BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003032
         (855 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|F4JGZ1|MED16_ARATH Mediator of RNA polymerase II transcription subunit 16
           OS=Arabidopsis thaliana GN=MED16 PE=1 SV=1
          Length = 1278

 Score = 1352 bits (3498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/834 (80%), Positives = 729/834 (87%), Gaps = 7/834 (0%)

Query: 22  KDSEEDLAAQPVETVIKPD------KSDTLSSAAAAEEEASAKSDDPMDEDSVTPATVFC 75
           +  EE L  +  ET+   D      +   L  +   E+E    S   M+ D V+PATVFC
Sbjct: 30  EKEEEGLQQKQEETIESTDPILVVVEEKLLEKSVDGEKEDDNSSSSNMEIDPVSPATVFC 89

Query: 76  IRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHI 135
           ++LKQP SNL HKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSS ANTPFWIPIHI
Sbjct: 90  VKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANTPFWIPIHI 149

Query: 136 VIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLV 195
           +IPERPTECAVFNV+AD PRDSVQFIEWSPTSCPRALLIANF+GR+TIWTQP+ G ANLV
Sbjct: 150 LIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPTQGSANLV 209

Query: 196 RDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDR 255
            DA+ WQ EHEWRQDIAVVTKWL+G SPYRWLSSK +S  NAKS FEEKFLSQ+S++S R
Sbjct: 210 HDATSWQCEHEWRQDIAVVTKWLTGASPYRWLSSKPSSGTNAKSTFEEKFLSQSSESSAR 269

Query: 256 WPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSG 315
           WPNFLCVCSVFSSGSVQ++WSQWP +Q   A KWF T KGLLGAGPSGIMAAD IITDSG
Sbjct: 270 WPNFLCVCSVFSSGSVQIHWSQWPSNQGSTAPKWFSTKKGLLGAGPSGIMAADAIITDSG 329

Query: 316 AMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLF 375
           AMHVAGVPIVNPST+VVWEVTPGPGNG QA PK +T + VPPSLS   W GFAPLAAYLF
Sbjct: 330 AMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGFAPLAAYLF 389

Query: 376 SWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV 435
           SWQEYL+SE KQG+K +DQ+ SDAI+L CSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV
Sbjct: 390 SWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV 449

Query: 436 AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSF 495
           AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTS+F
Sbjct: 450 AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSNF 509

Query: 496 GGQAPMQTVWVSKVDTSI-PTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLP 554
           GGQ P QTVWVS+VD SI PT +FK HQ+AAAGP+ D  K  DSG EK+  V FDPFDLP
Sbjct: 510 GGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDEKANKVVFDPFDLP 569

Query: 555 SDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCC 614
           SDIR+LARIVYSAHGGEIAIA LRGGVHIFSGP F+PV+NYQI+VGSAIAAPAFS TSCC
Sbjct: 570 SDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGSAIAAPAFSPTSCC 629

Query: 615 SASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVG 674
           SASVWHD  KD  +LKIIRVLPPA+P +Q K + STWERAIAERFWWSLLV VDWWDAVG
Sbjct: 630 SASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAERFWWSLLVGVDWWDAVG 689

Query: 675 CTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMV 734
           CTQSAAEDGIVSLNSVIAV+DADFHSLPS QHRQQYGP+LDRIKCRLLEGTNAQEVRAMV
Sbjct: 690 CTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLEGTNAQEVRAMV 749

Query: 735 LDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYV 794
           LDMQARLLLDMLGKGIESAL+NPSALV +PW+  GET++GI+PEAMAV+PALV+SIQAYV
Sbjct: 750 LDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINPEAMAVDPALVSSIQAYV 809

Query: 795 DAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAASQ 848
           DAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN V SPTQ++++PA  Q
Sbjct: 810 DAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVTSPTQNASSPATPQ 863


>sp|Q54X75|MED16_DICDI Putative mediator of RNA polymerase II transcription subunit 16
           OS=Dictyostelium discoideum GN=med16 PE=3 SV=2
          Length = 1284

 Score = 40.0 bits (92), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 8/127 (6%)

Query: 647 NSSTWERAIAERFWWSLLVNVDWWDAVGCTQ--SAAEDGIVSLNSVIAVLDADFHSLPSI 704
           N     + +A+ F  S+L + DWWD +   +  S + D   + +  I  L +DF  LP +
Sbjct: 724 NQKVVSKWLAQLFQNSMLKSNDWWDILILLKIYSTSPDTRTTFHHTIIHLSSDFSCLP-L 782

Query: 705 QHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDP 764
             +Q Y    D IK  +    +  EV    +D QA+  +  L   ++S+    S L+  P
Sbjct: 783 TFQQTYRHCFDAIKASIYRIVSGMEVA--FVDSQAKSFIYYLCDTLKSSF---SPLLMQP 837

Query: 765 WQASGET 771
            Q S  T
Sbjct: 838 SQQSDGT 844


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.129    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 332,735,504
Number of Sequences: 539616
Number of extensions: 14381988
Number of successful extensions: 107944
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 59280
Number of HSP's gapped (non-prelim): 37383
length of query: 855
length of database: 191,569,459
effective HSP length: 126
effective length of query: 729
effective length of database: 123,577,843
effective search space: 90088247547
effective search space used: 90088247547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)