BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003030
         (855 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain
          Length = 106

 Score =  114 bits (286), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/86 (59%), Positives = 70/86 (81%)

Query: 760 ETLDADVKRWSSGKEGNLRALLSTLQYILGPDSGWHPIPLTEVITSAAVKKAYRKATLCV 819
           + +DA +++WSSGK GN+R+LLSTLQYIL   SGW P+PL ++I   AV+K+Y++A L +
Sbjct: 9   KNIDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLIL 68

Query: 820 HPDKLQQRGASIQQKYICEKVFDLLK 845
           HPDKLQQ+GAS  QKY+ EKVF+LL+
Sbjct: 69  HPDKLQQKGASANQKYMAEKVFELLQ 94


>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
          Length = 114

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 769 WSSGKEGNLRALLSTLQYILGP-DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDK 823
           W  GKE N+RALLST+  +L   ++ W P+ + +++T   VKK YRKA L VHPDK
Sbjct: 26  WIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDK 81


>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
           Binding Domain Of Bovine Auxilin
          Length = 182

 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 758 LAETLDAD---VKRWSSGKEGNLRALLSTLQYILGP-DSGWHPIPLTEVITSAAVKKAYR 813
           +A+ +D +   +  W  GKE N+RALLST+  +L   ++ W P+ + +++T   VKK YR
Sbjct: 80  MAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYR 139

Query: 814 KATLCVHPDK 823
           KA L VHPDK
Sbjct: 140 KAVLVVHPDK 149


>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
 pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
          Length = 101

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 769 WSSGKEGNLRALLSTLQYILGP-DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDK 823
           W  GKE N+RALLST   +L   ++ W P+   +++T   VKK YRKA L VHPDK
Sbjct: 13  WIEGKERNIRALLSTXHTVLWAGETKWKPVGXADLVTPEQVKKVYRKAVLVVHPDK 68


>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
           Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
           (810-910aa)d876c In The AdpPi Form #1
 pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
           Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
           (810-910aa)d876c In The AdpPi Form #2
 pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
           Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
           (810-910aa)d876c In The Amppnp Hydrolyzed Form
 pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
           Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
           (810-910aa)d876c In The Amppnp Intact Form
          Length = 92

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 766 VKRWSSGKEGNLRALLSTLQYILGP-DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDK 823
           +  W  GKE N+RALLST+  +L   ++ W P+ + +++T   VKK YRKA L VHP K
Sbjct: 7   ILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCK 65


>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
           Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
           (810-910aa)d876c In The AdpPi State
          Length = 94

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 766 VKRWSSGKEGNLRALLSTLQYILGP-DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDK 823
           +  W  GKE N+RALLST+  +L   ++ W P+ + +++T   VKK YRKA L VHP K
Sbjct: 8   ILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCK 66


>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
          Length = 77

 Score = 30.8 bits (68), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 794 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLL 844
           +  + L    +   +K+AYR+  L  HPDK ++ GA  + K I E  +D+L
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAE-AYDVL 55


>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
           Hcg3, A Hypothetical Protein Tmp_locus_21
          Length = 82

 Score = 30.4 bits (67), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 804 TSAAVKKAYRKATLCVHPDK 823
           +S A+KKAYRK  L  HPDK
Sbjct: 22  SSEAIKKAYRKLALKWHPDK 41


>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
           Menber 5
          Length = 109

 Score = 29.6 bits (65), Expect = 8.4,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 791 DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDK 823
           +S +H + L +  TS  +KK+YRK  L  HPDK
Sbjct: 17  ESLYHVLGLDKNATSDDIKKSYRKLALKYHPDK 49


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.125    0.339 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,613,163
Number of Sequences: 62578
Number of extensions: 718270
Number of successful extensions: 2155
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2120
Number of HSP's gapped (non-prelim): 55
length of query: 855
length of database: 14,973,337
effective HSP length: 107
effective length of query: 748
effective length of database: 8,277,491
effective search space: 6191563268
effective search space used: 6191563268
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)