BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>003032
MNNNNNNNSSSTPNPNANTNNKDSEEDLAAQPVETVIKPDKSDTLSSAAAAEEEASAKSD
DPMDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARI
PSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGR
VTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSI
FEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAG
PSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLS
PPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAA
QSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQ
PVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGL
EKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVG
SAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFW
WSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCR
LLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAM
AVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQS
SATPAASQGQYPPLL

High Scoring Gene Products

Symbol, full name Information P value
SFR6
AT4G04920
protein from Arabidopsis thaliana 0.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  003032
        (855 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2135383 - symbol:SFR6 "AT4G04920" species:3702...  3471  0.        1


>TAIR|locus:2135383 [details] [associations]
            symbol:SFR6 "AT4G04920" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0009631 "cold acclimation"
            evidence=IMP] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0032922 "circadian regulation of gene expression"
            evidence=IMP] [GO:0048586 "regulation of long-day photoperiodism,
            flowering" evidence=IMP] [GO:0007155 "cell adhesion" evidence=RCA]
            [GO:0010090 "trichome morphogenesis" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0016926 "protein desumoylation" evidence=RCA]
            [GO:0045010 "actin nucleation" evidence=RCA] [GO:0048765 "root hair
            cell differentiation" evidence=RCA] [GO:0050665 "hydrogen peroxide
            biosynthetic process" evidence=RCA] [GO:0071555 "cell wall
            organization" evidence=RCA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IMP] [GO:0010104 "regulation
            of ethylene mediated signaling pathway" evidence=IMP] [GO:1901672
            "positive regulation of systemic acquired resistance" evidence=IMP]
            [GO:2000022 "regulation of jasmonic acid mediated signaling
            pathway" evidence=IMP] EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0006355 EMBL:AL161502 GO:GO:0006351 GO:GO:0006970
            GO:GO:0032922 GO:GO:0016592 IPI:IPI00526565 IPI:IPI00992086
            PIR:H85061 RefSeq:NP_001190676.1 RefSeq:NP_192401.5
            UniGene:At.21855 PRIDE:F4JGZ1 EnsemblPlants:AT4G04920.1
            GeneID:825831 KEGG:ath:AT4G04920 TAIR:At4g04920 eggNOG:NOG238605
            InParanoid:Q9M0Y7 OMA:SWQCEHE ArrayExpress:F4JGZ1 GO:GO:1901672
            GO:GO:0010104 GO:GO:2000022 GO:GO:0048586 Uniprot:F4JGZ1
        Length = 1278

 Score = 3471 (1226.9 bits), Expect = 0., P = 0.
 Identities = 652/777 (83%), Positives = 703/777 (90%)

Query:    59 SDDPMDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCA 118
             S   M+ D V+PATVFC++LKQP SNL HKMSVPELCRNFSAVAWCGKLNAIACASETCA
Sbjct:    73 SSSNMEIDPVSPATVFCVKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCA 132

Query:   119 RIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFY 178
             RIPSS ANTPFWIPIHI+IPERPTECAVFNV+AD PRDSVQFIEWSPTSCPRALLIANF+
Sbjct:   133 RIPSSKANTPFWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFH 192

Query:   179 GRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAK 238
             GR+TIWTQP+ G ANLV DA+ WQ EHEWRQDIAVVTKWL+G SPYRWLSSK +S  NAK
Sbjct:   193 GRITIWTQPTQGSANLVHDATSWQCEHEWRQDIAVVTKWLTGASPYRWLSSKPSSGTNAK 252

Query:   239 SIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLG 298
             S FEEKFLSQ+S++S RWPNFLCVCSVFSSGSVQ++WSQWP +Q   A KWF T KGLLG
Sbjct:   253 STFEEKFLSQSSESSARWPNFLCVCSVFSSGSVQIHWSQWPSNQGSTAPKWFSTKKGLLG 312

Query:   299 AGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPS 358
             AGPSGIMAAD IITDSGAMHVAGVPIVNPST+VVWEVTPGPGNG QA PK +T + VPPS
Sbjct:   313 AGPSGIMAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPS 372

Query:   359 LSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEA 418
             LS   W GFAPLAAYLFSWQEYL+SE KQG+K +DQ+ SDAI+L CSPVSNFSAYVSPEA
Sbjct:   373 LSSSSWTGFAPLAAYLFSWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEA 432

Query:   419 AAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS 478
             AAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS
Sbjct:   433 AAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS 492

Query:   479 VQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIP-TSNFKIHQLAAAGPTCDVWKTTD 537
             VQPVVLHQIFGNPTS+FGGQ P QTVWVS+VD SIP T +FK HQ+AAAGP+ D  K  D
Sbjct:   493 VQPVVLHQIFGNPTSNFGGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPD 552

Query:   538 SGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQI 597
             SG EK+  V FDPFDLPSDIR+LARIVYSAHGGEIAIA LRGGVHIFSGP F+PV+NYQI
Sbjct:   553 SGDEKANKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQI 612

Query:   598 SVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAE 657
             +VGSAIAAPAFS TSCCSASVWHD  KD  +LKIIRVLPPA+P +Q K + STWERAIAE
Sbjct:   613 NVGSAIAAPAFSPTSCCSASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAE 672

Query:   658 RFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRI 717
             RFWWSLLV VDWWDAVGCTQSAAEDGIVSLNSVIAV+DADFHSLPS QHRQQYGP+LDRI
Sbjct:   673 RFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRI 732

Query:   718 KCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDP 777
             KCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESAL+NPSALV +PW+  GET++GI+P
Sbjct:   733 KCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINP 792

Query:   778 EAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMV 834
             EAMAV+PALV+SIQAYVDAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN V
Sbjct:   793 EAMAVDPALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNV 849


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      855       809   0.00099  121 3  11 22  0.40    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  636 (68 KB)
  Total size of DFA:  465 KB (2215 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  69.77u 0.11s 69.88t   Elapsed:  00:00:04
  Total cpu time:  69.78u 0.11s 69.89t   Elapsed:  00:00:04
  Start:  Tue May 21 18:28:14 2013   End:  Tue May 21 18:28:18 2013

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