Query 003032
Match_columns 855
No_of_seqs 22 out of 24
Neff 1.7
Searched_HMMs 29240
Date Mon Mar 25 10:49:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gga_A P55CDC, cell division c 80.5 2.9 0.0001 39.5 6.4 80 89-188 97-178 (420)
2 4ggc_A P55CDC, cell division c 70.4 11 0.00038 32.7 6.9 79 90-188 18-98 (318)
3 1k8k_C P40, ARP2/3 complex 41 57.8 25 0.00085 31.2 6.8 73 97-185 98-170 (372)
4 4h5i_A Guanine nucleotide-exch 56.6 27 0.00094 32.9 7.3 72 99-189 273-344 (365)
5 4ggc_A P55CDC, cell division c 55.8 10 0.00035 32.9 4.0 66 563-634 246-313 (318)
6 2pm9_A Protein WEB1, protein t 55.6 15 0.00053 33.3 5.2 72 99-189 266-338 (416)
7 3k26_A Polycomb protein EED; W 54.5 28 0.00095 30.6 6.5 29 155-185 335-363 (366)
8 3jrp_A Fusion protein of prote 54.5 18 0.00063 31.9 5.4 34 153-186 53-86 (379)
9 3dwl_C Actin-related protein 2 54.1 20 0.00067 32.5 5.6 74 97-186 102-175 (377)
10 3f3f_A Nucleoporin SEH1; struc 51.0 33 0.0011 29.3 6.2 37 153-189 55-91 (351)
11 3odt_A Protein DOA1; ubiquitin 49.9 40 0.0014 29.0 6.7 47 133-186 207-253 (313)
12 3mmy_A MRNA export factor; mRN 49.2 37 0.0013 29.7 6.4 72 98-187 42-116 (368)
13 3fm0_A Protein CIAO1; WDR39,SG 49.0 43 0.0015 30.9 7.2 36 153-189 301-336 (345)
14 4aez_A CDC20, WD repeat-contai 48.3 48 0.0016 31.0 7.5 70 98-188 96-165 (401)
15 1pgu_A Actin interacting prote 47.9 36 0.0012 32.6 6.6 71 98-187 21-96 (615)
16 3dwl_C Actin-related protein 2 47.4 9.4 0.00032 34.5 2.5 71 98-188 14-86 (377)
17 3odt_A Protein DOA1; ubiquitin 47.2 44 0.0015 28.7 6.5 49 133-188 248-296 (313)
18 1gxr_A ESG1, transducin-like e 46.5 51 0.0018 28.5 6.9 71 98-188 144-214 (337)
19 1k8k_C P40, ARP2/3 complex 41 45.9 32 0.0011 30.5 5.6 68 99-186 12-81 (372)
20 3f3f_A Nucleoporin SEH1; struc 45.1 60 0.002 27.7 6.9 35 153-187 108-142 (351)
21 1sq9_A Antiviral protein SKI8; 44.6 37 0.0013 30.6 5.9 32 155-186 354-393 (397)
22 2aq5_A Coronin-1A; WD40 repeat 44.5 56 0.0019 30.3 7.2 33 154-187 130-162 (402)
23 1gxr_A ESG1, transducin-like e 43.5 44 0.0015 29.0 6.0 72 99-187 55-127 (337)
24 4a11_B DNA excision repair pro 40.9 54 0.0018 29.3 6.3 35 153-189 332-366 (408)
25 1r5m_A SIR4-interacting protei 39.8 55 0.0019 29.3 6.1 68 98-186 250-317 (425)
26 4a11_B DNA excision repair pro 39.6 65 0.0022 28.8 6.6 34 153-187 97-130 (408)
27 3vl1_A 26S proteasome regulato 39.1 58 0.002 29.8 6.3 70 98-187 142-211 (420)
28 3zwl_B Eukaryotic translation 35.8 76 0.0026 27.8 6.3 31 154-186 314-344 (369)
29 4g56_B MGC81050 protein; prote 35.6 34 0.0012 32.1 4.3 38 154-192 310-347 (357)
30 3kkj_A Amine oxidase, flavin-c 35.5 5 0.00017 32.2 -1.1 32 296-340 7-38 (336)
31 3k26_A Polycomb protein EED; W 35.5 61 0.0021 28.4 5.7 54 133-186 46-102 (366)
32 4gqb_B Methylosome protein 50; 35.5 69 0.0023 30.3 6.4 51 133-185 105-155 (344)
33 2pm7_B Protein transport prote 34.2 99 0.0034 27.8 7.0 35 154-190 253-287 (297)
34 2pm7_B Protein transport prote 34.1 84 0.0029 28.2 6.5 35 153-187 202-237 (297)
35 1yfq_A Cell cycle arrest prote 32.9 92 0.0032 27.3 6.4 71 97-187 58-130 (342)
36 3jrp_A Fusion protein of prote 32.5 98 0.0033 27.3 6.5 35 153-187 204-239 (379)
37 2g31_A Reticulon-4; NOGO, heli 32.3 19 0.00065 29.3 1.8 23 789-811 33-55 (60)
38 4e54_B DNA damage-binding prot 32.0 36 0.0012 32.4 3.9 31 155-186 119-149 (435)
39 3ow8_A WD repeat-containing pr 31.9 96 0.0033 28.6 6.6 68 99-186 210-277 (321)
40 3zwl_B Eukaryotic translation 31.4 65 0.0022 28.2 5.1 57 129-187 5-62 (369)
41 3dw8_B Serine/threonine-protei 31.0 80 0.0027 29.0 5.9 33 156-188 94-126 (447)
42 4aow_A Guanine nucleotide-bind 30.6 44 0.0015 29.2 3.9 32 153-185 36-67 (340)
43 2pbi_B Guanine nucleotide-bind 30.5 89 0.003 29.1 6.2 51 133-187 178-228 (354)
44 1r5m_A SIR4-interacting protei 30.1 1.4E+02 0.0048 26.7 7.2 34 154-189 246-279 (425)
45 4ery_A WD repeat-containing pr 29.9 1.1E+02 0.0037 27.1 6.4 69 98-186 68-136 (312)
46 3mb2_A 4-oxalocrotonate tautom 29.8 52 0.0018 25.6 3.9 59 717-776 4-62 (72)
47 2ynn_A Coatomer subunit beta'; 29.7 1.2E+02 0.004 27.4 6.7 66 100-185 60-125 (304)
48 3ei3_B DNA damage-binding prot 28.5 82 0.0028 28.7 5.5 73 98-187 76-149 (383)
49 3mmy_A MRNA export factor; mRN 28.4 61 0.0021 28.4 4.4 37 152-188 36-73 (368)
50 1yfq_A Cell cycle arrest prote 27.8 69 0.0024 28.1 4.7 37 151-189 7-43 (342)
51 4aow_A Guanine nucleotide-bind 27.7 51 0.0017 28.8 3.8 30 154-185 305-334 (340)
52 3dw8_B Serine/threonine-protei 26.1 49 0.0017 30.4 3.6 34 154-189 27-60 (447)
53 3ry0_A Putative tautomerase; o 25.4 52 0.0018 25.0 3.1 57 717-774 3-59 (65)
54 2pbi_B Guanine nucleotide-bind 24.9 1.2E+02 0.0042 28.2 6.1 31 153-185 324-354 (354)
55 2x4k_A 4-oxalocrotonate tautom 24.6 71 0.0024 23.0 3.6 56 717-773 6-61 (63)
56 1sq9_A Antiviral protein SKI8; 24.3 60 0.0021 29.3 3.7 33 153-189 14-46 (397)
57 2j04_B YDR362CP, TAU91; beta p 24.3 1E+02 0.0036 31.7 6.0 34 154-187 206-243 (524)
58 3fm0_A Protein CIAO1; WDR39,SG 24.2 1.1E+02 0.0039 28.1 5.7 37 147-185 8-44 (345)
59 3bws_A Protein LP49; two-domai 23.9 1.4E+02 0.0048 27.5 6.2 47 132-185 382-429 (433)
60 3bg1_A Protein SEC13 homolog; 23.7 78 0.0027 28.8 4.4 33 155-189 262-294 (316)
61 2xzm_R RACK1; ribosome, transl 23.4 1.6E+02 0.0054 26.9 6.4 30 155-186 309-338 (343)
62 4g56_B MGC81050 protein; prote 23.4 84 0.0029 29.4 4.7 73 98-187 97-169 (357)
63 3i2n_A WD repeat-containing pr 23.3 1.7E+02 0.0057 25.7 6.3 32 155-186 209-241 (357)
64 2ko2_A Reticulon-4; NOGO, memb 22.5 30 0.001 29.9 1.3 24 789-812 46-69 (79)
65 1erj_A Transcriptional repress 22.4 1.8E+02 0.006 27.4 6.7 32 154-187 255-286 (393)
66 2ynn_A Coatomer subunit beta'; 22.1 72 0.0025 28.8 3.8 33 154-188 12-44 (304)
67 2opa_A Probable tautomerase YW 21.9 96 0.0033 22.6 3.9 57 717-774 3-59 (61)
68 3ei3_B DNA damage-binding prot 21.3 86 0.0029 28.5 4.2 35 154-189 72-106 (383)
69 3ej9_A Alpha-subunit of trans- 21.2 1E+02 0.0034 24.6 4.1 62 717-779 4-65 (76)
70 2aq5_A Coronin-1A; WD40 repeat 21.2 1.6E+02 0.0055 27.3 6.0 71 98-186 134-205 (402)
71 3iz6_a 40S ribosomal protein R 21.2 1.3E+02 0.0044 28.1 5.5 34 152-187 341-374 (380)
72 3s8s_A Histone-lysine N-methyl 21.2 22 0.00076 29.7 0.3 61 496-557 1-61 (110)
73 1pgu_A Actin interacting prote 21.0 1.2E+02 0.004 29.1 5.2 30 153-185 582-611 (615)
74 3iz6_a 40S ribosomal protein R 20.9 78 0.0027 29.6 3.9 32 153-186 64-95 (380)
75 2hes_X YDR267CP; beta-propelle 20.2 1.6E+02 0.0054 27.0 5.7 96 71-184 129-226 (330)
No 1
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=80.47 E-value=2.9 Score=39.53 Aligned_cols=80 Identities=15% Similarity=0.362 Sum_probs=56.1
Q ss_pred cChhHhhhcc--chhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCC
Q 003032 89 MSVPELCRNF--SAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPT 166 (855)
Q Consensus 89 msvpElcRnF--savawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~ 166 (855)
+..|+|...| +-|+|. +.|.||.+...+.+ |...+--.-...+. .....+.|.++.|||.
T Consensus 97 l~ap~~~~d~y~~~l~wS-~~n~lAvgld~tV~---------------lWd~~tg~~~~~~~--~~~~~~~V~sv~fspd 158 (420)
T 4gga_A 97 LDAPEIRNDYYLNLVDWS-SGNVLAVALDNSVY---------------LWSASSGDILQLLQ--MEQPGEYISSVAWIKE 158 (420)
T ss_dssp EECTTCCCCTTCBCEEEC-TTSEEEEEETTEEE---------------EEETTTCCEEEEEE--CCSTTCCEEEEEECTT
T ss_pred EECCCCcccccceeEEEC-CCCEEEEEeCCEEE---------------EEECCCCCEEEEEE--ecCCCCcEEEEEECCC
Confidence 4568888777 568996 56999998766543 44433222222333 3456789999999996
Q ss_pred CcchheeeeeccccEEEeecCC
Q 003032 167 SCPRALLIANFYGRVTIWTQPS 188 (855)
Q Consensus 167 ~cpRALLiAnf~GRvtIWtQPs 188 (855)
+ +-|+++..+|.|.||.-.+
T Consensus 159 g--~~lasgs~Dg~v~iWd~~~ 178 (420)
T 4gga_A 159 G--NYLAVGTSSAEVQLWDVQQ 178 (420)
T ss_dssp S--SEEEEEETTSCEEEEETTT
T ss_pred C--CEEEEEECCCeEEEEEcCC
Confidence 5 5788999999999997543
No 2
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=70.37 E-value=11 Score=32.65 Aligned_cols=79 Identities=15% Similarity=0.366 Sum_probs=54.3
Q ss_pred ChhHhhhcc--chhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCC
Q 003032 90 SVPELCRNF--SAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTS 167 (855)
Q Consensus 90 svpElcRnF--savawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~ 167 (855)
..|||--.| +.|+|- +.|.||++.... |.|...+--+....|. .....+.|..+.|+|..
T Consensus 18 dap~~~~d~y~~~l~WS-~~~~lAvg~D~t---------------V~iWd~~tg~~~~~~~--~~~~~~~V~~v~~~~~~ 79 (318)
T 4ggc_A 18 DAPEIRNDYYLNLVDWS-SGNVLAVALDNS---------------VYLWSASSGDILQLLQ--MEQPGEYISSVAWIKEG 79 (318)
T ss_dssp ECTTCCCCTTCBCEEEC-TTSEEEEEETTE---------------EEEEETTTCCEEEEEE--CCSTTCCEEEEEECTTS
T ss_pred eCCCCcccccceEEEEC-CCCEEEEEeCCE---------------EEEEECCCCCEEEEEE--ecCCCCeEEEEEECCCC
Confidence 456765455 778995 568999875433 3444544333333333 34677889999999975
Q ss_pred cchheeeeeccccEEEeecCC
Q 003032 168 CPRALLIANFYGRVTIWTQPS 188 (855)
Q Consensus 168 cpRALLiAnf~GRvtIWtQPs 188 (855)
+-|+.+-.+|.|.||.-.+
T Consensus 80 --~~l~sgs~Dg~v~iw~~~~ 98 (318)
T 4ggc_A 80 --NYLAVGTSSAEVQLWDVQQ 98 (318)
T ss_dssp --SEEEEEETTSEEEEEETTT
T ss_pred --CEEEEEECCCcEEEeecCC
Confidence 6788999999999997544
No 3
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=57.81 E-value=25 Score=31.24 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=47.4
Q ss_pred ccchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeee
Q 003032 97 NFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIAN 176 (855)
Q Consensus 97 nFsavawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAn 176 (855)
...+++|....+.|+++++... |+|...+......+.......-.+.|..|.|+|.. +-|+.+.
T Consensus 98 ~v~~~~~~~~~~~l~~~~~d~~--------------v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~ 161 (372)
T 1k8k_C 98 AARCVRWAPNEKKFAVGSGSRV--------------ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS--VLLAAGS 161 (372)
T ss_dssp CEEEEEECTTSSEEEEEETTSS--------------EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS--SEEEEEE
T ss_pred ceeEEEECCCCCEEEEEeCCCE--------------EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC--CEEEEEc
Confidence 3456677766677777754211 34444444333333334444446789999999965 5688888
Q ss_pred ccccEEEee
Q 003032 177 FYGRVTIWT 185 (855)
Q Consensus 177 f~GRvtIWt 185 (855)
.+|.|.||.
T Consensus 162 ~dg~i~~~d 170 (372)
T 1k8k_C 162 CDFKCRIFS 170 (372)
T ss_dssp TTSCEEEEE
T ss_pred CCCCEEEEE
Confidence 999999998
No 4
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=56.56 E-value=27 Score=32.92 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=47.5
Q ss_pred chhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeeecc
Q 003032 99 SAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFY 178 (855)
Q Consensus 99 savawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAnf~ 178 (855)
.++++...-+.||++++.+. |.|..-+--..+ ..+...-.+.|..+.|||.+ +-|+.+-.+
T Consensus 273 ~~~~~Spdg~~lasgs~D~~--------------V~iwd~~~~~~~---~~~~~gH~~~V~~v~fSpdg--~~laS~S~D 333 (365)
T 4h5i_A 273 TSMDVDMKGELAVLASNDNS--------------IALVKLKDLSMS---KIFKQAHSFAITEVTISPDS--TYVASVSAA 333 (365)
T ss_dssp EEEEECTTSCEEEEEETTSC--------------EEEEETTTTEEE---EEETTSSSSCEEEEEECTTS--CEEEEEETT
T ss_pred EeEEECCCCCceEEEcCCCE--------------EEEEECCCCcEE---EEecCcccCCEEEEEECCCC--CEEEEEeCC
Confidence 45666666677887765421 344444332222 12233456789999999986 678889999
Q ss_pred ccEEEeecCCC
Q 003032 179 GRVTIWTQPSH 189 (855)
Q Consensus 179 GRvtIWtQPsq 189 (855)
|.|.||.=|..
T Consensus 334 ~tvrvw~ip~~ 344 (365)
T 4h5i_A 334 NTIHIIKLPLN 344 (365)
T ss_dssp SEEEEEECCTT
T ss_pred CeEEEEEcCCC
Confidence 99999987644
No 5
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=55.77 E-value=10 Score=32.87 Aligned_cols=66 Identities=23% Similarity=0.273 Sum_probs=41.0
Q ss_pred hhhcccCCeEEEEE--ecCceeEeeCCCCCcccceeeecccccccCccCccccccceeeecCCCCceEEEEEee
Q 003032 563 IVYSAHGGEIAIAL--LRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRV 634 (855)
Q Consensus 563 iVySAhGGEiavAf--l~GgVHIFSG~nftpVdnyqInVgs~Ia~PAFSsTSCCsASVWHDt~kd~tiLkIirV 634 (855)
+.|+..+++++++- -.|.|+||.-.+..++..++-- ...|-.-+||+..-..||.= .| -.+||-++
T Consensus 246 ~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg~~l~S~s----~D-~~v~iWd~ 313 (318)
T 4ggc_A 246 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAA----AD-ETLRLWRC 313 (318)
T ss_dssp EEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEE----TT-TEEEEECC
T ss_pred eeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEe----cC-CeEEEEEC
Confidence 45667777777664 4578999988888887665421 23455557777655555532 22 34666665
No 6
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=55.59 E-value=15 Score=33.26 Aligned_cols=72 Identities=14% Similarity=0.303 Sum_probs=47.7
Q ss_pred chhhhhc-cccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeeec
Q 003032 99 SAVAWCG-KLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF 177 (855)
Q Consensus 99 savawc~-klN~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAnf 177 (855)
.+++|+. .-+.|+++++.. =|+|...+..+.+..|. ...+.|..+.|+|.. ++-|+.+..
T Consensus 266 ~~~~~s~~~~~~l~s~~~dg--------------~v~~wd~~~~~~~~~~~----~~~~~v~~~~~s~~~-~~~l~s~~~ 326 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGRDN--------------TVLLWNPESAEQLSQFP----ARGNWCFKTKFAPEA-PDLFACASF 326 (416)
T ss_dssp EEEEECSSCSSCEEEEESSS--------------EEEEECSSSCCEEEEEE----CSSSCCCCEEECTTC-TTEEEECCS
T ss_pred eEEEeCCCCCCeEEEEeCCC--------------CEEEeeCCCCccceeec----CCCCceEEEEECCCC-CCEEEEEec
Confidence 4566665 556666665421 15555555555555444 345679999999965 567888999
Q ss_pred cccEEEeecCCC
Q 003032 178 YGRVTIWTQPSH 189 (855)
Q Consensus 178 ~GRvtIWtQPsq 189 (855)
+|+|.||.=.+.
T Consensus 327 d~~i~iw~~~~~ 338 (416)
T 2pm9_A 327 DNKIEVQTLQNL 338 (416)
T ss_dssp SSEEEEEESCCC
T ss_pred CCcEEEEEccCC
Confidence 999999985544
No 7
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=54.55 E-value=28 Score=30.61 Aligned_cols=29 Identities=10% Similarity=0.168 Sum_probs=25.4
Q ss_pred CCceEEEEecCCCcchheeeeeccccEEEee
Q 003032 155 RDSVQFIEWSPTSCPRALLIANFYGRVTIWT 185 (855)
Q Consensus 155 ~dsvq~ieWSp~~cpRALLiAnf~GRvtIWt 185 (855)
...|..+.|+|. .+-|+.+..+|+|.||.
T Consensus 335 ~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 335 GAAIRQTSFSRD--SSILIAVCDDASIWRWD 363 (366)
T ss_dssp CSCEEEEEECTT--SSEEEEEETTSEEEEEE
T ss_pred CCceEEEEeCCC--CCeEEEEeCCCEEEEEE
Confidence 678999999995 46788999999999995
No 8
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=54.54 E-value=18 Score=31.93 Aligned_cols=34 Identities=21% Similarity=0.474 Sum_probs=29.8
Q ss_pred CCCCceEEEEecCCCcchheeeeeccccEEEeec
Q 003032 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQ 186 (855)
Q Consensus 153 sp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQ 186 (855)
...+.|..+.|+|....+-|+.+..+|.|.||.-
T Consensus 53 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 86 (379)
T 3jrp_A 53 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 86 (379)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence 3567899999999877889999999999999964
No 9
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=54.09 E-value=20 Score=32.46 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=45.4
Q ss_pred ccchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeee
Q 003032 97 NFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIAN 176 (855)
Q Consensus 97 nFsavawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAn 176 (855)
...+++|....+.|+++++... |.|...+..++..........-.+.|..|.|+|.. +-|+.+.
T Consensus 102 ~v~~~~~~~~~~~l~~~~~d~~--------------i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~~ 165 (377)
T 3dwl_C 102 AATFVRWSPNEDKFAVGSGARV--------------ISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN--VLLAAGC 165 (377)
T ss_dssp CEEEEECCTTSSCCEEEESSSC--------------EEECCC-----CCCCEEECSSCCSCEEEEEECTTS--SEEEEEE
T ss_pred ceEEEEECCCCCEEEEEecCCe--------------EEEEEECCcccceeeeEeecccCCCeEEEEEcCCC--CEEEEEe
Confidence 3456777777777777655321 34444333332222233333356789999999964 6788889
Q ss_pred ccccEEEeec
Q 003032 177 FYGRVTIWTQ 186 (855)
Q Consensus 177 f~GRvtIWtQ 186 (855)
.+|.|.||.-
T Consensus 166 ~d~~i~iwd~ 175 (377)
T 3dwl_C 166 ADRKAYVLSA 175 (377)
T ss_dssp SSSCEEEEEE
T ss_pred CCCEEEEEEE
Confidence 9999999974
No 10
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=50.95 E-value=33 Score=29.34 Aligned_cols=37 Identities=19% Similarity=0.469 Sum_probs=30.7
Q ss_pred CCCCceEEEEecCCCcchheeeeeccccEEEeecCCC
Q 003032 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSH 189 (855)
Q Consensus 153 sp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQPsq 189 (855)
...+.|..|.|+|....+-|+.+..+|.|.||.-.+.
T Consensus 55 ~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~ 91 (351)
T 3f3f_A 55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPD 91 (351)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTT
T ss_pred cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCC
Confidence 4567899999999766788999999999999975443
No 11
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=49.86 E-value=40 Score=28.98 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=34.5
Q ss_pred EEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeeeccccEEEeec
Q 003032 133 IHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQ 186 (855)
Q Consensus 133 IhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQ 186 (855)
|+|...+..+....|. ...+.|..+.|+|.. + |+.+..+|+|.||.-
T Consensus 207 i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~--~-l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 207 IKLVDMHTGDVLRTYE----GHESFVYCIKLLPNG--D-IVSCGEDRTVRIWSK 253 (313)
T ss_dssp EEEEETTTCCEEEEEE----CCSSCEEEEEECTTS--C-EEEEETTSEEEEECT
T ss_pred EEEEECCchhhhhhhh----cCCceEEEEEEecCC--C-EEEEecCCEEEEEEC
Confidence 5555555555444443 345679999999988 3 899999999999963
No 12
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=49.19 E-value=37 Score=29.71 Aligned_cols=72 Identities=10% Similarity=0.094 Sum_probs=44.8
Q ss_pred cchhhhhccc---cceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheee
Q 003032 98 FSAVAWCGKL---NAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLI 174 (855)
Q Consensus 98 Fsavawc~kl---N~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLi 174 (855)
..+++|+... +.|+++++... |.|..-+...+.....+ ....+.|..+.|+| ..+-|+.
T Consensus 42 v~~~~~~~~~~~g~~l~~~~~dg~--------------i~iw~~~~~~~~~~~~~--~~h~~~v~~~~~~~--~~~~l~s 103 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGSWAND--------------VRCWEVQDSGQTIPKAQ--QMHTGPVLDVCWSD--DGSKVFT 103 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEETTSE--------------EEEEEECTTSCEEEEEE--EECSSCEEEEEECT--TSSEEEE
T ss_pred eEEEEEcCCCCCceEEEEECCCCc--------------EEEEEcCCCCceeEEEe--ccccCCEEEEEECc--CCCEEEE
Confidence 3456666663 67777654311 44444443222221212 22457899999999 5577889
Q ss_pred eeccccEEEeecC
Q 003032 175 ANFYGRVTIWTQP 187 (855)
Q Consensus 175 Anf~GRvtIWtQP 187 (855)
+..+|.|.||.-.
T Consensus 104 ~~~dg~v~iwd~~ 116 (368)
T 3mmy_A 104 ASCDKTAKMWDLS 116 (368)
T ss_dssp EETTSEEEEEETT
T ss_pred EcCCCcEEEEEcC
Confidence 9999999999754
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=49.02 E-value=43 Score=30.89 Aligned_cols=36 Identities=22% Similarity=0.497 Sum_probs=27.9
Q ss_pred CCCCceEEEEecCCCcchheeeeeccccEEEeecCCC
Q 003032 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSH 189 (855)
Q Consensus 153 sp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQPsq 189 (855)
.-.+.|..+.|+|.. ++-|..+-.+|+|.||.-.+.
T Consensus 301 ~h~~~V~~v~~~p~~-~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 301 AHSQDVNCVAWNPKE-PGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp SSSSCEEEEEECSSS-TTEEEEEETTSCEEEEEECC-
T ss_pred cccCcEeEeEEeCCC-ceEEEEcCCCCcEEEEEecCC
Confidence 346789999999964 445778889999999986554
No 14
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.30 E-value=48 Score=30.97 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=45.8
Q ss_pred cchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeeec
Q 003032 98 FSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF 177 (855)
Q Consensus 98 Fsavawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAnf 177 (855)
..+++|.+ .+.++++.+.+ |+|...+.......+.. ...+.|..+.|+|. .+-|+++..
T Consensus 96 ~~~~~~s~-~~l~~~~~d~~---------------v~lw~~~~~~~~~~~~~---~~~~~v~~v~~s~~--~~~l~~~~~ 154 (401)
T 4aez_A 96 LNLLDWSN-LNVVAVALERN---------------VYVWNADSGSVSALAET---DESTYVASVKWSHD--GSFLSVGLG 154 (401)
T ss_dssp CBCEEECT-TSEEEEEETTE---------------EEEEETTTCCEEEEEEC---CTTCCEEEEEECTT--SSEEEEEET
T ss_pred EEEEeecC-CCEEEEECCCe---------------EEEeeCCCCcEeEeeec---CCCCCEEEEEECCC--CCEEEEECC
Confidence 34577776 46777765433 44554444333333332 25677999999995 467888999
Q ss_pred cccEEEeecCC
Q 003032 178 YGRVTIWTQPS 188 (855)
Q Consensus 178 ~GRvtIWtQPs 188 (855)
+|.|.||.-.+
T Consensus 155 dg~i~iwd~~~ 165 (401)
T 4aez_A 155 NGLVDIYDVES 165 (401)
T ss_dssp TSCEEEEETTT
T ss_pred CCeEEEEECcC
Confidence 99999997544
No 15
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=47.88 E-value=36 Score=32.56 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=49.6
Q ss_pred cchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCC----cceeEEEeecCCCCCc-eEEEEecCCCcchhe
Q 003032 98 FSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERP----TECAVFNVIADCPRDS-VQFIEWSPTSCPRAL 172 (855)
Q Consensus 98 Fsavawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerP----tE~avfnV~adsp~ds-vq~ieWSp~~cpRAL 172 (855)
-.+++|....+.|+++.+.. |.|...+.+ .....| ....+. |..+.|+|....+-|
T Consensus 21 v~~~~~spdg~~l~~~~~~~---------------v~v~~~~~~~~~~~~~~~~----~~h~~~~v~~~~~sp~~~~~~l 81 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPCGKS---------------AFVRCLDDGDSKVPPVVQF----TGHGSSVVTTVKFSPIKGSQYL 81 (615)
T ss_dssp CCCCEEETTTTEEEEEETTE---------------EEEEECCSSCCSSCSEEEE----CTTTTSCEEEEEECSSTTCCEE
T ss_pred eeEEEECCCCCEEEEecCCe---------------EEEEECCCCCCccccceEE----ecCCCceEEEEEECcCCCCCEE
Confidence 45778888888888875321 455555544 444444 344677 999999994335678
Q ss_pred eeeeccccEEEeecC
Q 003032 173 LIANFYGRVTIWTQP 187 (855)
Q Consensus 173 LiAnf~GRvtIWtQP 187 (855)
+.+..+|.|.||.-.
T Consensus 82 ~s~~~dg~v~vw~~~ 96 (615)
T 1pgu_A 82 CSGDESGKVIVWGWT 96 (615)
T ss_dssp EEEETTSEEEEEEEE
T ss_pred EEecCCCEEEEEeCC
Confidence 889999999999764
No 16
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=47.38 E-value=9.4 Score=34.54 Aligned_cols=71 Identities=10% Similarity=0.213 Sum_probs=42.3
Q ss_pred cchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCC--cceeEEEeecCCCCCceEEEEecCCCcchheeee
Q 003032 98 FSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERP--TECAVFNVIADCPRDSVQFIEWSPTSCPRALLIA 175 (855)
Q Consensus 98 Fsavawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerP--tE~avfnV~adsp~dsvq~ieWSp~~cpRALLiA 175 (855)
-.+++|....+.|+++++... |+|...+-. .....| ....+.|..+.|+|.+ +-|+.+
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~--------------i~iw~~~~~~~~~~~~~----~~h~~~v~~~~~s~~~--~~l~s~ 73 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQ--------------VELYEQDGNGWKHARTF----SDHDKIVTCVDWAPKS--NRIVTC 73 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSC--------------BCEEEEETTEEEECCCB----CCCSSCEEEEEECTTT--CCEEEE
T ss_pred EEEEEECCCCCEEEEecCCCE--------------EEEEEccCCceEEEEEE----ecCCceEEEEEEeCCC--CEEEEE
Confidence 456777777777877744211 222222211 222222 2356789999999985 678888
Q ss_pred eccccEEEeecCC
Q 003032 176 NFYGRVTIWTQPS 188 (855)
Q Consensus 176 nf~GRvtIWtQPs 188 (855)
..+|.|.||.=.+
T Consensus 74 s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 74 SQDRNAYVYEKRP 86 (377)
T ss_dssp ETTSSEEEC----
T ss_pred eCCCeEEEEEcCC
Confidence 9999999997544
No 17
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=47.19 E-value=44 Score=28.71 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=35.0
Q ss_pred EEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeeeccccEEEeecCC
Q 003032 133 IHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPS 188 (855)
Q Consensus 133 IhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQPs 188 (855)
|+|...+..+....|. .+.+.|..+.|+|.+- |+.+..+|.|.||.-.+
T Consensus 248 v~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~~~---~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 248 VRIWSKENGSLKQVIT----LPAISIWSVDCMSNGD---IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp EEEECTTTCCEEEEEE----CSSSCEEEEEECTTSC---EEEEETTSCEEEEESCG
T ss_pred EEEEECCCCceeEEEe----ccCceEEEEEEccCCC---EEEEeCCCcEEEEeCCC
Confidence 4455555554444443 3456799999999874 88999999999998543
No 18
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=46.52 E-value=51 Score=28.53 Aligned_cols=71 Identities=15% Similarity=0.103 Sum_probs=46.7
Q ss_pred cchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeeec
Q 003032 98 FSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF 177 (855)
Q Consensus 98 Fsavawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAnf 177 (855)
..+++|....+.++++++.. =|++...+..+....|. ...+.|..+.|+|.. +-|+.+..
T Consensus 144 i~~~~~~~~~~~l~~~~~dg--------------~v~~~d~~~~~~~~~~~----~~~~~i~~~~~~~~~--~~l~~~~~ 203 (337)
T 1gxr_A 144 CYALAISPDSKVCFSCCSDG--------------NIAVWDLHNQTLVRQFQ----GHTDGASCIDISNDG--TKLWTGGL 203 (337)
T ss_dssp EEEEEECTTSSEEEEEETTS--------------CEEEEETTTTEEEEEEC----CCSSCEEEEEECTTS--SEEEEEET
T ss_pred eEEEEECCCCCEEEEEeCCC--------------cEEEEeCCCCceeeeee----cccCceEEEEECCCC--CEEEEEec
Confidence 34566666666666665421 15555555444444332 356789999999965 67888999
Q ss_pred cccEEEeecCC
Q 003032 178 YGRVTIWTQPS 188 (855)
Q Consensus 178 ~GRvtIWtQPs 188 (855)
+|.|.||.-.+
T Consensus 204 dg~i~~~d~~~ 214 (337)
T 1gxr_A 204 DNTVRSWDLRE 214 (337)
T ss_dssp TSEEEEEETTT
T ss_pred CCcEEEEECCC
Confidence 99999997543
No 19
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=45.85 E-value=32 Score=30.55 Aligned_cols=68 Identities=18% Similarity=0.329 Sum_probs=45.0
Q ss_pred chhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCc--ceeEEEeecCCCCCceEEEEecCCCcchheeeee
Q 003032 99 SAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPT--ECAVFNVIADCPRDSVQFIEWSPTSCPRALLIAN 176 (855)
Q Consensus 99 savawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerPt--E~avfnV~adsp~dsvq~ieWSp~~cpRALLiAn 176 (855)
.+++|....+.|+++.+.. =|.|...+..+ ....|. ...+.|..|.|+|. .+-|+.+.
T Consensus 12 ~~~~~s~~~~~l~~~~~d~--------------~v~i~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~--~~~l~~~~ 71 (372)
T 1k8k_C 12 SCHAWNKDRTQIAICPNNH--------------EVHIYEKSGNKWVQVHELK----EHNGQVTGVDWAPD--SNRIVTCG 71 (372)
T ss_dssp CEEEECTTSSEEEEECSSS--------------EEEEEEEETTEEEEEEEEE----CCSSCEEEEEEETT--TTEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCC--------------EEEEEeCCCCcEEeeeeec----CCCCcccEEEEeCC--CCEEEEEc
Confidence 4566666667777664321 14555444433 334443 35678999999994 47788899
Q ss_pred ccccEEEeec
Q 003032 177 FYGRVTIWTQ 186 (855)
Q Consensus 177 f~GRvtIWtQ 186 (855)
.+|.|.||.-
T Consensus 72 ~dg~i~vwd~ 81 (372)
T 1k8k_C 72 TDRNAYVWTL 81 (372)
T ss_dssp TTSCEEEEEE
T ss_pred CCCeEEEEEC
Confidence 9999999975
No 20
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=45.10 E-value=60 Score=27.73 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=28.9
Q ss_pred CCCCceEEEEecCCCcchheeeeeccccEEEeecC
Q 003032 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQP 187 (855)
Q Consensus 153 sp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQP 187 (855)
...+.|..+.|+|..-.+-|+.+..+|.|.||.=.
T Consensus 108 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 108 DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 34678999999998656778899999999999743
No 21
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=44.56 E-value=37 Score=30.65 Aligned_cols=32 Identities=6% Similarity=0.055 Sum_probs=27.5
Q ss_pred CCceEEEEecCCC--------cchheeeeeccccEEEeec
Q 003032 155 RDSVQFIEWSPTS--------CPRALLIANFYGRVTIWTQ 186 (855)
Q Consensus 155 ~dsvq~ieWSp~~--------cpRALLiAnf~GRvtIWtQ 186 (855)
.+.|..+.|+|.. -++.|+.+..+|+|.||.-
T Consensus 354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred CCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 6789999999986 4478999999999999964
No 22
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=44.53 E-value=56 Score=30.31 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=27.1
Q ss_pred CCCceEEEEecCCCcchheeeeeccccEEEeecC
Q 003032 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQP 187 (855)
Q Consensus 154 p~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQP 187 (855)
..+.|..|.|+|.. .+-|+.+..+|.|.||.=.
T Consensus 130 h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~ 162 (402)
T 2aq5_A 130 HTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVG 162 (402)
T ss_dssp CSSCEEEEEECSSB-TTEEEEEETTSCEEEEETT
T ss_pred CCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECC
Confidence 45789999999986 4568888999999999743
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=43.48 E-value=44 Score=28.97 Aligned_cols=72 Identities=11% Similarity=0.195 Sum_probs=46.0
Q ss_pred chhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEE-eecCCCCCceEEEEecCCCcchheeeeec
Q 003032 99 SAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFN-VIADCPRDSVQFIEWSPTSCPRALLIANF 177 (855)
Q Consensus 99 savawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfn-V~adsp~dsvq~ieWSp~~cpRALLiAnf 177 (855)
.+++|....+.|+++.+.+ |.|...+...+...+. +......+.|..+.|+|.. +-|+++..
T Consensus 55 ~~~~~~~~~~~l~~~~dg~---------------i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~ 117 (337)
T 1gxr_A 55 CAVTISNPTRHVYTGGKGC---------------VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG--CTLIVGGE 117 (337)
T ss_dssp CEEEECSSSSEEEEECBSE---------------EEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS--SEEEEEES
T ss_pred EEEEEecCCcEEEEcCCCe---------------EEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC--CEEEEEcC
Confidence 4566777777777765322 3444444333322222 2223456789999999964 57888899
Q ss_pred cccEEEeecC
Q 003032 178 YGRVTIWTQP 187 (855)
Q Consensus 178 ~GRvtIWtQP 187 (855)
+|.|.||.-.
T Consensus 118 d~~i~~~d~~ 127 (337)
T 1gxr_A 118 ASTLSIWDLA 127 (337)
T ss_dssp SSEEEEEECC
T ss_pred CCcEEEEECC
Confidence 9999999743
No 24
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=40.92 E-value=54 Score=29.28 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=28.3
Q ss_pred CCCCceEEEEecCCCcchheeeeeccccEEEeecCCC
Q 003032 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSH 189 (855)
Q Consensus 153 sp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQPsq 189 (855)
...+.|..+.|+|.. +.|+.+..+|+|.||.=.+.
T Consensus 332 ~~~~~v~~~~~s~~~--~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 332 GHYKTVDCCVFQSNF--QELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp CCSSCEEEEEEETTT--TEEEEEETTSCEEEEEECC-
T ss_pred cCCCeEEEEEEcCCC--CEEEEECCCCeEEEEeCCCC
Confidence 456789999999975 67889999999999975444
No 25
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=39.79 E-value=55 Score=29.31 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=44.5
Q ss_pred cchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeeec
Q 003032 98 FSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF 177 (855)
Q Consensus 98 Fsavawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAnf 177 (855)
..+++|+...+.|+++++... |.|...+..+....| ......|..+.|+|.. -|+.+..
T Consensus 250 i~~~~~~~~~~~l~~~~~d~~--------------i~i~d~~~~~~~~~~----~~~~~~i~~~~~~~~~---~l~~~~~ 308 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDDGT--------------LRIWHGGNGNSQNCF----YGHSQSIVSASWVGDD---KVISCSM 308 (425)
T ss_dssp EEEEEEETTTTEEEEEETTSC--------------EEEECSSSBSCSEEE----CCCSSCEEEEEEETTT---EEEEEET
T ss_pred eEEEEECCCCCEEEEEcCCCE--------------EEEEECCCCccceEe----cCCCccEEEEEECCCC---EEEEEeC
Confidence 345666666666766654211 444444443333333 2346689999999987 7888899
Q ss_pred cccEEEeec
Q 003032 178 YGRVTIWTQ 186 (855)
Q Consensus 178 ~GRvtIWtQ 186 (855)
+|+|.||.-
T Consensus 309 d~~i~i~d~ 317 (425)
T 1r5m_A 309 DGSVRLWSL 317 (425)
T ss_dssp TSEEEEEET
T ss_pred CCcEEEEEC
Confidence 999999974
No 26
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=39.64 E-value=65 Score=28.75 Aligned_cols=34 Identities=21% Similarity=0.504 Sum_probs=27.3
Q ss_pred CCCCceEEEEecCCCcchheeeeeccccEEEeecC
Q 003032 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQP 187 (855)
Q Consensus 153 sp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQP 187 (855)
.-.+.|..+.|+|.. .+-|+.+..+|.|.||.-.
T Consensus 97 ~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~ 130 (408)
T 4a11_B 97 VHRYSVETVQWYPHD-TGMFTSSSFDKTLKVWDTN 130 (408)
T ss_dssp CCSSCEEEEEECTTC-TTCEEEEETTSEEEEEETT
T ss_pred cCCCcEEEEEEccCC-CcEEEEEeCCCeEEEeeCC
Confidence 456789999999953 4568888999999999644
No 27
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=39.12 E-value=58 Score=29.76 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=46.7
Q ss_pred cchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeeec
Q 003032 98 FSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF 177 (855)
Q Consensus 98 Fsavawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAnf 177 (855)
-.+++|....+.|+.+++.. =|+|...+..+....|. ...+.|..+.|+|. .+-|+.+..
T Consensus 142 v~~~~~~~~~~~l~s~s~d~--------------~i~iwd~~~~~~~~~~~----~h~~~v~~~~~~~~--~~~l~s~~~ 201 (420)
T 3vl1_A 142 ITKLKFFPSGEALISSSQDM--------------QLKIWSVKDGSNPRTLI----GHRATVTDIAIIDR--GRNVLSASL 201 (420)
T ss_dssp EEEEEECTTSSEEEEEETTS--------------EEEEEETTTCCCCEEEE----CCSSCEEEEEEETT--TTEEEEEET
T ss_pred cEEEEECCCCCEEEEEeCCC--------------eEEEEeCCCCcCceEEc----CCCCcEEEEEEcCC--CCEEEEEcC
Confidence 34566666666666654421 15555555555555543 45678999999996 467888999
Q ss_pred cccEEEeecC
Q 003032 178 YGRVTIWTQP 187 (855)
Q Consensus 178 ~GRvtIWtQP 187 (855)
+|.|.||.-.
T Consensus 202 d~~v~iwd~~ 211 (420)
T 3vl1_A 202 DGTIRLWECG 211 (420)
T ss_dssp TSCEEEEETT
T ss_pred CCcEEEeECC
Confidence 9999999643
No 28
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=35.84 E-value=76 Score=27.77 Aligned_cols=31 Identities=10% Similarity=0.062 Sum_probs=26.1
Q ss_pred CCCceEEEEecCCCcchheeeeeccccEEEeec
Q 003032 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQ 186 (855)
Q Consensus 154 p~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQ 186 (855)
..+.|..+.|+|.+ +-|+.+..+|+|.||.=
T Consensus 314 ~~~~v~~~~~s~~~--~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 314 HFGPLNTVAISPQG--TSYASGGEDGFIRLHHF 344 (369)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTSEEEEEEE
T ss_pred ccCcEEEEEECCCC--CEEEEEcCCCeEEEEEC
Confidence 46789999999965 57888899999999963
No 29
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=35.58 E-value=34 Score=32.07 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=27.4
Q ss_pred CCCceEEEEecCCCcchheeeeeccccEEEeecCCCCCC
Q 003032 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPA 192 (855)
Q Consensus 154 p~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQPsqg~~ 192 (855)
-.+.|..+.|||.. .+-|+.+-.+|+|.||.=|+.|..
T Consensus 310 H~~~V~~vafsP~d-~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 310 HRDFVTGVAWSPLD-HSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp CSSCEEEEEECSSS-TTEEEEEETTSCEEEEECC-----
T ss_pred CCCCEEEEEEeCCC-CCEEEEEcCCCeEEEEECCCCCcc
Confidence 46789999999853 345777889999999999888765
No 30
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=35.53 E-value=5 Score=32.24 Aligned_cols=32 Identities=31% Similarity=0.660 Sum_probs=22.1
Q ss_pred ccCCCcccccccceEEecCCceEEeeecccCCceEEEEEeeCCCC
Q 003032 296 LLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPG 340 (855)
Q Consensus 296 lLg~GpSGIma~DAIItdsGamhVAGVpivNPSTVVVWEV~pg~g 340 (855)
++|+||+|.++|-.. .=+|+ .|+|.|=.+++|
T Consensus 7 IIGaGpaGL~aA~~L-------a~~G~------~V~v~Ek~~~~G 38 (336)
T 3kkj_A 7 IIGTGIAGLSAAQAL-------TAAGH------QVHLFDKSRGSG 38 (336)
T ss_dssp EECCSHHHHHHHHHH-------HHTTC------CEEEECSSSSSC
T ss_pred EECcCHHHHHHHHHH-------HHCCC------CEEEEECCCCCC
Confidence 579999999998532 22343 478888766665
No 31
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=35.53 E-value=61 Score=28.42 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=38.4
Q ss_pred EEEecCCCCcceeEEEeecCC-CCCceEEEEecCCCc--chheeeeeccccEEEeec
Q 003032 133 IHIVIPERPTECAVFNVIADC-PRDSVQFIEWSPTSC--PRALLIANFYGRVTIWTQ 186 (855)
Q Consensus 133 IhIviPerPtE~avfnV~ads-p~dsvq~ieWSp~~c--pRALLiAnf~GRvtIWtQ 186 (855)
|.|...+.-.+...+....+. ....|..+.|+|..- -+-|+.+..+|.|.||.=
T Consensus 46 v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~ 102 (366)
T 3k26_A 46 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINP 102 (366)
T ss_dssp EEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECT
T ss_pred EEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEc
Confidence 555555555555555544433 456799999999876 367888999999999963
No 32
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=35.46 E-value=69 Score=30.33 Aligned_cols=51 Identities=8% Similarity=0.028 Sum_probs=39.2
Q ss_pred EEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeeeccccEEEee
Q 003032 133 IHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWT 185 (855)
Q Consensus 133 IhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWt 185 (855)
|.|...+......++......-.+.|..+.|||.+ +-|+.+..+|.|.||.
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg--~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG--TQAVSGSKDICIKVWD 155 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS--SEEEEEETTSCEEEEE
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCC--CEEEEEeCCCeEEEEE
Confidence 55556666666666666666677899999999975 5688899999999995
No 33
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=34.22 E-value=99 Score=27.77 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=28.2
Q ss_pred CCCceEEEEecCCCcchheeeeeccccEEEeecCCCC
Q 003032 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHG 190 (855)
Q Consensus 154 p~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQPsqg 190 (855)
..+.|..+.|||.. +-|..+..+|+|.||.....|
T Consensus 253 ~~~~v~~~~~s~~g--~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 253 FPDVLWRASWSLSG--NVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp CSSCEEEEEECSSS--CCEEEEETTSCEEEEEECTTS
T ss_pred CCCcEEEEEECCCC--CEEEEEcCCCcEEEEEECCCC
Confidence 35789999999975 567788999999999865443
No 34
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=34.14 E-value=84 Score=28.22 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=28.2
Q ss_pred CCCCceEEEEecCCC-cchheeeeeccccEEEeecC
Q 003032 153 CPRDSVQFIEWSPTS-CPRALLIANFYGRVTIWTQP 187 (855)
Q Consensus 153 sp~dsvq~ieWSp~~-cpRALLiAnf~GRvtIWtQP 187 (855)
.-.+.|..+.|+|.. ..+-|+.+..+|.|.||..-
T Consensus 202 ~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 202 GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 346789999999986 34668888999999999753
No 35
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=32.91 E-value=92 Score=27.33 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=46.2
Q ss_pred ccchhhhhcccc-ceeccccccccCCCCCCCCCceeeEEEecC-CCCcceeEEEeecCCCCCceEEEEecCCCcchheee
Q 003032 97 NFSAVAWCGKLN-AIACASETCARIPSSNANTPFWIPIHIVIP-ERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLI 174 (855)
Q Consensus 97 nFsavawc~klN-~Iaca~eTCarip~S~~np~FWiPIhIviP-erPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLi 174 (855)
...+++|+..-+ .|+++++.. =|++... +.- +...+ ....-.+.|..|.|+| .+-|+.
T Consensus 58 ~v~~~~~~~~~~~~l~~~~~dg--------------~i~~wd~~~~~-~~~~~--~~~~~~~~v~~l~~~~---~~~l~s 117 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGTVQG--------------EILKVDLIGSP-SFQAL--TNNEANLGICRICKYG---DDKLIA 117 (342)
T ss_dssp CEEEEEEEESSSEEEEEEETTS--------------CEEEECSSSSS-SEEEC--BSCCCCSCEEEEEEET---TTEEEE
T ss_pred ceEEEEECCCCCcEEEEEcCCC--------------eEEEEEeccCC-ceEec--cccCCCCceEEEEeCC---CCEEEE
Confidence 456778887777 677765431 1445444 322 22111 1111567899999999 788999
Q ss_pred eeccccEEEeecC
Q 003032 175 ANFYGRVTIWTQP 187 (855)
Q Consensus 175 Anf~GRvtIWtQP 187 (855)
+..+|.|.||.-.
T Consensus 118 ~~~d~~i~iwd~~ 130 (342)
T 1yfq_A 118 ASWDGLIEVIDPR 130 (342)
T ss_dssp EETTSEEEEECHH
T ss_pred EcCCCeEEEEccc
Confidence 9999999999643
No 36
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=32.51 E-value=98 Score=27.29 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=27.8
Q ss_pred CCCCceEEEEecCCCc-chheeeeeccccEEEeecC
Q 003032 153 CPRDSVQFIEWSPTSC-PRALLIANFYGRVTIWTQP 187 (855)
Q Consensus 153 sp~dsvq~ieWSp~~c-pRALLiAnf~GRvtIWtQP 187 (855)
...+.|..+.|+|..- .+-|+.+..+|.|.||.-.
T Consensus 204 ~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 204 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 3457799999999742 4678889999999999644
No 37
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=32.28 E-value=19 Score=29.31 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhhHHHHHHHhhhH
Q 003032 789 SIQAYVDAVLDLASHFITRLRRY 811 (855)
Q Consensus 789 ~iqayvdavldlashfitrlrry 811 (855)
-++.|+|.+++...+++++|||-
T Consensus 33 ~~~~~~~~~v~~in~~l~~lrrL 55 (60)
T 2g31_A 33 LVQKYSNSALGHVNCTIKELRRL 55 (60)
T ss_dssp HHHHHHHHGGGTCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHh
Confidence 36889999999999999999984
No 38
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=31.99 E-value=36 Score=32.42 Aligned_cols=31 Identities=19% Similarity=0.556 Sum_probs=24.9
Q ss_pred CCceEEEEecCCCcchheeeeeccccEEEeec
Q 003032 155 RDSVQFIEWSPTSCPRALLIANFYGRVTIWTQ 186 (855)
Q Consensus 155 ~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQ 186 (855)
.+.|++|+|+|. -++-|..+..+|.|.||.=
T Consensus 119 ~~~V~~l~~~P~-~~~~lasGs~dg~i~lWd~ 149 (435)
T 4e54_B 119 DRRATSLAWHPT-HPSTVAVGSKGGDIMLWNF 149 (435)
T ss_dssp SSCEEEEEECSS-CTTCEEEEETTSCEEEECS
T ss_pred CCCEEEEEEeCC-CCCEEEEEeCCCEEEEEEC
Confidence 356999999995 3566778899999999953
No 39
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=31.88 E-value=96 Score=28.58 Aligned_cols=68 Identities=12% Similarity=0.183 Sum_probs=44.2
Q ss_pred chhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeeecc
Q 003032 99 SAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFY 178 (855)
Q Consensus 99 savawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAnf~ 178 (855)
.+++|....+.|+++++... |.|...+.......| ....+.|..+.|+|.. +-|+.+..+
T Consensus 210 ~~l~~spd~~~l~s~s~dg~--------------i~iwd~~~~~~~~~~----~~h~~~v~~~~~sp~~--~~l~s~s~D 269 (321)
T 3ow8_A 210 RSLTFSPDSQLLVTASDDGY--------------IKIYDVQHANLAGTL----SGHASWVLNVAFCPDD--THFVSSSSD 269 (321)
T ss_dssp CEEEECTTSCEEEEECTTSC--------------EEEEETTTCCEEEEE----CCCSSCEEEEEECTTS--SEEEEEETT
T ss_pred eEEEEcCCCCEEEEEcCCCe--------------EEEEECCCcceeEEE----cCCCCceEEEEECCCC--CEEEEEeCC
Confidence 45666666666776654321 444444443333322 2356789999999975 468889999
Q ss_pred ccEEEeec
Q 003032 179 GRVTIWTQ 186 (855)
Q Consensus 179 GRvtIWtQ 186 (855)
|.|.||.=
T Consensus 270 ~~v~iwd~ 277 (321)
T 3ow8_A 270 KSVKVWDV 277 (321)
T ss_dssp SCEEEEET
T ss_pred CcEEEEeC
Confidence 99999963
No 40
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=31.35 E-value=65 Score=28.17 Aligned_cols=57 Identities=5% Similarity=0.002 Sum_probs=32.4
Q ss_pred ceeeEEEecCCCCcceeEEEe-ecCCCCCceEEEEecCCCcchheeeeeccccEEEeecC
Q 003032 129 FWIPIHIVIPERPTECAVFNV-IADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQP 187 (855)
Q Consensus 129 FWiPIhIviPerPtE~avfnV-~adsp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQP 187 (855)
-|.|-+....++.+.=..+.. .-..-.+.|..+.|||. .+-|+.+..+|.|.||.=.
T Consensus 5 ~~~~~~~~~~~~~~~G~~~~~~~l~~h~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~ 62 (369)
T 3zwl_B 5 HHHHHHSSGENLYFQGSHMKAIKLTGHERPLTQVKYNKE--GDLLFSCSKDSSASVWYSL 62 (369)
T ss_dssp --------CCCCCSSCCSEEEEEEECCSSCEEEEEECTT--SCEEEEEESSSCEEEEETT
T ss_pred cccccccCCcceEEeccccccEEEEEeeceEEEEEEcCC--CCEEEEEeCCCEEEEEeCC
Confidence 344444444444333333322 22345678999999995 4578888999999999643
No 41
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=30.98 E-value=80 Score=29.00 Aligned_cols=33 Identities=15% Similarity=0.480 Sum_probs=28.9
Q ss_pred CceEEEEecCCCcchheeeeeccccEEEeecCC
Q 003032 156 DSVQFIEWSPTSCPRALLIANFYGRVTIWTQPS 188 (855)
Q Consensus 156 dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQPs 188 (855)
+.|..|.|+|..-..-|+.+..+|.|.||.-.+
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~ 126 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISE 126 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEE
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEeccc
Confidence 779999999998778899999999999997543
No 42
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=30.64 E-value=44 Score=29.23 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=26.7
Q ss_pred CCCCceEEEEecCCCcchheeeeeccccEEEee
Q 003032 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWT 185 (855)
Q Consensus 153 sp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWt 185 (855)
+=.+.|..|.|+|.. ++-|+.+-.+|.|.||.
T Consensus 36 GH~~~V~~v~~sp~~-~~~l~S~s~D~~i~vWd 67 (340)
T 4aow_A 36 GHNGWVTQIATTPQF-PDMILSASRDKTIIMWK 67 (340)
T ss_dssp CCSSCEEEEEECTTC-TTEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEEeCCC-CCEEEEEcCCCeEEEEE
Confidence 457899999999863 56677788999999996
No 43
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=30.53 E-value=89 Score=29.11 Aligned_cols=51 Identities=10% Similarity=0.160 Sum_probs=36.7
Q ss_pred EEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeeeccccEEEeecC
Q 003032 133 IHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQP 187 (855)
Q Consensus 133 IhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQP 187 (855)
|.|...+....+..|. .....|..+.|+|....+-|+.+..+|.|.||.-.
T Consensus 178 v~lwd~~~~~~~~~~~----~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~ 228 (354)
T 2pbi_B 178 CALWDVESGQLLQSFH----GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228 (354)
T ss_dssp EEEEETTTCCEEEEEE----CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT
T ss_pred EEEEeCCCCeEEEEEc----CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 4455555544444443 34567999999998777889999999999999743
No 44
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=30.14 E-value=1.4e+02 Score=26.68 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=27.9
Q ss_pred CCCceEEEEecCCCcchheeeeeccccEEEeecCCC
Q 003032 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSH 189 (855)
Q Consensus 154 p~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQPsq 189 (855)
....|..+.|+|.. +-|+.+..+|.|.||.-.+.
T Consensus 246 ~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 246 HHGPISVLEFNDTN--KLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp CSSCEEEEEEETTT--TEEEEEETTSCEEEECSSSB
T ss_pred CCCceEEEEECCCC--CEEEEEcCCCEEEEEECCCC
Confidence 45679999999965 57888899999999986554
No 45
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=29.94 E-value=1.1e+02 Score=27.09 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=46.8
Q ss_pred cchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeeec
Q 003032 98 FSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF 177 (855)
Q Consensus 98 Fsavawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAnf 177 (855)
..+++|....+.|+++++.. -|.|...+..+....|. ...+.|..+.|+|.. +-|+.+..
T Consensus 68 v~~~~~~~~~~~l~s~~~d~--------------~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~--~~l~s~~~ 127 (312)
T 4ery_A 68 ISDVAWSSDSNLLVSASDDK--------------TLKIWDVSSGKCLKTLK----GHSNYVFCCNFNPQS--NLIVSGSF 127 (312)
T ss_dssp EEEEEECTTSSEEEEEETTS--------------EEEEEETTTCCEEEEEE----CCSSCEEEEEECSSS--SEEEEEET
T ss_pred eEEEEEcCCCCEEEEECCCC--------------EEEEEECCCCcEEEEEc----CCCCCEEEEEEcCCC--CEEEEEeC
Confidence 45677877777787765432 14555554444444443 346779999999964 56888899
Q ss_pred cccEEEeec
Q 003032 178 YGRVTIWTQ 186 (855)
Q Consensus 178 ~GRvtIWtQ 186 (855)
+|.|.||.-
T Consensus 128 d~~i~iwd~ 136 (312)
T 4ery_A 128 DESVRIWDV 136 (312)
T ss_dssp TSCEEEEET
T ss_pred CCcEEEEEC
Confidence 999999964
No 46
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=29.81 E-value=52 Score=25.65 Aligned_cols=59 Identities=10% Similarity=0.296 Sum_probs=46.8
Q ss_pred eeeeeccCCchHHHHHHHHhhhHHHHHHHhhcchhhhccCCCCCCCCccccccccccCCC
Q 003032 717 IKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGID 776 (855)
Q Consensus 717 ikcrlleg~naqevramvldmqarllldmlgkgiesalinpsalv~epwqas~etls~i~ 776 (855)
|...+++|.+.++-|+++-.+ .++|-+.||+--+...|.=.-.-++-|-..|++++.+-
T Consensus 4 I~I~~~~grs~eqK~~L~~~i-t~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~~~e~r 62 (72)
T 3mb2_A 4 LRITMLEGRSTEQKAELARAL-SAAAAAAFDVPLAEVRLIIQEVPPTHWTVGGISMAELR 62 (72)
T ss_dssp EEEEEESCCCHHHHHHHHHHH-HHHHHHHHTCCGGGEEEEEEEECGGGEEETTEETTCC-
T ss_pred EEEEEcCCCCHHHHHHHHHHH-HHHHHHHhCCCcccEEEEEEEcCHHHeeECCEEHHHHH
Confidence 567788998887777776555 57788999999888888777777889999999988754
No 47
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=29.66 E-value=1.2e+02 Score=27.40 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=44.2
Q ss_pred hhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeeeccc
Q 003032 100 AVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYG 179 (855)
Q Consensus 100 avawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAnf~G 179 (855)
++++....|.|+.+++.. =|.|...+.-..+..|. .-.+.|..|.|+|.. +-|+.+..+|
T Consensus 60 ~~~~~~~~~~l~s~s~d~--------------~i~vwd~~~~~~~~~~~----~h~~~v~~~~~~~~~--~~l~sgs~D~ 119 (304)
T 2ynn_A 60 AGKFIARKNWIIVGSDDF--------------RIRVFNYNTGEKVVDFE----AHPDYIRSIAVHPTK--PYVLSGSDDL 119 (304)
T ss_dssp EEEEEGGGTEEEEEETTS--------------EEEEEETTTCCEEEEEE----CCSSCEEEEEECSSS--SEEEEEETTS
T ss_pred EEEEeCCCCEEEEECCCC--------------EEEEEECCCCcEEEEEe----CCCCcEEEEEEcCCC--CEEEEECCCC
Confidence 445555667777665431 14555555444444443 356789999999975 4678899999
Q ss_pred cEEEee
Q 003032 180 RVTIWT 185 (855)
Q Consensus 180 RvtIWt 185 (855)
.|.||.
T Consensus 120 ~v~lWd 125 (304)
T 2ynn_A 120 TVKLWN 125 (304)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 999996
No 48
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=28.46 E-value=82 Score=28.70 Aligned_cols=73 Identities=12% Similarity=0.236 Sum_probs=47.8
Q ss_pred cchhhhhccc-cceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeee
Q 003032 98 FSAVAWCGKL-NAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIAN 176 (855)
Q Consensus 98 Fsavawc~kl-N~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAn 176 (855)
..+++|+..- +.++++++.. . |.|...+.......+. .....+.|..+.|+|.. .+-|+.+.
T Consensus 76 v~~~~~~~~~~~~l~s~~~dg-------~-------i~iwd~~~~~~~~~~~--~~~h~~~v~~~~~~~~~-~~~l~s~~ 138 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSKGG-------D-------IILWDYDVQNKTSFIQ--GMGPGDAITGMKFNQFN-TNQLFVSS 138 (383)
T ss_dssp EEEEEECSSCTTEEEEEEBTS-------C-------EEEEETTSTTCEEEEC--CCSTTCBEEEEEEETTE-EEEEEEEE
T ss_pred EEEEEECCCCCCEEEEEcCCC-------e-------EEEEeCCCcccceeee--cCCcCCceeEEEeCCCC-CCEEEEEe
Confidence 4456676665 6677765421 1 4555555444444432 23466789999999853 46788899
Q ss_pred ccccEEEeecC
Q 003032 177 FYGRVTIWTQP 187 (855)
Q Consensus 177 f~GRvtIWtQP 187 (855)
.+|.|.||.-.
T Consensus 139 ~d~~i~iwd~~ 149 (383)
T 3ei3_B 139 IRGATTLRDFS 149 (383)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEEECC
Confidence 99999999754
No 49
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=28.41 E-value=61 Score=28.35 Aligned_cols=37 Identities=24% Similarity=0.560 Sum_probs=30.4
Q ss_pred CCCCCceEEEEecCCCcc-hheeeeeccccEEEeecCC
Q 003032 152 DCPRDSVQFIEWSPTSCP-RALLIANFYGRVTIWTQPS 188 (855)
Q Consensus 152 dsp~dsvq~ieWSp~~cp-RALLiAnf~GRvtIWtQPs 188 (855)
....+.|..|.|+|..-+ +-|+.+..+|.|.||.-.+
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~ 73 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD 73 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC
Confidence 566789999999997533 6788889999999998654
No 50
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=27.82 E-value=69 Score=28.14 Aligned_cols=37 Identities=24% Similarity=0.455 Sum_probs=29.8
Q ss_pred cCCCCCceEEEEecCCCcchheeeeeccccEEEeecCCC
Q 003032 151 ADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSH 189 (855)
Q Consensus 151 adsp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQPsq 189 (855)
.....+.|..+.|+|. .+-|+.+..+|.|.||.-.+.
T Consensus 7 ~~~h~~~v~~~~~s~~--~~~l~~~~~d~~v~iw~~~~~ 43 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQ 43 (342)
T ss_dssp SSCCSSCEEEEEEEGG--GTEEEEEETTSEEEEEEEETT
T ss_pred ccCCCCcEEEEEEcCC--CCEEEEEcCCCeEEEEEeCCC
Confidence 3467789999999995 467888899999999975544
No 51
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=27.72 E-value=51 Score=28.84 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=25.1
Q ss_pred CCCceEEEEecCCCcchheeeeeccccEEEee
Q 003032 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWT 185 (855)
Q Consensus 154 p~dsvq~ieWSp~~cpRALLiAnf~GRvtIWt 185 (855)
-.+.|..+.|||.+ +-|+.+..+|+|.||.
T Consensus 305 h~~~v~~l~~s~dg--~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 305 EPPQCTSLAWSADG--QTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp CCCCEEEEEECTTS--SEEEEEETTSCEEEEE
T ss_pred CCCCEEEEEECCCC--CEEEEEeCCCEEEEEe
Confidence 34579999999975 6788889999999994
No 52
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=26.09 E-value=49 Score=30.43 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=27.6
Q ss_pred CCCceEEEEecCCCcchheeeeeccccEEEeecCCC
Q 003032 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSH 189 (855)
Q Consensus 154 p~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQPsq 189 (855)
..|.|..++|||. .+-|+.+..+|+|.||.-.+.
T Consensus 27 ~~~~V~~v~~s~~--g~~la~g~~dg~v~iw~~~~~ 60 (447)
T 3dw8_B 27 EADIISTVEFNHS--GELLATGDKGGRVVIFQQEQE 60 (447)
T ss_dssp GGGSEEEEEECSS--SSEEEEEETTSEEEEEEECC-
T ss_pred ccCcEEEEEECCC--CCEEEEEcCCCeEEEEEecCC
Confidence 3578999999995 467888899999999986554
No 53
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=25.40 E-value=52 Score=25.00 Aligned_cols=57 Identities=26% Similarity=0.450 Sum_probs=41.9
Q ss_pred eeeeeccCCchHHHHHHHHhhhHHHHHHHhhcchhhhccCCCCCCCCccccccccccC
Q 003032 717 IKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSG 774 (855)
Q Consensus 717 ikcrlleg~naqevramvldmqarllldmlgkgiesalinpsalv~epwqas~etls~ 774 (855)
|+..+++|.+.+.-|+|+-.+ .++|.+.||.--+...|.=.-.-++-|...|++++.
T Consensus 3 i~I~~~~Grs~eqk~~L~~~i-t~~~~~~lg~p~~~v~V~i~e~~~~~w~~gG~~~~e 59 (65)
T 3ry0_A 3 IRVTLLEGRSPQEVAALGEAL-TAAAHETLGTPVEAVRVIVEETPPERWFVGGRSVAE 59 (65)
T ss_dssp EEEEEESCCCHHHHHHHHHHH-HHHHHHHHCCCGGGCEEEEEEECGGGCEETTEEHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHH-HHHHHHHhCcCcccEEEEEEEcCHHHeeECCEEHHH
Confidence 566788999888877776555 567788899887777766666667777777776653
No 54
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=24.85 E-value=1.2e+02 Score=28.20 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=26.3
Q ss_pred CCCCceEEEEecCCCcchheeeeeccccEEEee
Q 003032 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWT 185 (855)
Q Consensus 153 sp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWt 185 (855)
.-.+.|..+.|||.+ +.|+.+..+|.|.||.
T Consensus 324 ~h~~~v~~l~~spdg--~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 324 GHENRVSTLRVSPDG--TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CCSSCEEEEEECTTS--SCEEEEETTSEEEEEC
T ss_pred CCCCcEEEEEECCCC--CEEEEEcCCCCEEecC
Confidence 345789999999975 5788999999999994
No 55
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=24.57 E-value=71 Score=23.02 Aligned_cols=56 Identities=16% Similarity=0.355 Sum_probs=43.5
Q ss_pred eeeeeccCCchHHHHHHHHhhhHHHHHHHhhcchhhhccCCCCCCCCcccccccccc
Q 003032 717 IKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLS 773 (855)
Q Consensus 717 ikcrlleg~naqevramvldmqarllldmlgkgiesalinpsalv~epwqas~etls 773 (855)
|+.++++|.+.++-+++.-.+ .++|.+.||+.-+...|.=...-++-|-..|++++
T Consensus 6 i~i~~~~g~s~e~k~~l~~~l-~~~l~~~lg~p~~~v~v~i~e~~~~~~~~~G~~~~ 61 (63)
T 2x4k_A 6 VNVKLLEGRSDEQLKNLVSEV-TDAVEKTTGANRQAIHVVIEEMKPNHYGVAGVRKS 61 (63)
T ss_dssp EEEEEESCCCHHHHHHHHHHH-HHHHHHHHCCCGGGCEEEEEEECGGGCEETTEETT
T ss_pred EEEEEcCCCCHHHHHHHHHHH-HHHHHHHhCcCcccEEEEEEEcCHHHeeECCEEcC
Confidence 677889999877777765555 56777999999888877766777788888888765
No 56
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=24.34 E-value=60 Score=29.30 Aligned_cols=33 Identities=6% Similarity=0.059 Sum_probs=28.2
Q ss_pred CCCCceEEEEecCCCcchheeeeeccccEEEeecCCC
Q 003032 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSH 189 (855)
Q Consensus 153 sp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQPsq 189 (855)
.-.+.|..|.|+| +-|+.+..+|.|.||.-.+.
T Consensus 14 ~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~ 46 (397)
T 1sq9_A 14 AHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLL 46 (397)
T ss_dssp CSSSCEEEEEECS----SEEEEEETTSEEEEEESBCC
T ss_pred hhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCc
Confidence 4567899999998 78889999999999987654
No 57
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=24.27 E-value=1e+02 Score=31.73 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=26.0
Q ss_pred CCCceEEEEecCCC--c--chheeeeeccccEEEeecC
Q 003032 154 PRDSVQFIEWSPTS--C--PRALLIANFYGRVTIWTQP 187 (855)
Q Consensus 154 p~dsvq~ieWSp~~--c--pRALLiAnf~GRvtIWtQP 187 (855)
..+.|..+.|+|.+ . .+-|..+..+|.|.||.=.
T Consensus 206 ~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~ 243 (524)
T 2j04_B 206 SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEII 243 (524)
T ss_dssp CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECC
T ss_pred cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcC
Confidence 35679999999973 1 3456678899999999754
No 58
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=24.24 E-value=1.1e+02 Score=28.08 Aligned_cols=37 Identities=22% Similarity=0.513 Sum_probs=28.2
Q ss_pred EEeecCCCCCceEEEEecCCCcchheeeeeccccEEEee
Q 003032 147 FNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWT 185 (855)
Q Consensus 147 fnV~adsp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWt 185 (855)
+....+-+...|..+.|||.+ +-|+.+-.+|.|.||.
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g--~~las~~~D~~i~iw~ 44 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAG--TLLASCGGDRRIRIWG 44 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTS--SCEEEEETTSCEEEEE
T ss_pred eeeecCCCCCcEEEEEECCCC--CEEEEEcCCCeEEEEE
Confidence 344444455589999999976 5677888999999995
No 59
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=23.91 E-value=1.4e+02 Score=27.49 Aligned_cols=47 Identities=15% Similarity=0.300 Sum_probs=33.7
Q ss_pred eEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeeec-cccEEEee
Q 003032 132 PIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF-YGRVTIWT 185 (855)
Q Consensus 132 PIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAnf-~GRvtIWt 185 (855)
-|+++..+.-+....+.. .+.+..+.|+|.. +.|++++. +|+|.||.
T Consensus 382 ~v~~~d~~~~~~~~~~~~-----~~~~~~~~~s~dg--~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 382 KVYVIDTTTDTVKEFWEA-----GNQPTGLDVSPDN--RYLVISDFLDHQIRVYR 429 (433)
T ss_dssp EEEEEETTTTEEEEEEEC-----SSSEEEEEECTTS--CEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCcEEEEecC-----CCCCceEEEcCCC--CEEEEEECCCCeEEEEE
Confidence 366676666555555543 4578999999964 56777775 99999995
No 60
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=23.73 E-value=78 Score=28.82 Aligned_cols=33 Identities=27% Similarity=0.524 Sum_probs=27.4
Q ss_pred CCceEEEEecCCCcchheeeeeccccEEEeecCCC
Q 003032 155 RDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSH 189 (855)
Q Consensus 155 ~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQPsq 189 (855)
.+.|..+.|||.. +-|+.+..+|.|.||.....
T Consensus 262 ~~~v~~v~~sp~g--~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 262 NDVVWHVSWSITA--NILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp SSCEEEEEECTTT--CCEEEEESSSCEEEEEECTT
T ss_pred CCcEEEEEEcCCC--CEEEEEcCCCeEEEEEECCC
Confidence 5789999999985 66788899999999976433
No 61
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=23.41 E-value=1.6e+02 Score=26.92 Aligned_cols=30 Identities=10% Similarity=0.264 Sum_probs=25.0
Q ss_pred CCceEEEEecCCCcchheeeeeccccEEEeec
Q 003032 155 RDSVQFIEWSPTSCPRALLIANFYGRVTIWTQ 186 (855)
Q Consensus 155 ~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQ 186 (855)
...|..+.|+|.. +-|+.+..+|.|.||.-
T Consensus 309 ~~~v~~~~~sp~g--~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 309 NPQCTSLAWNALG--KKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp CCCEEEEEECSSS--CCEEEEETTSEEEEEEE
T ss_pred CCceEEEEECCCC--CeEEEecCCceEEEEEE
Confidence 4569999999976 56788899999999963
No 62
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=23.36 E-value=84 Score=29.43 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=41.9
Q ss_pred cchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeeec
Q 003032 98 FSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF 177 (855)
Q Consensus 98 Fsavawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAnf 177 (855)
..+++|...-..+++..+-. |.|...+......+.......-.+.|..+.|+|.. +-|+.+..
T Consensus 97 V~~~~~s~d~~~l~~s~dg~---------------v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg--~~l~sgs~ 159 (357)
T 4g56_B 97 VTDVAWVSEKGILVASDSGA---------------VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG--TQAVSGGK 159 (357)
T ss_dssp EEEEEEETTTEEEEEETTSC---------------EEEC--------CCCCEEECCCSSCEEEEEECSSS--SEEEEEET
T ss_pred EEEEEEcCCCCEEEEECCCE---------------EEEeeccccceeEEEeeccCCCCCCEEEEEECCCC--CEEEEEeC
Confidence 34667776666666543322 23333332222222222333446789999999975 56888999
Q ss_pred cccEEEeecC
Q 003032 178 YGRVTIWTQP 187 (855)
Q Consensus 178 ~GRvtIWtQP 187 (855)
+|.|.||.-.
T Consensus 160 dg~v~iwd~~ 169 (357)
T 4g56_B 160 DFSVKVWDLS 169 (357)
T ss_dssp TSCEEEEETT
T ss_pred CCeEEEEECC
Confidence 9999999643
No 63
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=23.35 E-value=1.7e+02 Score=25.66 Aligned_cols=32 Identities=13% Similarity=0.334 Sum_probs=26.5
Q ss_pred CCceEEEEecCCC-cchheeeeeccccEEEeec
Q 003032 155 RDSVQFIEWSPTS-CPRALLIANFYGRVTIWTQ 186 (855)
Q Consensus 155 ~dsvq~ieWSp~~-cpRALLiAnf~GRvtIWtQ 186 (855)
.+.|..+.|+|.. ..+-|+++..+|+|.||.-
T Consensus 209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 209 KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 5679999999964 5567888999999999953
No 64
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=22.47 E-value=30 Score=29.89 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhhHHHHHHHhhhHH
Q 003032 789 SIQAYVDAVLDLASHFITRLRRYA 812 (855)
Q Consensus 789 ~iqayvdavldlashfitrlrrya 812 (855)
-++.|+|.+++....++++|||-.
T Consensus 46 ~~~~~~~~~v~~in~~l~~LRrLf 69 (79)
T 2ko2_A 46 LVQKYSNSALGHVNSTIKELRRLF 69 (79)
T ss_dssp HHHHHHHCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHh
Confidence 368999999999999999999964
No 65
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=22.37 E-value=1.8e+02 Score=27.35 Aligned_cols=32 Identities=16% Similarity=0.378 Sum_probs=26.4
Q ss_pred CCCceEEEEecCCCcchheeeeeccccEEEeecC
Q 003032 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQP 187 (855)
Q Consensus 154 p~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQP 187 (855)
-.+.|..+.|+|.. +-|+.+..+|+|.||.=.
T Consensus 255 h~~~v~~v~~~~~g--~~l~s~s~d~~v~~wd~~ 286 (393)
T 1erj_A 255 HKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNLQ 286 (393)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTSEEEEEEC-
T ss_pred CCCCEEEEEECCCC--CEEEEEeCCCEEEEEECC
Confidence 45789999999975 668889999999999743
No 66
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=22.10 E-value=72 Score=28.77 Aligned_cols=33 Identities=30% Similarity=0.570 Sum_probs=27.4
Q ss_pred CCCceEEEEecCCCcchheeeeeccccEEEeecCC
Q 003032 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPS 188 (855)
Q Consensus 154 p~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQPs 188 (855)
-.|.|..|.|||.. +-|+.+-.+|.|.||.-.+
T Consensus 12 h~~~V~~~~fsp~~--~~l~s~~~dg~v~lWd~~~ 44 (304)
T 2ynn_A 12 RSDRVKGIDFHPTE--PWVLTTLYSGRVELWNYET 44 (304)
T ss_dssp ECSCEEEEEECSSS--SEEEEEETTSEEEEEETTT
T ss_pred CCCceEEEEECCCC--CEEEEEcCCCcEEEEECCC
Confidence 45789999999986 5688899999999997443
No 67
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=21.88 E-value=96 Score=22.61 Aligned_cols=57 Identities=19% Similarity=0.374 Sum_probs=44.2
Q ss_pred eeeeeccCCchHHHHHHHHhhhHHHHHHHhhcchhhhccCCCCCCCCccccccccccC
Q 003032 717 IKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSG 774 (855)
Q Consensus 717 ikcrlleg~naqevramvldmqarllldmlgkgiesalinpsalv~epwqas~etls~ 774 (855)
|...+++|.+.++-++++-.+ .++|-+.||..-+...|.=...-++-|-..|.+++.
T Consensus 3 i~i~~~~grs~eqk~~l~~~i-~~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~~~~ 59 (61)
T 2opa_A 3 VTVKMLEGRTDEQKRNLVEKV-TEAVKETTGASEEKIVVFIEEMRKDHYAVAGKRLSD 59 (61)
T ss_dssp EEEEEESCCCHHHHHHHHHHH-HHHHHHHHCCCGGGCEEEEEEECGGGCEETTEEGGG
T ss_pred EEEEEcCCCCHHHHHHHHHHH-HHHHHHHhCcCcCeEEEEEEEcCHHHeeECCEEhhh
Confidence 566788999887777776555 467788899888888887777778888888887764
No 68
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=21.25 E-value=86 Score=28.54 Aligned_cols=35 Identities=23% Similarity=0.531 Sum_probs=28.6
Q ss_pred CCCceEEEEecCCCcchheeeeeccccEEEeecCCC
Q 003032 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSH 189 (855)
Q Consensus 154 p~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQPsq 189 (855)
-.+.|..+.|+|.. ++-|+.+..+|.|.||.-.+.
T Consensus 72 h~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~ 106 (383)
T 3ei3_B 72 FDRRVTSLEWHPTH-PTTVAVGSKGGDIILWDYDVQ 106 (383)
T ss_dssp CSSCEEEEEECSSC-TTEEEEEEBTSCEEEEETTST
T ss_pred CCCCEEEEEECCCC-CCEEEEEcCCCeEEEEeCCCc
Confidence 45789999999975 467889999999999975543
No 69
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=21.23 E-value=1e+02 Score=24.63 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=48.4
Q ss_pred eeeeeccCCchHHHHHHHHhhhHHHHHHHhhcchhhhccCCCCCCCCccccccccccCCCCCc
Q 003032 717 IKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEA 779 (855)
Q Consensus 717 ikcrlleg~naqevramvldmqarllldmlgkgiesalinpsalv~epwqas~etls~i~pe~ 779 (855)
|.+.+++|-+.+.-|+++-.+ .++|-+-||.--|...|.=...-++-|...|++++......
T Consensus 4 I~I~~~~Grs~eqK~~L~~~i-t~~l~~~lg~p~~~v~V~i~E~~~~~w~~gG~~~~e~~~~~ 65 (76)
T 3ej9_A 4 ISCDMRYGRTDEQKRALSAGL-LRVISEATGEPRENIFFVIREGSGINFVQHGEHLPDYVPGN 65 (76)
T ss_dssp EEEEEETTCCHHHHHHHHHHH-HHHHHHHHCCCGGGCEEEEEEECGGGEEETTEECCCCCC--
T ss_pred EEEEEcCCCCHHHHHHHHHHH-HHHHHHHHCcCcccEEEEEEEeCHHHeEECCEEcccccccc
Confidence 567788998877777666554 56778889988888888777778899999999999877654
No 70
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=21.17 E-value=1.6e+02 Score=27.26 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=44.7
Q ss_pred cchhhhhccc-cceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCcchheeeee
Q 003032 98 FSAVAWCGKL-NAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIAN 176 (855)
Q Consensus 98 Fsavawc~kl-N~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~~cpRALLiAn 176 (855)
-.+++|...- |.++.+++.. . |.|...+..+....+ ......+.|..+.|+|. .+-|+.+.
T Consensus 134 v~~~~~~p~~~~~l~s~~~dg-------~-------i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~--~~~l~~~~ 195 (402)
T 2aq5_A 134 VGIVAWHPTAQNVLLSAGCDN-------V-------ILVWDVGTGAAVLTL--GPDVHPDTIYSVDWSRD--GALICTSC 195 (402)
T ss_dssp EEEEEECSSBTTEEEEEETTS-------C-------EEEEETTTTEEEEEE--CTTTCCSCEEEEEECTT--SSCEEEEE
T ss_pred EEEEEECcCCCCEEEEEcCCC-------E-------EEEEECCCCCccEEE--ecCCCCCceEEEEECCC--CCEEEEEe
Confidence 3456666554 5666554321 1 455555544333322 11345678999999994 46788899
Q ss_pred ccccEEEeec
Q 003032 177 FYGRVTIWTQ 186 (855)
Q Consensus 177 f~GRvtIWtQ 186 (855)
.+|.|.||.-
T Consensus 196 ~d~~i~iwd~ 205 (402)
T 2aq5_A 196 RDKRVRVIEP 205 (402)
T ss_dssp TTSEEEEEET
T ss_pred cCCcEEEEeC
Confidence 9999999974
No 71
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=21.16 E-value=1.3e+02 Score=28.11 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=27.3
Q ss_pred CCCCCceEEEEecCCCcchheeeeeccccEEEeecC
Q 003032 152 DCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQP 187 (855)
Q Consensus 152 dsp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQP 187 (855)
..-.+.|..+.|||.+ +.|+.+-.+|.|.||.-.
T Consensus 341 ~~h~~~v~~l~~s~dg--~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 341 NSHEGRISCLGLSSDG--SALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SSCCCCCCEEEECSSS--SEEEEECTTSCEEEEECC
T ss_pred CCCCCceEEEEECCCC--CEEEEeeCCCCEEEEecC
Confidence 3445679999999975 468889999999999743
No 72
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=21.15 E-value=22 Score=29.68 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=43.2
Q ss_pred CCCCCceeEEEeeeecccCCCCccccccccCCCcccccccccccccccceeecCCCCCcccH
Q 003032 496 GGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDI 557 (855)
Q Consensus 496 gGqpPmqTvW~skvd~SIp~tdfkn~q~~~~g~~~d~~k~s~~~~dksk~v~FdpfdlP~d~ 557 (855)
||+||..+|+...++..+...+++.+ +...|...++.-..|....++|..-|=-|.-+.+.
T Consensus 1 Gg~~p~~~lfV~nL~~~~te~~L~~~-F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A 61 (110)
T 3s8s_A 1 GGQIPLKEVTFARLNDNVRETFLKDM-CRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGA 61 (110)
T ss_dssp -CCSCCCEEEEESCCTTCCHHHHHHH-HTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCCCCcEEEEECCCCCCCHHHHHHH-HHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHH
Confidence 79999999999999888877777665 34567777766555555566777666666555554
No 73
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=20.97 E-value=1.2e+02 Score=29.07 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=26.5
Q ss_pred CCCCceEEEEecCCCcchheeeeeccccEEEee
Q 003032 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWT 185 (855)
Q Consensus 153 sp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWt 185 (855)
...+.|..+.|+|... |+.+..+|.|.||.
T Consensus 582 ~h~~~v~~l~~s~~~~---l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 582 AHKDGVNNLLWETPST---LVSSGADACIKRWN 611 (615)
T ss_dssp SSTTCEEEEEEEETTE---EEEEETTSCEEEEE
T ss_pred cCccceEEEEEcCCCC---eEEecCCceEEEEe
Confidence 3467899999999885 99999999999995
No 74
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.95 E-value=78 Score=29.63 Aligned_cols=32 Identities=22% Similarity=0.544 Sum_probs=27.3
Q ss_pred CCCCceEEEEecCCCcchheeeeeccccEEEeec
Q 003032 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQ 186 (855)
Q Consensus 153 sp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQ 186 (855)
.-.+.|..+.|+|.. +-|+.+..+|.|.||.-
T Consensus 64 gH~~~V~~~~~sp~~--~~l~s~s~D~~v~iWd~ 95 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEK--NWIVSASQDGRLIVWNA 95 (380)
T ss_dssp CCSSCEEEEEECTTS--SCEEEEETTSEEEEEET
T ss_pred ccccEEEEEEEcCCC--CEEEEEeCCCeEEEEEC
Confidence 446789999999965 67899999999999963
No 75
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=20.23 E-value=1.6e+02 Score=26.95 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred ceEEEEEecCCCcccccccChhHhhhccchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCC--cceeEEE
Q 003032 71 ATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERP--TECAVFN 148 (855)
Q Consensus 71 aTvf~irLkqp~s~l~hKmsvpElcRnFsavawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerP--tE~avfn 148 (855)
+||.-..++...........+.+--....+++|....+.|+.+++... |.|...... ..+..|+
T Consensus 129 ~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~--------------i~iW~~~~~~~~~~~~~~ 194 (330)
T 2hes_X 129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT--------------VRIWKDYDDDWECVAVLN 194 (330)
T ss_dssp SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSC--------------EEEEEEETTEEEEEEEEC
T ss_pred CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCe--------------EEEEECCCCCeeEEEEcc
Q ss_pred eecCCCCCceEEEEecCCCcchheeeeeccccEEEe
Q 003032 149 VIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIW 184 (855)
Q Consensus 149 V~adsp~dsvq~ieWSp~~cpRALLiAnf~GRvtIW 184 (855)
.-.+.|..+.|+|..-.+.|+.+-.+|.|.||
T Consensus 195 ----~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw 226 (330)
T 2hes_X 195 ----GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226 (330)
T ss_dssp ----CCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred ----CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Done!