~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~ 674 (856)
+..+.. +.+...|..+...|...|++++|+.+|+++.+.. ..+..++..+...+...|++++|...++.+....+...
T Consensus 329 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 329 KAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 777642 3356677777777777777777777777777632 22345666666677777777777777766655432211
Q ss_pred H------HHHhcCCCCCC---cccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 675 M------FLLSMPSPGPD---GQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 675 ~------~~~~l~~~~~~---~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
. .+..+...+.. . +..+.+...++......+. +..++..+..+|.+.|++++|.+.|+++.+..
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTV-ENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 0 11111111111 1 2334444444443333222 45567899999999999999999999998864
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.82 E-value=4.1e-17 Score=185.03 Aligned_cols=313 Identities=13% Similarity=0.097 Sum_probs=202.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
+...|..+...+.+.|++++|..+|+.+.+.. +.+...|..+..+|...|++++|+..|+++.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 45667777777778888888888887777642 3467777777777777788888888887777654 445667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSPD-T---FTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKAR 514 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~pd-~---~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g 514 (856)
+|.+.|++++|.+.|+++.+.. |+ . ..+..++..+.. ..+..+...+...|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 7777777777777777776642 33 3 445544433111 11222334455666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 003028 515 NYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYE 594 (856)
Q Consensus 515 ~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~ 594 (856)
++++|+.+|+++.+.. +.+...+..+..+|...|++++|..+|+.+.+.. +.+..++..+..+|...|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666766666666542 2345566666666667777777777776666543 2355666677777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCcc
Q 003028 595 AMLQAGLRPNVPTCNSL------------LSAFLRVGQLSDAYHLLQGMLNLGLKPS-----LQTYTLLLSCCTEARSPY 657 (856)
Q Consensus 595 ~m~~~g~~pd~~t~n~L------------i~ay~~~g~~e~A~~l~~~M~~~g~~Pd-----~~ty~~Ll~a~~~~g~~~ 657 (856)
++.... +.+...+..+ ...|.+.|++++|+.+|+++++ +.|+ ...|..+...+.+.|+++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 766532 2233444443 6777778888888888888776 3444 345666666777777776
Q ss_pred hHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 003028 658 DMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAA 737 (856)
Q Consensus 658 ~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~ 737 (856)
+|...++.+.+.. +.+..+|..++.+|.+.|++++|.+.|+++.
T Consensus 313 ~A~~~~~~a~~~~------------------------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 356 (450)
T 2y4t_A 313 EAIRVCSEVLQME------------------------------------PDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356 (450)
T ss_dssp HHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC------------------------------------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6666555443321 1134556778888888888888888888887
Q ss_pred hC
Q 003028 738 QK 739 (856)
Q Consensus 738 ~~ 739 (856)
+.
T Consensus 357 ~~ 358 (450)
T 2y4t_A 357 EH 358 (450)
T ss_dssp TT
T ss_pred Hh
Confidence 64
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.2e-16 Score=183.87 Aligned_cols=342 Identities=13% Similarity=0.006 Sum_probs=254.3
Q ss_pred CCHHHHHHHH---HhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------
Q 003028 325 MDAYQANQVL---KQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN------- 394 (856)
Q Consensus 325 ~~~~~~~~vL---~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd------- 394 (856)
|+...+..+- ...++++.|+..|+.+.+.. +.+..+|..+..+|.+.|++++|...|+.+.+.+. ++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 113 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPM 113 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHH
Confidence 5655554433 34589999999999998643 34577899999999999999999999999987541 11
Q ss_pred ------------------------------------------------------------------------HHHHHHHH
Q 003028 395 ------------------------------------------------------------------------VVTYNRLI 402 (856)
Q Consensus 395 ------------------------------------------------------------------------~~ty~~Li 402 (856)
...+..+.
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (514)
T 2gw1_A 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG 193 (514)
T ss_dssp HHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHH
Confidence 22233333
Q ss_pred HHHHh---cCCHHHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003028 403 HSYGR---ANYLNEALDVFKQMQV-----VGC--------EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTF 466 (856)
Q Consensus 403 ~~~~~---~g~~~~A~~lf~~m~~-----~g~--------~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ 466 (856)
..+.. .|++++|+.+|+++.+ ..- +.+..++..+...+...|++++|..+|+++.+.. |+..
T Consensus 194 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~ 271 (514)
T 2gw1_A 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVN 271 (514)
T ss_dssp HHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHH
Confidence 33333 7888888888888876 311 2235677778888888888888888888888764 3377
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 467 TYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLG 546 (856)
Q Consensus 467 ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~ 546 (856)
++..+...|...|++++|...|+.+.+... .+...|..+...|...|++++|+..|+++..... .+...+..+...+.
T Consensus 272 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 272 SYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHH
Confidence 788888888888888888888888876532 3567788888888888888888888888877542 24557777888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHH---c
Q 003028 547 HCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGL-RPN----VPTCNSLLSAFLR---V 618 (856)
Q Consensus 547 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~-~pd----~~t~n~Li~ay~~---~ 618 (856)
..|++++|..+++.+.+.. +.+..++..+...|.+.|++++|...|+++.+..- .++ ...|..+...|.. .
T Consensus 350 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 8888888888888887753 23567788888888888888888888888775321 111 3478888888888 8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHH
Q 003028 619 GQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHM 675 (856)
Q Consensus 619 g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~ 675 (856)
|++++|...|+++++.. ..+..++..+...+...|++++|...++...+..+....
T Consensus 429 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp THHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 88888888888888742 234567777777888888888888888777776664433
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.76 E-value=3.1e-15 Score=173.41 Aligned_cols=390 Identities=10% Similarity=0.039 Sum_probs=281.8
Q ss_pred hhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003028 336 QLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415 (856)
Q Consensus 336 ~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 415 (856)
..++++.|+..|+.+.+.. +.+...|..+..+|.+.|++++|.+.|+++.+.. +.+...|..+..+|...|++++|+
T Consensus 37 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 4478899999999988643 2467889999999999999999999999998764 347888999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCCHH-----------------------
Q 003028 416 DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA------GLSPDTF----------------------- 466 (856)
Q Consensus 416 ~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~------g~~pd~~----------------------- 466 (856)
+.|+.+. ..|+. ....+..+...+....|...++++... ...|+..
T Consensus 114 ~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 114 FDLSVLS---LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHHh---cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 9996432 22332 223344555566667888888887542 1122222
Q ss_pred -------HHHHHHHHHHc--------cCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003028 467 -------TYSVIINCLGK--------AGHLQAAHQLFCEMVNQGCIPN-------LVTYNIMIALQAKARNYQSALKLYR 524 (856)
Q Consensus 467 -------ty~~Li~~y~k--------~g~~~~A~~lf~~m~~~g~~pd-------~~ty~~Li~~~~~~g~~~~A~~ll~ 524 (856)
....+...+.. .|++++|..+|+.+.+.... + ..+|..+...+...|++++|+..|+
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 22222222222 24789999999999875322 2 2356677788889999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003028 525 DMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN 604 (856)
Q Consensus 525 ~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd 604 (856)
++.+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+.. +.+
T Consensus 268 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 343 (537)
T 3fp2_A 268 ESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PEN 343 (537)
T ss_dssp HHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCC
Confidence 998864 557788888999999999999999999998865 3467889999999999999999999999998753 345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHH---------
Q 003028 605 VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHM--------- 675 (856)
Q Consensus 605 ~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~--------- 675 (856)
...|..+...|...|++++|+.+|+++.+.. ..+...+..+...+...|++++|...++...+..+....
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 7889999999999999999999999999842 334567888888899999999999999887665421100
Q ss_pred ----HHHhc---CCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 003028 676 ----FLLSM---PSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNV 741 (856)
Q Consensus 676 ----~~~~l---~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~ 741 (856)
.+... ....... +..+.+...++......+. +..++..+...|.+.|++++|.+.|+++.+...
T Consensus 423 ~~a~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDE-EKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHTC----CCH-HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhccchhhhH-hHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 00000 0000000 3445555555554443332 456788999999999999999999999988653
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.74 E-value=1.6e-14 Score=157.32 Aligned_cols=288 Identities=14% Similarity=0.038 Sum_probs=139.0
Q ss_pred hhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
.++++.|+..|+.+.... +.+...|..+..++...|++++|...|+.+.+.. +.+...|..+...|...|++++|..
T Consensus 16 ~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHH
Confidence 355555555555554422 1234455555555555555555555555555431 2244555555555555555555555
Q ss_pred HHHHHHHcCCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 003028 417 VFKQMQVVGCE---PDRVTYCTL------------IDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHL 481 (856)
Q Consensus 417 lf~~m~~~g~~---pd~~ty~~L------------l~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~ 481 (856)
.|+++.+.. + .+...+..+ ...+...|++++|.++++++.+.. +.+..++..+...|...|++
T Consensus 93 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3ieg_A 93 DFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEP 170 (359)
T ss_dssp HHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCH
Confidence 555555432 1 122333322 244555555555555555555442 23445555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHhcC
Q 003028 482 QAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYS------------IVMEVLGHCG 549 (856)
Q Consensus 482 ~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~------------~ll~a~~~~g 549 (856)
++|...|+...+.. +.+..+|..+...|...|++++|...|++..+... .+...+. .+...+...|
T Consensus 171 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (359)
T 3ieg_A 171 RKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDG 248 (359)
T ss_dssp HHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55555555555432 12444555555555555555555555555544321 1111111 1133344555
Q ss_pred ChHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 550 YLDEAEAVFAEMRRKNWVPDE----PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAY 625 (856)
Q Consensus 550 ~~~~A~~l~~~m~~~g~~pd~----~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~ 625 (856)
++++|...++.+.+.... +. ..+..+...|.+.|++++|...|++..+.. +.+..+|..+...|...|++++|.
T Consensus 249 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~ 326 (359)
T 3ieg_A 249 RYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAI 326 (359)
T ss_dssp CHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555443211 11 112334444555555555555555554431 224445555555555555555555
Q ss_pred HHHHHHHH
Q 003028 626 HLLQGMLN 633 (856)
Q Consensus 626 ~l~~~M~~ 633 (856)
+.|+++++
T Consensus 327 ~~~~~a~~ 334 (359)
T 3ieg_A 327 QDYEAAQE 334 (359)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 55555554
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.73 E-value=5.5e-14 Score=152.96 Aligned_cols=309 Identities=11% Similarity=0.033 Sum_probs=257.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
++..+..+...+...|++++|...|+.+.+.. +.+...|..+..+|...|++++|+..|+++.+.. +.+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 35578888999999999999999999998763 3468899999999999999999999999998864 447788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLS--PDTFTYSVI------------INCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYN 504 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~--pd~~ty~~L------------i~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~ 504 (856)
.+...|++++|...|+++.+.... .+...+..+ ...+...|++++|.++|+.+.+... .+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHH
Confidence 999999999999999999876320 244455444 5789999999999999999987643 3778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHH----------
Q 003028 505 IMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYG---------- 574 (856)
Q Consensus 505 ~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~---------- 574 (856)
.+...|...|++++|+..++++.... +.+..++..+...+...|++++|...++...+... .+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHH
Confidence 99999999999999999999998763 34677889999999999999999999999987642 2333333
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 003028 575 --LLVDLWGKAGNVRKAWEWYEAMLQAGLRPNV----PTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKP-SLQTYTLLL 647 (856)
Q Consensus 575 --~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~----~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~P-d~~ty~~Ll 647 (856)
.+...+.+.|++++|...|+++.+.. +.+. ..|..+...|...|++++|+..|++.++. .| +..++..+.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 313 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 23667999999999999999998753 2233 23556788999999999999999999984 44 678888888
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCChHH
Q 003028 648 SCCTEARSPYDMGFCHELMAVSGHPAHM 675 (856)
Q Consensus 648 ~a~~~~g~~~~a~~l~~~m~~~g~~~~~ 675 (856)
..+...|++++|...++...+..+....
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 8999999999999999999988775443
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.1e-14 Score=157.02 Aligned_cols=290 Identities=13% Similarity=0.027 Sum_probs=235.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 358 HDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 358 pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
.+...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+|+++.+.. +.+...|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344567788888888999999999999988763 3455667778888899999999999999998764 45677888888
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 438 DIHAKAG-FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNY 516 (856)
Q Consensus 438 ~~~~k~g-~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~ 516 (856)
..+...| ++++|.+.|++..+.. +.+...|..+...|...|++++|.+.|++..+.... +...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 9999999 8999999999998764 345778889999999999999999999998876432 456777788999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--------CCCCHhhHHHHHHHHHhcCCHHH
Q 003028 517 QSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN--------WVPDEPVYGLLVDLWGKAGNVRK 588 (856)
Q Consensus 517 ~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g--------~~pd~~~y~~Li~~~~k~g~~~~ 588 (856)
++|++.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. ......++..+...|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999988764 3356788888899999999999999999887642 13345788999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH-HhcCC
Q 003028 589 AWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS-LQTYTLLLSCC-TEARS 655 (856)
Q Consensus 589 A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd-~~ty~~Ll~a~-~~~g~ 655 (856)
|...|++..+.. +.+...|..+...|.+.|++++|.+.|++.++ +.|+ ...+..+..++ ...|+
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCc
Confidence 999999998753 45678899999999999999999999999886 4564 45566665555 34454
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.69 E-value=4.4e-14 Score=163.70 Aligned_cols=324 Identities=14% Similarity=0.076 Sum_probs=180.0
Q ss_pred HHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---
Q 003028 333 VLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN--- 409 (856)
Q Consensus 333 vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g--- 409 (856)
++...++++.|++.|+.+.... +.+...|..+..++...|++++|...|+.+.. .|+.. +..+..+...+
T Consensus 68 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~ 140 (537)
T 3fp2_A 68 CYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNK 140 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHH
Confidence 3345689999999999998643 34678899999999999999999999974422 23221 11122222222
Q ss_pred ----------------------------------------------------------------------------CHHH
Q 003028 410 ----------------------------------------------------------------------------YLNE 413 (856)
Q Consensus 410 ----------------------------------------------------------------------------~~~~ 413 (856)
++++
T Consensus 141 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 220 (537)
T 3fp2_A 141 QAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK 220 (537)
T ss_dssp HHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4555
Q ss_pred HHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003028 414 ALDVFKQMQVVGCEPD--------RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAH 485 (856)
Q Consensus 414 A~~lf~~m~~~g~~pd--------~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~ 485 (856)
|..+|+++.+.. |+ ..+|..+...+...|++++|...|+++.+. .|+..++..+...|...|++++|.
T Consensus 221 A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 296 (537)
T 3fp2_A 221 STDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFF 296 (537)
T ss_dssp HHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHH
T ss_pred HHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHH
Confidence 555555555432 22 123444445555566666666666666554 234555555666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003028 486 QLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN 565 (856)
Q Consensus 486 ~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g 565 (856)
+.|+.+.+... .+..+|..+...|...|++++|+..|+++..... .+...+..+...+...|++++|..+++.+.+..
T Consensus 297 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 297 KFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666554422 2455566666666666666666666666555431 123455555566666666666666666665543
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHH
Q 003028 566 WVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG-----LRPNVPTCNSLLSAFLRV----------GQLSDAYHLLQG 630 (856)
Q Consensus 566 ~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g-----~~pd~~t~n~Li~ay~~~----------g~~e~A~~l~~~ 630 (856)
+.+..++..+...|...|++++|...|+++.+.. .......+..+...|... |++++|+..|++
T Consensus 375 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 453 (537)
T 3fp2_A 375 -PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453 (537)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH
Confidence 2234455566666666666666666666654321 111122233344455555 666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003028 631 MLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 631 M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~ 671 (856)
+++.. ..+...+..+...+...|++++|...++...+..+
T Consensus 454 a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 454 ACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 65521 22344555555556666666666555555554443
No 16
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=6.6e-17 Score=192.46 Aligned_cols=115 Identities=14% Similarity=0.169 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMV---RDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~---~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
.+||+||++|++.|++++|.++|++|. ..|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||.+|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 345555555555555555555554443 22444555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003028 438 DIHAKAGF-LDVAMDMYKKMQAAGLSPDTFTYSVIINCL 475 (856)
Q Consensus 438 ~~~~k~g~-~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y 475 (856)
+++++.|+ .++|.++|++|.+.|+.||..+|+.++..+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 55555444 244445555555555555555555444433
No 17
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=7.1e-17 Score=192.19 Aligned_cols=118 Identities=13% Similarity=0.172 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQV---VGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVI 471 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~---~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~L 471 (856)
..|||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||..|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 44566666666666666666666655432 355566666666666666666666666666666666666666666666
Q ss_pred HHHHHccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 472 INCLGKAGH-LQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512 (856)
Q Consensus 472 i~~y~k~g~-~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~ 512 (856)
|++||+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 666666555 34555666666666666666666655544333
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.67 E-value=8.1e-15 Score=161.16 Aligned_cols=287 Identities=11% Similarity=-0.009 Sum_probs=153.2
Q ss_pred hChhHHHH-HHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003028 338 QDHTVALG-FFNWLRRQAGFKH--DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEA 414 (856)
Q Consensus 338 ~~~~~Al~-~f~~m~~~~g~~p--d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A 414 (856)
++++.|+. .|........-.| +...+..+...+.+.|++++|..+|+++.+.. +.+...|..+..+|.+.|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555665 5553322111111 23456677777778888888888888877653 34666777777778888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHccC
Q 003028 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSV---------------IINCLGKAG 479 (856)
Q Consensus 415 ~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~---------------Li~~y~k~g 479 (856)
++.|+++.+.. +.+..++..+...|...|++++|.+.|+++...... +...+.. .+..+...|
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 88888777654 446677777777777788888888888777765321 2222211 122222555
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003028 480 HLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVF 558 (856)
Q Consensus 480 ~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~ 558 (856)
++++|..+|+++.+..... +..+|..+...|...|++++|+..|+++.... +.+...+..+...+...|++++|...|
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555432111 24455555555555555555555555554432 122444555555555555555555555
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003028 559 AEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLR----------PNVPTCNSLLSAFLRVGQLSDAYHLL 628 (856)
Q Consensus 559 ~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~----------pd~~t~n~Li~ay~~~g~~e~A~~l~ 628 (856)
+.+.+.. +.+..++..+..+|.+.|++++|...|++..+..-. ....+|..+..+|...|++++|..++
T Consensus 275 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 275 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 5554432 223444555555555555555555555554432100 01344555555555555555555444
Q ss_pred H
Q 003028 629 Q 629 (856)
Q Consensus 629 ~ 629 (856)
+
T Consensus 354 ~ 354 (368)
T 1fch_A 354 A 354 (368)
T ss_dssp T
T ss_pred H
Confidence 3
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.3e-13 Score=148.53 Aligned_cols=283 Identities=12% Similarity=0.049 Sum_probs=236.0
Q ss_pred HHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-C
Q 003028 332 QVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN-Y 410 (856)
Q Consensus 332 ~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g-~ 410 (856)
..+...++++.|+.+|+.+.+..... ...+..++..+...|++++|..+|+++.+.. +.+...|..+...|...| +
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKDPFH--ASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC--TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC--hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhh
Confidence 34445589999999999998755433 3467778888999999999999999998863 346788999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003028 411 LNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCE 490 (856)
Q Consensus 411 ~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~ 490 (856)
+++|.+.|++..... +.+...|..+...+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|.+.|++
T Consensus 107 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 107 NEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999998764 4567889999999999999999999999998874 33567777899999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003028 491 MVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG--------FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMR 562 (856)
Q Consensus 491 m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g--------i~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~ 562 (856)
..+... .+...|..+...|...|++++|+..|+++.+.. ...+..++..+...+...|++++|...++...
T Consensus 185 al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 185 ALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 987643 367889999999999999999999999887642 13335688899999999999999999999998
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCCHH
Q 003028 563 RKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAF-LRVGQLS 622 (856)
Q Consensus 563 ~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay-~~~g~~e 622 (856)
+.. +.+...+..+...|.+.|++++|...|++..+.. +.+...+..+..++ ...|+.+
T Consensus 264 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 264 VLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred hhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 865 3367889999999999999999999999988643 44778888888888 4555543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.66 E-value=1.3e-14 Score=159.50 Aligned_cols=289 Identities=10% Similarity=0.030 Sum_probs=229.1
Q ss_pred HhcCCHHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 371 GRARQFGAINK-LLDQMVRDGC-QP--NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFL 446 (856)
Q Consensus 371 ~k~g~~~~A~~-lf~~m~~~g~-~p--d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~ 446 (856)
...|++++|.. .|++...... .| +...|..+...|.+.|++++|+.+|+++.+.. +.+..+|..+..++.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578888888 7775543211 11 34568889999999999999999999999875 56788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHH
Q 003028 447 DVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNI---------------MIALQA 511 (856)
Q Consensus 447 ~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~---------------Li~~~~ 511 (856)
++|.+.|+++.+.. +.+..++..+...|...|++++|.+.|+.+...... +...+.. .+..+.
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 99999999999874 457899999999999999999999999999876432 2222221 244444
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 003028 512 KARNYQSALKLYRDMQNAGFEP-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAW 590 (856)
Q Consensus 512 ~~g~~~~A~~ll~~M~~~gi~p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~ 590 (856)
..|++++|+.+|+++.+..... +..++..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999998764322 57888999999999999999999999998864 346789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---C-------CHHHHHHHHHHHHhcCCcchHH
Q 003028 591 EWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLK---P-------SLQTYTLLLSCCTEARSPYDMG 660 (856)
Q Consensus 591 ~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~---P-------d~~ty~~Ll~a~~~~g~~~~a~ 660 (856)
..|+++.+.. +.+...|..+...|.+.|++++|...|+++++..-. | ...+|..+..++...|+.+++.
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999998753 456889999999999999999999999999863111 1 1578999999999999999988
Q ss_pred HHHH
Q 003028 661 FCHE 664 (856)
Q Consensus 661 ~l~~ 664 (856)
.+.+
T Consensus 351 ~~~~ 354 (368)
T 1fch_A 351 AADA 354 (368)
T ss_dssp HHHT
T ss_pred HhHH
Confidence 7754
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.63 E-value=3.2e-14 Score=156.73 Aligned_cols=265 Identities=9% Similarity=-0.052 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
...|..+...+.+.|++++|..+|+.+.+.. +.+...|..+...|.+.|++++|++.|+++.+.. +.+..+|..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3457888889999999999999999998763 4578889999999999999999999999988764 4568889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPD-----------TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCI-PNLVTYNIMI 507 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd-----------~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~-pd~~ty~~Li 507 (856)
|...|++++|.+.|+++.+.. |+ ..++..+...|.+.|++++|.++|+++.+.... .+..+|..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999987752 22 223344577788888888888888888775322 1577788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 003028 508 ALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVR 587 (856)
Q Consensus 508 ~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~ 587 (856)
..|...|++++|++.|+++.+.. +.+..+|..+..+|...|++++|...|+.+.+.. +.+..++..+..+|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 88888888888888888877653 2346677778888888888888888888877653 234677777788888888888
Q ss_pred HHHHHHHHHHHcCC---C--------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 588 KAWEWYEAMLQAGL---R--------PNVPTCNSLLSAFLRVGQLSDAYHLLQG 630 (856)
Q Consensus 588 ~A~~l~~~m~~~g~---~--------pd~~t~n~Li~ay~~~g~~e~A~~l~~~ 630 (856)
+|...|++..+..- . .+...|..+..+|...|+.+.|..+..+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 88888887765310 0 1256677777777778877777665543
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.63 E-value=9.6e-14 Score=149.29 Aligned_cols=265 Identities=8% Similarity=-0.035 Sum_probs=194.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
.+..+...+...|++++|..+|+++.+.. +.+...|..+..+|.+.|++++|.+.|+++.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 45566777778888888888888887653 3467777788888888888888888888887764 446777888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 442 KAGFLDVAMDMYKKMQAAGLSPDTFTYSVI--------------IN-CLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIM 506 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~g~~pd~~ty~~L--------------i~-~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~L 506 (856)
..|++++|.+.++++.+... .+...+..+ .. .+...|++++|.++|+++.+... .+...+..+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 178 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASL 178 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHH
Confidence 88888888888888876532 122222222 22 36777888888888888876533 267788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 003028 507 IALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNV 586 (856)
Q Consensus 507 i~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~ 586 (856)
...|...|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 888888888888888888887653 2346677788888888888888888888887754 33567788888888888888
Q ss_pred HHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 587 RKAWEWYEAMLQAGLRP-----------NVPTCNSLLSAFLRVGQLSDAYHLLQGML 632 (856)
Q Consensus 587 ~~A~~l~~~m~~~g~~p-----------d~~t~n~Li~ay~~~g~~e~A~~l~~~M~ 632 (856)
++|...|++..+..... +...|..+..+|.+.|++++|..++++.+
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88888888877642111 36778888888888888888888876543
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.62 E-value=3.5e-14 Score=156.46 Aligned_cols=266 Identities=11% Similarity=0.006 Sum_probs=214.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
+...|..+...+.+.|++++|+++|+++.+.. +.+..+|..+..+|.+.|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888999999999999999999998875 5678899999999999999999999999999874 446899999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQGCI---------PNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFE-PDKVTYSIVME 543 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~g~~---------pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~-pd~~ty~~ll~ 543 (856)
+|...|++++|.+.|+++.+.... .....+..+...|...|++++|+.+|+++...... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999999875211 01223345578899999999999999999886432 26788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 544 VLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSD 623 (856)
Q Consensus 544 a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~ 623 (856)
.+...|++++|...|+++.+.. +.+..++..+..+|.+.|++++|...|++..+.. +.+..+|..+...|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999864 3468899999999999999999999999998753 4468899999999999999999
Q ss_pred HHHHHHHHHHCC---CCC--------CHHHHHHHHHHHHhcCCcchHHHHH
Q 003028 624 AYHLLQGMLNLG---LKP--------SLQTYTLLLSCCTEARSPYDMGFCH 663 (856)
Q Consensus 624 A~~l~~~M~~~g---~~P--------d~~ty~~Ll~a~~~~g~~~~a~~l~ 663 (856)
|...|+++++.. ..+ +...|..+-.++...|+.+.+..+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999998621 111 2567888888888888876655543
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.61 E-value=2.5e-11 Score=140.00 Aligned_cols=338 Identities=12% Similarity=0.108 Sum_probs=170.6
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cC
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGR----ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGR----AN 409 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k----~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~----~g 409 (856)
++.+.|+..|....+. -+...+..|...|.. .+++++|.+.|++..+.| +...+..|-..|.. .+
T Consensus 57 ~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred cCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 3445555555554432 134444455555555 555555555555555432 34444445455544 44
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCH
Q 003028 410 YLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK----AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK----AGHL 481 (856)
Q Consensus 410 ~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k----~g~~ 481 (856)
++++|+++|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 5555555555554433 33444444444444 445555555555555442 34445555555544 4555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHH
Q 003028 482 QAAHQLFCEMVNQGCIPNLVTYNIMIALQAK----ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGH----CGYLDE 553 (856)
Q Consensus 482 ~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~----~g~~~~ 553 (856)
++|.+.|+...+.| +...+..|...|.. .+++++|+.+|++..+.+ +...+..+...|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 55555555554432 33444444444443 455555555555554432 22333334444444 455555
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHH
Q 003028 554 AEAVFAEMRRKNWVPDEPVYGLLVDLWGKA-----GNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVG---QLSDAY 625 (856)
Q Consensus 554 A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~-----g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g---~~e~A~ 625 (856)
|...|+...+.+ +...+..|...|... +++++|..+|++..+.+ +...+..|...|...| ++++|+
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 555555554432 333444444444444 55555555555555432 3344444555554433 445555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 003028 626 HLLQGMLNLGLKPSLQTYTLLLSCCTE----ARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMM 701 (856)
Q Consensus 626 ~l~~~M~~~g~~Pd~~ty~~Ll~a~~~----~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~ 701 (856)
+.|++..+.| +...+..|-..+.. .+++ +.+..+++..
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~-----------------------------------~~A~~~~~~A 393 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDE-----------------------------------QQAAIWMRKA 393 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH-----------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH-----------------------------------HHHHHHHHHH
Confidence 5555555432 33333333333333 2333 3333333333
Q ss_pred hcCCCCchHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCC
Q 003028 702 HSEDRESKRGLVDAVVDFLHK----SGLKEEAGSVWEVAAQKNV 741 (856)
Q Consensus 702 ~~~~~~~~~~~~~aLi~~y~k----~G~~eeA~~lf~~m~~~~~ 741 (856)
...+ +...+..|..+|.+ .++.++|...|++..+.+.
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3222 34467789999998 8999999999999998874
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=4.3e-13 Score=144.15 Aligned_cols=262 Identities=11% Similarity=0.005 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC 474 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~ 474 (856)
...|..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3446677888999999999999999998765 5578889999999999999999999999998873 4578899999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 475 LGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIM--------------IA-LQAKARNYQSALKLYRDMQNAGFEPDKVTYS 539 (856)
Q Consensus 475 y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~L--------------i~-~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~ 539 (856)
|...|++++|.+.|+.+.+.... +...+..+ .. .+...|++++|+.+++++.+.. +.+...+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 99999999999999999876322 22233332 22 3778899999999999998764 33677889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 540 IVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVG 619 (856)
Q Consensus 540 ~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g 619 (856)
.+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...|..+...|...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998864 3467889999999999999999999999998753 456889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCCcchHHHHHH
Q 003028 620 QLSDAYHLLQGMLNLGLKPS-------------LQTYTLLLSCCTEARSPYDMGFCHE 664 (856)
Q Consensus 620 ~~e~A~~l~~~M~~~g~~Pd-------------~~ty~~Ll~a~~~~g~~~~a~~l~~ 664 (856)
++++|.+.|+++++. .|+ ..++..+..++...|+.++|..+++
T Consensus 255 ~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp CHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999873 344 6788888889999999888877654
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=2.1e-11 Score=142.03 Aligned_cols=402 Identities=9% Similarity=0.032 Sum_probs=268.4
Q ss_pred HHHHHHHH--hhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 328 YQANQVLK--QLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSY 405 (856)
Q Consensus 328 ~~~~~vL~--~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~ 405 (856)
..+..++. ..++.+.|..+|+.+... ++.+...|..++..+.+.|++++|..+|+..... .|++..|..++...
T Consensus 14 ~~w~~l~~~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 14 DAWSILIREAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYV 89 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHH
Confidence 34444443 247889999999999863 3456778999999999999999999999999875 47888888887543
Q ss_pred -HhcCCHHHHHH----HHHHHHH-cCCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003028 406 -GRANYLNEALD----VFKQMQV-VGCEP-DRVTYCTLIDIHAK---------AGFLDVAMDMYKKMQAAGLSPDTFTYS 469 (856)
Q Consensus 406 -~~~g~~~~A~~----lf~~m~~-~g~~p-d~~ty~~Ll~~~~k---------~g~~~~A~~l~~~m~~~g~~pd~~ty~ 469 (856)
...|+.++|.+ +|++... .|..| +...|...+....+ .|+++.|..+|++.++.........|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 34566666655 7776654 35444 45677777776655 688999999999998731111123443
Q ss_pred HHHHHH-------------HccCCHHHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHHHc----CC
Q 003028 470 VIINCL-------------GKAGHLQAAHQLFCEMV------NQG---CIPN--------LVTYNIMIALQAKA----RN 515 (856)
Q Consensus 470 ~Li~~y-------------~k~g~~~~A~~lf~~m~------~~g---~~pd--------~~ty~~Li~~~~~~----g~ 515 (856)
...... .+.++++.|..++..+. +.. ++|+ ...|...+...... ++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 322211 13456777887777632 111 2333 24566655443332 22
Q ss_pred H----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCCCCCHhhHHHHH
Q 003028 516 Y----QSALKLYRDMQNAGFEPDKVTYSIVMEVLGH-------CGYLD-------EAEAVFAEMRRKNWVPDEPVYGLLV 577 (856)
Q Consensus 516 ~----~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~-------~g~~~-------~A~~l~~~m~~~g~~pd~~~y~~Li 577 (856)
. .++..+|++..... +-+...|......+.. .|+++ +|..+|+...+.-.+-+...+..++
T Consensus 250 ~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2 47788898887752 3356677777777765 68887 8999999988632334688899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhc
Q 003028 578 DLWGKAGNVRKAWEWYEAMLQAGLRPN-V-PTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS-LQTYTLLLSC-CTEA 653 (856)
Q Consensus 578 ~~~~k~g~~~~A~~l~~~m~~~g~~pd-~-~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd-~~ty~~Ll~a-~~~~ 653 (856)
..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++.++. .|+ ...|...... +...
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHc
Confidence 9999999999999999999984 454 3 58999999999999999999999999874 333 2333322222 3357
Q ss_pred CCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC-CCCc--hHHHHHHHHHHHHhCCChhHHH
Q 003028 654 RSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSE-DRES--KRGLVDAVVDFLHKSGLKEEAG 730 (856)
Q Consensus 654 g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~-~~~~--~~~~~~aLi~~y~k~G~~eeA~ 730 (856)
|+.++|..+++...+..+....++..+....... +..+.+..+++..... ...| ...+|..++....+.|+.+.+.
T Consensus 405 ~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~-g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-TCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC-CCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8889999998887776554333332222111112 2345555555554433 2222 2447778888888888888888
Q ss_pred HHHHHHHhC
Q 003028 731 SVWEVAAQK 739 (856)
Q Consensus 731 ~lf~~m~~~ 739 (856)
.+++++.+.
T Consensus 484 ~~~~r~~~~ 492 (530)
T 2ooe_A 484 KVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.56 E-value=9.5e-13 Score=141.36 Aligned_cols=255 Identities=13% Similarity=0.059 Sum_probs=172.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 368 GILGRARQFGAINKLLDQMVRDGCQPNV--VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF 445 (856)
Q Consensus 368 ~~~~k~g~~~~A~~lf~~m~~~g~~pd~--~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~ 445 (856)
+-....|++..|...++..... .|+. .....+..+|...|++++|+..++.. -.|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 3344567777777776655332 2332 24455667777788887777766442 25566777777777777777
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSP-DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYR 524 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~p-d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 524 (856)
.++|++.++++...+..| +...+..+...|...|++++|.+.|++ +.+...+..+...|.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888777765434 455556666777788888888887776 3467777777788888888888888888
Q ss_pred HHHHcCCCCCHHHHHHH----HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003028 525 DMQNAGFEPDKVTYSIV----MEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG 600 (856)
Q Consensus 525 ~M~~~gi~pd~~ty~~l----l~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g 600 (856)
++.+.. |+.. ...+ +..+...|++++|..+|+++.+.. +.+...++.+..+|.+.|++++|...|++..+..
T Consensus 155 ~~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 155 KMQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 877653 4422 2222 233334477888888888887753 4567777788888888888888888888877642
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCCCCCCHH
Q 003028 601 LRPNVPTCNSLLSAFLRVGQLSD-AYHLLQGMLNLGLKPSLQ 641 (856)
Q Consensus 601 ~~pd~~t~n~Li~ay~~~g~~e~-A~~l~~~M~~~g~~Pd~~ 641 (856)
+-+..+|..++..+...|+.++ +.++++++++ +.|+..
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 4467777788888888887765 4677777776 455543
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.55 E-value=1.8e-14 Score=160.24 Aligned_cols=240 Identities=13% Similarity=0.165 Sum_probs=94.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003028 372 RARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMD 451 (856)
Q Consensus 372 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~ 451 (856)
+.|++++|.++++++.. ..+|..|..++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 56778888888887732 247888888888888888888888653 566788888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003028 452 MYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGF 531 (856)
Q Consensus 452 l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi 531 (856)
+++...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77666553 4456778888888888888888887774 266778888888888888888888888866
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 532 EPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSL 611 (856)
Q Consensus 532 ~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~L 611 (856)
..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+ ..++.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 36788888888888888888888877 26778888888888888888885554432 2344445568
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003028 612 LSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEA 653 (856)
Q Consensus 612 i~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~ 653 (856)
+..|.+.|++++|+.+++..+... .-....|+-|--++++-
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc
Confidence 888888888888888888877533 33345565555555554
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=8.5e-12 Score=142.23 Aligned_cols=366 Identities=10% Similarity=-0.040 Sum_probs=237.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRD--------GCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVV-----G 425 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~--------g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~-----g 425 (856)
....||.|..++...|++++|++.|++..+. .-+....+|+.+...|...|++++|...|++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567899999999999999999999876541 11234678999999999999999999999887542 1
Q ss_pred -C-CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHccCCHHHHHHHHHHHHHcCCCC
Q 003028 426 -C-EPDRVTYCTLIDIHAKA--GFLDVAMDMYKKMQAAGLSPDTFTYSVIINC---LGKAGHLQAAHQLFCEMVNQGCIP 498 (856)
Q Consensus 426 -~-~pd~~ty~~Ll~~~~k~--g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~---y~k~g~~~~A~~lf~~m~~~g~~p 498 (856)
. .....+|..+..++.+. +++++|++.|++..+.. +-+...+..+..+ +...++.++|.+.|++..+... .
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-D 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-c
Confidence 0 12345666665555554 46899999999988763 2245555554444 4456777888888887776532 2
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHH
Q 003028 499 NLVTYNIMIALQAK----ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYG 574 (856)
Q Consensus 499 d~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~ 574 (856)
+...+..+...+.. .+++++|.+++++..... +.+...+..+...|...|++++|...++...+.. +-+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 55566655555544 466788999998887653 3346678888889999999999999999988754 23556666
Q ss_pred HHHHHHHhc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003028 575 LLVDLWGKA-------------------GNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLG 635 (856)
Q Consensus 575 ~Li~~~~k~-------------------g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g 635 (856)
.+...|... +.++.|...|+...+.. +.+...|..+...|...|++++|++.|++.++..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 666555432 23567788888777643 3456678889999999999999999999999854
Q ss_pred CCCCHH--HHHHHHH-HHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHH
Q 003028 636 LKPSLQ--TYTLLLS-CCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGL 712 (856)
Q Consensus 636 ~~Pd~~--ty~~Ll~-a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~ 712 (856)
..|... .+..+.. .....|+.++|...+++..+..+....... ....+..+.+......+ .+..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~-----------~~~~l~~~~~~~l~~~p-~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK-----------MKDKLQKIAKMRLSKNG-ADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH-----------HHHHHHHHHHHHHHHCC--CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH-----------HHHHHHHHHHHHHHhCC-CCHHH
Confidence 333221 1222222 234678888999888888777664432211 22333444443332222 24557
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 003028 713 VDAVVDFLHKSGLKEEAGSVWEVAAQKNV 741 (856)
Q Consensus 713 ~~aLi~~y~k~G~~eeA~~lf~~m~~~~~ 741 (856)
|..|+..|...|++++|++.|++..+.+.
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999988653
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.55 E-value=1.4e-12 Score=140.04 Aligned_cols=254 Identities=13% Similarity=0.119 Sum_probs=202.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003028 402 IHSYGRANYLNEALDVFKQMQVVGCEPDR--VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG 479 (856)
Q Consensus 402 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g 479 (856)
|+-....|+++.|+..+++.... .|+. .....+..+|...|+++.|+..++. .-+|+..++..+...|...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34456689999999999876543 3443 4566778999999999999987754 24567888999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003028 480 HLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVF 558 (856)
Q Consensus 480 ~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~ 558 (856)
+.++|.+.++++...+..| +...+..+...|...|++++|++.|++ ..+...+..+...+.+.|+.++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998876545 556667777999999999999999987 456778899999999999999999999
Q ss_pred HHHHHcCCCCCHhhH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003028 559 AEMRRKNWVPDEPVY---GLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLG 635 (856)
Q Consensus 559 ~~m~~~g~~pd~~~y---~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g 635 (856)
+.+.+.. |+...+ ..++..+...|++++|..+|+++.+. .+.+...|+.+..+|.+.|++++|...|++.++..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999864 443221 22344455669999999999999987 46789999999999999999999999999999842
Q ss_pred CCCCHHHHHHHHHHHHhcCCcch-HHHHHHHHHHcCC
Q 003028 636 LKPSLQTYTLLLSCCTEARSPYD-MGFCHELMAVSGH 671 (856)
Q Consensus 636 ~~Pd~~ty~~Ll~a~~~~g~~~~-a~~l~~~m~~~g~ 671 (856)
.-+..++..+...+...|+.++ +..+++.+.+..+
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 2356788888888888888754 3456555554443
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.55 E-value=5.1e-14 Score=156.66 Aligned_cols=257 Identities=11% Similarity=0.096 Sum_probs=114.0
Q ss_pred HHHHHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003028 329 QANQVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRA 408 (856)
Q Consensus 329 ~~~~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~ 408 (856)
....+|..+++.+.|.++++.+.. +.+|..|..++.+.|++++|.+.|.+. +|..+|..++..+...
T Consensus 8 a~~~ll~~~~~ld~A~~fae~~~~-------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 8 AVQVLIEHIGNLDRAYEFAERCNE-------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHccCHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC
Confidence 355678888999999999998843 349999999999999999999999642 5778999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003028 409 NYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLF 488 (856)
Q Consensus 409 g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf 488 (856)
|++++|+.+++...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y 145 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLY 145 (449)
T ss_dssp ------------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999988777663 5667889999999999999999998885 367789999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003028 489 CEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVP 568 (856)
Q Consensus 489 ~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~p 568 (856)
..+ ..|..|+.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +..
T Consensus 146 ~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~ 205 (449)
T 1b89_A 146 NNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVV 205 (449)
T ss_dssp HHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTT
T ss_pred HHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHh
Confidence 977 36999999999999999999999988 2788999999999999999999655443 333
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 003028 569 DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRV--GQLSDAYHLL 628 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~--g~~e~A~~l~ 628 (856)
++.-...++..|.+.|.+++|..+++...... +-....|+.|...|++- +++.+.+++|
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44556679999999999999999999988654 56678888888888865 2344444444
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.54 E-value=1.1e-10 Score=134.62 Aligned_cols=307 Identities=13% Similarity=0.104 Sum_probs=260.9
Q ss_pred hhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGR----ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGR----A 408 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k----~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~----~ 408 (856)
.++.+.|++.|+..... | +...+..|..+|.. .+++++|...|+...+.| +...+..|...|.. .
T Consensus 92 ~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALK-G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 46888999999998753 2 67788889899988 889999999999998864 67788888888887 7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCC
Q 003028 409 NYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK----AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK----AGH 480 (856)
Q Consensus 409 g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k----~g~ 480 (856)
+++++|++.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++
T Consensus 165 ~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 89999999999998865 67888889999988 899999999999998875 66788888888886 889
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCh
Q 003028 481 LQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK----ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHC-----GYL 551 (856)
Q Consensus 481 ~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~-----g~~ 551 (856)
+++|.++|+...+.| +...+..|...|.. .+++++|++.|++..+.| +...+..+...|... ++.
T Consensus 239 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCH
Confidence 999999999998763 56777778888888 899999999999998765 455677777888777 899
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 003028 552 DEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAG---NVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR----VGQLSDA 624 (856)
Q Consensus 552 ~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g---~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~----~g~~e~A 624 (856)
++|...|+...+.+ +...+..|...|...| ++++|.++|++..+.+ +...+..|...|.. .+++++|
T Consensus 313 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 313 EQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99999999999875 5567888888888766 8899999999999864 78899999999999 8999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHcCC
Q 003028 625 YHLLQGMLNLGLKPSLQTYTLLLSCCTE----ARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 625 ~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~----~g~~~~a~~l~~~m~~~g~ 671 (856)
+..|++..+.+ +...+..|-..+.. .++.++|...++...+.++
T Consensus 387 ~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 387 AIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999865 56677777777776 7888888888888877764
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=1.8e-11 Score=142.55 Aligned_cols=374 Identities=9% Similarity=0.069 Sum_probs=263.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 358 HDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 358 pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
-+...|..++.. .+.|++++|..+|+.+.+. .+.+...|..++..+.+.|++++|..+|+++... .|+...|..++
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 367789999984 7899999999999999975 4557889999999999999999999999999875 47877887777
Q ss_pred HHH-HHcCCHHHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHcCCCCCHH
Q 003028 438 DIH-AKAGFLDVAMD----MYKKMQAA-GLSP-DTFTYSVIINCLGK---------AGHLQAAHQLFCEMVNQGCIPNLV 501 (856)
Q Consensus 438 ~~~-~k~g~~~~A~~----l~~~m~~~-g~~p-d~~ty~~Li~~y~k---------~g~~~~A~~lf~~m~~~g~~pd~~ 501 (856)
... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|.++|++..+........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 35677776665 77776553 5443 56788887776654 789999999999998741111123
Q ss_pred HHHHHHHHH-------------HHcCCHHHHHHHHHHHHH------cC---CCCC--------HHHHHHHHHHHHhc---
Q 003028 502 TYNIMIALQ-------------AKARNYQSALKLYRDMQN------AG---FEPD--------KVTYSIVMEVLGHC--- 548 (856)
Q Consensus 502 ty~~Li~~~-------------~~~g~~~~A~~ll~~M~~------~g---i~pd--------~~ty~~ll~a~~~~--- 548 (856)
.|....... .+.+++.+|..++.++.. .. +.|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 444332211 124567778777776431 11 2443 23444444332221
Q ss_pred -CCh----HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHH
Q 003028 549 -GYL----DEAEAVFAEMRRKNWVPDEPVYGLLVDLWGK-------AGNVR-------KAWEWYEAMLQAGLRPNVPTCN 609 (856)
Q Consensus 549 -g~~----~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k-------~g~~~-------~A~~l~~~m~~~g~~pd~~t~n 609 (856)
++. ..+..+|++..... +.+...|..+...+.+ .|+++ +|..+|++..+.-.+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 36778898888753 3467888888888775 79987 8999999988632345689999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC-hHHHHHhcCCCCCC
Q 003028 610 SLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL--QTYTLLLSCCTEARSPYDMGFCHELMAVSGHP-AHMFLLSMPSPGPD 686 (856)
Q Consensus 610 ~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~--~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~-~~~~~~~l~~~~~~ 686 (856)
.++..+.+.|++++|..+|+++++ +.|+. ..|..+...+.+.|+.++|..+++...+..+. .+.++......+..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 999999999999999999999998 45653 47888888888899999999999988876553 22222111000001
Q ss_pred cccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 687 GQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 687 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
.+ ..+.+..+++......+ .+..+|..+++++.+.|+.++|..+|++....+
T Consensus 404 ~~-~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 404 SK-DKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TC-CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred cC-ChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 12 23555555554433322 246778999999999999999999999999874
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.1e-11 Score=128.20 Aligned_cols=222 Identities=14% Similarity=0.092 Sum_probs=124.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGL--SPD----TFTYSVI 471 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~--~pd----~~ty~~L 471 (856)
|..+...+...|++++|+.+|+++.+.. .+...|..+..+|...|++++|.+.+++..+... .++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444444444444444444444444433 3444444444444444445544444444443210 011 3445555
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003028 472 INCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYL 551 (856)
Q Consensus 472 i~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~ 551 (856)
...|...|++++|...|++..+.. |+. ..+...|++++|+..++++.... +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 555555555555555555555431 221 23444555666666666655532 11234555566666666777
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 552 DEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGM 631 (856)
Q Consensus 552 ~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M 631 (856)
++|...++.+.+.. +.+..++..+...|.+.|++++|...|++..+.. +.+...|..+...|...|++++|...|++.
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777776666543 2356667777777777777777777777777642 345677777777888888888888887777
Q ss_pred HH
Q 003028 632 LN 633 (856)
Q Consensus 632 ~~ 633 (856)
++
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.3e-11 Score=125.66 Aligned_cols=226 Identities=14% Similarity=0.043 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGC--EPD----RVTY 433 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~--~pd----~~ty 433 (856)
...|..+...+...|++++|..+|++..+.. .+...|..+..+|...|++++|++.|++..+... .++ ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3478888999999999999999999999876 7888999999999999999999999999876431 112 5788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 434 CTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKA 513 (856)
Q Consensus 434 ~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~ 513 (856)
..+...|...|++++|...|++..+. .|+. ..+.+.|++++|...++.+..... .+...|..+...|...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence 99999999999999999999999885 3443 456677889999999999887532 2566788899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 003028 514 RNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWY 593 (856)
Q Consensus 514 g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~ 593 (856)
|++++|+..|+++.... +.+...+..+...+...|++++|...++...+.. +.+...+..+...|.+.|++++|...|
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999998764 3357788899999999999999999999998865 346788999999999999999999999
Q ss_pred HHHHHc
Q 003028 594 EAMLQA 599 (856)
Q Consensus 594 ~~m~~~ 599 (856)
++..+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988763
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.43 E-value=2.5e-10 Score=140.37 Aligned_cols=318 Identities=14% Similarity=0.112 Sum_probs=224.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
..-+...+...|.+++|..+|++.. ......+.++. ..+++++|.+++++. -+..+|..+..++.+
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 3446777778888888888887753 12223344433 667788888888765 246778888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKL 522 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 522 (856)
.|++++|.+.|.+. -|...|.-++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence 88888888888553 467778888888888888888888888766543 2332333488888888887754433
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003028 523 YRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLR 602 (856)
Q Consensus 523 l~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~ 602 (856)
+ + .++...|..+...|...|++++|..+|... ..|..+...|++.|+++.|.+.+++.
T Consensus 1190 I----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------ 1247 (1630)
T 1xi4_A 1190 I----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------ 1247 (1630)
T ss_pred H----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------
Confidence 2 1 345566677888888888888888888874 36888888888888888888888766
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHH---h
Q 003028 603 PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLL---S 679 (856)
Q Consensus 603 pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~---~ 679 (856)
.+..+|..+-.+|...|++..|...... +..+...+..++..|...|.+++|..+++...... +.|.-+. .
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence 3668888888888888888888776543 33455666678888888888888888887666555 3443322 1
Q ss_pred cCCCCCCcccHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHHhCCChhHHH
Q 003028 680 MPSPGPDGQNVRDHVGSFLEMMHSED---RESKRGLVDAVVDFLHKSGLKEEAG 730 (856)
Q Consensus 680 l~~~~~~~~~~~~~a~~l~~~~~~~~---~~~~~~~~~aLi~~y~k~G~~eeA~ 730 (856)
.+......++..+++..++..+.... ..-+..+|.-++-.|.+.|+++.|.
T Consensus 1322 iLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 12222344566777777776654321 1125678999999999999999998
No 37
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.39 E-value=1.1e-10 Score=120.86 Aligned_cols=197 Identities=13% Similarity=0.041 Sum_probs=100.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 433 YCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512 (856)
Q Consensus 433 y~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~ 512 (856)
|..+...+...|++++|.++|+++.+.. +.+..++..+...|...|++++|.++|+++.+... .+...|..+...|..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHH
Confidence 3334444444444444444444444331 22344444444444445555555555544443321 134444555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 003028 513 ARNYQSALKLYRDMQNAGFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWE 591 (856)
Q Consensus 513 ~g~~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~ 591 (856)
.|++++|+++|+++...+..|+ ...+..+...+...|++++|...++++.+.. ..+...+..+...|...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555544222232 3344445555555555555555555555433 2234555666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 592 WYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 592 l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+|+++.+.. +.+...+..+...|...|++++|.++++++.+
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666665432 34455566666666666666666666666665
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.38 E-value=5.7e-10 Score=117.49 Aligned_cols=220 Identities=12% Similarity=0.064 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003028 396 VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK----AGFLDVAMDMYKKMQAAGLSPDTFTYSVI 471 (856)
Q Consensus 396 ~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~ty~~L 471 (856)
..+..+...|...|++++|++.|++..+. -+...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 33444444444444555555544444441 123344444444444 445555555554444443 34444444
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 472 INCLGK----AGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK----ARNYQSALKLYRDMQNAGFEPDKVTYSIVME 543 (856)
Q Consensus 472 i~~y~k----~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~ 543 (856)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 444444 455555555555444432 34444444444444 455555555555444433 2233333334
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 544 VLGH----CGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGK----AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAF 615 (856)
Q Consensus 544 a~~~----~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay 615 (856)
.|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 4433 444444444444444432 23344444444444 455555555555444432 234444444444
Q ss_pred HH----cCCHHHHHHHHHHHHH
Q 003028 616 LR----VGQLSDAYHLLQGMLN 633 (856)
Q Consensus 616 ~~----~g~~e~A~~l~~~M~~ 633 (856)
.. .+++++|++.|++..+
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHH
Confidence 44 4455555555544444
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.38 E-value=1.9e-10 Score=116.13 Aligned_cols=201 Identities=10% Similarity=0.005 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC 474 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~ 474 (856)
...|..+...+...|++++|.+.|+++.+.. +.+...|..+...|...|++++|.++|+++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4445555555566666666666665555442 3334455555555555555555555555555432 2244445555555
Q ss_pred HHcc-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 003028 475 LGKA-GHLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLD 552 (856)
Q Consensus 475 y~k~-g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~ 552 (856)
|... |++++|.++|+.+.+.+..| +...|..+...|...|++++|+..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---------------------------- 137 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLK---------------------------- 137 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHH----------------------------
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH----------------------------
Confidence 5555 55555555555554421111 13344444444444444444444444
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 553 EAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGML 632 (856)
Q Consensus 553 ~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~ 632 (856)
++.+.. ..+...+..+...|.+.|++++|..+|+++.+.....+...+..+...+...|+.++|..+++.+.
T Consensus 138 -------~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 138 -------RSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp -------HHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------HHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444332 113444555555555555555555555555543211344455555555555555555555555554
Q ss_pred H
Q 003028 633 N 633 (856)
Q Consensus 633 ~ 633 (856)
+
T Consensus 210 ~ 210 (225)
T 2vq2_A 210 A 210 (225)
T ss_dssp H
T ss_pred H
Confidence 3
No 40
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.37 E-value=3.8e-10 Score=113.84 Aligned_cols=203 Identities=10% Similarity=0.026 Sum_probs=167.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
+...|..+...+...|++++|.++|+.+.+.. +.+...|..+...|...|++++|.++|+++.... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45678888999999999999999999998753 3468889999999999999999999999998764 557788999999
Q ss_pred HHHHc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 439 IHAKA-GFLDVAMDMYKKMQAAGLSP-DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNY 516 (856)
Q Consensus 439 ~~~k~-g~~~~A~~l~~~m~~~g~~p-d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~ 516 (856)
.+... |++++|...++++.+.+..| +...+..+..+|...|++++|...|+++.+... .+...+..+...|...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 99999 99999999999998833333 367788899999999999999999999887632 2577888888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003028 517 QSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK 564 (856)
Q Consensus 517 ~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~ 564 (856)
++|..+|+++.......+...+..+...+...|+.+.+..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999998877543245666777777777888888888888887654
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.36 E-value=2.1e-09 Score=113.12 Aligned_cols=232 Identities=13% Similarity=0.051 Sum_probs=202.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 429 DRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK----AGHLQAAHQLFCEMVNQGCIPNLVTYN 504 (856)
Q Consensus 429 d~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k----~g~~~~A~~lf~~m~~~g~~pd~~ty~ 504 (856)
+..++..+...|...|++++|++.|++..+. -+...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677888889999999999999999999984 366788889999999 999999999999999875 788899
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 003028 505 IMIALQAK----ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGH----CGYLDEAEAVFAEMRRKNWVPDEPVYGLL 576 (856)
Q Consensus 505 ~Li~~~~~----~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~----~g~~~~A~~l~~~m~~~g~~pd~~~y~~L 576 (856)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999998875 67788888889998 999999999999999876 56788888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 577 VDLWGK----AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR----VGQLSDAYHLLQGMLNLGLKPSLQTYTLLLS 648 (856)
Q Consensus 577 i~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~----~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~ 648 (856)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+-.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888988 999999999999999864 67888999999999 999999999999999864 2667777777
Q ss_pred HHHh----cCCcchHHHHHHHHHHcCCChHHHHH
Q 003028 649 CCTE----ARSPYDMGFCHELMAVSGHPAHMFLL 678 (856)
Q Consensus 649 a~~~----~g~~~~a~~l~~~m~~~g~~~~~~~~ 678 (856)
.+.. .++.++|...+++..+.+++......
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888 89999999999999988875544433
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.36 E-value=2e-11 Score=127.78 Aligned_cols=245 Identities=11% Similarity=0.013 Sum_probs=114.1
Q ss_pred CCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 374 RQFGAINKLLDQMVRDGCQ---PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAM 450 (856)
Q Consensus 374 g~~~~A~~lf~~m~~~g~~---pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~ 450 (856)
|++++|...|+++.+.... .+...|..+...|...|++++|++.|+++.+.. +.+..+|..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555443110 123344555555555555555555555554432 234455555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003028 451 DMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG 530 (856)
Q Consensus 451 ~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g 530 (856)
+.|+++++.. +.+..++..+..+|.+.|++++|.+.|+++.+. .|+...+..++..+...|++++|+..+.+.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 5555555432 223445555555555555555555555555543 2232233333333344455555555555444332
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003028 531 FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWV---PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPT 607 (856)
Q Consensus 531 i~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~---pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t 607 (856)
+++...+ .++..+...++.++|...+....+.... .+..++..+...|.+.|++++|...|++..+. .|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--
Confidence 1222222 2444444455555555555544332110 01345555556666666666666666666543 2321
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 003028 608 CNSLLSAFLRVGQLSDAYHLL 628 (856)
Q Consensus 608 ~n~Li~ay~~~g~~e~A~~l~ 628 (856)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 222234455555555555444
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.36 E-value=2e-10 Score=118.79 Aligned_cols=200 Identities=10% Similarity=0.009 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
...|..+...+...|++++|..+|+++.+.. +.+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556666777777777777777777766542 2356666666677777777777777777666543 3345566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSP-DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQS 518 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~p-d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 518 (856)
|...|++++|.++|+++.+.+..| +...+..+...|...|++++|.+.|++..+... .+...|..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665522222 344455555555556666666666655554321 134455555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 519 ALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 519 A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
|..+|+++.+.. +.+...+..+...+...|+.++|.++++.+.+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555554422 12333444444444445555555555554444
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.35 E-value=7.7e-11 Score=120.38 Aligned_cols=90 Identities=19% Similarity=0.130 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 538 YSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR 617 (856)
Q Consensus 538 y~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~ 617 (856)
+..+..++...|++++|...|++..+.. .+...+..+..+|...|++++|...|++..+.. +.+...+..+...|.+
T Consensus 121 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 121 HLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 3333334444444444444444444333 233444444444444444444444444444321 2233344444444444
Q ss_pred cCCHHHHHHHHHH
Q 003028 618 VGQLSDAYHLLQG 630 (856)
Q Consensus 618 ~g~~e~A~~l~~~ 630 (856)
.|++++|+..|++
T Consensus 198 ~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 198 KGKAEEAARAAAL 210 (217)
T ss_dssp -------------
T ss_pred ccCHHHHHHHHHH
Confidence 4444444444433
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.35 E-value=9e-11 Score=119.86 Aligned_cols=199 Identities=16% Similarity=0.004 Sum_probs=127.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVII 472 (856)
Q Consensus 393 pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li 472 (856)
++...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..|++.++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 456667777777777777777777777776653 4456677777777777777777777777777653 33566777777
Q ss_pred HHHHcc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 473 NCLGKA-----------GHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIV 541 (856)
Q Consensus 473 ~~y~k~-----------g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~l 541 (856)
.+|.+. |++++|...|++..+.... +...|..+...|...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 7777777777777664322 45666677777777777777777777776665 556666677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 542 MEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 542 l~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
..++...|++++|...|+...+.. +.+...+..+...+.+.|++++|...|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777777777777777777776643 2355666677777777777777777776654
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.34 E-value=1.5e-10 Score=121.05 Aligned_cols=228 Identities=12% Similarity=0.034 Sum_probs=103.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccC
Q 003028 402 IHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSP--DTFTYSVIINCLGKAG 479 (856)
Q Consensus 402 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~p--d~~ty~~Li~~y~k~g 479 (856)
...+...|++++|+..|++..+.. +.+...+..+..+|...|++++|++.+++..+....+ ...+|..+...|...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 334444444444444444444332 1223344444444444444444444444444421111 1222444444455555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003028 480 HLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFA 559 (856)
Q Consensus 480 ~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~ 559 (856)
++++|.+.|+...+.... +...|..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|...|+
T Consensus 89 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544443211 33445555555555555555555555444331 1123333333312223335555555555
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003028 560 EMRRKNWVPDEPVYGLLVDLWGKAGN---VRKAWEWYEAMLQAG-LRPN------VPTCNSLLSAFLRVGQLSDAYHLLQ 629 (856)
Q Consensus 560 ~m~~~g~~pd~~~y~~Li~~~~k~g~---~~~A~~l~~~m~~~g-~~pd------~~t~n~Li~ay~~~g~~e~A~~l~~ 629 (856)
.+.+.. +.+...+..+...+...|+ +++|...|++..+.. -.|+ ...|..+...|...|++++|++.|+
T Consensus 167 ~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 167 KVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555432 1123444444555555554 444555555544320 0122 2355566666666666666666666
Q ss_pred HHHH
Q 003028 630 GMLN 633 (856)
Q Consensus 630 ~M~~ 633 (856)
+.++
T Consensus 246 ~al~ 249 (272)
T 3u4t_A 246 NILA 249 (272)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6665
No 47
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.33 E-value=9.3e-09 Score=126.69 Aligned_cols=260 Identities=12% Similarity=0.164 Sum_probs=177.9
Q ss_pred CCCHHHHHHHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 324 SMDAYQANQVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIH 403 (856)
Q Consensus 324 ~~~~~~~~~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~ 403 (856)
..+...+..++..++.+++|..+|+... -.....+.++. ..+++++|.++.++. -+..+|..+..
T Consensus 1049 ~~d~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAK 1113 (1630)
T 1xi4_A 1049 NYDAPDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAK 1113 (1630)
T ss_pred hccHHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHH
Confidence 3445556666677788888888887652 12222333333 667788888877644 24667788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003028 404 SYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA 483 (856)
Q Consensus 404 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~ 483 (856)
++.+.|++++|.+.|.+. -|...|..++..|.+.|++++|.++|...++.. ++....+.++.+|++.+++++
T Consensus 1114 Aql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1114 AQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAE 1185 (1630)
T ss_pred HHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHH
Confidence 888888888888888553 466777778888888888888888887766643 333344457788888887775
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 484 AHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 484 A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
...+. + .++...|..+...|...|++++|..+|... ..|..+...+++.|++++|.+.++..
T Consensus 1186 le~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-- 1247 (1630)
T 1xi4_A 1186 LEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-- 1247 (1630)
T ss_pred HHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--
Confidence 44332 2 246666777778888888888888888774 36777888888888888888877755
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 564 KNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 564 ~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.+..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+.
T Consensus 1248 ----~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1248 ----NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred ----CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 24466777777777777777777665543 23555666777777777777777777766654
No 48
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=2.2e-09 Score=122.06 Aligned_cols=300 Identities=9% Similarity=-0.035 Sum_probs=209.9
Q ss_pred HHHHhhhChhHHHHHHHHHHHh----CC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CC-CCHHH
Q 003028 332 QVLKQLQDHTVALGFFNWLRRQ----AG---FKHDEHTYTTMVGILGRARQFGAINKLLDQMVRD-----G-CQ-PNVVT 397 (856)
Q Consensus 332 ~vL~~l~~~~~Al~~f~~m~~~----~g---~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~-----g-~~-pd~~t 397 (856)
.+....+++++|++.|+...+. .+ ......+|+.+..+|...|++++|...|++..+. + .. ....+
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence 3445668999999999876431 11 2234678999999999999999999999887642 1 01 23556
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 398 YNRLIHSYGRA--NYLNEALDVFKQMQVVGCEPDRVTYCTLIDI---HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVII 472 (856)
Q Consensus 398 y~~Li~~~~~~--g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~---~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li 472 (856)
|..+..++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|++.|++.++.. +.+..++..+.
T Consensus 139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~ 216 (472)
T 4g1t_A 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHH
Confidence 66666555554 57999999999998764 3345555555444 345678889999999988763 34566666665
Q ss_pred HHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Q 003028 473 NCLGK----AGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGH- 547 (856)
Q Consensus 473 ~~y~k----~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~- 547 (856)
..+.. .+++++|.+++++...... .+...+..+...|...|++++|++.|++..+... -+..++..+...|..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAK 294 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 55544 4678899999998877543 3677899999999999999999999999887532 234555555544432
Q ss_pred ------------------cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--
Q 003028 548 ------------------CGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPT-- 607 (856)
Q Consensus 548 ------------------~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t-- 607 (856)
.+..++|...++...+.. ..+..++..+...|...|++++|...|++..+.. |+...
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~--~~~~~~~ 371 (472)
T 4g1t_A 295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE--LTPVAKQ 371 (472)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC--CCHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC--CCChHHH
Confidence 123567777777777654 3356778899999999999999999999998754 43322
Q ss_pred --HHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003028 608 --CNSLLS-AFLRVGQLSDAYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 608 --~n~Li~-ay~~~g~~e~A~~l~~~M~~~g~~Pd~ 640 (856)
+..+.. .+.+.|++++|+..|++.++ +.|+.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~ 405 (472)
T 4g1t_A 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKS 405 (472)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccc
Confidence 222322 34578999999999999887 44443
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.31 E-value=6.5e-11 Score=123.85 Aligned_cols=246 Identities=10% Similarity=-0.029 Sum_probs=192.0
Q ss_pred hChhHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKH--DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~p--d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 415 (856)
++++.|+..|+.+.+.....+ +..+|..+...+...|++++|...|+++.+.. +.+...|..+...|...|++++|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 677889999999876422222 46688999999999999999999999998863 347889999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 003028 416 DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG 495 (856)
Q Consensus 416 ~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g 495 (856)
+.|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+. .|+......++..+...|++++|...|+......
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 9999998864 456889999999999999999999999999886 3454555556666677899999999998877653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh
Q 003028 496 CIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFE--P-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPV 572 (856)
Q Consensus 496 ~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~--p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 572 (856)
+++...|. ++..+...++.++|+..+.+....... | +...+..+...+...|++++|...|+.+.+.. |+.
T Consensus 175 -~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN-- 248 (275)
T ss_dssp -CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--
T ss_pred -CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--
Confidence 23444444 777788889999999999887643211 1 14678888999999999999999999998754 422
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 003028 573 YGLLVDLWGKAGNVRKAWEWY 593 (856)
Q Consensus 573 y~~Li~~~~k~g~~~~A~~l~ 593 (856)
+.....++...|++++|.+.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 333455677888888887766
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.31 E-value=1.5e-10 Score=118.56 Aligned_cols=162 Identities=13% Similarity=0.123 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIH 440 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~ 440 (856)
..|..+...+...|++++|..+|+++.+.. +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...|
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344445555555555555555555554421 2234445555555555555555555555544432 22344444444444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 441 AKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSAL 520 (856)
Q Consensus 441 ~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 520 (856)
...|++++|.++++++.+.. +.+...+..+...|.+.|++++|.++|+++.+... .+...+..+...|...|++++|+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444444432 22333444444444444444444444444433211 12333333344444444444444
Q ss_pred HHHHHH
Q 003028 521 KLYRDM 526 (856)
Q Consensus 521 ~ll~~M 526 (856)
..|+++
T Consensus 180 ~~~~~~ 185 (243)
T 2q7f_A 180 SQFAAV 185 (243)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.31 E-value=3.3e-10 Score=118.47 Aligned_cols=245 Identities=10% Similarity=0.023 Sum_probs=188.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD--RVTYCTLIDI 439 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd--~~ty~~Ll~~ 439 (856)
.+......+...|++++|..+|++..+.. +.+...|..+..+|...|++++|++.|++..+..-.++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 45567788889999999999999998753 23455788888899999999999999999987431222 2348888999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSA 519 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A 519 (856)
+...|++++|++.|++..+.. +.+..++..+...|...|++++|.+.|++..+.. +.+...|..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998863 3466889999999999999999999999887762 23566777777344555699999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCC------HhhHHHHHHHHHhcCCHHHH
Q 003028 520 LKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY---LDEAEAVFAEMRRKN-WVPD------EPVYGLLVDLWGKAGNVRKA 589 (856)
Q Consensus 520 ~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~---~~~A~~l~~~m~~~g-~~pd------~~~y~~Li~~~~k~g~~~~A 589 (856)
++.|+++.+.. +.+...+..+..++...|+ .++|...+++..+.. -.|+ ..+|..+...|.+.|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999988763 2236677777788888888 888999998887642 1233 25788889999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHH
Q 003028 590 WEWYEAMLQAGLRPNVPTCNSL 611 (856)
Q Consensus 590 ~~l~~~m~~~g~~pd~~t~n~L 611 (856)
...|++..+.. +-+...+..+
T Consensus 241 ~~~~~~al~~~-p~~~~a~~~l 261 (272)
T 3u4t_A 241 DAAWKNILALD-PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHhcC-ccHHHHHHHh
Confidence 99999998753 3344444443
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.30 E-value=2.2e-10 Score=117.37 Aligned_cols=212 Identities=16% Similarity=0.136 Sum_probs=127.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
....|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44556666667777777777777777776543 4456667777777777777777777777776653 335667777777
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDE 553 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~ 553 (856)
.|...|++++|.++|+++.+... .+...|..+...|...|++++|+.+++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777766532 256667777777777777777777777766543 2345566667777777777777
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 554 AEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSL 611 (856)
Q Consensus 554 A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~L 611 (856)
|...++.+.+.. ..+..++..+...|.+.|++++|...|+++.+.. +.+...+..+
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 777777776643 2346667777777777777777777777776542 2334444433
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.28 E-value=9.4e-11 Score=130.84 Aligned_cols=271 Identities=14% Similarity=0.064 Sum_probs=175.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNV----VTYNRLIHSYGRANYLNEALDVFKQMQVV----G-CEPDRVT 432 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~----~ty~~Li~~~~~~g~~~~A~~lf~~m~~~----g-~~pd~~t 432 (856)
.+..+...+...|++++|..+|++..+... .+. ..|..+...|...|++++|++.|++..+. + ......+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344566677788888888888888877531 233 46777778888888888888888877543 1 1223456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHccCC-----------------HHHHHHHHHH
Q 003028 433 YCTLIDIHAKAGFLDVAMDMYKKMQAA----G-LSPDTFTYSVIINCLGKAGH-----------------LQAAHQLFCE 490 (856)
Q Consensus 433 y~~Ll~~~~k~g~~~~A~~l~~~m~~~----g-~~pd~~ty~~Li~~y~k~g~-----------------~~~A~~lf~~ 490 (856)
+..+...|...|++++|...|++..+. + ......++..+...|...|+ +++|.+.|++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 777778888888888888888777553 1 11124466677777888888 7777777776
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHH
Q 003028 491 MVNQ----GCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGF-EPD----KVTYSIVMEVLGHCGYLDEAEAVFAE 560 (856)
Q Consensus 491 m~~~----g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi-~pd----~~ty~~ll~a~~~~g~~~~A~~l~~~ 560 (856)
..+. +..+ ...+|..+...|...|++++|+..|++..+... ..+ ...+..+...+...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5432 1111 234666777778888888888888877654211 011 22566666777777777777777776
Q ss_pred HHHcCCC-----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 561 MRRKNWV-----PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA----GL-RPNVPTCNSLLSAFLRVGQLSDAYHLLQG 630 (856)
Q Consensus 561 m~~~g~~-----pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~----g~-~pd~~t~n~Li~ay~~~g~~e~A~~l~~~ 630 (856)
..+.... ....++..+...|...|++++|..+|++..+. +. .....+|..+...|...|++++|...|++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6543110 11455666777777777777777777766542 10 01134566677777777777777777777
Q ss_pred HHH
Q 003028 631 MLN 633 (856)
Q Consensus 631 M~~ 633 (856)
.++
T Consensus 369 al~ 371 (411)
T 4a1s_A 369 HLQ 371 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.27 E-value=2.3e-10 Score=126.69 Aligned_cols=275 Identities=16% Similarity=0.094 Sum_probs=192.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-
Q 003028 358 HDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN----VVTYNRLIHSYGRANYLNEALDVFKQMQVV----GCEP- 428 (856)
Q Consensus 358 pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~----g~~p- 428 (856)
.....+..+...+...|++++|..+|++..+.. +.+ ...|..+...|...|++++|...|++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 455667777888889999999999999888763 223 356778888889999999999998876542 2112
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC--------------------HHH
Q 003028 429 DRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGL-SPD----TFTYSVIINCLGKAGH--------------------LQA 483 (856)
Q Consensus 429 d~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~-~pd----~~ty~~Li~~y~k~g~--------------------~~~ 483 (856)
...++..+...|...|++++|...+++..+... ..+ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245677788888889999999988888765310 012 3467777888888888 888
Q ss_pred HHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHH
Q 003028 484 AHQLFCEMVNQ----GCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGF-EPD----KVTYSIVMEVLGHCGYLDE 553 (856)
Q Consensus 484 A~~lf~~m~~~----g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi-~pd----~~ty~~ll~a~~~~g~~~~ 553 (856)
|.+.+++..+. +..+ ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 88888765432 1111 234677778888888888888888887754310 112 2366777778888888888
Q ss_pred HHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHH
Q 003028 554 AEAVFAEMRRKNWV-PD----EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGL-RPN----VPTCNSLLSAFLRVGQLSD 623 (856)
Q Consensus 554 A~~l~~~m~~~g~~-pd----~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~-~pd----~~t~n~Li~ay~~~g~~e~ 623 (856)
|...+++..+.... .+ ..++..+...|...|++++|...|++..+... ..+ ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 88888877643110 11 45677777888888888888888887764210 112 4567778888888888888
Q ss_pred HHHHHHHHHH
Q 003028 624 AYHLLQGMLN 633 (856)
Q Consensus 624 A~~l~~~M~~ 633 (856)
|...|++.++
T Consensus 326 A~~~~~~al~ 335 (406)
T 3sf4_A 326 AMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887664
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.26 E-value=1.3e-09 Score=121.49 Aligned_cols=249 Identities=9% Similarity=0.047 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANY-LNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~-~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
...|..+..++.+.|++++|...|+...+.. +-+...|+.+...+...|+ +++|+..|++..+.. +-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3467778888889999999999999998753 3467888999999999996 999999999998865 457788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK-ARNYQ 517 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~-~g~~~ 517 (856)
++...|++++|+..|+++++.. +-+...|..+..++.+.|++++|...|+++.+.... +...|+.+..+|.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998874 347888888888999999999999999988876443 67888888888888 56546
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC------
Q 003028 518 SA-----LKLYRDMQNAGFEPDKVTYSIVMEVLGHCG--YLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAG------ 584 (856)
Q Consensus 518 ~A-----~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g--~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g------ 584 (856)
+| ++.|++..... +-+...|..+...+...| ++++|.+.+.++ + ....+...+..+.++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 47777776643 223557777777777776 577787777776 3 22345667777777777763
Q ss_pred ---CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Q 003028 585 ---NVRKAWEWYEAM-LQAGLRPNVPTCNSLLSAFL 616 (856)
Q Consensus 585 ---~~~~A~~l~~~m-~~~g~~pd~~t~n~Li~ay~ 616 (856)
.+++|.++|+++ .+.. +-....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 247777787777 4421 223445555555444
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.26 E-value=2.5e-10 Score=122.13 Aligned_cols=271 Identities=16% Similarity=0.098 Sum_probs=185.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPN----VVTYNRLIHSYGRANYLNEALDVFKQMQVV----GCE-PDRVT 432 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~----g~~-pd~~t 432 (856)
.+......+...|++++|..+|+++.+.. +.+ ...|..+...|...|++++|.+.|++.... +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455667778888888888888887753 123 356777888888888888888888876432 211 12456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC--------------------HHHHHHH
Q 003028 433 YCTLIDIHAKAGFLDVAMDMYKKMQAAGL-SPD----TFTYSVIINCLGKAGH--------------------LQAAHQL 487 (856)
Q Consensus 433 y~~Ll~~~~k~g~~~~A~~l~~~m~~~g~-~pd----~~ty~~Li~~y~k~g~--------------------~~~A~~l 487 (856)
+..+...|...|++++|...+++..+... ..+ ..++..+...|...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77778888888888888888887755310 112 3467777788888888 8888888
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHH
Q 003028 488 FCEMVNQ----GCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGF-EPD----KVTYSIVMEVLGHCGYLDEAEAV 557 (856)
Q Consensus 488 f~~m~~~----g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi-~pd----~~ty~~ll~a~~~~g~~~~A~~l 557 (856)
+++.... +..+ ....+..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8765432 1111 234677777888888888888888887654210 011 23666777778888888888888
Q ss_pred HHHHHHcCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 558 FAEMRRKNWV-PD----EPVYGLLVDLWGKAGNVRKAWEWYEAMLQA----GL-RPNVPTCNSLLSAFLRVGQLSDAYHL 627 (856)
Q Consensus 558 ~~~m~~~g~~-pd----~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~----g~-~pd~~t~n~Li~ay~~~g~~e~A~~l 627 (856)
+++..+.... .+ ..++..+...|...|++++|...+++..+. +. .....++..+...|...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8877643111 11 456777778888888888888888877642 10 01134677788888888888888888
Q ss_pred HHHHHH
Q 003028 628 LQGMLN 633 (856)
Q Consensus 628 ~~~M~~ 633 (856)
|++.++
T Consensus 326 ~~~a~~ 331 (338)
T 3ro2_A 326 AEKHLE 331 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888876
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.23 E-value=1.4e-09 Score=121.12 Aligned_cols=240 Identities=10% Similarity=0.082 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF-LDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~-~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
...|+.+...+.+.|++++|++.|++..+.. +-+...|+.+..++...|+ +++|+..|++.++.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567778888899999999999999998875 5568889999999999997 999999999999874 347889999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChH
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGH-CGYLD 552 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~-~g~~~ 552 (856)
+|.+.|++++|...|+++.+.... +...|..+..++.+.|++++|+..|+++.+... -+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999987443 788999999999999999999999999998653 357788888888988 56658
Q ss_pred HH-----HHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC------
Q 003028 553 EA-----EAVFAEMRRKNWVPDEPVYGLLVDLWGKAG--NVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVG------ 619 (856)
Q Consensus 553 ~A-----~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g--~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g------ 619 (856)
+| ...++...+.. .-+...|+.+...|.+.| ++++|.+.+.++ +. .+.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 87 47888887754 236778888888898888 689999999988 32 3556788999999999874
Q ss_pred ---CHHHHHHHHHHH-HHCCCCCCHHHH
Q 003028 620 ---QLSDAYHLLQGM-LNLGLKPSLQTY 643 (856)
Q Consensus 620 ---~~e~A~~l~~~M-~~~g~~Pd~~ty 643 (856)
.+++|+++|+++ .+ +.|...-|
T Consensus 330 ~~~~~~~A~~~~~~l~~~--~DP~r~~~ 355 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--KDTIRKEY 355 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCGGGHHH
T ss_pred hHHHHHHHHHHHHHHHHH--hCchhHHH
Confidence 358999999998 65 56665443
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.23 E-value=2.8e-10 Score=126.98 Aligned_cols=274 Identities=14% Similarity=0.030 Sum_probs=209.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C-CCCCHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDR----VTYCTLIDIHAKAGFLDVAMDMYKKMQAA----G-LSPDTFT 467 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~----~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~----g-~~pd~~t 467 (856)
.+..+...+...|++++|+.+|+++.+.. +.+. ..|..+...|...|++++|...|++..+. + ......+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34456678899999999999999998864 2233 47888999999999999999999988653 1 1223567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 003028 468 YSVIINCLGKAGHLQAAHQLFCEMVNQ----GC-IPNLVTYNIMIALQAKARN-----------------YQSALKLYRD 525 (856)
Q Consensus 468 y~~Li~~y~k~g~~~~A~~lf~~m~~~----g~-~pd~~ty~~Li~~~~~~g~-----------------~~~A~~ll~~ 525 (856)
+..+...|...|++++|...|++..+. +. .....+|..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788889999999999999999987653 11 1134578888899999999 9999999987
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003028 526 MQNA----GFEP-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWV-PD----EPVYGLLVDLWGKAGNVRKAWEWYEA 595 (856)
Q Consensus 526 M~~~----gi~p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~y~~Li~~~~k~g~~~~A~~l~~~ 595 (856)
..+. +..+ ...++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|...|++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 2112 2347778888899999999999999988763211 12 23788899999999999999999998
Q ss_pred HHHcCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcchHHHHHHH
Q 003028 596 MLQAGL-RP----NVPTCNSLLSAFLRVGQLSDAYHLLQGMLNL----GLKP-SLQTYTLLLSCCTEARSPYDMGFCHEL 665 (856)
Q Consensus 596 m~~~g~-~p----d~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~----g~~P-d~~ty~~Ll~a~~~~g~~~~a~~l~~~ 665 (856)
..+... .. ...++..+...|...|++++|...|++.++. +..+ ...++..+...+...|++++|...++.
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 875310 01 2567889999999999999999999998762 1111 134677778889999999999998888
Q ss_pred HHHcCC
Q 003028 666 MAVSGH 671 (856)
Q Consensus 666 m~~~g~ 671 (856)
..+...
T Consensus 369 al~~~~ 374 (411)
T 4a1s_A 369 HLQLAX 374 (411)
T ss_dssp HHHHCC
T ss_pred HHHHHh
Confidence 776654
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.20 E-value=1.3e-08 Score=109.63 Aligned_cols=217 Identities=12% Similarity=0.119 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003028 412 NEALDVFKQMQVVGCEPDRVTYCTLIDIHA-------KAGFL-------DVAMDMYKKMQAAGLSPDTFTYSVIINCLGK 477 (856)
Q Consensus 412 ~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~-------k~g~~-------~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k 477 (856)
++|..+|++..... +-+...|..+...+. +.|++ ++|..+|++.++.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666666665542 345556666555554 34664 7888888887763123355677788888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHHH
Q 003028 478 AGHLQAAHQLFCEMVNQGCIPN-LV-TYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLG-HCGYLDEA 554 (856)
Q Consensus 478 ~g~~~~A~~lf~~m~~~g~~pd-~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~-~~g~~~~A 554 (856)
.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+... .+...|........ ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888764 333 33 788888888888888888888888876532 23334433332222 36889999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 555 EAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG-LRP--NVPTCNSLLSAFLRVGQLSDAYHLLQGM 631 (856)
Q Consensus 555 ~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g-~~p--d~~t~n~Li~ay~~~g~~e~A~~l~~~M 631 (856)
..+|+...+.. .-+...+..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998887753 2367788888888899999999999999988752 344 4678888888888999999999999988
Q ss_pred HH
Q 003028 632 LN 633 (856)
Q Consensus 632 ~~ 633 (856)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.20 E-value=1e-09 Score=121.48 Aligned_cols=275 Identities=12% Similarity=0.054 Sum_probs=208.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC
Q 003028 392 QPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD----RVTYCTLIDIHAKAGFLDVAMDMYKKMQAA----GLSP 463 (856)
Q Consensus 392 ~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~----g~~p 463 (856)
......+..+...+...|++++|..+|++..+.. +.+ ...|..+...|...|++++|...+++.... +..+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3456677778889999999999999999998864 223 357888899999999999999999987543 2111
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HH
Q 003028 464 -DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC-IPN----LVTYNIMIALQAKARN--------------------YQ 517 (856)
Q Consensus 464 -d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~-~pd----~~ty~~Li~~~~~~g~--------------------~~ 517 (856)
...++..+...|...|++++|...|++..+... ..+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 255777888999999999999999998765310 012 4478888899999999 99
Q ss_pred HHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCCHH
Q 003028 518 SALKLYRDMQNA----GFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNW-VPD----EPVYGLLVDLWGKAGNVR 587 (856)
Q Consensus 518 ~A~~ll~~M~~~----gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~y~~Li~~~~k~g~~~ 587 (856)
+|++.+.+.... +..+. ..++..+...+...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999876542 21122 34677888889999999999999998875311 112 337888899999999999
Q ss_pred HHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCcc
Q 003028 588 KAWEWYEAMLQAGL-RPN----VPTCNSLLSAFLRVGQLSDAYHLLQGMLNL----GLKPS-LQTYTLLLSCCTEARSPY 657 (856)
Q Consensus 588 ~A~~l~~~m~~~g~-~pd----~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~----g~~Pd-~~ty~~Ll~a~~~~g~~~ 657 (856)
+|...+++..+... ..+ ..++..+...|...|++++|...|++..+. +-.+. ..++..+...+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 99999998874210 112 567889999999999999999999998752 11111 456777777888999998
Q ss_pred hHHHHHHHHH
Q 003028 658 DMGFCHELMA 667 (856)
Q Consensus 658 ~a~~l~~~m~ 667 (856)
+|...++...
T Consensus 325 ~A~~~~~~al 334 (406)
T 3sf4_A 325 QAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887765544
No 61
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=1.6e-10 Score=122.87 Aligned_cols=245 Identities=13% Similarity=0.099 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRD-------GCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVV------G- 425 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~-------g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~------g- 425 (856)
..++..+...+...|++++|..+|+++.+. ..+.....+..+...|...|++++|.++|++.... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777777888888888888888777652 11223456677777777777777777777776543 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----
Q 003028 426 CEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA------GL-SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ---- 494 (856)
Q Consensus 426 ~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~------g~-~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~---- 494 (856)
......++..+...|...|++++|...|+++.+. +. +....++..+...|...|++++|.++|++..+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1223455666666677777777777777666543 11 112344555556666666666666666665542
Q ss_pred --CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003028 495 --GCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAG-------FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK 564 (856)
Q Consensus 495 --g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g-------i~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~ 564 (856)
+..| ...++..+...|...|++++|++.|+++.+.. ..+........
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~----------------------- 243 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH----------------------- 243 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH-----------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH-----------------------
Confidence 1111 22345555556666666666666666554420 00100000000
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 565 NWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 565 g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
...+..+...+...+.+.+|...++..... .+.+..+|..+...|.+.|++++|.++|++.++
T Consensus 244 -----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 244 -----AEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----HHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111112222223334444444455544432 122445677777777777777777777777664
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.18 E-value=6.8e-10 Score=118.71 Aligned_cols=272 Identities=13% Similarity=0.043 Sum_probs=205.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD----RVTYCTLIDIHAKAGFLDVAMDMYKKMQAA----GLS-PDTFT 467 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~----g~~-pd~~t 467 (856)
.+......+...|++++|..+|+++.+.. +.+ ...|..+...|...|++++|.+.+++..+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44556678889999999999999998864 223 367888999999999999999999987643 111 22567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHH
Q 003028 468 YSVIINCLGKAGHLQAAHQLFCEMVNQGC-IPN----LVTYNIMIALQAKARN--------------------YQSALKL 522 (856)
Q Consensus 468 y~~Li~~y~k~g~~~~A~~lf~~m~~~g~-~pd----~~ty~~Li~~~~~~g~--------------------~~~A~~l 522 (856)
+..+...|...|++++|...|++..+... ..+ ..++..+...|...|+ +++|++.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 78888999999999999999998764310 112 3478888899999999 9999999
Q ss_pred HHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC----CHhhHHHHHHHHHhcCCHHHHHHH
Q 003028 523 YRDMQNA----GFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNW-VP----DEPVYGLLVDLWGKAGNVRKAWEW 592 (856)
Q Consensus 523 l~~M~~~----gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~-~p----d~~~y~~Li~~~~k~g~~~~A~~l 592 (856)
+++.... +..+. ...+..+...+...|++++|...+++..+... .. ...++..+...|...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9876532 21121 34677788889999999999999998875311 11 133788888999999999999999
Q ss_pred HHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcchHHHH
Q 003028 593 YEAMLQAGL-RPN----VPTCNSLLSAFLRVGQLSDAYHLLQGMLNL----GLKP-SLQTYTLLLSCCTEARSPYDMGFC 662 (856)
Q Consensus 593 ~~~m~~~g~-~pd----~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~----g~~P-d~~ty~~Ll~a~~~~g~~~~a~~l 662 (856)
+++..+... ..+ ..++..+...|...|++++|...+++.++. +-.+ ...++..+...+...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 998774210 112 567888999999999999999999988752 1111 134677778889999999999888
Q ss_pred HHHHHHc
Q 003028 663 HELMAVS 669 (856)
Q Consensus 663 ~~~m~~~ 669 (856)
++...+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8777654
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.14 E-value=3.5e-09 Score=117.49 Aligned_cols=291 Identities=10% Similarity=0.010 Sum_probs=192.2
Q ss_pred hChhHHHHHHHHHHHhC-CCCCC--HHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHcCCCCCHHH----
Q 003028 338 QDHTVALGFFNWLRRQA-GFKHD--EHTYTTMVGI--LGRARQFGAIN-----------KLLDQMVRDGCQPNVVT---- 397 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~-g~~pd--~~~y~~Li~~--~~k~g~~~~A~-----------~lf~~m~~~g~~pd~~t---- 397 (856)
++.+.|..+++.+.... ....| ...|-.++.. ..-.+.++.+. ++++.+... +.+...
T Consensus 26 ~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~~l~~ 103 (383)
T 3ulq_A 26 FSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTGLLEY 103 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchhHHHH
Confidence 57778888888876532 22233 3333333322 11223344444 666666542 111111
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CC----CC
Q 003028 398 --YNRLIHSYGRANYLNEALDVFKQMQVV----GCEP-DRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAG--LS----PD 464 (856)
Q Consensus 398 --y~~Li~~~~~~g~~~~A~~lf~~m~~~----g~~p-d~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g--~~----pd 464 (856)
|......+...|++++|++.|++.... +-.+ ...+|..+...|...|++++|...+++..+.- .. ..
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 122456677889999999999988753 1111 34678888889999999999999998876531 11 12
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCC
Q 003028 465 TFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNA----GF-EPD 534 (856)
Q Consensus 465 ~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~----gi-~pd 534 (856)
..+++.+...|...|++++|...|++..+. +..+ ...+|..+...|...|++++|++.|++..+. +. +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 356777888899999999999998877643 1111 1246778888899999999999999887652 33 223
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC-CHH
Q 003028 535 KVTYSIVMEVLGHCGYLDEAEAVFAEMRRK----NWVPDEPVYGLLVDLWGKAGN---VRKAWEWYEAMLQAGLRP-NVP 606 (856)
Q Consensus 535 ~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~----g~~pd~~~y~~Li~~~~k~g~---~~~A~~l~~~m~~~g~~p-d~~ 606 (856)
..++..+...+...|++++|...+++..+. +.......+..+...|...|+ +++|..++++.. ..+ ...
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~ 340 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLED 340 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHH
Confidence 557778888888999999999988887653 111122335667777888888 667777766652 222 234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 607 TCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 607 t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.+..+...|...|++++|...|++..+
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677788888899999999998888765
No 64
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.14 E-value=3.6e-10 Score=120.15 Aligned_cols=235 Identities=13% Similarity=0.082 Sum_probs=154.8
Q ss_pred HhhhChhHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHH
Q 003028 335 KQLQDHTVALGFFNWLRRQA------GFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRD------GC-QPNVVTYNRL 401 (856)
Q Consensus 335 ~~l~~~~~Al~~f~~m~~~~------g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~------g~-~pd~~ty~~L 401 (856)
...++++.|+.+|+.+.+.. ........+..+..+|...|++++|..+|++..+. +- +.....|..+
T Consensus 38 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 117 (311)
T 3nf1_A 38 ASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNL 117 (311)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34589999999999987521 12234567888999999999999999999998764 11 2245678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 003028 402 IHSYGRANYLNEALDVFKQMQVV------GC-EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA------GLSP-DTFT 467 (856)
Q Consensus 402 i~~~~~~g~~~~A~~lf~~m~~~------g~-~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~------g~~p-d~~t 467 (856)
...|...|++++|.++|+++.+. +. ......+..+...|...|++++|.++|+++.+. +..| ...+
T Consensus 118 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (311)
T 3nf1_A 118 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 197 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999998764 22 234567888899999999999999999999774 2122 3457
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003028 468 YSVIINCLGKAGHLQAAHQLFCEMVNQG-------CIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSI 540 (856)
Q Consensus 468 y~~Li~~y~k~g~~~~A~~lf~~m~~~g-------~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ 540 (856)
+..+...|...|++++|.+.|+++.+.. ..+....... ....+..
T Consensus 198 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~ 249 (311)
T 3nf1_A 198 KNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM----------------------------HAEEREE 249 (311)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH----------------------------HHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH----------------------------HHHHHHH
Confidence 8888999999999999999999988631 0000000000 0111222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 541 VMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ 598 (856)
Q Consensus 541 ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~ 598 (856)
+...+...+.+.++...+....... .....++..+..+|.+.|++++|..+|++..+
T Consensus 250 ~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 250 CKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2333334455555555555554322 22445666777777777777777777776654
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.11 E-value=1.3e-08 Score=99.86 Aligned_cols=171 Identities=15% Similarity=0.048 Sum_probs=120.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 464 DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVME 543 (856)
Q Consensus 464 d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~ 543 (856)
+..+|..|-..|.+.|++++|.+.|++..+.... +...|..+...|.+.|++++|+..+........ -+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 4566677777777777777777777776655322 566677777777777777777777777665432 23445556666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 544 VLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSD 623 (856)
Q Consensus 544 a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~ 623 (856)
.+...++++.+...+....+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6777777777777777776643 3356677777788888888888888888877653 4467778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCH
Q 003028 624 AYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 624 A~~l~~~M~~~g~~Pd~ 640 (856)
|++.|++.++ +.|+.
T Consensus 160 A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHHH--TTHHH
T ss_pred HHHHHHHHHh--CCccC
Confidence 8888888876 34544
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.10 E-value=5.6e-08 Score=104.54 Aligned_cols=218 Identities=9% Similarity=0.098 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 377 GAINKLLDQMVRDGCQPNVVTYNRLIHSYGR-------ANYL-------NEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 377 ~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~-------~g~~-------~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
++|..+|++.... .+.+...|..+...+.. .|++ ++|..+|++..+.-.+-+...|..+...+.+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5777788877764 24467778777777653 4765 8888888888762113355678888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLSPD-TF-TYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQA-KARNYQSA 519 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~pd-~~-ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~-~~g~~~~A 519 (856)
.|++++|.++|++.++. .|+ .. +|..+...+.+.|++++|.++|++..+... .+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888874 343 33 788888888888888999888888887532 24445544433322 26889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 520 LKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN-WVP--DEPVYGLLVDLWGKAGNVRKAWEWYEAM 596 (856)
Q Consensus 520 ~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g-~~p--d~~~y~~Li~~~~k~g~~~~A~~l~~~m 596 (856)
..+|++..+.. +-+...|..++..+...|+.++|..+|+...... +.| ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998887652 2356677888888888899999999999888853 343 4567888888888889999999998888
Q ss_pred HHc
Q 003028 597 LQA 599 (856)
Q Consensus 597 ~~~ 599 (856)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.09 E-value=2.3e-08 Score=98.17 Aligned_cols=167 Identities=13% Similarity=0.123 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
+...|..+...|.+.|++++|.+.|++..+.. +-+...|..+..+|.+.|++++|+..+.+..... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45677777888888888888888888777653 2366677777777888888888888877776654 445566666677
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQS 518 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 518 (856)
.+...++++.|.+.+.+..... +.+...+..+..+|.+.|++++|.+.|++..+... .+..+|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 7777777777777777776652 34566777777777777777777777777766532 256677777777777777777
Q ss_pred HHHHHHHHHHc
Q 003028 519 ALKLYRDMQNA 529 (856)
Q Consensus 519 A~~ll~~M~~~ 529 (856)
|++.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777776653
No 68
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.07 E-value=4.7e-09 Score=119.78 Aligned_cols=340 Identities=14% Similarity=0.034 Sum_probs=204.3
Q ss_pred HHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003028 333 VLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQF---GAINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN 409 (856)
Q Consensus 333 vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~---~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g 409 (856)
+....++++.|++.|....+. | +...+..|..+|...|+. ++|...|+...+. +...+..|...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 334457888999999888754 3 233566677777777877 8899998888753 5555666666455554
Q ss_pred -----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 003028 410 -----YLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLD---VAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHL 481 (856)
Q Consensus 410 -----~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~---~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~ 481 (856)
++++|+++|++..+.|. + ..+..|...|...+..+ ++.+.+......| +...+..|...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 78899999999888663 2 36777777777766544 3445555555444 345666777777777744
Q ss_pred ----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CC
Q 003028 482 ----QAAHQLFCEMVNQGCIPNLVTYNIMIALQAKAR---NYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHC----GY 550 (856)
Q Consensus 482 ----~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g---~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~----g~ 550 (856)
+++..+++.... .+...+..|...|...| +.++|++.|++..+.|. ++...+..+...|... ++
T Consensus 158 ~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 158 DQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp GGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCC
T ss_pred ccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCC
Confidence 444444444333 24447888888888888 88899999998888773 4444445566666544 68
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----CHH
Q 003028 551 LDEAEAVFAEMRRKNWVPDEPVYGLLVDL-W--GKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVG-----QLS 622 (856)
Q Consensus 551 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~-~--~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g-----~~e 622 (856)
.++|...|+... .+ +...+..|... | ...+++++|..+|++..+.| +...+..|...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 899999998877 33 45566666666 4 46789999999999988865 7778888888887 55 899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHH
Q 003028 623 DAYHLLQGMLNLGLKPSLQTYTLLLSCCTE----ARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFL 698 (856)
Q Consensus 623 ~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~----~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~ 698 (856)
+|+..|++.. .| +...+..|-..|.. ..+.++|...+++..+
T Consensus 305 ~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~------------------------------ 350 (452)
T 3e4b_A 305 AAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR------------------------------ 350 (452)
T ss_dssp HHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT------------------------------
T ss_pred HHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh------------------------------
Confidence 9999988876 33 44444444444433 1133333333333322
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCC
Q 003028 699 EMMHSEDRESKRGLVDAVVDFLHK----SGLKEEAGSVWEVAAQKNV 741 (856)
Q Consensus 699 ~~~~~~~~~~~~~~~~aLi~~y~k----~G~~eeA~~lf~~m~~~~~ 741 (856)
.+. ......|..+|.. ..+.++|...|+...+.|.
T Consensus 351 -----~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 351 -----NGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp -----TTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred -----hCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 221 1234456666653 3467888888888877764
No 69
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.07 E-value=6.3e-08 Score=106.59 Aligned_cols=271 Identities=13% Similarity=0.038 Sum_probs=178.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVV----TYNRLIHSYGRANYLNEALDVFKQMQVVGC-EPD----RVTY 433 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~----ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd----~~ty 433 (856)
+..+...+...|++++|...+++.....-..+.. .++.+...|...|++++|.+.+++.....- ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344556667888888888888877643222222 456666778888889988888887754210 111 2335
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC----CCHHH
Q 003028 434 CTLIDIHAKAGFLDVAMDMYKKMQAA----GLS--P-DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCI----PNLVT 502 (856)
Q Consensus 434 ~~Ll~~~~k~g~~~~A~~l~~~m~~~----g~~--p-d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~----pd~~t 502 (856)
..+...+...|++++|...+++..+. +.. | ...++..+...|...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777788889999998888887653 221 2 2345666777888889999999888887654211 12356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHhhH
Q 003028 503 YNIMIALQAKARNYQSALKLYRDMQNAGFEPD--KVTYS----IVMEVLGHCGYLDEAEAVFAEMRRKNWVP---DEPVY 573 (856)
Q Consensus 503 y~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd--~~ty~----~ll~a~~~~g~~~~A~~l~~~m~~~g~~p---d~~~y 573 (856)
|..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+.........+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788888889999999998888765321111 11111 22344668889999988888776532211 12245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 574 GLLVDLWGKAGNVRKAWEWYEAMLQA----GLRPNV-PTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 574 ~~Li~~~~k~g~~~~A~~l~~~m~~~----g~~pd~-~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
..+...+...|++++|...++..... +..++. ..+..+..+|...|+.++|...|++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66777888889998888888877542 211222 2566677788888888888888887764
No 70
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.06 E-value=1.1e-08 Score=116.58 Aligned_cols=304 Identities=14% Similarity=0.106 Sum_probs=203.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH---
Q 003028 341 TVALGFFNWLRRQAGFKHDEHTYTTMVGILGRAR-----QFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLN--- 412 (856)
Q Consensus 341 ~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g-----~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~--- 412 (856)
++|+..|...... +...+..|..++...+ ++++|...|+...+.|. ...+..|...|...+..+
T Consensus 55 ~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~ 126 (452)
T 3e4b_A 55 KQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNV 126 (452)
T ss_dssp ---------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTC
T ss_pred HHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCH
Confidence 7888888877642 4556777777565555 78899999999998763 236777777787776544
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHH
Q 003028 413 EALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG---HLQAAHQLFC 489 (856)
Q Consensus 413 ~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g---~~~~A~~lf~ 489 (856)
++.+.+.+....| +...+..|...|...+.++++......+.+.-...+...+..|..+|.+.| +.++|.+.|+
T Consensus 127 ~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~ 203 (452)
T 3e4b_A 127 NAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQME 203 (452)
T ss_dssp CHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 4555555555544 456777788888888865555554333333222223448888999999999 9999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHH
Q 003028 490 EMVNQGCIPNLVTYNIMIALQAKA----RNYQSALKLYRDMQNAGFEPDKVTYSIVMEV-L--GHCGYLDEAEAVFAEMR 562 (856)
Q Consensus 490 ~m~~~g~~pd~~ty~~Li~~~~~~----g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a-~--~~~g~~~~A~~l~~~m~ 562 (856)
...+.|.. +...+..|...|... +++++|+..|++.. .| +...+..+-.. + ...++.++|...|+...
T Consensus 204 ~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 204 AGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 99988744 566556677777655 79999999999987 33 34455556555 3 46899999999999999
Q ss_pred HcCCCCCHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 003028 563 RKNWVPDEPVYGLLVDLWGKAG-----NVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR----VGQLSDAYHLLQGMLN 633 (856)
Q Consensus 563 ~~g~~pd~~~y~~Li~~~~k~g-----~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~----~g~~e~A~~l~~~M~~ 633 (856)
+.| +...+..|-.+|. .| ++++|..+|++.. . -+...+..|...|.. ..++++|+..|++..+
T Consensus 279 ~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 279 AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 877 6778888888887 55 9999999999887 3 477888888888876 3489999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHcCC
Q 003028 634 LGLKPSLQTYTLLLSCCTE----ARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 634 ~g~~Pd~~ty~~Ll~a~~~----~g~~~~a~~l~~~m~~~g~ 671 (856)
.|. |+ ....|-..|.. ..+..+|...++...+.|.
T Consensus 351 ~g~-~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 351 NGQ-NS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TTC-TT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred hCh-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 763 33 23333333332 2345555555555555443
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.06 E-value=7.5e-09 Score=114.80 Aligned_cols=295 Identities=11% Similarity=0.012 Sum_probs=206.1
Q ss_pred HhcCCHHHHHHHHHHHHHc--CCC--CCHHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHcCCCCC----
Q 003028 371 GRARQFGAINKLLDQMVRD--GCQ--PNVVTYNRLIHS--YGRANYLNEAL-----------DVFKQMQVVGCEPD---- 429 (856)
Q Consensus 371 ~k~g~~~~A~~lf~~m~~~--g~~--pd~~ty~~Li~~--~~~~g~~~~A~-----------~lf~~m~~~g~~pd---- 429 (856)
.+.+++++|..+++++.+. ... ++...|-.++.. ..-.+.++.+. +.++.+.......+
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 4689999999999998653 222 233444444432 22233444444 66666654211111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CC-----
Q 003028 430 RVTYCTLIDIHAKAGFLDVAMDMYKKMQAA----GLSP-DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC-IP----- 498 (856)
Q Consensus 430 ~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~----g~~p-d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~-~p----- 498 (856)
...+......+...|++++|...|++..+. +-.+ ...++..+...|...|++++|...+++..+.-. .+
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 011223556678899999999999999764 1111 246788889999999999999999998764310 11
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CC
Q 003028 499 NLVTYNIMIALQAKARNYQSALKLYRDMQNAGF-EPD----KVTYSIVMEVLGHCGYLDEAEAVFAEMRRK----NW-VP 568 (856)
Q Consensus 499 d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi-~pd----~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~----g~-~p 568 (856)
...+++.+...|...|++++|++.|++..+... .++ ..++..+...|...|++++|...+++..+. +. ..
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 245788889999999999999999998764311 112 247788889999999999999999998862 22 33
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCH-
Q 003028 569 DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA----GLRPNVPTCNSLLSAFLRVGQ---LSDAYHLLQGMLNLGLKPSL- 640 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~----g~~pd~~t~n~Li~ay~~~g~---~e~A~~l~~~M~~~g~~Pd~- 640 (856)
...++..+...|.+.|++++|...+++..+. +-+.....+..+...|...|+ +++|+.++++. +..|+.
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~ 339 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLE 339 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHH
Confidence 4677889999999999999999999987742 111123346778888888998 77888887765 334443
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003028 641 QTYTLLLSCCTEARSPYDMGFCHELMAV 668 (856)
Q Consensus 641 ~ty~~Ll~a~~~~g~~~~a~~l~~~m~~ 668 (856)
..+..+-..+...|++++|...++...+
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4566677789999999999888776654
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.04 E-value=7.5e-09 Score=118.86 Aligned_cols=223 Identities=9% Similarity=-0.017 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003028 376 FGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYL-NEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYK 454 (856)
Q Consensus 376 ~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~-~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~ 454 (856)
++++...+++.... .+.+...|..+...|...|++ ++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555554432 123556666666666666666 77777666666543 3345566666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 455 KMQAAGLSPDTFTYSVIINCLGKA---------GHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRD 525 (856)
Q Consensus 455 ~m~~~g~~pd~~ty~~Li~~y~k~---------g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 525 (856)
+.++. .|+...+..+...|... |++++|.+.|++..+... -+...|..+..+|...
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~------------ 226 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSL------------ 226 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH------------
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHH------------
Confidence 66654 34555556666666665 555555555555554321 1344454444444444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003028 526 MQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNW--VPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRP 603 (856)
Q Consensus 526 M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~--~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~p 603 (856)
....| ...|++++|...|+...+... .-+...|..+..+|...|++++|...|++..+.. +.
T Consensus 227 ~~~~~---------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~ 290 (474)
T 4abn_A 227 YFNTG---------------QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PA 290 (474)
T ss_dssp HHHTT---------------CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhc---------------cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 00000 000445555555555554321 0255566666666666777777777776666542 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 604 NVPTCNSLLSAFLRVGQLSDAYHLLQGM 631 (856)
Q Consensus 604 d~~t~n~Li~ay~~~g~~e~A~~l~~~M 631 (856)
+...|..+...+...|++++|++.+.++
T Consensus 291 ~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 291 WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4556677777777777777777666554
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.04 E-value=6.7e-09 Score=119.25 Aligned_cols=213 Identities=10% Similarity=0.003 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHL-QAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYR 524 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~-~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 524 (856)
++++++.+++.... .+.+...+..+...|...|++ ++|.+.|++..+... -+...|..+...|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445555544433 223555666666666666666 666666666655422 245667777777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc--------CCHH
Q 003028 525 DMQNAGFEPDKVTYSIVMEVLGHC---------GYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKA--------GNVR 587 (856)
Q Consensus 525 ~M~~~gi~pd~~ty~~ll~a~~~~---------g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~--------g~~~ 587 (856)
+..+. .|+...+..+...+... |++++|...|++..+.. .-+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 77654 35556666677777777 88888888888877754 33577788888888888 9999
Q ss_pred HHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcchHHHHH
Q 003028 588 KAWEWYEAMLQAGLR---PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS-LQTYTLLLSCCTEARSPYDMGFCH 663 (856)
Q Consensus 588 ~A~~l~~~m~~~g~~---pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd-~~ty~~Ll~a~~~~g~~~~a~~l~ 663 (856)
+|...|++..+.. + -+...|..+...|...|++++|++.|++.++. .|+ ...+..+...+...|+.++|...+
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999753 2 38899999999999999999999999999984 444 456777777888888888887765
Q ss_pred HHH
Q 003028 664 ELM 666 (856)
Q Consensus 664 ~~m 666 (856)
..+
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.99 E-value=4.1e-08 Score=95.20 Aligned_cols=163 Identities=12% Similarity=0.037 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
.|..+...+...|++++|...|+++.+.. +.+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45556666666777777777776665432 2355666666666667777777777776666543 345556666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003028 442 KAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALK 521 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 521 (856)
..|++++|.+.++++.+.. +.+...+..+...|...|++++|.++|++..+.. +.+...|..+...|...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666666542 3355556666666666666666666666665542 1245556666666666666666666
Q ss_pred HHHHHHH
Q 003028 522 LYRDMQN 528 (856)
Q Consensus 522 ll~~M~~ 528 (856)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.96 E-value=2.2e-07 Score=102.12 Aligned_cols=270 Identities=14% Similarity=0.019 Sum_probs=191.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHH
Q 003028 399 NRLIHSYGRANYLNEALDVFKQMQVVGCEPDRV----TYCTLIDIHAKAGFLDVAMDMYKKMQAAGL-SPD----TFTYS 469 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~----ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~-~pd----~~ty~ 469 (856)
..+...+...|++++|...+++.....-..+.. +++.+...+...|++++|...+++...... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334456678999999999999987754222222 566777888899999999999998865311 112 23356
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C--CHHHH
Q 003028 470 VIINCLGKAGHLQAAHQLFCEMVNQ----GCI--P-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFE--P--DKVTY 538 (856)
Q Consensus 470 ~Li~~y~k~g~~~~A~~lf~~m~~~----g~~--p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~--p--d~~ty 538 (856)
.+...|...|++++|...+++.... +.. | ....+..+...|...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6778899999999999999987643 221 2 2346677888999999999999999988764322 1 23467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhhHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHH
Q 003028 539 SIVMEVLGHCGYLDEAEAVFAEMRRKNWVPD--EPVYG----LLVDLWGKAGNVRKAWEWYEAMLQAGLRP---NVPTCN 609 (856)
Q Consensus 539 ~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd--~~~y~----~Li~~~~k~g~~~~A~~l~~~m~~~g~~p---d~~t~n 609 (856)
..+...+...|++++|...+++.......++ ..... ..+..+...|++++|..++++.......+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7788889999999999999999875421211 11111 23345779999999999999886532111 133567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003028 610 SLLSAFLRVGQLSDAYHLLQGMLN----LGLKPSL-QTYTLLLSCCTEARSPYDMGFCHELMAV 668 (856)
Q Consensus 610 ~Li~ay~~~g~~e~A~~l~~~M~~----~g~~Pd~-~ty~~Ll~a~~~~g~~~~a~~l~~~m~~ 668 (856)
.+...+...|++++|...+++... .|..++. ..+..+-.++...|+.++|...++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888999999999999999998865 2222233 2555556678888998888877665543
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.94 E-value=7.7e-08 Score=93.19 Aligned_cols=163 Identities=12% Similarity=0.046 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
.|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45555566666666666666666665432 3345556666666666666666666666665542 234555555555666
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003028 477 KAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEA 556 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~ 556 (856)
..|++++|.++|+.+.+.. +.+...+..+...|...|++++|++.++++.... +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666555432 1244455555555555555555555555554432 1233444445555555555555555
Q ss_pred HHHHHHH
Q 003028 557 VFAEMRR 563 (856)
Q Consensus 557 l~~~m~~ 563 (856)
.++.+.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.92 E-value=2.4e-07 Score=102.52 Aligned_cols=233 Identities=8% Similarity=-0.030 Sum_probs=153.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---CC-CHHHHHH
Q 003028 472 INCLGKAGHLQAAHQLFCEMVNQGC-IP----NLVTYNIMIALQAKARNYQSALKLYRDMQNAG--F---EP-DKVTYSI 540 (856)
Q Consensus 472 i~~y~k~g~~~~A~~lf~~m~~~g~-~p----d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g--i---~p-d~~ty~~ 540 (856)
...+...|++++|...|++..+.-. .+ ...++..+...|...|++++|+..+.+..+.. . .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3456677888888888887765310 12 23467777888888888888888888765431 1 11 1346677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHH
Q 003028 541 VMEVLGHCGYLDEAEAVFAEMRRK----NWV-PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA----GLRPNVPTCNSL 611 (856)
Q Consensus 541 ll~a~~~~g~~~~A~~l~~~m~~~----g~~-pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~----g~~pd~~t~n~L 611 (856)
+...|...|++++|...|.+..+. +.. ....++..+...|...|++++|...|++..+. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 778888889999998888877653 111 12356778888899999999999999988761 223346788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC---CCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCc
Q 003028 612 LSAFLRVGQLSDAYHLLQGMLNLGL---KPSL-QTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDG 687 (856)
Q Consensus 612 i~ay~~~g~~e~A~~l~~~M~~~g~---~Pd~-~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~ 687 (856)
...|.+.|++++|...+++.++..- .|.. ..+..+-..+...++.+.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~----------------------------- 318 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK----------------------------- 318 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH-----------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH-----------------------------
Confidence 9999999999999999999887311 2222 233333333444444211
Q ss_pred ccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 003028 688 QNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQ 738 (856)
Q Consensus 688 ~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~ 738 (856)
.+.+..+++... .......++..+...|.+.|++++|...|++..+
T Consensus 319 ---~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 319 ---IHDLLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp ---HHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112222222211 0111234567899999999999999999998764
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.90 E-value=9.5e-08 Score=105.76 Aligned_cols=223 Identities=9% Similarity=-0.023 Sum_probs=101.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CC-CHHHHHHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGL-SPD----TFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GC-IP-NLVTYNIMIA 508 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~-~pd----~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~-~p-d~~ty~~Li~ 508 (856)
+...|++++|...|++..+.-. .++ ..++..+...|...|+++.|...+++..+. +. .+ ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3455555555555555543210 011 234444555555555555555555544321 00 00 1234455555
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHhhHHHHHH
Q 003028 509 LQAKARNYQSALKLYRDMQNA----GFEP-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRR-----KNWVPDEPVYGLLVD 578 (856)
Q Consensus 509 ~~~~~g~~~~A~~ll~~M~~~----gi~p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~y~~Li~ 578 (856)
.|...|++++|++.|.+..+. +..+ ...++..+...|...|++++|...+++..+ .. .....++..+..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHH
Confidence 555555555555555544331 1110 122344455555555566666555555544 22 112444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 003028 579 LWGKAGNVRKAWEWYEAMLQAG----LRPNVPTCNSLLSAFLRVGQ---LSDAYHLLQGMLNLGLKPSL-QTYTLLLSCC 650 (856)
Q Consensus 579 ~~~k~g~~~~A~~l~~~m~~~g----~~pd~~t~n~Li~ay~~~g~---~e~A~~l~~~M~~~g~~Pd~-~ty~~Ll~a~ 650 (856)
.|.+.|++++|...+++..+.. -+.....+..+...|...++ +++|+..+++ .+..|+. ..+..+-..+
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHH
Confidence 5556666666666655555321 11112233444444444555 4455554443 1222222 2333344445
Q ss_pred HhcCCcchHHHHHHHH
Q 003028 651 TEARSPYDMGFCHELM 666 (856)
Q Consensus 651 ~~~g~~~~a~~l~~~m 666 (856)
...|+.++|...+++.
T Consensus 347 ~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5555555555554443
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.90 E-value=1.4e-08 Score=105.75 Aligned_cols=134 Identities=16% Similarity=0.119 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C-
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVV------GC-EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA------G- 460 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~------g~-~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~------g- 460 (856)
..+|..+...|...|++++|+..|++..+. +- +....+|..+...|...|++++|.+.|++.... .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 334555555555555555555555555432 11 122344555555666666666666666555443 0
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 461 LSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ------GCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQN 528 (856)
Q Consensus 461 ~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~------g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 528 (856)
.+....++..+...|...|++++|..+|++..+. +..| ...++..+...|...|++++|+.+|+++.+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122445556666666667777777666666543 1111 244566667777777777777777776654
No 80
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.90 E-value=3.8e-06 Score=99.92 Aligned_cols=412 Identities=10% Similarity=0.034 Sum_probs=272.4
Q ss_pred CCCHHHHHHHHHhh---hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCCHH
Q 003028 324 SMDAYQANQVLKQL---QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQ---FGAINKLLDQMVRDG-CQPNVV 396 (856)
Q Consensus 324 ~~~~~~~~~vL~~l---~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~---~~~A~~lf~~m~~~g-~~pd~~ 396 (856)
.-+...|..+++.+ +....+..+|+.+... ++.+...|...+..-.+.+. ++.+..+|+...... ..|++.
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 45777888887754 5778999999999875 44567789999999889998 999999999998752 138999
Q ss_pred HHHHHHHHHHhcCCH--------HHHHHHHHHHHH-cCC-CCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYL--------NEALDVFKQMQV-VGC-EPD-RVTYCTLIDIHAK---------AGFLDVAMDMYKKM 456 (856)
Q Consensus 397 ty~~Li~~~~~~g~~--------~~A~~lf~~m~~-~g~-~pd-~~ty~~Ll~~~~k---------~g~~~~A~~l~~~m 456 (856)
.|...+....+.++. +...++|+.... .|. .++ ...|...+..... .++++.+..+|+..
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 999998877766543 344577877554 466 554 5678777765442 34578899999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHccC-------------CHHHHHHHHHHHHHc--CCC---CC-------------------
Q 003028 457 QAAGLSPDTFTYSVIINCLGKAG-------------HLQAAHQLFCEMVNQ--GCI---PN------------------- 499 (856)
Q Consensus 457 ~~~g~~pd~~ty~~Li~~y~k~g-------------~~~~A~~lf~~m~~~--g~~---pd------------------- 499 (856)
+......-..+|......--..+ +++.|...+.++... ++. |.
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 85322212344433222211111 233445555544321 111 10
Q ss_pred -HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCCH
Q 003028 500 -LVTYNIMIALQAKAR-------NYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAE-AVFAEMRRKNWVPDE 570 (856)
Q Consensus 500 -~~ty~~Li~~~~~~g-------~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~-~l~~~m~~~g~~pd~ 570 (856)
...|...+..--..+ ..+.+..+|++.... +.-+...|...+..+...|+.++|. .+|+..... ++.+.
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~ 378 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSA 378 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCH
Confidence 234555554433222 134456778877765 2335667777778788889999996 999999874 34566
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003028 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQAG---------LRPN------------VPTCNSLLSAFLRVGQLSDAYHLLQ 629 (856)
Q Consensus 571 ~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g---------~~pd------------~~t~n~Li~ay~~~g~~e~A~~l~~ 629 (856)
..+-.++...-+.|+++.|..+|+.+.+.. -.|+ ..+|-..+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 677888888999999999999999988631 0132 3468888888889999999999999
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHh-cCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCC
Q 003028 630 GMLNL-GLKPSLQTYTLLLSCCTE-ARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRE 707 (856)
Q Consensus 630 ~M~~~-g~~Pd~~ty~~Ll~a~~~-~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~ 707 (856)
+.++. + .+....|......-.+ .++.+.|..+++...+.-+....++...+. +....+..+.+..+++........
T Consensus 459 ~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~-fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 459 KCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD-FLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH-HHHhCCCHHHHHHHHHHHHHhcCC
Confidence 99985 2 1222333322222223 355889999999887765543333322111 000112456778888876655442
Q ss_pred --chHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 003028 708 --SKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNV 741 (856)
Q Consensus 708 --~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~ 741 (856)
....+|..+++.-.+.|..+.+..+.+++.+.-.
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3567899999999999999999999999998754
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.89 E-value=1.7e-08 Score=105.16 Aligned_cols=226 Identities=15% Similarity=0.076 Sum_probs=153.2
Q ss_pred hcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHH
Q 003028 407 RANYLNEALDVFKQMQV-------VGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA------GL-SPDTFTYSVII 472 (856)
Q Consensus 407 ~~g~~~~A~~lf~~m~~-------~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~------g~-~pd~~ty~~Li 472 (856)
..|++++|+.+|++..+ ...+....++..+...|...|++++|...|++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555554433 222334677888999999999999999999998764 22 23456788899
Q ss_pred HHHHccCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCC-HHHH
Q 003028 473 NCLGKAGHLQAAHQLFCEMVNQ------GC-IPNLVTYNIMIALQAKARNYQSALKLYRDMQNA------GFEPD-KVTY 538 (856)
Q Consensus 473 ~~y~k~g~~~~A~~lf~~m~~~------g~-~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~------gi~pd-~~ty 538 (856)
..|...|++++|.+.|++..+. .. +....+|..+...|...|++++|+.+|+++.+. +-.|+ ..++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988754 11 224567888999999999999999999988764 11232 4577
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCC-HhhHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCC
Q 003028 539 SIVMEVLGHCGYLDEAEAVFAEMRRK-------NWVPD-EPVYGLLVDLWGKAGNV------RKAWEWYEAMLQAGLRPN 604 (856)
Q Consensus 539 ~~ll~a~~~~g~~~~A~~l~~~m~~~-------g~~pd-~~~y~~Li~~~~k~g~~------~~A~~l~~~m~~~g~~pd 604 (856)
..+...+...|++++|..+++++.+. ...+. ...+..+...+...+.. ..+...++.+.. ..+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 88888999999999999999988763 11222 23333333333333322 222222222111 11123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 605 VPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 605 ~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
..++..+...|...|++++|..+|++.++
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788899999999999999999998875
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.79 E-value=2e-07 Score=112.08 Aligned_cols=166 Identities=9% Similarity=0.032 Sum_probs=133.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
+..+|+.|..+|.+.|++++|.+.|++..+.. +-+...|+.|...|.+.|++++|++.|++..+.. +-+...|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 35678888888999999999999998888752 2357788888888899999999999998887764 445778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQS 518 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 518 (856)
+|.+.|++++|++.|++.++.. +-+..+|+.+..+|.+.|++++|.+.|++..+.... +...|..|...|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 8888999999999888888763 336778888888888888888888888888775322 56778888888888888888
Q ss_pred HHHHHHHHHH
Q 003028 519 ALKLYRDMQN 528 (856)
Q Consensus 519 A~~ll~~M~~ 528 (856)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776653
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.78 E-value=6.3e-07 Score=91.12 Aligned_cols=206 Identities=14% Similarity=0.042 Sum_probs=149.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 428 PDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMI 507 (856)
Q Consensus 428 pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li 507 (856)
.|+..+..+...+...|++++|++.|++.++....++...+..+..+|...|++++|.+.|++..+.... +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4667888888899999999999999999988754367778877889999999999999999998876332 567888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HhhHHHHH
Q 003028 508 ALQAKARNYQSALKLYRDMQNAGFEPDK-------VTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPD---EPVYGLLV 577 (856)
Q Consensus 508 ~~~~~~g~~~~A~~ll~~M~~~gi~pd~-------~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd---~~~y~~Li 577 (856)
..|...|++++|+..|++..+... .+. ..|..+-..+...|++++|...|+...+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 999999999999999998887532 233 34666777788889999999999888764 343 45666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 578 DLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLL 647 (856)
Q Consensus 578 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll 647 (856)
..|...| ..+++++...+ ..+...|..+. ....+.+++|+..|++.++ +.|+......++
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 6665443 34445554432 23444444443 3345668899999998887 456654443333
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.77 E-value=3.3e-07 Score=110.18 Aligned_cols=165 Identities=15% Similarity=0.134 Sum_probs=146.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
+...|+.|-..|.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|++.|++.++.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56789999999999999999999999998864 4468899999999999999999999999999864 336889999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChH
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEP-DKVTYSIVMEVLGHCGYLD 552 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~p-d~~ty~~ll~a~~~~g~~~ 552 (856)
+|.+.|++++|.+.|++..+.... +...|+.+...|.+.|++++|++.|++..+.. | +...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHH
Confidence 999999999999999998876432 67899999999999999999999999998763 4 4678899999999999999
Q ss_pred HHHHHHHHHHH
Q 003028 553 EAEAVFAEMRR 563 (856)
Q Consensus 553 ~A~~l~~~m~~ 563 (856)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888764
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.75 E-value=1.1e-06 Score=89.31 Aligned_cols=196 Identities=10% Similarity=-0.013 Sum_probs=145.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 358 HDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 358 pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
.|+..|..+...+.+.|++++|...|+...+....++...|..+..+|...|++++|++.|++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35678888888899999999999999998876433677777778899999999999999999988764 34567888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAAGLSPDT-------FTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPN---LVTYNIMI 507 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~-------~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd---~~ty~~Li 507 (856)
.+|...|++++|++.|++..+.. +.+. .+|..+-..+...|++++|.+.|++..+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999988763 2344 45777778888899999999999998875 344 45666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003028 508 ALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN 565 (856)
Q Consensus 508 ~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g 565 (856)
..|...| ..+++++...+ ..+...|..... ...+.+++|...++...+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 7775544 33445544433 223334433332 33466889999999888754
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.71 E-value=2.7e-07 Score=98.46 Aligned_cols=166 Identities=13% Similarity=0.071 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC-C----
Q 003028 466 FTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCIP-NLVTYNIMIALQAKA-RNYQSALKLYRDMQNAGFEP-D---- 534 (856)
Q Consensus 466 ~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~p-d~~ty~~Li~~~~~~-g~~~~A~~ll~~M~~~gi~p-d---- 534 (856)
.+|+.+..+|.+.|++++|...|++..+. |-.. -..+|+.+...|... |++++|+..|++..+..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34444555555555555555555444321 1000 123566677777775 88888888887765431100 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---
Q 003028 535 KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDE------PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNV--- 605 (856)
Q Consensus 535 ~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~------~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~--- 605 (856)
..++..+...+...|++++|...|+...+....... ..|..+..+|...|++++|...|++..+. .|+.
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCc
Confidence 235667777788888888888888887765432221 14566677788888888888888877642 2332
Q ss_pred ---HHHHHHHHHHH--HcCCHHHHHHHHHHHHH
Q 003028 606 ---PTCNSLLSAFL--RVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 606 ---~t~n~Li~ay~--~~g~~e~A~~l~~~M~~ 633 (856)
..+..++.+|. ..+++++|+..|+++..
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 23444556654 34568888888766643
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.71 E-value=8e-07 Score=80.71 Aligned_cols=126 Identities=12% Similarity=0.168 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
|..+...+...|++++|..+|+++.+.. +.+...|..+...+...|++++|..+|+++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3444444444455555555554444332 1234444444444444444444444444444332 2233334444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEM 491 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m 491 (856)
.|++++|.++++++.+.. +.+..++..+...|.+.|++++|.+.|+++
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 444444444444443331 122333334444444444444444444433
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.70 E-value=9.5e-07 Score=80.18 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
.|..+...|...|++++|..+|+++.+.. +.+...+..+...+...|++++|..+++++.... +.+...+..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 57778888999999999999999998764 4567888888999999999999999999998764 446788888999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003028 477 KAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG 530 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g 530 (856)
..|++++|.++|+++.+... .+...+..+...|.+.|++++|...|+++....
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 99999999999999887642 367788889999999999999999999887653
No 89
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.68 E-value=9.6e-06 Score=96.43 Aligned_cols=393 Identities=10% Similarity=0.073 Sum_probs=262.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHH
Q 003028 342 VALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANY---LNEALDVF 418 (856)
Q Consensus 342 ~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~---~~~A~~lf 418 (856)
..+..|+...... +.|...|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.+. ++.+.++|
T Consensus 50 d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3444455544433 358889999999999999999999999999986 66788899999999899998 99999999
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------c
Q 003028 419 KQMQVVG-CEPDRVTYCTLIDIHAKAGFL--------DVAMDMYKKMQA-AGL-SP-DTFTYSVIINCLG---------K 477 (856)
Q Consensus 419 ~~m~~~g-~~pd~~ty~~Ll~~~~k~g~~--------~~A~~l~~~m~~-~g~-~p-d~~ty~~Li~~y~---------k 477 (856)
++..... ..|++..|...+.-..+.++. +.+.++|+..+. .|. .+ +...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998753 138888999888877766653 345578877654 366 44 4578888877644 2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHc--CCC----------
Q 003028 478 AGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKAR-------------NYQSALKLYRDMQNA--GFE---------- 532 (856)
Q Consensus 478 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g-------------~~~~A~~ll~~M~~~--gi~---------- 532 (856)
.++++.+.++|+.........-..+|......--..+ .++.|...+.++... ++.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 3467889999999886422212234443332221111 223344555544321 211
Q ss_pred -----C-----C---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHH-H
Q 003028 533 -----P-----D---KVTYSIVMEVLGHCG-------YLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAW-E 591 (856)
Q Consensus 533 -----p-----d---~~ty~~ll~a~~~~g-------~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~-~ 591 (856)
| + ...|...+.---..+ ..+.+..+|+++.... ..+..+|-..+..+...|+.++|. .
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 1 123333333222222 1233556788887753 447788888888888899999996 9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHH
Q 003028 592 WYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLG---------LKPS------------LQTYTLLLSCC 650 (856)
Q Consensus 592 l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g---------~~Pd------------~~ty~~Ll~a~ 650 (856)
+|++.... ++.+...|-.++....+.|++++|.++|+++++.. -.|+ ...|...+...
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 99999864 56678888899999999999999999999998631 0142 23577777777
Q ss_pred HhcCCcchHHHHHHHHHHc-CC-ChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhH
Q 003028 651 TEARSPYDMGFCHELMAVS-GH-PAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEE 728 (856)
Q Consensus 651 ~~~g~~~~a~~l~~~m~~~-g~-~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~ee 728 (856)
.+.+..+.|..+++...+. +. ..+.++.........+ +..+.+..+++.....- ..+..++..+++.....|+.+.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~-~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS-KDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT-SCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHH
Confidence 7888899999999998876 32 2333332211111111 22355555655443332 2245567899999999999999
Q ss_pred HHHHHHHHHhCCC
Q 003028 729 AGSVWEVAAQKNV 741 (856)
Q Consensus 729 A~~lf~~m~~~~~ 741 (856)
|..+|++......
T Consensus 523 AR~lferal~~~~ 535 (679)
T 4e6h_A 523 VKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHTTTSS
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987754
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.62 E-value=4.8e-07 Score=96.50 Aligned_cols=178 Identities=13% Similarity=0.000 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 003028 445 FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCIPN-LVTYNIMIALQAKARNYQSA 519 (856)
Q Consensus 445 ~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~pd-~~ty~~Li~~~~~~g~~~~A 519 (856)
++++|...|++. ...|...|++++|...|.+..+. |..++ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666655 33466677777777777765542 21112 46788899999999999999
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-C----HhhHHHHHHHHHhcCCHHH
Q 003028 520 LKLYRDMQNAGFE-PD----KVTYSIVMEVLGHC-GYLDEAEAVFAEMRRKNWVP-D----EPVYGLLVDLWGKAGNVRK 588 (856)
Q Consensus 520 ~~ll~~M~~~gi~-pd----~~ty~~ll~a~~~~-g~~~~A~~l~~~m~~~g~~p-d----~~~y~~Li~~~~k~g~~~~ 588 (856)
+..|++..+.... .+ ..++..+...|... |++++|...|++..+..... + ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999987653111 11 34778888899996 99999999999987642111 1 3568889999999999999
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003028 589 AWEWYEAMLQAGLRPNV------PTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS 639 (856)
Q Consensus 589 A~~l~~~m~~~g~~pd~------~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd 639 (856)
|...|++..+....... ..|..+..+|...|++++|+..|++.++ +.|+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~ 231 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPN 231 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 99999999875322221 2678888899999999999999999875 4454
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.54 E-value=6.6e-06 Score=87.70 Aligned_cols=144 Identities=13% Similarity=0.103 Sum_probs=62.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 449 AMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC-IPNLVTYNIMIALQAKARNYQSALKLYRDMQ 527 (856)
Q Consensus 449 A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~-~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 527 (856)
|+..|+++...+ .++..++..+..+|...|++++|++++.+....+. .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444443332 23333334444555555555555555554433322 1133444445555555555555555555554
Q ss_pred HcCCCC-----CHHHHHHHHHHHHh--cC--ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 528 NAGFEP-----DKVTYSIVMEVLGH--CG--YLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 528 ~~gi~p-----d~~ty~~ll~a~~~--~g--~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
+. .| +..+...++.++.. .| +..+|..+|+++.+. .|+......|+.++.+.|++++|+..++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 23 13333334433221 12 455555555554432 1232222333334555555555555555433
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.53 E-value=1.6e-05 Score=84.66 Aligned_cols=244 Identities=11% Similarity=0.052 Sum_probs=163.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003028 404 SYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA 483 (856)
Q Consensus 404 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~ 483 (856)
-..-.|.+..++.-..++.. ..+...-..+.++|...|++... ..-.|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 33446777777763333221 22223344455777777776632 12234444444444433 322
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003028 484 AHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFE-PDKVTYSIVMEVLGHCGYLDEAEAVFAEMR 562 (856)
Q Consensus 484 A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~-pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~ 562 (856)
|...|+++.+.+ .++..++..+..++...|++++|++++.+....+.. -+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888877654 446666678889999999999999999998766542 246678888999999999999999999998
Q ss_pred HcCCCC-----CHhhHHHHHHHHH--hcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 563 RKNWVP-----DEPVYGLLVDLWG--KAG--NVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 563 ~~g~~p-----d~~~y~~Li~~~~--k~g--~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+. .| +..+...|..++. ..| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 35 3556666666633 334 899999999999764 46533434455589999999999999997764
Q ss_pred C-----CC---CCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003028 634 L-----GL---KPS-LQTYTLLLSCCTEARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 634 ~-----g~---~Pd-~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~ 671 (856)
. .. .|+ ..++..++......|+ ++..++..+....+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 2 11 244 4566566666666676 77777777776654
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.52 E-value=4.1e-06 Score=87.13 Aligned_cols=100 Identities=6% Similarity=-0.066 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN---VVTYNRLIHSYGRANYLNEALDVFKQMQVVGC--EPDRVTY 433 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd---~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~--~pd~~ty 433 (856)
+...+-.+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44555556666666677777777777666542 112 45566666666666777777777766665421 1113345
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHHC
Q 003028 434 CTLIDIHAK--------AGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 434 ~~Ll~~~~k--------~g~~~~A~~l~~~m~~~ 459 (856)
..+..++.. .|++++|+..|+++++.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 555555555 66666666666666554
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.49 E-value=7e-06 Score=85.32 Aligned_cols=86 Identities=7% Similarity=0.019 Sum_probs=38.9
Q ss_pred hChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHh-------
Q 003028 338 QDHTVALGFFNWLRRQAGFKHD-EHTYTTMVGILGRARQFGAINKLLDQMVRDGC-QP-NVVTYNRLIHSYGR------- 407 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd-~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~-~p-d~~ty~~Li~~~~~------- 407 (856)
++++.|+..|+.+....+-.+. ...+..+..+|.+.|++++|...|+...+... .| ....+..+..++..
T Consensus 29 g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~ 108 (261)
T 3qky_A 29 GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYEL 108 (261)
T ss_dssp TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTS
T ss_pred CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccc
Confidence 4555555555555432211111 33444455555555555555555555544310 01 12334444444444
Q ss_pred -cCCHHHHHHHHHHHHH
Q 003028 408 -ANYLNEALDVFKQMQV 423 (856)
Q Consensus 408 -~g~~~~A~~lf~~m~~ 423 (856)
.|++++|+..|+++.+
T Consensus 109 ~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 109 DQTDTRKAIEAFQLFID 125 (261)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHH
Confidence 5555555555555544
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.37 E-value=1.8e-05 Score=79.52 Aligned_cols=159 Identities=11% Similarity=0.027 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003028 364 TTMVGILGRARQFGAINKLLDQMVRDGCQPN-VVTYNR----------------LIHSYGRANYLNEALDVFKQMQVVGC 426 (856)
Q Consensus 364 ~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd-~~ty~~----------------Li~~~~~~g~~~~A~~lf~~m~~~g~ 426 (856)
-.....+...|++++|...|+...+. .|+ ...|.. +..+|.+.|++++|+..|++..+..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 33444556677777777777776653 232 333333 5555555555555555555555443
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 427 EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH--LQAAHQLFCEMVNQGCIPNLVTYN 504 (856)
Q Consensus 427 ~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~--~~~A~~lf~~m~~~g~~pd~~ty~ 504 (856)
+-+...|..+..++...|++++|+..|++.++.. +-+..++..+...|...|+ .+.+...+..... ..|....+.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 3344555555555555555555555555555542 2244455555544443332 2233333333321 111111222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 505 IMIALQAKARNYQSALKLYRDMQN 528 (856)
Q Consensus 505 ~Li~~~~~~g~~~~A~~ll~~M~~ 528 (856)
.+-.++...|++++|+..|++..+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 233334444555555555555543
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.36 E-value=0.00017 Score=77.26 Aligned_cols=230 Identities=7% Similarity=-0.002 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc---CCHH
Q 003028 377 GAINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN--YLNEALDVFKQMQVVGCEPDRVTYCTLIDIH----AKA---GFLD 447 (856)
Q Consensus 377 ~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g--~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~----~k~---g~~~ 447 (856)
++|..+++.+...+ +-+...|+.--..+...+ ++++++++++.+.... +-+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45555555555432 123344554444444455 5566666665555443 22333444333333 333 4556
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------HHHH
Q 003028 448 VAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQ--AAHQLFCEMVNQGCIPNLVTYNIMIALQAKARN------YQSA 519 (856)
Q Consensus 448 ~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~--~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~------~~~A 519 (856)
+++++++.+.+.. +-+-.+|+--...+.+.|.++ ++.+.++.+.+.... |-..|+.-...+.+.+. ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 6666666665542 335555555555555555555 666666666655433 55566555444444444 6667
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 520 LKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDE-AEAVFAEMRRKN--WVPDEPVYGLLVDLWGKAGNVRKAWEWYEAM 596 (856)
Q Consensus 520 ~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~-A~~l~~~m~~~g--~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m 596 (856)
++.++++.... +-|...|+.+-..+.+.|+... +..+...+...+ -..+...+..+.+.|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 77776666553 2345566666666666655333 334444433321 1235566677777777777777777777777
Q ss_pred HHcCCCCCHHHHHHH
Q 003028 597 LQAGLRPNVPTCNSL 611 (856)
Q Consensus 597 ~~~g~~pd~~t~n~L 611 (856)
.+.--+.....|+..
T Consensus 285 ~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 285 KSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHTTCGGGHHHHHHH
T ss_pred HhccChHHHHHHHHH
Confidence 653112334444443
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.36 E-value=1.7e-05 Score=79.72 Aligned_cols=187 Identities=10% Similarity=-0.006 Sum_probs=85.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPD-RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd-~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
+-.....+.+.|++++|+..|++..+.. |+ ...|.. ...... ........+.+..+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~-----~~~~~~--------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYW-----TNVDKN--------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHH-----HHSCTT--------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHH-----hhhcch--------------hhhhHHHHHHHHHHHH
Confidence 3334455677888888888888877643 32 333333 000000 0001111222455555
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hHHH
Q 003028 477 KAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY--LDEA 554 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~--~~~A 554 (856)
+.|++++|...|++..+.... +...|..+...|...|++++|+..|++..+.. +-+...+..+...|...|+ ...+
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 555555555555555544221 44555555555555555555555555555432 1123444444444433332 2223
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 555 EAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSL 611 (856)
Q Consensus 555 ~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~L 611 (856)
...+..... ..|....+..+..++...|++++|...|++..+ +.|+......+
T Consensus 144 ~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 144 ETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 333333221 111111222233344455666666666666654 34555444433
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.36 E-value=2.6e-05 Score=78.65 Aligned_cols=86 Identities=14% Similarity=0.007 Sum_probs=39.8
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C--
Q 003028 548 CGYLDEAEAVFAEMRRKNWV-PDEPVYGLLVDLWGK----AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRV-G-- 619 (856)
Q Consensus 548 ~g~~~~A~~l~~~m~~~g~~-pd~~~y~~Li~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~-g-- 619 (856)
.+++++|...|+...+.+.. .....+..|-.+|.. .+++++|..+|++..+. ..+...+..|...|... |
T Consensus 102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~ 179 (212)
T 3rjv_A 102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGF 179 (212)
T ss_dssp SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTT
T ss_pred ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCC
Confidence 34445555555444443310 013444444444444 45555555555555543 12333444454444432 2
Q ss_pred ---CHHHHHHHHHHHHHCC
Q 003028 620 ---QLSDAYHLLQGMLNLG 635 (856)
Q Consensus 620 ---~~e~A~~l~~~M~~~g 635 (856)
+.++|+..|++..+.|
T Consensus 180 ~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 180 IEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp BCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcC
Confidence 5555555555555443
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.35 E-value=3.5e-05 Score=78.31 Aligned_cols=185 Identities=9% Similarity=-0.011 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQ-P-NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDR----VTY 433 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~-p-d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~----~ty 433 (856)
...+..+...+.+.|++++|...|+.+.+.... + ....+..+..+|.+.|++++|++.|+++.+.. |+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 334555666677778888888888877764211 1 13456667777788888888888888777653 221 133
Q ss_pred HHHHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 003028 434 CTLIDIHAK------------------AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG 495 (856)
Q Consensus 434 ~~Ll~~~~k------------------~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g 495 (856)
..+..++.+ .|++++|...|+++++.. +-+...+.++... ..+...+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHHH---
Confidence 333333433 456666666666666542 1122222111100 00000000
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003028 496 CIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD--KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN 565 (856)
Q Consensus 496 ~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd--~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g 565 (856)
.....+...|.+.|++++|+..|+++.+...... ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123456678888888888888888877532211 2456777888888888888888888877654
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.33 E-value=5.1e-06 Score=99.63 Aligned_cols=173 Identities=10% Similarity=-0.012 Sum_probs=130.1
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 441 AKAGFLDVAMDMYKKMQ--------AAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512 (856)
Q Consensus 441 ~k~g~~~~A~~l~~~m~--------~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~ 512 (856)
...|++++|++.|++.. +. .+.+...+..+...|...|++++|.+.|++..+... -+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 66788888888888887 33 234567788888888888889888888888876532 267788888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 003028 513 ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEW 592 (856)
Q Consensus 513 ~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l 592 (856)
.|++++|++.|++..+... -+...|..+..++...|++++ ...|++..+.. .-+...|..+..+|.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999988877542 235567778888888899988 88888888754 23667888888889999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHHcCC
Q 003028 593 YEAMLQAGLRPN-VPTCNSLLSAFLRVGQ 620 (856)
Q Consensus 593 ~~~m~~~g~~pd-~~t~n~Li~ay~~~g~ 620 (856)
|++..+. .|+ ...|..+..+|...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 8887763 354 5667777777766555
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.32 E-value=1.9e-05 Score=84.68 Aligned_cols=128 Identities=10% Similarity=0.039 Sum_probs=65.0
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDV 417 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 417 (856)
+++.+|.++++...+... .. .+...++++.|..+|+.. ...|...|++++|.+.
T Consensus 5 ~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 455667777766654211 00 011135666666665543 3456667777777777
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 003028 418 FKQMQVV----GCEP-DRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA----GLSP-DTFTYSVIINCLGKAGHLQAAHQL 487 (856)
Q Consensus 418 f~~m~~~----g~~p-d~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~----g~~p-d~~ty~~Li~~y~k~g~~~~A~~l 487 (856)
|.+..+. +-.. -..+|+.+...|.+.|++++|+..|++.++. |-.. -..+++.+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7666432 1000 1235666666666667777766666665432 1000 12334444444544 555555555
Q ss_pred HHHHH
Q 003028 488 FCEMV 492 (856)
Q Consensus 488 f~~m~ 492 (856)
|++..
T Consensus 138 ~~~Al 142 (307)
T 2ifu_A 138 YQQAA 142 (307)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.31 E-value=6.4e-05 Score=76.34 Aligned_cols=183 Identities=11% Similarity=0.046 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCH-HHHHH
Q 003028 430 RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLS-P-DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCI-PNL-VTYNI 505 (856)
Q Consensus 430 ~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~-p-d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~-pd~-~ty~~ 505 (856)
...+..+...+.+.|++++|+..|+++++.... + ....+..+..+|.+.|++++|...|+++.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445556667788888888888888888775321 1 1356777778888888888888888888765322 111 13333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhH-----------
Q 003028 506 MIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPD-EPVY----------- 573 (856)
Q Consensus 506 Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd-~~~y----------- 573 (856)
+...+...+.. .+. .|..+...+...|+.++|...|+.+.+.. |+ ...+
T Consensus 84 ~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 84 RGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHH
Confidence 44444432100 000 01111112223344444444444444321 11 1111
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 574 ------GLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN----VPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 574 ------~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd----~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
..+...|.+.|++++|...|+++.+. .|+ ...+..+..+|.+.|+.++|.+.++.+..
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 23344555666666666666666553 122 13455566666666666666666665554
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.31 E-value=1.4e-05 Score=84.85 Aligned_cols=162 Identities=10% Similarity=-0.037 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHH
Q 003028 465 TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSI-VME 543 (856)
Q Consensus 465 ~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~-ll~ 543 (856)
...+..+...+...|++++|...|++....... +...+..+...|...|++++|..+|+++... .|+...... ...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 344444555555566666666666655543211 4455555666666666666666666655443 233222111 112
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCC
Q 003028 544 VLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN---VPTCNSLLSAFLRVGQ 620 (856)
Q Consensus 544 a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd---~~t~n~Li~ay~~~g~ 620 (856)
.+...++.++|...+++..... +.+...+..+...|...|++++|...|+++.... |+ ...+..++..|...|+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHcCC
Confidence 2444555566666666665543 2345566666666666666666666666666542 22 4566666667777777
Q ss_pred HHHHHHHHHHHH
Q 003028 621 LSDAYHLLQGML 632 (856)
Q Consensus 621 ~e~A~~l~~~M~ 632 (856)
.++|...|++.+
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 666666666544
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.29 E-value=4e-05 Score=77.29 Aligned_cols=106 Identities=14% Similarity=0.075 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 003028 379 INKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG----FLDVAMDMYK 454 (856)
Q Consensus 379 A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g----~~~~A~~l~~ 454 (856)
|.+.|....+. -+...+..|-..|...+++++|+++|++..+.| +...+..|-..|.. + ++++|++.|+
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 44444444443 244445555555555555555555555554433 33444444444444 3 4555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHc
Q 003028 455 KMQAAGLSPDTFTYSVIINCLGK----AGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 455 ~m~~~g~~pd~~ty~~Li~~y~k----~g~~~~A~~lf~~m~~~ 494 (856)
+..+.| +...+..|-.+|.. .+++++|.++|++..+.
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 544432 33444444444443 44444444444444443
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.28 E-value=8.4e-06 Score=79.44 Aligned_cols=160 Identities=8% Similarity=0.002 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI-HA 441 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~-~~ 441 (856)
+..+...+.+.|++++|...|+...+.. +.+...|..+...|.+.|++++|+..|++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3445555666666666666666654421 2345566666666666666666666666654432 233222221111 11
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 003028 442 KAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSAL 520 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~ 520 (856)
..+...+|...|++..+.. +-+...+..+...|...|++++|...|+++.+....+ +...+..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1122223455555555432 2234555555555555555555555555555442211 2334555555555555555555
Q ss_pred HHHHHH
Q 003028 521 KLYRDM 526 (856)
Q Consensus 521 ~ll~~M 526 (856)
..|++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.28 E-value=1.6e-05 Score=92.98 Aligned_cols=151 Identities=13% Similarity=-0.011 Sum_probs=63.6
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVF 418 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf 418 (856)
++++|++.|+...+.. ..+...|..+...+.+.|++++|.+.|++..+.. +.+...|..+...|...|++++|.+.|
T Consensus 4 ~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444555554443211 1124445555555555555555555555554431 123444455555555555555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHc
Q 003028 419 KQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKA---GHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 419 ~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~---g~~~~A~~lf~~m~~~ 494 (856)
++..+.. +.+...|..+..+|.+.|++++|.+.|++..+.. +.+...+..+...|... |+.++|.+.|++..+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 5544432 2234444445555555555555555555544432 12344444444444444 5555555555544443
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.27 E-value=1.7e-05 Score=84.22 Aligned_cols=164 Identities=12% Similarity=0.015 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI- 437 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll- 437 (856)
+...+..+...+...|++++|..+|++..+.. +-+...+..|...|.+.|++++|..+|+++... .|+........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 34455566666677777777777777766542 235566666777777777777777777766543 34433322222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCH
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCI-PNLVTYNIMIALQAKARNY 516 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~-pd~~ty~~Li~~~~~~g~~ 516 (856)
..+.+.++.++|...|++..+.. +.+...+..+...|...|++++|...|.++...... .+...+..|...|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 22445566666666666666652 335666666667777777777777777766654221 1245666666666666666
Q ss_pred HHHHHHHHHH
Q 003028 517 QSALKLYRDM 526 (856)
Q Consensus 517 ~~A~~ll~~M 526 (856)
++|...|++.
T Consensus 272 ~~a~~~~r~a 281 (287)
T 3qou_A 272 DALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 6666666554
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.27 E-value=1.3e-05 Score=85.96 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=66.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM 452 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l 452 (856)
.|++++|.+++++..+.. +.. + +...+++++|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 456677777777665431 111 0 11146677777776654 3456667777777777
Q ss_pred HHHHHHCC----CC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 453 YKKMQAAG----LS-PDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCIP-NLVTYNIMIALQAKARNYQSALKL 522 (856)
Q Consensus 453 ~~~m~~~g----~~-pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~p-d~~ty~~Li~~~~~~g~~~~A~~l 522 (856)
|.+..+.. -. .-..+|+.+..+|.+.|++++|...|++..+. |-.. -..+|+.+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 77665421 00 01234555556666666666666666554321 1000 12344444445544 555555555
Q ss_pred HHHHH
Q 003028 523 YRDMQ 527 (856)
Q Consensus 523 l~~M~ 527 (856)
|++..
T Consensus 138 ~~~Al 142 (307)
T 2ifu_A 138 YQQAA 142 (307)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.27 E-value=9.4e-06 Score=79.09 Aligned_cols=162 Identities=10% Similarity=0.059 Sum_probs=111.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC-LG 476 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~-y~ 476 (856)
+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4455667778888888888888876543 4456778888888888888888888888876542 344433332212 12
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 003028 477 KAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEP-DKVTYSIVMEVLGHCGYLDEAE 555 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~p-d~~ty~~ll~a~~~~g~~~~A~ 555 (856)
..++..+|...|++..+... -+...+..+...+...|++++|+..|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233346777777776532 257778888888888888888888888887764332 2456777888888888888888
Q ss_pred HHHHHHHH
Q 003028 556 AVFAEMRR 563 (856)
Q Consensus 556 ~l~~~m~~ 563 (856)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.26 E-value=0.00016 Score=77.38 Aligned_cols=221 Identities=8% Similarity=0.009 Sum_probs=142.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hcc---
Q 003028 408 ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG--FLDVAMDMYKKMQAAGLSPDTFTYSVIINCL----GKA--- 478 (856)
Q Consensus 408 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g--~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y----~k~--- 478 (856)
....++|+++++++.... +-+...|+.--.++...+ ++++++++++.++... +-+..+|+.--..+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 344568888888887764 345566777777777777 8888888888888763 23455555433333 344
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 003028 479 GHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQ--SALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY------ 550 (856)
Q Consensus 479 g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~--~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~------ 550 (856)
++++++.++++.+.+...+ +-.+|+.-.-.+.+.|.++ ++++.++++.+... -|-..|+.-...+.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence 6788888888888776433 7777777777777777777 78888888877643 255566655555555555
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 551 LDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRK-AWEWYEAMLQAG--LRPNVPTCNSLLSAFLRVGQLSDAYHL 627 (856)
Q Consensus 551 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~-A~~l~~~m~~~g--~~pd~~t~n~Li~ay~~~g~~e~A~~l 627 (856)
++++.+.++.+..... -|...|+-+-..+.+.|+... +..+.+++.+.+ -..+...+..+...|.+.|+.++|+++
T Consensus 202 ~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 6666666666666542 366666666666666665333 344554443321 134566667777777777777777777
Q ss_pred HHHHHH
Q 003028 628 LQGMLN 633 (856)
Q Consensus 628 ~~~M~~ 633 (856)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777664
No 111
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.25 E-value=7.5e-06 Score=98.18 Aligned_cols=174 Identities=11% Similarity=-0.033 Sum_probs=115.9
Q ss_pred hhhChhHHHHHHHHHHH-----h-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003028 336 QLQDHTVALGFFNWLRR-----Q-AGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN 409 (856)
Q Consensus 336 ~l~~~~~Al~~f~~m~~-----~-~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g 409 (856)
..+++++|++.|+...+ . .....+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|.+.|
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcC
Confidence 34677788888877751 0 1112345567777777888888888888888777642 236667777777788888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003028 410 YLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFC 489 (856)
Q Consensus 410 ~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~ 489 (856)
++++|++.|++..+.. +-+...|..+..+|.+.|++++ ++.|++.++.. +-+...|..+..+|.+.|++++|.+.|+
T Consensus 482 ~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888777654 3356677777777777888877 77777777653 3356677777777777777777777777
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHHcCC
Q 003028 490 EMVNQGCIPN-LVTYNIMIALQAKARN 515 (856)
Q Consensus 490 ~m~~~g~~pd-~~ty~~Li~~~~~~g~ 515 (856)
+..+. .|+ ...|..+..++...++
T Consensus 559 ~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTT--STTHHHHHHHHHHHTC----
T ss_pred hhccc--CcccHHHHHHHHHHHHccCC
Confidence 76654 233 4556666666555444
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.25 E-value=7.9e-05 Score=78.96 Aligned_cols=162 Identities=9% Similarity=0.018 Sum_probs=99.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 003028 472 INCLGKAGHLQAAHQLFCEMVNQGC-IPNL----VTYNIMIALQAKARNYQSALKLYRDMQNAGFE-PD----KVTYSIV 541 (856)
Q Consensus 472 i~~y~k~g~~~~A~~lf~~m~~~g~-~pd~----~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~-pd----~~ty~~l 541 (856)
+..+...|++++|.++++...+... .|+. ..+..+...+...+++++|+..|++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777776665321 1121 12233555555666777777777777653221 22 2246667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 003028 542 MEVLGHCGYLDEAEAVFAEMRRK-----NWVP-DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA----GLRPN-VPTCNS 610 (856)
Q Consensus 542 l~a~~~~g~~~~A~~l~~~m~~~-----g~~p-d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~----g~~pd-~~t~n~ 610 (856)
...|...|++++|...|+.+.+. +..+ ...+|..+...|.+.|++++|...+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77777777777777777776631 1111 1236677777888888888888888776532 21222 567788
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHH
Q 003028 611 LLSAFLRVGQ-LSDAYHLLQGMLN 633 (856)
Q Consensus 611 Li~ay~~~g~-~e~A~~l~~~M~~ 633 (856)
+..+|.+.|+ +++|.+.|++.+.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888884 5888888877664
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.23 E-value=2.4e-05 Score=91.49 Aligned_cols=154 Identities=10% Similarity=-0.035 Sum_probs=114.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM 452 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l 452 (856)
.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.. +.+...|..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999887642 3357888899999999999999999999988764 44678888899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHc
Q 003028 453 YKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKA---RNYQSALKLYRDMQNA 529 (856)
Q Consensus 453 ~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~---g~~~~A~~ll~~M~~~ 529 (856)
|++..+.. +.+...+..+..+|.+.|++++|.+.|++..+... .+...+..+...+... |++++|.+.|++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998863 34678888899999999999999999998887633 2677888888999999 9999999999988876
Q ss_pred C
Q 003028 530 G 530 (856)
Q Consensus 530 g 530 (856)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 5
No 114
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.21 E-value=0.00046 Score=79.14 Aligned_cols=203 Identities=8% Similarity=-0.049 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 517 QSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAM 596 (856)
Q Consensus 517 ~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m 596 (856)
+.+..+|+++.... +.+...|...+.-+...|+.+.|..++++.... +.+...+. .|+...+.++ +++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~---~~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEA---VYGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTH---HHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhH---HHHHH
Confidence 34556666665532 233455655566666667777777777776665 22222211 1222111111 12222
Q ss_pred HHcC---------C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCcchHHHH
Q 003028 597 LQAG---------L---RPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTL--LLSCCTEARSPYDMGFC 662 (856)
Q Consensus 597 ~~~g---------~---~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~--Ll~a~~~~g~~~~a~~l 662 (856)
.+.- . ......|-..+..+.+.++.+.|..+|.+. ... ..+...|.. .+... ..++.+.|..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~-~~~d~~~ar~i 342 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY-ATGSRATPYNI 342 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH-HHCCSHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH-HCCChHHHHHH
Confidence 2110 0 001244666666666666777777777777 211 123333332 12211 12346677777
Q ss_pred HHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 003028 663 HELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQ 738 (856)
Q Consensus 663 ~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~ 738 (856)
++...+..+....++..... .....+..+.+..+++.+. ....+|..+++.=...|+.+.+..+++++..
T Consensus 343 fe~al~~~~~~~~~~~~yid-~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 343 FSSGLLKHPDSTLLKEEFFL-FLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHCTTCHHHHHHHHH-HHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77666544332222111000 0000112345566666652 2467899999988899999999999998875
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.19 E-value=8.6e-05 Score=73.94 Aligned_cols=127 Identities=10% Similarity=-0.014 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
+..+...+...|++++|...|++.. .|+...|..+...|.+.|++++|++.|++..... +.+...|..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4455666777788888888776653 4577777777778888888888888887776654 4456677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 443 AGFLDVAMDMYKKMQAAGLS--------------P-DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~--------------p-d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
.|++++|.+.|++..+.... | ....+..+..+|.+.|++++|.+.|+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 88888888888777764211 0 1256666677777777777777777777654
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.16 E-value=0.00012 Score=72.97 Aligned_cols=129 Identities=11% Similarity=-0.056 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
.+..+...+...|++++|++.|++.. .|+...|..+...|.+.|++++|++.|++..+.. +.+...|..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 35566777888999999999998873 6788899999999999999999999999998864 457788889999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003028 477 KAGHLQAAHQLFCEMVNQGCI--------------P-NLVTYNIMIALQAKARNYQSALKLYRDMQNAG 530 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~--------------p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g 530 (856)
..|++++|.+.|+...+.... | ....|..+...|.+.|++++|.+.|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999998875321 1 22678888899999999999999999988754
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.14 E-value=8.8e-05 Score=70.23 Aligned_cols=126 Identities=10% Similarity=0.013 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK 477 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k 477 (856)
|..+...+...|++++|...|++..... +.+..++..+..++...|++++|.+.+++..+.. +.+..++..+..+|..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 4444444555555555555555554432 2234445555555555555555555555555432 2244455555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHH
Q 003028 478 AGHLQAAHQLFCEMVNQGCIPNLVTYN--IMIALQAKARNYQSALKLYRDM 526 (856)
Q Consensus 478 ~g~~~~A~~lf~~m~~~g~~pd~~ty~--~Li~~~~~~g~~~~A~~ll~~M 526 (856)
.|++++|.+.|++..+.... +...+. .++..+...|++++|++.+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 55555555555555543211 222332 2222344555555555555543
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.13 E-value=0.00041 Score=73.38 Aligned_cols=163 Identities=9% Similarity=0.022 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--H
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNV------VTYNRLIHSYGRANYLNEALDVFKQMQVVGCE---PD--R 430 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~------~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~---pd--~ 430 (856)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|++.|++....... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556666677777777776666553211 11 11223344455556666666666665432111 11 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-C
Q 003028 431 VTYCTLIDIHAKAGFLDVAMDMYKKMQAA--GLSPD----TFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCIP-N 499 (856)
Q Consensus 431 ~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~--g~~pd----~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~p-d 499 (856)
.+|+.+...|...|++++|...|++..+. ..+.+ ..++..+...|.+.|++++|...|++..+. +... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 35555556666666666666666555421 01111 134455555555555555555555544321 0000 0
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 003028 500 LVTYNIMIALQAKARNYQSA-LKLYRD 525 (856)
Q Consensus 500 ~~ty~~Li~~~~~~g~~~~A-~~ll~~ 525 (856)
..+|..+...|.+.|++++| ...|++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33444445555555555555 443443
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.12 E-value=0.00011 Score=65.34 Aligned_cols=94 Identities=13% Similarity=0.205 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
.|..+...+...|++++|.++|+++.+.. +.+...|..+...+.+.|++++|..+|+++.... +.+..++..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 34444444444444444444444444321 1233334444444444444444444444443322 223333333333444
Q ss_pred HcCCHHHHHHHHHHHH
Q 003028 442 KAGFLDVAMDMYKKMQ 457 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~ 457 (856)
..|++++|...|+++.
T Consensus 89 ~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 89 KQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHH
Confidence 4444444444444333
No 120
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.11 E-value=1.2e-05 Score=76.51 Aligned_cols=84 Identities=10% Similarity=-0.088 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 433 YCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512 (856)
Q Consensus 433 y~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~ 512 (856)
+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|...|+...+.... +...|..+...|.+
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3334444444444444444444444432 123444444444444444444444444444433211 33344444444444
Q ss_pred cCCHHH
Q 003028 513 ARNYQS 518 (856)
Q Consensus 513 ~g~~~~ 518 (856)
.|++++
T Consensus 112 ~~~~~~ 117 (150)
T 4ga2_A 112 NDVTDG 117 (150)
T ss_dssp HCSSSS
T ss_pred cCChHH
Confidence 444443
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.09 E-value=0.0004 Score=73.45 Aligned_cols=160 Identities=9% Similarity=0.020 Sum_probs=83.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 003028 367 VGILGRARQFGAINKLLDQMVRDGC-QPNV----VTYNRLIHSYGRANYLNEALDVFKQMQVVGCE-PD----RVTYCTL 436 (856)
Q Consensus 367 i~~~~k~g~~~~A~~lf~~m~~~g~-~pd~----~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~-pd----~~ty~~L 436 (856)
+..+...|++++|..++++..+... .++. ..+..+...+...+++++|+..|++....... ++ ..+|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5566677777777777777665311 1111 12233455555566777777777766653211 12 2246666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 003028 437 IDIHAKAGFLDVAMDMYKKMQAA-----GLSPD-TFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCIPN-LVTYNI 505 (856)
Q Consensus 437 l~~~~k~g~~~~A~~l~~~m~~~-----g~~pd-~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~pd-~~ty~~ 505 (856)
...|...|++++|...|+++.+. +..+. ..+|..+...|.+.|++++|...+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666666531 11111 224455555566666666666655544321 11111 344555
Q ss_pred HHHHHHHcC-CHHHHHHHHHHH
Q 003028 506 MIALQAKAR-NYQSALKLYRDM 526 (856)
Q Consensus 506 Li~~~~~~g-~~~~A~~ll~~M 526 (856)
+...|.+.| .+++|++.|++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 555555555 345555555544
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.08 E-value=0.00014 Score=68.85 Aligned_cols=130 Identities=14% Similarity=0.045 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIH 440 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~ 440 (856)
..|..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|++.|++..... +.+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 467788888999999999999999988753 3478889999999999999999999999998764 55678899999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHHHH
Q 003028 441 AKAGFLDVAMDMYKKMQAAGLSPDTFTYS--VIINCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 441 ~k~g~~~~A~~l~~~m~~~g~~pd~~ty~--~Li~~y~k~g~~~~A~~lf~~m~~ 493 (856)
...|++++|...|++..+.. +.+...+. .+...+.+.|++++|.+.+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999998863 23455553 344447788999999998887643
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.08 E-value=0.00015 Score=64.56 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC 474 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~ 474 (856)
...|..+...+...|++++|.++|+++.... +.+..++..+...+.+.|++++|..+|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678888899999999999999999998764 4567888899999999999999999999998763 4578888999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 475 LGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKAR 514 (856)
Q Consensus 475 y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g 514 (856)
|...|++++|...|+++.+... .+...+..+...+...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcc
Confidence 9999999999999999887642 25566666666665543
No 124
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.08 E-value=0.0027 Score=72.67 Aligned_cols=83 Identities=7% Similarity=0.060 Sum_probs=48.2
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHH----hcCC
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQ-FGAINKLLDQMVRD-GCQ-PNVVTYNRLIHSYG----RANY 410 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~-~~~A~~lf~~m~~~-g~~-pd~~ty~~Li~~~~----~~g~ 410 (856)
++.+.|..+|+.... ..|++..|...+....+.+. .+....+|+..... |.. .+...|...+..+. .+++
T Consensus 28 ~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 456667777776654 23577777777776666653 34455666665542 322 35566666666543 2345
Q ss_pred HHHHHHHHHHHHH
Q 003028 411 LNEALDVFKQMQV 423 (856)
Q Consensus 411 ~~~A~~lf~~m~~ 423 (856)
++.+..+|++...
T Consensus 105 ~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 105 IEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 6667777777765
No 125
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.08 E-value=9.9e-06 Score=76.97 Aligned_cols=84 Identities=8% Similarity=0.099 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 364 TTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKA 443 (856)
Q Consensus 364 ~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~ 443 (856)
-.+..+|.+.|++++|.+.|++..+.. +-+...|..+..+|.+.|++++|+..|++..+.. +-+..+|..+...|.+.
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 334444555555555555555544431 1234445555555555555555555555544432 22344444444445555
Q ss_pred CCHHHH
Q 003028 444 GFLDVA 449 (856)
Q Consensus 444 g~~~~A 449 (856)
|++++|
T Consensus 113 ~~~~~a 118 (150)
T 4ga2_A 113 DVTDGR 118 (150)
T ss_dssp CSSSSH
T ss_pred CChHHH
Confidence 544433
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.03 E-value=4.3e-05 Score=75.26 Aligned_cols=156 Identities=14% Similarity=0.023 Sum_probs=88.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCh
Q 003028 477 KAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNA----GFEP-DKVTYSIVMEVLGHCGYL 551 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~----gi~p-d~~ty~~ll~a~~~~g~~ 551 (856)
..|++++|.++++.+... .......+..+...|...|++++|+..+++.... +..+ ....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644443321 1123445666666666666666666666655431 1111 133455556666667777
Q ss_pred HHHHHHHHHHHHc----CCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC
Q 003028 552 DEAEAVFAEMRRK----NWV--PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGL-RPN----VPTCNSLLSAFLRVGQ 620 (856)
Q Consensus 552 ~~A~~l~~~m~~~----g~~--pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~-~pd----~~t~n~Li~ay~~~g~ 620 (856)
++|...+.+..+. +.. .....+..+...+...|++++|...+++..+..- ..+ ..++..+...|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777665542 101 1134466667777777888888777777653200 112 2345677778888888
Q ss_pred HHHHHHHHHHHHH
Q 003028 621 LSDAYHLLQGMLN 633 (856)
Q Consensus 621 ~e~A~~l~~~M~~ 633 (856)
+++|.+.+++.++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877664
No 127
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.02 E-value=0.0014 Score=71.00 Aligned_cols=136 Identities=8% Similarity=0.034 Sum_probs=67.6
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRAR-QFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRA-N-YLNEAL 415 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g-~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~-g-~~~~A~ 415 (856)
....|+++++.+.... .-+..+|+.--.++...+ .+++++.+++.+.... +.+...|+.--..+.+. + ++++++
T Consensus 69 ~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 69 KSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3345666666665422 123445666555555555 3666666666666542 23555565555444444 4 556666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003028 416 DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLD--------VAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG 479 (856)
Q Consensus 416 ~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~--------~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g 479 (856)
++++++.+.. +.|-.+|+.-.-++.+.+.++ ++++.++++++.. +-|...|+-....+.+.+
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTST
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 6666665443 334555554444444444333 4444444444432 224444444444444433
No 128
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.01 E-value=5.5e-05 Score=74.47 Aligned_cols=155 Identities=13% Similarity=0.087 Sum_probs=80.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCH
Q 003028 372 RARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVV----GCE-PDRVTYCTLIDIHAKAGFL 446 (856)
Q Consensus 372 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~----g~~-pd~~ty~~Ll~~~~k~g~~ 446 (856)
..|++++|.++++.+... .......+..+...|...|++++|+..|++.... +.. ....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456677777744444321 1124456666666777777777777777666441 111 1234555566666666666
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCC
Q 003028 447 DVAMDMYKKMQAA----GLSP--DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCIP-NLVTYNIMIALQAKARN 515 (856)
Q Consensus 447 ~~A~~l~~~m~~~----g~~p--d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~p-d~~ty~~Li~~~~~~g~ 515 (856)
++|...+++..+. +-.+ ....+..+...|...|++++|...|++.... +... -..++..+...|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666665442 1011 1234455556666666666666666655421 1000 11233455555666666
Q ss_pred HHHHHHHHHHHH
Q 003028 516 YQSALKLYRDMQ 527 (856)
Q Consensus 516 ~~~A~~ll~~M~ 527 (856)
+++|.+.+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555443
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.00 E-value=0.00018 Score=76.25 Aligned_cols=127 Identities=8% Similarity=-0.003 Sum_probs=71.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHc---C-CCC--CHhhHH
Q 003028 506 MIALQAKARNYQSALKLYRDMQNAGF---EPD--KVTYSIVMEVLGHCGYLDEAEAVFAEMRRK---N-WVP--DEPVYG 574 (856)
Q Consensus 506 Li~~~~~~g~~~~A~~ll~~M~~~gi---~pd--~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~---g-~~p--d~~~y~ 574 (856)
+...+...|++++|+..|.+...... .+. ..+|+.+...|...|++++|...|++..+. . ..+ ...++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 33444455566666666555543211 111 235555555666666666666666655421 1 001 114666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 003028 575 LLVDLWGKAGNVRKAWEWYEAMLQAG----LRP-NVPTCNSLLSAFLRVGQLSDA-YHLLQGML 632 (856)
Q Consensus 575 ~Li~~~~k~g~~~~A~~l~~~m~~~g----~~p-d~~t~n~Li~ay~~~g~~e~A-~~l~~~M~ 632 (856)
.+...|.+.|++++|...+++..+.. ... -..+|..+...|.+.|++++| ...|++.+
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 67777777777777777777665321 111 155677777778888888887 66666654
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.98 E-value=0.00015 Score=65.04 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQ 422 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~ 422 (856)
+..+...+...|+++.|...|+...... +.+...|..+...|...|++++|.+.+++..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 73 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAI 73 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 3333344444444444444444433321 1233333333344444444444444444333
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.94 E-value=0.00021 Score=64.12 Aligned_cols=120 Identities=10% Similarity=0.058 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
+...|..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45667788888899999999999999987764 4567888888899999999999999999988763 346788888889
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNY 516 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~ 516 (856)
.|...|++++|.+.|++..+... .+...+..+...+.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 99999999999999998887632 2667788888888777764
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.93 E-value=0.00016 Score=65.42 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
...|..+...+.+.|++++|...|++..+.. +.+...|..+...|...|++++|++.|++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3344444444555555555555555444321 1234444444444444444444444444444332 2233344444444
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~ 458 (856)
+.+.|++++|.+.|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 4444444444444444433
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.90 E-value=0.0002 Score=64.76 Aligned_cols=119 Identities=7% Similarity=-0.054 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVII 472 (856)
Q Consensus 393 pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li 472 (856)
.+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 456778888888999999999999999887653 4467788888888889999999999999988763 34678888888
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 473 NCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKAR 514 (856)
Q Consensus 473 ~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g 514 (856)
.+|.+.|++++|.+.|++..+... -+...+..+...+...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 899999999999999998876532 24556677777776655
No 134
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.88 E-value=0.0032 Score=68.25 Aligned_cols=184 Identities=10% Similarity=0.051 Sum_probs=129.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN-YLNEALDVFKQMQVVGCEPDRVTYCTLIDIH 440 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g-~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~ 440 (856)
.++.+-..+.+....++|.++++.+.... +-+...|+.--..+...+ .+++++++++.+.... +-+..+|+.-..++
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 44444445555666678999999998763 336667887777777777 5999999999998765 55777888877777
Q ss_pred HHc-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 441 AKA-G-FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQ--------AAHQLFCEMVNQGCIPNLVTYNIMIALQ 510 (856)
Q Consensus 441 ~k~-g-~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~--------~A~~lf~~m~~~g~~pd~~ty~~Li~~~ 510 (856)
.+. + ++++++++++.+.+.. +-|-.+|+--...+.+.|.++ ++.+.++++.+..+. |...|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 776 6 8888999999888763 346777776555555555555 788888888776544 777888777777
Q ss_pred HHcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003028 511 AKARN-------YQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY 550 (856)
Q Consensus 511 ~~~g~-------~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~ 550 (856)
.+.+. ++++++.++++.... +-|...|+.+-..+.+.|.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 77665 677777777776653 2355666665555555554
No 135
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.88 E-value=0.0004 Score=63.63 Aligned_cols=96 Identities=9% Similarity=0.012 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
.|......|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45566667777777777777777766542 3356667777777777777777777777766654 445666667777777
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 003028 442 KAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~ 459 (856)
..|++++|++.|++.++.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 777777777777776664
No 136
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.86 E-value=0.0004 Score=63.65 Aligned_cols=96 Identities=11% Similarity=0.051 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
.|..+...|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.|++.++.. +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34455556666666666666666665543 3445556666666666666666666666665542 224555555556666
Q ss_pred ccCCHHHHHHHHHHHHHc
Q 003028 477 KAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~ 494 (856)
..|++++|.+.|+...+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 666666666666655543
No 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.85 E-value=0.00036 Score=75.78 Aligned_cols=129 Identities=8% Similarity=0.042 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN----------------VVTYNRLIHSYGRANYLNEALDVFKQMQV 423 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd----------------~~ty~~Li~~~~~~g~~~~A~~lf~~m~~ 423 (856)
...|..+...|.+.|++++|...|++..+.. |+ ...|..+..+|.+.|++++|+..|++..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4467788888889999999999999888753 33 46777777777777777777777777776
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH-HHHHHHHH
Q 003028 424 VGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAA-HQLFCEMV 492 (856)
Q Consensus 424 ~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A-~~lf~~m~ 492 (856)
.. +.+...|..+..+|...|++++|+..|++.++.. +-+..++..+..++.+.|+.++| .++|..|.
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 4456677777777777777777777777776652 33566666677777777777666 33455443
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.83 E-value=0.00019 Score=75.47 Aligned_cols=89 Identities=10% Similarity=0.070 Sum_probs=39.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhc
Q 003028 471 IINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD--KVTYSIVMEVLGHC 548 (856)
Q Consensus 471 Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd--~~ty~~ll~a~~~~ 548 (856)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+-.++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 4444555555555555555554332 222233334445555555555555554322210 000 11233344444444
Q ss_pred CChHHHHHHHHHHH
Q 003028 549 GYLDEAEAVFAEMR 562 (856)
Q Consensus 549 g~~~~A~~l~~~m~ 562 (856)
|++++|+..|++..
T Consensus 185 G~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 185 ALFTEAERRLTEAN 198 (282)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 55555555544444
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.82 E-value=0.00036 Score=75.76 Aligned_cols=146 Identities=11% Similarity=-0.028 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 464 DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVME 543 (856)
Q Consensus 464 d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~ 543 (856)
+...+..+...|.+.|++++|...|++..+....... + ..+.+.++- .+ ....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~~~-~~-------~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--F-----------SNEEAQKAQ-AL-------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--C-----------CSHHHHHHH-HH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc--C-----------ChHHHHHHH-HH-------HHHHHHHHHH
Confidence 4556666667777777777777777766654211100 0 000000000 00 0234555555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 544 VLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSD 623 (856)
Q Consensus 544 a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~ 623 (856)
+|.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+...+.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666665543 2245566666666777777777777777666542 3355666667777777777776
Q ss_pred H-HHHHHHHH
Q 003028 624 A-YHLLQGML 632 (856)
Q Consensus 624 A-~~l~~~M~ 632 (856)
| ..+|+.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6 34555554
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.81 E-value=0.00018 Score=69.53 Aligned_cols=118 Identities=15% Similarity=0.116 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCH--HHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI-HAKAGFL--DVA 449 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~-~~k~g~~--~~A 449 (856)
.|++++|...|+...+.. +.+...|..+...|...|++++|...|++..... +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344444544454444331 2244445555555555555555555555544432 2233444444444 4444554 555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003028 450 MDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 450 ~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~ 493 (856)
...|+++.+.. +.+...+..+...|...|++++|...|+...+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555554432 22344444455555555555555555555444
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.81 E-value=0.00015 Score=76.51 Aligned_cols=96 Identities=9% Similarity=-0.039 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 431 VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQ 510 (856)
Q Consensus 431 ~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~ 510 (856)
..+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|.+.++...+... -+...|..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 344455555555556666666555555542 22455555555566666666666666665554321 2445555666666
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 003028 511 AKARNYQSALKLYRDMQN 528 (856)
Q Consensus 511 ~~~g~~~~A~~ll~~M~~ 528 (856)
...|++++|+..|++..+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665543
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.81 E-value=0.00014 Score=70.25 Aligned_cols=122 Identities=7% Similarity=0.109 Sum_probs=85.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCH--H
Q 003028 406 GRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC-LGKAGHL--Q 482 (856)
Q Consensus 406 ~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~-y~k~g~~--~ 482 (856)
...|++++|+..|++..... +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777888887776654 4566777888888888888888888888877653 3356677777777 6677887 8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003028 483 AAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG 530 (856)
Q Consensus 483 ~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g 530 (856)
+|...|+...+... .+...|..+...|...|++++|+..|+++.+..
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888887776532 256677777778888888888888888777653
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.78 E-value=9.9e-05 Score=77.98 Aligned_cols=98 Identities=8% Similarity=-0.070 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|...+++.++.. +-+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45566667777777778888888777776653 3366777777778888888888888888777652 345677777888
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 003028 474 CLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~ 493 (856)
+|...|++++|...|+...+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888877665
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.73 E-value=0.001 Score=58.30 Aligned_cols=58 Identities=9% Similarity=0.009 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQM 421 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m 421 (856)
+..+...+...|++++|...|+...... +.+...|..+...|...|++++|...+++.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 64 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3333344444444444444444433321 113333333333344444444444444333
No 145
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.71 E-value=0.00042 Score=65.96 Aligned_cols=98 Identities=9% Similarity=-0.021 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|++.|++..+.. +-+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3456666677777788888888887777652 2356777777777777788888888877777654 3456677777777
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 003028 440 HAKAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~ 459 (856)
|.+.|++++|...|++.++.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777765
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.70 E-value=0.0014 Score=57.36 Aligned_cols=112 Identities=14% Similarity=0.036 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
....|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34567788888999999999999999988764 4577888888899999999999999999988863 346788888999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIA 508 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~ 508 (856)
+|...|++++|.+.|+...+.... +...+..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 114 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQN 114 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 999999999999999998875322 4445544433
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00095 Score=60.34 Aligned_cols=95 Identities=13% Similarity=0.012 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 537 TYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFL 616 (856)
Q Consensus 537 ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~ 616 (856)
.+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34445555666666666666666666543 2345666777777777777777777777776542 335667777777777
Q ss_pred HcCCHHHHHHHHHHHHH
Q 003028 617 RVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 617 ~~g~~e~A~~l~~~M~~ 633 (856)
..|++++|+..|++.++
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 77777777777777765
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.68 E-value=0.00055 Score=71.91 Aligned_cols=188 Identities=9% Similarity=-0.041 Sum_probs=104.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCC---------------
Q 003028 372 RARQFGAINKLLDQMVRDGCQPNVVTYNRL-------IHSYGRANYLNEALDVFKQMQVVGCEPD--------------- 429 (856)
Q Consensus 372 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~L-------i~~~~~~g~~~~A~~lf~~m~~~g~~pd--------------- 429 (856)
..++...|.+.|.+..+.. +-....|..+ ...+.+.++..+++..++.-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4566777777777766542 2245556555 2333333333344433333322 2221
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CH
Q 003028 430 -------RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIP--NL 500 (856)
Q Consensus 430 -------~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~p--d~ 500 (856)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .| ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1122344556667777777777777665543 333355555556777777777777776443321 11 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003028 501 VTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD--KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN 565 (856)
Q Consensus 501 ~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd--~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g 565 (856)
..+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455566777777777777777777764332243 2234445555667777777777777777653
No 149
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.65 E-value=0.00047 Score=65.61 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC 474 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~ 474 (856)
...|..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|++..+.. +-+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3455566666677777777777777776654 4456666666677777777777777777766653 2345566666666
Q ss_pred HHccCCHHHHHHHHHHHHHc
Q 003028 475 LGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 475 y~k~g~~~~A~~lf~~m~~~ 494 (856)
|.+.|++++|...|+...+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66677777777766666654
No 150
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.0027 Score=70.51 Aligned_cols=165 Identities=11% Similarity=0.077 Sum_probs=96.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHH----cCCCCC-HHH
Q 003028 433 YCTLIDIHAKAGFLDVAMDMYKKMQAAG-LSPDT----FTYSVIINCLGKAGHLQAAHQLFCEMVN----QGCIPN-LVT 502 (856)
Q Consensus 433 y~~Ll~~~~k~g~~~~A~~l~~~m~~~g-~~pd~----~ty~~Li~~y~k~g~~~~A~~lf~~m~~----~g~~pd-~~t 502 (856)
+..+...|.+.|++++|.+++..+...- ..++. .+.+.+-..+...|+++.|.+++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666666667766666666654320 01111 1222233334456677777777766543 222222 346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC-C-C--Hh
Q 003028 503 YNIMIALQAKARNYQSALKLYRDMQNA--GF--EPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRK--NWV-P-D--EP 571 (856)
Q Consensus 503 y~~Li~~~~~~g~~~~A~~ll~~M~~~--gi--~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~--g~~-p-d--~~ 571 (856)
+..|...|...|++++|..++.++... +. .+. ...+..++..|...|++++|..+++..... .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667778888888888888888776542 11 111 346667777777888888888887776542 111 1 1 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 572 VYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 572 ~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
.+..+...+...+++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45556666677788888877776654
No 151
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=0.0018 Score=59.55 Aligned_cols=98 Identities=11% Similarity=-0.036 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN----VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYC 434 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~ 434 (856)
+...+..+...+...|++++|...|++..+. .|+ ...|..+..+|...|++++|++.|++..+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 5566777777888888888888888887764 455 5667777777788888888888887776653 33566677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 435 TLIDIHAKAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 435 ~Ll~~~~k~g~~~~A~~l~~~m~~~ 459 (856)
.+..+|...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777777888887777777665
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.61 E-value=0.00028 Score=66.71 Aligned_cols=87 Identities=8% Similarity=-0.061 Sum_probs=32.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQ 517 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~ 517 (856)
..+.+.|++++|...|++.+... +.+...|..+..+|...|++++|...|++...... .+...|..+..+|...|+++
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 106 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQXGELA 106 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHH
Confidence 33333344444444444333321 12333333333334444444444444443333211 12233333333444444444
Q ss_pred HHHHHHHHH
Q 003028 518 SALKLYRDM 526 (856)
Q Consensus 518 ~A~~ll~~M 526 (856)
+|+..|+..
T Consensus 107 ~A~~~~~~a 115 (148)
T 2vgx_A 107 EAESGLFLA 115 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.0011 Score=59.86 Aligned_cols=92 Identities=8% Similarity=-0.021 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3333344444444444444444443321 1233344444444444444444444444443332 2223333334444444
Q ss_pred cCCHHHHHHHHHHH
Q 003028 443 AGFLDVAMDMYKKM 456 (856)
Q Consensus 443 ~g~~~~A~~l~~~m 456 (856)
.|++++|...|++.
T Consensus 85 ~~~~~~A~~~~~~a 98 (126)
T 3upv_A 85 VKEYASALETLDAA 98 (126)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHH
Confidence 44444444444433
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.61 E-value=0.001 Score=65.57 Aligned_cols=121 Identities=10% Similarity=0.029 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPN----------------VVTYNRLIHSYGRANYLNEALDVFKQMQVVG 425 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd----------------~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g 425 (856)
.+..+...+.+.|++++|...|++..+..- .+ ...|..+..+|.+.|++++|+..|++.....
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 455666677777888888888877775311 11 1455555556666666666666666655542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003028 426 CEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAH 485 (856)
Q Consensus 426 ~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~ 485 (856)
+.+...|..+..+|...|++++|.+.|++..+.. +-+..++..+..++...++.+++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555566666666666665555442 224444555555554444444443
No 155
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.60 E-value=0.00063 Score=60.96 Aligned_cols=58 Identities=10% Similarity=0.049 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQM 421 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m 421 (856)
|..+...+...|++++|...|+...+.. +.+...|..+...|...|++++|...|++.
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344444444444444444444444321 123334444444444444444444444444
No 156
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.0023 Score=71.03 Aligned_cols=195 Identities=8% Similarity=-0.061 Sum_probs=133.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC----------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCH-
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSP----------------DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG-CIPNL- 500 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~p----------------d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g-~~pd~- 500 (856)
.+.+.|++++|++.|.++++..... ....+..|...|.+.|++++|.+++..+...- ..++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 3455566666666666665532110 01246778899999999999999998876431 11122
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC---C
Q 003028 501 ---VTYNIMIALQAKARNYQSALKLYRDMQN----AGFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRK--NW---V 567 (856)
Q Consensus 501 ---~ty~~Li~~~~~~g~~~~A~~ll~~M~~----~gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~--g~---~ 567 (856)
...+.+-..+...|++++|.+++..... .+..+. ..++..+...+...|++++|..+++++... +. .
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 1223333444457899999999987653 333333 456778889999999999999999987753 11 1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 568 PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA--GLRPN----VPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 568 pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~--g~~pd----~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
....++..++..|...|++++|..++++.... .+..+ ...+..+...+...|++++|...|.+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12457888899999999999999999887632 12111 34567777788889999999998887764
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.59 E-value=0.00098 Score=65.74 Aligned_cols=151 Identities=13% Similarity=-0.027 Sum_probs=78.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---------------
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDR--------------- 430 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--------------- 430 (856)
.+......|+++.+.+.++.-... .......|..+...+.+.|++++|++.|++..... +.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ------------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHH
Confidence 333444455555555555422211 01134456667777888888888888888887642 1121
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 431 -VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIAL 509 (856)
Q Consensus 431 -~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~ 509 (856)
..|..+..+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|.+.|++..+... -+...+..+...
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 165 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHH
Confidence 455566666666666666666666666542 23455566666666666666666666666554421 144455555555
Q ss_pred HHHcCCHHHHH
Q 003028 510 QAKARNYQSAL 520 (856)
Q Consensus 510 ~~~~g~~~~A~ 520 (856)
+...++.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 55555444444
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.58 E-value=0.00074 Score=60.48 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGL--SPD----TFTY 468 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~--~pd----~~ty 468 (856)
...|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++...... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3567778888889999999999999887764 45677888888889999999999999988876531 122 6778
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 469 SVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQA 511 (856)
Q Consensus 469 ~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~ 511 (856)
..+..+|...|++++|.+.|+...+.. |+...+..+.....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 888888999999999999999888753 46655555554443
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.57 E-value=0.00056 Score=59.49 Aligned_cols=90 Identities=11% Similarity=0.004 Sum_probs=35.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcc
Q 003028 401 LIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSP--DTFTYSVIINCLGKA 478 (856)
Q Consensus 401 Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~p--d~~ty~~Li~~y~k~ 478 (856)
+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|.+.|++..+.. +. +...+..+..+|.+.
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHH
Confidence 3333344444444444444433322 2223333334444444444444444444443321 11 233344444444444
Q ss_pred -CCHHHHHHHHHHHH
Q 003028 479 -GHLQAAHQLFCEMV 492 (856)
Q Consensus 479 -g~~~~A~~lf~~m~ 492 (856)
|++++|.+.|+...
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 90 EGKEVEAEIAEARAK 104 (112)
T ss_dssp SSCSHHHHHHHHHHG
T ss_pred hCCHHHHHHHHHHHh
Confidence 44444444444433
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.55 E-value=0.0018 Score=59.03 Aligned_cols=98 Identities=10% Similarity=0.031 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
+...|..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34455555555666666666666666555432 2244555555555555566666665555555443 234445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~ 458 (856)
+|...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555543
No 161
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.55 E-value=0.001 Score=62.69 Aligned_cols=95 Identities=7% Similarity=-0.061 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
.+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|++.|++..... +.+...|..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 44455555666666666666666665532 2355556666666666666666666666665543 334455555566666
Q ss_pred HcCCHHHHHHHHHHHHH
Q 003028 442 KAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~ 458 (856)
..|++++|.+.|++.++
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665554
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.53 E-value=0.0012 Score=61.38 Aligned_cols=96 Identities=11% Similarity=0.028 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
.+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|+..|++..... +.+...|..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34445555666666666666666666542 2355566666666666666666666666666543 334555556666666
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 003028 442 KAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~ 459 (856)
..|++++|.+.|+..++.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666665543
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.52 E-value=0.0018 Score=59.04 Aligned_cols=98 Identities=8% Similarity=-0.070 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
+...|..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45555666666666666666666666655543 3345555555666666666666666666655542 224455555555
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 003028 474 CLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~ 493 (856)
+|...|++++|...|+...+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555666555555555443
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.51 E-value=0.0021 Score=61.22 Aligned_cols=99 Identities=12% Similarity=0.053 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
+...|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567777788888888888888888887653 3367778888888888888888888888887764 445777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 003028 439 IHAKAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~ 459 (856)
+|...|++++|.+.|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888887765
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.51 E-value=0.002 Score=61.28 Aligned_cols=99 Identities=7% Similarity=0.015 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
+...|..+...|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++.++.. +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777888888888888888888887764 4467788888888888888888888888888763 335778888888
Q ss_pred HHHccCCHHHHHHHHHHHHHc
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~ 494 (856)
+|...|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888887764
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.50 E-value=0.023 Score=61.09 Aligned_cols=54 Identities=9% Similarity=-0.037 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCCCCH
Q 003028 584 GNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRV-----------GQLSDAYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 584 g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~-----------g~~e~A~~l~~~M~~~g~~Pd~ 640 (856)
+.++++.+.++...... +-|...|+.+-..+.+. +.++++++.++++++ +.||.
T Consensus 207 ~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~ 271 (331)
T 3dss_A 207 NVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN 271 (331)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc
Confidence 34567777777766542 44666666554444444 457788888888887 45664
No 167
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.50 E-value=0.00067 Score=63.05 Aligned_cols=131 Identities=16% Similarity=0.117 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CC-CCHhh
Q 003028 503 YNIMIALQAKARNYQSALKLYRDMQNAGFE-PD----KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN----WV-PDEPV 572 (856)
Q Consensus 503 y~~Li~~~~~~g~~~~A~~ll~~M~~~gi~-pd----~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g----~~-pd~~~ 572 (856)
+..+...|...|++++|+..+++..+.... .+ ...+..+...+...|++++|...++...+.. .. ....+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444555555555555444321100 01 1234444455555555555555555544321 00 01334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 573 YGLLVDLWGKAGNVRKAWEWYEAMLQA----GLR-PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 573 y~~Li~~~~k~g~~~~A~~l~~~m~~~----g~~-pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+..+...|...|++++|...+++..+. +.. .....+..+...|...|++++|.+.+++.++
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 556666666777777777777665532 100 1134566777777788888888888777664
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=0.0025 Score=58.53 Aligned_cols=98 Identities=17% Similarity=0.036 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD----RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYS 469 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~ 469 (856)
+...|..+...+...|++++|++.|++..+. .|+ ...|..+..+|...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 5566677777777777777777777777654 344 4566666666677777777777777666542 22455666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 470 VIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 470 ~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
.+..+|...|++++|.+.|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666666666666666553
No 169
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.46 E-value=0.0014 Score=61.00 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
.+..+...+.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|+..|++.+... +.+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 33444455555566666666665555443 3344555555555555566666666555555542 223444555555555
Q ss_pred ccCCHHHHHHHHHHHHH
Q 003028 477 KAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~ 493 (856)
..|++++|.+.|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555443
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.46 E-value=0.00089 Score=58.15 Aligned_cols=99 Identities=11% Similarity=-0.003 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEP--DRVTYCTLI 437 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p--d~~ty~~Ll 437 (856)
...|..+...+.+.|++++|...|+...+.. +.+...|..+...|...|++++|.+.|++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3467778888999999999999999988763 3467888899999999999999999999998764 33 578889999
Q ss_pred HHHHHc-CCHHHHHHHHHHHHHCC
Q 003028 438 DIHAKA-GFLDVAMDMYKKMQAAG 460 (856)
Q Consensus 438 ~~~~k~-g~~~~A~~l~~~m~~~g 460 (856)
.++.+. |++++|.+.+++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999 99999999999988764
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.46 E-value=0.00084 Score=62.37 Aligned_cols=96 Identities=13% Similarity=-0.010 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC-CCHH
Q 003028 432 TYCTLIDIHAKAGFLDVAMDMYKKMQAAGL-SPD----TFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCI-PNLV 501 (856)
Q Consensus 432 ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~-~pd----~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~-pd~~ 501 (856)
++..+...+...|++++|.+.+++..+... ..+ ..++..+...|...|++++|.+.+++..+. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344444444445555555554444432100 000 223344444455555555555555444321 000 0122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 502 TYNIMIALQAKARNYQSALKLYRDMQ 527 (856)
Q Consensus 502 ty~~Li~~~~~~g~~~~A~~ll~~M~ 527 (856)
.+..+...|...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444455555555555555555443
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.44 E-value=0.0021 Score=58.67 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQ 422 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~ 422 (856)
++..+...+.+.|++++|...|++..+.. +-+...|+.+..+|.+.|++++|++.|++..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444455555555554444431 1234444444444444444444444444443
No 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.42 E-value=0.0022 Score=58.60 Aligned_cols=101 Identities=11% Similarity=0.086 Sum_probs=49.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHH
Q 003028 540 IVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG--LRPN----VPTCNSLLS 613 (856)
Q Consensus 540 ~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g--~~pd----~~t~n~Li~ 613 (856)
.+-..+.+.|++++|...|++..+.. +-+...|..+..+|.+.|++++|...|++..+.. ..++ ..+|..+..
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34444444445555555554444432 1234444555555555555555555555444311 0111 124555566
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003028 614 AFLRVGQLSDAYHLLQGMLNLGLKPSLQTY 643 (856)
Q Consensus 614 ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty 643 (856)
+|...|++++|++.|++.+. ..||..+.
T Consensus 92 ~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 66666777777776666665 34554433
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.36 E-value=0.052 Score=58.30 Aligned_cols=148 Identities=8% Similarity=0.067 Sum_probs=90.1
Q ss_pred HHHHHHHHH---HhcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCC
Q 003028 362 TYTTMVGIL---GRARQFG-AINKLLDQMVRDGCQPNVVTYNRLIHSYGRANY----------LNEALDVFKQMQVVGCE 427 (856)
Q Consensus 362 ~y~~Li~~~---~k~g~~~-~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~----------~~~A~~lf~~m~~~g~~ 427 (856)
.|..+.+.+ .+.|.+. +|..+++.+...+ +-+...|+.--..+...+. +++++.+++.+.... +
T Consensus 28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-P 105 (331)
T 3dss_A 28 LYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-P 105 (331)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-C
Confidence 455554433 3455554 7888888888743 2244556543333322222 567777777776654 4
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 428 PDRVTYCTLIDIHAKAG--FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH-LQAAHQLFCEMVNQGCIPNLVTYN 504 (856)
Q Consensus 428 pd~~ty~~Ll~~~~k~g--~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~-~~~A~~lf~~m~~~g~~pd~~ty~ 504 (856)
-+..+|+.-..++.+.+ .+++++.+++.+.+.. +-|-.+|+--...+...|. ++++.+.++.+.+..+. |...|+
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~ 183 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWH 183 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHH
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHH
Confidence 56667776666666666 3677777777777763 3466666666666666666 57777777777765443 666776
Q ss_pred HHHHHHHHc
Q 003028 505 IMIALQAKA 513 (856)
Q Consensus 505 ~Li~~~~~~ 513 (856)
.....+.+.
T Consensus 184 ~R~~ll~~l 192 (331)
T 3dss_A 184 YRSCLLPQL 192 (331)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 665555444
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.22 E-value=0.0029 Score=57.29 Aligned_cols=93 Identities=6% Similarity=-0.002 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 364 TTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKA 443 (856)
Q Consensus 364 ~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~ 443 (856)
..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.. +-+...+..+..+|.+.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344555666677777777777666542 2356666666666777777777777776666553 33455666666666666
Q ss_pred CCHHHHHHHHHHHHH
Q 003028 444 GFLDVAMDMYKKMQA 458 (856)
Q Consensus 444 g~~~~A~~l~~~m~~ 458 (856)
|++++|+..|++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777766666654
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.21 E-value=0.0077 Score=54.01 Aligned_cols=91 Identities=14% Similarity=0.005 Sum_probs=58.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 003028 541 VMEVLGHCGYLDEAEAVFAEMRRKNWVPDE---PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN---VPTCNSLLSA 614 (856)
Q Consensus 541 ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~---~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd---~~t~n~Li~a 614 (856)
+...+...|++++|...|+.+.+.... +. ..+..+..+|.+.|++++|...|+...+.. +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 444555667777777777766654311 22 355666667777777777777777776542 122 5566677777
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 003028 615 FLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 615 y~~~g~~e~A~~l~~~M~~ 633 (856)
|...|++++|...|+++++
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777776
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.20 E-value=0.008 Score=53.90 Aligned_cols=92 Identities=11% Similarity=-0.033 Sum_probs=49.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNV---VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD---RVTYCTLIDI 439 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~---~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd---~~ty~~Ll~~ 439 (856)
+...+.+.|++++|...|+.+.+.. +.+. ..+..+..+|.+.|++++|...|++..... +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 3445555666666666666665532 1112 345555555666666666666666655442 112 3445555555
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 003028 440 HAKAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~ 459 (856)
+.+.|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55666666666666655554
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.18 E-value=0.0031 Score=57.06 Aligned_cols=90 Identities=12% Similarity=-0.034 Sum_probs=43.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 003028 401 LIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH 480 (856)
Q Consensus 401 Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~ 480 (856)
+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++.++.. +-+...+..+..+|...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3344445555555555555554432 2244444445555555555555555555554432 1234444444455555555
Q ss_pred HHHHHHHHHHHH
Q 003028 481 LQAAHQLFCEMV 492 (856)
Q Consensus 481 ~~~A~~lf~~m~ 492 (856)
+++|...|++..
T Consensus 101 ~~~A~~~~~~al 112 (121)
T 1hxi_A 101 ANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.16 E-value=0.004 Score=70.54 Aligned_cols=138 Identities=9% Similarity=-0.098 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
...|..+...|.+.|++++|...|++..+.. |+...+ ..+...+ ... .....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~-~~~-------~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESKA-SES-------FLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHHH-HHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHHH-HHH-------HHHHHHHHHHHH
Confidence 4567777777888888888888888776531 221000 0000000 000 012344444455
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSA 519 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A 519 (856)
|.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|...|++..+... -+...|..+..++.+.++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554432 22444455555555555555555555555544321 1333444455555555554444
Q ss_pred H
Q 003028 520 L 520 (856)
Q Consensus 520 ~ 520 (856)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 3
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.12 E-value=0.0051 Score=69.65 Aligned_cols=128 Identities=8% Similarity=-0.026 Sum_probs=71.2
Q ss_pred HHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003028 334 LKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNE 413 (856)
Q Consensus 334 L~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 413 (856)
+...+++..|+..|....+.....++. .-+...+ +.. .....|..+..+|.+.|++++
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------~~~~~~~----~~~----~~~~~~~nla~~~~~~g~~~~ 335 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWLEMEYGL--------------SEKESKA----SES----FLLAAFLNLAMCYLKLREYTK 335 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSC--------------CHHHHHH----HHH----HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccC--------------ChHHHHH----HHH----HHHHHHHHHHHHHHHhcCHHH
Confidence 334579999999999887643322220 0001000 110 123445666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003028 414 ALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAH 485 (856)
Q Consensus 414 A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~ 485 (856)
|+..|++..+.. +.+...|..+..+|...|++++|+..|++.++.. +-+...+..+..++.+.++.+++.
T Consensus 336 A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 336 AVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666543 3355666666666666777777777776666542 223445555666666666665554
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.11 E-value=0.0014 Score=74.90 Aligned_cols=118 Identities=11% Similarity=0.023 Sum_probs=69.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003028 404 SYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA 483 (856)
Q Consensus 404 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~ 483 (856)
.|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+.. +.+..+|..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3455666666666666665543 3345666666666667777777777777666652 2355666666677777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 003028 484 AHQLFCEMVNQGCIPNLVTYNIMIAL--QAKARNYQSALKLYR 524 (856)
Q Consensus 484 A~~lf~~m~~~g~~pd~~ty~~Li~~--~~~~g~~~~A~~ll~ 524 (856)
|.+.|++..+.... +...+..+..+ +.+.|++++|+++++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777766654211 23344444433 666677777777766
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.06 E-value=0.0058 Score=57.86 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=59.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 003028 569 DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQ-TYTLLL 647 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~-ty~~Ll 647 (856)
+..+|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|+..|++.++ +.|+.. .....+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l 138 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREM 138 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHH
Confidence 34577888888889999999999998888753 45678888899999999999999999998887 456654 444333
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.02 E-value=0.0013 Score=58.89 Aligned_cols=85 Identities=13% Similarity=0.044 Sum_probs=58.5
Q ss_pred cCChHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 548 CGYLDEAEAVFAEMRRKN--WVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAY 625 (856)
Q Consensus 548 ~g~~~~A~~l~~~m~~~g--~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~ 625 (856)
.|++++|...|++..+.+ -+.+...+..+...|.+.|++++|...|++..+.. +-+...+..+..+|...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 467777777777777643 12245567777777788888888888888877653 345677777888888888888888
Q ss_pred HHHHHHHH
Q 003028 626 HLLQGMLN 633 (856)
Q Consensus 626 ~l~~~M~~ 633 (856)
..|++.++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887776
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.01 E-value=0.0066 Score=66.68 Aligned_cols=138 Identities=7% Similarity=-0.053 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
...|..+...+.+.|++++|...|++..+. .+.. ......+++.+ . -+.+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~~~-------~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADGAK-------L-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHHGG-------G-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHHHH-------H-HHHHHHHHHHHHHH
Confidence 456777788888888888888888777651 0000 00000000000 0 01123445555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSA 519 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A 519 (856)
|.+.|++++|++.+++.++.. +.+...|..+..+|...|++++|.+.|++..+... -+...+..+...+...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555432 22445555555555555555555555555544321 1334444444444444444443
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.98 E-value=0.0062 Score=66.95 Aligned_cols=91 Identities=10% Similarity=-0.016 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++|++.|++..+.. +-+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34566777777777777777777777777653 3356677777777777778888877777777652 235566666666
Q ss_pred HHHccCCHHHHHH
Q 003028 474 CLGKAGHLQAAHQ 486 (856)
Q Consensus 474 ~y~k~g~~~~A~~ 486 (856)
++.+.++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.97 E-value=0.0015 Score=58.40 Aligned_cols=85 Identities=9% Similarity=0.003 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 373 ARQFGAINKLLDQMVRDG--CQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAM 450 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g--~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~ 450 (856)
.|++++|...|++..+.+ -+.+...|..+..+|.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 344555555555555432 01123344555555555555555555555555443 233445555555555555555555
Q ss_pred HHHHHHHH
Q 003028 451 DMYKKMQA 458 (856)
Q Consensus 451 ~l~~~m~~ 458 (856)
..|++.++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.96 E-value=0.0019 Score=73.61 Aligned_cols=121 Identities=14% Similarity=0.073 Sum_probs=89.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF 445 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~ 445 (856)
+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3445567888999999998888752 3357888888899999999999999999888764 4567788888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINC--LGKAGHLQAAHQLFC 489 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~--y~k~g~~~~A~~lf~ 489 (856)
+++|++.|++..+... -+...+..+..+ +.+.|++++|.++++
T Consensus 90 ~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999998887632 233444444444 778888999988887
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.86 E-value=0.015 Score=54.92 Aligned_cols=62 Identities=11% Similarity=-0.001 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003028 431 VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 431 ~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~ 493 (856)
..|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+....
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 344445555555555555555555555442 22344555555555555555555555555444
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.70 E-value=0.016 Score=53.60 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHH
Q 003028 514 RNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGK----AGNVRKA 589 (856)
Q Consensus 514 g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k----~g~~~~A 589 (856)
+++++|++.|++..+.| .++.. |-..|...+..++|.+.|+...+.| +...+..|-..|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35566777777766665 23322 4444555566666777777776654 45666666666766 6777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 003028 590 WEWYEAMLQAGLRPNVPTCNSLLSAFLR----VGQLSDAYHLLQGMLNLG 635 (856)
Q Consensus 590 ~~l~~~m~~~g~~pd~~t~n~Li~ay~~----~g~~e~A~~l~~~M~~~g 635 (856)
.++|++..+.| +...+..|...|.. .++.++|++.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777654 56667777777777 677777777777777655
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.69 E-value=0.0036 Score=67.85 Aligned_cols=146 Identities=9% Similarity=0.009 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
.+..+...+.+.|++++|...|+..... .|+... +...++.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3556666677777888888877776653 233321 112222333322211 125566666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCHHHHH
Q 003028 442 KAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIAL-QAKARNYQSAL 520 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~-~~~~g~~~~A~ 520 (856)
+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+.... +...+..|... ....+..+++.
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666642 235666666667777777777777777666543211 33344444433 22345556666
Q ss_pred HHHHHHHH
Q 003028 521 KLYRDMQN 528 (856)
Q Consensus 521 ~ll~~M~~ 528 (856)
.+|..|..
T Consensus 320 ~~~~~~l~ 327 (338)
T 2if4_A 320 EMYKGIFK 327 (338)
T ss_dssp --------
T ss_pred HHHHHhhC
Confidence 66666654
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.68 E-value=0.006 Score=69.56 Aligned_cols=124 Identities=12% Similarity=0.017 Sum_probs=70.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CC-CHHHHHH
Q 003028 370 LGRARQFGAINKLLDQMVRDG---CQP----NVVTYNRLIHSYGRANYLNEALDVFKQMQVV-----GC-EP-DRVTYCT 435 (856)
Q Consensus 370 ~~k~g~~~~A~~lf~~m~~~g---~~p----d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~-----g~-~p-d~~ty~~ 435 (856)
+...|++++|+.++++..+.. +.+ ...+++.|...|...|++++|+.++++..+. |- .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446778888888777665421 112 2346777777777778877777777766431 21 11 2345667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003028 436 LIDIHAKAGFLDVAMDMYKKMQAA-----GLS-PD-TFTYSVIINCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 436 Ll~~~~k~g~~~~A~~l~~~m~~~-----g~~-pd-~~ty~~Li~~y~k~g~~~~A~~lf~~m~~ 493 (856)
|...|...|++++|+.+|++..+. |.. |+ ..+.+.|-.++...+.+++|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777665432 211 11 22233334444455555555555555543
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.68 E-value=0.012 Score=67.15 Aligned_cols=133 Identities=8% Similarity=-0.082 Sum_probs=96.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCCCH-HHHH
Q 003028 579 LWGKAGNVRKAWEWYEAMLQA---GLRP----NVPTCNSLLSAFLRVGQLSDAYHLLQGMLN-----LG-LKPSL-QTYT 644 (856)
Q Consensus 579 ~~~k~g~~~~A~~l~~~m~~~---g~~p----d~~t~n~Li~ay~~~g~~e~A~~l~~~M~~-----~g-~~Pd~-~ty~ 644 (856)
.+...|++++|+.++++..+. -+.+ ...+++.|...|...|++++|+.++++.++ .| -.|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999988887642 1222 246789999999999999999999988775 12 22333 6778
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCC
Q 003028 645 LLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSG 724 (856)
Q Consensus 645 ~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G 724 (856)
.|-..|...|++++|+.++++. ..+++.....+......+.+.|..++...|
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~A----------------------------l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKA----------------------------YAILLVTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH----------------------------HHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH----------------------------HHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 8888899999999988766443 233333333333334556778888999999
Q ss_pred ChhHHHHHHHHHHhC
Q 003028 725 LKEEAGSVWEVAAQK 739 (856)
Q Consensus 725 ~~eeA~~lf~~m~~~ 739 (856)
++++|..++.++.+.
T Consensus 450 ~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 450 MFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999764
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.58 E-value=0.005 Score=66.68 Aligned_cols=146 Identities=14% Similarity=0.031 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
.|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3556677788999999999999998764 344332 222333344332221 137888899999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHhcCChHHH
Q 003028 477 KAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD-KVTYSIVMEV-LGHCGYLDEA 554 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a-~~~~g~~~~A 554 (856)
+.|++++|...|+...+... .+...|..+..+|...|++++|+..|++..+. .|+ ...+..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887632 36789999999999999999999999988654 344 3344444443 2345677888
Q ss_pred HHHHHHHHHc
Q 003028 555 EAVFAEMRRK 564 (856)
Q Consensus 555 ~~l~~~m~~~ 564 (856)
..+|..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8899888764
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.53 E-value=0.026 Score=53.69 Aligned_cols=95 Identities=11% Similarity=-0.037 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPN--------V-----VTYNRLIHSYGRANYLNEALDVFKQMQVV---- 424 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd--------~-----~ty~~Li~~~~~~g~~~~A~~lf~~m~~~---- 424 (856)
.+......+.+.|++++|...|+...+. .|+ . ..|+.+-.++.+.|++++|+..|++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3455556666777777777777777653 233 2 25666666666666666666666666553
Q ss_pred -CCCC-CHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 425 -GCEP-DRVTY----CTLIDIHAKAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 425 -g~~p-d~~ty----~~Ll~~~~k~g~~~~A~~l~~~m~~ 458 (856)
.+.| +...| ...-.++...|++++|+..|++.++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0123 23344 5555555566666666666655543
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.53 E-value=0.097 Score=60.79 Aligned_cols=172 Identities=9% Similarity=0.049 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 003028 376 FGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANY----------LNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG- 444 (856)
Q Consensus 376 ~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~----------~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g- 444 (856)
-++|.+.++.+.... +-+...|+.--.++...++ +++++++++++.+.. +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 355666666666542 2244555554444444444 677777777776654 445666666666666677
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---------
Q 003028 445 -FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG-HLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKA--------- 513 (856)
Q Consensus 445 -~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g-~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~--------- 513 (856)
+++++++.++++.+.. +-+-.+|+--...+.+.| .++++.+.++++.+..+. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 5577777777777764 336666766666666666 677777777777765443 667777666665553
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 003028 514 -----RNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLD 552 (856)
Q Consensus 514 -----g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~ 552 (856)
+.++++++.+++..... +-|...|..+-..+.+.++.+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 45678888888777653 224556666666666665533
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.39 E-value=0.081 Score=50.27 Aligned_cols=62 Identities=13% Similarity=0.042 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 572 VYGLLVDLWGKAGNVRKAWEWYEAMLQA-----GLRPN-VPTC----NSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 572 ~y~~Li~~~~k~g~~~~A~~l~~~m~~~-----g~~pd-~~t~----n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....+|...|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777777777777777777663 11454 4567 7888888889999999998888875
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.37 E-value=0.15 Score=59.14 Aligned_cols=135 Identities=8% Similarity=0.047 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 003028 409 NYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF----------LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKA 478 (856)
Q Consensus 409 g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~----------~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~ 478 (856)
...++|++.++++.... +-+...|+.--.++.+.|+ ++++++.++++.+.. +-+..+|+.-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34567888888887764 3445567666666666666 788888888887763 34667777766777777
Q ss_pred C--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003028 479 G--HLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKAR-NYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGH 547 (856)
Q Consensus 479 g--~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g-~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~ 547 (856)
+ +++++.+.++.+.+.... +..+|+.-...+.+.| .++++++.++++.+..+ -|...|+.....+.+
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQ 190 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHh
Confidence 7 668888888888776443 6777777777777777 77778887777766532 245566655555444
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.35 E-value=0.082 Score=48.74 Aligned_cols=14 Identities=29% Similarity=0.164 Sum_probs=5.5
Q ss_pred CCHHHHHHHHHHHH
Q 003028 444 GFLDVAMDMYKKMQ 457 (856)
Q Consensus 444 g~~~~A~~l~~~m~ 457 (856)
+++++|++.|++..
T Consensus 75 ~d~~~A~~~~~~Aa 88 (138)
T 1klx_A 75 KDLRKAAQYYSKAC 88 (138)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 33333333333333
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.022 Score=49.28 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=51.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003028 569 DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS 639 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd 639 (856)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.|++.++ +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCC
Confidence 34566677777888888888888888877652 44677788888888888888888888888886 3454
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0034 Score=54.67 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQ 422 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~ 422 (856)
.|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.|++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33444444444444444444444444321 1233344444444444444444444444443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.13 E-value=0.052 Score=44.92 Aligned_cols=58 Identities=9% Similarity=0.193 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQM 421 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m 421 (856)
|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.|++.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333334444444444444444433321 112333333333344444444444444333
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.12 E-value=0.035 Score=48.88 Aligned_cols=79 Identities=11% Similarity=0.009 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 553 EAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGML 632 (856)
Q Consensus 553 ~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~ 632 (856)
+|...|+...+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++.+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666543 2356677777778888888888888888877653 3456777888888888888888888888776
Q ss_pred H
Q 003028 633 N 633 (856)
Q Consensus 633 ~ 633 (856)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 203
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.08 E-value=0.23 Score=59.65 Aligned_cols=99 Identities=13% Similarity=0.181 Sum_probs=51.0
Q ss_pred HHhcCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 370 LGRARQFGAINK-LLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDV 448 (856)
Q Consensus 370 ~~k~g~~~~A~~-lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~ 448 (856)
....+++++|.+ ++..+ ++......++..+.+.|.+++|+++.+... .-+......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence 345667777665 44111 112223556666666777777666553211 11233445566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003028 449 AMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMV 492 (856)
Q Consensus 449 A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~ 492 (856)
|.++.+.+ .+...|..|...+.+.|+++.|++.|..+.
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 66654332 245556666666666666666655555543
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.05 E-value=0.07 Score=44.10 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 35677888889999999999999999988764 4567888899999999999999999999998863 346777777777
Q ss_pred HHHccC
Q 003028 474 CLGKAG 479 (856)
Q Consensus 474 ~y~k~g 479 (856)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 766543
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.00 E-value=0.037 Score=48.72 Aligned_cols=61 Identities=13% Similarity=0.038 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKM 456 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m 456 (856)
...|..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334444444444444444444444443332 222333344444444444444444444433
No 206
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.67 E-value=0.24 Score=59.62 Aligned_cols=153 Identities=10% Similarity=0.176 Sum_probs=100.5
Q ss_pred HHHhcCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 003028 404 SYGRANYLNEALD-VFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQ 482 (856)
Q Consensus 404 ~~~~~g~~~~A~~-lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~ 482 (856)
.....+++++|.+ ++..+ ++......++..+.+.|.+++|+++.++-. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 3345788888877 55221 112233677788888899998887764221 1134456789999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003028 483 AAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMR 562 (856)
Q Consensus 483 ~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~ 562 (856)
+|.++.+.+ .+...|..|...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 998886554 3678899999999999999999999988753 3455555666777776666655555
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003028 563 RKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEA 595 (856)
Q Consensus 563 ~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~ 595 (856)
..| -++....+|.+.|++++|.+++.+
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 543 234445556666666666665443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.50 E-value=0.05 Score=46.87 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=47.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 569 DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+...+..+...|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|++.|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777777888888888888888877653 33566777788888888888888888877765
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.48 E-value=0.032 Score=52.96 Aligned_cols=99 Identities=11% Similarity=0.070 Sum_probs=63.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 549 GYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGN----------VRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRV 618 (856)
Q Consensus 549 g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~----------~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~ 618 (856)
+.+++|.+.++...+.. +-+...|..+-.++...++ +++|...|++..+.. +.+...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 33445555555544433 2244444444444444443 568888888887743 33567788888888776
Q ss_pred C-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 619 G-----------QLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCT 651 (856)
Q Consensus 619 g-----------~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~ 651 (856)
| ++++|++.|++.++ +.|+...|...+..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 4 89999999999987 6788887777766553
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.38 E-value=0.079 Score=45.59 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 396 VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKM 456 (856)
Q Consensus 396 ~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m 456 (856)
..|..+...|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444444443332 222333444444444444444444444443
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.00 E-value=0.064 Score=50.91 Aligned_cols=72 Identities=10% Similarity=-0.035 Sum_probs=35.3
Q ss_pred HHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 334 LKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFG----------AINKLLDQMVRDGCQPNVVTYNRLIH 403 (856)
Q Consensus 334 L~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~----------~A~~lf~~m~~~g~~pd~~ty~~Li~ 403 (856)
..+++.++.|++.++...+..+ .+...|..+..++...++++ +|...|++..+.. +-+...|..+-.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P--~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 3445556666666666654322 24455555555665555433 4555555444431 113344444444
Q ss_pred HHHhc
Q 003028 404 SYGRA 408 (856)
Q Consensus 404 ~~~~~ 408 (856)
+|...
T Consensus 89 ay~~l 93 (158)
T 1zu2_A 89 AYTSF 93 (158)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.82 E-value=0.48 Score=51.24 Aligned_cols=76 Identities=12% Similarity=0.040 Sum_probs=63.6
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003028 567 VPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLL 646 (856)
Q Consensus 567 ~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~L 646 (856)
..+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|.+... +.|...||...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 4577788888777777899999999999999864 8888888888889999999999999999887 67888776544
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.58 E-value=0.15 Score=57.02 Aligned_cols=92 Identities=14% Similarity=0.064 Sum_probs=68.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC---CCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHH
Q 003028 542 MEVLGHCGYLDEAEAVFAEMRRKN---WVP----DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA-----G-LRP-NVPT 607 (856)
Q Consensus 542 l~a~~~~g~~~~A~~l~~~m~~~g---~~p----d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~-----g-~~p-d~~t 607 (856)
+..+...|++++|+.++++..+.. +.+ ...+++.|...|...|++++|+.++++..+. | ..| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556788888888888887531 111 2457888888899999999999988877642 1 112 2457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 608 CNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 608 ~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
++.|...|...|++++|+.++++.++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999988764
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.44 E-value=0.081 Score=59.18 Aligned_cols=87 Identities=8% Similarity=0.011 Sum_probs=63.6
Q ss_pred hcCChHHHHHHHHHHHHc--C-CCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHH
Q 003028 547 HCGYLDEAEAVFAEMRRK--N-WVP----DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA-----G-LRPN-VPTCNSLL 612 (856)
Q Consensus 547 ~~g~~~~A~~l~~~m~~~--g-~~p----d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~-----g-~~pd-~~t~n~Li 612 (856)
..|++++|+.++++..+. . +-| ...+++.|..+|...|++++|+.++++..+. | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 347788888888876652 1 111 2467888888898999999999888887641 2 1222 45688899
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 003028 613 SAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 613 ~ay~~~g~~e~A~~l~~~M~~ 633 (856)
..|...|++++|+.++++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.25 E-value=0.2 Score=55.99 Aligned_cols=94 Identities=6% Similarity=-0.119 Sum_probs=69.1
Q ss_pred HcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCccc
Q 003028 617 RVGQLSDAYHLLQGMLN---LGLKPS----LQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQN 689 (856)
Q Consensus 617 ~~g~~e~A~~l~~~M~~---~g~~Pd----~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~ 689 (856)
..|++++|+.++++.++ .-+.|+ ..+++.|..+|...|++++|+.+++...
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL---------------------- 367 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII---------------------- 367 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH----------------------
Confidence 35789999999988775 223444 3678888899999999999988765543
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 003028 690 VRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQ 738 (856)
Q Consensus 690 ~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~ 738 (856)
.+.+.....+.......++.|...|..+|++++|+.++++..+
T Consensus 368 ------~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 368 ------KPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp ------HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 2233333233333456789999999999999999999998764
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.24 E-value=0.36 Score=53.89 Aligned_cols=99 Identities=10% Similarity=0.061 Sum_probs=73.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCC
Q 003028 612 LSAFLRVGQLSDAYHLLQGMLNL---GLKPS----LQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPG 684 (856)
Q Consensus 612 i~ay~~~g~~e~A~~l~~~M~~~---g~~Pd----~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~ 684 (856)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|+.++++..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L----------------- 356 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM----------------- 356 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-----------------
Confidence 45567889999999999999862 23344 3678888889999999999988765543
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 003028 685 PDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQ 738 (856)
Q Consensus 685 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~ 738 (856)
.+.+.............++.|...|...|++++|+.++++..+
T Consensus 357 -----------~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 357 -----------EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp -----------HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2233333222333456788999999999999999999998764
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.22 E-value=0.67 Score=50.14 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 462 SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYS 539 (856)
Q Consensus 462 ~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~ 539 (856)
+.+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++.... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5577777777777777788888888888887764 67777777777788888888888888877764 45555654
No 217
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.15 E-value=2.3 Score=40.81 Aligned_cols=131 Identities=11% Similarity=0.083 Sum_probs=85.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF 445 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~ 445 (856)
-.+.....|+++.|.++.+++ .+...|..|-......|+++-|.+.|++... +..+.-.|.-.|+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 445567788888888887665 3677888888888888888888888888753 4455566667788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRD 525 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 525 (856)
.+...++-+.....| -++.....+.-.|+++++.++|.+.-. .|.. +......|..+.|.++..+
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHH
Confidence 777776666555543 245555566667888888877754322 1111 1111225566666666655
Q ss_pred H
Q 003028 526 M 526 (856)
Q Consensus 526 M 526 (856)
+
T Consensus 141 ~ 141 (177)
T 3mkq_B 141 A 141 (177)
T ss_dssp T
T ss_pred h
Confidence 4
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.27 E-value=3 Score=40.04 Aligned_cols=99 Identities=11% Similarity=0.094 Sum_probs=43.9
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003028 476 GKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAE 555 (856)
Q Consensus 476 ~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~ 555 (856)
..+|+++.|.++.+.+ -+...|..|-......|+++-|.+.|....+ |..+.-.|...|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3445555555544443 1344455555555555555555555544331 222333333444444444
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003028 556 AVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEA 595 (856)
Q Consensus 556 ~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~ 595 (856)
++-+.....| -++.....+...|+++++.++|.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333322 134444444445555555555433
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.24 E-value=0.45 Score=39.99 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQ 422 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~ 422 (856)
.|..+..+|...|++++|++.|++..
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333344444444444444444433
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=92.76 E-value=0.29 Score=41.23 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=39.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003028 402 IHSYGRANYLNEALDVFKQMQVVGCEPDRV-TYCTLIDIHAKAGFLDVAMDMYKKMQAAG 460 (856)
Q Consensus 402 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~-ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g 460 (856)
...+.+.|++++|++.|++..+.. +.+.. .|..+..+|...|++++|.+.|++.++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345566777777777777776653 33455 67777777777777777777777777653
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.91 E-value=1.3 Score=41.58 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 003028 551 LDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAG---NVRKAWEWYEAMLQAGLRP--NVPTCNSLLSAFLRVGQLSDAY 625 (856)
Q Consensus 551 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g---~~~~A~~l~~~m~~~g~~p--d~~t~n~Li~ay~~~g~~e~A~ 625 (856)
+..+++-|.+..+.+. ++..+...+..++++.+ +++++..+|+++.+.. .| +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4556666666666554 67888888888888888 6668999999888754 23 3556667778889999999999
Q ss_pred HHHHHHHHCCCCCCH
Q 003028 626 HLLQGMLNLGLKPSL 640 (856)
Q Consensus 626 ~l~~~M~~~g~~Pd~ 640 (856)
+.++.+++ +.|+.
T Consensus 92 ~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHh--cCCCC
Confidence 99999987 56764
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.33 E-value=7.1 Score=35.61 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003028 537 TYSIVMEVLGHCGYLDEAEAVFAEMRRKN 565 (856)
Q Consensus 537 ty~~ll~a~~~~g~~~~A~~l~~~m~~~g 565 (856)
....+..+|.+.|+..++.+++.+..+.|
T Consensus 127 ~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 127 ILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33333444444444444444444444333
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.62 E-value=1.8 Score=37.21 Aligned_cols=69 Identities=20% Similarity=0.151 Sum_probs=44.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003028 570 EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG------LRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 570 ~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g------~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~ 640 (856)
..-+..|...+.+.++++.|...|+...+.- -.+....+..|..+|.+.|++++|+.++++.++ +.|+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 3445556666667777777777776655421 123456677777777778888888877777776 45554
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.29 E-value=8.4 Score=35.14 Aligned_cols=137 Identities=10% Similarity=0.014 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM 452 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l 452 (856)
.|.+++..++..+.... -+..-||.+|.-....-+-+-..++++.+-+. .|.. ..|++..+...
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHHHH
Confidence 35555555655555542 34555555555544444444444444444221 1111 12233333322
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003028 453 YKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGF 531 (856)
Q Consensus 453 ~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi 531 (856)
+-.+ ..+....+..++.+...|+-|.-.+++..+.. +.+|+....-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 84 ~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 2221 11233344444555555555555555555322 1233444444555555555555555555555555543
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.22 E-value=1.5 Score=37.24 Aligned_cols=65 Identities=9% Similarity=-0.065 Sum_probs=40.6
Q ss_pred CHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 569 DEPVYGLLVDLWGKAGN---VRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNL 634 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~---~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~ 634 (856)
+...+..+..++...++ .++|..+|++..... +-++..+..+...+.+.|++++|+..|+++++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44555555555543333 567777777766542 345566666667777777777777777777763
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.20 E-value=3 Score=35.32 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=7.1
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 003028 403 HSYGRANYLNEALDVFKQM 421 (856)
Q Consensus 403 ~~~~~~g~~~~A~~lf~~m 421 (856)
..+.+.|++++|+..|+++
T Consensus 51 ~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 51 NDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 3333333333333333333
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=87.75 E-value=4.9 Score=41.83 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCH
Q 003028 376 FGAINKLLDQMVRDGCQPN---VVTYNRLIHSYGR-----ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKA-GFL 446 (856)
Q Consensus 376 ~~~A~~lf~~m~~~g~~pd---~~ty~~Li~~~~~-----~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~-g~~ 446 (856)
...|..++++..+. .|+ -..|..|...|.+ -|+.++|.++|++..+..-.-+..++..+...++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566666666653 455 4467777777777 378888888888877764222466777777777774 778
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHH
Q 003028 447 DVAMDMYKKMQAAGLS--PDTFTYSV 470 (856)
Q Consensus 447 ~~A~~l~~~m~~~g~~--pd~~ty~~ 470 (856)
+++.+.+++.+..... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888887776554 55444443
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=87.53 E-value=5.1 Score=34.28 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDG------CQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVV 424 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g------~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~ 424 (856)
+...+-.|...+.+.+++..|...|+...+.- -.+....+..|..+|.+.|++++|+.++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455566666666777777766666655421 0123455666666666666666666666666553
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=86.17 E-value=4.9 Score=37.55 Aligned_cols=80 Identities=10% Similarity=0.059 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 378 AINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN---YLNEALDVFKQMQVVGCEP--DRVTYCTLIDIHAKAGFLDVAMDM 452 (856)
Q Consensus 378 ~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g---~~~~A~~lf~~m~~~g~~p--d~~ty~~Ll~~~~k~g~~~~A~~l 452 (856)
.+++-|.+....+. ++..+.-.+..++++.+ ++++++.+|++..+.. .| ....+-.|.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444444332 45555555555666655 4446666666655543 12 233344444455666666666666
Q ss_pred HHHHHHC
Q 003028 453 YKKMQAA 459 (856)
Q Consensus 453 ~~~m~~~ 459 (856)
++.+++.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666553
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=83.59 E-value=9.4 Score=39.67 Aligned_cols=123 Identities=11% Similarity=0.014 Sum_probs=86.7
Q ss_pred HHHHHHHHH-HHHhc--C------CHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHH
Q 003028 395 VVTYNRLIH-SYGRA--N------YLNEALDVFKQMQVVGCEPD---RVTYCTLIDIHAKA-----GFLDVAMDMYKKMQ 457 (856)
Q Consensus 395 ~~ty~~Li~-~~~~~--g------~~~~A~~lf~~m~~~g~~pd---~~ty~~Ll~~~~k~-----g~~~~A~~l~~~m~ 457 (856)
...|..++. .++.. | ....|..++++..+. .|+ -..|..+...|.+. |+.++|.+.|++.+
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL 231 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT 231 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH
Confidence 445666554 34443 3 246777777777765 455 56888899999984 99999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 458 AAGLSPDTFTYSVIINCLGKA-GHLQAAHQLFCEMVNQGCI--PNLVTYNIMIALQAKARNYQSALKLYRDMQ 527 (856)
Q Consensus 458 ~~g~~pd~~ty~~Li~~y~k~-g~~~~A~~lf~~m~~~g~~--pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 527 (856)
+....-+..++......++.. |+.+++.+.+++....... |+....|.+-. .+|..++.++.
T Consensus 232 ~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q--------~eA~~LL~~~~ 296 (301)
T 3u64_A 232 RYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQ--------KRARWLKAHVQ 296 (301)
T ss_dssp HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHH--------HHHHHHHHTHH
T ss_pred HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHH--------HHHHHHHHHhH
Confidence 864322478888888888885 9999999999999987655 66555554432 35555555443
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=81.71 E-value=15 Score=34.11 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003028 479 GHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEP 533 (856)
Q Consensus 479 g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~p 533 (856)
+++++|.++|+.+.+.+-.. ...|......-.+.|+...|.+++......+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56666666666665442222 4455555555556666666666666666555443
No 232
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.44 E-value=44 Score=36.88 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC--HHH
Q 003028 539 SIVMEVLGHCGYLDEAEAVFAEMRRK--NWVPD---EPVYGLLVDLWGKAGNVRKAWEWYEAMLQ----AGLRPN--VPT 607 (856)
Q Consensus 539 ~~ll~a~~~~g~~~~A~~l~~~m~~~--g~~pd---~~~y~~Li~~~~k~g~~~~A~~l~~~m~~----~g~~pd--~~t 607 (856)
..|...+...|++.+|..++..+... +.... ...|...+..|...+++..|..++.+... ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34556666777777777777776532 21111 34566667778888888888888877642 111222 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 608 CNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 608 ~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+..++..+...+++.+|...|.+..+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 66677777788888888887777654
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=80.67 E-value=6.1 Score=35.60 Aligned_cols=86 Identities=14% Similarity=0.073 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHH
Q 003028 550 YLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRK---AWEWYEAMLQAGLRP--NVPTCNSLLSAFLRVGQLSDA 624 (856)
Q Consensus 550 ~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~---A~~l~~~m~~~g~~p--d~~t~n~Li~ay~~~g~~e~A 624 (856)
.+..+++-|......+. ++..+-..+..++.+..+... +..+++++...+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34444555554444343 556666666666666665554 666666665532 12 223334456667777777777
Q ss_pred HHHHHHHHHCCCCCC
Q 003028 625 YHLLQGMLNLGLKPS 639 (856)
Q Consensus 625 ~~l~~~M~~~g~~Pd 639 (856)
.+.++.+++ +.|+
T Consensus 94 ~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHH--HCTT
T ss_pred HHHHHHHHH--hCCC
Confidence 777777776 4554
No 234
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.00 E-value=88 Score=34.45 Aligned_cols=51 Identities=16% Similarity=0.317 Sum_probs=35.0
Q ss_pred hChhHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 338 QDHTVALGFFNWLRRQA----GFKHDEHTYTTMVGILGRARQFGAINKLLDQMVR 388 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~----g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~ 388 (856)
+++..|++.+..+.++. ....+......++..|.+.++++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35556666665555432 2344566788899999999999998887776654
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=77.62 E-value=17 Score=33.84 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=47.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003028 583 AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSC 649 (856)
Q Consensus 583 ~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a 649 (856)
.+|+++|.++|+.+....-+- ...|-....-=.++|+++.|.+++.+.+..+.+|. ..+.+.|.-
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~n 137 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALRN 137 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHHh
Confidence 378888888888887553222 77777777777889999999999999998765554 444444444
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=77.60 E-value=9.1 Score=45.40 Aligned_cols=29 Identities=0% Similarity=0.056 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHccCC-HHHHHHHHHHHHHc
Q 003028 466 FTYSVIINCLGKAGH-LQAAHQLFCEMVNQ 494 (856)
Q Consensus 466 ~ty~~Li~~y~k~g~-~~~A~~lf~~m~~~ 494 (856)
.....|+..+...++ ++.|..+|+++...
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~ 278 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKK 278 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhh
Confidence 344556666666666 58889999988876
No 237
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.59 E-value=73 Score=33.31 Aligned_cols=166 Identities=13% Similarity=0.039 Sum_probs=87.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHCCCCCCHHHHHHHHH
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMD----MYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~----l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
|.++..-|.+.+++++|++++..-- ..+.+.|+...|-+ +.+-+.+.+++++.....-|+.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455566777778888877765432 12334455444443 3444555677777777777777
Q ss_pred HHHccCCHH-HHHHHHHHHHH----cCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 474 CLGKAGHLQ-AAHQLFCEMVN----QGC--IPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLG 546 (856)
Q Consensus 474 ~y~k~g~~~-~A~~lf~~m~~----~g~--~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~ 546 (856)
.+.....-+ .=.++++.+.+ .|- .-+......+...|.+.+++.+|...|-. |-.-|...+..++--+.
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHH
Confidence 666543211 12333333332 221 12566677777888888888887766531 11112334444444333
Q ss_pred hc---CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 547 HC---GYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 547 ~~---g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
.. |...++ |...-.+++ .|.-.+++..|..+|+...
T Consensus 177 ~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 177 CQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 32 322221 111112222 3445678888888777665
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=76.45 E-value=15 Score=39.89 Aligned_cols=71 Identities=8% Similarity=0.078 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQA-----AGLSPDTFTYS 469 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~-----~g~~pd~~ty~ 469 (856)
...++..+...|++++|+..+..+.... +-+...|..+|.+|.+.|+..+|++.|+.+.+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3345555666666666666666665443 44555666666666666666666666665533 36666655443
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=76.01 E-value=13 Score=44.11 Aligned_cols=126 Identities=10% Similarity=0.089 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcC-CHHHHHHHHHHHHHc------CCCC-CH-
Q 003028 363 YTTMVGILGRARQ-FGAINKLLDQMVRDGCQPNVVTY--NRLIHSYGRAN-YLNEALDVFKQMQVV------GCEP-DR- 430 (856)
Q Consensus 363 y~~Li~~~~k~g~-~~~A~~lf~~m~~~g~~pd~~ty--~~Li~~~~~~g-~~~~A~~lf~~m~~~------g~~p-d~- 430 (856)
...++..+.-.++ .+.|..+|+++... .|...++ ..+|..+.+.+ +--+|..++.+..+. ...+ +.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3445555555555 47788888888765 3432222 23333332222 233444444433211 1111 11
Q ss_pred ---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003028 431 ---------VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEM 491 (856)
Q Consensus 431 ---------~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m 491 (856)
...+.-...|...|+++.|+++-++.... .+.+-.+|..|..+|.+.|+++.|+-.+..+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222234456778888888888888775 3445778888888888888888888877766
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=75.42 E-value=9.1 Score=34.44 Aligned_cols=20 Identities=5% Similarity=-0.039 Sum_probs=8.7
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 003028 474 CLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~ 493 (856)
++.+.|++++|.+.++.+.+
T Consensus 83 g~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 34444444444444444443
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=75.17 E-value=11 Score=41.12 Aligned_cols=73 Identities=7% Similarity=0.023 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 003028 432 TYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVN-----QGCIPNLVTYNI 505 (856)
Q Consensus 432 ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~-----~g~~pd~~ty~~ 505 (856)
+...++..+...|++++|...+..+... -+.+...|..+|.+|.+.|+..+|.+.|+.+.. .|+.|+..+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3455778888999999999999998876 456889999999999999999999999998754 489998876543
No 242
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=73.84 E-value=3.8 Score=33.87 Aligned_cols=72 Identities=24% Similarity=0.351 Sum_probs=41.4
Q ss_pred eeccccccchhhHHHHHHHHHHHHHHHHH-----cCCCCCceeeeeeccccCCcccchHHHHHHHHHHhhcCCCCcccCC
Q 003028 755 LINLHVMSDGTAVIALSRTLAWFRKQMLI-----SGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHMFSFPFFTENG 829 (856)
Q Consensus 755 ~~~~~~l~~g~a~~g~~~~l~~~~~~m~~-----~g~~Pd~it~i~~l~~~~~~~~~~~l~~a~~~ll~~~~~pf~~~~~ 829 (856)
.+|+|.|....|... +..|..+... .| ...+.+|+|.|.+|. .+.+.++.++..+|.... +.+...
T Consensus 2 ~lDLHGl~v~eA~~~----l~~~l~~~~~~~~~~~g--~~~v~II~GkG~hS~-~g~~~Lk~~V~~~L~~~~--~~~~e~ 72 (82)
T 3fau_A 2 SLDLHGLHVDEALEH----LMRVLEKKTEEFKQNGG--KPYLSVITGRGNHSQ-GGVARIKPAVIKYLISHS--FRFSEI 72 (82)
T ss_dssp CEECTTSCHHHHHHH----HHHHHHHHHHHHHHHCC--CCEEEEECCC----------CHHHHHHHHHHHTT--CCEEEE
T ss_pred eEECCCCcHHHHHHH----HHHHHHHHHHHhhccCC--ceEEEEEECCCCCCC-CCcchHHHHHHHHHHhCC--CceeeC
Confidence 367787776665544 3344444443 45 346889999888765 233459999999998654 444455
Q ss_pred CceEEE
Q 003028 830 NSGCFV 835 (856)
Q Consensus 830 ~~gc~v 835 (856)
+.|+++
T Consensus 73 n~G~l~ 78 (82)
T 3fau_A 73 KPGCLK 78 (82)
T ss_dssp ETTEEE
T ss_pred CCEEEE
Confidence 778775
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.30 E-value=27 Score=43.73 Aligned_cols=149 Identities=11% Similarity=0.017 Sum_probs=97.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC------------------
Q 003028 400 RLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGL------------------ 461 (856)
Q Consensus 400 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~------------------ 461 (856)
.++..+.+.+..+.|.++.... +.+....-.+..+|...|++++|.+.|++.-. |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 4556666677777666654332 33444444556677778888888888865421 11
Q ss_pred -----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003028 462 -----SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPN----LVTYNIMIALQAKARNYQSALKLYRDMQNAGFE 532 (856)
Q Consensus 462 -----~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~ 532 (856)
..-..-|.-++..|-+.+.++.+.++-....+....-+ ...|..+..++...|++++|...+-.+.....+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 11123467788888899998888887776554321112 125788899999999999999999888776544
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHH
Q 003028 533 PDKVTYSIVMEVLGHCGYLDEAEA 556 (856)
Q Consensus 533 pd~~ty~~ll~a~~~~g~~~~A~~ 556 (856)
......|+..+|..|..+.-..
T Consensus 971 --~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 971 --KSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp --HHHHHHHHHHHHHHCCHHHHHH
T ss_pred --HHHHHHHHHHHHhCCChhhhhC
Confidence 3456667777777777665544
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=71.28 E-value=1.9e+02 Score=35.11 Aligned_cols=20 Identities=10% Similarity=0.146 Sum_probs=9.4
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 003028 579 LWGKAGNVRKAWEWYEAMLQ 598 (856)
Q Consensus 579 ~~~k~g~~~~A~~l~~~m~~ 598 (856)
+|+..|+.....++++.+.+
T Consensus 569 AyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhcc
Confidence 34444554444445554443
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=70.12 E-value=24 Score=30.34 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 553 EAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 553 ~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
+..+-+..+....+.|++.+..+.+.+|-+.+++..|.++|+.++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444445555555555555555555555555555544
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.56 E-value=52 Score=41.16 Aligned_cols=143 Identities=11% Similarity=0.000 Sum_probs=86.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------------------
Q 003028 506 MIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWV------------------ 567 (856)
Q Consensus 506 Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~------------------ 567 (856)
++..+.+.+.++-+.++..-. +-+....-.+..+|...|++++|.+.|.+... ++.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 445555666666555543321 22333333345566777888888877765421 110
Q ss_pred -----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003028 568 -----PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN----VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKP 638 (856)
Q Consensus 568 -----pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd----~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~P 638 (856)
.-..-|..++..+-+.+.++.+.++-....+..-.-+ ...|..++.++...|++++|...+-.+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 0112366777788888888888877766654322122 125788888888889999998888877764433
Q ss_pred CHHHHHHHHHHHHhcCCc
Q 003028 639 SLQTYTLLLSCCTEARSP 656 (856)
Q Consensus 639 d~~ty~~Ll~a~~~~g~~ 656 (856)
...+..|+..+++.+..
T Consensus 971 -~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCH
T ss_pred -HHHHHHHHHHHHhCCCh
Confidence 45566666666666653
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=64.19 E-value=1.5e+02 Score=31.28 Aligned_cols=166 Identities=13% Similarity=0.104 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHH
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM----YKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l----~~~m~~~g~~pd~~ty~~Li~ 473 (856)
|.++..-|.+.+++++|++++..-- ..+.+.|+...|-++ ++-+.+.++++|.....-|+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3444555677777777777654331 123334444433333 344445566677766666666
Q ss_pred HHHccCCHH-HHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 474 CLGKAGHLQ-AAHQLFCEMVNQ----G--CIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLG 546 (856)
Q Consensus 474 ~y~k~g~~~-~A~~lf~~m~~~----g--~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~ 546 (856)
.+.....-+ .=.++++++.+. | ..=|......+...|.+.+++.+|...|- .|-.+....|..++--+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHH
Confidence 665554311 112333333321 2 12245556667777888888888777662 233333345555544443
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 547 HCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 547 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
..+...+ .|...-.+++ -|.-.+++..|..+|+...
T Consensus 179 ~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 179 KQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 3332211 1222222333 3555677777777766655
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=62.54 E-value=35 Score=30.93 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 554 AEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 554 A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
..+-++.+....+.|++.+..+.+.+|-+.+|+..|.++|+.++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333444444444555555555555555555555555555444
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=61.82 E-value=42 Score=28.87 Aligned_cols=44 Identities=5% Similarity=-0.004 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 414 ALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQ 457 (856)
Q Consensus 414 A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~ 457 (856)
..+-++.+....+.|++....+.+.+|-+.+++..|..+|+-++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333344344444444444444444444444444444444443
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=60.88 E-value=1.9e+02 Score=31.29 Aligned_cols=164 Identities=9% Similarity=0.048 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHH---
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRD-GCQP---NVVTYNRLIHSYGRA-NYLNEALDVFKQMQVVGCEPDRVTY--- 433 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~-g~~p---d~~ty~~Li~~~~~~-g~~~~A~~lf~~m~~~g~~pd~~ty--- 433 (856)
+...|...|.+.|+.++..+++...... +.-+ .......||..+... +..+.-.++..+..++. .-...+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4556778888888888888777665421 0001 233445666666553 23333333333333221 0111222
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHH
Q 003028 434 ---CTLIDIHAKAGFLDVAMDMYKKMQAAGLSPD-----TFTYSVIINCLGKAGHLQAAHQLFCEMVNQ--GCIPNLVTY 503 (856)
Q Consensus 434 ---~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd-----~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~--g~~pd~~ty 503 (856)
.-+...|...|++.+|.+++.++.+.--..| ..+|-.-+.+|...+++.++...+...... .+.++...-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 1456777777777777777777765311111 233444556677777777777777655432 111222222
Q ss_pred HH--HH--HHHH-HcCCHHHHHHHHHHH
Q 003028 504 NI--MI--ALQA-KARNYQSALKLYRDM 526 (856)
Q Consensus 504 ~~--Li--~~~~-~~g~~~~A~~ll~~M 526 (856)
.. +. ..+. ..++|.+|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 11 11 1233 456777766666544
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=58.03 E-value=38 Score=29.04 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=59.0
Q ss_pred hhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
.+.+++|..+-+|+..+.+ ...+--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++..
T Consensus 20 ~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 3678899999999986422 22222223445667899999988876553 688888888765 56788888888
Q ss_pred HHHHHHHcCCCCCHHHH
Q 003028 417 VFKQMQVVGCEPDRVTY 433 (856)
Q Consensus 417 lf~~m~~~g~~pd~~ty 433 (856)
.+.++...| .|....|
T Consensus 91 rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 91 RLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCC-CHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 877776665 4444444
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=57.67 E-value=1.8e+02 Score=30.23 Aligned_cols=111 Identities=14% Similarity=0.080 Sum_probs=58.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHH
Q 003028 468 YSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKL----YRDMQNAGFEPDKVTYSIVME 543 (856)
Q Consensus 468 y~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l----l~~M~~~gi~pd~~ty~~ll~ 543 (856)
|.++..=|.+.+++++|.+++..-. ..+.+.|+...|-++ ++-..+.+++++.....-++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4444555666677777766654432 123444555444333 344445566666666666666
Q ss_pred HHHhcCChH-HHHHHHHHHHH----cC--CCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 003028 544 VLGHCGYLD-EAEAVFAEMRR----KN--WVPDEPVYGLLVDLWGKAGNVRKAWEWY 593 (856)
Q Consensus 544 a~~~~g~~~-~A~~l~~~m~~----~g--~~pd~~~y~~Li~~~~k~g~~~~A~~l~ 593 (856)
.+.....-+ .-.++++.+.+ .+ ..-|+.....+...|.+.|++.+|+.-|
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 554432111 12333333332 11 1235666677777777777777776655
No 253
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=55.74 E-value=2.8e+02 Score=31.82 Aligned_cols=253 Identities=13% Similarity=0.090 Sum_probs=137.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
.-+.-+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+-..| ......+..++..+.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~ 147 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWR 147 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHH
Confidence 345556777778887776665432 13355555556677778888888877777776555 444556777777777
Q ss_pred HcCCHHH--HHHHHHHHHHCC-----------CCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH---HH
Q 003028 442 KAGFLDV--AMDMYKKMQAAG-----------LSPDT-FTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVT---YN 504 (856)
Q Consensus 442 k~g~~~~--A~~l~~~m~~~g-----------~~pd~-~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~t---y~ 504 (856)
+.|.+.. ...-++.+...| +.++. .....++..+.+-..+ ..... . ..++... +.
T Consensus 148 ~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~---~--~~~~~~~~~~~~ 219 (618)
T 1qsa_A 148 ASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFAR---T--TGATDFTRQMAA 219 (618)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHH---H--SCCCHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHh---c--cCCChhhHHHHH
Confidence 6665432 333333333332 11111 1112222222211111 11111 0 1122221 11
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 003028 505 IMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEV----LGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLW 580 (856)
Q Consensus 505 ~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a----~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~ 580 (856)
.-+.-+.+ .+.+.|..+|....... ..+......+-.. +...+...++...+....... .+.......+...
T Consensus 220 ~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~A 295 (618)
T 1qsa_A 220 VAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMA 295 (618)
T ss_dssp HHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHH
T ss_pred HHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHH
Confidence 12233333 37789999998886543 2233333223222 233343556666666654432 3444455555566
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 581 GKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 581 ~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.+.|+++.|...|+.|..... ....-.--+..++...|+.++|..+|..+.+
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 678999999999998865321 1233233455677889999999999998874
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=55.60 E-value=37 Score=29.05 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=59.9
Q ss_pred hhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
.+.+++|..+-+|+..+.+ ...+--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++..
T Consensus 19 ~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 3678899999999986422 22222223445667899999988776553 688888888765 57888888888
Q ss_pred HHHHHHHcCCCCCHHHH
Q 003028 417 VFKQMQVVGCEPDRVTY 433 (856)
Q Consensus 417 lf~~m~~~g~~pd~~ty 433 (856)
.+.++...| .|....|
T Consensus 90 rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHTCS-SHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 887887666 4444444
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=55.46 E-value=81 Score=28.49 Aligned_cols=72 Identities=10% Similarity=-0.043 Sum_probs=46.6
Q ss_pred CCCHhhHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003028 567 VPDEPVYGLLVDLWGKAGNV---RKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 567 ~pd~~~y~~Li~~~~k~g~~---~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~ 640 (856)
.|+..+--.+..++.+..+. .++..+++++.+.+-.-....+-.|.-|+.+.|++++|.+..+.+++ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 45666666666666666544 35777777777654112344566677778888888888888887776 55654
No 256
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=54.89 E-value=23 Score=35.47 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=10.6
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 003028 365 TMVGILGRARQFGAINKLL 383 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf 383 (856)
+.+...++.|+++....++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH
Confidence 4455556667766544444
No 257
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=54.15 E-value=49 Score=28.33 Aligned_cols=78 Identities=10% Similarity=0.081 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003028 445 FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYR 524 (856)
Q Consensus 445 ~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 524 (856)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||.+.|-+|... +.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 46666666666665543 22222233445666777777776665543 4777777666543 5666666666665
Q ss_pred HHHHcC
Q 003028 525 DMQNAG 530 (856)
Q Consensus 525 ~M~~~g 530 (856)
+|...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665544
No 258
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=53.56 E-value=32 Score=33.46 Aligned_cols=15 Identities=7% Similarity=0.014 Sum_probs=5.9
Q ss_pred hcCCHHHHHHHHHHH
Q 003028 407 RANYLNEALDVFKQM 421 (856)
Q Consensus 407 ~~g~~~~A~~lf~~m 421 (856)
+.|+.+.+..+++.+
T Consensus 18 ~~g~~~~v~~Ll~~~ 32 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLF 32 (241)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 334444443343333
No 259
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=53.29 E-value=88 Score=33.37 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQM 386 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m 386 (856)
...+|.-|...++.++|...+++|
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL 80 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDL 80 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHh
Confidence 344555555555666655555554
No 260
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=52.78 E-value=30 Score=29.20 Aligned_cols=73 Identities=23% Similarity=0.358 Sum_probs=49.0
Q ss_pred eeeccccccchhhHHHHHHHHHHHHHHHHH-----cCCCCCceeeeeeccccCCcccchHHHHHHHHHHhhcCCCCcccC
Q 003028 754 WLINLHVMSDGTAVIALSRTLAWFRKQMLI-----SGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHMFSFPFFTEN 828 (856)
Q Consensus 754 w~~~~~~l~~g~a~~g~~~~l~~~~~~m~~-----~g~~Pd~it~i~~l~~~~~~~~~~~l~~a~~~ll~~~~~pf~~~~ 828 (856)
..+|+|.|....|... +..|..+... .| ...+.+|++.+.++. .+.+.++.++..+|...... +..
T Consensus 9 ~~lDLHGl~v~eA~~~----L~~~L~~~~~~~~~~~g--~~~v~IIhGkG~hS~-~g~~~Lk~~V~~~L~~~~~~--~~e 79 (96)
T 2d9i_A 9 NVLDLHGLHVDEALEH----LMRVLEKKTEEFKQNGG--KPYLSVITGRGNHSQ-GGVARIKPAVIKYLISHSFR--FSE 79 (96)
T ss_dssp CEEECTTSCHHHHHHH----HHHHHHHHHHHHHHTTC--CSEEEEECCCSGGGT-TCTTCHHHHHHHHHHHTTCC--EEC
T ss_pred CeEECCCCCHHHHHHH----HHHHHHHHHHHHHhhCC--CeEEEEEECcCCCCC-CCcchHHHHHHHHHhhCCCc--ccc
Confidence 4688898877666544 3344444331 44 346899999888875 34577999999999966543 345
Q ss_pred CCceEEE
Q 003028 829 GNSGCFV 835 (856)
Q Consensus 829 ~~~gc~v 835 (856)
.+.|+++
T Consensus 80 gg~Ga~~ 86 (96)
T 2d9i_A 80 IKPGCLK 86 (96)
T ss_dssp CSTTCEE
T ss_pred CCCcEEE
Confidence 5677776
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=51.93 E-value=66 Score=29.21 Aligned_cols=43 Identities=5% Similarity=0.020 Sum_probs=21.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 416 DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 416 ~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~ 458 (856)
+-++.+....+.|++....+.+.+|-+.+++..|..+|+-++.
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333444444455555555555555555555555555554443
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.74 E-value=67 Score=35.20 Aligned_cols=61 Identities=5% Similarity=-0.004 Sum_probs=38.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 467 TYSVIINCLGKAGHLQAAHQLFCEMVNQ--GCIPNLVTYNIMIALQAKARNYQSALKLYRDMQ 527 (856)
Q Consensus 467 ty~~Li~~y~k~g~~~~A~~lf~~m~~~--g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 527 (856)
+...+...|.+.|+++.|.++|.++.+. +..--...+-.+|..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4555666677777777777777766653 122234455666677777777777777776654
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.86 E-value=86 Score=34.28 Aligned_cols=95 Identities=19% Similarity=-0.011 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHH--HHHH
Q 003028 539 SIVMEVLGHCGYLDEAEAVFAEMRRK--NWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ---AGLRPNVPT--CNSL 611 (856)
Q Consensus 539 ~~ll~a~~~~g~~~~A~~l~~~m~~~--g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~---~g~~pd~~t--~n~L 611 (856)
..+...|.+.|+++.|.+++.++... +...-...+-.+|..+...+++..+...+++... .+-.|+... ...-
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 34444455555555555555555432 1112234455555556666666666666555542 121222111 0111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 003028 612 LSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 612 i~ay~~~g~~e~A~~l~~~M~~ 633 (856)
...+...+++.+|...|.+...
T Consensus 215 gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 215 GIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHHhc
Confidence 1223456788888887777654
No 264
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.61 E-value=1.4e+02 Score=31.72 Aligned_cols=79 Identities=10% Similarity=0.090 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003028 573 YGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQ--LSDAYHLLQGMLNLGLKPSLQTYTLLLSCC 650 (856)
Q Consensus 573 y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~--~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~ 650 (856)
.+.++.-|...++.++|.+.++++..-.+. .......+..++-+.++ .+....++..+...|+-+.......+...+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 567788888889999999988888521111 23344555556555433 355778888888877776665555555544
Q ss_pred Hh
Q 003028 651 TE 652 (856)
Q Consensus 651 ~~ 652 (856)
..
T Consensus 299 ~~ 300 (358)
T 3eiq_C 299 NE 300 (358)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=49.52 E-value=48 Score=28.37 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003028 445 FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYR 524 (856)
Q Consensus 445 ~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 524 (856)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-+|... +.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 45666666666665532 22222233445666777777766655443 4677777666543 5666666666665
Q ss_pred HHHHcC
Q 003028 525 DMQNAG 530 (856)
Q Consensus 525 ~M~~~g 530 (856)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 665554
No 266
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=47.60 E-value=2e+02 Score=33.29 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGR 407 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~ 407 (856)
.+|-.|.++|++++|.++.++.... +.--...|-.++..|+.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 4677788899999988888666432 11111345555666653
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=47.48 E-value=1e+02 Score=27.79 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=10.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 003028 471 IINCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 471 Li~~y~k~g~~~~A~~lf~~m~~ 493 (856)
|.-++.+.|++++|.+..+.+.+
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33344444444444444444443
No 268
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=47.39 E-value=50 Score=29.87 Aligned_cols=73 Identities=22% Similarity=0.339 Sum_probs=48.7
Q ss_pred eeeccccccchhhHHHHHHHHHHHHHHHHH-----cCCCCCceeeeeeccccCCcccchHHHHHHHHHHhhcCCCCcccC
Q 003028 754 WLINLHVMSDGTAVIALSRTLAWFRKQMLI-----SGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHMFSFPFFTEN 828 (856)
Q Consensus 754 w~~~~~~l~~g~a~~g~~~~l~~~~~~m~~-----~g~~Pd~it~i~~l~~~~~~~~~~~l~~a~~~ll~~~~~pf~~~~ 828 (856)
+.+|+|.|....|... +..|+.+... .| ...+.+|+|-|..+. .+.+.++.+|..+|... |+....
T Consensus 54 ~~LDLHGl~v~EA~~~----L~~fL~~a~~~~~~~~g--~~~v~IIhGkG~hS~-~g~~~Lk~~V~~~L~~~--~~~~~e 124 (135)
T 2vkc_A 54 NVLDLHGLHVDEALEH----LMRVLEKKTEEFKQNGG--KPYLSVITGRGNHSQ-GGVARIKPAVIKYLISH--SFRFSE 124 (135)
T ss_dssp TEEECTTCCHHHHHHH----HHHHHHHHHHHHHHTCC--CSEEEEECCSCSSSC-CSCCTHHHHHHHHHHTT--TCEEEE
T ss_pred ceEEeCCCcHHHHHHH----HHHHHHHHHHHHHhhCC--CeEEEEEECCCcCCC-CCCchHHHHHHHHHhcC--CCceee
Confidence 4688898877665544 3444444432 34 446899999888876 44578999999999854 444444
Q ss_pred CCceEEE
Q 003028 829 GNSGCFV 835 (856)
Q Consensus 829 ~~~gc~v 835 (856)
.+.|+++
T Consensus 125 ~g~G~~~ 131 (135)
T 2vkc_A 125 IKPGCLK 131 (135)
T ss_dssp CSTTEEE
T ss_pred CCCCeEE
Confidence 5667765
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=47.19 E-value=1.7e+02 Score=26.73 Aligned_cols=66 Identities=8% Similarity=-0.085 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003028 428 PDRVTYCTLIDIHAKAGF---LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 428 pd~~ty~~Ll~~~~k~g~---~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~ 493 (856)
|+..+--.+..++.+..+ ..+++.+++++...+..-.....--|.-++.+.|++++|.+..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444444442 234445555554432211222223333445555555555555555544
No 270
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=47.02 E-value=1.9e+02 Score=27.26 Aligned_cols=152 Identities=11% Similarity=0.043 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
+...-...+..+++.+..+....+. .+.. .++...-...+.++.+.+.. ++...+.++.. .+|...-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHH
Confidence 4444444455555555432222222 2222 24554444555555555442 22222222221 345555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQS 518 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 518 (856)
++.+.++.+ +...+.++.. .++..+-...+.++.+.|+.+ +...+..+.+ .++...-...+.++.+.+. .+
T Consensus 104 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~ 174 (211)
T 3ltm_A 104 ALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ER 174 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hh
Confidence 555555533 2222223322 245555555555555555432 2223333332 1344444444555555544 23
Q ss_pred HHHHHHHHH
Q 003028 519 ALKLYRDMQ 527 (856)
Q Consensus 519 A~~ll~~M~ 527 (856)
+...+..+.
T Consensus 175 ~~~~L~~~l 183 (211)
T 3ltm_A 175 VRAAMEKLA 183 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333343333
No 271
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=44.67 E-value=1.2e+02 Score=28.41 Aligned_cols=58 Identities=12% Similarity=-0.048 Sum_probs=32.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 506 MIALQAKARNYQSALKLYRDMQNA-GFEPDK-------VTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 506 Li~~~~~~g~~~~A~~ll~~M~~~-gi~pd~-------~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
-+..+...+.++.|+-+.+.+... +..|+. .++..+.+++...+++..|...|++..+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 355666677777776666654322 112221 2344555666666777777777766543
No 272
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=41.72 E-value=0.016 Score=64.06 Aligned_cols=221 Identities=12% Similarity=0.087 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
.|..|..+..+.+++.+|.+-| ++ .-|+..|..+|....+.|.+++-+.++...++.. .+...=+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsy--Ik----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSY--IK----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSS--CC----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHH--Hh----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHH
Confidence 5666666666666666665544 11 1255556666666666676666666665554432 22333345666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003028 442 KAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALK 521 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 521 (856)
+.+++.+-.+++. .||..-...+-+-|...|.++.|.-+|..+.+ |.-|...+.+.|++..|.+
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTT
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHH
Confidence 6666554333321 24444455555566666666666555554432 2222223333333333322
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003028 522 LYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGL 601 (856)
Q Consensus 522 ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~ 601 (856)
.-++ .-+..||-.+-.+|...+.+..|.-.--.+.-. ..-...|+..|-..|.+++...+++.-... -
T Consensus 192 aArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-E 259 (624)
T 3lvg_A 192 GARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-E 259 (624)
T ss_dssp TTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-T
T ss_pred HHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-C
Confidence 1111 123445666666666666555554443333221 111223444555566666655555554421 1
Q ss_pred CCCHHHHHHHHHHHHHc
Q 003028 602 RPNVPTCNSLLSAFLRV 618 (856)
Q Consensus 602 ~pd~~t~n~Li~ay~~~ 618 (856)
......|+.|.-.|++-
T Consensus 260 rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF 276 (624)
T ss_dssp TCCHHHHHHHHHHHHSS
T ss_pred chhHHHHHHHHHHHHhc
Confidence 23455555555555544
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=38.62 E-value=20 Score=35.87 Aligned_cols=19 Identities=5% Similarity=0.064 Sum_probs=9.9
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 003028 400 RLIHSYGRANYLNEALDVF 418 (856)
Q Consensus 400 ~Li~~~~~~g~~~~A~~lf 418 (856)
+.+...++.|+++....++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH
Confidence 3444556666665444443
No 274
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.42 E-value=27 Score=33.89 Aligned_cols=14 Identities=7% Similarity=0.097 Sum_probs=6.9
Q ss_pred HHhcCCHHHHHHHH
Q 003028 370 LGRARQFGAINKLL 383 (856)
Q Consensus 370 ~~k~g~~~~A~~lf 383 (856)
.++.|+++....++
T Consensus 16 A~~~g~~~~~~~Ll 29 (240)
T 3eu9_A 16 ATQYGIYERCRELV 29 (240)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCChHHHHHHH
Confidence 44556655444433
No 275
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=38.40 E-value=6.1e+02 Score=30.68 Aligned_cols=219 Identities=11% Similarity=-0.004 Sum_probs=113.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPDTFTY--SVIINCLGKAGHLQAAHQLFCEMVNQGC-------IPNLVTYNIMIALQ 510 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd~~ty--~~Li~~y~k~g~~~~A~~lf~~m~~~g~-------~pd~~ty~~Li~~~ 510 (856)
....|+.++++.+++.....+-..+..+- ..+.-+...+|.-+++..++.......- .+.+..-.+|--++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44556777777776665432111233322 2333445556665667777766554311 01122222333333
Q ss_pred HHcCC-HHHHHHHHHHHHHcCCCCCHHH--HH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH--HHhc
Q 003028 511 AKARN-YQSALKLYRDMQNAGFEPDKVT--YS--IVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDL--WGKA 583 (856)
Q Consensus 511 ~~~g~-~~~A~~ll~~M~~~gi~pd~~t--y~--~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~--~~k~ 583 (856)
+..|. -+++.+.+..+.... +... .. .|-..+...|+-+....++..+.+.. +..+...+..+ +...
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 33332 245666666665432 2111 12 22223445677777777777766532 33344444444 4467
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH-HHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCcc
Q 003028 584 GNVRKAWEWYEAMLQAGLRPNVP-TCN---SLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLS--CCTEARSPY 657 (856)
Q Consensus 584 g~~~~A~~l~~~m~~~g~~pd~~-t~n---~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~--a~~~~g~~~ 657 (856)
|+.+.+..+++.+... .+.. -|. ++..+|+-.|+.....+++..+... ++...-...+- ++...|+.+
T Consensus 538 g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 538 GRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp TCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCS
T ss_pred CChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHH
Confidence 8888888888888763 2322 222 3445677788877666688887763 23333333333 344466666
Q ss_pred hHHHHHHHHHHcC
Q 003028 658 DMGFCHELMAVSG 670 (856)
Q Consensus 658 ~a~~l~~~m~~~g 670 (856)
.+..+++.+...+
T Consensus 612 ~v~rlv~~L~~~~ 624 (963)
T 4ady_A 612 TVPRIVQLLSKSH 624 (963)
T ss_dssp SHHHHTTTGGGCS
T ss_pred HHHHHHHHHHhcC
Confidence 6666665555444
No 276
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.12 E-value=34 Score=33.24 Aligned_cols=87 Identities=10% Similarity=0.095 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHH
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDGCQPNVVT--YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVT--YCTLIDIH 440 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~t--y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t--y~~Ll~~~ 440 (856)
+.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++... -.+.+...
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHH
Confidence 345666788999888888887777665543221 1233444556666543 334444554443221 11233444
Q ss_pred HHcCCHHHHHHHHHH
Q 003028 441 AKAGFLDVAMDMYKK 455 (856)
Q Consensus 441 ~k~g~~~~A~~l~~~ 455 (856)
+..|+.+-+..+++.
T Consensus 87 ~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 87 CEHRSPTCLRALLDS 101 (241)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHc
Confidence 456666554444443
No 277
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=36.43 E-value=4e+02 Score=27.95 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=14.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHH
Q 003028 569 DEPVYGLLVDLWGKAGNVRKAWEWY 593 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~~~~A~~l~ 593 (856)
|+..-..+...|.+.+++.+|+.-|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4455555556666666666665554
No 278
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=36.08 E-value=1.6e+02 Score=27.68 Aligned_cols=127 Identities=11% Similarity=0.064 Sum_probs=65.7
Q ss_pred CCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 459 AGLSPDTFTY--SVIINCLGKAGHLQAAHQLFCEMVNQ-GCIPNL-------VTYNIMIALQAKARNYQSALKLYRDMQN 528 (856)
Q Consensus 459 ~g~~pd~~ty--~~Li~~y~k~g~~~~A~~lf~~m~~~-g~~pd~-------~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 528 (856)
.|+.|....| -.-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...+++.+|...|++..+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3555544443 34477788899999999888876532 123332 2456677899999999999999998643
Q ss_pred cC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 529 AG--FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ 598 (856)
Q Consensus 529 ~g--i~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~ 598 (856)
.. +.-+..+++.+ . ....... ......+..+---+-.+|.+.+++++|+.+++.+..
T Consensus 92 ~~k~l~k~~s~~~~~-~---~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 92 QKKALSKTSKVRPST-G---NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHhcCCCccccc-c---ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 21 11111111111 0 0000000 001122334444466777788888888887776543
No 279
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=36.00 E-value=2.7e+02 Score=28.80 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMV 387 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~ 387 (856)
...+|.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4456677777777777777777654
No 280
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.88 E-value=27 Score=33.80 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=20.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHHHHHHH
Q 003028 404 SYGRANYLNEALDVFKQMQVVGCEPDRV--TYCTLIDIHAKAGFLDVAMDM 452 (856)
Q Consensus 404 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~--ty~~Ll~~~~k~g~~~~A~~l 452 (856)
..++.|+++....+++ .|..++.. .-.+.+...+..|+.+-+..+
T Consensus 15 ~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 61 (240)
T 3eu9_A 15 KATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61 (240)
T ss_dssp HHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHH
Confidence 3455666555444443 34333221 112344455566665544333
No 281
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=34.33 E-value=4.6e+02 Score=28.09 Aligned_cols=93 Identities=18% Similarity=0.143 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHhhHHHH-
Q 003028 505 IMIALQAKARNYQSALKLYRDMQNAGFEPD-----KVTYSIVMEVLGHCGYLDEAEAVFAEMRRK--NWVPDEPVYGLL- 576 (856)
Q Consensus 505 ~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-----~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~--g~~pd~~~y~~L- 576 (856)
-|+..|...|++.+|.+++.++.+.=-..| ...|..-++.|...+++.++...+...... .+.+++.+...+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 467788888888888888887765311111 224555566777788888888888776543 222333332221
Q ss_pred ---HHHHH-hcCCHHHHHHHHHHHH
Q 003028 577 ---VDLWG-KAGNVRKAWEWYEAML 597 (856)
Q Consensus 577 ---i~~~~-k~g~~~~A~~l~~~m~ 597 (856)
..++. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 12244 6788888777766543
No 282
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=32.24 E-value=3.2e+02 Score=25.57 Aligned_cols=109 Identities=14% Similarity=0.009 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 533 PDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLL 612 (856)
Q Consensus 533 pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li 612 (856)
++...-...+.++...++.+.. ..+..+.. .++..+-...+.++.+.++.+ +...+..+.+ .++...-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 3444444444455554443222 22222221 234444445555555555432 2333333332 24555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003028 613 SAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEA 653 (856)
Q Consensus 613 ~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~ 653 (856)
.++.+.+. .++...+.++.+ .++...-...+.++...
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHC-
T ss_pred HHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHhc
Confidence 55555554 344555555544 23444444444444433
No 283
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=30.99 E-value=3.1e+02 Score=25.00 Aligned_cols=72 Identities=10% Similarity=-0.043 Sum_probs=47.4
Q ss_pred CCCHhhHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003028 567 VPDEPVYGLLVDLWGKAGNV---RKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 567 ~pd~~~y~~Li~~~~k~g~~---~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~ 640 (856)
.|+..+--.+..++.+..+. .++..+++++...+-.-.....-.|.-|+.+.|++++|.++.+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 45666666666677766654 45777777777643222334445566778888888888888888887 56654
No 284
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=29.65 E-value=1.2e+02 Score=30.91 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=18.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEM 491 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m 491 (856)
.|.++++++....-++.. +-|...-..|+..+|-.|+++.|.+-++..
T Consensus 10 ~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344444444333333331 223333334444444444444444444333
No 285
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=29.20 E-value=3.3e+02 Score=26.29 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003028 481 LQAAHQLFCEMVNQGCIPN-LVTYNIMIALQAKARNYQSALKLYRDMQNAGFEP 533 (856)
Q Consensus 481 ~~~A~~lf~~m~~~g~~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~p 533 (856)
..++..+|..|...|+-.. ..-|......+...|++.+|.++|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444444444444432221 2233334444444444444444444444443333
No 286
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.63 E-value=2.1e+02 Score=29.66 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003028 573 YGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQ--LSDAYHLLQGMLNLGLKPSLQTYTLL 646 (856)
Q Consensus 573 y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~--~e~A~~l~~~M~~~g~~Pd~~ty~~L 646 (856)
...++.-|...|+.++|.+.++++..-.+ -.......+..++-+.++ .+....++..+.+.|+-+.......+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f-~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGG-HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 34666677777788888777777742111 112334444455544333 34456777777766655554443333
No 287
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.57 E-value=18 Score=36.11 Aligned_cols=56 Identities=7% Similarity=-0.094 Sum_probs=31.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHH--hcCCHHHHHHHHHHH
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNVVT-------YNRLIHSYG--RANYLNEALDVFKQM 421 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~t-------y~~Li~~~~--~~g~~~~A~~lf~~m 421 (856)
.+...++.|+.+....+++.+.+.|..++... ++.|..+.. +.|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34455677888877777777776665554332 233333321 456665555555543
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.43 E-value=3.8e+02 Score=26.43 Aligned_cols=28 Identities=18% Similarity=0.076 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 499 NLVTYNIMIALQAKARNYQSALKLYRDM 526 (856)
Q Consensus 499 d~~ty~~Li~~~~~~g~~~~A~~ll~~M 526 (856)
+...-...+..+.+.|+.++|.++|=+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3444444555666666666666665443
No 289
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=27.94 E-value=4.9e+02 Score=26.37 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=37.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 404 SYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 404 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~ 459 (856)
...+.|.+++|++....-.+.. +-|...-..|+..+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456677777777776665553 556666777777777777777777777666554
No 290
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.97 E-value=2.2e+02 Score=26.66 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=32.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCC
Q 003028 470 VIINCLGKAGHLQAAHQLFCEMVNQGCIPNLV---TYNIMIALQAK-ARNYQSALKLYRDMQNAGFEPD 534 (856)
Q Consensus 470 ~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~---ty~~Li~~~~~-~g~~~~A~~ll~~M~~~gi~pd 534 (856)
+.+...+..|+.+.-.++.+.+.+.|..++.. -++.|..++.. ..+.....++.+.+.+.|..++
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 34445555566655556666666666555432 22233322222 2233344556666666665554
No 291
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=26.20 E-value=9.1e+02 Score=28.93 Aligned_cols=90 Identities=14% Similarity=0.008 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003028 399 NRLIHSYGRANY---LNEALDVFKQMQVVG----CEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVI 471 (856)
Q Consensus 399 ~~Li~~~~~~g~---~~~A~~lf~~m~~~g----~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~L 471 (856)
..++...|..|. .++|.+.|++....+ +.||.. ..+...-.+.|..++-..+++.+... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 445666666665 346667776655421 344432 23333344556666656666666554 233444566
Q ss_pred HHHHHccCCHHHHHHHHHHHHH
Q 003028 472 INCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 472 i~~y~k~g~~~~A~~lf~~m~~ 493 (856)
+.+++-..+.+...++++....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTC
T ss_pred HHHhCCCCCHHHHHHHHHHHhC
Confidence 6777766777666666666554
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=25.60 E-value=4.6e+02 Score=25.28 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=46.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003028 583 AGNVRKAWEWYEAMLQAGLRPN-VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 583 ~g~~~~A~~l~~~m~~~g~~pd-~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~ 640 (856)
++....+..+|..|..+|+-.. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4557789999999988776544 556778888888899999999999998888888843
No 293
>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1
Probab=25.19 E-value=35 Score=21.27 Aligned_cols=19 Identities=37% Similarity=0.941 Sum_probs=14.6
Q ss_pred CCCCCCCCccCCCccchhh
Q 003028 24 CSASDGSSCTCSEDETCVS 42 (856)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~ 42 (856)
|+-++-.+|+|..+=+|+.
T Consensus 3 CgCs~tgtC~Cg~~CsC~g 21 (26)
T 1t2y_A 3 CGCSGASSCNCGSGCSCSN 21 (26)
T ss_dssp CSCSSTTTCCCSSSCCSST
T ss_pred cccCCCccccCCCCccccC
Confidence 5555578999999988864
No 294
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.92 E-value=39 Score=33.49 Aligned_cols=27 Identities=0% Similarity=-0.194 Sum_probs=14.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003028 403 HSYGRANYLNEALDVFKQMQVVGCEPD 429 (856)
Q Consensus 403 ~~~~~~g~~~~A~~lf~~m~~~g~~pd 429 (856)
...++.|+.+....+++.+.+.|...+
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 334455666665556655555444443
No 295
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.60 E-value=77 Score=29.62 Aligned_cols=12 Identities=0% Similarity=-0.111 Sum_probs=5.0
Q ss_pred HHHHHHHHcCCC
Q 003028 556 AVFAEMRRKNWV 567 (856)
Q Consensus 556 ~l~~~m~~~g~~ 567 (856)
++.+.+.+.|..
T Consensus 159 ~~v~~Ll~~ga~ 170 (201)
T 3hra_A 159 DIVKLLMENGAD 170 (201)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHCCCC
Confidence 344444444433
No 296
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=23.85 E-value=4.3e+02 Score=24.34 Aligned_cols=107 Identities=15% Similarity=0.035 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 533 PDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLL 612 (856)
Q Consensus 533 pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li 612 (856)
++...-...+.++...++.+....+. .+.. .++..+-...+.++.+.++.+ +...+..+.. .++...-...+
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~ 159 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLI-KALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 159 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHH-HHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 34444444555555555433222222 2221 234444445555555555432 2223333322 24555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 613 SAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCT 651 (856)
Q Consensus 613 ~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~ 651 (856)
.++.+.|. +++...+..+.+ .++...-...+.++.
T Consensus 160 ~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 160 DALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLE 194 (201)
T ss_dssp HHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 55555554 334444444443 234444444444443
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.55 E-value=3.8e+02 Score=23.61 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 003028 539 SIVMEVLGHCGYLDEAEAVFAEM 561 (856)
Q Consensus 539 ~~ll~a~~~~g~~~~A~~l~~~m 561 (856)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34444444455555555555444
No 298
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.26 E-value=7.8e+02 Score=27.09 Aligned_cols=116 Identities=13% Similarity=0.104 Sum_probs=70.1
Q ss_pred HHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003028 332 QVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYL 411 (856)
Q Consensus 332 ~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~ 411 (856)
-++..+.+.+.|+++-. +.|+.--...|..-.+.+...|++++|.++--.-++ |+-.+..|.+.+-..=...|+.
T Consensus 337 yi~~~l~n~~lA~~lA~----R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~ 411 (494)
T 1bpo_A 337 YITNVLQNPDLALRMAV----RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQT 411 (494)
T ss_dssp HHHHTTCCHHHHHHHHH----HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSC
T ss_pred hhhhccCCHHHHHHHHH----hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCC
Confidence 34445566666665543 456655666787788888899999999888766654 5666777776665544445555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003028 412 NEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMY 453 (856)
Q Consensus 412 ~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~ 453 (856)
.-.+.+|.-+.+.| ..+..----++..-...|+.+...+.+
T Consensus 412 splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 412 SPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp CHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHH
Confidence 55666666666655 344333333444444445544444433
No 299
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.12 E-value=35 Score=32.11 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=26.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCC
Q 003028 472 INCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARN-YQSALKLYRDMQNAGFEPD 534 (856)
Q Consensus 472 i~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~-~~~A~~ll~~M~~~gi~pd 534 (856)
+...+..|+.+-+..+++.-...-...|..-++.|..+. ..++ ...-.++++.+.+.|..++
T Consensus 110 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV-GLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH-HSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH-HhccchhhHHHHHHHHHHCCCCCC
Confidence 344555666655544443320000011222333343333 3333 3333556666666666554
No 300
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.99 E-value=2.6e+02 Score=28.50 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 003028 364 TTMVGILGRARQFGAINKLL 383 (856)
Q Consensus 364 ~~Li~~~~k~g~~~~A~~lf 383 (856)
++.+...++.|+++-+..++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL 45 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLL 45 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHH
Confidence 33444445666665544443
No 301
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=22.96 E-value=8.8e+02 Score=27.62 Aligned_cols=283 Identities=8% Similarity=0.022 Sum_probs=156.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003028 375 QFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYK 454 (856)
Q Consensus 375 ~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~ 454 (856)
...+...++++... .+.....-+.-+..+.+.+++...+.++.. .+.+...-.....+....|+..+|.....
T Consensus 54 ~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~ 126 (618)
T 1qsa_A 54 PAVTVTNFVRANPT--LPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAK 126 (618)
T ss_dssp CHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 45555555443322 111223335566777888888888876543 14566666677888888999888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 003028 455 KMQAAGLSPDTFTYSVIINCLGKAGHLQA--AHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNA--- 529 (856)
Q Consensus 455 ~m~~~g~~pd~~ty~~Li~~y~k~g~~~~--A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~--- 529 (856)
.+-..|- .....+..|+..+.+.|.+.. ...=++.+...| +...-..|+... . .......+.+..+...
T Consensus 127 ~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~ 200 (618)
T 1qsa_A 127 ELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANNPNT 200 (618)
T ss_dssp HHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGG
T ss_pred HHHhCCC-CCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhChHh
Confidence 8877653 356778889999998776533 333344444433 111111122111 0 0010000111111110
Q ss_pred ------CCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH----HHHHHhcCCHHHHHHHHHHH
Q 003028 530 ------GFEPDKVT---YSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLL----VDLWGKAGNVRKAWEWYEAM 596 (856)
Q Consensus 530 ------gi~pd~~t---y~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~L----i~~~~k~g~~~~A~~l~~~m 596 (856)
...++... +...+.-+.+ .+.+.|...+....+.. ..+......+ ...+...+...++...+...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~ 278 (618)
T 1qsa_A 201 VLTFARTTGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA 278 (618)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred HHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Confidence 01233221 1222333333 47899999998887543 2233333322 22333445355666666665
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHH
Q 003028 597 LQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMF 676 (856)
Q Consensus 597 ~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~ 676 (856)
.... .+.....-.+..-.+.|+++.|...|..|..... ....-..-+-.+....|+.+++..+++.+... .....+
T Consensus 279 ~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~-~~fYg~ 354 (618)
T 1qsa_A 279 IMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPM 354 (618)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHH
T ss_pred cccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC-CChHHH
Confidence 5432 3443344444445578999999999999875322 23443444555778889999999999888753 344443
No 302
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.48 E-value=4.7e+02 Score=27.71 Aligned_cols=25 Identities=12% Similarity=-0.059 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMV 387 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~ 387 (856)
...+|.-|...|++++|...++++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4556666666666666666666654
No 303
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.73 E-value=1.9e+02 Score=27.01 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 003028 481 LQAAHQLFCEMVNQGCIPN 499 (856)
Q Consensus 481 ~~~A~~lf~~m~~~g~~pd 499 (856)
.....++.+.+.+.|..++
T Consensus 90 ~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 90 ITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHHHHTTCCSS
T ss_pred hhhHHHHHHHHHHCCCCCC
Confidence 3334455555556555443
No 304
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.58 E-value=4.2e+02 Score=23.34 Aligned_cols=62 Identities=16% Similarity=0.301 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCC
Q 003028 399 NRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG--FLDVAMDMYKKMQAAGL 461 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g--~~~~A~~l~~~m~~~g~ 461 (856)
+.+|.-|...|+.++|...++++.... -....++..+..++-+.+ ..+.+.+++..+...|+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 445556666666666666666653111 011222333333333332 13445555555555544
No 305
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=20.65 E-value=5e+02 Score=23.88 Aligned_cols=80 Identities=11% Similarity=0.004 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 428 PDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMI 507 (856)
Q Consensus 428 pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li 507 (856)
++...-...+.++.+.++.+. ...+..+.. .++..+-...+.++.+.++.+ +...+..+.+. ++...-...+
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~ 159 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAA 159 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHH
Confidence 455555555555555554332 222222222 234444455555555555432 22222222221 3444444444
Q ss_pred HHHHHcCC
Q 003028 508 ALQAKARN 515 (856)
Q Consensus 508 ~~~~~~g~ 515 (856)
.++.+.|.
T Consensus 160 ~aL~~~~~ 167 (201)
T 3ltj_A 160 DALGEIGG 167 (201)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhCc
Confidence 44444444
Done!