Query 003030
Match_columns 855
No_of_seqs 238 out of 364
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 15:38:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0431 Auxilin-like protein a 100.0 4E-39 8.7E-44 356.2 10.2 145 709-853 302-450 (453)
2 smart00271 DnaJ DnaJ molecular 98.5 1.2E-07 2.5E-12 77.2 5.5 54 794-853 4-57 (60)
3 cd06257 DnaJ DnaJ domain or J- 98.5 1.5E-07 3.2E-12 75.2 5.4 53 794-853 3-55 (55)
4 KOG0713 Molecular chaperone (D 98.5 9.5E-08 2.1E-12 103.8 5.0 59 788-853 13-71 (336)
5 COG0484 DnaJ DnaJ-class molecu 98.5 1.3E-07 2.7E-12 104.4 5.3 55 792-853 5-59 (371)
6 PRK09430 djlA Dna-J like membr 98.4 2.4E-07 5.2E-12 98.0 6.1 63 792-854 201-263 (267)
7 PF00226 DnaJ: DnaJ domain; I 98.4 4.3E-07 9.3E-12 75.2 4.9 54 794-853 3-56 (64)
8 PRK14288 chaperone protein Dna 98.3 5E-07 1.1E-11 99.2 5.2 55 792-853 4-58 (369)
9 PRK09510 tolA cell envelope in 98.3 7.8E-05 1.7E-09 83.2 22.0 13 652-664 255-267 (387)
10 PRK14296 chaperone protein Dna 98.2 1.4E-06 3.1E-11 95.8 5.0 53 793-853 6-58 (372)
11 PRK14279 chaperone protein Dna 98.2 1.7E-06 3.7E-11 95.8 5.2 55 792-853 10-64 (392)
12 PRK14285 chaperone protein Dna 98.2 1.9E-06 4E-11 94.6 5.1 54 793-853 5-58 (365)
13 KOG0691 Molecular chaperone (D 98.1 2.8E-06 6E-11 91.7 5.6 53 794-853 8-60 (296)
14 KOG0718 Molecular chaperone (D 98.1 2.5E-06 5.5E-11 96.0 4.7 61 789-853 7-67 (546)
15 PRK14299 chaperone protein Dna 98.1 2.7E-06 5.8E-11 90.7 4.7 54 792-853 5-58 (291)
16 PRK14295 chaperone protein Dna 98.1 3.1E-06 6.7E-11 93.7 5.2 55 792-853 10-64 (389)
17 PRK14286 chaperone protein Dna 98.1 2.9E-06 6.3E-11 93.3 5.0 54 793-853 6-59 (372)
18 PRK14277 chaperone protein Dna 98.1 3E-06 6.4E-11 93.6 5.0 55 792-853 6-60 (386)
19 PRK10767 chaperone protein Dna 98.1 3.1E-06 6.8E-11 92.8 5.2 55 792-853 5-59 (371)
20 PRK14283 chaperone protein Dna 98.1 3.5E-06 7.6E-11 92.8 5.1 54 792-853 6-59 (378)
21 PRK14294 chaperone protein Dna 98.1 4E-06 8.7E-11 92.0 5.1 55 792-853 5-59 (366)
22 PRK10266 curved DNA-binding pr 98.0 4.1E-06 8.9E-11 89.8 5.0 54 792-853 5-58 (306)
23 PRK14281 chaperone protein Dna 98.0 4.9E-06 1.1E-10 92.3 5.4 54 793-853 5-58 (397)
24 PRK14280 chaperone protein Dna 98.0 4.8E-06 1.1E-10 91.7 5.1 54 792-853 5-58 (376)
25 PRK14276 chaperone protein Dna 98.0 4.9E-06 1.1E-10 91.8 5.1 54 792-853 5-58 (380)
26 PRK14297 chaperone protein Dna 98.0 4.8E-06 1E-10 91.8 5.0 55 792-853 5-59 (380)
27 PRK14301 chaperone protein Dna 98.0 5.5E-06 1.2E-10 91.3 5.2 54 793-853 6-59 (373)
28 PRK14287 chaperone protein Dna 98.0 5.7E-06 1.2E-10 91.1 4.8 53 793-853 6-58 (371)
29 PTZ00037 DnaJ_C chaperone prot 98.0 5.2E-06 1.1E-10 93.1 4.6 50 793-853 30-79 (421)
30 PRK14282 chaperone protein Dna 98.0 6.5E-06 1.4E-10 90.4 5.2 56 792-853 5-60 (369)
31 KOG0717 Molecular chaperone (D 98.0 4.7E-06 1E-10 93.8 3.8 56 792-853 9-64 (508)
32 PRK14298 chaperone protein Dna 97.9 8.1E-06 1.8E-10 90.1 4.7 54 792-853 6-59 (377)
33 KOG0716 Molecular chaperone (D 97.9 1.2E-05 2.5E-10 85.9 5.3 52 795-853 35-86 (279)
34 PRK14290 chaperone protein Dna 97.9 1.2E-05 2.6E-10 88.2 5.7 56 792-853 4-59 (365)
35 PHA03102 Small T antigen; Revi 97.9 1.6E-05 3.6E-10 78.8 5.1 45 799-854 13-59 (153)
36 COG2214 CbpA DnaJ-class molecu 97.8 2.2E-05 4.8E-10 75.0 5.5 54 794-853 9-62 (237)
37 PRK05014 hscB co-chaperone Hsc 97.8 3.9E-05 8.5E-10 76.7 6.6 56 797-854 7-64 (171)
38 PRK14289 chaperone protein Dna 97.8 2.3E-05 5.1E-10 86.5 5.1 55 792-853 6-60 (386)
39 PTZ00100 DnaJ chaperone protei 97.7 3.4E-05 7.3E-10 73.7 4.3 50 793-853 67-116 (116)
40 PTZ00341 Ring-infected erythro 97.6 4.8E-05 1.1E-09 92.0 5.4 54 792-853 574-627 (1136)
41 KOG1150 Predicted molecular ch 97.6 4.7E-05 1E-09 78.8 4.5 52 795-852 57-108 (250)
42 PRK00294 hscB co-chaperone Hsc 97.6 0.00012 2.6E-09 73.8 6.5 51 801-853 16-66 (173)
43 KOG0719 Molecular chaperone (D 97.6 8.3E-05 1.8E-09 78.4 5.6 56 792-852 15-70 (264)
44 KOG0720 Molecular chaperone (D 97.6 6E-05 1.3E-09 85.1 4.6 70 775-852 219-288 (490)
45 PRK03578 hscB co-chaperone Hsc 97.6 0.00013 2.9E-09 73.5 6.6 56 796-853 11-68 (176)
46 PRK01356 hscB co-chaperone Hsc 97.5 0.00016 3.5E-09 72.3 6.2 54 796-853 7-62 (166)
47 TIGR00714 hscB Fe-S protein as 97.5 0.00016 3.5E-09 71.6 5.8 49 803-853 3-51 (157)
48 KOG0715 Molecular chaperone (D 97.4 0.00017 3.6E-09 77.7 5.5 59 787-853 39-97 (288)
49 KOG0721 Molecular chaperone (D 97.4 0.00018 3.9E-09 75.2 5.3 52 794-852 102-153 (230)
50 KOG0550 Molecular chaperone (D 97.4 0.00024 5.3E-09 79.9 6.4 97 752-855 327-431 (486)
51 COG3064 TolA Membrane protein 97.1 0.046 9.9E-07 60.3 19.0 27 782-808 328-357 (387)
52 PHA02624 large T antigen; Prov 97.0 0.00056 1.2E-08 80.3 4.3 47 797-854 17-65 (647)
53 COG5407 SEC63 Preprotein trans 96.7 0.0016 3.4E-08 74.0 5.0 71 777-852 87-157 (610)
54 KOG0712 Molecular chaperone (D 96.7 0.0014 3.1E-08 72.3 4.3 36 791-826 4-39 (337)
55 PRK09510 tolA cell envelope in 96.5 0.31 6.6E-06 55.3 20.8 22 519-540 90-111 (387)
56 KOG0714 Molecular chaperone (D 96.4 0.0022 4.8E-08 64.8 3.2 51 797-853 9-59 (306)
57 PRK14284 chaperone protein Dna 96.4 0.0027 5.9E-08 70.7 3.8 34 793-826 3-36 (391)
58 COG3064 TolA Membrane protein 96.3 0.55 1.2E-05 52.2 20.7 12 653-664 258-269 (387)
59 PRK14300 chaperone protein Dna 96.3 0.0043 9.3E-08 68.8 4.9 34 792-825 4-37 (372)
60 TIGR02794 tolA_full TolA prote 96.2 0.56 1.2E-05 52.4 20.1 18 805-822 308-325 (346)
61 PRK14291 chaperone protein Dna 96.1 0.0057 1.2E-07 68.0 4.8 34 793-826 5-38 (382)
62 PRK14278 chaperone protein Dna 96.1 0.0058 1.3E-07 68.0 4.4 34 792-825 4-37 (378)
63 PRK01773 hscB co-chaperone Hsc 96.0 0.014 3.1E-07 59.0 6.5 50 802-853 15-64 (173)
64 TIGR02349 DnaJ_bact chaperone 95.9 0.0074 1.6E-07 66.2 4.4 32 794-825 3-34 (354)
65 PTZ00121 MAEBL; Provisional 95.9 0.44 9.5E-06 60.9 19.5 13 726-738 1287-1299(2084)
66 PRK14293 chaperone protein Dna 95.9 0.01 2.2E-07 65.9 5.2 35 792-826 4-38 (374)
67 PRK14292 chaperone protein Dna 95.7 0.0094 2E-07 65.9 4.1 33 793-825 4-36 (371)
68 KOG1789 Endocytosis protein RM 95.5 0.019 4.1E-07 70.7 5.6 38 805-852 1299-1336(2235)
69 KOG0722 Molecular chaperone (D 95.4 0.008 1.7E-07 64.7 2.2 53 793-853 35-87 (329)
70 COG5269 ZUO1 Ribosome-associat 95.2 0.035 7.6E-07 60.3 6.0 77 756-853 27-103 (379)
71 KOG0723 Molecular chaperone (D 93.8 0.092 2E-06 50.3 4.7 45 797-852 62-106 (112)
72 KOG0624 dsRNA-activated protei 92.9 0.12 2.5E-06 58.3 4.6 59 791-853 394-452 (504)
73 TIGR02794 tolA_full TolA prote 92.8 8 0.00017 43.5 18.7 21 614-635 193-213 (346)
74 TIGR03835 termin_org_DnaJ term 92.2 0.15 3.3E-06 61.9 4.6 33 794-826 5-37 (871)
75 COG1076 DjlA DnaJ-domain-conta 91.1 0.21 4.6E-06 50.2 3.7 58 794-851 116-173 (174)
76 KOG1029 Endocytic adaptor prot 68.3 79 0.0017 39.7 13.5 13 511-523 312-324 (1118)
77 KOG4661 Hsp27-ERE-TATA-binding 59.8 2.2E+02 0.0047 35.0 14.7 11 711-721 794-804 (940)
78 PF14687 DUF4460: Domain of un 59.0 21 0.00045 34.5 5.5 49 802-853 5-53 (112)
79 KOG1144 Translation initiation 57.8 79 0.0017 39.8 11.0 9 773-781 469-477 (1064)
80 KOG1029 Endocytic adaptor prot 54.9 3.2E+02 0.0069 34.8 15.3 6 805-810 650-655 (1118)
81 KOG1144 Translation initiation 54.3 98 0.0021 39.0 11.0 7 629-635 294-300 (1064)
82 KOG0568 Molecular chaperone (D 52.5 24 0.00052 38.5 5.2 66 775-850 30-98 (342)
83 PF08628 Nexin_C: Sorting nexi 50.8 16 0.00035 34.1 3.3 72 773-846 36-110 (113)
84 PF11600 CAF-1_p150: Chromatin 50.3 3.3E+02 0.0071 28.7 18.5 6 656-661 182-187 (216)
85 KOG4364 Chromatin assembly fac 47.3 4.6E+02 0.01 32.9 14.9 31 752-782 646-676 (811)
86 KOG0163 Myosin class VI heavy 45.6 4.4E+02 0.0095 33.7 14.4 15 812-826 1180-1194(1259)
87 KOG0163 Myosin class VI heavy 44.4 3.6E+02 0.0078 34.4 13.5 14 114-127 479-492 (1259)
88 PRK06569 F0F1 ATP synthase sub 43.6 1.7E+02 0.0037 30.0 9.4 26 624-649 78-103 (155)
89 PF09738 DUF2051: Double stran 40.5 2.6E+02 0.0057 31.5 11.0 11 613-623 1-11 (302)
90 PRK07735 NADH dehydrogenase su 37.6 7.8E+02 0.017 29.4 17.3 7 789-795 381-387 (430)
91 PRK00247 putative inner membra 36.0 4.7E+02 0.01 30.9 12.5 7 637-643 374-380 (429)
92 PLN03086 PRLI-interacting fact 35.3 1.5E+02 0.0033 36.0 8.7 11 559-569 8-18 (567)
93 PRK12472 hypothetical protein; 32.6 4.4E+02 0.0096 31.8 11.6 94 523-620 228-321 (508)
94 COG1076 DjlA DnaJ-domain-conta 31.7 66 0.0014 32.6 4.4 47 805-853 17-63 (174)
95 PF05262 Borrelia_P83: Borreli 29.6 1.1E+03 0.023 28.6 16.0 11 760-770 426-436 (489)
96 PF00769 ERM: Ezrin/radixin/mo 24.8 9.1E+02 0.02 26.2 16.5 21 758-778 209-229 (246)
97 PLN03086 PRLI-interacting fact 23.9 4.1E+02 0.0088 32.5 9.6 6 776-781 201-206 (567)
98 PF03656 Pam16: Pam16; InterP 23.6 1E+02 0.0023 30.6 4.0 38 798-842 65-102 (127)
99 KOG2072 Translation initiation 23.3 6.3E+02 0.014 32.6 11.0 10 23-32 280-289 (988)
100 KOG4364 Chromatin assembly fac 22.6 1.7E+03 0.036 28.4 17.2 9 653-661 372-380 (811)
101 PF13340 DUF4096: Putative tra 21.6 77 0.0017 27.8 2.5 42 774-816 24-65 (75)
102 KOG2412 Nuclear-export-signal 20.6 4.7E+02 0.01 32.0 9.1 93 571-664 206-299 (591)
No 1
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=100.00 E-value=4e-39 Score=356.16 Aligned_cols=145 Identities=50% Similarity=0.770 Sum_probs=139.0
Q ss_pred cCCCCCCcHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH----HHhHhhhHHHHhhhhcCCCCcHHHHHhhc
Q 003030 709 SDGIEGESAQRCKARLERHRRTAERAAKALAEKNMRDLLAQREQAER----NRLAETLDADVKRWSSGKEGNLRALLSTL 784 (855)
Q Consensus 709 ~~~~~ge~~~r~kar~~r~~r~~er~akalaek~~rd~~~q~eq~Er----~~l~d~ld~kI~~W~~GKe~NIRALLSTL 784 (855)
+...-|...+++..+..+++++..+...++..+.-+|+.-+++++++ .+++|.||.+|..|+.||++|||||||||
T Consensus 302 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~k~~~~~ae~~~e~~r~~e~~d~~I~~W~~GKE~NIRALLSTL 381 (453)
T KOG0431|consen 302 GNTERGKRAESSSTRTKKQMDTFSDLLNPQGFKSTSDEKRPREIAEMRKELSRLMEPLDEEIRRWSEGKEGNIRALLSTL 381 (453)
T ss_pred ccccccccccccccccchhhhhhhhhhccccccchhhhhhHHHHHHHHHHHHhhcchHHHHHHHhcccccccHHHHHHHH
Confidence 44567888889999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred ccccCCCCCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 785 QYILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 785 ~~VLWp~~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
||||||+|||+||+|+|||||++|||+||||||||||||+++.|++++|||||+.||++|++||+.|..
T Consensus 382 h~VLW~es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~~ 450 (453)
T KOG0431|consen 382 HYVLWPESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFNQ 450 (453)
T ss_pred hHhhcCccCcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999864
No 2
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=98.55 E-value=1.2e-07 Score=77.16 Aligned_cols=54 Identities=26% Similarity=0.313 Sum_probs=47.2
Q ss_pred CccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 794 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 794 WkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
|.-|||...+++.+|+++|+++++.+|||++++. ...+...|..|+.||++|+.
T Consensus 4 y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~------~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 4 YEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD------KEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------hHHHHHHHHHHHHHHHHHcC
Confidence 5667888889999999999999999999998742 34688999999999999974
No 3
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=98.52 E-value=1.5e-07 Score=75.17 Aligned_cols=53 Identities=25% Similarity=0.321 Sum_probs=46.4
Q ss_pred CccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 794 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 794 WkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
|.-+|+...+++.+||++|++++..+|||+.++. ..+...|..|+.||++|+.
T Consensus 3 y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-------~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 3 YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-------PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------HHHHHHHHHHHHHHHHhcC
Confidence 4567788889999999999999999999998742 3688999999999999973
No 4
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=9.5e-08 Score=103.78 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=51.9
Q ss_pred cCCCCCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 788 LGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 788 LWp~~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
+-.-+-|+-|++...++..+||+||||++|++||||++.++ -|...|..|+.||+||+.
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp-------~A~e~F~~in~AYEVLsD 71 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDP-------NANEKFKEINAAYEVLSD 71 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH-------HHHHHHHHHHHHHHHhcC
Confidence 33345678899999999999999999999999999999643 599999999999999974
No 5
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.3e-07 Score=104.39 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=49.3
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
+.|.-|+|+.-+++.+|||||||+++++|||+++... -|+..|.+|++||++|+.
T Consensus 5 dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~-------~AeeKFKEI~eAYEVLsD 59 (371)
T COG0484 5 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDK-------EAEEKFKEINEAYEVLSD 59 (371)
T ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH-------HHHHHHHHHHHHHHHhCC
Confidence 4577899999999999999999999999999998422 589999999999999974
No 6
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.44 E-value=2.4e-07 Score=97.99 Aligned_cols=63 Identities=21% Similarity=0.290 Sum_probs=56.4
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCRY 854 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~~ 854 (855)
.-+.-|+++..+|+.+||++||++++.+||||+.+.|.+++..-.|...|..|+.||++|+..
T Consensus 201 ~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred hHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 345677889999999999999999999999999887888887778999999999999999864
No 7
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=98.38 E-value=4.3e-07 Score=75.21 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=47.0
Q ss_pred CccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 794 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 794 WkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
|.-|||..-++...|+++|++++..+|||++++.+ -.+...|..|+.||++|+.
T Consensus 3 y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~------~~~~~~~~~i~~Ay~~L~~ 56 (64)
T PF00226_consen 3 YEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE------AEAEEKFARINEAYEILSD 56 (64)
T ss_dssp HHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH------HHHHHHHHHHHHHHHHHHS
T ss_pred HHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh------hhhhHHHHHHHHHHHHhCC
Confidence 34578899999999999999999999999997532 3588999999999999975
No 8
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.32 E-value=5e-07 Score=99.18 Aligned_cols=55 Identities=24% Similarity=0.330 Sum_probs=47.9
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
.-|.-|+|...+|+.+||+||||+++++||||++... .|+..|..|++||++|+.
T Consensus 4 dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~-------~a~~~f~~i~~AYevLsd 58 (369)
T PRK14288 4 SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDK-------EAEEKFKLINEAYGVLSD 58 (369)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcc-------HHHHHHHHHHHHHHHhcc
Confidence 3467889999999999999999999999999987421 378899999999999973
No 9
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=98.31 E-value=7.8e-05 Score=83.25 Aligned_cols=13 Identities=8% Similarity=0.105 Sum_probs=8.7
Q ss_pred Hhhhhhhhhhhcc
Q 003030 652 VDRIFSEKFSASS 664 (855)
Q Consensus 652 ~~~~~~~~f~~~~ 664 (855)
.+..+.|+|.+..
T Consensus 255 ~e~~~dd~~~gl~ 267 (387)
T PRK09510 255 AAAEVDDLFGGLD 267 (387)
T ss_pred HHHHHHHHhhccc
Confidence 3556888887644
No 10
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.19 E-value=1.4e-06 Score=95.83 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=46.5
Q ss_pred CCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 793 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 793 gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
-|.-|+|...+++.+||+|||++++++|||+++. + -|+..|..|++||++|+.
T Consensus 6 yY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~-------~a~~~F~~i~~AyevLsD 58 (372)
T PRK14296 6 YYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-P-------DAHDKMVEINEAADVLLD 58 (372)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c-------hHHHHHHHHHHHHHHhcC
Confidence 4677889999999999999999999999999863 2 377899999999999974
No 11
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.17 E-value=1.7e-06 Score=95.81 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=47.7
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
.-|.-|+|..-+++.+||+|||++++++||||++... .|...|..|++||++|+.
T Consensus 10 Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~-------~a~~~f~~i~~Ay~vLsD 64 (392)
T PRK14279 10 DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDP-------AAEERFKAVSEAHDVLSD 64 (392)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh-------HHHHHHHHHHHHHHHhcc
Confidence 4467889999999999999999999999999986421 378899999999999974
No 12
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.16 E-value=1.9e-06 Score=94.65 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=47.1
Q ss_pred CCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 793 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 793 gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
-|.-|+|...+|+.+||+|||++++++||||++... -|...|..|++||++|+.
T Consensus 5 ~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~-------~a~~~f~~i~~Ay~vL~d 58 (365)
T PRK14285 5 YYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNK-------EAESIFKEATEAYEVLID 58 (365)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH-------HHHHHHHHHHHHHHHHcC
Confidence 466788999999999999999999999999986421 377899999999999975
No 13
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.8e-06 Score=91.71 Aligned_cols=53 Identities=30% Similarity=0.378 Sum_probs=46.8
Q ss_pred CccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 794 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 794 WkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
+.-|||...+|+.+|+++||+.+|.+||||+|.++ -|..-|..|.+||.+|++
T Consensus 8 Y~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP-------~A~ekFq~L~eAy~VL~D 60 (296)
T KOG0691|consen 8 YDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDP-------QAAEKFQELSEAYEVLSD 60 (296)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh-------HHHHHHHHHHHHHHHhcC
Confidence 34578889999999999999999999999998643 288999999999999975
No 14
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.5e-06 Score=96.04 Aligned_cols=61 Identities=25% Similarity=0.295 Sum_probs=52.9
Q ss_pred CCCCCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 789 GPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 789 Wp~~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
|...-|--|++..-+|+.+|++|||+.|+.+||||+. ++++|-.|+.+|..|..||++|+.
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~----dpd~K~~AE~~F~~i~~AyEVLsD 67 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHT----DPDQKKAAEEKFQRIQRAYEVLSD 67 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccC----ChhHHHHHHHHHHHHHHHHHHhcC
Confidence 4334455677888999999999999999999999986 578999999999999999999974
No 15
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.10 E-value=2.7e-06 Score=90.70 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=46.5
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
.-|.-|+|..-+|+.+||+|||++++++|||+++.. -|+..|..|++||++|+.
T Consensus 5 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------~~~~~f~~i~~Ay~~L~d 58 (291)
T PRK14299 5 DYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSP--------GAEEKFKEINEAYTVLSD 58 (291)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh--------hHHHHHHHHHHHHHHhcC
Confidence 346678899999999999999999999999998631 367899999999999974
No 16
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.09 E-value=3.1e-06 Score=93.75 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=48.3
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
.-|.-|+|..-+++.+||+|||++++.+|||+++... .|+..|..|++||++|+.
T Consensus 10 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~-------~a~~~f~~i~~Ay~vL~d 64 (389)
T PRK14295 10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDA-------KAEERFKEISEAYDVLSD 64 (389)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch-------hHHHHHHHHHHHHHHHCc
Confidence 4578889999999999999999999999999986421 478899999999999974
No 17
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.09 E-value=2.9e-06 Score=93.35 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=46.7
Q ss_pred CCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 793 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 793 gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
-|.-|+|...++..+||+|||++++++|||+++... .|...|..|++||++|+.
T Consensus 6 ~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~-------~a~~~f~~i~~Ay~vL~d 59 (372)
T PRK14286 6 YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNK-------ESEEKFKEATEAYEILRD 59 (372)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch-------HHHHHHHHHHHHHHHhcc
Confidence 456788999999999999999999999999986421 378899999999999974
No 18
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.09 E-value=3e-06 Score=93.65 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=47.9
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
.-|.-|+|...++..+||+|||++++++|||+++... .|+..|..|++||++|+.
T Consensus 6 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~-------~a~~~f~~i~~Ay~vL~d 60 (386)
T PRK14277 6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDK-------EAEQKFKEINEAYEILSD 60 (386)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch-------HHHHHHHHHHHHHHHhCC
Confidence 4577889999999999999999999999999987421 378899999999999974
No 19
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.09 E-value=3.1e-06 Score=92.77 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=47.5
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
.-|.-|+|..-++..+||+|||++++.+|||+++... .|...|..|++||++|+.
T Consensus 5 d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~-------~a~~~f~~i~~Ay~~L~d 59 (371)
T PRK10767 5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDK-------EAEEKFKEIKEAYEVLSD 59 (371)
T ss_pred ChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcH-------HHHHHHHHHHHHHHHhcc
Confidence 3467788999999999999999999999999986321 378899999999999974
No 20
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.07 E-value=3.5e-06 Score=92.78 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=47.8
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
.-|.-|+|...+++.+||+|||++++++|||+++. + -|...|..|++||++|+.
T Consensus 6 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~-------~a~~~f~~i~~Ay~~Lsd 59 (378)
T PRK14283 6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-E-------GAEEKFKEISEAYAVLSD 59 (378)
T ss_pred ChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c-------cHHHHHHHHHHHHHHhch
Confidence 45778899999999999999999999999999863 1 378899999999999975
No 21
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.05 E-value=4e-06 Score=91.97 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=47.1
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
.-|.-|+|...++..+||+|||++++++|||+++... .|+..|..|++||++|+.
T Consensus 5 d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~-------~~~~~f~~~~~Ay~vL~d 59 (366)
T PRK14294 5 DYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDK-------EAEELFKEAAEAYEVLSD 59 (366)
T ss_pred ChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCch-------HHHHHHHHHHHHHHHhcc
Confidence 3466788888999999999999999999999987421 377899999999999974
No 22
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.05 E-value=4.1e-06 Score=89.76 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=47.1
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
.-|.-|+++..++..+||++||++++++|||+++.. .|...|..|++||++|+.
T Consensus 5 d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~--------~~~~~f~~i~~Ay~~L~~ 58 (306)
T PRK10266 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP--------DAEARFKEVAEAWEVLSD 58 (306)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------cHHHHHHHHHHHHHHhhh
Confidence 346778899999999999999999999999997521 478999999999999974
No 23
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.03 E-value=4.9e-06 Score=92.33 Aligned_cols=54 Identities=24% Similarity=0.319 Sum_probs=46.8
Q ss_pred CCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 793 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 793 gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
-|.-|+|+.-++..+||+|||++++++|||+++... .|...|..|++||++|+.
T Consensus 5 ~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~-------~a~~~f~~i~~Ay~vL~d 58 (397)
T PRK14281 5 YYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNK-------EAEEHFKEVNEAYEVLSN 58 (397)
T ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch-------HHHHHHHHHHHHHHHhhh
Confidence 466788888999999999999999999999986421 477899999999999975
No 24
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.02 E-value=4.8e-06 Score=91.69 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=46.9
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
.-|.-|+|...+++.+||+|||++++.+|||+++.. .|+..|..|++||++|+.
T Consensus 5 ~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------~a~~~f~~i~~Ay~vL~d 58 (376)
T PRK14280 5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE--------GADEKFKEISEAYEVLSD 58 (376)
T ss_pred ChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------cHHHHHHHHHHHHHHhcc
Confidence 346778899999999999999999999999998632 277899999999999973
No 25
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.02 E-value=4.9e-06 Score=91.75 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=46.7
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
.-|.-|+|...+|..+||+|||++++++|||+++.. -|...|..|++||++|+.
T Consensus 5 d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------~a~~~f~~i~~Ay~vL~d 58 (380)
T PRK14276 5 EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP--------GAEEKYKEVQEAYETLSD 58 (380)
T ss_pred CHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------CHHHHHHHHHHHHHHhcC
Confidence 346678899999999999999999999999998732 267889999999999974
No 26
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.02 E-value=4.8e-06 Score=91.76 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=47.6
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
.-|.-|+|+.-++..+||+|||++++.+|||+++... .|+..|..|++||++|+.
T Consensus 5 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~-------~a~~~f~~i~~Ay~vL~d 59 (380)
T PRK14297 5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNK-------EAEEKFKEINEAYQVLSD 59 (380)
T ss_pred ChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcH-------HHHHHHHHHHHHHHHhcC
Confidence 3467788999999999999999999999999987421 478899999999999974
No 27
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.01 E-value=5.5e-06 Score=91.25 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=46.4
Q ss_pred CCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 793 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 793 gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
-|.-|+|..-++..+||+|||++++.+||||++... -|+..|..|++||++|+.
T Consensus 6 ~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~-------~a~~~f~~i~~Ay~vL~d 59 (373)
T PRK14301 6 YYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNP-------EAEQKFKEAAEAYEVLRD 59 (373)
T ss_pred hHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCCh-------HHHHHHHHHHHHHHHhcc
Confidence 466778888999999999999999999999987421 377889999999999974
No 28
>PRK14287 chaperone protein DnaJ; Provisional
Probab=97.99 E-value=5.7e-06 Score=91.11 Aligned_cols=53 Identities=25% Similarity=0.217 Sum_probs=46.1
Q ss_pred CCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 793 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 793 gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
-|.-|+|..-+++.+||+|||++++.+|||+++. . -|+..|..|++||++|+.
T Consensus 6 ~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~-------~~~~~f~~i~~Ay~~L~d 58 (371)
T PRK14287 6 YYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-P-------DAEDKFKEVKEAYDTLSD 58 (371)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-h-------hHHHHHHHHHHHHHHhCc
Confidence 4667889999999999999999999999999862 1 367899999999999963
No 29
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=97.99 E-value=5.2e-06 Score=93.12 Aligned_cols=50 Identities=26% Similarity=0.351 Sum_probs=43.7
Q ss_pred CCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 793 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 793 gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
-|.-|+|...+|+.+||+|||++++++||||++. ...|..|++||++|+.
T Consensus 30 ~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-----------~e~F~~i~~AYevLsD 79 (421)
T PTZ00037 30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-----------PEKFKEISRAYEVLSD 79 (421)
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-----------HHHHHHHHHHHHHhcc
Confidence 3667889999999999999999999999999741 2689999999999963
No 30
>PRK14282 chaperone protein DnaJ; Provisional
Probab=97.98 E-value=6.5e-06 Score=90.44 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=47.8
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
.-|+-|+|+..+++.+||+|||++++++|||+++.. .-.|...|..|++||++|+.
T Consensus 5 d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~------~~~a~~~f~~i~~Ay~vL~d 60 (369)
T PRK14282 5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN------RKEAEQKFKEIQEAYEVLSD 60 (369)
T ss_pred ChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc------hhHHHHHHHHHHHHHHHhcC
Confidence 446778899999999999999999999999998641 11478899999999999974
No 31
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=4.7e-06 Score=93.78 Aligned_cols=56 Identities=23% Similarity=0.327 Sum_probs=49.2
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
|.|.-|+|..-+++..||++|||++|.+||||++. + + .-|...|.+|+.||+||+.
T Consensus 9 c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd-~--i---eeat~~F~~i~aAYeVLSd 64 (508)
T KOG0717|consen 9 CYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPD-R--I---EEATQQFQLIQAAYEVLSD 64 (508)
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCc-c--H---HHHHHHHHHHHHHHHHhcC
Confidence 56778899999999999999999999999999863 2 2 3589999999999999974
No 32
>PRK14298 chaperone protein DnaJ; Provisional
Probab=97.93 E-value=8.1e-06 Score=90.14 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=46.7
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
.-|.-|++..-++..+||+|||++++++|||+++.. -|+..|..|++||++|+.
T Consensus 6 d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------~~~~~f~~i~~Ay~vL~d 59 (377)
T PRK14298 6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP--------DAEEKFKEISEAYAVLSD 59 (377)
T ss_pred CHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCCh--------hHHHHHHHHHHHHHHhcc
Confidence 346778899999999999999999999999998631 367899999999999974
No 33
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=1.2e-05 Score=85.90 Aligned_cols=52 Identities=27% Similarity=0.360 Sum_probs=43.9
Q ss_pred ccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 795 HPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 795 kpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
.-||+...+|..+|||+||++++++||||++..+ -+...|++||.||.+|+.
T Consensus 35 dVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P-------~~~dkf~eIN~Ay~ILsD 86 (279)
T KOG0716|consen 35 DVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNP-------EATDKFKEINTAYAILSD 86 (279)
T ss_pred HHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCc-------hhHHHHHHHHHHHHHhcC
Confidence 3456777899999999999999999999997532 366889999999999974
No 34
>PRK14290 chaperone protein DnaJ; Provisional
Probab=97.91 E-value=1.2e-05 Score=88.19 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=48.3
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
+-|.-|++...++..+||+|||++++++|||+++.. ...|...|..|++||++|+.
T Consensus 4 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~------~~~a~~~f~~i~~Ay~~L~d 59 (365)
T PRK14290 4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN------KAEAEEKFKEISEAYEVLSD 59 (365)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------hhHHHHHHHHHHHHHHHhcC
Confidence 457788999999999999999999999999998632 12488999999999999975
No 35
>PHA03102 Small T antigen; Reviewed
Probab=97.86 E-value=1.6e-05 Score=78.78 Aligned_cols=45 Identities=24% Similarity=0.221 Sum_probs=37.4
Q ss_pred ccccC--ChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 003030 799 LTEVI--TSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCRY 854 (855)
Q Consensus 799 msdL~--tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~~ 854 (855)
|...+ |..+||++||++++.+||||.+ + ...|..||.||.+|+..
T Consensus 13 l~~~A~~s~~eIKkAYr~la~~~HPDkgg----~-------~e~~k~in~Ay~~L~d~ 59 (153)
T PHA03102 13 LPRSAWGNLPLMRKAYLRKCLEFHPDKGG----D-------EEKMKELNTLYKKFRES 59 (153)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCcCCCc----h-------hHHHHHHHHHHHHHhhH
Confidence 45556 8999999999999999999953 1 25899999999999753
No 36
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=2.2e-05 Score=75.05 Aligned_cols=54 Identities=22% Similarity=0.349 Sum_probs=46.1
Q ss_pred CccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 794 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 794 WkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
|.-|+|...++...|+++||++++.+|||+++... . .|...|..|++||.+|+.
T Consensus 9 y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~---~---~a~~~f~~i~~Ay~vLsd 62 (237)
T COG2214 9 YEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDP---K---VAEEKFKEINEAYEILSD 62 (237)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---h---HHHHHHHHHHHHHHHhhC
Confidence 44566778899999999999999999999998532 1 588999999999999975
No 37
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=97.80 E-value=3.9e-05 Score=76.75 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=45.8
Q ss_pred CCccc--cCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 003030 797 IPLTE--VITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCRY 854 (855)
Q Consensus 797 Vgmsd--L~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~~ 854 (855)
+|+.. -+++..|+++||++...+|||+.++ .+...+.+|...|..||.||.+|+..
T Consensus 7 lgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~--~~~~~~~~a~~~s~~iN~AY~~L~dp 64 (171)
T PRK05014 7 FGLPARYDIDTQLLASRYQELQRQFHPDKFAN--ASERERLLAVQQAATINDAYQTLKHP 64 (171)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCC--CcHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 34444 4788999999999999999999874 34455667888999999999999864
No 38
>PRK14289 chaperone protein DnaJ; Provisional
Probab=97.78 E-value=2.3e-05 Score=86.51 Aligned_cols=55 Identities=24% Similarity=0.286 Sum_probs=47.0
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
.-|.-|+|..-++..+||+|||++++.+|||+++... .|...|..|++||++|+.
T Consensus 6 ~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~-------~a~~~f~~i~~Ay~~L~d 60 (386)
T PRK14289 6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDK-------EAEEKFKEAAEAYDVLSD 60 (386)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCh-------HHHHHHHHHHHHHHHhcC
Confidence 3466778888999999999999999999999987421 378899999999999973
No 39
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=97.71 E-value=3.4e-05 Score=73.67 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=41.6
Q ss_pred CCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 793 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 793 gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
-+.-|++...+|..+|+++||++++.+|||+. | + ...|..|++||++|.+
T Consensus 67 Ay~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---G-s-------~~~~~kIneAyevL~k 116 (116)
T PTZ00100 67 AYKILNISPTASKERIREAHKQLMLRNHPDNG---G-S-------TYIASKVNEAKDLLLK 116 (116)
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---C-C-------HHHHHHHHHHHHHHhC
Confidence 35567788889999999999999999999983 2 2 2478899999999863
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=97.64 E-value=4.8e-05 Score=92.05 Aligned_cols=54 Identities=9% Similarity=-0.025 Sum_probs=47.2
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
.-+.-||++..+++..||+|||++++++||||++.. .|...|..|++||.+|+.
T Consensus 574 dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~--------~A~ekFq~I~EAYeVLSD 627 (1136)
T PTZ00341 574 LFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN--------EGFHKFKKINEAYQILGD 627 (1136)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------hHHHHHHHHHHHHHHhCC
Confidence 346678999999999999999999999999998741 267799999999999974
No 41
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=4.7e-05 Score=78.76 Aligned_cols=52 Identities=31% Similarity=0.460 Sum_probs=44.0
Q ss_pred ccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 003030 795 HPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSC 852 (855)
Q Consensus 795 kpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk 852 (855)
.-|.|..-++..+||+-||++.|.|||||++.+ ..-|...|++|..||..|-
T Consensus 57 eVLqIdpev~~edikkryRklSilVHPDKN~Dd------~~rAqkAFdivkKA~k~l~ 108 (250)
T KOG1150|consen 57 EVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD------AERAQKAFDIVKKAYKLLE 108 (250)
T ss_pred HHHhcCCCCCHHHHHHHHHhhheeecCCCCccc------HHHHHHHHHHHHHHHHHHh
Confidence 345567778899999999999999999999852 2369999999999999874
No 42
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=97.59 E-value=0.00012 Score=73.78 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=43.1
Q ss_pred ccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 801 EVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 801 dL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
--+++.+|+++||++...+|||+.++ .+...+.+|...|..||.||.+|+.
T Consensus 16 f~id~~~L~~~Yr~Lq~~~HPDk~~~--~~~~e~~~a~~~s~~IN~AY~~L~~ 66 (173)
T PRK00294 16 FRLDLDQLATRYRELAREVHPDRFAD--APEREQRLALERSASLNEAYQTLKS 66 (173)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCC--CcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35789999999999999999999874 3444566788889999999999974
No 43
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=8.3e-05 Score=78.36 Aligned_cols=56 Identities=23% Similarity=0.336 Sum_probs=49.9
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSC 852 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk 852 (855)
+-|.-|||...+++..|++||+|+.|.+|||+++ -+++--|..-|..|+.||.+|+
T Consensus 15 d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~-----eed~~ea~~kFq~l~k~y~iLs 70 (264)
T KOG0719|consen 15 DLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH-----EEDKVEATEKFQQLQKAYQILS 70 (264)
T ss_pred CHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch-----hhhHHHHHHHHHHHHHHHHHhh
Confidence 4566788999999999999999999999999986 3667789999999999999995
No 44
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=6e-05 Score=85.14 Aligned_cols=70 Identities=27% Similarity=0.338 Sum_probs=53.6
Q ss_pred CcHHHHHhhcccccCCCCCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 003030 775 GNLRALLSTLQYILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSC 852 (855)
Q Consensus 775 ~NIRALLSTL~~VLWp~~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk 852 (855)
.|.+-+---|-.++=.-.-+--+|+..-+++++|||.|||.+..|||||+-.. .|+.+|..|..||+++.
T Consensus 219 ~n~t~~adrl~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~--------~A~Eafk~Lq~Afevig 288 (490)
T KOG0720|consen 219 TNATSFADRLSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP--------RAEEAFKKLQVAFEVIG 288 (490)
T ss_pred cchhhHHHhhhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh--------hHHHHHHHHHHHHHHhc
Confidence 34444333344333112346678888999999999999999999999999853 58999999999999986
No 45
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=97.57 E-value=0.00013 Score=73.47 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=45.2
Q ss_pred cCCccc--cCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 796 PIPLTE--VITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 796 pVgmsd--L~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
-+|+.. -+++..|+++||++...+|||+.++. +...+.+|...+..||.||.+|+.
T Consensus 11 llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~--~~~e~~~a~~~s~~iN~AY~tL~~ 68 (176)
T PRK03578 11 LFGLPARFALDEAALDAAYRTVQAQVHPDRFAAA--GDAEKRVAMQWATRANEAYQTLRD 68 (176)
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--CHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444 47899999999999999999999753 444566788889999999999974
No 46
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=97.51 E-value=0.00016 Score=72.25 Aligned_cols=54 Identities=20% Similarity=0.157 Sum_probs=42.8
Q ss_pred cCCccc--cCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 796 PIPLTE--VITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 796 pVgmsd--L~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
-+||.. -+++..|+++|+++.+.+||||.++ ...+..+-..|..||+||.+|+.
T Consensus 7 llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~----~~~k~~~~~~s~~in~AY~~L~d 62 (166)
T PRK01356 7 LLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT----LQEKEQNLIIASELNNAYSTLKD 62 (166)
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 345554 3788999999999999999999752 23455666789999999999973
No 47
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=97.49 E-value=0.00016 Score=71.57 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=41.5
Q ss_pred CChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 803 ITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 803 ~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
+++..|+++||++...+|||+.++. +...+.+|...|..||+||.+|+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~--~~~~~~~a~~~s~~iN~AY~~L~~ 51 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASG--SAQEQLAAVQQSTTLNQAYQTLKD 51 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCC--ChhhhHHHHHHHHHHHHHHHHhCC
Confidence 6789999999999999999998753 333456788899999999999974
No 48
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00017 Score=77.70 Aligned_cols=59 Identities=19% Similarity=0.284 Sum_probs=53.0
Q ss_pred ccCCCCCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 787 ILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 787 VLWp~~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
++|....+.-||+..-++..+||+||++++-++|||-+... .|...|..|.+||++|+.
T Consensus 39 ~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~--------~a~~kF~eI~~AYEiLsd 97 (288)
T KOG0715|consen 39 IISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK--------EASKKFKEISEAYEILSD 97 (288)
T ss_pred cCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc--------chhhHHHHHHHHHHHhcC
Confidence 45766788899999999999999999999999999999753 589999999999999974
No 49
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00018 Score=75.16 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=43.6
Q ss_pred CccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 003030 794 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSC 852 (855)
Q Consensus 794 WkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk 852 (855)
+.=||++..++..+|||+||++.+++||||++..+. -+.-|+.|+.||..|.
T Consensus 102 yEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~-------~e~~~~~I~KAY~aLT 153 (230)
T KOG0721|consen 102 YEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEG-------DEEFFEAIAKAYQALT 153 (230)
T ss_pred HHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcch-------hHHHHHHHHHHHHHhc
Confidence 445889999999999999999999999999975322 3577899999998874
No 50
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00024 Score=79.89 Aligned_cols=97 Identities=22% Similarity=0.270 Sum_probs=72.9
Q ss_pred HHHHHHhHhhhHHHHhhhhc----CCCCcHHHHHhhccccc----CCCCCCccCCccccCChhHHHHHHHHhhhhcCCCc
Q 003030 752 QAERNRLAETLDADVKRWSS----GKEGNLRALLSTLQYIL----GPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDK 823 (855)
Q Consensus 752 q~Er~~l~d~ld~kI~~W~~----GKe~NIRALLSTL~~VL----Wp~~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDK 823 (855)
.+.=+.+.+.+..-|..... -+.-+||-+|-..+.-| | -.-++-||+..+++...||++|||+.|.+|||+
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR-kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~ 405 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR-KDWYKILGISRNASDDEIKKAYRKLALVHHPDK 405 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh-hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCc
Confidence 34444555555555554432 34456888887776555 3 223667899999999999999999999999999
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHhhhcC
Q 003030 824 LQQRGASIQQKYICEKVFDLLKVSLLLSCRYH 855 (855)
Q Consensus 824 l~~~gat~Eqk~iAe~VF~~LneAwevLk~~h 855 (855)
+.+. ++-|+..|+.+.+||.+|+.||
T Consensus 406 ~ags------q~eaE~kFkevgeAy~il~d~~ 431 (486)
T KOG0550|consen 406 NAGS------QKEAEAKFKEVGEAYTILSDPM 431 (486)
T ss_pred Ccch------hHHHHHHHHHHHHHHHHhcCHH
Confidence 9742 5789999999999999999875
No 51
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=97.06 E-value=0.046 Score=60.33 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=13.7
Q ss_pred hhcccccCCCC---CCccCCccccCChhHH
Q 003030 782 STLQYILGPDS---GWHPIPLTEVITSAAV 808 (855)
Q Consensus 782 STL~~VLWp~~---gWkpVgmsdL~tp~~V 808 (855)
|.|+.-|-|+- +++++|-++-++...|
T Consensus 328 C~l~ikL~pdGtl~~~~~~~Gd~~lCqAal 357 (387)
T COG3064 328 CRLRIKLAPDGTLLDIKPEGGDPALCQAAL 357 (387)
T ss_pred eEEEEEEcCCcceeeccccCCChHHHHHHH
Confidence 44444444432 4566666665555544
No 52
>PHA02624 large T antigen; Provisional
Probab=97.00 E-value=0.00056 Score=80.35 Aligned_cols=47 Identities=23% Similarity=0.199 Sum_probs=38.4
Q ss_pred CCccccC--ChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 003030 797 IPLTEVI--TSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCRY 854 (855)
Q Consensus 797 VgmsdL~--tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~~ 854 (855)
||+...+ +...||++||++++.+||||. | + ...|..|+.||++|+.+
T Consensus 17 LGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---G-d-------eekfk~Ln~AYevL~d~ 65 (647)
T PHA02624 17 LGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---G-D-------EEKMKRLNSLYKKLQEG 65 (647)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---C-c-------HHHHHHHHHHHHHHhcH
Confidence 3455555 899999999999999999994 2 2 35899999999999764
No 53
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=96.74 E-value=0.0016 Score=74.04 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=56.4
Q ss_pred HHHHHhhcccccCCCCCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 003030 777 LRALLSTLQYILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSC 852 (855)
Q Consensus 777 IRALLSTL~~VLWp~~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk 852 (855)
||. |+-+-.=+| +-+.-||++.-.+..+||++||++..++||||++. ...+.+..-+..+..|+.||..|.
T Consensus 87 I~~-~k~~~~~~f--DPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~--mvn~~rse~Ee~y~~ItkAY~~lT 157 (610)
T COG5407 87 IRT-LKIEYRRGF--DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPP--MVNELRSEYEEKYKTITKAYGLLT 157 (610)
T ss_pred HHH-HHHHHHcCC--ChHHhhcccCCCcHHHHHHHHHhheeecChhhcCC--CChhHHHHHHHHHHHHHHHHHhhh
Confidence 444 333333445 34556889999999999999999999999999984 566778888999999999999875
No 54
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0014 Score=72.26 Aligned_cols=36 Identities=31% Similarity=0.426 Sum_probs=31.2
Q ss_pred CCCCccCCccccCChhHHHHHHHHhhhhcCCCcccC
Q 003030 791 DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQ 826 (855)
Q Consensus 791 ~~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~ 826 (855)
-.-+.-|+++..+|+..|||||||+.+++||||++.
T Consensus 4 ~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~ 39 (337)
T KOG0712|consen 4 TKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD 39 (337)
T ss_pred cccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc
Confidence 334556778899999999999999999999999984
No 55
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=96.51 E-value=0.31 Score=55.35 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH
Q 003030 519 ERVKRQRELEIERLRRIEEERE 540 (855)
Q Consensus 519 e~~~rere~eke~~r~~~E~~e 540 (855)
+.+..+++.+.++++++.+++.
T Consensus 90 eel~~~~~~eq~rlk~le~er~ 111 (387)
T PRK09510 90 EELQQKQAAEQERLKQLEKERL 111 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666554443
No 56
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0022 Score=64.77 Aligned_cols=51 Identities=27% Similarity=0.380 Sum_probs=40.3
Q ss_pred CCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 797 IPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 797 VgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
+++..-+++.+|++||+++++.+||||++.. +..|...|..+.+||++|+.
T Consensus 9 l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~------~~~~~~~~~~~~ea~~~ls~ 59 (306)
T KOG0714|consen 9 LGIARSASEEDIKKAYRKLALKYHPDKNPSP------KEVAEAKFKEIAEAYEVLSD 59 (306)
T ss_pred hCccccccHHHHHHHHHHHHHhhCCCCCCCc------hhhHHHHHhhhhccccccCC
Confidence 4555556666999999999999999997632 34566699999999998764
No 57
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.37 E-value=0.0027 Score=70.71 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=30.9
Q ss_pred CCccCCccccCChhHHHHHHHHhhhhcCCCcccC
Q 003030 793 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQ 826 (855)
Q Consensus 793 gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~ 826 (855)
-|.-|+|..-+++.+||+|||++++++|||+++.
T Consensus 3 ~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~ 36 (391)
T PRK14284 3 YYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPG 36 (391)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 3667889999999999999999999999999874
No 58
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=96.33 E-value=0.55 Score=52.22 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=7.5
Q ss_pred hhhhhhhhhhcc
Q 003030 653 DRIFSEKFSASS 664 (855)
Q Consensus 653 ~~~~~~~f~~~~ 664 (855)
..++.|+|.+.+
T Consensus 258 ~aaldD~fg~ls 269 (387)
T COG3064 258 AAALDDIFGGLS 269 (387)
T ss_pred HhhHHHHhcccc
Confidence 455677777643
No 59
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.31 E-value=0.0043 Score=68.78 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=31.3
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCccc
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQ 825 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~ 825 (855)
.-|+-|+|..-+++.+||+|||++++.+|||+++
T Consensus 4 ~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~ 37 (372)
T PRK14300 4 DYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD 37 (372)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC
Confidence 4578889999999999999999999999999986
No 60
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=96.15 E-value=0.56 Score=52.41 Aligned_cols=18 Identities=17% Similarity=-0.101 Sum_probs=9.5
Q ss_pred hhHHHHHHHHhhhhcCCC
Q 003030 805 SAAVKKAYRKATLCVHPD 822 (855)
Q Consensus 805 p~~VKKAYRKAiLkvHPD 822 (855)
+..+-.+-..+|..+-|-
T Consensus 308 d~~lD~AAl~AV~ka~p~ 325 (346)
T TIGR02794 308 DPALCQAALAAVAKAAKL 325 (346)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 334555555666555443
No 61
>PRK14291 chaperone protein DnaJ; Provisional
Probab=96.15 E-value=0.0057 Score=68.03 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=30.6
Q ss_pred CCccCCccccCChhHHHHHHHHhhhhcCCCcccC
Q 003030 793 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQ 826 (855)
Q Consensus 793 gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~ 826 (855)
-|.-|++...++..+||+|||++++++|||+++.
T Consensus 5 ~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~ 38 (382)
T PRK14291 5 YYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN 38 (382)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Confidence 4667889999999999999999999999999874
No 62
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.07 E-value=0.0058 Score=67.95 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=31.0
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCccc
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQ 825 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~ 825 (855)
.-|.-|+|...+++.+||+|||++++++|||+++
T Consensus 4 d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~ 37 (378)
T PRK14278 4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP 37 (378)
T ss_pred CcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Confidence 3467889999999999999999999999999986
No 63
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=96.01 E-value=0.014 Score=59.03 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=43.8
Q ss_pred cCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 802 VITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 802 L~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
-+++..+++.|+.+...+|||+..+ .+...+.+|...=..||+||.+|+.
T Consensus 15 ~iD~~~L~~~y~~Lq~~~HPD~f~~--~~~~eq~~a~~~ss~iN~AY~tLkd 64 (173)
T PRK01773 15 QLDNALLSERYLALQKSLHPDNFAN--SSAQEQRLAMQKSAEVNDALQILKD 64 (173)
T ss_pred CCCHHHHHHHHHHHHHHhCcCcccC--CCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5889999999999999999999975 3566677888889999999999974
No 64
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=95.94 E-value=0.0074 Score=66.16 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=29.2
Q ss_pred CccCCccccCChhHHHHHHHHhhhhcCCCccc
Q 003030 794 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQ 825 (855)
Q Consensus 794 WkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~ 825 (855)
|.-|+|...++..+||+|||++++++|||+++
T Consensus 3 y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~ 34 (354)
T TIGR02349 3 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNK 34 (354)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Confidence 45678888899999999999999999999986
No 65
>PTZ00121 MAEBL; Provisional
Probab=95.93 E-value=0.44 Score=60.91 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 003030 726 RHRRTAERAAKAL 738 (855)
Q Consensus 726 r~~r~~er~akal 738 (855)
-|+|..+++.++-
T Consensus 1287 Ee~r~a~~~kk~e 1299 (2084)
T PTZ00121 1287 EEKKKADEAKKAE 1299 (2084)
T ss_pred HHHHHHHHHhhHH
Confidence 3444444444433
No 66
>PRK14293 chaperone protein DnaJ; Provisional
Probab=95.87 E-value=0.01 Score=65.86 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=31.5
Q ss_pred CCCccCCccccCChhHHHHHHHHhhhhcCCCcccC
Q 003030 792 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQ 826 (855)
Q Consensus 792 ~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~ 826 (855)
+-|.-|++...+++.+||+|||++++.+|||+++.
T Consensus 4 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~ 38 (374)
T PRK14293 4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE 38 (374)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Confidence 45778889999999999999999999999999863
No 67
>PRK14292 chaperone protein DnaJ; Provisional
Probab=95.71 E-value=0.0094 Score=65.92 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=29.9
Q ss_pred CCccCCccccCChhHHHHHHHHhhhhcCCCccc
Q 003030 793 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQ 825 (855)
Q Consensus 793 gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~ 825 (855)
-|.-|+|...+++.+||+|||++++++|||+++
T Consensus 4 ~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~ 36 (371)
T PRK14292 4 YYELLGVSRTASADEIKSAYRKLALKYHPDRNK 36 (371)
T ss_pred hHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Confidence 356678888999999999999999999999986
No 68
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.019 Score=70.66 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=34.7
Q ss_pred hhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 003030 805 SAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSC 852 (855)
Q Consensus 805 p~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk 852 (855)
|..|+++|+|+..++||||+|- ....|-.+|.||+.|+
T Consensus 1299 ~~KirrqY~kLA~kYHPDKNPE----------GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1299 PAKIRRQYYKLAAKYHPDKNPE----------GREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHHHHHHHHHHhCCCCCch----------HHHHHHHHHHHHHHHH
Confidence 5899999999999999999983 3589999999999987
No 69
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.008 Score=64.65 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=45.3
Q ss_pred CCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 793 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 793 gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
-+.-||++.-.+..+|.+|||++.+.+|||+++... +...|..|..||++|+.
T Consensus 35 CYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e--------~k~~F~~iAtayeilkd 87 (329)
T KOG0722|consen 35 CYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE--------SKKLFVKIATAYEILKD 87 (329)
T ss_pred HHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch--------hhhhhhhhhcccccccc
Confidence 356789999999999999999999999999998432 34889999999998863
No 70
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.035 Score=60.30 Aligned_cols=77 Identities=27% Similarity=0.360 Sum_probs=54.8
Q ss_pred HHhHhhhHHHHhhhhcCCCCcHHHHHhhcccccCCCCCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHH
Q 003030 756 NRLAETLDADVKRWSSGKEGNLRALLSTLQYILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKY 835 (855)
Q Consensus 756 ~~l~d~ld~kI~~W~~GKe~NIRALLSTL~~VLWp~~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~ 835 (855)
+.+.+-+-...+.|.. -++.+||.---| .+ -++|.+|.++.++-++.+||||... |.+.
T Consensus 27 ~~~~~~~~~d~k~Wk~---~DlYa~lgLsky------R~-------ka~~~qi~kah~kkv~kyHPDk~aa-~g~~---- 85 (379)
T COG5269 27 NVLNLYTREDFKNWKK---VDLYALLGLSKY------RT-------KAIPPQILKAHKKKVYKYHPDKTAA-GGNK---- 85 (379)
T ss_pred hHHHHHHhhhhhhhhh---hhHHHHhchHhh------hc-------CCCcHHHHHHHHHHHHHhCccchhc-cCCC----
Confidence 3444555556777865 467776532111 11 4578899999999999999999954 3343
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 003030 836 ICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 836 iAe~VF~~LneAwevLk~ 853 (855)
-|...|..|+.||++|..
T Consensus 86 ~~d~fFk~iqkA~evL~D 103 (379)
T COG5269 86 GCDEFFKLIQKAREVLGD 103 (379)
T ss_pred CcHHHHHHHHHHHHHhcc
Confidence 478999999999999864
No 71
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.092 Score=50.32 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=37.8
Q ss_pred CCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 003030 797 IPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSC 852 (855)
Q Consensus 797 VgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk 852 (855)
|+++..++...||.++||+.+.-|||+..+ | |+|. .||+|+++|.
T Consensus 62 L~v~~s~~k~KikeaHrriM~~NHPD~GGS----P---YlAs----KINEAKdlLe 106 (112)
T KOG0723|consen 62 LGVTPSLDKDKIKEAHRRIMLANHPDRGGS----P---YLAS----KINEAKDLLE 106 (112)
T ss_pred hCCCccccHHHHHHHHHHHHHcCCCcCCCC----H---HHHH----HHHHHHHHHh
Confidence 567788999999999999999999999753 2 6775 4699999875
No 72
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=92.89 E-value=0.12 Score=58.28 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=52.4
Q ss_pred CCCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 791 DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 791 ~~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
-..|+-||+-.-++--.|-|||||++.++|||--+ +.+.+-.|+..|.-|..|-+||+.
T Consensus 394 RDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFq----dEeEKKkAEKKFIDIAAAKEVLsd 452 (504)
T KOG0624|consen 394 RDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQ----DEEEKKKAEKKFIDIAAAKEVLSD 452 (504)
T ss_pred chHHHHhhhcccccHHHHHHHHHHHHHhcCCcccc----CHHHHHHHHHhhhhHHHHHHhhcC
Confidence 45688899999999999999999999999999886 356688999999999999999863
No 73
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=92.85 E-value=8 Score=43.49 Aligned_cols=21 Identities=43% Similarity=0.518 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003030 614 EARLRAERAAVERATVEARERA 635 (855)
Q Consensus 614 EAr~kAERaAvErA~aEAr~rA 635 (855)
+|+.+||. |-+.|.++|..++
T Consensus 193 eak~kae~-a~~ka~~ea~~ka 213 (346)
T TIGR02794 193 EAKAKAEA-AKAKAAAEAAAKA 213 (346)
T ss_pred HHHHHHHH-HHHhhhhhHHHHH
Confidence 34444444 4444444443333
No 74
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=92.23 E-value=0.15 Score=61.87 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=29.4
Q ss_pred CccCCccccCChhHHHHHHHHhhhhcCCCcccC
Q 003030 794 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQ 826 (855)
Q Consensus 794 WkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~ 826 (855)
|.-|||...++..+||++||++++++|||+++.
T Consensus 5 YeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~ 37 (871)
T TIGR03835 5 YEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA 37 (871)
T ss_pred hHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 556788889999999999999999999999864
No 75
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=0.21 Score=50.19 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=50.7
Q ss_pred CccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHh
Q 003030 794 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLS 851 (855)
Q Consensus 794 WkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevL 851 (855)
...+++..-.+...|+++|++++-..|||+....|.+++--.++...+..|++||..+
T Consensus 116 l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 116 LKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred HHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555567788999999999999999999998888998999999999999999865
No 76
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.29 E-value=79 Score=39.72 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=7.9
Q ss_pred cchhhhhHHHHHH
Q 003030 511 LTSKDKDAERVKR 523 (855)
Q Consensus 511 ~~~~~~~~e~~~r 523 (855)
.+-|||.++.++|
T Consensus 312 ~TFEDKrkeNy~k 324 (1118)
T KOG1029|consen 312 VTFEDKRKENYEK 324 (1118)
T ss_pred cchhhhhHHhHhh
Confidence 3457777765544
No 77
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=59.79 E-value=2.2e+02 Score=34.98 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=6.4
Q ss_pred CCCCCcHHHhH
Q 003030 711 GIEGESAQRCK 721 (855)
Q Consensus 711 ~~~ge~~~r~k 721 (855)
.|+|-+++|..
T Consensus 794 ~~hGGp~erHg 804 (940)
T KOG4661|consen 794 TVHGGPSERHG 804 (940)
T ss_pred ccCCCchhhcc
Confidence 35677775543
No 78
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=58.99 E-value=21 Score=34.49 Aligned_cols=49 Identities=27% Similarity=0.330 Sum_probs=39.7
Q ss_pred cCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 802 VITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 802 L~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
..+..+++.+.|+..+.||||-..+ .|+++.+=+.-+..|+.-.+.+..
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~---~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQ---HPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCccccc---ChHHHHhhHHHHHHHHHHHHHHhc
Confidence 3456789999999999999999864 456777888889999887777654
No 79
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=57.78 E-value=79 Score=39.77 Aligned_cols=9 Identities=33% Similarity=0.494 Sum_probs=4.7
Q ss_pred CCCcHHHHH
Q 003030 773 KEGNLRALL 781 (855)
Q Consensus 773 Ke~NIRALL 781 (855)
...|||.-+
T Consensus 469 ~~~~lRSPI 477 (1064)
T KOG1144|consen 469 STENLRSPI 477 (1064)
T ss_pred cchhcCCce
Confidence 344666543
No 80
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.90 E-value=3.2e+02 Score=34.83 Aligned_cols=6 Identities=33% Similarity=0.639 Sum_probs=2.5
Q ss_pred hhHHHH
Q 003030 805 SAAVKK 810 (855)
Q Consensus 805 p~~VKK 810 (855)
+..|++
T Consensus 650 ~eavq~ 655 (1118)
T KOG1029|consen 650 TEAVQR 655 (1118)
T ss_pred HHHHhh
Confidence 344443
No 81
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=54.30 E-value=98 Score=39.00 Aligned_cols=7 Identities=29% Similarity=0.126 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 003030 629 VEARERA 635 (855)
Q Consensus 629 aEAr~rA 635 (855)
++|+.++
T Consensus 294 aea~l~~ 300 (1064)
T KOG1144|consen 294 AEAFLKQ 300 (1064)
T ss_pred HHHHHHH
Confidence 3343333
No 82
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=52.46 E-value=24 Score=38.49 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=47.1
Q ss_pred CcHHHHHhhccc---ccCCCCCCccCCccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHH
Q 003030 775 GNLRALLSTLQY---ILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLL 850 (855)
Q Consensus 775 ~NIRALLSTL~~---VLWp~~gWkpVgmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwev 850 (855)
|=||.-|-+||. ++- --+.-|++...++.+.|.-+|.+++-.||||-... .+ ....|..|-+||..
T Consensus 30 giirnrll~~~kske~~~--e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~a-------daa~f~qideafrk 98 (342)
T KOG0568|consen 30 GIIRNRLLHLHKSKEKIM--ECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EA-------DAARFIQIDEAFRK 98 (342)
T ss_pred hhHHHHHHHHhhhHHHHH--HHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-cc-------cHHHHHHHHHHHHH
Confidence 346665556653 110 12446789999999999999999999999998653 22 34678888888874
No 83
>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family. It is found on proteins which also contain IPR001683 from INTERPRO.
Probab=50.85 E-value=16 Score=34.15 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=45.6
Q ss_pred CCCcHHHHHhhcccccCCCCCCccCCccccCChhHHHH---HHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHH
Q 003030 773 KEGNLRALLSTLQYILGPDSGWHPIPLTEVITSAAVKK---AYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKV 846 (855)
Q Consensus 773 Ke~NIRALLSTL~~VLWp~~gWkpVgmsdL~tp~~VKK---AYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~Lne 846 (855)
.+.++=.+|..|+..|||+..|.+.+.. -|+.+-.. .=+..++..-||-+..-=..-.-+.-+..+|..|++
T Consensus 36 se~~v~~~i~~l~~~lwP~g~~~~~~~~--Rt~~ek~~tr~~A~~~L~~~~P~~l~~vvG~~~~~~g~~~if~~LQ~ 110 (113)
T PF08628_consen 36 SEEQVARYIQLLRESLWPNGKLAEPPPP--RTEEEKLRTRQEARELLLSLLPDTLKKVVGSENSRRGARRIFEMLQN 110 (113)
T ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHhcHHHHHHccCHHHHHHHHHHHHHHHCC
Confidence 4457888999999999999877766552 23322222 222334677788876521122346678888888864
No 84
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=50.35 E-value=3.3e+02 Score=28.69 Aligned_cols=6 Identities=17% Similarity=0.362 Sum_probs=3.2
Q ss_pred hhhhhh
Q 003030 656 FSEKFS 661 (855)
Q Consensus 656 ~~~~f~ 661 (855)
+..||.
T Consensus 182 ~~~FF~ 187 (216)
T PF11600_consen 182 ITSFFK 187 (216)
T ss_pred HHHHhC
Confidence 455664
No 85
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=47.29 E-value=4.6e+02 Score=32.89 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=23.2
Q ss_pred HHHHHHhHhhhHHHHhhhhcCCCCcHHHHHh
Q 003030 752 QAERNRLAETLDADVKRWSSGKEGNLRALLS 782 (855)
Q Consensus 752 q~Er~~l~d~ld~kI~~W~~GKe~NIRALLS 782 (855)
|-.++.+.+.|-..+-.|+.|..+-|-.|+-
T Consensus 646 qpve~~~d~alm~ql~pl~hgn~ns~~~ii~ 676 (811)
T KOG4364|consen 646 QPVEQICDRALMVQLFPLSHGNENSINDIID 676 (811)
T ss_pred cchHHHHHHHHHHHHhhhhcccccchHHHHH
Confidence 3466778888888889999888777655553
No 86
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=45.59 E-value=4.4e+02 Score=33.70 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=10.9
Q ss_pred HHHhhhhcCCCcccC
Q 003030 812 YRKATLCVHPDKLQQ 826 (855)
Q Consensus 812 YRKAiLkvHPDKl~~ 826 (855)
|-..-+.+||||-|.
T Consensus 1180 ~I~RQm~l~~~kpP~ 1194 (1259)
T KOG0163|consen 1180 WIARQMELHPDKPPI 1194 (1259)
T ss_pred HHHhhheecCCCCCe
Confidence 444556899999876
No 87
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=44.41 E-value=3.6e+02 Score=34.40 Aligned_cols=14 Identities=36% Similarity=0.235 Sum_probs=9.1
Q ss_pred HhhHHHHhHHHHHH
Q 003030 114 EANEREENMRKVKE 127 (855)
Q Consensus 114 e~~eQeEn~~~LKe 127 (855)
|-+++.=|++-||+
T Consensus 479 EKLQ~FFNerILke 492 (1259)
T KOG0163|consen 479 EKLQKFFNERILKE 492 (1259)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666667766665
No 88
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=43.58 E-value=1.7e+02 Score=30.02 Aligned_cols=26 Identities=8% Similarity=0.227 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003030 624 VERATVEARERAAEKAMAERGAFDAR 649 (855)
Q Consensus 624 vErA~aEAr~rA~e~a~~eraa~ear 649 (855)
..+..++||.++...|..++++.+++
T Consensus 78 A~~I~~e~~~~~~a~~~~~~~~~ea~ 103 (155)
T PRK06569 78 IDRLKKEKIDSLESEFLIKKKNLEQD 103 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555444
No 89
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=40.45 E-value=2.6e+02 Score=31.48 Aligned_cols=11 Identities=73% Similarity=0.803 Sum_probs=8.2
Q ss_pred HHHHHHHHHHH
Q 003030 613 MEARLRAERAA 623 (855)
Q Consensus 613 ~EAr~kAERaA 623 (855)
||||+.|.|+|
T Consensus 1 AEarlaakR~a 11 (302)
T PF09738_consen 1 AEARLAAKRAA 11 (302)
T ss_pred ChhhHHHHHHh
Confidence 47888888876
No 90
>PRK07735 NADH dehydrogenase subunit C; Validated
Probab=37.63 E-value=7.8e+02 Score=29.36 Aligned_cols=7 Identities=14% Similarity=0.482 Sum_probs=3.5
Q ss_pred CCCCCCc
Q 003030 789 GPDSGWH 795 (855)
Q Consensus 789 Wp~~gWk 795 (855)
||+..|-
T Consensus 381 ~P~AnW~ 387 (430)
T PRK07735 381 WKGANWP 387 (430)
T ss_pred hccCChH
Confidence 4555554
No 91
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=36.02 E-value=4.7e+02 Score=30.94 Aligned_cols=7 Identities=43% Similarity=0.520 Sum_probs=2.6
Q ss_pred HHHHHhh
Q 003030 637 EKAMAER 643 (855)
Q Consensus 637 e~a~~er 643 (855)
++++..+
T Consensus 374 ~~~~~~~ 380 (429)
T PRK00247 374 ARARARR 380 (429)
T ss_pred HHHHHHH
Confidence 3333333
No 92
>PLN03086 PRLI-interacting factor K; Provisional
Probab=35.28 E-value=1.5e+02 Score=36.04 Aligned_cols=11 Identities=55% Similarity=0.588 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 003030 559 ARERAFAEARE 569 (855)
Q Consensus 559 arera~aEare 569 (855)
|+++..+|.|+
T Consensus 8 ~~~~~~~~~~~ 18 (567)
T PLN03086 8 AREKLEREQRE 18 (567)
T ss_pred HHHHHHHHHHH
Confidence 33444333333
No 93
>PRK12472 hypothetical protein; Provisional
Probab=32.56 E-value=4.4e+02 Score=31.84 Aligned_cols=94 Identities=24% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003030 523 RQRELEIERLRRIEEEREREREREKDRMAVDIATLEARERAFAEARERAERAAVERATAEFRQRALAEARERLEKACAEA 602 (855)
Q Consensus 523 rere~eke~~r~~~E~~ere~ereker~Avera~rEarera~aEarerAer~A~eRA~~EArera~aeAreraekaa~ea 602 (855)
+..|+.|.+.-.......+.....+.-++..+|.- ++..+...+-+.+....-.+|.+++.+.+++.+++.+..+++
T Consensus 228 ~~~e~~~~~a~~~l~~adk~l~~a~~d~~~~~a~~-~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~a~~~a~~-- 304 (508)
T PRK12472 228 RKLERAKARADAELKRADKALAAAKTDEAKARAEE-RQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAAAA-- 304 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--
Q ss_pred HhhhHHhhhhHHHHHHHH
Q 003030 603 KEKSLAEKTSMEARLRAE 620 (855)
Q Consensus 603 ~~k~~~era~~EAr~kAE 620 (855)
.|..+.++.-+|+++.+
T Consensus 305 -~~~~~~~~a~~a~l~~~ 321 (508)
T PRK12472 305 -KKAETAKAATDAKLALE 321 (508)
T ss_pred -hhhHHHHHHHHHHhhcC
No 94
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.69 E-value=66 Score=32.60 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=36.4
Q ss_pred hhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 003030 805 SAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKVSLLLSCR 853 (855)
Q Consensus 805 p~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~~LneAwevLk~ 853 (855)
-...+..|+.+...+|||.....+ ......+-..|..+|.||.+|+.
T Consensus 17 ~~~l~~~~~~~~~~~~~dr~~~~~--~~~~~~~l~~~~~~~~a~~tLk~ 63 (174)
T COG1076 17 LDALKLQYRELQRAYHPDRFGKAS--EAEQRKALQQSAEVNPAYQTLKD 63 (174)
T ss_pred HhHhhhhHHHHHHhhCcccccccc--hHHHHHHHHHHHHhcchHHHHHH
Confidence 346788999999999999987543 33444566779999999999864
No 95
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=29.62 E-value=1.1e+03 Score=28.60 Aligned_cols=11 Identities=27% Similarity=0.266 Sum_probs=5.3
Q ss_pred hhhHHHHhhhh
Q 003030 760 ETLDADVKRWS 770 (855)
Q Consensus 760 d~ld~kI~~W~ 770 (855)
|.-..+|..|+
T Consensus 426 d~~tLev~kes 436 (489)
T PF05262_consen 426 DPETLEVKKES 436 (489)
T ss_pred Ccccceeeeec
Confidence 44444455554
No 96
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=24.84 E-value=9.1e+02 Score=26.18 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=7.8
Q ss_pred hHhhhHHHHhhhhcCCCCcHH
Q 003030 758 LAETLDADVKRWSSGKEGNLR 778 (855)
Q Consensus 758 l~d~ld~kI~~W~~GKe~NIR 778 (855)
-.|.|+..=..-...|+.-||
T Consensus 209 ~~D~~h~en~~~g~~ky~tl~ 229 (246)
T PF00769_consen 209 QLDIIHAENVRAGRDKYKTLR 229 (246)
T ss_dssp HHHHHHHHHHHTT--HHHHHH
T ss_pred hhHHHHHHHHHhchhHHHHHH
Confidence 345555443222233444444
No 97
>PLN03086 PRLI-interacting factor K; Provisional
Probab=23.92 E-value=4.1e+02 Score=32.55 Aligned_cols=6 Identities=50% Similarity=0.711 Sum_probs=2.5
Q ss_pred cHHHHH
Q 003030 776 NLRALL 781 (855)
Q Consensus 776 NIRALL 781 (855)
|++++|
T Consensus 201 npKavL 206 (567)
T PLN03086 201 NHKAVL 206 (567)
T ss_pred cHHHHH
Confidence 344444
No 98
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=23.64 E-value=1e+02 Score=30.59 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=26.5
Q ss_pred CccccCChhHHHHHHHHhhhhcCCCcccCCCCchhHHHHHHHHHH
Q 003030 798 PLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFD 842 (855)
Q Consensus 798 gmsdL~tp~~VKKAYRKAiLkvHPDKl~~~gat~Eqk~iAe~VF~ 842 (855)
++.+.+++..|.+.|.+++-.-+|+|.. | -||-.+||.
T Consensus 65 nv~~~~~~eeI~k~y~~Lf~~Nd~~kGG----S---fYLQSKV~r 102 (127)
T PF03656_consen 65 NVKEELSREEIQKRYKHLFKANDPSKGG----S---FYLQSKVFR 102 (127)
T ss_dssp T--G--SHHHHHHHHHHHHHHT-CCCTS--------HHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHhccCCCcCC----C---HHHHHHHHH
Confidence 3555778999999999999999999864 2 377777774
No 99
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=23.26 E-value=6.3e+02 Score=32.57 Aligned_cols=10 Identities=30% Similarity=0.438 Sum_probs=4.1
Q ss_pred hhhHhhhhcc
Q 003030 23 NLVKDYCKES 32 (855)
Q Consensus 23 ~~~~~~~~~~ 32 (855)
+|++++.+-|
T Consensus 280 KL~~VF~~sg 289 (988)
T KOG2072|consen 280 KLAKVFWKSG 289 (988)
T ss_pred HHHHHHHhcC
Confidence 3444444433
No 100
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=22.58 E-value=1.7e+03 Score=28.41 Aligned_cols=9 Identities=11% Similarity=0.220 Sum_probs=3.8
Q ss_pred hhhhhhhhh
Q 003030 653 DRIFSEKFS 661 (855)
Q Consensus 653 ~~~~~~~f~ 661 (855)
+..++-||.
T Consensus 372 ~aei~Kffq 380 (811)
T KOG4364|consen 372 EAEIGKFFQ 380 (811)
T ss_pred HHHHHhhhc
Confidence 334444444
No 101
>PF13340 DUF4096: Putative transposase of IS4/5 family (DUF4096)
Probab=21.57 E-value=77 Score=27.81 Aligned_cols=42 Identities=21% Similarity=0.500 Sum_probs=35.2
Q ss_pred CCcHHHHHhhcccccCCCCCCccCCccccCChhHHHHHHHHhh
Q 003030 774 EGNLRALLSTLQYILGPDSGWHPIPLTEVITSAAVKKAYRKAT 816 (855)
Q Consensus 774 e~NIRALLSTL~~VLWp~~gWkpVgmsdL~tp~~VKKAYRKAi 816 (855)
.-+.|.+|..+-+||..+|.|..|+ .+......|...|++-.
T Consensus 24 ~~~~R~v~~ail~~lrtG~~Wr~LP-~~fg~~~tv~~~f~rW~ 65 (75)
T PF13340_consen 24 RIDLREVLNAILYVLRTGCPWRDLP-EDFGPWSTVYRRFRRWS 65 (75)
T ss_pred ccchHHHHhcccccceecceecccc-hhccCcCcHHHHHHHHH
Confidence 3489999999999999999999988 56777788888887653
No 102
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=20.64 E-value=4.7e+02 Score=32.02 Aligned_cols=93 Identities=25% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003030 571 AERAAVERATAEFRQRALAEARERLEKACAEAKEKSLAEKTSM-EARLRAERAAVERATVEARERAAEKAMAERGAFDAR 649 (855)
Q Consensus 571 Aer~A~eRA~~EArera~aeAreraekaa~ea~~k~~~era~~-EAr~kAERaAvErA~aEAr~rA~e~a~~eraa~ear 649 (855)
+.|--..|-..++-++...||.++..+...+-|.+.-.+.... .++.|++..-.+--.++|++++ +++..-.++.+..
T Consensus 206 ~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekqeee~ke~e~~~-~k~~q~~~~~eek 284 (591)
T KOG2412|consen 206 KQRKEQIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQEEERKEAEEQA-EKEVQDPKAHEEK 284 (591)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCchhcccc
Q ss_pred hhHhhhhhhhhhhcc
Q 003030 650 ERVDRIFSEKFSASS 664 (855)
Q Consensus 650 ~~~~~~~~~~f~~~~ 664 (855)
..-.+.+..+|..++
T Consensus 285 ~a~qk~~~~~~~~~~ 299 (591)
T KOG2412|consen 285 LAEQKAVIEKVTTSS 299 (591)
T ss_pred ccccccccccccCCc
Done!